Citrus Sinensis ID: 012991
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 452 | 2.2.26 [Sep-21-2011] | |||||||
| P18549 | 398 | Isopenicillin N epimerase | N/A | no | 0.800 | 0.909 | 0.249 | 2e-22 | |
| O94431 | 392 | Uncharacterized aminotran | yes | no | 0.650 | 0.75 | 0.271 | 1e-17 | |
| Q03046 | 398 | Isopenicillin N epimerase | N/A | no | 0.789 | 0.896 | 0.240 | 4e-14 | |
| O32164 | 406 | Probable cysteine desulfu | yes | no | 0.794 | 0.884 | 0.234 | 8e-10 | |
| Q93WX6 | 463 | Cysteine desulfurase 2, c | no | no | 0.502 | 0.490 | 0.266 | 7e-08 | |
| Q7N3U5 | 412 | Cysteine desulfurase OS=P | yes | no | 0.513 | 0.563 | 0.265 | 7e-08 | |
| O27442 | 400 | Probable cysteine desulfu | yes | no | 0.172 | 0.195 | 0.354 | 2e-06 | |
| A7FHJ2 | 406 | Cysteine desulfurase OS=Y | yes | no | 0.376 | 0.418 | 0.267 | 3e-06 | |
| Q9V242 | 401 | Probable cysteine desulfu | yes | no | 0.378 | 0.426 | 0.265 | 3e-06 | |
| Q9KII6 | 685 | Probable cysteine desulfu | N/A | no | 0.382 | 0.252 | 0.252 | 3e-06 |
| >sp|P18549|CEFD_STRC2 Isopenicillin N epimerase OS=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) GN=cefD PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 161/421 (38%), Gaps = 59/421 (14%)
Query: 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG 99
V +N GS G P+S ++ +P DF + + ++R ++ LI D +
Sbjct: 19 VVNLNTGSGGPLPRSAFERVTGFRAHLAAEPMDFLLREVPALLWQARESLARLIGGDPL- 77
Query: 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159
++L N T A +V + R +L+ + ++ + R G +
Sbjct: 78 RLALATNVTAAVNLVASSL-------RLEAPGEILLSDDEYTPMRWCWERVARRHGLELR 130
Query: 160 EVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219
+LP + EI + G RL H+ S +++P +L + R
Sbjct: 131 TFRLPELPSDPAEITAAAVAAM------GPRTRLFFFSHVVSTTGLILPAAELCEEARAR 184
Query: 220 GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPV 279
G+ V VD AHA G + +D+ I DFY + HKW P V FL+ L ++
Sbjct: 185 GITTV-VDGAHAPGFLDLDLSRIPCDFYAGSGHKWLLAPTGVGFLHLAPGRL-EELEPTQ 242
Query: 280 VSHEF----GNGLPIESAWI------------GTRDYSAQLVIPSAVTFVSRFEGGIDGI 323
VS + G+G P GTRD L P ++ F + E G I
Sbjct: 243 VSWAYEPPEGSGPPAARDRFGSTPGLRRLECEGTRDICPWLATPESIDFQA--ELGPGAI 300
Query: 324 MQRNHEQALKMARMLANAWGTSLGSP--PEICAAMVMVGLPSRLRVMGEDDALRLRGHLR 381
R E R+LA+ G +L +P PE+ MV LP DA LR L
Sbjct: 301 RARRRELTDHARRLLADRPGRTLLTPDSPELSGGMVAYRLPP------GTDAAELRRGLW 354
Query: 382 VRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441
RF +E + Q P RIS Y T E+ ++ DA+ L
Sbjct: 355 ERFRIEAAVAEQPPGP-----------------VLRISANFYTTEEEIDRLADALDALTG 397
Query: 442 E 442
E
Sbjct: 398 E 398
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Catalyzes the reversible isomerization between isopenicillin N and penicillin N. Streptomyces clavuligerus (taxid: 1901) EC: 5EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7 |
| >sp|O94431|YHKC_SCHPO Uncharacterized aminotransferase C660.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.12c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 144/343 (41%), Gaps = 49/343 (14%)
Query: 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILE-SRAAVKDLINADDVGE 100
+NNGS G+ +V ++ LK Q DF N+ +E +R V LI AD
Sbjct: 23 NVNNGSCGTESLAVY-NKHVQLLKEAQSKPDFMCNAYMPMYMEATRNEVAKLIGADS-SN 80
Query: 101 ISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160
I ++AT + VL + +ND +LML+ A+ Y +
Sbjct: 81 IVFCNSATDGISTVLLTFP-------WEQNDEILMLNVAYPTC-----TYAADFAKNQHN 128
Query: 161 VQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEG 220
++L E + F K +E+ K R I D ++SMP ++ P K+VK+C+
Sbjct: 129 LRLDVIDVGVEIDEDLFLKEVEQRFLQSKP-RAFICDILSSMPVILFPWEKVVKLCKKYN 187
Query: 221 VDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVV 280
+ + +D AHA+G I +++ + DF +N HKW P + LY
Sbjct: 188 IVSI-IDGAHAIGHIPMNLANVDPDFLFTNAHKWLNSPAACTVLYVSAK----------- 235
Query: 281 SHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFE-------------------GGID 321
+H LP+ + G R+ + V FV+ F+ GG +
Sbjct: 236 NHNLIEALPLSYGY-GLREKESIAVDTLTNRFVNSFKQDLPKFIAVGEAIKFRKSIGGEE 294
Query: 322 GIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSR 364
I Q HE ALK A +++ GTS PP AMV V +P R
Sbjct: 295 KIQQYCHEIALKGAEIISKELGTSFIKPP-YPVAMVNVEVPLR 336
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|Q03046|CEFD_NOCLA Isopenicillin N epimerase OS=Nocardia lactamdurans GN=cefD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/415 (24%), Positives = 159/415 (38%), Gaps = 58/415 (13%)
Query: 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG 99
V +N GS G P+ V D+ + + P DF L + +R + + A
Sbjct: 19 VTNLNAGSCGPLPRPVF-DRVTVRARMAAGPMDFLSRQLPPLLWTARERLAGYLGARPE- 76
Query: 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159
++ N T A +V + G +L+ + ++ + G V
Sbjct: 77 RLAFATNVTGAVNLVASSVQPHLAAG-----GEILLSDQEYAPMRWCWERVARHQGLVVR 131
Query: 160 EVQLPF-PLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD 218
+LP PL S +E++ + G RL H+ S +V+P +L + R
Sbjct: 132 TFRLPVQPLGSPDEVVEAATAAM------GPRTRLLFFSHVVSSTGLVLPATRLCEEARR 185
Query: 219 EGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHP 278
GV V VD A A G +D+ + D+Y + HKW P V FL+ + + P
Sbjct: 186 RGVLTV-VDGAQAPGFTDLDLAALPCDYYAGSGHKWLLAPTGVGFLHFAED-QGGVLRPP 243
Query: 279 VVS--------------HEFGNGLPIESAWI-GTRDYSAQLVIPSAVTFVSRFEGGIDGI 323
VS + FG+ + + GTRD L +PSA+ F + G +
Sbjct: 244 QVSWGYRPDGENPSDERNRFGSTDRLRNLECEGTRDLCPWLAVPSAIDFQAGL--GHGRV 301
Query: 324 MQRNHEQALKMARMLANAWGTSLGSP--PEICAAMVMVGLPSRLRVMGEDDALRLRGHLR 381
+R E A L+ G +P P + AM LP G D A LR L
Sbjct: 302 RERMRELAAFTRERLSGWRGLEPVTPAHPGLSGAMTAFRLPP-----GTDTA-GLRHGLW 355
Query: 382 VRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAV 436
RF ++VP+ + DG + R+S YNT + E+ +A+
Sbjct: 356 DRFRIDVPVLDR--------------PDGPLL---RVSTHFYNTETEVERLAEAL 393
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Catalyzes the reversible isomerization between isopenicillin N and penicillin N. Nocardia lactamdurans (taxid: 1913) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|O32164|CSD_BACSU Probable cysteine desulfurase OS=Bacillus subtilis (strain 168) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 104/443 (23%), Positives = 184/443 (41%), Gaps = 84/443 (18%)
Query: 27 AEIRDEFS--HHQ---HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKG 81
+IR++F H Q H + +++ + P++V+ K+ + Y +++ +G
Sbjct: 4 TDIREQFPILHQQVNGHDLVYLDSAATSQKPRAVIETLDKYY--------NQYNSNVHRG 55
Query: 82 I--LESRAA---------VKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN 130
+ L +RA V+ INA + EI TT+ L + +
Sbjct: 56 VHTLGTRATDGYEGAREKVRKFINAKSMAEIIFTKGTTTS----LNMVALSYARANLKPG 111
Query: 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189
D V++ + A Q V G ++ + PL + I + + ++ + K
Sbjct: 112 DEVVITYMEHHANIIPWQQAVKATGATLKYI----PLQEDGTISLEDVRETVTSNTK--- 164
Query: 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVS 249
+ + H++++ V P++++ KI D G + VD A + +KIDV+++ DF+
Sbjct: 165 ---IVAVSHVSNVLGTVNPIKEMAKIAHDNGA-VIVVDGAQSTPHMKIDVQDLDCDFFAL 220
Query: 250 NLHKWFFCPPS-VAFLYCRKSILSSDMHHPVVSHEFGN------GLPIESAW-------- 294
+ HK C P+ V LY +K++L + + EFG GL ES W
Sbjct: 221 SSHK--MCGPTGVGVLYGKKALLEN-----MEPAEFGGEMIDFVGL-YESTWKELPWKFE 272
Query: 295 IGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354
GT + + + +A+ F+ E G+D I + H+ A G ++ P E A
Sbjct: 273 AGTPIIAGAIGLGAAIDFLE--EIGLDEISRHEHKLAAYALERFRQLDGVTVYGPEE-RA 329
Query: 355 AMVMVGLPSRLRVMGEDDALRLRGH-LRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413
+V L V D A L + VR G H+ A QP D +T
Sbjct: 330 GLVTFNLDD---VHPHDVATVLDAEGIAVRAG-----HHCA-----QPLMKWLD----VT 372
Query: 414 GYARISHQVYNTLEDYEKFRDAV 436
AR S +YNT E+ +K +A+
Sbjct: 373 ATARASFYLYNTEEEIDKLVEAL 395
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Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q93WX6|NFS2_ARATH Cysteine desulfurase 2, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 47/274 (17%)
Query: 64 LKFLQQPDDFYFNSLRKGI--LESRAA---------VKDLINADDVGEISLVDNATTAAA 112
L LQ +FY +++ +GI L ++A V INA D EI NAT A
Sbjct: 89 LDALQNYYEFYNSNVHRGIHYLSAKATDEFELARKKVARFINASDSREIVFTRNATEAIN 148
Query: 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172
+V G D V++ + Q V++ G+V L F +E+E
Sbjct: 149 LVAYSWGLS----NLKPGDEVILTVAEHHSCIVPWQI-VSQKTGAV----LKFVTLNEDE 199
Query: 173 I--INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAH 230
+ IN+ ++ I K L + H++++ +P+ ++V D G +V VDA
Sbjct: 200 VPDINKLRELISPKTK------LVAVHHVSNVLASSLPIEEIVVWAHDVGA-KVLVDACQ 252
Query: 231 AMGSIKIDVKEIGADFYVSNLHKWFFCPPS-VAFLYCRKSILSSDMHHPVVSHEFGNGLP 289
++ + +DV+++ ADF V++ HK C P+ + FLY + +L S + G G
Sbjct: 253 SVPHMVVDVQKLNADFLVASSHK--MCGPTGIGFLYGKSDLLHS------MPPFLGGGEM 304
Query: 290 IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323
I ++ D+S P SRFE G I
Sbjct: 305 ISDVFL---DHSTYAEPP------SRFEAGTPAI 329
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Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q7N3U5|SUFS_PHOLL Cysteine desulfurase OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=sufS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 117/271 (43%), Gaps = 39/271 (14%)
Query: 86 RAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKK 145
R + I+A EI V T ++ GR F + D +++ A
Sbjct: 73 RYQIAQFIHAQSHEEIVFVKGTTEGINLIANSYGRKF----INNGDNIVITEMEHHA--- 125
Query: 146 SIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205
+I + A E+++ +PL E + I D + +L H++++
Sbjct: 126 NIVPWYMLAEQIGFEIRV-WPLNEN----GELDQAILASLIDSRT-KLLSFTHLSNVLGT 179
Query: 206 VIPVRKLVKICR-----DEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS 260
V PVR+++K R EG + VD A A+ +IDV+++ DFYV + HK + P
Sbjct: 180 VNPVRQIIKQARKLADEQEGRLHILVDGAQAIMHKQIDVQDLDCDFYVFSSHK-LYGPTG 238
Query: 261 VAFLYCRKSILSSDMHHP-------VVSHEFGNGLPI-ESAW---IGTRDYSAQLVIPSA 309
+ LY RKS+L D P + G+ E W GT + + + + +A
Sbjct: 239 IGVLYGRKSLL--DAMPPWEGGGAMIKQVSLQKGITYAEPPWRFEAGTPNITGIIGLGAA 296
Query: 310 VTFVSRFEGGIDGIMQRNHEQAL---KMARM 337
V +V+ G+D I Q HEQAL MAR+
Sbjct: 297 VDYVTSL--GLDEIQQ--HEQALMDYAMARL 323
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Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L-selenocysteine. Selenocysteine lyase activity is however unsure in vivo. Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|O27442|CSD_METTH Probable cysteine desulfurase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
RL + HI++ V V+++ +I D G VDAA ++G +++DV+ IGADF
Sbjct: 156 RLVTVTHISNALGTVQDVKEIGRIAHDVGA-LYLVDAAQSIGHMEVDVRAIGADFAAFPG 214
Query: 252 HKWFFCPPSVAFLYCRKSI 270
HK P FLYC +
Sbjct: 215 HKGTLGPVGTGFLYCSTDV 233
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Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|A7FHJ2|SUFS_YERP3 Cysteine desulfurase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=sufS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 17/187 (9%)
Query: 86 RAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKK 145
R V D I+A EI V T A +V GR F D++++ A
Sbjct: 73 RTQVADFIHAASAEEIIFVRGTTEAINLVANSYGRHF----LVTGDSIIITEMEHHANIV 128
Query: 146 SIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204
Q G VE+++ +PL + E+ I + I+ RL + I+++
Sbjct: 129 PWQMLAQDLG---VEIRV-WPLTATGELEITDLAALIDD------TTRLLAVTQISNVLG 178
Query: 205 VVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFL 264
V P++ +V + G+ V VD A A+ +DV+ +G DFYV + HK + P + L
Sbjct: 179 TVNPIKDIVAQAKAAGL-VVLVDGAQAVMHQPVDVQALGCDFYVFSGHK-LYGPSGIGIL 236
Query: 265 YCRKSIL 271
Y + ++L
Sbjct: 237 YGKSALL 243
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Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L-selenocysteine. Selenocysteine lyase activity is however unsure in vivo. Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) (taxid: 349747) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q9V242|CSD_PYRAB Probable cysteine desulfurase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 17/188 (9%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAV 143
ESR V D INA+ EI+ N T+ ++ L +G E F + D ++ +
Sbjct: 64 ESRKVVADFINAE-FDEIAFTKN--TSESLNLVALG---LEHLFKKGDKIVTTPYEHHSN 117
Query: 144 KKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMP 203
Q + G ++L F +E ++ + +K K +L + H+++
Sbjct: 118 LLPWQRLAKKKG-----LKLEFIEGDDEGNLD-----LADAEKKIKGAKLVAVQHVSNAL 167
Query: 204 CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
V+ V +L K+ ++EG V VDAA ++G +++DVK++ ADF + HK P +
Sbjct: 168 GVIHEVEELGKMVKEEGAIFV-VDAAQSVGHMEVDVKKLKADFLAFSGHKGPMGPTGIGV 226
Query: 264 LYCRKSIL 271
LY K
Sbjct: 227 LYINKEFF 234
|
Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q9KII6|CSD_MYCPA Probable cysteine desulfurase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=MAP_2120c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 17/190 (8%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAV 143
E+R V + I A I V T A +V G D +++ H A
Sbjct: 347 EARDTVAEFIGAPSSDNIVFVRGTTEAINLVAHAWG----AKHLQPGDEIVITHLEHHAN 402
Query: 144 KKSIQAYVTRAGGSVVEVQLPFPLASEEEII-NEFKKGIEKGKKDGKMIRLAIIDHITSM 202
Q +++ G++++V P+ ++ +EF+ + G +L H+++
Sbjct: 403 IVPWQ-LISQKTGAILKVA---PIDDAGNLLLSEFEGLL------GPRTKLVAASHVSNA 452
Query: 203 PCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVA 262
V+PV K+V++ G +V +D A ++ I IDV E+GADF+V + HK + P +
Sbjct: 453 LGTVMPVDKIVELGHRYGA-RVLIDGAQSIQHIPIDVAELGADFFVFSGHK-IYGPTGIG 510
Query: 263 FLYCRKSILS 272
LY + L+
Sbjct: 511 ALYGTEEALT 520
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Mycobacterium paratuberculosis (taxid: 1770) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 452 | ||||||
| 225437781 | 451 | PREDICTED: isopenicillin N epimerase-lik | 0.993 | 0.995 | 0.724 | 0.0 | |
| 255548251 | 451 | cysteine desulfurylase, putative [Ricinu | 0.986 | 0.988 | 0.728 | 0.0 | |
| 224068711 | 458 | predicted protein [Populus trichocarpa] | 0.964 | 0.951 | 0.748 | 0.0 | |
| 224128159 | 453 | predicted protein [Populus trichocarpa] | 0.988 | 0.986 | 0.712 | 0.0 | |
| 356533487 | 445 | PREDICTED: isopenicillin N epimerase-lik | 0.980 | 0.995 | 0.688 | 0.0 | |
| 15228693 | 454 | epimerase-related protein [Arabidopsis t | 0.980 | 0.975 | 0.655 | 0.0 | |
| 297744090 | 489 | unnamed protein product [Vitis vinifera] | 0.865 | 0.799 | 0.755 | 0.0 | |
| 356501841 | 457 | PREDICTED: isopenicillin N epimerase-lik | 0.973 | 0.962 | 0.683 | 0.0 | |
| 297821106 | 454 | hypothetical protein ARALYDRAFT_486720 [ | 0.980 | 0.975 | 0.648 | 0.0 | |
| 357442063 | 450 | Cysteine desulfurase [Medicago truncatul | 0.984 | 0.988 | 0.663 | 0.0 |
| >gi|225437781|ref|XP_002281415.1| PREDICTED: isopenicillin N epimerase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/454 (72%), Positives = 391/454 (86%), Gaps = 5/454 (1%)
Query: 1 MDQE-ARNGELTH-HVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLAD 58
MD + NG+ +H HVSKKPKL+ ISE EIR EFSHHQ G+ARINNGSFGSCP S++A
Sbjct: 1 MDSDRGENGDSSHNHVSKKPKLSAFISEEEIRQEFSHHQRGIARINNGSFGSCPASIIAA 60
Query: 59 QQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI 118
Q++WQL+FLQQPDDFYFN LRKG+LESR VK LINAD V E+SL+DNATTAAAIVLQQI
Sbjct: 61 QKEWQLRFLQQPDDFYFNHLRKGLLESRTVVKGLINADSVDEVSLIDNATTAAAIVLQQI 120
Query: 119 GRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFK 178
GR F +G+F + D V+MLHCAFQ+VKKSIQAYVT AGGSV+EVQLPFPL S+EEI++EF+
Sbjct: 121 GRAFAQGKFQKGDVVVMLHCAFQSVKKSIQAYVTGAGGSVIEVQLPFPLTSKEEIVSEFR 180
Query: 179 KGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID 238
KG+EKGK DG+ +RLAIIDHITSMPCVV+PV +LVKICR EGVDQVFVDAAHA+GS+ +D
Sbjct: 181 KGLEKGKSDGRHVRLAIIDHITSMPCVVVPVEELVKICRQEGVDQVFVDAAHAIGSVPVD 240
Query: 239 VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTR 298
VKEIGADFYVSNLHKWFFCPPSVAFLYCRKS LSS++HHPVVSHEFGNGL IES+WIGTR
Sbjct: 241 VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSPLSSEVHHPVVSHEFGNGLAIESSWIGTR 300
Query: 299 DYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVM 358
DYS+QLV+PS + FV+RFEGGI+GIM RNHE +KM MLA +WGT+LG+PPE+CA+M+M
Sbjct: 301 DYSSQLVVPSVLEFVNRFEGGIEGIMMRNHEIVVKMGEMLAKSWGTNLGAPPEMCASMIM 360
Query: 359 VGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418
VGLPSRL + E+DA+RLR +LR G+EVP+HYQAP D + G +DKDG++TGYARI
Sbjct: 361 VGLPSRLFISSEEDAMRLRSYLRQHHGIEVPLHYQAPSD---VEGGPKDKDGLVTGYARI 417
Query: 419 SHQVYNTLEDYEKFRDAVILLVEEGQVCQMLLTE 452
SHQVYN+ +DY KFRDA+ LVE+ + C+ML E
Sbjct: 418 SHQVYNSFDDYCKFRDAINQLVEQRRSCKMLFME 451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548251|ref|XP_002515182.1| cysteine desulfurylase, putative [Ricinus communis] gi|223545662|gb|EEF47166.1| cysteine desulfurylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/450 (72%), Positives = 389/450 (86%), Gaps = 4/450 (0%)
Query: 2 DQEARNGELT-HHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQ 60
+++ RNG++ HH++KK +LT+ I+E EIR+EFSHH+ VARINNGSFGSCP+SVLADQ+
Sbjct: 3 NEDPRNGDVKPHHLTKKSRLTQFITEPEIREEFSHHRPNVARINNGSFGSCPRSVLADQR 62
Query: 61 KWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120
WQLKFLQQPDDFYFN+LRKGI SR +K+LINA+DV EISLVDNATTAAAIVLQQIGR
Sbjct: 63 NWQLKFLQQPDDFYFNTLRKGIRHSRTIIKNLINANDVDEISLVDNATTAAAIVLQQIGR 122
Query: 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKG 180
FT+G+F ND VL+LHCA++AVKKSIQAYV RAGGSVVEV LPFP+ S+EEII EF+KG
Sbjct: 123 AFTDGKFQENDVVLILHCAYEAVKKSIQAYVRRAGGSVVEVHLPFPVNSDEEIITEFRKG 182
Query: 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVK 240
+ KGK +G+ +RLAIIDHITSMPCVV PV++LVKICR+EGVDQVFVDAAHA+GS+KIDVK
Sbjct: 183 LVKGKSNGQKVRLAIIDHITSMPCVVTPVKELVKICREEGVDQVFVDAAHAIGSVKIDVK 242
Query: 241 EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300
EIGADFYVSNLHKWFFCPPSVAFLYCRK+ +S +HHPVVSHE GNGLPIESAWIGTRDY
Sbjct: 243 EIGADFYVSNLHKWFFCPPSVAFLYCRKNTSASSLHHPVVSHEHGNGLPIESAWIGTRDY 302
Query: 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVG 360
S+QLV+PSA+ FV+RFEGG+DGIM+RNH + ++M +MLA +WGTSLG PPE+CA MVMV
Sbjct: 303 SSQLVVPSALEFVNRFEGGVDGIMKRNHAKVVEMGKMLAQSWGTSLGVPPEMCAGMVMVS 362
Query: 361 LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420
LPSRL V +DDALRLR HLR +GVEVPIHYQAPKD + G RDKDG IT YARIS+
Sbjct: 363 LPSRLLVKSQDDALRLRSHLRDNYGVEVPIHYQAPKDG---ELGMRDKDGFITAYARISY 419
Query: 421 QVYNTLEDYEKFRDAVILLVEEGQVCQMLL 450
QVYNT EDY KFR+A+ L+++ + + L
Sbjct: 420 QVYNTFEDYCKFRNAINQLLKDPHISEKLF 449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068711|ref|XP_002302806.1| predicted protein [Populus trichocarpa] gi|222844532|gb|EEE82079.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/445 (74%), Positives = 378/445 (84%), Gaps = 9/445 (2%)
Query: 3 QEARNG-----ELTHHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLA 57
++ARNG VSKKP+++ I+E EI EFSHH VARINNGSFGSCP SVLA
Sbjct: 6 KDARNGGDSLSTTPTQVSKKPRVSFSITEHEIHHEFSHHNPNVARINNGSFGSCPGSVLA 65
Query: 58 DQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117
Q+ WQL+FLQQPDDFYFN+LRKGIL SR +KDLINADDV EISLVDNATTAAAIVLQQ
Sbjct: 66 AQKNWQLQFLQQPDDFYFNTLRKGILHSRTVIKDLINADDVDEISLVDNATTAAAIVLQQ 125
Query: 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEF 177
IGR F EG F +NDTVLMLHCA+QAVKKSIQAYVTRAGGSV+E+QLPFP+ S EEII+EF
Sbjct: 126 IGRAFAEGNFAKNDTVLMLHCAYQAVKKSIQAYVTRAGGSVIEIQLPFPVTSNEEIISEF 185
Query: 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI 237
K+GIEKGK +GK IRLAIIDHITSMPCVVIPV++LVKICR+EGVDQVFVDAAHA+GS++I
Sbjct: 186 KRGIEKGKANGKKIRLAIIDHITSMPCVVIPVKELVKICREEGVDQVFVDAAHAIGSVEI 245
Query: 238 DVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI-LSSDMHHPVVSHEFGNGLPIESAWIG 296
+VKEIGADFYVSNLHKWFFCPPSVAFLYC+K+ L D+HHPVVSHE+GNGLPIESAWIG
Sbjct: 246 NVKEIGADFYVSNLHKWFFCPPSVAFLYCKKAASLEFDVHHPVVSHEYGNGLPIESAWIG 305
Query: 297 TRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAM 356
TRDYS+QLV+P+A+ FV+RFE GI GIM+RNHE+ +KM +MLA +WGT+LGS PE+CA M
Sbjct: 306 TRDYSSQLVVPAALEFVNRFEDGIQGIMKRNHEEVVKMGKMLAESWGTNLGSSPEMCAGM 365
Query: 357 VMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416
+MVGLPSRLRV EDDALRLR HLR GVEVPIHYQ KD + G +DKDG+IT YA
Sbjct: 366 IMVGLPSRLRVSSEDDALRLRSHLRECHGVEVPIHYQGLKDG---EEGVKDKDGVITAYA 422
Query: 417 RISHQVYNTLEDYEKFRDAVILLVE 441
RISHQVYN EDY K RDAV L E
Sbjct: 423 RISHQVYNKSEDYCKLRDAVNRLSE 447
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128159|ref|XP_002320258.1| predicted protein [Populus trichocarpa] gi|222861031|gb|EEE98573.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/452 (71%), Positives = 379/452 (83%), Gaps = 5/452 (1%)
Query: 3 QEARNG--ELTHHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQ 60
++ RNG VSKKP+ + I+E EI +EFSHH VARINNGSFGSCP SVLA Q+
Sbjct: 5 KDPRNGGDSSPKQVSKKPRTSGHITEQEIHEEFSHHNLNVARINNGSFGSCPGSVLAAQK 64
Query: 61 KWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120
WQL+FLQQPDDFYFN+LRKGIL SR +K+LINADDV EISLVDNATTAAAIVLQQIGR
Sbjct: 65 NWQLQFLQQPDDFYFNTLRKGILHSRTVIKNLINADDVDEISLVDNATTAAAIVLQQIGR 124
Query: 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKG 180
F EG+F +NDTVLMLHCA++AVKKSIQAYVTRAGGSV+EVQLPFP+ S EEII EFK+G
Sbjct: 125 AFAEGKFAKNDTVLMLHCAYEAVKKSIQAYVTRAGGSVIEVQLPFPVNSNEEIIAEFKRG 184
Query: 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVK 240
+ KGK +G+ IRLAIIDHIT+MPCVVIPV++LVKICR+EGV+QVFVDAAHA+GS+ I+VK
Sbjct: 185 LGKGKANGRKIRLAIIDHITAMPCVVIPVKELVKICREEGVEQVFVDAAHAIGSVDINVK 244
Query: 241 EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300
EIGADFYVSNLHKWFFCPPSV+FLYC+K+ L D+HHPVVSHE+GNGLPIESAW+GTRDY
Sbjct: 245 EIGADFYVSNLHKWFFCPPSVSFLYCKKASLEFDVHHPVVSHEYGNGLPIESAWVGTRDY 304
Query: 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVG 360
S+QLV+P+A+ FV+RFE GI GIM+RNHE+ +KM +MLA +W T+LGSPPE+CA M+MVG
Sbjct: 305 SSQLVVPAALEFVNRFEDGIHGIMKRNHEEVVKMGKMLAESWRTNLGSPPEMCAGMIMVG 364
Query: 361 LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420
LPSRL V EDDA RLR HLR GVEVPIHYQ +D + G +DKDG+IT YARISH
Sbjct: 365 LPSRLSVSSEDDASRLRSHLRDCHGVEVPIHYQGLRDG---EEGVKDKDGVITAYARISH 421
Query: 421 QVYNTLEDYEKFRDAVILLVEEGQVCQMLLTE 452
Q+YN EDY +FRDAV L E Q+ + + E
Sbjct: 422 QIYNKFEDYCRFRDAVNHLAENRQIRRTISPE 453
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533487|ref|XP_003535295.1| PREDICTED: isopenicillin N epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/450 (68%), Positives = 374/450 (83%), Gaps = 7/450 (1%)
Query: 4 EARNGELTHHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQ 63
E N L + +KKPKLT ISEAEIR+EFSHHQ GVARINNGSFGSCP+SVL Q WQ
Sbjct: 2 ENENTILRNGTAKKPKLTHAISEAEIREEFSHHQRGVARINNGSFGSCPRSVLNAQSIWQ 61
Query: 64 LKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT 123
L+FLQ PDDFYFNSLR GIL SRAA+KD+INA+ V ++SLVDNATTAAA+VLQQIGR F
Sbjct: 62 LRFLQHPDDFYFNSLRPGILASRAAIKDIINAEHVDDVSLVDNATTAAAVVLQQIGRHFV 121
Query: 124 EGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEK 183
G FHRND V+M HCA+QAVKKSI+AYVT GG+VVEVQLPFP+ SEEEI+ EFKKG+E
Sbjct: 122 RGHFHRNDAVVMFHCAYQAVKKSIEAYVTPIGGTVVEVQLPFPVRSEEEIVTEFKKGLEN 181
Query: 184 GKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG 243
GK +G +RLA+IDHITSMP VV+PVR+L+++CR+ GV+QVFVD AHA+GS+ +DVKEIG
Sbjct: 182 GKLNGGKVRLAVIDHITSMPSVVLPVRELIRVCREHGVEQVFVDGAHAIGSLHVDVKEIG 241
Query: 244 ADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQ 303
ADFYVSNL+KWFF PPSVAFLYC++ S+D+HHPVVS E+G GLP+ESAW+G RDYS Q
Sbjct: 242 ADFYVSNLYKWFFSPPSVAFLYCKEK--SNDVHHPVVSQEYGKGLPVESAWVGMRDYSPQ 299
Query: 304 LVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPS 363
LV+PS + FV+RFEGGI+GIM+RNH+ +KM MLA +WGT LGSPPE+CA+M+MVGLPS
Sbjct: 300 LVVPSILEFVNRFEGGIEGIMKRNHDGVVKMGTMLAESWGTVLGSPPEMCASMIMVGLPS 359
Query: 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKD-DGQPQAGARDKDGIITGYARISHQV 422
RL VM +DDALRLR +LRV VEVP++YQA ++ D P RDKDG ITGY RISHQV
Sbjct: 360 RLCVMSDDDALRLRSYLRVYHEVEVPVYYQALRNGDRDP----RDKDGFITGYVRISHQV 415
Query: 423 YNTLEDYEKFRDAVILLVEEGQVCQMLLTE 452
YNT++DYE+ + A+ LVE+G+VC + TE
Sbjct: 416 YNTVDDYERLKTAINQLVEDGKVCSGIPTE 445
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228693|ref|NP_191772.1| epimerase-related protein [Arabidopsis thaliana] gi|6899923|emb|CAB71873.1| putative protein [Arabidopsis thaliana] gi|17064882|gb|AAL32595.1| putative protein [Arabidopsis thaliana] gi|21555427|gb|AAM63856.1| Similar to Streptomyces clavuligerus isopenicillin epimerase (P18549) [Arabidopsis thaliana] gi|31376383|gb|AAP49518.1| At3g62130 [Arabidopsis thaliana] gi|332646793|gb|AEE80314.1| epimerase-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/450 (65%), Positives = 375/450 (83%), Gaps = 7/450 (1%)
Query: 4 EARNGEL---THHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQ 60
E RNG+ H KKP+L ++E++I EF+HHQ GVARINNGSFG CP SVL Q+
Sbjct: 5 ERRNGDSMSHNHRAPKKPRLAGLLTESDIDSEFAHHQTGVARINNGSFGCCPGSVLEAQR 64
Query: 61 KWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120
+WQL++L+QPD+FYFN LR+G+L SR + DLINADDV E+SLVDNATTAAAIVLQ++GR
Sbjct: 65 EWQLRYLRQPDEFYFNGLRRGLLASRTVISDLINADDVDEVSLVDNATTAAAIVLQKVGR 124
Query: 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKG 180
F+EG++ + DTV+M HCAFQ+VKKSIQAYV+R GGS VEV+LPFP+ S EEII++F++G
Sbjct: 125 CFSEGKYKKEDTVVMFHCAFQSVKKSIQAYVSRVGGSTVEVRLPFPVNSNEEIISKFREG 184
Query: 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVK 240
+EKG+ +G+ +RLAIIDHITSMPCV++PVR+LVKICR+EGV+QVFVDAAHA+GS+K+DVK
Sbjct: 185 LEKGRANGRTVRLAIIDHITSMPCVLMPVRELVKICREEGVEQVFVDAAHAIGSVKVDVK 244
Query: 241 EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300
EIGAD+YVSNLHKWFFCPPS+AF YC+K SD+HHPVVSHEFGNGLPIESAWIGTRDY
Sbjct: 245 EIGADYYVSNLHKWFFCPPSIAFFYCKKRGSESDVHHPVVSHEFGNGLPIESAWIGTRDY 304
Query: 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVG 360
S+QLV+PS + FV+RFEGG++GIM +NH++A++M MLA+AWGT+LGSPPE+C MVM+G
Sbjct: 305 SSQLVVPSVMEFVNRFEGGMEGIMMKNHDEAVRMGLMLADAWGTNLGSPPEMCVGMVMIG 364
Query: 361 LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD-GIITGYARIS 419
LPS+L V ++DA++LR +LRV + VEVP+ Y +D + G +DKD G+IT Y RIS
Sbjct: 365 LPSKLCVGSDEDAIKLRSYLRVHYSVEVPVFYLGLRDG---EEGVKDKDSGLITAYVRIS 421
Query: 420 HQVYNTLEDYEKFRDAVILLVEEGQVCQML 449
HQVYN EDYE+ RDA+ LV++ CQ L
Sbjct: 422 HQVYNKTEDYERLRDAITELVKDQMTCQNL 451
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744090|emb|CBI37060.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/392 (75%), Positives = 347/392 (88%), Gaps = 1/392 (0%)
Query: 7 NGELTH-HVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLK 65
NG+ +H HVSKKPKL+ ISE EIR EFSHHQ G+ARINNGSFGSCP S++A Q++WQL+
Sbjct: 36 NGDSSHNHVSKKPKLSAFISEEEIRQEFSHHQRGIARINNGSFGSCPASIIAAQKEWQLR 95
Query: 66 FLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG 125
FLQQPDDFYFN LRKG+LESR VK LINAD V E+SL+DNATTAAAIVLQQIGR F +G
Sbjct: 96 FLQQPDDFYFNHLRKGLLESRTVVKGLINADSVDEVSLIDNATTAAAIVLQQIGRAFAQG 155
Query: 126 RFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGK 185
+F + D V+MLHCAFQ+VKKSIQAYVT AGGSV+EVQLPFPL S+EEI++EF+KG+EKGK
Sbjct: 156 KFQKGDVVVMLHCAFQSVKKSIQAYVTGAGGSVIEVQLPFPLTSKEEIVSEFRKGLEKGK 215
Query: 186 KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGAD 245
DG+ +RLAIIDHITSMPCVV+PV +LVKICR EGVDQVFVDAAHA+GS+ +DVKEIGAD
Sbjct: 216 SDGRHVRLAIIDHITSMPCVVVPVEELVKICRQEGVDQVFVDAAHAIGSVPVDVKEIGAD 275
Query: 246 FYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLV 305
FYVSNLHKWFFCPPSVAFLYCRKS LSS++HHPVVSHEFGNGL IES+WIGTRDYS+QLV
Sbjct: 276 FYVSNLHKWFFCPPSVAFLYCRKSPLSSEVHHPVVSHEFGNGLAIESSWIGTRDYSSQLV 335
Query: 306 IPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRL 365
+PS + FV+RFEGGI+GIM RNHE +KM MLA +WGT+LG+PPE+CA+M+MVGLPSRL
Sbjct: 336 VPSVLEFVNRFEGGIEGIMMRNHEIVVKMGEMLAKSWGTNLGAPPEMCASMIMVGLPSRL 395
Query: 366 RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397
+ E+DA+RLR +LR G+EVP+HYQAP D
Sbjct: 396 FISSEEDAMRLRSYLRQHHGIEVPLHYQAPSD 427
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501841|ref|XP_003519732.1| PREDICTED: isopenicillin N epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/452 (68%), Positives = 369/452 (81%), Gaps = 12/452 (2%)
Query: 7 NGELTH--HVSKKPKL---TRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQK 61
N TH KKPKL T ISEAEIR+EFSHH GVARINNGSFGSCP SVLA Q
Sbjct: 12 NDNTTHLNGTGKKPKLAHVTHTISEAEIREEFSHHHRGVARINNGSFGSCPHSVLAAQST 71
Query: 62 WQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121
WQL+FLQQPDDFYFN+LR GIL SRAA++DLINA V ++SLVDNATTAAA+VLQQIGR
Sbjct: 72 WQLRFLQQPDDFYFNALRPGILASRAAIQDLINAGHVDDVSLVDNATTAAAVVLQQIGRR 131
Query: 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGI 181
F G FHRND V+M HCA+QAVKKSI+AYV+ GG++VEV+LPFP+ SEEEII EFKKG+
Sbjct: 132 FVRGYFHRNDAVVMFHCAYQAVKKSIEAYVSPIGGTIVEVELPFPVRSEEEIITEFKKGL 191
Query: 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE 241
EKGK +G +RLAIIDHITSMP V+PVR+L+++CR+ GV+QVFVD AHA+GS+ +DVKE
Sbjct: 192 EKGKLNGGRVRLAIIDHITSMPSFVLPVRELIRVCREHGVEQVFVDGAHAIGSVPVDVKE 251
Query: 242 IGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYS 301
IGADFYVSNL+KWFF PPSVAFLYC++ S+D+HHPVVS E+G GLP+ESAW+G RDYS
Sbjct: 252 IGADFYVSNLYKWFFSPPSVAFLYCKEK--SNDVHHPVVSQEYGKGLPVESAWVGMRDYS 309
Query: 302 AQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL 361
QLV+PS + FV+RFEGGI+GIM+RNH+ +KM MLA +WGT LGSPP++CA+M+MVGL
Sbjct: 310 PQLVVPSILEFVNRFEGGIEGIMKRNHDGVVKMGTMLAESWGTVLGSPPDMCASMIMVGL 369
Query: 362 PSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKD-DGQPQAGARDKDGIITGYARISH 420
PSRLRVM DDALRLR +LRV VEVP++YQA ++ D P RDKDG ITGY RISH
Sbjct: 370 PSRLRVMSVDDALRLRSYLRVYHAVEVPVYYQALRNGDRDP----RDKDGFITGYVRISH 425
Query: 421 QVYNTLEDYEKFRDAVILLVEEGQVCQMLLTE 452
QVYNT +DYE+ + A+ LVE+G+VC L E
Sbjct: 426 QVYNTADDYERLKTAINQLVEDGKVCSGLPKE 457
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297821106|ref|XP_002878436.1| hypothetical protein ARALYDRAFT_486720 [Arabidopsis lyrata subsp. lyrata] gi|297324274|gb|EFH54695.1| hypothetical protein ARALYDRAFT_486720 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 292/450 (64%), Positives = 373/450 (82%), Gaps = 7/450 (1%)
Query: 4 EARNGEL---THHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQ 60
E RNG+ H KKP+L ++E++I EF+HHQ GVARINNGSFG CP SVL Q+
Sbjct: 5 ERRNGDSMSHNHRAPKKPRLAGLLTESDIDSEFAHHQTGVARINNGSFGCCPGSVLEAQR 64
Query: 61 KWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120
+WQL++L+QPD+FYFN LR+G++ SR + DLINADDV E+SLVDNATTAAAIVLQ++GR
Sbjct: 65 EWQLRYLRQPDEFYFNGLRRGLVASRTVISDLINADDVDEVSLVDNATTAAAIVLQKVGR 124
Query: 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKG 180
F+EG++ + DTV+M HCAFQ+VKKSIQAYV+R GG VEV+LPFP+ S EEII++F++G
Sbjct: 125 CFSEGKYKKEDTVVMFHCAFQSVKKSIQAYVSRVGGFTVEVRLPFPVNSNEEIISKFREG 184
Query: 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVK 240
+EKG+ +G+ +RLAIIDHITSMPCV++PVR+LVKICR+EGV+QVFVDAAHA+GS+K+DVK
Sbjct: 185 LEKGRANGRTVRLAIIDHITSMPCVLMPVRELVKICREEGVEQVFVDAAHAIGSVKVDVK 244
Query: 241 EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300
EIGAD+YVSNLHKW FCPPS+AF YC+K SD+HHPVVSHEFGNGLPIESAWIGTRDY
Sbjct: 245 EIGADYYVSNLHKWLFCPPSIAFFYCKKRGSESDVHHPVVSHEFGNGLPIESAWIGTRDY 304
Query: 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVG 360
S+QLV+PS + FV+RFEGGI+GIM RNH++A++M MLA+AWGT+LGSPPE+C MVM+G
Sbjct: 305 SSQLVVPSVMEFVNRFEGGIEGIMIRNHDEAVRMGLMLADAWGTNLGSPPEMCVGMVMIG 364
Query: 361 LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD-GIITGYARIS 419
LPS+L V ++DA +LR +LRV + VEVP+++ +D + G +DKD G+IT Y RIS
Sbjct: 365 LPSKLCVESDEDATKLRSYLRVHYSVEVPVYFLGLRDG---EEGVKDKDSGLITAYVRIS 421
Query: 420 HQVYNTLEDYEKFRDAVILLVEEGQVCQML 449
HQ+YN EDYE+ RDA+ LV++ CQ L
Sbjct: 422 HQIYNKTEDYERLRDAITELVKDQMTCQNL 451
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442063|ref|XP_003591309.1| Cysteine desulfurase [Medicago truncatula] gi|355480357|gb|AES61560.1| Cysteine desulfurase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/449 (66%), Positives = 368/449 (81%), Gaps = 4/449 (0%)
Query: 4 EARNGELTHHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQ 63
+ RNG + SKKPKLT IS E+ EFSHHQ VARINNGSFGSCP+S+L Q WQ
Sbjct: 6 DPRNGTVQPD-SKKPKLTHPISSHELLHEFSHHQTAVARINNGSFGSCPRSILTAQTTWQ 64
Query: 64 LKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT 123
L+FLQQPDDF+FN+LR GIL+SR +K+LINADDV EISL+DNATTAAAIVLQQIG F+
Sbjct: 65 LRFLQQPDDFFFNTLRNGILDSRKIIKNLINADDVEEISLIDNATTAAAIVLQQIGHHFS 124
Query: 124 EGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEK 183
G+F RNDTV++ HCA+QAVKKSI+AYV GGSV+EV+LPFP+ S EEII EFKKGIE+
Sbjct: 125 SGKFCRNDTVIIFHCAYQAVKKSIEAYVIPVGGSVIEVELPFPVNSNEEIIAEFKKGIER 184
Query: 184 GKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG 243
GK +G +RLAIIDHITSMP VVIPVR+L+++CR+ VDQVFVD AHA+GS+++DVKEIG
Sbjct: 185 GKINGGRVRLAIIDHITSMPSVVIPVRELIRVCRENEVDQVFVDGAHALGSMEVDVKEIG 244
Query: 244 ADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQ 303
ADFYVSNL+KWFF PPSVAF+YC K+ +D+HHPVV+HE+GNGLP ESAW+G RDYS Q
Sbjct: 245 ADFYVSNLYKWFFSPPSVAFMYCNKNKKLNDVHHPVVAHEYGNGLPAESAWVGMRDYSPQ 304
Query: 304 LVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPS 363
LV+PS + FV+RFEGGI+GIM+RNH +KM ML AWGT+LGSPPE+CA+M+M+GLPS
Sbjct: 305 LVVPSIMEFVNRFEGGIEGIMKRNHNMVVKMGVMLKEAWGTNLGSPPEMCASMIMIGLPS 364
Query: 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423
++RVM +DDALRLR +LRV +EVP++YQA G + ARDKDG ITGY RISHQVY
Sbjct: 365 KIRVMSDDDALRLRFYLRVYHAIEVPVYYQAL---GNGERDARDKDGFITGYVRISHQVY 421
Query: 424 NTLEDYEKFRDAVILLVEEGQVCQMLLTE 452
N ++DY + + A+I L+++G++C L E
Sbjct: 422 NIVDDYNRLKTAIIQLLQDGKICSELPKE 450
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 452 | ||||||
| TAIR|locus:2098068 | 454 | LCD "L-cysteine desulfhydrase" | 0.980 | 0.975 | 0.633 | 1.4e-158 | |
| TAIR|locus:2146829 | 475 | AT5G26600 [Arabidopsis thalian | 0.960 | 0.913 | 0.577 | 1.2e-134 | |
| ASPGD|ASPL0000000448 | 470 | AN6227 [Emericella nidulans (t | 0.477 | 0.459 | 0.312 | 5.6e-26 | |
| CGD|CAL0006134 | 421 | orf19.2988 [Candida albicans ( | 0.696 | 0.748 | 0.265 | 3e-24 | |
| UNIPROTKB|G4NI53 | 449 | MGG_17802 "Uncharacterized pro | 0.712 | 0.717 | 0.275 | 1.6e-20 | |
| POMBASE|SPBC660.12c | 392 | SPBC660.12c "aminotransferase | 0.365 | 0.420 | 0.311 | 2.7e-15 | |
| UNIPROTKB|Q3AG51 | 383 | CHY_0011 "Cysteine desulfurase | 0.515 | 0.608 | 0.25 | 1.2e-07 | |
| TIGR_CMR|CHY_0011 | 383 | CHY_0011 "cysteine desulfurase | 0.515 | 0.608 | 0.25 | 1.2e-07 | |
| TIGR_CMR|CBU_1357 | 405 | CBU_1357 "selenocysteine lyase | 0.404 | 0.451 | 0.232 | 3.3e-05 | |
| TIGR_CMR|CHY_2199 | 393 | CHY_2199 "cysteine desulfurase | 0.469 | 0.539 | 0.234 | 3.4e-05 |
| TAIR|locus:2098068 LCD "L-cysteine desulfhydrase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
Identities = 285/450 (63%), Positives = 357/450 (79%)
Query: 4 EARNGEL---THHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQ 60
E RNG+ H KKP+L ++E++I EF+HHQ GVARINNGSFG CP SVL Q+
Sbjct: 5 ERRNGDSMSHNHRAPKKPRLAGLLTESDIDSEFAHHQTGVARINNGSFGCCPGSVLEAQR 64
Query: 61 KWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120
+WQL++L+QPD+FYFN LR+G+L SR + DLINADDV E+SLVDNATTAAAIVLQ++GR
Sbjct: 65 EWQLRYLRQPDEFYFNGLRRGLLASRTVISDLINADDVDEVSLVDNATTAAAIVLQKVGR 124
Query: 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASXXXXXXXXXXX 180
F+EG++ + DTV+M HCAFQ+VKKSIQAYV+R GGS VEV+LPFP+ S
Sbjct: 125 CFSEGKYKKEDTVVMFHCAFQSVKKSIQAYVSRVGGSTVEVRLPFPVNSNEEIISKFREG 184
Query: 181 XXXXXXXXXMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVK 240
+RLAIIDHITSMPCV++PVR+LVKICR+EGV+QVFVDAAHA+GS+K+DVK
Sbjct: 185 LEKGRANGRTVRLAIIDHITSMPCVLMPVRELVKICREEGVEQVFVDAAHAIGSVKVDVK 244
Query: 241 EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300
EIGAD+YVSNLHKWFFCPPS+AF YC+K SD+HHPVVSHEFGNGLPIESAWIGTRDY
Sbjct: 245 EIGADYYVSNLHKWFFCPPSIAFFYCKKRGSESDVHHPVVSHEFGNGLPIESAWIGTRDY 304
Query: 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVG 360
S+QLV+PS + FV+RFEGG++GIM +NH++A++M MLA+AWGT+LGSPPE+C MVM+G
Sbjct: 305 SSQLVVPSVMEFVNRFEGGMEGIMMKNHDEAVRMGLMLADAWGTNLGSPPEMCVGMVMIG 364
Query: 361 LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD-GIITGYARIS 419
LPS+L V ++DA++LR +LRV + VEVP+ Y +D + G +DKD G+IT Y RIS
Sbjct: 365 LPSKLCVGSDEDAIKLRSYLRVHYSVEVPVFYLGLRDG---EEGVKDKDSGLITAYVRIS 421
Query: 420 HQVYNTLEDYEKFRDAVILLVEEGQVCQML 449
HQVYN EDYE+ RDA+ LV++ CQ L
Sbjct: 422 HQVYNKTEDYERLRDAITELVKDQMTCQNL 451
|
|
| TAIR|locus:2146829 AT5G26600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 260/450 (57%), Positives = 323/450 (71%)
Query: 7 NGELTHHVS---KKPKLTR--CISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQK 61
NG + VS K+PK++ IS +EI EFSHH ARINNGSFG CP S+LA Q+
Sbjct: 33 NGTVESSVSDFVKRPKISHPNYISSSEIESEFSHHDPDFARINNGSFGCCPSSILALQRD 92
Query: 62 WQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121
WQL+FL+QPD FYF+ L+ I +SR+ +K LINA+ E+S+VDNATTAAAIVLQQ
Sbjct: 93 WQLRFLRQPDRFYFDELKPKISDSRSVIKRLINAEHDDEVSIVDNATTAAAIVLQQTAWA 152
Query: 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASXXXXXXXXXXXX 181
F EGRF + D V+MLH A+ +VKKS++AYVTR+GG V EVQLPFP+ S
Sbjct: 153 FREGRFDKGDAVVMLHYAYGSVKKSVEAYVTRSGGHVTEVQLPFPVISADEIIDRFRIGL 212
Query: 182 XXXXXXXXMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE 241
+RLA+IDH+TSMP VVIP+++LVKICR EGVDQVFVDAAH +G + +D+KE
Sbjct: 213 ESGKANGRRVRLALIDHVTSMPSVVIPIKELVKICRREGVDQVFVDAAHGIGCVDVDMKE 272
Query: 242 IGADFYVSNLHKWFFCPPSVAFLYCRKSILS--SDMHHPVVSHEFGNGLPIESAWIGTRD 299
IGADFY SNLHKWFF PPSVAFLYCRKS +D+HHPVVS+E+GNGL +ES+W+GTRD
Sbjct: 273 IGADFYTSNLHKWFFAPPSVAFLYCRKSSNGGVADLHHPVVSNEYGNGLAVESSWVGTRD 332
Query: 300 YSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMV 359
YSAQLV+PS + FV+RFEGGIDGI +RNHE ++M +ML +WGT LG PPE+CA+M+MV
Sbjct: 333 YSAQLVVPSILEFVNRFEGGIDGIKKRNHESVVEMGQMLVKSWGTQLGCPPEMCASMIMV 392
Query: 360 GLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419
GLP L V E D L+LR LR +F +E+PI+++ P D G D ITGY RIS
Sbjct: 393 GLPVCLGVSSESDVLKLRTFLREKFRIEIPIYFRPPGD------GEIDP---ITGYVRIS 443
Query: 420 HQVYNTLEDYEKFRDAVILLVEEGQVCQML 449
QVYN EDY + RDA+ LV +G C L
Sbjct: 444 FQVYNKPEDYHRLRDAINGLVRDGFKCTSL 473
|
|
| ASPGD|ASPL0000000448 AN6227 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 5.6e-26, Sum P(2) = 5.6e-26
Identities = 70/224 (31%), Positives = 113/224 (50%)
Query: 43 INNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILE-SRAAVKDLINADDVGEI 101
+N+GSFG+ P VL QQ Q K L+ D + ++ G+++ SRAA+ L+N V ++
Sbjct: 24 LNHGSFGTYPSQVLEKQQSIQ-KSLESRPDIFIRYIQPGLIDTSRAALAPLLNVP-VSDL 81
Query: 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEV 161
LV NATT VL + T +D + + AV++++ A G + +V
Sbjct: 82 VLVKNATTGVNTVLHNLALTRT---LTADDVIFYFDTVYGAVERALFALKESWGVKLRKV 138
Query: 162 QLPFPLASXXXXXXXXXXXXXXXXXXXXMIRLAIIDHITSMPCVVIPVRKLVKICRDEGV 221
+ FPL +LA+ + + S P + P ++ + C++EGV
Sbjct: 139 KYVFPLEEGGMVKRFREALKSVRKEGLTP-KLAVFETVVSNPGIRFPFEEITRACKEEGV 197
Query: 222 DQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265
+ +D AHA+G IK+D+ +G DF+ SN HKW + P S A LY
Sbjct: 198 LSL-IDGAHAVGMIKLDLAALGVDFFTSNCHKWLYTPRSCAVLY 240
|
|
| CGD|CAL0006134 orf19.2988 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 92/347 (26%), Positives = 155/347 (44%)
Query: 33 FSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL 92
F++ V +N+GS+G P VL +K D F ++ +ES AV +
Sbjct: 17 FTNMDDEVFPVNHGSYGLTPTPVLEKYLDLIVKNASYTDKFMKYGIKDSYVESLKAVGRV 76
Query: 93 INADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT 152
+N D ++ VDNAT+ +L R + + D +++ + A +++
Sbjct: 77 LNCD-YHNLAFVDNATSGVNTIL----RSYP---LKKGDKLVIQSTVYGACGNTVKFLHD 128
Query: 153 RAGGSVVEVQLPFPLASXXXXXXXXXXXXXXXXXXXXMIRLAIIDHITSMPCVVIPVRKL 212
R G + V L +P+ +L + D I+SMP VV P K+
Sbjct: 129 RYGVEFIVVDLNYPITDEEILSKFERVFVEEKP------KLCMFDTISSMPGVVFPYEKM 182
Query: 213 VKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILS 272
K+C+ V + +D AH +G I D+ + DFYV+NLHKWF+ P A LY
Sbjct: 183 TKLCKKYSVLSL-IDGAHGIGCIPQDLGNLKPDFYVTNLHKWFYIPFGCAVLYIDPKH-H 240
Query: 273 SDMHHPVVSHEF---------G---NGLPIESAWI-GTRDYSAQLVIPSAVTFVSRFEGG 319
+ +H +SH + G N L I+ ++ GT+++++ VIP A+ F S G
Sbjct: 241 NVVHTLPISHSYLEDHVKLSDGDQKNRL-IDRFFLYGTKNFASIQVIPEAIKFRSEVCDG 299
Query: 320 IDGIMQRNHEQALKMARMLANAWGTSL--GSPPEICAAMVMVGLPSR 364
I H A ++ +++ WGTS + + MV V +P++
Sbjct: 300 ETKIYDYCHGLAKQVGELVSRKWGTSYLDQKGSTLISTMVTVEVPTQ 346
|
|
| UNIPROTKB|G4NI53 MGG_17802 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 96/349 (27%), Positives = 161/349 (46%)
Query: 43 INNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS 102
+N+GSFG P+ V A ++ +Q K ++PD + + + + SRAAV L+ D I+
Sbjct: 42 MNHGSFGVIPRPVHAARRYYQDKSEERPDVWIRYNWSQLLEGSRAAVAPLLGVDK-DTIA 100
Query: 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV--E 160
V NAT VL+ + + + + D +L + + A K++Q + + G V
Sbjct: 101 FVPNATVGVNTVLRNLV--WNDDK---KDEILYFNTIYAACGKTVQYMIEISRGHVSGRS 155
Query: 161 VQLPFPLASXXXXXXXXXXXXXXXXXXXXMIRLAIIDHITSMPCVVIPVRKLVKICRDEG 220
V L +PL R A+ID ++S+P V +P LV++C DEG
Sbjct: 156 VPLEYPLTDDELVALFKKGIQDCRAAGKRP-RAAVIDTVSSIPAVRLPFEALVQVCHDEG 214
Query: 221 VDQVFVDAAHAMGSIKIDVKEIGA----DFYVSNLHKWFFCPPSVAFLYCRK---SILSS 273
+ + VD A +G I D+K +G DF+++N HKW + P A L+ K +++ S
Sbjct: 215 ILSI-VDGAQGVGMI--DLKHLGTQVKPDFFITNCHKWLYTPRGCAVLHVPKHNQALMRS 271
Query: 274 DMHHPVVSHEFGNGLP--IES-AWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330
+ G G P I++ A+ T D S + + AV ++ GG D +++
Sbjct: 272 TLPTSWGWVPSGEGDPDFIDNFAFASTLDNSNYMAVQHAVQWIQEALGGEDAVIEYMMSL 331
Query: 331 ALKMARMLANAWGTSLGSPPE---ICAAMVMVGLPSRLRVMGEDDALRL 376
K M+A GT + E AM V LP L + G + + ++
Sbjct: 332 NKKGGNMVAEMLGTKVLDNAEGTLTNCAMSNVLLP--LGIKGRESSAKV 378
|
|
| POMBASE|SPBC660.12c SPBC660.12c "aminotransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 58/186 (31%), Positives = 91/186 (48%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
R I D ++SMP ++ P K+VK+C+ + + +D AHA+G I +++ + DF +N
Sbjct: 159 RAFICDILSSMPVILFPWEKVVKLCKKYNIVSI-IDGAHAIGHIPMNLANVDPDFLFTNA 217
Query: 252 HKWFFCPPSVAFLYCRKSILSSDMHHPV--VSHEFGNGL-PIESAWIGT----------R 298
HKW P + LY +S+ H+ + + +G GL ES + T +
Sbjct: 218 HKWLNSPAACTVLY-----VSAKNHNLIEALPLSYGYGLREKESIAVDTLTNRFVNSFKQ 272
Query: 299 DYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVM 358
D + + A+ F GG + I Q HE ALK A +++ GTS PP AMV
Sbjct: 273 DLPKFIAVGEAIKFRKSI-GGEEKIQQYCHEIALKGAEIISKELGTSFIKPP-YPVAMVN 330
Query: 359 VGLPSR 364
V +P R
Sbjct: 331 VEVPLR 336
|
|
| UNIPROTKB|Q3AG51 CHY_0011 "Cysteine desulfurase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 65/260 (25%), Positives = 106/260 (40%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
R ++ H +++ + PV ++ KICR+ GV + VDAA ++G+I +DV+
Sbjct: 141 RAVVVTHASNVLGCITPVAEVGKICREAGV-ALIVDAAQSLGTIPVDVQSYNISLLAFTG 199
Query: 252 HKWFFCPPSVAFLYCR---KSILSSDMHHPVVSHEFGNGLPIE----SAWIGTRDYSAQL 304
HK + P LY + +L + H LP E GT +
Sbjct: 200 HKGLYGPQGTGGLYIAPEWEKVLKTLKEGGTGGHS-EEELPPEILPDKYESGTLNTIGIA 258
Query: 305 VIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAA-MVMVGLPS 363
+ + V FV + G++ I Q + K+ + L LG PE A +V P
Sbjct: 259 GLKAGVEFVLKI--GVEKIFQHEKKLTRKLYQGLKELGAEILGPDPENDRAPLVSFNFPG 316
Query: 364 RLRVMGEDDALRLRGHLRVRFGVEV-PIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422
DA + L + + P + APK AG D+ G R S
Sbjct: 317 A-------DAATVSFMLDKLYDIATRPGLHCAPK--AHEVAGTLDR-----GAVRASFSY 362
Query: 423 YNTLEDYEKFRDAVILLVEE 442
+NT E+ E+F +A+ + +E
Sbjct: 363 FNTEEEVEEFLEAIKEIKDE 382
|
|
| TIGR_CMR|CHY_0011 CHY_0011 "cysteine desulfurase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 65/260 (25%), Positives = 106/260 (40%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
R ++ H +++ + PV ++ KICR+ GV + VDAA ++G+I +DV+
Sbjct: 141 RAVVVTHASNVLGCITPVAEVGKICREAGV-ALIVDAAQSLGTIPVDVQSYNISLLAFTG 199
Query: 252 HKWFFCPPSVAFLYCR---KSILSSDMHHPVVSHEFGNGLPIE----SAWIGTRDYSAQL 304
HK + P LY + +L + H LP E GT +
Sbjct: 200 HKGLYGPQGTGGLYIAPEWEKVLKTLKEGGTGGHS-EEELPPEILPDKYESGTLNTIGIA 258
Query: 305 VIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAA-MVMVGLPS 363
+ + V FV + G++ I Q + K+ + L LG PE A +V P
Sbjct: 259 GLKAGVEFVLKI--GVEKIFQHEKKLTRKLYQGLKELGAEILGPDPENDRAPLVSFNFPG 316
Query: 364 RLRVMGEDDALRLRGHLRVRFGVEV-PIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422
DA + L + + P + APK AG D+ G R S
Sbjct: 317 A-------DAATVSFMLDKLYDIATRPGLHCAPK--AHEVAGTLDR-----GAVRASFSY 362
Query: 423 YNTLEDYEKFRDAVILLVEE 442
+NT E+ E+F +A+ + +E
Sbjct: 363 FNTEEEVEEFLEAIKEIKDE 382
|
|
| TIGR_CMR|CBU_1357 CBU_1357 "selenocysteine lyase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 47/202 (23%), Positives = 93/202 (46%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
+L + HI+++ V PV+ ++++ + V +D A A+ ++DV+++ DFYV +
Sbjct: 165 KLVGLIHISNVLGTVNPVKDMIQLAH-QNKTPVLLDGAQAISHREVDVQDLDCDFYVFSS 223
Query: 252 HKWFFCPPSVAFLYCRKSILSS--------DMHHPVVSHEFG-NGLPIESAWIGTRDYSA 302
HK + P V LY + L + DM V + N +P + GT +
Sbjct: 224 HK-LYGPTGVGVLYGKAKWLETMPPYQGGGDMISRVSFEKTDYNVVPYKFE-AGTPNMGG 281
Query: 303 QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL-GSPPEICAAMVMV-- 359
+ + +A+ +V+R G + I +E A L G + G+ P+ +A+ V
Sbjct: 282 VIGMGAAIDYVTRI--GFEKIKLHENELMCYAAEQLQKIPGLRIIGNAPDKASAISFVMA 339
Query: 360 -GLPSRLRVMGEDDALRLR-GH 379
P + + +++ + +R GH
Sbjct: 340 QAHPHDISTILDNEGIAIRAGH 361
|
|
| TIGR_CMR|CHY_2199 CHY_2199 "cysteine desulfurase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 54/230 (23%), Positives = 92/230 (40%)
Query: 43 INNGSFGSCPKSVLADQQKWQLKFLQQPDDFY-FN-SLRKGILESRAAVKDLINADDVGE 100
+++G+ + VL + + + P + F RK I ++R V INA D GE
Sbjct: 6 LDHGATTPLSREVLEEMLPYLTEKFGNPSSIHAFGREARKAIEDAREKVAKAINASDPGE 65
Query: 101 ISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160
I T A + ++ I R + H+ + ++ AV + A + + G E
Sbjct: 66 IVFTGGGTEADNLAIKGIARAYK----HKGNHIITSAVEHHAVLDACLA-LQKEG---FE 117
Query: 161 VQLPFPLASXXXXXXXXXXXXXXXXXXXXMIRLAIIDHITSMPCVVIPVRKLVKICRDEG 220
V + P+ L I H + + P+ ++ +I R++G
Sbjct: 118 VTV-LPVDKYGMVSVEDVKKAITDKTI-----LITIMHANNEVGTIQPIAEIGEIAREKG 171
Query: 221 VDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270
V DA +G I +DVKE+ D + HK + P V LY RK +
Sbjct: 172 V-YFHTDAVQTVGKIPVDVKELKVDLLSLSAHK-IYGPKGVGALYVRKGL 219
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 452 | |||
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 8e-36 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 2e-18 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 3e-14 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 5e-12 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 6e-11 | |
| PRK09331 | 387 | PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; | 3e-10 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 3e-10 | |
| PLN02855 | 424 | PLN02855, PLN02855, Bifunctional selenocysteine ly | 5e-10 | |
| cd06452 | 361 | cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase | 4e-09 | |
| TIGR01976 | 397 | TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa | 5e-07 | |
| PRK09295 | 406 | PRK09295, PRK09295, bifunctional cysteine desulfur | 6e-07 | |
| COG1103 | 382 | COG1103, COG1103, Archaea-specific pyridoxal phosp | 6e-07 | |
| TIGR02539 | 370 | TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRN | 4e-06 | |
| COG0075 | 383 | COG0075, COG0075, Serine-pyruvate aminotransferase | 7e-06 | |
| TIGR03403 | 382 | TIGR03403, nifS_epsilon, cysteine desulfurase, Nif | 1e-05 | |
| COG1104 | 386 | COG1104, NifS, Cysteine sulfinate desulfinase/cyst | 2e-05 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 4e-05 | |
| TIGR04343 | 370 | TIGR04343, egtE_PLP_lyase, ergothioneine biosynthe | 6e-05 | |
| TIGR03402 | 379 | TIGR03402, FeS_nifS, cysteine desulfurase NifS | 8e-05 | |
| TIGR03301 | 355 | TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin | 3e-04 | |
| PLN02651 | 364 | PLN02651, PLN02651, cysteine desulfurase | 3e-04 | |
| PRK14012 | 404 | PRK14012, PRK14012, cysteine desulfurase; Provisio | 0.002 | |
| TIGR02006 | 402 | TIGR02006, IscS, cysteine desulfurase IscS | 0.003 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 8e-36
Identities = 78/368 (21%), Positives = 131/368 (35%), Gaps = 49/368 (13%)
Query: 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQ 141
+R AV +NAD EI T A +V + +GR G D +++
Sbjct: 68 YEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPG-----DEIVVSDLEHH 122
Query: 142 AVKKSIQAYVTRAGGSVVEVQL-PFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHIT 200
+ Q R G V + L L + + K +L + H++
Sbjct: 123 SNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALE----------KLITPKTKLVALSHVS 172
Query: 201 SMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS 260
++ V PV+++ ++ + G V VDAA A G + IDV+E+G DF + HKW P
Sbjct: 173 NVTGTVNPVKEIAELAHEHGAL-VLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTG 231
Query: 261 VAFLYCRKSILSSDMHHPVVS--------HEFGNGLPIESAW---IGTRDYSAQLVIPSA 309
+ LY RK +L P + E GT + + + + +A
Sbjct: 232 IGVLYVRKELLEE--LEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAA 289
Query: 310 VTFVSRFEGGIDGIMQRNHE-QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVM 368
+ + E G++ I E + + G P +V + +
Sbjct: 290 LDY--LLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVK---GIH 344
Query: 369 GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED 428
D A L G+ V G A + + R S +YNT ED
Sbjct: 345 PHDVATLLDEK-----GIAVR--------AGHHCAQPLHRLLGVDATIRASLHLYNTEED 391
Query: 429 YEKFRDAV 436
++ +A+
Sbjct: 392 VDRLLEAL 399
|
Length = 405 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 89/363 (24%), Positives = 144/363 (39%), Gaps = 53/363 (14%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAV 143
E+R V + INA EI T A +V +GR G D +L+ A
Sbjct: 47 EAREKVAEFINAPSDEEIIFTSGTTEAINLVAISLGRSLKPG-----DEILVTEMEHHAN 101
Query: 144 KKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSM 202
Q + + G+ V V P+ + ++ +K + +L I H++++
Sbjct: 102 LVPWQ-ELAKRTGATVRV---IPVDPNGLLDLDALEKLLTPR------TKLVAITHVSNV 151
Query: 203 PCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVA 262
V PV ++ K+ + G V VDAA A+G IDV+ +G DF + HK + P +
Sbjct: 152 TGTVNPVEEIGKLAHEYGA-LVVVDAAQAVGHRPIDVQALGVDFLAFSGHK-LYGPTGIG 209
Query: 263 FLYCRKSIL--------SSDMHHPVVSHEFG-NGLP--IESAWIGTRDYSAQLVIPSAVT 311
LY R+ +L M V E P E+ GT + + + + +A+
Sbjct: 210 VLYGRRDLLEKLPPLLGGGGMIDTVSLQETTFADAPSKFEA---GTPNIAGIIGLGAALD 266
Query: 312 FVSRFEGGIDGIMQRNHEQA-LKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE 370
+++ E G++ I + E A R+LA G P E +++ P V
Sbjct: 267 YLA--EIGLEAIEKHERELAAYLYERLLAIPGIRLYGPPAERRPSIISFNFP---GVHPH 321
Query: 371 DDALRLRGH-LRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429
D A L + VR G H+ A QP G + R S YNT E+
Sbjct: 322 DVATLLDERGIAVRSG-----HHCA-----QPLMVRLGLGGTL----RASLYFYNTEEEV 367
Query: 430 EKF 432
++
Sbjct: 368 DRL 370
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 32/196 (16%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVL---MLHCA- 139
+R V INA EI N T A +V +GR G D ++ M H +
Sbjct: 47 AAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPG-----DEIVTSVMEHHSN 101
Query: 140 ---FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINE-FKKGIEKGKKDGKMIRLAI 195
+Q + + R G + V P+ + ++ E +K + + +L
Sbjct: 102 IVPWQQLAE-------RTGAKLKVV----PVDDDGQLDLEALEKLLTER------TKLVA 144
Query: 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWF 255
+ H++++ + PV+++ +I + GV V VD A + G + +DV+++G DF + HK
Sbjct: 145 VTHVSNVLGTINPVKEIGEIAHEAGV-PVLVDGAQSAGHMPVDVQDLGCDFLAFSGHK-M 202
Query: 256 FCPPSVAFLYCRKSIL 271
P + LY ++ +L
Sbjct: 203 LGPTGIGVLYGKEELL 218
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-12
Identities = 57/274 (20%), Positives = 101/274 (36%), Gaps = 61/274 (22%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVL---MLHCA- 139
R V INA EI T + +V G D ++ M H A
Sbjct: 66 AVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSN----LKAGDEIVISEMEHHAN 121
Query: 140 ---FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195
+Q + G+ ++ PL + + +++ +K + + K L
Sbjct: 122 IVPWQ--------LLAERTGATLKF---IPLDDDGTLDLDDLEKLLTEKTK------LVA 164
Query: 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWF 255
I H++++ V PV ++ K+ G +V VD A A+ + +DV+ + DFYV + HK
Sbjct: 165 ITHVSNVLGTVNPVEEIAKLAHQVGA-KVLVDGAQAVPHMPVDVQALDCDFYVFSGHK-M 222
Query: 256 FCPPSVAFLYCRKSILSS--------------DMHHPV---VSHEFGNGLPIESAWIGTR 298
+ P + LY ++ +L H+F G P + IG
Sbjct: 223 YGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLG 282
Query: 299 DYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332
+A+ ++ G++ I HE L
Sbjct: 283 ---------AAIDYLEAI--GLENI--EAHEHEL 303
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQ 141
+ E+R + L NA + +NATTA I L+ G D V+
Sbjct: 46 VEETRQLLAKLFNAPSSAHVVFTNNATTALNIALK--------GLLKEGDHVITTPMEHN 97
Query: 142 AVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITS 201
+V + ++ + G VE+ + + + E + ++ K + K+I ++ H ++
Sbjct: 98 SVARPLECLKEQIG---VEITI---VKCDNEGLISPERIKRAIKTNTKLI---VVSHASN 148
Query: 202 MPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSV 261
+ ++P+ ++ ++ ++ G+ + +DAA G I ID+ E+ D HK P
Sbjct: 149 VTGTILPIEEIGELAQENGIFFI-LDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGT 207
Query: 262 AFLYCRKSI 270
LY R+ I
Sbjct: 208 GGLYIREGI 216
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|236469 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 151 VTRAGGSVVEVQLPFPLASEEEIINE-FKKGIEKGKKD-GKMIRLAIIDHITSMPCVVIP 208
RAG +V EV P E +I E + + IE+ K++ GK LA++ H+ +
Sbjct: 119 AERAGLNVREV--PKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD 176
Query: 209 VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHK 253
+K+ K+ + G+ ++ A+ +G + +D K++GADF V + HK
Sbjct: 177 AKKVAKVAHEYGI-PFLLNGAYTVGRMPVDGKKLGADFIVGSGHK 220
|
Length = 387 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-10
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHA---MGSIKIDVKEIGADFY 247
+ L +I T+ V++P++++ KI ++ G+ + VDAA A + + + E GAD
Sbjct: 93 VALIVITPNTTSGGVLVPLKEIRKIAKEYGI-LLLVDAASAGGASPAPGVLIPEGGADVV 151
Query: 248 VSNLHKWFFCPP 259
+LHK
Sbjct: 152 TFSLHKNLGGEG 163
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAV 143
+R V INA EI NAT A +V G + D V++ +
Sbjct: 80 LARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPG----DEVILSVAEHHSN 135
Query: 144 KKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSM 202
Q + G + V L +E + + + K+ + + +L H++++
Sbjct: 136 IVPWQLVAQKTGAVLKFV----GLTPDEVLDVEQLKELLSE------KTKLVATHHVSNV 185
Query: 203 PCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS-V 261
++PV +V G +V VDA ++ + +DV+ +GADF V++ HK C P+ +
Sbjct: 186 LGSILPVEDIVHWAHAVGA-KVLVDACQSVPHMPVDVQTLGADFLVASSHK--MCGPTGI 242
Query: 262 AFLYCRKSILSS 273
FL+ + +L S
Sbjct: 243 GFLWGKSDLLES 254
|
Length = 424 |
| >gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 151 VTRAGGSVVEVQLPFPLASEEEIINE-FKKGIEKGKKD-GKMIRLAIIDHITSMPCVVIP 208
RAG +V EV P E I E + + IE+ K + GK LA++ H+ +
Sbjct: 100 AERAGLNVREV--PNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD 157
Query: 209 VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHK 253
+K+ K+C + GV + ++ A+ +G + + KE+GADF V + HK
Sbjct: 158 AKKIAKVCHEYGV-PLLLNGAYTVGRMPVSGKELGADFIVGSGHK 201
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. Length = 361 |
| >gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 61/292 (20%), Positives = 106/292 (36%), Gaps = 33/292 (11%)
Query: 27 AEIRDEF-SHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGIL-- 83
+R +F + +N + P+SV + Y +S R +
Sbjct: 4 EAVRGQFPALADGDRVFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVD 63
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAV 143
++R AV DL+NAD E+ NAT+ ++ + I R + G D V++ +A
Sbjct: 64 DAREAVADLLNADP-PEVVFGANATSLTFLLSRAISRRWGPG-----DEVIVTRLDHEAN 117
Query: 144 KKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMP 203
RAG V A+ E ++ + RL + ++
Sbjct: 118 ISPWLQAAERAGAKVK--WARVDEATGELHPDDLASLL------SPRTRLVAVTAASNTL 169
Query: 204 CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
++ + + ++ G V VDA H IDV+ GADF + +K+F P +
Sbjct: 170 GSIVDLAAITELVHAAGA-LVVVDAVHYAPHGLIDVQATGADFLTCSAYKFF--GPHMGI 226
Query: 264 LYCRKSILSSDMHHPVVSHEFGNGLP--IE---------SAWIGTRDYSAQL 304
L+ R +L + P + P E + + DY A L
Sbjct: 227 LWGRPELLMNLP--PYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGL 276
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397 |
| >gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
RL I H++++ P+ +++ + G +V VD A A+ +DV+ + DFYV +
Sbjct: 166 RLLAITHVSNVLGTENPLAEMIALAHQHG-AKVLVDGAQAVMHHPVDVQALDCDFYVFSG 224
Query: 252 HKWFFCPPSVAFLYCRKSIL 271
HK + P + LY ++++L
Sbjct: 225 HK-LYGPTGIGILYVKEALL 243
|
Length = 406 |
| >gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 153 RAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD-GKMIRLAIIDHITSMPCVVIPVR 210
RAG +V EV P E +I + + IE+ K + G LA++ H+ + +
Sbjct: 119 RAGLNVAEV--PNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAK 176
Query: 211 KLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHK 253
K+ KICR+ GV + ++ A+ +G + + KEIGADF V + HK
Sbjct: 177 KVAKICREYGV-PLLLNCAYTVGRMPVSGKEIGADFIVGSGHK 218
|
Length = 382 |
| >gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 153 RAGGSVVEVQLPFPLASEEEI-INEFKKGIEK-GKKDGKMIRLAIIDHITSMPCVVIPVR 210
RAG +V EV P E ++ + + IE+ + GK LA++ H+ +
Sbjct: 109 RAGLNVKEV--PHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAG 166
Query: 211 KLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHK 253
K+ K+CR++GV + ++ A+ +G + + KEIGADF V + HK
Sbjct: 167 KVAKVCREKGV-PLLLNCAYTVGRMPVSAKEIGADFIVGSGHK 208
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. Length = 370 |
| >gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 205 VVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFL 264
V+ P++++ K ++ G + VDA ++G + V E G D ++ K PP +AF+
Sbjct: 146 VLNPLKEIAKAAKEHGA-LLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFV 204
Query: 265 YCRKSILS 272
+ L
Sbjct: 205 AVSERALE 212
|
Length = 383 |
| >gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 205 VVIPVRKLVKICRDEGVDQVF-VDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
++ P++++ +IC++ GV +F DA A+G I +DV++ G DF + HK F P V
Sbjct: 155 MIFPIKEIGEICKERGV--LFHTDAVQAIGKIPVDVQKAGVDFLSFSAHK-FHGPKGVGG 211
Query: 264 LYCRKSILSSDMHH 277
LY RK + + + H
Sbjct: 212 LYIRKGVELTPLFH 225
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382 |
| >gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 205 VVIPVRKLVKICRDEGVDQVF-VDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
+ P+ ++ +IC++ G+ +F VDA A+G I ID++E+G D + HK F P +
Sbjct: 156 TIQPIAEIGEICKERGI--LFHVDAVQAVGKIPIDLEELGVDLLSFSAHK-FGGPKGIGA 212
Query: 264 LYCRKSI 270
LY R +
Sbjct: 213 LYVRPGV 219
|
Length = 386 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 36/215 (16%), Positives = 63/215 (29%), Gaps = 28/215 (13%)
Query: 194 AIIDHITSMPCVVI-----------PVRKLVKICRDEGVDQVFVDAAHAMGSI------- 235
ID T VV + +L I + G+ + VDAA G +
Sbjct: 200 EAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIW-LHVDAAFG-GFLLPFLEPD 257
Query: 236 -KIDVKEIGADFYVSNLHKWFFCPPSV-AFLYCRKSILSSDMHHPVVSHEFGNGLPIESA 293
+ D G D + HK+ P L+ + L + + G I +
Sbjct: 258 GRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFAD---YYLPGGGIPNF 314
Query: 294 WI-GTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI 352
I G+R + + G ++ R E A +A L L + PE+
Sbjct: 315 TILGSR--PGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPEL 372
Query: 353 CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVE 387
+ + R + + +
Sbjct: 373 PIVAFRLKDDEDTLADLSERLDRRGWQVPAQLLPK 407
|
Length = 460 |
| >gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent enzyme EgtE | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLH 252
L + + S V P + ++CR GV V VDAA A+G + V GAD Y S+
Sbjct: 146 LVHLTVVGSHRGTVQPAAAVAELCRAAGVPLV-VDAAQALGHLDCAV---GADAYYSSSR 201
Query: 253 KWFFCPPSVAFLYCR 267
KW P V L R
Sbjct: 202 KWLAGPRGVGVLAVR 216
|
Members of this protein family are the pyridoxal phosphate-dependent enzyme EgtE, which catalyzes the final step in the biosynthesis of ergothioneine [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 370 |
| >gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 205 VVIPVRKLVKICRDEGVDQVF-VDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
+ P+ ++ +I ++ G +F DA A+G I ID+KE+ D + HK P V
Sbjct: 151 TIFPIEEIGEIAKERGA--LFHTDAVQAVGKIPIDLKEMNIDMLSLSGHK-LHGPKGVGA 207
Query: 264 LYCRKSI 270
LY RK
Sbjct: 208 LYIRKGT 214
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379 |
| >gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLH 252
+A + H T+ ++ P+ + K+ R G + VDA + G+I ID++E+ D +++ +
Sbjct: 129 VATVHHETTTG-ILNPLEAIAKVARSHGA-VLIVDAMSSFGAIPIDIEELDVDALIASAN 186
Query: 253 KWFFCPPSVAFLYCRKSIL 271
K P F+ R+ +L
Sbjct: 187 KCLEGVPGFGFVIARRDLL 205
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355 |
| >gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 205 VVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFL 264
V+ PV ++ ++CR++ V DAA A+G I +DV ++G D + HK + P V L
Sbjct: 153 VIQPVEEIGELCREKKV-LFHTDAAQAVGKIPVDVDDLGVDLMSISGHK-IYGPKGVGAL 210
Query: 265 YCRK 268
Y R+
Sbjct: 211 YVRR 214
|
Length = 364 |
| >gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 205 VVIPVRKLVKICRDEGVDQVF-VDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
V+ + + +ICR+ G+ +F VDAA ++G + ID+ ++ D + HK + P +
Sbjct: 159 VIQDIAAIGEICRERGI--IFHVDAAQSVGKVPIDLSKLKVDLMSFSAHK-IYGPKGIGA 215
Query: 264 LYCRK 268
LY R+
Sbjct: 216 LYVRR 220
|
Length = 404 |
| >gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 27/189 (14%)
Query: 85 SRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN--DTVLMLHCAFQA 142
+R V +LI AD EI AT + + ++ I F+++ + ++ +A
Sbjct: 52 ARNQVAELIGADS-REIVFTSGATESNNLAIKGIAH------FYKSKGNHIITSKTEHKA 104
Query: 143 VKKSIQAYVTRAGGSVVEVQLPFPLASEEEIIN--EFKKGIEKGKKDGKMIRLAIIDHIT 200
V + + Y+ R G V + +I+ E K I I ++I+ H+
Sbjct: 105 VLDTCR-YLEREGFEVTYLPP-----KSNGLIDLEELKAAIRD-----DTILVSIM-HVN 152
Query: 201 SMPCVVIPVRKLVKICRDEGVDQVF-VDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPP 259
+ V+ + + +ICR+ V F VDAA ++G I I+V E+ D + HK + P
Sbjct: 153 NEIGVIQDIAAIGEICRERKV--FFHVDAAQSVGKIPINVNELKVDLMSISGHK-IYGPK 209
Query: 260 SVAFLYCRK 268
+ LY R+
Sbjct: 210 GIGALYVRR 218
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 452 | |||
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 100.0 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 100.0 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 100.0 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 100.0 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 100.0 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 100.0 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.98 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.97 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.97 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.97 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.97 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.97 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.97 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.97 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.97 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.97 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.97 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.97 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.97 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.96 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.96 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.96 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.96 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.96 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.96 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.96 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.96 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.96 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.96 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK07324 | 373 | transaminase; Validated | 99.96 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.96 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.96 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.96 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.96 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.96 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.96 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.96 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.96 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.96 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.96 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.96 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.96 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.96 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.96 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.96 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.96 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.96 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.96 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.96 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.96 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.96 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.96 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.96 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.95 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PLN02187 | 462 | rooty/superroot1 | 99.95 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.95 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.95 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.95 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.95 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.95 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.95 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.95 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.95 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.95 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.95 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.95 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.95 | |
| PLN02656 | 409 | tyrosine transaminase | 99.95 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.95 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.95 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.95 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.95 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.95 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| PLN02721 | 353 | threonine aldolase | 99.95 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.95 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.95 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.95 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.95 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.95 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.95 | |
| PLN02263 | 470 | serine decarboxylase | 99.95 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.95 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.95 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.95 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.95 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.95 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.95 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.95 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.95 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.94 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.94 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.94 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.94 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.94 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.94 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.94 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.94 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.94 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.94 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.94 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.94 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.94 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.94 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.94 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.94 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.94 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.93 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.93 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.93 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.93 | |
| PLN02231 | 534 | alanine transaminase | 99.93 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.93 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.93 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.93 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.93 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.93 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.93 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.93 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.93 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.93 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.93 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.93 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.93 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.93 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.92 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.92 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.92 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.92 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.92 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.92 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.92 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.92 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.92 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.92 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.92 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.92 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.92 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.92 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.92 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.92 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.92 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.92 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.92 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.92 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.92 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.91 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.91 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.91 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.91 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.91 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.91 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.91 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.91 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.91 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.91 | |
| PLN02368 | 407 | alanine transaminase | 99.91 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.91 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.91 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.9 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.9 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.9 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.9 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.9 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.9 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.9 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.9 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.9 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.9 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.9 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.9 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.9 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.89 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.89 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.89 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.89 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.89 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.89 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.89 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.89 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.88 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.88 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.88 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.88 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.88 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.88 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.88 | |
| PLN02397 | 423 | aspartate transaminase | 99.88 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.87 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.87 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.87 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.87 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.87 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.87 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.86 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.86 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.86 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.86 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.86 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.86 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.86 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.85 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.85 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.85 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.85 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.85 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.85 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.85 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.84 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.84 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.84 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.84 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.84 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.84 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.83 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.83 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.83 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.83 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.83 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.82 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.82 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.82 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.82 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.82 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.82 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.8 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.8 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.8 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.8 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.8 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.8 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.8 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.79 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.79 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.79 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.79 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.79 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.79 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.78 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.78 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.78 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.78 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.78 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.78 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.78 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.77 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.77 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.77 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.76 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.76 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.76 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.76 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.75 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.75 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.75 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.75 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.75 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.75 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.75 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.74 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.74 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.74 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.74 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.74 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.74 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.74 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.73 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.73 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.73 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.73 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.73 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.73 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.73 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.72 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.72 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.72 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.72 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.72 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.72 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.71 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.71 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.71 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.7 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.69 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.69 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.69 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.69 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.68 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.67 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.67 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.66 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.65 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 99.64 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.62 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.61 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.58 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.57 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.56 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.56 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.53 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.51 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.5 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.5 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.5 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.47 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.47 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.46 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.45 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.41 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.39 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 99.32 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.2 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.06 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.82 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.79 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.75 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.75 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 98.71 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.64 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.86 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 97.12 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 97.11 | |
| KOG0630 | 838 | consensus Predicted pyridoxal-dependent decarboxyl | 93.06 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 83.4 |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=412.60 Aligned_cols=383 Identities=21% Similarity=0.324 Sum_probs=329.8
Q ss_pred CCCHHHHHhhhccCCC----CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh---hhhhhhHHHHHHHHHHHhHhCC
Q 012991 23 CISEAEIRDEFSHHQH----GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF---YFNSLRKGILESRAAVKDLINA 95 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~----~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~ 95 (452)
.+++..+|+.||.+.+ +.+|||++..++.|..|++++.++...++.+.++. ......+.++++|+.+++++|+
T Consensus 2 ~~~~~~~r~~fp~l~~~~~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a 81 (405)
T COG0520 2 MFDVAAVRADFPALKREVGKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNA 81 (405)
T ss_pred CCChHHHHhhCHHHhhccCCCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 4678889999998655 47999999999999999999999998887777642 3355677899999999999999
Q ss_pred CCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-H
Q 012991 96 DDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-I 174 (452)
Q Consensus 96 ~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~ 174 (452)
+..++|+||.|+|+++++++.++.+. +++||+||+++.+|+|+..+|..++++.|+++++++ .++++.+ .
T Consensus 82 ~~~~eIvft~~tT~aln~va~~l~~~-----~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~----~~~~g~~~~ 152 (405)
T COG0520 82 DSSDEIVFTRGTTEALNLVARGLGRS-----LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIP----LDDDGLLDL 152 (405)
T ss_pred CCCCeEEEeCChhHHHHHHHHHhhhh-----hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEe----cCCCCCcCH
Confidence 73489999999999999999988532 588999999999999999999999999999999995 4556666 8
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCccc
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 254 (452)
+++++.+ +++|++|.+++.+|.||.+.|+++|+++||++|+ +++||++|++|+.++|++.+++||+.+|+|||
T Consensus 153 ~~~~~~i------~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga-~v~VDaaq~~~h~~idv~~l~~Df~afsgHKw 225 (405)
T COG0520 153 DALEKLI------TPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGA-LVLVDAAQAAGHLPIDVQELGCDFLAFSGHKW 225 (405)
T ss_pred HHHHHhc------CCCceEEEEECccccccccchHHHHHHHHHHcCC-EEEEECccccCccCCCchhcCCCEEEEccccc
Confidence 9999988 7999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred CcCCCCcEEEEEecCccccCCCCCceeccCCC-----------CcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 255 FFCPPSVAFLYCRKSILSSDMHHPVVSHEFGN-----------GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 255 l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
++||.|+|++|+++++++. +.|........ ..+...++.||+++...+++.++++++.++ |.+++
T Consensus 226 l~gP~GiGvLy~r~~~l~~--l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~i--g~~~i 301 (405)
T COG0520 226 LLGPTGIGVLYVRKELLEE--LEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEI--GMEAI 301 (405)
T ss_pred ccCCCceEEEEEchHHHhh--cCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHH--hHHHH
Confidence 9999999999999999987 35543111100 112345678999999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLGSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
.++.+++.+++.+.|.+++++++++++. .+.+++.|.++ +..+.++...|.++ ||.++.+++|..
T Consensus 302 ~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~-------~~~~~dv~~~L~~~-gI~vr~g~~ca~------ 367 (405)
T COG0520 302 EAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVK-------GIHPHDVATLLDEK-GIAVRAGHHCAQ------ 367 (405)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeC-------CCCHHHHHHHHHhC-CeEEEecccccc------
Confidence 9999999999999999999999988775 56899999996 66889999999876 899998776532
Q ss_pred CCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 403 AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++.+. ......+|+|+++|||.+|||+|+++|+++.+
T Consensus 368 -p~~~~-~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 368 -PLHRL-LGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred -HHHHh-cCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 22222 22344599999999999999999999999864
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=366.47 Aligned_cols=383 Identities=17% Similarity=0.266 Sum_probs=309.0
Q ss_pred CCCCHHHHHhhhccCCC-----CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHh
Q 012991 22 RCISEAEIRDEFSHHQH-----GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLI 93 (452)
Q Consensus 22 ~~~~~~~ir~~~~~~~~-----~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~ 93 (452)
|+++++.+|++||.... +++|||+++.++.|++|++++.+++.....++.. .......+.++++|+.+++++
T Consensus 1 ~~~~~~~~r~~fp~~~~~~~~~~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 80 (406)
T PRK09295 1 MTFSVEKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI 80 (406)
T ss_pred CCCChHHHHhhCccccCcCCCCceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc
Confidence 35678899999998643 5899999999999999999999998765444422 223456778899999999999
Q ss_pred CCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 94 NADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 94 ~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
|+.++++|+||+|+|+++++++.++... .+++||+|++++++|+++...|..+++..|++++.+++ +.++.+
T Consensus 81 ~~~~~~~v~~t~g~t~~l~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~----~~~~~~ 152 (406)
T PRK09295 81 NARSAEELVFVRGTTEGINLVANSWGNS----NVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPL----NPDGTL 152 (406)
T ss_pred CcCCCCeEEEeCCHHHHHHHHHHHhhhh----cCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEec----CCCCCC
Confidence 9844689999999999999999876321 25789999999999999988998888889999999965 333444
Q ss_pred -HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCc
Q 012991 174 -INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLH 252 (452)
Q Consensus 174 -~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~ 252 (452)
+++|++++ ++++++|++++++|+||.+.|+++|.++|+++|+ ++++|++|+.|..++++..+++|++++|+|
T Consensus 153 d~~~l~~~i------~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~-~vivD~a~~~g~~~~~~~~~~~D~~~~s~~ 225 (406)
T PRK09295 153 QLETLPALF------DERTRLLAITHVSNVLGTENPLAEMIALAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSGH 225 (406)
T ss_pred CHHHHHHhc------CCCcEEEEEecchhcccccCCHHHHHHHHHHcCC-EEEEEcccccCccccCchhcCCCEEEeehh
Confidence 89999988 5789999999999999999999999999999999 799999999999999998889999999999
Q ss_pred ccCcCCCCcEEEEEecCccccCCCCCceeccC-------CCC----cccccccccccCccccccHHHHHHHHHHhhcCHH
Q 012991 253 KWFFCPPSVAFLYCRKSILSSDMHHPVVSHEF-------GNG----LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID 321 (452)
Q Consensus 253 K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~ 321 (452)
| ++||.|+|++++++++++. .++...... ... .....+..||+++..++++.++++++.+. |.+
T Consensus 226 K-~~gp~G~G~l~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~--g~~ 300 (406)
T PRK09295 226 K-LYGPTGIGILYVKEALLQE--MPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSAL--GLN 300 (406)
T ss_pred h-ccCCCCcEEEEEchHhHhh--CCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHh--CHH
Confidence 9 6899999999999988765 343321100 000 00124567999999999999999999976 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
.+.++.+++++++++.|.+++++++..+.. +.+++.|.++ +.++.++.+.|.+ +||.++.+..+..
T Consensus 301 ~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~-~~~iv~~~~~-------~~~~~~~~~~L~~-~gI~v~~g~~c~~----- 366 (406)
T PRK09295 301 NIAEYEQNLMHYALSQLESVPDLTLYGPQN-RLGVIAFNLG-------KHHAYDVGSFLDN-YGIAVRTGHHCAM----- 366 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-CceEEEEEEC-------CcCHHHHHHHHHh-CCeEEeccccchH-----
Confidence 999999999999999999888888877643 4678888876 3456678888865 6999976654421
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
..... ...++++|+|++.|||.+||++++++|+++..
T Consensus 367 --~~~~~-~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 367 --PLMAY-YNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred --HHHHH-HCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 11000 12246899999999999999999999998753
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=364.02 Aligned_cols=382 Identities=18% Similarity=0.225 Sum_probs=309.4
Q ss_pred CCCHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCCC
Q 012991 23 CISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLINADDVG 99 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~ 99 (452)
+++++.+|++||....+.+|||+++.++.|+.|.+++.+++.....+++. .......+.++++|+.+++++|+++++
T Consensus 3 ~~~~~~~r~~fp~l~~~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~ 82 (401)
T PRK10874 3 VFNPAQFRAQFPALQDAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAK 82 (401)
T ss_pred CCCHHHHHHhCCCcCCceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 35788999999977677999999999999999999999998776555433 123556778999999999999994478
Q ss_pred cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHH
Q 012991 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFK 178 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~ 178 (452)
+|++|+|+|+++++++.++.+. .+++||+|++++++|+++...|..+++..|++++.+++ +.++.+ +++++
T Consensus 83 ~i~~~~~~t~~i~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~----~~~~~~d~~~l~ 154 (401)
T PRK10874 83 NIVWTRGTTESINLVAQSYARP----RLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPL----GADRLPDVDLLP 154 (401)
T ss_pred EEEEECCHHHHHHHHHHHhhhc----cCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEec----CCCCcCCHHHHH
Confidence 9999999999999999987321 24789999999999999988898878889999999965 333444 89999
Q ss_pred HHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCC
Q 012991 179 KGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 179 ~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
+.+ .++|++|++++++|+||.+.|+++|.++|+++|+ ++++|++|+.|..++++..+++|++++|+|| ++||
T Consensus 155 ~~i------~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~-~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp 226 (401)
T PRK10874 155 ELI------TPRTRILALGQMSNVTGGCPDLARAITLAHQAGM-VVMVDGAQGAVHFPADVQALDIDFYAFSGHK-LYGP 226 (401)
T ss_pred Hhc------CcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCC-EEEEECCcccccccCCchhcCCCEEEEeccc-ccCC
Confidence 998 5789999999999999999999999999999999 8999999999999988888899999999999 6899
Q ss_pred CCcEEEEEecCccccCCCCCceecc-------CC---CCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHE-------FG---NGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
.|+|+++++++.++. ..+..... +. .......+..|++++..++++.++++++.+. |.+.+.++..
T Consensus 227 ~G~G~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~--g~~~~~~~~~ 302 (401)
T PRK10874 227 TGIGVLYGKSELLEA--MSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADI--DINQAESWSR 302 (401)
T ss_pred CccEEEEEchHHHhc--CCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHh--CHHHHHHHHH
Confidence 999999999988875 33332100 00 0001123457899999999999999998876 8999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++++++.+.|.+++++++..++. .++++|.++ +.+..++.+.|.+ .||.++.+..+.. .+.+.
T Consensus 303 ~l~~~l~~~l~~~~g~~~~~~~~--~~i~~~~~~-------~~~~~~~~~~L~~-~gI~v~~g~~~~~-------~~~~~ 365 (401)
T PRK10874 303 SLATLAEDALAKLPGFRSFRCQD--SSLLAFDFA-------GVHHSDLVTLLAE-YGIALRAGQHCAQ-------PLLAA 365 (401)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCC--CcEEEEEEC-------CcCHHHHHHHHHH-CCcEEeccccchH-------HHHHH
Confidence 99999999999888887765544 568888775 4456788888866 5999986654421 00000
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
....+++|+|++.|||++||++++++|+++++.
T Consensus 366 -~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 366 -LGVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred -hCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 012479999999999999999999999998764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=344.80 Aligned_cols=368 Identities=18% Similarity=0.279 Sum_probs=308.0
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
++|||++.+.+..+.|+++|..++....+||++. ++....+.++++|+.+|+++|++ +++|+||+||||++++++.+
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~-~~eIiFTSG~TEsnNlaI~g 80 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGAD-PEEIIFTSGATESNNLAIKG 80 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEecCCcHHHHHHHHh
Confidence 6899999999999999999999999988999885 45677889999999999999997 79999999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
....+.+ .+.+.+|+++..+|+++...++++ +..|++|.++ +++.++.+ +++|+++| .++|.+|.+
T Consensus 81 ~~~a~~~--~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl----~V~~~G~v~~e~L~~al------~~~T~LVSi 147 (386)
T COG1104 81 AALAYRN--AQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYL----PVDSNGLVDLEQLEEAL------RPDTILVSI 147 (386)
T ss_pred hHHhhhc--ccCCCeEEEcccccHHHHHHHHHH-HhcCCeEEEe----CCCCCCeEcHHHHHHhc------CCCceEEEE
Confidence 6444321 146789999999999999999998 8889999999 66778888 99999999 588999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
.+.||.+|++.|+++|+++|+++++ ++|+|++|++|.+++|+..+++|++++|.|| ++||.|+|++|+++...-.
T Consensus 148 m~aNnE~G~IQpI~ei~~i~k~~~i-~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK-~~GpkGiGaLyv~~~~~~~--- 222 (386)
T COG1104 148 MHANNETGTIQPIAEIGEICKERGI-LFHVDAVQAVGKIPIDLEELGVDLLSFSAHK-FGGPKGIGALYVRPGVRLE--- 222 (386)
T ss_pred EecccCeeecccHHHHHHHHHHcCC-eEEEehhhhcCceeccccccCcceEEeehhh-ccCCCceEEEEECCCCccC---
Confidence 9999999999999999999999999 8999999999999999999999999999999 7999999999997766653
Q ss_pred CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH-cCCCcCCCc-cccc
Q 012991 277 HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA-WGTSLGSPP-EICA 354 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~-~~~~ 354 (452)
|.. .|++. ......||.+.+.+.++..|++...+ .++...+++..++++|.+.|.+. +.+.+.+.+ ....
T Consensus 223 -p~i---~GGgQ-E~g~RsGTenv~~Ivg~~~A~~~a~~---~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP 294 (386)
T COG1104 223 -PLI---HGGGQ-ERGLRSGTENVPGIVGFGKAAEIAVE---ELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLP 294 (386)
T ss_pred -cee---ccCcC-CCCCCCCCccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCC
Confidence 332 22211 11223499999999999999998886 57888889999999999999876 677776664 4557
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCC---CCCCC-CCccceEEecccccCCHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG---ARDKD-GIITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~---~~~~~-~~~~~~iRis~~~~~t~~di~ 430 (452)
+++.|.+| +...+.+.-.|.. .||++..++.|..... .++. .+... ....+.||+|++.+||++||+
T Consensus 295 ~~~~~~f~-------gv~gE~ll~~L~~-~gI~vStGSACsS~~~-~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~ 365 (386)
T COG1104 295 NILNFSFP-------GVEGESLLLALDL-AGIAVSTGSACSSGSL-EPSHVLRAMGISEELAHGSIRFSLGRFTTEEEID 365 (386)
T ss_pred CeEEEEeC-------CCcHHHHHHhccc-cCeEEeccccccCCCC-CccHHHHHcCCChHHhCccEEEEcCCCCCHHHHH
Confidence 88889887 6788889999965 5999988777643211 1111 11111 234678999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 012991 431 KFRDAVILLVEEG 443 (452)
Q Consensus 431 ~l~~~l~~~~~~~ 443 (452)
+++++++++++.-
T Consensus 366 ~~~~~l~~~i~~l 378 (386)
T COG1104 366 AAAEALKEIIKRL 378 (386)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999763
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=363.82 Aligned_cols=380 Identities=18% Similarity=0.205 Sum_probs=305.9
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh---hhhhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF---YFNSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
+++.+|++||.+..+.+|||+++.++.|+.|.+++.+++.....+++.. ......+.++++|+.+++++|++++++|
T Consensus 2 ~~~~~r~~fp~l~~~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i 81 (398)
T TIGR03392 2 NPAQFRQQFPALQDGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENI 81 (398)
T ss_pred ChhHHHHhCCccCCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence 5678999999776779999999999999999999999887655555321 2345567889999999999999546899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++|+|+|+++++++.++... .+++||+|++++++|+++...|..+++..|++++.++. +.++.+ ++.++++
T Consensus 82 ~~t~g~t~~l~~~~~~~~~~----~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~----~~~~~~~~~~l~~~ 153 (398)
T TIGR03392 82 VWTRGTTESINLVAQSYARP----RLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPI----GADLLPDIRQLPEL 153 (398)
T ss_pred EEeCChHHHHHHHHHHhhhc----cCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEec----CCCCCcCHHHHHHH
Confidence 99999999999999887311 14789999999999999888888778889999999965 333344 8999999
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+ ++++++|++++++|+||.+.|+++|.++|+++|+ ++++|++|+.|..++++..+++|++++|+|| ++||.|
T Consensus 154 i------~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~-~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~gp~G 225 (398)
T TIGR03392 154 L------TPRTRILALGQMSNVTGGCPDLARAITLAHQYGA-VVVVDGAQGVVHGPPDVQALDIDFYAFSGHK-LYGPTG 225 (398)
T ss_pred h------ccCceEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEhhhhcCCCCCChhhcCCCEEEEeccc-ccCCCc
Confidence 8 5789999999999999999999999999999999 8999999999999888888889999999999 689999
Q ss_pred cEEEEEecCccccCCCCCceeccC----------CCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEF----------GNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
+|+++++++.++. ..+...... ........+..||+++..++++.++++++.+. |.+++.++..++
T Consensus 226 ~G~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~--g~~~i~~~~~~l 301 (398)
T TIGR03392 226 IGVLYGKTELLEA--MPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDI--DIAAAEAWSVSL 301 (398)
T ss_pred eEEEEEcHHHHhh--CCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHHH
Confidence 9999999888765 233321100 00001124557899999999999999999876 999999999999
Q ss_pred HHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
++++.+.|.+++++.+..++. .++++|.++ +.++.++.+.|.+ +||.++.+..+.. ...+. .
T Consensus 302 ~~~l~~~l~~l~g~~~~~~~~--~~i~~~~~~-------~~~~~~l~~~L~~-~gI~v~~g~~~~~-------~~~~~-~ 363 (398)
T TIGR03392 302 ADLAEERLAQLPGFRSFRCPG--SSLLAFDFA-------GVHHSDLAALLAE-SGIALRAGQHCAQ-------PLMAA-L 363 (398)
T ss_pred HHHHHHHHhcCCCeEEeCCCC--CcEEEEEeC-------CcCHHHHHHHHHh-CCEEEecCccchH-------HHHHH-h
Confidence 999999999888887665443 568888775 4456789999876 5999986654421 00000 0
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+|++.|||.+||++++++|+++++.
T Consensus 364 g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 364 GVSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred CCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 12479999999999999999999999998764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=360.87 Aligned_cols=381 Identities=22% Similarity=0.292 Sum_probs=308.1
Q ss_pred HHHHhhhccCC-----CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCC
Q 012991 27 AEIRDEFSHHQ-----HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLINADDV 98 (452)
Q Consensus 27 ~~ir~~~~~~~-----~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~ 98 (452)
..+|++||... .+.+|||+++.++.|+.|.+++.+++..+..++.. .......+.++++|+.+++++|++++
T Consensus 15 ~~~r~~fp~~~~~~~~~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~ 94 (424)
T PLN02855 15 AETRPDFPILDQTVNGSKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTS 94 (424)
T ss_pred HHHHHhCchhccccCCCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 55799999754 36899999999999999999999988776555433 22344556789999999999999645
Q ss_pred CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHH
Q 012991 99 GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l 177 (452)
++|++|+|+|++++.++.++... .+++|++|+++.++|+++...|..+++..|++++.++++ .++.+ ++++
T Consensus 95 ~~v~~t~g~t~al~~i~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~----~~~~~~~~~l 166 (424)
T PLN02855 95 REIVFTRNATEAINLVAYTWGLA----NLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT----PDEVLDVEQL 166 (424)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhh----cCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC----CCCCcCHHHH
Confidence 79999999999999998865211 257899999999999999999988888899999999652 22334 8999
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcC
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g 257 (452)
++.+ .+++++|++++++|+||.+.|+++|.++|+++|+ ++++|++|+.|..++++..+++|++++|+|| ++|
T Consensus 167 ~~~i------~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~-~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~g 238 (424)
T PLN02855 167 KELL------SEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGA-KVLVDACQSVPHMPVDVQTLGADFLVASSHK-MCG 238 (424)
T ss_pred HHHh------ccCceEEEEeCccccccccCCHHHHHHHHHHcCC-EEEEEhhhhcCCcCCCchhcCCCEEEeeccc-ccC
Confidence 9999 5689999999999999999999999999999999 8999999999999999888899999999999 689
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCC------C----CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFG------N----GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
|.|+|++++++++++. ..+....+.. . ......+..||+++..++++.++++++.+. |.+++.++.
T Consensus 239 p~G~G~l~~~~~~~~~--~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~--g~~~i~~~~ 314 (424)
T PLN02855 239 PTGIGFLWGKSDLLES--MPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEI--GMDRIHEYE 314 (424)
T ss_pred CCccEEEEEchhhhhc--CCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHh--CHHHHHHHH
Confidence 9999999999988876 3444321110 0 001234567899999999999999999876 999999999
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCcc----cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAWGTSLGSPPE----ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
.++++++++.|.+++++++..+.. .+.+++.|.++ +.+..++.+.|.+++||.++.++.+..
T Consensus 315 ~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~-------~~~~~~v~~~L~~~~gI~v~~g~~c~~------- 380 (424)
T PLN02855 315 VELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVE-------GIHPTDLSTFLDQQHGVAIRSGHHCAQ------- 380 (424)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEEC-------CcCHHHHHHHhcccCCEEEechhhhhH-------
Confidence 999999999999888888776532 34678889886 456778999997656999987654421
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+. ...++++|+|++.|||++||++++++|++++..
T Consensus 381 ~~~~~-~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 381 PLHRY-LGVNASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred HHHHH-hCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 00000 012468999999999999999999999998865
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=345.01 Aligned_cols=379 Identities=18% Similarity=0.271 Sum_probs=300.0
Q ss_pred HHHhhhccCC-----CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCCC
Q 012991 28 EIRDEFSHHQ-----HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLINADDVG 99 (452)
Q Consensus 28 ~ir~~~~~~~-----~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~ 99 (452)
++|++||... .+++|||+++.++.|+.|.+++.+++.....++.. .......+.++++|+.+++++|++.++
T Consensus 2 ~~~~~f~~~~~~~~~~~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~ 81 (403)
T TIGR01979 2 NIRADFPILKRKINGKPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDE 81 (403)
T ss_pred chhhhCchhcCCCCCCceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 5788999753 36899999999999999999999888765555543 223445678899999999999996457
Q ss_pred cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHH
Q 012991 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFK 178 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~ 178 (452)
++++|+|+|+++.+++.++... .+++|++|++++++|+++...|..+++..|++++.+++ +.++.+ +++++
T Consensus 82 ~v~~~~g~t~~l~~~~~~~~~~----~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~----~~~~~~~~~~l~ 153 (403)
T TIGR01979 82 EIVFTRGTTESINLVAYSWGDS----NLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPL----DDDGTLDLDDLE 153 (403)
T ss_pred eEEEeCCHHHHHHHHHHHhhhh----cCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEec----CCCCCCCHHHHH
Confidence 9999999999999998876321 24789999999999999888888878888999999954 334445 89999
Q ss_pred HHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCC
Q 012991 179 KGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 179 ~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
+.+ .+++++|++++++|+||.+.|+++|.++|+++|+ ++++|++|+.|..++++..+++|++++|+||+ +||
T Consensus 154 ~~i------~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~-~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp 225 (403)
T TIGR01979 154 KLL------TEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGA-KVLVDGAQAVPHMPVDVQALDCDFYVFSGHKM-YGP 225 (403)
T ss_pred HHh------ccCCeEEEEEcccccccccCCHHHHHHHHHHcCC-EEEEEchhhcCccccCccccCCCEEEEecccc-cCC
Confidence 998 5789999999999999999999999999999999 79999999999999988888999999999995 789
Q ss_pred CCcEEEEEecCccccCCCCCceeccC--------C--CCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEF--------G--NGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
.|+|++++++++++. ..++...+. . .......+..|+++...++++.++++++.+. |.+.++++..
T Consensus 226 ~G~g~l~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~--g~~~~~~~~~ 301 (403)
T TIGR01979 226 TGIGVLYGKEELLEQ--MPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAI--GLENIEAHEH 301 (403)
T ss_pred CCceEEEEchHHHhc--CCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHh--CHHHHHHHHH
Confidence 999999999887765 233321100 0 0000122346889999999999999998876 8999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGAR 406 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~ 406 (452)
++++++++.|.+++++++..+.. .+++++.|.++ +.+..++.+.|.+ .||.++.+..+.. +..
T Consensus 302 ~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~L~~-~gI~v~~g~~~~~-------~~~ 366 (403)
T TIGR01979 302 ELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVE-------GVHPHDVGTILDE-EGIAVRSGHHCAQ-------PLM 366 (403)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeC-------CcCHHHHHHHHhh-CCEEEcchhhhhH-------HHH
Confidence 99999999999887888776542 34778888875 3456678888865 5999975443210 000
Q ss_pred CCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 407 DKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 407 ~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.. ...++++|+|++.+||++||++++++|+++++.
T Consensus 367 ~~-~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 367 RR-FGVPATCRASFYIYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred HH-hCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 00 112478999999999999999999999987753
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=324.18 Aligned_cols=407 Identities=25% Similarity=0.332 Sum_probs=296.9
Q ss_pred cCCCccccccCCCCCCCCC-----HHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-hhhhhhH
Q 012991 7 NGELTHHVSKKPKLTRCIS-----EAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-YFNSLRK 80 (452)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-----~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~ 80 (452)
||+---+.++++.|.+... -+.+-.+ +.+.+.+|||++.+++.+..|++++..++...+++|++. +.+....
T Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~ 85 (428)
T KOG1549|consen 8 NAAAASSAHRSPKPPALSPSGRLRKSFIISE--HHGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAED 85 (428)
T ss_pred chhhccccccccCccccCCCccccchhhhhc--cCCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhH
Confidence 3333334555555543322 2333333 466789999999999999999999999999999999998 6666677
Q ss_pred HHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEE
Q 012991 81 GILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 81 ~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 160 (452)
.++++|+.+|+++|++ +.+|+||+|+|+++++++..++|.+.. +...+||+.+.+|+++...+..+ +.-|++++.
T Consensus 86 ~~E~aR~~VAklInAd-~~dIiFts~ATEs~Nlvl~~v~~~~~~---~~~k~iitl~~eH~~v~~s~~~l-~~~g~~Vt~ 160 (428)
T KOG1549|consen 86 AVEAAREQVAKLINAD-PSDIVFTSGATESNNLVLKGVARFFGD---KTKKHIITLQTEHPCVLDSCRAL-QEEGLEVTY 160 (428)
T ss_pred HHHHHHHHHHHHhCCC-CCcEEEeCCchHHHHHHHHHhhccccc---cccceEEEecccCcchhHHHHHH-HhcCeEEEE
Confidence 7999999999999997 566999999999999999999875531 22339999999999999999986 667899999
Q ss_pred EeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccc
Q 012991 161 VQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDV 239 (452)
Q Consensus 161 ~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~ 239 (452)
+|+ .+++.. .+.|++.| .++|++|.+.+.+|.+|++.|+++|.++|+++++ .+++|+||+.|.+++|+
T Consensus 161 lpv----~~~~~~d~~~~~~~i------~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v-~v~~DaAQavG~i~vDV 229 (428)
T KOG1549|consen 161 LPV----EDSGLVDISKLREAI------RSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGV-QVHVDAAQAVGKIPVDV 229 (428)
T ss_pred ecc----CccccccHHHHHHhc------CCCceEEEEEecccCccccccHHHHHHHhCcCCc-EEEeehhhhcCCccccH
Confidence 954 445555 99999999 6899999999999999999999999999999999 89999999999999999
Q ss_pred cccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC
Q 012991 240 KEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG 319 (452)
Q Consensus 240 ~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g 319 (452)
+.+++|++++|+||| +||+|+|++|+++..-.-.+.++ ++++.....++.||.+...+.++..|.++.....++
T Consensus 230 ~eln~D~~s~s~HK~-ygp~~iGaLYvr~~~~~~~~~p~-----~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~ 303 (428)
T KOG1549|consen 230 QELNADFLSISAHKI-YGPPGIGALYVRRKRPRLRVEPP-----LSGGGQERGLRSGTVATPLAVGLGSAAEFVNKEMAY 303 (428)
T ss_pred HHcCchheeeecccc-cCCCcceEEEEccCCCcccccCc-----ccCCccccccccCCcCchhhhhhHHHHHHHHhhcch
Confidence 999999999999996 88888999999972221111222 334444566788999999999999999998874333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HcCCCcCCCc-ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCC
Q 012991 320 IDGIMQRNHEQALKMARMLAN-AWGTSLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~ 397 (452)
.+.+. ..+...+...+.. .+.+.+.+++ ....+.+.|.++.. ....+...+. .+.++.+..+-..
T Consensus 304 ~~~~~---~~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~-------~g~~~~~~~~---~~~l~s~~a~~~~ 370 (428)
T KOG1549|consen 304 DEAII---KRLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYV-------EGESLLMDLK---DVALSSGSACTSA 370 (428)
T ss_pred hHHHH---HHHHHHHHHHHhhhCchhhccCCcccccccceeeecccc-------cCcchhhhhh---hhhhcccchhhcC
Confidence 44443 3455566665543 3344444433 33455666666511 1111111110 1111110000000
Q ss_pred CCCCCCCC---CCC-CCCccceEEecccccCCHHHHHHHHHHHHHHHhcccccccccc
Q 012991 398 DGQPQAGA---RDK-DGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQVCQMLLT 451 (452)
Q Consensus 398 ~~~~~~~~---~~~-~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~~~~~~~~ 451 (452)
. ....+. ... ......++|||++.|+|++|++++++.+++.+...+.|+.|..
T Consensus 371 ~-~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~s~l~~ 427 (428)
T KOG1549|consen 371 S-LEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREMSPLWE 427 (428)
T ss_pred C-CCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 0 000000 000 1345678999999999999999999999999999999988764
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=337.88 Aligned_cols=356 Identities=24% Similarity=0.339 Sum_probs=286.3
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
||||++++++.|+.|++++.+++.....++.+ .+...+.+.++++++.+++++|++.+++|+|++|+|++++.++.+
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~ 80 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASS 80 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhc
Confidence 79999999999999999999999888777722 334567888999999999999998337999999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+.+ .+++|++|++.+.+|+++..+|..++++.|.+++.++.+ ..+.+ ++++++++ ++++++|++
T Consensus 81 l~~-----~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~----~~~~~~~~~~~~~l------~~~~~lv~~ 145 (371)
T PF00266_consen 81 LLN-----PLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD----PGGSLDLEDLEEAL------NPDTRLVSI 145 (371)
T ss_dssp HHH-----HGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG----TTSSCSHHHHHHHH------HTTESEEEE
T ss_pred ccc-----ccccccccccccccccccccccccccccchhhhcccccc----ccchhhhhhhhhhh------ccccceEEe
Confidence 842 148899999999999999999999888999999999652 23333 89999999 589999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++.+|.+|.+.|+++|.++||++|+ ++++|++|++|..++|+..+++|++++|+|| ++||+|+|+++++++.+++ +.
T Consensus 146 ~~~~~~tG~~~pi~~I~~~~~~~~~-~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~-~~ 222 (371)
T PF00266_consen 146 SHVENSTGVRNPIEEIAKLAHEYGA-LLVVDAAQSAGCVPIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIER-LR 222 (371)
T ss_dssp ESBETTTTBBSSHHHHHHHHHHTTS-EEEEE-TTTTTTSS--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHHH-HH
T ss_pred ecccccccEEeeeceehhhhhccCC-ceeEechhccccccccccccccceeeecccc-cCCCCchhhheehhhhhhc-cc
Confidence 9999999999999999999999999 8999999999999999999999999999999 8999999999999988876 21
Q ss_pred CCceeccCCC---------CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 277 HPVVSHEFGN---------GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 277 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+....+.+.. ......++.||+++..++++..+++++.+. |.+++.++..++.+++.+.|.+++++.+.
T Consensus 223 p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~--g~~~i~~~~~~l~~~~~~~l~~~~~~~~~ 300 (371)
T PF00266_consen 223 PAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEI--GIERIRERIRELAEYLREALEELPGIEVL 300 (371)
T ss_dssp TSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTTEEES
T ss_pred cccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhcc--ccccchhhhhhHHHHHHhhhhcCCceeEe
Confidence 1111111000 001123456899999999999999999765 99999999999999999999999888876
Q ss_pred CC--cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 348 SP--PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 348 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
.+ ...+.+++.|.++ +.+...+.+.|.++ ||.+..+..+.. +.... ...++.+|+|++.|||
T Consensus 301 ~~~~~~~~~~i~~~~~~-------~~~~~~~~~~L~~~-~I~~~~G~~~~~-------~~~~~-~~~~~~iRvS~~~~nt 364 (371)
T PF00266_consen 301 GPDDEPRRPSIVSFNLP-------GSDADDVVKYLEER-GIAVSTGSACAG-------PSLDI-LGMGGVIRVSLHYYNT 364 (371)
T ss_dssp SSSCGGBGTTEEEEEET-------TSSHHHHHHHHHHH-TEEEEESTTTCH-------HHHHH-HHTTTEEEEE-GTTSS
T ss_pred eecccccccceEEEeec-------CCCHHHHHHHHhhc-CEEEeccCcccH-------HHHHH-hCCCCEEEEeccCCCC
Confidence 54 3456889999885 66788999999887 999987555420 00000 0123799999999999
Q ss_pred HHHHHHH
Q 012991 426 LEDYEKF 432 (452)
Q Consensus 426 ~~di~~l 432 (452)
.+||++|
T Consensus 365 ~~dv~~l 371 (371)
T PF00266_consen 365 EEDVDRL 371 (371)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=326.31 Aligned_cols=352 Identities=19% Similarity=0.250 Sum_probs=280.8
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+|||++++++.|+.|++++.+++....++|+. .+...+.+.++++++.+++++|++ +++++||+|+|+++++++.+
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~t~~~t~a~~~~l~~ 79 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD-PKEIIFTSGATESNNLAIKG 79 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHH
Confidence 59999999999999999999988765566654 123556778999999999999996 78999999999999998877
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+.+. ..++|++|++++.+|+++...|..+ ...|++++.+++ +.++.+ ++++++++ ++++++|++
T Consensus 80 ~~~~----~~~~g~~vl~~~~~h~s~~~~~~~~-~~~g~~v~~v~~----~~~~~~d~~~l~~~i------~~~t~lv~v 144 (364)
T PLN02651 80 VMHF----YKDKKKHVITTQTEHKCVLDSCRHL-QQEGFEVTYLPV----KSDGLVDLDELAAAI------RPDTALVSV 144 (364)
T ss_pred HHHh----ccCCCCEEEEcccccHHHHHHHHHH-HhcCCEEEEEcc----CCCCcCCHHHHHHhc------CCCcEEEEE
Confidence 6432 1367899999999999998888775 467999999954 333444 89999999 578999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++|+||.+.|+++|.++||++|+ ++++|++|+.|..++++..+++|++++|+||| +||.|+|+++++++.... +
T Consensus 145 ~~~~n~tG~~~~l~~I~~~~~~~g~-~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~-l- 220 (364)
T PLN02651 145 MAVNNEIGVIQPVEEIGELCREKKV-LFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRVR-L- 220 (364)
T ss_pred ECCCCCceecccHHHHHHHHHHcCC-EEEEEcchhhCCcccCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCCC-C-
Confidence 9999999999999999999999999 79999999999999999999999999999997 899999999999988775 3
Q ss_pred CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HcCCCcCCCc--c-c
Q 012991 277 HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN-AWGTSLGSPP--E-I 352 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~--~-~ 352 (452)
.|.. .|++. ...+..||+++..++++.++++++.+ +.+.+.++.+++.+++.+.|.+ ++++++..+. . .
T Consensus 221 ~p~~---~g~~~-~~~~~~GT~~~~~~~~l~~al~~~~~---~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~ 293 (364)
T PLN02651 221 EPLM---SGGGQ-ERGRRSGTENTPLVVGLGAACELAMK---EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKR 293 (364)
T ss_pred Cccc---cCCCc-cCCccCCCccHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccC
Confidence 3332 22221 12345799999999999999999986 4599999999999999999986 5688887752 2 2
Q ss_pred ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC----ccceEEecccccCCHHH
Q 012991 353 CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI----ITGYARISHQVYNTLED 428 (452)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~iRis~~~~~t~~d 428 (452)
..+++.|.++ +.++.++...|.+ |.++.+..|...-. ..+.+.++.+. ..+.+|+|++.|||++|
T Consensus 294 ~~~i~~~~~~-------~~~~~~~~~~L~~---i~v~~g~~c~~~~~-~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~d 362 (364)
T PLN02651 294 YPGTLNLSFA-------YVEGESLLMGLKE---VAVSSGSACTSASL-EPSYVLRALGVPEEMAHGSLRLGVGRFTTEEE 362 (364)
T ss_pred cCCEEEEEeC-------CCCHHHHHHHhCC---EEEEchhhcCCCCC-CcCHHHHHcCCChHHhCceEEEEcCCCCCHHH
Confidence 3568888886 5577889999842 88876665432100 01111112221 24799999999999999
Q ss_pred HH
Q 012991 429 YE 430 (452)
Q Consensus 429 i~ 430 (452)
||
T Consensus 363 id 364 (364)
T PLN02651 363 VD 364 (364)
T ss_pred cC
Confidence 85
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=326.28 Aligned_cols=363 Identities=17% Similarity=0.221 Sum_probs=286.2
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHh
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI 118 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l 118 (452)
+|||+++.++.|++|++++.+++....++++.. +...+.+.++++|+.+++++|++ +++|+||+|+|+++++++.++
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~t~~~t~a~~~al~~~ 79 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE-PDEIIFTSGGTESDNTAIKSA 79 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHHHHHHHHH
Confidence 599999999999999999999887665666542 23455778899999999999996 789999999999999998876
Q ss_pred hcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEe
Q 012991 119 GRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 119 ~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
.. ...++++|+++..+|+++...+..+ ...|.+++.++. +.++.+ ++++++.+ .+++++|+++
T Consensus 80 ~~-----~~~~~~~vv~~~~~~~s~~~~~~~~-~~~G~~v~~v~~----~~~g~~~~~~l~~~i------~~~~~lv~i~ 143 (379)
T TIGR03402 80 LA-----AQPEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYLPV----DEEGRLDLEELRAAI------TDDTALVSVM 143 (379)
T ss_pred HH-----hcCCCCeEEEcccccHHHHHHHHHH-HHcCCEEEEEcc----CCCCcCCHHHHHHhc------CCCcEEEEEE
Confidence 31 1245689999999999998888775 557999999954 334445 89999998 5688999999
Q ss_pred ccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC
Q 012991 198 HITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~ 277 (452)
+++|+||.+.|+++|.++|+++|+ ++++|++|+.|..++++..+++|++++|+|| ++||.|+|+++++++... .
T Consensus 144 ~~~n~tG~~~~~~~I~~l~~~~g~-~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~~----~ 217 (379)
T TIGR03402 144 WANNETGTIFPIEEIGEIAKERGA-LFHTDAVQAVGKIPIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGTRF----R 217 (379)
T ss_pred cccCCeeecccHHHHHHHHHHcCC-EEEEECcccccccccCcccCCCCEEEEcHHH-cCCCCceEEEEECCCCCC----C
Confidence 999999999999999999999999 8999999999999999999999999999999 799999999999876532 2
Q ss_pred CceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HcCCCcCCCcccc-cc
Q 012991 278 PVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN-AWGTSLGSPPEIC-AA 355 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~-~~ 355 (452)
|.. .|+.. ......|++++..++++.+++++..+ ..+.+.++.+++++++++.|.+ ++++.+..++..+ ++
T Consensus 218 p~~---~g~~~-~~~~~~gt~~~~~~~~l~~al~~~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 290 (379)
T TIGR03402 218 PLL---RGGHQ-ERGRRAGTENVPGIVGLGKAAELATE---HLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPN 290 (379)
T ss_pred Ccc---cCCcc-CCCcCCCCccHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCC
Confidence 321 11111 12234689999999999999999876 5788889999999999999985 7787776654322 45
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC----CCccceEEecccccCCHHHHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD----GIITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~iRis~~~~~t~~di~~ 431 (452)
++.|.++ +.++.++.+.|.+ +||.++.++.|...... .+.+.+.. ...++.+|+|++.+||++||++
T Consensus 291 ~~~~~~~-------~~~~~~~~~~l~~-~gI~v~~g~~c~~~~~~-~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~ 361 (379)
T TIGR03402 291 TVNISFE-------YIEGEAILLLLDM-EGICASSGSACTSGSLE-PSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDY 361 (379)
T ss_pred EEEEEec-------CCCHHHHHHhhcc-CCEEEEchhhcCCCCCC-cCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHH
Confidence 6766664 3466789998865 59999877766432100 00000011 1125789999999999999999
Q ss_pred HHHHHHHHHhc
Q 012991 432 FRDAVILLVEE 442 (452)
Q Consensus 432 l~~~l~~~~~~ 442 (452)
++++|+++++.
T Consensus 362 ~~~~l~~~~~~ 372 (379)
T TIGR03402 362 VLEVLPPIIAR 372 (379)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=328.51 Aligned_cols=373 Identities=20% Similarity=0.219 Sum_probs=290.1
Q ss_pred HHHHHhhhccCCCC-eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhh--hhhhhHHHHHHHHHHHhHhCCCCCCcEE
Q 012991 26 EAEIRDEFSHHQHG-VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFY--FNSLRKGILESRAAVKDLINADDVGEIS 102 (452)
Q Consensus 26 ~~~ir~~~~~~~~~-~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~i~ 102 (452)
+..+|++||..+.. ++|||++++++.|+.+++++.+.+.....++...+ .....+..+++++.+++++|++ +++++
T Consensus 3 ~~~~r~~f~~~~~~~~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~-~~~v~ 81 (397)
T TIGR01976 3 VEAVRGQFPALADGDRVFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD-PPEVV 81 (397)
T ss_pred hhHHHhhCCcCCCCCeEEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC-CCeEE
Confidence 46789999986554 79999999999999999999998866544333222 2345677899999999999996 56799
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
+++|+|+++..++.++.. .+++||+|++++++|+++...|..+++..|++++.++++. +++.+ ++++++.+
T Consensus 82 ~~~~~t~~l~~~~~~~~~-----~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~l~~~i 153 (397)
T TIGR01976 82 FGANATSLTFLLSRAISR-----RWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDE---ATGELHPDDLASLL 153 (397)
T ss_pred EeCCHHHHHHHHHHHHHh-----cCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccc---cCCCcCHHHHHHhc
Confidence 999999999888876631 2478999999999999998888776788999999996521 12344 89999998
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSV 261 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~ 261 (452)
++++++|++++++|+||.+.|+++|.++|+++|+ ++++|++|+.|..++++..+++|++++|+||| +|++ +
T Consensus 154 ------~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~-~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~-~ 224 (397)
T TIGR01976 154 ------SPRTRLVAVTAASNTLGSIVDLAAITELVHAAGA-LVVVDAVHYAPHGLIDVQATGADFLTCSAYKF-FGPH-M 224 (397)
T ss_pred ------CCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCC-EEEEehhhhccccCCCHHHcCCCEEEEechhh-cCCc-e
Confidence 5689999999999999999999999999999999 89999999998888888888999999999998 5765 7
Q ss_pred EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC--------------HHHHHHHH
Q 012991 262 AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG--------------IDGIMQRN 327 (452)
Q Consensus 262 G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g--------------~~~~~~~~ 327 (452)
|+++++++++.. + .+....+. .......+..|++++..++++.++++++.+. | ++.+.++.
T Consensus 225 G~l~~~~~~~~~-l-~~~~~~~~-~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 299 (397)
T TIGR01976 225 GILWGRPELLMN-L-PPYKLTFS-YDTGPERFELGTPQYELLAGVVAAVDYLAGL--GESANGSRRERLVASFQAIDAYE 299 (397)
T ss_pred EEEEEcHHHHhh-C-CCccccCc-cCCCcchhcCCCCCHHHHHHHHHHHHHHHHh--CcccccchhhhhhHHHHHHHHHH
Confidence 999999887765 2 23221111 1111234567899999999999999998865 4 67788888
Q ss_pred HHHHHHHHHHHHHHcCCCcCCC--cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAWGTSLGSP--PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGA 405 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~ 405 (452)
.++.+++++.|.+++++++..+ ....++++.+.++ +.+..++.+.|.+ +||.++.+..+.. .+
T Consensus 300 ~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~L~~-~gI~v~~~~~~~~-------~~ 364 (397)
T TIGR01976 300 NRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVH-------GLPPQRVVRRLAD-QGIDAWAGHFYAV-------RL 364 (397)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeC-------CcCHHHHHHHHHH-CCeEEEeCccchH-------HH
Confidence 9999999999988766777655 2234778888764 3466789999976 4999986543310 00
Q ss_pred CCCC--CCccceEEecccccCCHHHHHHHHHHH
Q 012991 406 RDKD--GIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 406 ~~~~--~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
.... ....+++|+|++.++|++||++++++|
T Consensus 365 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 365 LRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 0000 123468999999999999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=354.47 Aligned_cols=397 Identities=18% Similarity=0.183 Sum_probs=295.9
Q ss_pred CCCHHHHH-hhhccCCCCeEEeccCCCCCCc-HHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCC
Q 012991 23 CISEAEIR-DEFSHHQHGVARINNGSFGSCP-KSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDV 98 (452)
Q Consensus 23 ~~~~~~ir-~~~~~~~~~~~~l~~~~~~~~p-~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~ 98 (452)
.++++.+| ++||.+ ..++|||+++.++.+ ..|.+++..+.....+++++. .+....+.++++|+.+++++|++..
T Consensus 18 ~~~~~~~R~~~fp~l-~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~ 96 (805)
T PLN02724 18 PKPIDELRATEFARL-KGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPS 96 (805)
T ss_pred hhhHHHHHHHHhhhc-CCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCcc
Confidence 45689999 589987 458999999998755 566666777766666677653 2345577899999999999999633
Q ss_pred C-cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC----ChHHH
Q 012991 99 G-EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA----SEEEI 173 (452)
Q Consensus 99 ~-~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~----~~~~~ 173 (452)
+ .|+||+|+|+|+++++.++. +++|++|+++..+|.++. .|..++++.|++++.++++.+.. ..+.+
T Consensus 97 ~~~VvFtsnaT~alnlva~~l~-------~~~gd~Iv~t~~eH~svl-~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~ 168 (805)
T PLN02724 97 DYACVFTSGATAALKLVGETFP-------WSSESHFCYTLENHNSVL-GIREYALEKGAAAIAVDIEEAANQPTNSQGSV 168 (805)
T ss_pred ceEEEEeCChHHHHHHHHHHCC-------CCCCCeEEEeeccccchH-HHHHHHHHcCCeEEeccchhcccccccccccc
Confidence 4 68999999999999998873 578999999999999987 55566788899999996531110 12222
Q ss_pred ---HHHHHHHHh----ccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc--------CCCEEEEecccccCCcccc
Q 012991 174 ---INEFKKGIE----KGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE--------GVDQVFVDAAHAMGSIKID 238 (452)
Q Consensus 174 ---~~~l~~~i~----~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~--------~~~~~ivD~a~~~g~~~~~ 238 (452)
.++|++.++ .....++++++|++++.+|.+|.+.|+++|..+++.. ++ ++++|++|++|+.++|
T Consensus 169 ~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~-~v~vDaaQ~~g~~piD 247 (805)
T PLN02724 169 VVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRW-MVLLDAAKGCGTSPPD 247 (805)
T ss_pred ccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcce-EEEeehhhhcCCCCCC
Confidence 245555431 1111135678999999999999999999875555432 36 7999999999999999
Q ss_pred ccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCc----------------ccccccccccCccc
Q 012991 239 VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGL----------------PIESAWIGTRDYSA 302 (452)
Q Consensus 239 ~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 302 (452)
+..+++|++++|+|||++||.|+|++|++++++.. +.+.+ +|++. ....++.||+++..
T Consensus 248 v~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~-l~p~~----~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~ 322 (805)
T PLN02724 248 LSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKL-LKKKY----FGGGTVAASIADIDFVKRRERVEQRFEDGTISFLS 322 (805)
T ss_pred hhhcCCCEEEEecceeccCCCCceEEEEehhhhhh-hcCCc----cCCCceEEEecccceeeccccHHHHhcCCCcchhH
Confidence 99999999999999987679999999999988765 32232 22211 12356789999999
Q ss_pred cccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc------CCCcCCCc------ccccceEEEEcCCccccCCh
Q 012991 303 QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW------GTSLGSPP------EICAAMVMVGLPSRLRVMGE 370 (452)
Q Consensus 303 ~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 370 (452)
++++.++++++.++ |.+.+.++..++.+++.+.|.+++ +++++++. ..+++++.|.+....+ ..
T Consensus 323 i~~l~aal~~l~~i--g~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~--~~ 398 (805)
T PLN02724 323 IAALRHGFKLLNRL--TISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADG--SW 398 (805)
T ss_pred HHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCC--CE
Confidence 99999999999987 999999999999999999999886 46777653 2468899998853211 12
Q ss_pred hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCC--C------------------CCC-CCccceEEecccccCCHHHH
Q 012991 371 DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGA--R------------------DKD-GIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 371 ~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~--~------------------~~~-~~~~~~iRis~~~~~t~~di 429 (452)
+...++...+ ..+||.++.+++|... .+..++ . +.. +...+++|+|+++|||.+||
T Consensus 399 v~~~~v~~l~-~~~gI~vR~G~~Ca~~--~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDv 475 (805)
T PLN02724 399 VGHREVEKLA-SLSGIQLRTGCFCNPG--ACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDC 475 (805)
T ss_pred eCHHHHHHHH-HhcCcEEeeccccCch--HHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHH
Confidence 3344455444 4579999998887532 111111 0 000 12348999999999999999
Q ss_pred HHHHHHHHHHHh
Q 012991 430 EKFRDAVILLVE 441 (452)
Q Consensus 430 ~~l~~~l~~~~~ 441 (452)
++++++|++..-
T Consensus 476 d~lv~~l~~~~~ 487 (805)
T PLN02724 476 QKFIDFIISSFV 487 (805)
T ss_pred HHHHHHHHHHhh
Confidence 999999999764
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=324.41 Aligned_cols=364 Identities=16% Similarity=0.209 Sum_probs=276.7
Q ss_pred CCHHHHHhhhccCC----CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-hh--hhhhHHHHHHHHHHHhHhCCC
Q 012991 24 ISEAEIRDEFSHHQ----HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-YF--NSLRKGILESRAAVKDLINAD 96 (452)
Q Consensus 24 ~~~~~ir~~~~~~~----~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~la~~~~~~ 96 (452)
..++.+|++||... +.++|||+++.++.|+.|.+++.+++..+...+... +. ..+....+..++ + +++|++
T Consensus 8 ~~~~~~r~~f~~~~~~~~~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~ 85 (406)
T TIGR01814 8 DPLRALRDEFHLPKIGDENAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAK 85 (406)
T ss_pred ChHHHHHHhcCCCcccCCCCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCC
Confidence 34678899999641 668999988898899999999999887664333211 11 122333344444 5 899996
Q ss_pred CCCcEEEecChhHHHHHHHHHhhcccccCCCCC---CCEEEEeCCcchhHHHHHHHHHHhcCcEE----EEEeCCCCCCC
Q 012991 97 DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR---NDTVLMLHCAFQAVKKSIQAYVTRAGGSV----VEVQLPFPLAS 169 (452)
Q Consensus 97 ~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~---g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v----~~~~~~~~~~~ 169 (452)
+++|+||+|+|++++.++.++ +++ +++|++++.+|+++..+|...+++.|.++ +.++ .+.
T Consensus 86 -~~~v~~~~~~t~~l~~~~~~~--------~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~----~~~ 152 (406)
T TIGR01814 86 -EDEVVVMNTLTINLHLLLASF--------YKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIE----PRE 152 (406)
T ss_pred -CCcEEEeCCchHHHHHHHHHh--------cCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEec----cCC
Confidence 889999999999999999876 233 34788889999999888876667778887 3442 233
Q ss_pred hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEE
Q 012991 170 EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYV 248 (452)
Q Consensus 170 ~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~ 248 (452)
++.+ ++++++.+++. +++|++|++++++|.+|.+.|+++|.++|+++|+ ++++|++|++|..++|+..+++|+++
T Consensus 153 ~g~~~~~~l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~-~~~vD~aq~~G~~~id~~~~gvD~~~ 228 (406)
T TIGR01814 153 EETLRLEDILDTIEKN---GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGA-LVGFDLAHAVGNVPLDLHDWGVDFAC 228 (406)
T ss_pred CCccCHHHHHHHHHhc---CCCeEEEEEeccccccceecCHHHHHHHHHHcCC-EEEEEcccccCCcccccccCCCCEEE
Confidence 3333 67777777532 4789999999999999999999999999999999 89999999999999999999999999
Q ss_pred EcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCC------------CcccccccccccCccccccHHHHHHHHHHh
Q 012991 249 SNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGN------------GLPIESAWIGTRDYSAQLVIPSAVTFVSRF 316 (452)
Q Consensus 249 ~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 316 (452)
+|+|||++||+| |+++++++.... + .|....+++. ......+..||+++..++++.++++++.+.
T Consensus 229 ~s~hK~l~g~pG-~~l~v~~~~~~~-~-~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~ 305 (406)
T TIGR01814 229 WCTYKYLNAGPG-AGAFVHEKHAHT-E-RPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQA 305 (406)
T ss_pred EcCccccCCCCC-eEEEEehhhhhh-c-CCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhc
Confidence 999999988888 777776554433 2 2221111111 001123456899999999999999999876
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHc----CCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee
Q 012991 317 EGGIDGIMQRNHEQALKMARMLANAW----GTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI 390 (452)
Q Consensus 317 ~~g~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~ 390 (452)
|.+.++++..++.+++++.|.++. ++++..+.. .+++++.|.++ .++.++.+.|.++ ||.+..
T Consensus 306 --g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~--------~~~~~~~~~L~~~-gi~v~~ 374 (406)
T TIGR01814 306 --GMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP--------VPGKAVFQALIKR-GVIGDK 374 (406)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec--------CCHHHHHHHHHHC-CEEEec
Confidence 999999999999999999998763 476666532 34678888774 2456888898764 998731
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHH
Q 012991 391 HYQAPKDDGQPQAGARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~ 440 (452)
..++.+|+|+ +.|||.+||++++++|++++
T Consensus 375 --------------------~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 375 --------------------REPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred --------------------cCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 2236899999 68999999999999999875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=321.38 Aligned_cols=363 Identities=20% Similarity=0.274 Sum_probs=283.8
Q ss_pred EEeccCCCC-CCcHHHHHHHHHHHHHHhcCCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 41 ARINNGSFG-SCPKSVLADQQKWQLKFLQQPDD-FYF--NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 41 ~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
+|||+++.. +.|+.+++++.+.+.....++.. .+. ....+..+++++.+++++|+++.++|++|+|+|+++..++.
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~ 80 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALK 80 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence 589988766 78888999999888764333322 111 23347789999999999999644589999999999999988
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++ +++|++|+++.++|+++..++..+++..|.+++.++. +.++.+ .+++++.+ .+++++|+
T Consensus 81 ~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~~~~~~d~~~l~~~~------~~~~~~v~ 142 (376)
T TIGR01977 81 GL--------LKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKC----DNEGLISPERIKRAI------KTNTKLIV 142 (376)
T ss_pred hc--------cCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEec----CCCCCcCHHHHHHhc------CCCCeEEE
Confidence 75 5889999999999999988888778888999999854 333444 88999988 56899999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
+++++|+||.+.|+++|.++|+++|+ ++|+|++|++|..++++..+++|++++|+|||++||.|+|+++++++.....+
T Consensus 143 ~~~~~n~tG~~~~~~~i~~l~~~~~~-~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~ 221 (376)
T TIGR01977 143 VSHASNVTGTILPIEEIGELAQENGI-FFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPL 221 (376)
T ss_pred EECCCCCccccCCHHHHHHHHHHcCC-EEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCcCcCce
Confidence 99999999999999999999999999 79999999999999999888999999999999999999999998877532101
Q ss_pred CCCce---eccCCC-CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-
Q 012991 276 HHPVV---SHEFGN-GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP- 350 (452)
Q Consensus 276 ~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 350 (452)
..... ...+.. ......+..++++...++++.++++++.+. |.+.++++.+++++++.+.|.+.+++++..+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 299 (376)
T TIGR01977 222 KSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKI--GIANIAKKECMLTEKLLNGLREINKVKIYGPAD 299 (376)
T ss_pred ecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC
Confidence 11000 000000 001123456889998999999999999876 99999999999999999999988888877652
Q ss_pred -ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC-CCccceEEecccccCCHHH
Q 012991 351 -EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD-GIITGYARISHQVYNTLED 428 (452)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~iRis~~~~~t~~d 428 (452)
....++++|.++ +.+..++.+.|.+++||.++.+..+... ..... ....+.+|++++.++|.+|
T Consensus 300 ~~~~~~~v~~~~~-------~~~~~~~~~~L~~~~gi~v~~g~~~~~~-------~~~~~g~~~~~~iRis~~~~~t~~d 365 (376)
T TIGR01977 300 PANRVGVVSFTVE-------GIDSEEVADILDEKFDIATRTGLHCAPL-------AHKTIGTFATGTIRLSLGYFNTEEE 365 (376)
T ss_pred ccccCCeEEEEEC-------CCCHHHHHHHHhccCCEEEEcccccchH-------HHHHhCCCCCCeEEEecCCCCCHHH
Confidence 234678888885 4567889999977669999765543210 00000 1245799999999999999
Q ss_pred HHHHHHHHHH
Q 012991 429 YEKFRDAVIL 438 (452)
Q Consensus 429 i~~l~~~l~~ 438 (452)
|++++++|++
T Consensus 366 v~~~~~~l~~ 375 (376)
T TIGR01977 366 IEKLLEALSE 375 (376)
T ss_pred HHHHHHHHhh
Confidence 9999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=318.35 Aligned_cols=366 Identities=17% Similarity=0.219 Sum_probs=283.5
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHh
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI 118 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l 118 (452)
+|||++++++.|+.|++++.+++.....+|+.. ++....+.+++.++.+++.+++.++++|++|+|+|+++++++.++
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~ 80 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGV 80 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHH
Confidence 599999999999999999999998766777653 233445567777788887888733689999999999999999876
Q ss_pred hcccccCCCCC-CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 119 GRGFTEGRFHR-NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 119 ~~~~~~~~~~~-g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
.+.. ..++ +++|+++..+|+++...+.. ++..|.+++.+++ ++++.+ ++++++.+ ++++++|++
T Consensus 81 ~~~~---~~~~~~~~vi~~~~e~ps~~~~~~~-~~~~G~~v~~v~~----~~~g~~d~~~l~~~i------~~~t~lv~~ 146 (382)
T TIGR03403 81 YFDE---ILKGGKNHIITTEVEHPAVRATCAF-LESLGVEVTYLPI----NEQGTITAEQVREAI------TEKTALVSV 146 (382)
T ss_pred HHhh---cccCCCCEEEEcCCccHHHHHHHHH-HHHCCCEEEEEec----CCCCCCCHHHHHHhc------ccCCeEEEE
Confidence 3211 1144 56899999999999888775 4778999999954 334454 88999988 567899999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++|+||.+.|+++|.++|+++|+ ++++|++++.|..++++..+++|++++|+||| +||+|+|+++++++...
T Consensus 147 ~~~~n~tG~~~~~~~I~~la~~~g~-~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~vr~~~~~---- 220 (382)
T TIGR03403 147 MWANNETGMIFPIKEIGEICKERGV-LFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKF-HGPKGVGGLYIRKGVEL---- 220 (382)
T ss_pred EcccCCCccccCHHHHHHHHHHcCC-EEEEechhhcCCCccCccccCCCEEEEcchhh-CCCCceEEEEECCCCCC----
Confidence 9999999999999999999999999 79999999999999998888999999999996 89999999999887532
Q ss_pred CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc-ccc
Q 012991 277 HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI-CAA 355 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~ 355 (452)
.+.+ .|+.. ......|+++...++++..++++..+ +.+...++.+++++++.+.|.+++++.+..+... ..+
T Consensus 221 ~p~~---~g~~~-~~~~~~gt~~~~~~~al~~al~~~~~---~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~ 293 (382)
T TIGR03403 221 TPLF---HGGEH-MGGRRSGTLNVPYIVAMGEAMRLANE---YLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPN 293 (382)
T ss_pred CCcc---cCCCC-CCCcccCCcChHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCC
Confidence 2321 11111 12233589999999999999988775 5788889999999999999998888887765432 245
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC----ccceEEecccccCCHHHHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI----ITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~iRis~~~~~t~~di~~ 431 (452)
++.|.++ +.+...+...|.+ .||.++.++.|...+.. ......+.+. ..+.+|+|++.+||.+||++
T Consensus 294 ~~~~~~~-------~~~~~~~~~~L~~-~gI~v~~g~~c~~~~~~-~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~ 364 (382)
T TIGR03403 294 TILISIK-------GVEGEAMLWDLNK-AGIAASTGSACASEDLE-ANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDY 364 (382)
T ss_pred EEEEEeC-------CCCHHHHHHhhcc-CCEEEEchhccCCCCCC-cCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHH
Confidence 7778774 4567788888866 59999877665322100 0011111111 24689999999999999999
Q ss_pred HHHHHHHHHhc
Q 012991 432 FRDAVILLVEE 442 (452)
Q Consensus 432 l~~~l~~~~~~ 442 (452)
++++|+++++.
T Consensus 365 ~~~~l~~~~~~ 375 (382)
T TIGR03403 365 TIEVFKKAVQR 375 (382)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=315.49 Aligned_cols=359 Identities=19% Similarity=0.284 Sum_probs=282.7
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+|||+++.++.|+.+++++.+++.....+|++ .+.....+...++++.+++++++++++++++|+|+|+++++++.+
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~ 80 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYG 80 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHH
Confidence 59999999999999999999888776666543 234566778899999999999986467999999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+.+. ..+|++|++++++|++....+..+++..|.+++.++. +.++.+ ++++++.+ .+++++|++
T Consensus 81 l~~~-----~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~~~~~~d~~~l~~~l------~~~~~~v~~ 145 (373)
T cd06453 81 LGRA-----NKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPV----DDDGQLDLEALEKLL------TERTKLVAV 145 (373)
T ss_pred hhhc-----CCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeec----CCCCCcCHHHHHHHh------cCCceEEEE
Confidence 8410 0288999999999999888877777788999999954 334445 89999999 568999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++|+||.+.|+++|.++|+++|+ ++++|++++.|..++++..+++|++++|+|||+++ .|+|++++++++++. +
T Consensus 146 ~~~~~~tG~~~~~~~i~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~~-~- 221 (373)
T cd06453 146 THVSNVLGTINPVKEIGEIAHEAGV-PVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLEE-M- 221 (373)
T ss_pred eCcccccCCcCCHHHHHHHHHHcCC-EEEEEhhhhcCceeeeccccCCCEEEeccccccCC-CCcEEEEEchHHhhc-C-
Confidence 9999999999999999999999999 79999999999988888888999999999998555 889999999888775 2
Q ss_pred CCceeccCC-------C---CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 277 HPVVSHEFG-------N---GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 277 ~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
.+....... . ......+..+++++..++++.++++++.+. |.+.++++.+++++++.+.|.+++++++
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~--g~~~~~~~~~~~~~~l~~~l~~~~~~~~ 299 (373)
T cd06453 222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKI--GMEAIAAHEHELTAYALERLSEIPGVRV 299 (373)
T ss_pred CCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 222110000 0 001112345788888889999999998865 8999999999999999999998878877
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
+.++....++++|.++ +.+..++.+.|.+ +||.+..++.+.. ..... ...++++|+|++.++|.
T Consensus 300 ~~~~~~~~~~~~~~~~-------~~~~~~i~~~l~~-~gi~i~~g~~~~~-------~~~~~-~~~~~~iRis~~~~~t~ 363 (373)
T cd06453 300 YGDAEDRAGVVSFNLE-------GIHPHDVATILDQ-YGIAVRAGHHCAQ-------PLMRR-LGVPGTVRASFGLYNTE 363 (373)
T ss_pred eCCccccCCeEEEEEC-------CcCHHHHHHHHHH-CCEEeccCccchh-------HHHHH-hCCCCeEEEEecCCCCH
Confidence 6544334678888875 3467789999866 5999875543210 00000 11257999999999999
Q ss_pred HHHHHHHHHH
Q 012991 427 EDYEKFRDAV 436 (452)
Q Consensus 427 ~di~~l~~~l 436 (452)
+|+|+++++|
T Consensus 364 ~di~~~~~~l 373 (373)
T cd06453 364 EEIDALVEAL 373 (373)
T ss_pred HHHHHHHhhC
Confidence 9999999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=313.67 Aligned_cols=366 Identities=17% Similarity=0.169 Sum_probs=280.2
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh---hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF---YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
.+|||++++++.|+.|++++..++.....++... ......+.++++++.+++++|++ +++|+||+|+|+++++++.
T Consensus 4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~ 82 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGAD-SREIVFTSGATESNNLAIK 82 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHH
Confidence 5899999999999999999988876555666532 22334567899999999999996 7899999999999999988
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++... ..++|++|+++.++|+++...+..+ +..|++++.+++ +.++.+ ++++++.+ .+++++|+
T Consensus 83 ~l~~~----~~~~g~~Vi~~~~~h~s~~~~~~~~-~~~g~~v~~v~~----~~~~~~d~~~l~~~l------~~~~~lv~ 147 (402)
T TIGR02006 83 GIAHF----YKSKGNHIITSKTEHKAVLDTCRYL-EREGFEVTYLPP----KSNGLIDLEELKAAI------RDDTILVS 147 (402)
T ss_pred HHHHh----hcCCCCEEEECCCccHHHHHHHHHH-HhcCCEEEEEcc----CCCCcCCHHHHHHhc------CCCCEEEE
Confidence 76321 1367899999999999998888764 567999999954 334445 88999988 56789999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
+++++|+||.+.|+++|.++|+++|+ ++++|++|+.|..++++..+++|++++|+||+ +||.|+|+++++++....
T Consensus 148 v~~~~n~tG~~~~~~~I~~l~~~~g~-~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~~~~~-- 223 (402)
T TIGR02006 148 IMHVNNEIGVIQDIAAIGEICRERKV-FFHVDAAQSVGKIPINVNELKVDLMSISGHKI-YGPKGIGALYVRRKPRVR-- 223 (402)
T ss_pred EECCCcCceecccHHHHHHHHHHcCC-EEEEEcchhcCCcccCccccCCCEEEEehhhh-cCCCceEEEEEccCCCCC--
Confidence 99999999999999999999999999 79999999999999999988999999999995 889999999999876654
Q ss_pred CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccc-c
Q 012991 276 HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEIC-A 354 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~ 354 (452)
..+.. .+++. ...+..|+++...++++..+++++.+ +.+.+.++.+++++++.+.|.+++++.+..+...+ .
T Consensus 224 ~~~~~---~g~~~-~~~~~~gt~~~~~~~al~~al~~~~~---~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p 296 (402)
T TIGR02006 224 LEALI---HGGGH-ERGMRSGTLPTHQIVGMGEAFRIAKE---EMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVP 296 (402)
T ss_pred CCcee---cCCCc-cCCccCCCccHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCC
Confidence 23322 22111 22345689999999999999998875 68888999999999999999888777665443222 2
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC----CccceEEecccccCCHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG----IITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~iRis~~~~~t~~di~ 430 (452)
.++.+.++ ..+...+...| .+|.++.+..+...... .....+..+ ...+++|+|++.+||.+||+
T Consensus 297 ~~~~v~f~-------~~~~~~~~~~l---~~i~v~~G~~c~~~~~~-~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid 365 (402)
T TIGR02006 297 GNLNVSFN-------YVEGESLIMAL---KDLAVSSGSACTSASLE-PSYVLRALGINDELAHSSIRFTIGRFTTEEEID 365 (402)
T ss_pred CeEEEEEe-------CcCHHHHHHhc---CCEEEechhhcCCCCCC-ccHHHHHcCCChhhcCceEEEEecCCCCHHHHH
Confidence 33334333 22345565555 28888776665321100 000000111 23579999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 012991 431 KFRDAVILLVEEG 443 (452)
Q Consensus 431 ~l~~~l~~~~~~~ 443 (452)
+++++|+++++.-
T Consensus 366 ~l~~~l~~~~~~~ 378 (402)
T TIGR02006 366 YAVKLVKSAIDKL 378 (402)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=310.25 Aligned_cols=364 Identities=14% Similarity=0.151 Sum_probs=278.5
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
++|||+++.++.|+.|.+++.+++....++++.. .+......++++|+.+++++|++ +++|++++|+|+++..++.+
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~ 79 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE-EQGIYFTSGGTESNYLAIQS 79 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHHHHHHHH
Confidence 4899999999999999999998887665555432 23455678899999999999996 78999999999999998887
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+.+.+ .++|++|+++..+|+++...+.. ++..|++++.+++ +.++.+ ++++++.+ .+++++|++
T Consensus 80 ~~~~~----~~~g~~vv~~~~~h~s~~~~~~~-~~~~g~~v~~v~~----~~~~~~d~~~l~~~l------~~~~~lv~~ 144 (381)
T PRK02948 80 LLNAL----PQNKKHIITTPMEHASIHSYFQS-LESQGYTVTEIPV----DKSGLIRLVDLERAI------TPDTVLASI 144 (381)
T ss_pred HHHhc----cCCCCEEEECCcccHHHHHHHHH-HHhCCCEEEEEee----CCCCCCCHHHHHHhc------CCCCEEEEE
Confidence 74321 25789999999999998888776 4778999999954 333444 89999888 467899999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++|+||.+.|+++|.++|+++|+ ++++|+++++|..++++..+++|++++|+||+ +||+|+|+++++++....
T Consensus 145 ~~~~n~tG~~~~~~~I~~l~~~~~~-~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~~~~--- 219 (381)
T PRK02948 145 QHANSEIGTIQPIAEIGALLKKYNV-LFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKI-YGPKGVGAVYINPQVRWK--- 219 (381)
T ss_pred ECCcCCcEeehhHHHHHHHHHHcCC-EEEEEChhhccccccCcccCCCCEEEecHHhc-CCCCcEEEEEEcCCCCCC---
Confidence 9999999999999999999999999 79999999999999998888999999999995 889999999998875221
Q ss_pred CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC--cc-cc
Q 012991 277 HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP--PE-IC 353 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~-~~ 353 (452)
+.. .+. .....+..++++...++++.++++...+ +.++++++++++++++.+.|.++ ++++... .. ..
T Consensus 220 -~~~---~~~-~~~~~~~~~t~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~ 290 (381)
T PRK02948 220 -PVF---PGT-THEKGFRPGTVNVPGIAAFLTAAENILK---NMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCL 290 (381)
T ss_pred -Ccc---cCC-CCCCCcCCCCccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCc
Confidence 111 010 0112334588999999999999988754 57888999999999999999887 5543321 11 12
Q ss_pred cceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC----CCccceEEecccccCCHHHH
Q 012991 354 AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD----GIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~iRis~~~~~t~~di 429 (452)
..++.|.++ +.++.++...|.+ +||.++.+..|...- ..+....... ....+++|+|++.+||++|+
T Consensus 291 ~~i~~~~~~-------~~~~~~~~~~l~~-~gI~v~~g~~c~~~~-~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di 361 (381)
T PRK02948 291 PHIIGVTIK-------GIEGQYTMLECNR-RGIAISTGSACQVGK-QEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQI 361 (381)
T ss_pred CCEEEEEeC-------CCCHHHHHHhccc-CCEEEEchHhcCCCC-CCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHH
Confidence 345666654 3456778888855 599998766542100 0000000000 01247999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
++++++|+++++.
T Consensus 362 ~~l~~~l~~~~~~ 374 (381)
T PRK02948 362 DTTIHALETIGNQ 374 (381)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=305.50 Aligned_cols=353 Identities=13% Similarity=0.137 Sum_probs=277.6
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
..+|.++++...|++|++++..... .+....+.+.++++++.+++++|.+..+.++++++||+++..++.++
T Consensus 9 ~~~l~~pGP~~~~~~V~~a~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~- 80 (401)
T PLN02409 9 RNHLFVPGPVNIPERVLRAMNRPNE-------DHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT- 80 (401)
T ss_pred CceeccCCCCCCCHHHHHHhcCCCC-------CCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc-
Confidence 3456677788888889999876431 12345667889999999999999963357888999999999888765
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
+++||+|+++++.|.+.. |..++++.|++++.++.++. ..+ ++++++.++... .+++++|+++|
T Consensus 81 -------~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~----~~~~~~~l~~~l~~~~--~~~~k~v~~~~ 145 (401)
T PLN02409 81 -------LSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWG----QGADLDILKSKLRQDT--NHKIKAVCVVH 145 (401)
T ss_pred -------CCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCC----CCCCHHHHHHHHhhCc--CCCccEEEEEe
Confidence 689999999999998753 55557888999999976421 123 788999885310 13799999999
Q ss_pred cCCCCcccccHHHHHHH--HHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 199 ITSMPCVVIPVRKLVKI--CRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l--~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++|+||.+.|+++|.++ |+++|+ ++++|++|++|..++++..+++|++++|+|||+++|+|+|+++++++.++. +.
T Consensus 146 ~~~~tG~~~~~~~i~~l~~~~~~g~-~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~-~~ 223 (401)
T PLN02409 146 NETSTGVTNDLAGVRKLLDCAQHPA-LLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEA-SK 223 (401)
T ss_pred ecccccccCCHHHHHHHHhhhccCc-EEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHH-Hh
Confidence 99999999999999999 999999 899999999999999999999999999999999999999999999887765 21
Q ss_pred CCc-eeccCCCCcc-----cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 012991 277 HPV-VSHEFGNGLP-----IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP 350 (452)
Q Consensus 277 ~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 350 (452)
... ....++.... ....+.+|++...++++.++++++.+. |.++++++.+++++++++.|.++ |+++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~--G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~ 300 (401)
T PLN02409 224 TAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEE--GLENVIARHARLGEATRLAVEAW-GLKLCTKK 300 (401)
T ss_pred cCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCC
Confidence 100 0001110000 011224688888899999999998865 99999999999999999999886 88877653
Q ss_pred -cc-ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHH
Q 012991 351 -EI-CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 351 -~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~d 428 (452)
.. ...++++.+| .+.++.++.+.|.+++||.+..+... ..++.+||+.+.+++.+|
T Consensus 301 ~~~~s~~v~~~~~p------~~~~~~~l~~~l~~~~~i~i~~G~~~----------------~~~~~~Rig~~g~~~~~~ 358 (401)
T PLN02409 301 PEWRSDTVTAVVVP------EGIDSAEIVKNAWKKYNLSLGLGLNK----------------VAGKVFRIGHLGNVNELQ 358 (401)
T ss_pred hhhcccceEEEeCC------CCCCHHHHHHHHHHhCCEEEEcCCCc----------------ccCCEEEEcCCCCCCHHH
Confidence 22 2356778777 46677789888877789999765542 245799999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 012991 429 YEKFRDAVILLVEE 442 (452)
Q Consensus 429 i~~l~~~l~~~~~~ 442 (452)
+.+++++|++.+..
T Consensus 359 ~~~~~~~~~~~l~~ 372 (401)
T PLN02409 359 LLGALAGVEMVLKD 372 (401)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=293.82 Aligned_cols=364 Identities=16% Similarity=0.175 Sum_probs=270.8
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHH--HHhcCCchh---hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQL--KFLQQPDDF---YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
.+|||+++.++.|+.|.+++.+++. ....++... ......+.++++++.+++++|++ ++++++++|+|++++++
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~-~~~v~~~~g~t~al~~~ 82 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD-PREIVFTSGATESDNLA 82 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC-cCeEEEeCCHHHHHHHH
Confidence 5899999999999999999988876 333444431 12223467899999999999996 68899999999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+.++.+. ..++||+|++++.+|+++...+..+ ...|++++.+++ +.++.+ ++++++++ ++++++
T Consensus 83 l~~l~~~----~~~~gd~Vi~~~~~~~s~~~~~~~~-~~~g~~~~~v~~----~~~g~~d~~~l~~~i------~~~t~l 147 (404)
T PRK14012 83 IKGAAHF----YQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLDP----QSNGIIDLEKLEAAM------RDDTIL 147 (404)
T ss_pred HHHHHHh----hcCCCCEEEEecCccHHHHHHHHHH-HhCCCEEEEEcc----CCCCcCCHHHHHHhc------CCCCEE
Confidence 8877421 1368999999999999998888764 556999999954 344555 89999999 578899
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCcccc
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSS 273 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~ 273 (452)
|++++++|+||.+.|+++|.++|+++|+ ++|+|++|+.|..+++...+++|++++|+|| ++||.|+|+++++++....
T Consensus 148 v~~~~~~n~tG~~~~~~~I~~la~~~g~-~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K-~~gp~g~G~l~~~~~~~~~ 225 (404)
T PRK14012 148 VSIMHVNNEIGVIQDIAAIGEICRERGI-IFHVDAAQSVGKVPIDLSKLKVDLMSFSAHK-IYGPKGIGALYVRRKPRVR 225 (404)
T ss_pred EEEECcCCCccchhhHHHHHHHHHHcCC-EEEEEcchhcCCcccCcccCCCCEEEEehhh-ccCCCceEEEEEecCCCCC
Confidence 9999999999999999999999999999 7999999999999988888899999999999 5888899999999876543
Q ss_pred CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc-c
Q 012991 274 DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE-I 352 (452)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~ 352 (452)
..+.. .|++. ...+..|+++...+.++.++++.... +.+.+.++.+++++++.+.|.+++++.+..+.. .
T Consensus 226 --~~~~~---~g~~~-~~~~~~gt~~~~~~~~l~~al~~~~~---~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~ 296 (404)
T PRK14012 226 --LEAQM---HGGGH-ERGMRSGTLPTHQIVGMGEAARIAKE---EMATENERIRALRDRLWNGIKDIEEVYLNGDLEQR 296 (404)
T ss_pred --CCcee---cCCCc-cCCccCCCcCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 22321 22221 11233577888788888888887764 567788899999999999998877766543321 1
Q ss_pred c--cceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC----CCccceEEecccccCCH
Q 012991 353 C--AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD----GIITGYARISHQVYNTL 426 (452)
Q Consensus 353 ~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~iRis~~~~~t~ 426 (452)
. ...++|.+. +..++...|. ++.+..+..+.....+. ....... ....+.+|+|++.++|+
T Consensus 297 ~~~~~~~~~~~~---------~~~~~~~~l~---~~~i~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~iRls~~~~~t~ 363 (404)
T PRK14012 297 VPGNLNVSFNYV---------EGESLIMALK---DLAVSSGSACTSASLEP-SYVLRALGLNDELAHSSIRFSLGRFTTE 363 (404)
T ss_pred CCCEEEEEEeCc---------CHHHHHHhCC---CeEEEchhhhCCCCCCC-CHHHHHcCCChhhcCceEEEEecCCCCH
Confidence 1 224555543 2345767663 56555443332110000 0000000 12357999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 012991 427 EDYEKFRDAVILLVEEG 443 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~~ 443 (452)
+||++++++|+++++.-
T Consensus 364 ~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 364 EEIDYAIELVRKSIGKL 380 (404)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988643
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=284.52 Aligned_cols=320 Identities=18% Similarity=0.259 Sum_probs=255.9
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchh---hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHh
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDF---YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI 118 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l 118 (452)
|||+++.++.|+.|.+++.+++.....+++.. +.....+.++++++.+++++|++ +++|++|+|+|++++.++.++
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l 79 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGAD-TEEVIFTSGATESNNLAILGL 79 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHH
Confidence 79999999999999999999886555565542 23345577899999999999996 789999999999999998877
Q ss_pred hcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 119 GRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 119 ~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
... ...+| ++|+++..+|+++...+..+ +..|++++.+++ +.++.+ ++++++.+ .+++++|++
T Consensus 80 ~~~----~~~~g~~~vi~~~~~~~s~~~~~~~~-~~~G~~v~~v~~----~~~~~~d~~~l~~~l------~~~~~lv~~ 144 (353)
T TIGR03235 80 ARA----GEQKGKKHIITSAIEHPAVLEPIRAL-ERNGFTVTYLPV----DESGRIDVDELADAI------RPDTLLVSI 144 (353)
T ss_pred HHh----cccCCCCeeeEcccccHHHHHHHHHH-HhcCCEEEEEcc----CCCCcCCHHHHHHhC------CCCCEEEEE
Confidence 321 01345 78999999999998888774 667999999954 333444 89999988 567899999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++|+||.+.|+++|.++|+++|+ ++++|++|+.|..++++..+++|++++|+||| +||.|+|+++++++.......
T Consensus 145 ~~~~n~tG~~~~~~~I~~l~~~~~~-~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~~~~~ 222 (353)
T TIGR03235 145 MHVNNETGSIQPIREIAEVLEAHEA-FFHVDAAQVVGKITVDLSADRIDLISCSGHKI-YGPKGIGALVIRKRGKPKAPL 222 (353)
T ss_pred EcccCCceeccCHHHHHHHHHHcCC-EEEEEchhhcCCccccccccCCCEEEeehhhc-CCCCceEEEEEccCccccccc
Confidence 9999999999999999999999999 79999999999999999988999999999997 799999999999886532011
Q ss_pred CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc-cccc
Q 012991 277 HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE-ICAA 355 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~ 355 (452)
.+.. ++.+. ...+..++++...++++.++++++.. +.+.+.++++++++++++.|.+ +|+++..++. ....
T Consensus 223 ~~~~---~~~~~-~~~~~~gt~~~~~~~al~~al~~~~~---~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~ 294 (353)
T TIGR03235 223 KPIM---FGGGQ-ERGLRPGTLPVHLIVGMGEAAEIARR---NAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPH 294 (353)
T ss_pred Ccee---eCCCC-cCccccCCCChHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCC
Confidence 2221 21111 23345689999999999999998764 8899999999999999999987 6888765443 3356
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
++.|.++ +.+..++.+.|. + +|.+..+..|..
T Consensus 295 i~~~~~~-------~~~~~~v~~~L~-~-~i~v~~g~~~~~ 326 (353)
T TIGR03235 295 ILNFSID-------GVNSEALIVNLR-A-DAAVSTGSACSS 326 (353)
T ss_pred EEEEEeC-------CcCHHHHHHHHh-C-CeEEEchhhcCC
Confidence 7888775 456778999994 4 899987776643
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=287.74 Aligned_cols=343 Identities=17% Similarity=0.167 Sum_probs=259.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccC
Q 012991 46 GSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG 125 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~ 125 (452)
+++.+.|+.+.+++..... ........+..+++++.+++++|++..+.+++++|+|+|+.+++.++
T Consensus 5 ~~~~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~------- 70 (356)
T cd06451 5 PGPSNVPPRVLKAMNRPML-------GHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL------- 70 (356)
T ss_pred CCCcCCCHHHHHHhCCCcc-------CCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh-------
Confidence 4566777779999865321 11223345678999999999999953456788999999999999876
Q ss_pred CCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 126 RFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
+++|++|+++.+.|++.. +...++..|.+++.++. +.++.+ ++++++.++ .+++++|++++++|++|
T Consensus 71 -~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~----~~~~~~~~~~l~~~i~-----~~~~~~v~i~~~~~~~G 138 (356)
T cd06451 71 -LEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEK----PWGEAVSPEEIAEALE-----QHDIKAVTLTHNETSTG 138 (356)
T ss_pred -CCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeec----CCCCCCCHHHHHHHHh-----ccCCCEEEEeccCCCcc
Confidence 478999999988887632 33335777999999964 322334 899999984 23889999999999999
Q ss_pred ccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC--Cceec
Q 012991 205 VVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH--PVVSH 282 (452)
Q Consensus 205 ~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~--~~~~~ 282 (452)
.+.|+++|.++|+++|+ ++++|++|++|..++++...++|++++|+|||+++|.|+|+++++++++.. +.. ....+
T Consensus 139 ~~~~~~~i~~~a~~~~~-~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~-~~~~~~~~~~ 216 (356)
T cd06451 139 VLNPLEGIGALAKKHDA-LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALER-IKKKTKPKGF 216 (356)
T ss_pred cccCHHHHHHHHHhcCC-EEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHH-HHhcCCCCce
Confidence 99999999999999999 799999999998888887778999999999999999999999999887654 211 11111
Q ss_pred cCC-----CCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccc-cce
Q 012991 283 EFG-----NGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEIC-AAM 356 (452)
Q Consensus 283 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~ 356 (452)
.+. ........+.++++...++++.++++++... |.+.+.++..++++++.+.|.+. ++.+..++... ..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 293 (356)
T cd06451 217 YFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEE--GLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTV 293 (356)
T ss_pred eecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCce
Confidence 000 0000111345677777788888999988864 88999999999999999999987 77776543322 334
Q ss_pred EEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHH
Q 012991 357 VMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
+++.++ .+.+..++++.|.+++||.+..+..+ ..++++|+|++.++|++||++++++|
T Consensus 294 ~~~~~~------~~~~~~~~~~~L~~~~gI~~~~g~~~----------------~~~~~iRis~~~~~~~e~v~~~~~~l 351 (356)
T cd06451 294 TAVLVP------EGVDGDEVVRRLMKRYNIEIAGGLGP----------------TAGKVFRIGHMGEATREDVLGVLSAL 351 (356)
T ss_pred EEEECC------CCCCHHHHHHHHHHhCCEEEeccccc----------------ccCCEEEEecCCCCCHHHHHHHHHHH
Confidence 456655 24567889999977559999765432 23469999999999999999999999
Q ss_pred HHHHh
Q 012991 437 ILLVE 441 (452)
Q Consensus 437 ~~~~~ 441 (452)
+++++
T Consensus 352 ~~~~~ 356 (356)
T cd06451 352 EEALK 356 (356)
T ss_pred HHHhC
Confidence 98763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=279.32 Aligned_cols=344 Identities=16% Similarity=0.146 Sum_probs=252.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC-CCcEEEecChhHHHHHHHHHhhcccc
Q 012991 45 NGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD-VGEISLVDNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 45 ~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~i~~t~g~t~a~~~~~~~l~~~~~ 123 (452)
.+++...++.|.+++.... . ++...+.+.++++++.+++++|+++ .+.|++|+|||++++.++.++
T Consensus 8 ~pgp~~~~~~v~~~~~~~~----~----~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l----- 74 (363)
T TIGR02326 8 TPGPLTTSRTVKEAMLFDW----C----TWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA----- 74 (363)
T ss_pred cCCCCCCCHHHHHHhCCCC----C----CCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc-----
Confidence 3445556666777665432 1 1234567789999999999999962 247999999999999999987
Q ss_pred cCCCCCCCEEEE-eCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCC
Q 012991 124 EGRFHRNDTVLM-LHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITS 201 (452)
Q Consensus 124 ~~~~~~g~~Vl~-~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n 201 (452)
+.+++++++ ....|++. +..++++.|.+++.++++ .++.+ ++++++.+++ ..++++|.+++++|
T Consensus 75 ---~~~~~~vlv~~~~~~~~~---~~~~a~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~ 140 (363)
T TIGR02326 75 ---VPKDGKLLVVINGAYGAR---IVQIAEYLGIPHHVVDTG----EVEPPDVVEVEAILAA----DPAITHIALVHCET 140 (363)
T ss_pred ---CCCCCeEEEEeCChhhHH---HHHHHHHcCCceEEEeCC----CCCCCCHHHHHHHHhh----CCCccEEEEEeecC
Confidence 366776655 45555442 334467789999999652 23334 8899998864 34677899999999
Q ss_pred CCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCcee
Q 012991 202 MPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVS 281 (452)
Q Consensus 202 ~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~ 281 (452)
+||...|+++|.++|+++|+ ++++|++|++|..++++..+++|++++|+|||++||+|+|+++++++.++. +......
T Consensus 141 ~tG~~~~i~~I~~l~~~~g~-~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~-~~~~~~~ 218 (363)
T TIGR02326 141 TTGILNPIEAVAKLAHRHGK-VTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAA-CKGNARS 218 (363)
T ss_pred CccccCcHHHHHHHHHHcCC-EEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHH-hhcCCCc
Confidence 99999999999999999999 899999999999999999999999999999999999999999999887764 2111100
Q ss_pred ccCCCC-----cc-cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc-
Q 012991 282 HEFGNG-----LP-IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA- 354 (452)
Q Consensus 282 ~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~- 354 (452)
...... .. .......+++...++++.++++.+.. .+|++++.++++++++++++.|.++ |+.+..++...+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~-~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 296 (363)
T TIGR02326 219 LSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEK-EGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSP 296 (363)
T ss_pred eeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCc
Confidence 000000 00 00011235677788888888988764 2368999999999999999999887 777665443224
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRD 434 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~ 434 (452)
.+.+|.+++. ...+..++.+.|.++ ||.+..+..+ ..+++|++++.+++.+|++++++
T Consensus 297 ~~~~~~~~~~----~~~~~~~v~~~L~~~-gi~v~~g~~~-----------------~~~~iRi~~~~~~~~edv~~~l~ 354 (363)
T TIGR02326 297 IITSFYSPED----PDYRFADFYQRLKEQ-GFVIYPGKVS-----------------QVDCFRIGNIGEVDAADITRLLT 354 (363)
T ss_pred eEEEEECCCC----CCCCHHHHHHHHHHC-CEEEECCcCC-----------------CCCEEEEecCCCCCHHHHHHHHH
Confidence 3467777620 024567888999765 9999654321 23689999988899999999999
Q ss_pred HHHHHHh
Q 012991 435 AVILLVE 441 (452)
Q Consensus 435 ~l~~~~~ 441 (452)
+|++++.
T Consensus 355 ~l~~~l~ 361 (363)
T TIGR02326 355 AIGKAMY 361 (363)
T ss_pred HHHHHhC
Confidence 9998763
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=265.76 Aligned_cols=350 Identities=17% Similarity=0.207 Sum_probs=280.6
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhc
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
+.|. +++...++.|+++|..-. ..+++..+...+.++.+.+...++.+..+.++++++||.+++.++.++
T Consensus 7 ~Ll~-PGP~~v~~~V~~am~~~~-------~~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl-- 76 (383)
T COG0075 7 LLLT-PGPVPVPPRVLLAMARPM-------VGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL-- 76 (383)
T ss_pred eeee-CCCCCCCHHHHHHhcCCC-------CCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhc--
Confidence 3444 456666677998887643 224567788999999999999999973456677889999999999987
Q ss_pred ccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEecc
Q 012991 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHI 199 (452)
Q Consensus 121 ~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~ 199 (452)
+.|||+|++......+ ..|..++++.|.+++.+..+|. ..+ ++++++++++ ++++++|.++|.
T Consensus 77 ------~~pgdkVLv~~nG~FG--~R~~~ia~~~g~~v~~~~~~wg----~~v~p~~v~~~L~~----~~~~~~V~~vH~ 140 (383)
T COG0075 77 ------VEPGDKVLVVVNGKFG--ERFAEIAERYGAEVVVLEVEWG----EAVDPEEVEEALDK----DPDIKAVAVVHN 140 (383)
T ss_pred ------cCCCCeEEEEeCChHH--HHHHHHHHHhCCceEEEeCCCC----CCCCHHHHHHHHhc----CCCccEEEEEec
Confidence 6899999998766544 5677779999999999976543 223 8999999975 578899999999
Q ss_pred CCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCc
Q 012991 200 TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPV 279 (452)
Q Consensus 200 ~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~ 279 (452)
.++||+..|+++|+++|++||. ++|||++.++|..+++++.|++|+++.+.+|+|.+|+|+|++.++++..+. +....
T Consensus 141 ETSTGvlnpl~~I~~~~k~~g~-l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~-~~~~~ 218 (383)
T COG0075 141 ETSTGVLNPLKEIAKAAKEHGA-LLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEA-IEERK 218 (383)
T ss_pred cCcccccCcHHHHHHHHHHcCC-EEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHH-HhcCC
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999877765 21111
Q ss_pred ee-ccCCCCc---cc-c-cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc-c
Q 012991 280 VS-HEFGNGL---PI-E-SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE-I 352 (452)
Q Consensus 280 ~~-~~~~~~~---~~-~-~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~ 352 (452)
.. +.+.... .. + ..++.||+...++++..+++.+.+. |+++..+|.+.+.+++++++.++ |+++...+. .
T Consensus 219 ~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~E--Gle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~ 295 (383)
T COG0075 219 HPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEE--GLEARIARHRRLAEALRAGLEAL-GLELFADPERR 295 (383)
T ss_pred CCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccC
Confidence 00 1111100 01 1 4677899999999999999999964 99999999999999999999988 888766443 3
Q ss_pred ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHH
Q 012991 353 CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l 432 (452)
...+..+.+| .+.+..++...+++++|+.+..+..+ ..+..+||+.+.+-+.+|+..+
T Consensus 296 s~tvta~~~P------~g~~~~~~~~~~~~~~g~~i~gg~~~----------------l~gkifRIGhMG~~~~~dv~~~ 353 (383)
T COG0075 296 SPTVTAIKVP------EGVDDKKVRRALLKEYGVEIAGGQGP----------------LKGKIFRIGHMGNVRPEDVLAA 353 (383)
T ss_pred CCceEEEECC------CCCCcHHHHHHHHHhCCEEecccccc----------------cCccEEEEecCccCCHHHHHHH
Confidence 3567778888 45555555556777789998655543 4467999999988899999999
Q ss_pred HHHHHHHHhcc
Q 012991 433 RDAVILLVEEG 443 (452)
Q Consensus 433 ~~~l~~~~~~~ 443 (452)
+.+|..++.+-
T Consensus 354 l~ale~~L~~~ 364 (383)
T COG0075 354 LAALEAALREL 364 (383)
T ss_pred HHHHHHHHHHc
Confidence 99999998653
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=278.61 Aligned_cols=348 Identities=13% Similarity=0.068 Sum_probs=251.7
Q ss_pred CCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEec-ChhHHHHHH
Q 012991 36 HQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVD-NATTAAAIV 114 (452)
Q Consensus 36 ~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~-g~t~a~~~~ 114 (452)
+.+..+||++|+.+..|..|++++...... ..+.+..+.+.++++|+.+++++++++.++|+|++ |||.+++.+
T Consensus 9 ~~~~~~~f~~Gp~~~~~~~v~~a~~~~~~~-----~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~ 83 (378)
T PRK03080 9 LRPADPRFSSGPCKKRPGWQLEALADALLG-----RSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMA 83 (378)
T ss_pred cCCCCCCcCCCCcCCChHHHHHHHHhhhcc-----cCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHH
Confidence 335567899888888888899999865321 11334567889999999999999986456898885 899999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc-EEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG-SVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~ 192 (452)
+.++ +++++.+++...+|++.... .++++.|+ +++.++.++. +.+ +++ + .. ++
T Consensus 84 ~~~l--------~~~~~~~vi~~g~f~~~~~~--~~~~~~g~~~v~~~~~~~g----~~~d~~~----i------~~-~~ 138 (378)
T PRK03080 84 LWSL--------LGARRVDHLAWESFGSKWAT--DVVKQLKLEDPRVLEADYG----SLPDLSA----V------DF-DR 138 (378)
T ss_pred HHhc--------CCCCcceEEEeCHHHHHHHH--HHHhhcCCCCceEeccCCC----CCCCHhh----c------CC-CC
Confidence 9987 34433334446788774322 22466788 8888865321 111 332 3 12 56
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccc
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILS 272 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~ 272 (452)
+|.++|.+|.||.+.|+++|++ |++|+ +++||++|++|+.++|+.. +|++++|+|||+++|+|+|+++++++.++
T Consensus 139 ~V~~~h~~t~tG~~~pi~~I~~--~~~g~-~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~ 213 (378)
T PRK03080 139 DVVFTWNGTTTGVRVPVARWIG--ADREG-LTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVE 213 (378)
T ss_pred CEEEEecCCccceeccchhhcc--ccCCC-eEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHH
Confidence 7999999999999999999999 88999 8999999999999999986 69999999999999999999999998886
Q ss_pred cCCCCCce-ec--------cCCCCcc---cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 273 SDMHHPVV-SH--------EFGNGLP---IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 273 ~~l~~~~~-~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
. + .+.. .+ ..+.... ......+++++..++++.++++++.+. +|++++.++.+++++++++.|++
T Consensus 214 ~-~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~-gG~e~i~~r~~~l~~~l~~~l~~ 290 (378)
T PRK03080 214 R-L-ESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSI-GGLDALIARTAANASVLYDWAEK 290 (378)
T ss_pred h-h-hcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHh
Confidence 5 2 2221 00 0000000 111223567777778889999999862 48999999999999999999999
Q ss_pred HcCCCcCCC-cccc-cceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 341 AWGTSLGSP-PEIC-AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 341 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
++++.+..+ +..+ ..++.|.+++. ..+.+. ++...|.++ ||.+..+... ..++.+|+
T Consensus 291 ~~~~~~~~~~~~~~s~~i~~~~~~~~---~~~~~~-~~~~~l~~~-~i~v~~g~~~----------------~~~~~vRi 349 (378)
T PRK03080 291 TPWATPLVADPATRSNTSVTLDFVDA---QAAVDA-AAVAKLLRE-NGAVDIEPYR----------------DAPNGLRI 349 (378)
T ss_pred CCCcccccCCccccCccEEEEEcCCc---hHHHHH-HHHHHHHHc-CCeecccccc----------------CCCCcEEE
Confidence 866666542 2222 35788887620 002333 355566565 8877543221 12468999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++.|+|.+||++++++|+++++.
T Consensus 350 s~~~~~t~~di~~l~~al~~~~~~ 373 (378)
T PRK03080 350 WCGPTVEPADVEALTPWLDWAFER 373 (378)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=275.64 Aligned_cols=379 Identities=13% Similarity=0.016 Sum_probs=267.4
Q ss_pred CCCCCCCCHHHHHhhhccCCCCeEEeccCC--------CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHH
Q 012991 18 PKLTRCISEAEIRDEFSHHQHGVARINNGS--------FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAV 89 (452)
Q Consensus 18 ~~~~~~~~~~~ir~~~~~~~~~~~~l~~~~--------~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (452)
+-|......+++-+++.. .+|+++.. +++..+.+.+.+...+.....+|+.. +.. .++.+++++++
T Consensus 16 ~~p~~~~~~~~~~~~~~~----~iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np~s~-~~~-~~le~~~~~~l 89 (431)
T TIGR01788 16 RMPEEEMPPDAAYQLIHD----ELSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDEY-PQT-AEIENRCVNML 89 (431)
T ss_pred cCCCCCCCHHHHHHHHHH----HhhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCcccC-ccH-HHHHHHHHHHH
Confidence 334456677777777752 44666665 55555558888888876555566553 333 38899999999
Q ss_pred HhHhCCCCC-CcEEE--ecChhHHHHHHHHHhhccccc-----CCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEE
Q 012991 90 KDLINADDV-GEISL--VDNATTAAAIVLQQIGRGFTE-----GRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEV 161 (452)
Q Consensus 90 a~~~~~~~~-~~i~~--t~g~t~a~~~~~~~l~~~~~~-----~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~ 161 (452)
++++|++.+ +++.+ |+|||+|+++++.+....+.. .....+.+|+++..+|+|+.++... .|++++.+
T Consensus 90 a~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~----lg~~v~~i 165 (431)
T TIGR01788 90 ADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARY----FDVELREV 165 (431)
T ss_pred HHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHH----cCceeEEE
Confidence 999999622 34544 899999999998776422100 0001124799999999998777544 58999999
Q ss_pred eCCCCCCCh-HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc------CCCEEEEecccc--
Q 012991 162 QLPFPLASE-EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE------GVDQVFVDAAHA-- 231 (452)
Q Consensus 162 ~~~~~~~~~-~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~------~~~~~ivD~a~~-- 231 (452)
++ +.. +.+ +++|+++| .++|.+|++++.+|.+|.+.|+++|+++|+++ |+ ++|+|++|+
T Consensus 166 ~~----d~~~~~vd~~~L~~~i------~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~-~~HvDaaq~g~ 234 (431)
T TIGR01788 166 PM----DPGRYVIDPEQVVEAV------DENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDI-PIHVDAASGGF 234 (431)
T ss_pred ec----CCCceeeCHHHHHHHH------hhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCc-eEEEecccHHH
Confidence 54 443 355 99999999 46789999999999999999999999999999 99 699999999
Q ss_pred -----cCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc-c-ccCC--CCCceeccCCCCcccccccccccCccc
Q 012991 232 -----MGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI-L-SSDM--HHPVVSHEFGNGLPIESAWIGTRDYSA 302 (452)
Q Consensus 232 -----~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~-~-~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (452)
.+..++++...++|++++|+|||+++|.|+|+++++++. + .. + ..++ .++.. ......++.+...
T Consensus 235 ~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~-~~~~~~y----l~~~~-~~~t~~~sR~g~~ 308 (431)
T TIGR01788 235 IAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEE-LIFHVNY----LGGDE-PTFTLNFSRPANQ 308 (431)
T ss_pred HHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchh-heecccc----cCCCC-CCcceecCchHHH
Confidence 455566666668899999999997799999999998752 2 21 1 1112 12111 1111122333223
Q ss_pred cccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhh
Q 012991 303 QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRV 382 (452)
Q Consensus 303 ~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 382 (452)
.++.+..+..+... |++++.++..++++++.+.|.+.+++++..+.. ..++++|.++... ..+.+..++.+.|.+
T Consensus 309 al~~w~~l~~lG~~--G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~-~~~iV~Fr~~~~~--~~~~~~~~l~~~L~~ 383 (431)
T TIGR01788 309 VIAQYYNFLRLGRE--GYRKIMQNSLDVARYLAEEIAKLGPFEIISDGS-GIPLVAFKLKDDA--DPGYTLYDLSHRLRE 383 (431)
T ss_pred HHHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCC-CceEEEEEeCCCC--CCCcCHHHHHHHHHH
Confidence 33344444544444 899999999999999999999998898887621 3789999986210 113567789999976
Q ss_pred hcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 383 RFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 383 ~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+ |+.+.....+.. ....-++|+++....+.+.++++++.|++++..
T Consensus 384 ~-G~~~~~~~~p~~-------------~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (431)
T TIGR01788 384 R-GWIVPAYTLPKN-------------AEDIVVMRIVVREGFSRDLAELLIEDIEAALAY 429 (431)
T ss_pred C-CCcccCCCCCCc-------------cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 4 998743332211 123457999998888999999999999998754
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=268.05 Aligned_cols=345 Identities=15% Similarity=0.148 Sum_probs=252.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC-CCcEEEecChhHHHHHHHHHhhccccc
Q 012991 46 GSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD-VGEISLVDNATTAAAIVLQQIGRGFTE 124 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~i~~t~g~t~a~~~~~~~l~~~~~~ 124 (452)
+++...++.+++++.... . +....+.+.++++++.+++++|+++ .+.+++++|||+++..++.++
T Consensus 11 pgP~~~~~~~~~a~~~~~----~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l------ 76 (368)
T PRK13479 11 PGPLTTSRTVREAMLRDW----G----SWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL------ 76 (368)
T ss_pred CCCCCCCHHHHHHhCCCC----C----CCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc------
Confidence 334444555777765532 1 1122345678999999999999962 256889999999999999987
Q ss_pred CCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC
Q 012991 125 GRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP 203 (452)
Q Consensus 125 ~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t 203 (452)
..++++|++..+.+.+. .+..++++.|++++.++.+ .++.+ ++++++++++ ..++++|++++++|+|
T Consensus 77 --~~~~~~vlv~~~~~~~~--~~~~~~~~~g~~~~~i~~~----~~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~t 144 (368)
T PRK13479 77 --VPRDGKVLVPDNGAYGA--RIAQIAEYLGIAHVVLDTG----EDEPPDAAEVEAALAA----DPRITHVALVHCETTT 144 (368)
T ss_pred --cCCCCeEEEEeCCchHH--HHHHHHHHcCCcEEEEECC----CCCCCCHHHHHHHHHh----CCCCcEEEEEcccCcc
Confidence 46788888876665543 2334467789999999653 22334 8889988853 2467899999999999
Q ss_pred cccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceecc
Q 012991 204 CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHE 283 (452)
Q Consensus 204 G~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~ 283 (452)
|...|+++|.++|+++|+ ++++|+++++|..++++..+++|++++|+|||++||+|+|++++++++++. +......+.
T Consensus 145 G~~~~~~~i~~l~~~~~~-~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~-~~~~~~~~~ 222 (368)
T PRK13479 145 GILNPLDEIAAVAKRHGK-RLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEA-CKGNSRSLS 222 (368)
T ss_pred ccccCHHHHHHHHHHcCC-EEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHH-hhcCCCCee
Confidence 999999999999999999 899999999999888988889999999999999999999999999887765 211110000
Q ss_pred CCC----C-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc-cccceE
Q 012991 284 FGN----G-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE-ICAAMV 357 (452)
Q Consensus 284 ~~~----~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~ 357 (452)
... . ......+..+++...++++.++++.+.+ .++.++..+++.++++++++.|.++ |+++..++. ....++
T Consensus 223 ~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 300 (368)
T PRK13479 223 LDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEE-EGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIV 300 (368)
T ss_pred ecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEE
Confidence 000 0 0000112236777778888889987765 2468888899999999999999887 777654432 223456
Q ss_pred EEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 358 MVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
.|.++.. ...+..++.+.|.++ ||.+..+.. ...+++|+++..+++.+|+++++++|+
T Consensus 301 ~~~~~~~----~~~~~~~l~~~L~~~-gi~v~~g~~-----------------~~~~~iRis~~~~~t~edi~~~l~~L~ 358 (368)
T PRK13479 301 TFHAPAD----PAYDFKEFYERLKEQ-GFVIYPGKL-----------------TQVDTFRIGCIGDVDAADIRRLVAAIA 358 (368)
T ss_pred EEECCCC----CCcCHHHHHHHHHHC-CEEEecCCC-----------------CCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 6666521 124567899999775 999964321 113589999888899999999999999
Q ss_pred HHHhc
Q 012991 438 LLVEE 442 (452)
Q Consensus 438 ~~~~~ 442 (452)
++++.
T Consensus 359 ~~l~~ 363 (368)
T PRK13479 359 EALYW 363 (368)
T ss_pred HHHHH
Confidence 99864
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=262.07 Aligned_cols=339 Identities=12% Similarity=0.087 Sum_probs=255.6
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhh--hhhhhHHHHHHHHHHHhHhCCCCCC-cEEEecChhHHHHH
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFY--FNSLRKGILESRAAVKDLINADDVG-EISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~-~i~~t~g~t~a~~~ 113 (452)
+++..++........+....+.+..+.....++|.... +....+..+++++.+++++|+++.+ ..+||+|||+++..
T Consensus 20 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~ 99 (380)
T PRK02769 20 HNQYFNVGYPEAADFDYSALKRFFSFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLY 99 (380)
T ss_pred HhhhcccCCCchhhcCHHHHHHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHH
Confidence 45556666565554543455555555544445665532 2345678899999999999997323 24899999999877
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~ 192 (452)
++.+. | ...++++|++++.+|+|+.+++..+ |.+.+.++ .+.++.+ +++|++.+++. +.+|.
T Consensus 100 a~~~a-r-----~~~~~~~ii~s~~~H~Sv~ka~~~l----g~~~~~V~----~~~~g~id~~~L~~~i~~~---~~~t~ 162 (380)
T PRK02769 100 GCYLA-R-----ELFPDGTLYYSKDTHYSVSKIARLL----RIKSRVIT----SLPNGEIDYDDLISKIKEN---KNQPP 162 (380)
T ss_pred HHHHH-H-----HhCCCcEEEeCCCceehHHHHHHHc----CCCCceec----cCCCCcCcHHHHHHHHHhC---CCCcE
Confidence 66543 2 1356789999999999998887554 77777774 3445666 99999999643 45699
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcC---CCEEEEecccccCCcc-------ccccccCccEEEEcCcccCcCCCCcE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEG---VDQVFVDAAHAMGSIK-------IDVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~---~~~~ivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
+|++++++|++|.+.|+++|+++|+++| + ++|+|+|++.+.++ +++.. ++|++++|+|||+++|.|+|
T Consensus 163 lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~-~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G 240 (380)
T PRK02769 163 IIFANIGTTMTGAIDNIKEIQEILKKIGIDDY-YIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCG 240 (380)
T ss_pred EEEEEeCCCCCcccCCHHHHHHHHHHhCCCce-EEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcE
Confidence 9999999999999999999999999998 7 59999999998885 66665 89999999999977899999
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
+++++++.+.. +. +. ..|-.. .+....||.+....++++++++++... |++++.+++.++++++.+.|.+.
T Consensus 241 ~l~~r~~~~~~-~~-~~--~~yl~~--~d~t~~GSR~g~~~l~lw~aL~~lg~~--G~~~~~~~~~~la~~l~~~L~~~- 311 (380)
T PRK02769 241 IVLAKKKYVER-IS-VD--VDYIGS--RDQTISGSRNGHTALLLWAAIRSLGSK--GLRQRVQHCLDMAQYAVDRLQAN- 311 (380)
T ss_pred EEEEehhhhhh-cc-cC--ccccCC--CCCCccCCCCcHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHhC-
Confidence 99999877664 21 11 111111 123456899988899999999999875 99999999999999999999875
Q ss_pred CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 343 GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
++++...+. ..+++|..| + +++ . + |+.+. ..++++|+++..
T Consensus 312 g~~~~~~p~--~~~v~f~~~---------~-~~~----~-~-~w~l~---------------------~~~~~~hi~~~~ 352 (380)
T PRK02769 312 GIPAWRNPN--SITVVFPCP---------S-ERI----W-K-KWHLA---------------------TSGNQAHIITMP 352 (380)
T ss_pred CCEEEcCCC--ceEEEEcCC---------C-HHH----H-h-CeeEc---------------------ccCCEEEEEECC
Confidence 777665554 678888665 1 122 1 3 66553 123589999999
Q ss_pred cCCHHHHHHHHHHHHHHHhc
Q 012991 423 YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~~~ 442 (452)
.+|.+.|+.+++.|.+....
T Consensus 353 ~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 353 HHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999988864
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=261.63 Aligned_cols=339 Identities=17% Similarity=0.166 Sum_probs=246.3
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCC-CcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDV-GEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
+...++.+.+++.... .. +...+.+.++++++.+++++|+++. ..+++++|||+++..++.++
T Consensus 7 p~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~-------- 70 (355)
T TIGR03301 7 PLSTSATVRDAMLVDW----CH----WDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL-------- 70 (355)
T ss_pred CCCCCHHHHHHhhhhc----cC----CCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc--------
Confidence 4445555888877621 11 1222347799999999999999733 26788999999999999976
Q ss_pred CCCCCEEEEe-CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 127 FHRNDTVLML-HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 127 ~~~g~~Vl~~-~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
+.++++|++. .+.|.+. +..+++..|.+++.++.+ .++.+ .+++++.+++ +.++++|++++++|++|
T Consensus 71 ~~~~~~vi~~~~~~~~~~---~~~~a~~~g~~~~~i~~~----~~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~~G 139 (355)
T TIGR03301 71 VPRDGKLLVLINGAYGER---LAKICEYLGIPHTDLNFS----EYEPPDLNRIEEALAA----DPDITHVATVHHETTTG 139 (355)
T ss_pred cCCCCeEEEECCCchhhH---HHHHHHHcCCceEEEecC----CCCCCCHHHHHHHHHh----CCCceEEEEEecCCccc
Confidence 4667776655 4455442 233367789999999652 22233 7899998864 35678899999999999
Q ss_pred ccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccC
Q 012991 205 VVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEF 284 (452)
Q Consensus 205 ~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~ 284 (452)
.+.|+++|+++|++||+ ++|+|++++.|..++++..+++|++++|++||++|++|+|++++++++++. +........+
T Consensus 140 ~~~~~~~i~~l~~~~~~-~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~-~~~~~~~~~~ 217 (355)
T TIGR03301 140 ILNPLEAIAKVARSHGA-VLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEA-SAGNARSLYL 217 (355)
T ss_pred chhHHHHHHHHHHHcCC-EEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHH-hhCCCCCcee
Confidence 99999999999999999 799999999998888888889999999999998899999999999988765 2111100000
Q ss_pred CCCc-----ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccc-cceEE
Q 012991 285 GNGL-----PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEIC-AAMVM 358 (452)
Q Consensus 285 ~~~~-----~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~ 358 (452)
.... .....+..+++...++++.++++.+.+. +++++..++.+++++++.+.|.++ ++++..++... +.+++
T Consensus 218 ~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~ 295 (355)
T TIGR03301 218 DLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAE-GGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVS 295 (355)
T ss_pred eHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEE
Confidence 0000 0001123467777778888889888753 248889999999999999999886 77655443322 34567
Q ss_pred EEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 359 VGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
+.+|.. ...+..++.+.|.++ ||.+..+..+ . .+++|++++.+++.+|++++++.|++
T Consensus 296 ~~~~~~----~~~~~~~~~~~l~~~-gi~i~~~~~~----------------~-~~~iRis~~~~~~~~~i~~~~~~l~~ 353 (355)
T TIGR03301 296 FLYPDD----PDFDFDDFYQELKER-GFVIYPGKLT----------------L-ADTFRIGTIGEIDAADIERLLEAIKD 353 (355)
T ss_pred EECCCC----CcchHHHHHHHHHHC-CEEEECCccc----------------c-ccEEEEecCCCCCHHHHHHHHHHHHh
Confidence 777620 113556889999765 9998654321 1 26899999988999999999999987
Q ss_pred H
Q 012991 439 L 439 (452)
Q Consensus 439 ~ 439 (452)
+
T Consensus 354 ~ 354 (355)
T TIGR03301 354 A 354 (355)
T ss_pred h
Confidence 5
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=261.85 Aligned_cols=358 Identities=17% Similarity=0.141 Sum_probs=254.1
Q ss_pred CCCCeEEeccCC-CCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNGS-FGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~~-~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
+.+..++|+.-. .++.++.+++++.++.... +++++ .......+..+++++.+++++|++ ++++++|+|+++
T Consensus 16 ~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~---~~~~~~g~t~a~ 91 (387)
T PRK09331 16 LEEEFINLDPIQRGGILTPEARKALIEYGDGY-SVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD---EARVTHGAREGK 91 (387)
T ss_pred ccccccccChhhcCCCCCHHHHHHHHHHHhcc-CCCcccccccccccChHHHHHHHHHHHHhCCC---cEEEeCCHHHHH
Confidence 345566776544 5699999999999988543 34432 223444557899999999999995 578899999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcc-ccCCC
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKG-KKDGK 189 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~-~~~~~ 189 (452)
..++.++ +++|++|+++.++|.+...++ ...|++++.++.+ .+.++.+ ++++++.+++. ....+
T Consensus 92 ~~al~~l--------~~~gd~Vlv~~~~h~s~~~~~----~~~G~~~~~v~~~--~~~~~~~d~~~l~~~l~~~~~~~~~ 157 (387)
T PRK09331 92 FAVMHSL--------CKKGDYVVLDGLAHYTSYVAA----ERAGLNVREVPKT--GYPEYKITPEAYAEKIEEVKEETGK 157 (387)
T ss_pred HHHHHHh--------cCCCCEEEECCCchHHHHHHH----HHcCCEEEEEeCc--cCcCCCcCHHHHHHHHHHhhhccCC
Confidence 9999887 489999999999999987654 4569999999642 1333445 88999888642 11124
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
++++|++++++|++|.+.|+++|+++|+++|+ ++++|++|+.|..+++...+++|++++|+|||+++|.|+|+++++++
T Consensus 158 ~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~-~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~ 236 (387)
T PRK09331 158 PPALALLTHVDGNYGNLADAKKVAKVAHEYGI-PFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEE 236 (387)
T ss_pred CCEEEEEECCCCCCcccccHHHHHHHHHHcCC-EEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHH
Confidence 78999999999999999999999999999999 89999999999999998888999999999999988888999999988
Q ss_pred ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 270 ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
+++. +.... ..+.... . ..+.++......+++.++++.+.+. .+ ..++..++++++++.|.+++|++++..
T Consensus 237 ~i~~-~~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~~aal~~~~~~---~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~ 307 (387)
T PRK09331 237 YADK-VFRTS--RKFGVKE-V-ELLGCTLRGAPLVTLMASFPHVVER---VK-RWDEEVKKARWFVDELEKIEGFKQLGE 307 (387)
T ss_pred HHhh-ccccc--CCCcccc-e-eeeceecCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHhcCCCEEEecc
Confidence 7765 21111 0011100 0 0111223333444455566555542 22 344557788899999999888887743
Q ss_pred cccccceEEEEcCCccc--cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 350 PEICAAMVMVGLPSRLR--VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 350 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
.....+++.+..|.... .....++.++.+.|.+ +||... . ......+|+.... +|.+
T Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~----~---------------~~~~~i~ri~~~g-~t~~ 366 (387)
T PRK09331 308 KPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKK-RGIHGI----K---------------PGATKEFKLSTYG-LTWE 366 (387)
T ss_pred CcCcCCeEEEeCCchhHHhhhccccchhHHHHHHH-cCceEE----c---------------cCCceEEEEEecc-CCHH
Confidence 22225676666551100 0112345679999976 599731 1 1223467777744 6999
Q ss_pred HHHHHHHHHHHHHhc
Q 012991 428 DYEKFRDAVILLVEE 442 (452)
Q Consensus 428 di~~l~~~l~~~~~~ 442 (452)
|+++++++|+++.++
T Consensus 367 di~~l~~aL~~i~~~ 381 (387)
T PRK09331 367 QVEYVADAFKEIAEK 381 (387)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999765
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=263.59 Aligned_cols=340 Identities=17% Similarity=0.116 Sum_probs=239.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCchh------hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecC-hhHHHHHHHHHh
Q 012991 46 GSFGSCPKSVLADQQKWQLKFLQQPDDF------YFNSLRKGILESRAAVKDLINADDVGEISLVDN-ATTAAAIVLQQI 118 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g-~t~a~~~~~~~l 118 (452)
+++.+.|++|++++..++.... ++++. ....+.+.++++|+.++++++++++++++||+| +|++++.++.++
T Consensus 5 pGp~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l 83 (355)
T cd00611 5 AGPAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNL 83 (355)
T ss_pred CCCCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence 4567788889999999886543 43331 124556889999999999999865678999987 999999999988
Q ss_pred hcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEec
Q 012991 119 GRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 119 ~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
.. ..+++++|++....|. +..++++.|++++.++.+... ..+...+..+..+ ++++++|.++|
T Consensus 84 ~~-----~~~~~~~i~~g~~~~~-----~~~~a~~~g~~~~~~~~~~~g-~~~~~~~~~~~~~------~~~~~lV~~~h 146 (355)
T cd00611 84 LG-----DKGTADYVVTGAWSAK-----AAKEAKRYGGVVVIVAAKEEG-KYTKIPDVETWDL------APDAAYVHYCS 146 (355)
T ss_pred CC-----CCCeEEEEECCHHHHH-----HHHHHHhcCCCcEEEeccccc-CCCCCCCHhhcCC------CCCCCEEEEeC
Confidence 31 1235566665333332 233468889999999652110 0101122222334 57899999999
Q ss_pred cCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCC
Q 012991 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHP 278 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~ 278 (452)
.+|.||...+ ++++.||+ +++||++|++|+.++|+++++ ++++|.||+ +||+|+|+++++++++++ ..+
T Consensus 147 ~~t~tG~~~~-----~i~~~~g~-~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~-lGP~G~g~l~~~~~~~~~--~~~ 215 (355)
T cd00611 147 NETIHGVEFD-----EVPDTGGV-PLVADMSSNILSRPIDVSKFG--VIYAGAQKN-LGPAGVTVVIVRKDLLGK--ARK 215 (355)
T ss_pred CcccccEEcc-----eecccCCC-eEEEEccccccCCCCCHHHhC--EEEeecccc-cCCCceEEEEECHHHHhh--ccc
Confidence 9999999843 45566999 899999999999999999875 466779996 689999999999988875 222
Q ss_pred ceeccCC-CCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCccccc-c
Q 012991 279 VVSHEFG-NGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPPEICA-A 355 (452)
Q Consensus 279 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~-~ 355 (452)
.....+. ........+.+||++..++++.++++++.+. +|++++.++.+++++++++.|.+++|+. ...++..++ .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~-gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~ 294 (355)
T cd00611 216 ITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQ-GGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRM 294 (355)
T ss_pred CCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCce
Confidence 2110010 0001112236899999999999999999863 3699999999999999999999997752 222222234 5
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDA 435 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~ 435 (452)
++.|.++.. ..+ .++.+.+.+ .|+.++.++. ..+.+|+|+.+|||.+||++++++
T Consensus 295 vvsf~~~~~-----~l~-~~~~~~~~r-~G~~~~~~~~------------------~~g~vR~S~~~~nt~edi~~l~~a 349 (355)
T cd00611 295 NVPFRLGKE-----ELE-KEFLKEAEA-AGMIGLKGHR------------------SVGGIRASIYNALSLEGVQALADF 349 (355)
T ss_pred EEEEEcCCh-----hhh-HHHHHHHHH-CCCcccCCCc------------------ccCeEEEEccCCCCHHHHHHHHHH
Confidence 588887621 112 344444433 5887654432 136899999999999999999999
Q ss_pred HHHHH
Q 012991 436 VILLV 440 (452)
Q Consensus 436 l~~~~ 440 (452)
|+++.
T Consensus 350 l~~~~ 354 (355)
T cd00611 350 MKEFQ 354 (355)
T ss_pred HHHHh
Confidence 99865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=259.14 Aligned_cols=334 Identities=17% Similarity=0.115 Sum_probs=244.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCch------hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecC-hhHHHHHHHHHhhccc
Q 012991 50 SCPKSVLADQQKWQLKFLQQPDD------FYFNSLRKGILESRAAVKDLINADDVGEISLVDN-ATTAAAIVLQQIGRGF 122 (452)
Q Consensus 50 ~~p~~v~e~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g-~t~a~~~~~~~l~~~~ 122 (452)
..|.+|++++.+++..+. +.+. +....+.+.++++++.++++++.++..+++|++| ||.|++.++.++
T Consensus 2 ~~p~~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl---- 76 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNL---- 76 (349)
T ss_pred CCCHHHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc----
Confidence 578899999999987554 3222 2335566899999999999999853457888866 999999999987
Q ss_pred ccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCC
Q 012991 123 TEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITS 201 (452)
Q Consensus 123 ~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n 201 (452)
+.+++++++......+ ..|..+|++.|. +..+..+...+....+ +++++ + ++++++|.++|.+|
T Consensus 77 ----~~~~~~~l~i~~G~fg--~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~v~~th~ET 141 (349)
T TIGR01364 77 ----LAEGKVADYIVTGAWS--KKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--I------SEDAAYVHYCANET 141 (349)
T ss_pred ----CCCCCeEEEEECCHHH--HHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--C------CCCCCEEEEcCCCC
Confidence 4678888876555544 345666899998 7776532000000111 33333 2 46799999999999
Q ss_pred CCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCcee
Q 012991 202 MPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVS 281 (452)
Q Consensus 202 ~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~ 281 (452)
+||+..| ++++.+++ +++||+++++|+.++|++.+ |++++|+||+ +||+|+|+++++++++++ + .+...
T Consensus 142 stGv~~~-----~l~~~~~~-l~iVDavss~g~~~id~~~~--d~~~~ssqK~-lgP~Glg~l~~s~~~~~~-~-~~~~~ 210 (349)
T TIGR01364 142 IHGVEFR-----ELPDVKNA-PLVADMSSNILSRPIDVSKF--GLIYAGAQKN-IGPAGLTVVIVRKDLLGR-A-SRITP 210 (349)
T ss_pred cccEecc-----eecccCCC-eEEEEccccccCccCCHHHc--cEEEEecccc-cCCCceEEEEECHHHHhh-c-ccCCC
Confidence 9999887 67777899 89999999999999999975 5999999997 579999999999998875 2 22211
Q ss_pred ccCCC-C-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCC-Cccccc-ceE
Q 012991 282 HEFGN-G-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGS-PPEICA-AMV 357 (452)
Q Consensus 282 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~-~~~ 357 (452)
.+.. . .......++||++..++++.++++++.+. +|++++.++.+.+++++++.|++++|+.... ++..++ .++
T Consensus 211 -~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~-gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~ 288 (349)
T TIGR01364 211 -SMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQ-GGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNV 288 (349)
T ss_pred -CcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEE
Confidence 1110 0 01112345899999999999999999862 3699999999999999999999997764442 222234 568
Q ss_pred EEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 358 MVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
.|.++.. .. ..++...+.+ .|++++.++. ..+.+|+|+.++||.+||++++++|+
T Consensus 289 sf~~~~~-----~~-~~~~~~~~~~-~Gi~~~~~~~------------------~~g~vRvS~~~~nt~edid~l~~al~ 343 (349)
T TIGR01364 289 VFTLGNE-----EL-EKRFLKEAEE-RGLVSLKGHR------------------SVGGMRASIYNAMPLEGVQALVDFMK 343 (349)
T ss_pred EEecCCh-----hH-hHHHHHHHHH-CCCcccCCcc------------------ccCeeEEECcCCCCHHHHHHHHHHHH
Confidence 8887621 22 2456566654 5997654433 13689999999999999999999999
Q ss_pred HHHh
Q 012991 438 LLVE 441 (452)
Q Consensus 438 ~~~~ 441 (452)
++.+
T Consensus 344 ~~~~ 347 (349)
T TIGR01364 344 EFQK 347 (349)
T ss_pred HHHH
Confidence 9775
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-31 Score=257.78 Aligned_cols=336 Identities=18% Similarity=0.153 Sum_probs=245.4
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 121 (452)
+|+...+.+.|. +.+++.++......++... ....+..+++++++++++|++ .+.+++++|||+++..++.++...
T Consensus 24 ~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~~-~~~~~~~~ggt~a~~~a~~~~~~~ 99 (371)
T PRK13520 24 ILSSMCTEPHPI-ARKAHEMFLETNLGDPGLF--PGTAKLEEEAVEMLGELLHLP-DAYGYITSGGTEANIQAVRAARNL 99 (371)
T ss_pred eeeeeecCchHH-HHHHHHHHHhcCCCCcccC--ccHHHHHHHHHHHHHHHhCCC-CCCeEEecCcHHHHHHHHHHHHhh
Confidence 377655555555 7888888776533333222 234566789999999999996 567899999999999888765311
Q ss_pred cccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 122 ~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
..+++++|++++++|.+.... ++..|.+++.++. +.++.+ +++|++++ .+++++|++++++
T Consensus 100 ----~~~~~~~vl~~~~~h~s~~~~----~~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~~~~vi~~~~~ 161 (371)
T PRK13520 100 ----AKAEKPNIVVPESAHFSFDKA----ADMLGVELRRAPL----DDDYRVDVKAVEDLI------DDNTIGIVGIAGT 161 (371)
T ss_pred ----ccCCCceEEecCcchHHHHHH----HHHcCceEEEecC----CCCCcCCHHHHHHHH------hhCCEEEEEEcCC
Confidence 113578999999999885443 4556999999954 333444 89999999 4567788888889
Q ss_pred CCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-------ccccccCccEEEEcCcccCcCCCCcEEEEEecC-ccc
Q 012991 201 SMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK-------IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS-ILS 272 (452)
Q Consensus 201 n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~~ 272 (452)
|++|.+.|+++|.++|+++|+ ++++|++|+.+..+ ++....++|++++|+|||..+|.++|+++++++ ++.
T Consensus 162 ~~tG~~~~l~~I~~l~~~~g~-~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~ 240 (371)
T PRK13520 162 TELGQVDPIPELSKIALENGI-FLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLD 240 (371)
T ss_pred cCCcccCCHHHHHHHHHHcCC-CEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHH
Confidence 999999999999999999999 69999999866533 334445789999999998776777787776544 444
Q ss_pred cCCC--CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 012991 273 SDMH--HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP 350 (452)
Q Consensus 273 ~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 350 (452)
. +. .++. .+.. +..+.|+++...++++.++++.+... |++++.++..++++++.+.|.++ ++++..++
T Consensus 241 ~-l~~~~~~~---~~~~---~~~~~gt~~~~~~~~~~~al~~l~~~--g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 310 (371)
T PRK13520 241 A-LAVDTPYL---TSKK---QATLTGTRSGAGVAATYAVMKYLGRE--GYRKVVERCMENTRWLAEELKER-GFEPVIEP 310 (371)
T ss_pred h-hcccCccc---cCCC---CcceEeeccChHHHHHHHHHhhhcHh--HHHHHHHHHHHHHHHHHHHHHhC-CCEEecCC
Confidence 3 21 1211 1110 12234666666777788888877643 88889999999999999999987 77633232
Q ss_pred ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHH
Q 012991 351 EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~ 430 (452)
. .+++.+.++ +..++.+.|.++ ||.+... ..++++|+|++.++|++||+
T Consensus 311 ~--~~~v~~~~~---------~~~~v~~~L~~~-gi~v~~~-------------------~~~~~iRis~~~~~t~edi~ 359 (371)
T PRK13520 311 V--LNIVAFDDP---------NPDEVREKLRER-GWRVSVT-------------------RCPEALRIVCMPHVTREHIE 359 (371)
T ss_pred C--ceEEEEecC---------CHHHHHHHHHHC-CceeccC-------------------CCCCEEEEEEECCCCHHHHH
Confidence 2 557777764 456888999765 9988532 12368999999999999999
Q ss_pred HHHHHHHHHHh
Q 012991 431 KFRDAVILLVE 441 (452)
Q Consensus 431 ~l~~~l~~~~~ 441 (452)
++++.|+++++
T Consensus 360 ~~~~~l~~~~~ 370 (371)
T PRK13520 360 NFLEDLKEVKK 370 (371)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=258.78 Aligned_cols=342 Identities=14% Similarity=0.092 Sum_probs=246.6
Q ss_pred eccCCCCCCcHHHHHHHHHHHHHHhc-----CCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe-cChhHHHHHHHH
Q 012991 43 INNGSFGSCPKSVLADQQKWQLKFLQ-----QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLV-DNATTAAAIVLQ 116 (452)
Q Consensus 43 l~~~~~~~~p~~v~e~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t-~g~t~a~~~~~~ 116 (452)
|=++++...|++|++++...+.++.. .+..+....+.+.++++++.++++++.++..+++++ ++||.|++.++.
T Consensus 6 l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~ 85 (360)
T PRK05355 6 NFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPM 85 (360)
T ss_pred eccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHH
Confidence 33466788888899999988754321 112234466678999999999999998534556655 678899999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHH-HHhccccCCCceEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKK-GIEKGKKDGKMIRLA 194 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~-~i~~~~~~~~~~~lv 194 (452)
++ +.+|+++++......+ ..|..+|++.|.. ..+..++ ..+.. ..++++ .+ .+++++|
T Consensus 86 nl--------~~~g~~~l~i~~G~fg--~r~~~~a~~~g~~-~~~~~~~---~~g~~~~~~~~~~~l------~~~~~~V 145 (360)
T PRK05355 86 NL--------LGGGKKADYVDTGSWS--KKAIKEAKKYGEV-NVAASSE---DDGFTYIPPLDEWQL------SDDAAYV 145 (360)
T ss_pred hc--------CCCCCeEEEEECCHHH--HHHHHHHHHhCCc-eEEeccc---ccCCCCCCChhhccC------CCCCCEE
Confidence 87 5788887776544433 3445568888865 5553321 01111 233333 56 4578999
Q ss_pred EEeccCCCCcccc-cHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCcccc
Q 012991 195 IIDHITSMPCVVI-PVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSS 273 (452)
Q Consensus 195 ~~~~~~n~tG~~~-~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~ 273 (452)
.++|.+|+||... |+++| +|+ +++||+++++|+.++|++.+ |++++|.||+ +||+|+|+++++++++++
T Consensus 146 ~~th~eTstGv~~~~i~~i------~g~-l~vVDavss~g~~~idv~~~--d~~~~ssqK~-lgP~Glg~l~~s~~~l~~ 215 (360)
T PRK05355 146 HYTSNETIDGTEFHELPDT------GDV-PLVADMSSDILSRPIDVSKF--GLIYAGAQKN-IGPAGLTIVIVREDLLGR 215 (360)
T ss_pred EEccCCCcceEecCccccc------CCC-cEEEEcCccccCccCCHHHc--cEEEEecccc-ccCCceEEEEECHHHHhh
Confidence 9999999999998 77766 899 89999999999999999976 5999999997 579999999999999876
Q ss_pred CCCCCceeccCCCC-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc
Q 012991 274 DMHHPVVSHEFGNG-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI 352 (452)
Q Consensus 274 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 352 (452)
+ .+.....+... .......++||++..++++.++++++.+. +|++++.++.+++++++++.|++++.+....++..
T Consensus 216 -~-~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~-gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~ 292 (360)
T PRK05355 216 -A-LPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQ-GGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPED 292 (360)
T ss_pred -c-ccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhh
Confidence 2 23111000000 00122346899999999999999999862 37999999999999999999999853333233222
Q ss_pred cc-ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHH
Q 012991 353 CA-AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 353 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 431 (452)
++ .++.|.++ +.....++...+.+ .||.++.++. ..+.+|+|+.+|||.+||++
T Consensus 293 rs~~v~sf~~~------~~~~~~~~~~~~~~-~Gi~~~~~~~------------------~~g~vRiS~~~~nt~eei~~ 347 (360)
T PRK05355 293 RSRMNVPFTLA------DEELDKKFLAEAKA-AGLVGLKGHR------------------SVGGMRASIYNAMPLEGVQA 347 (360)
T ss_pred cCCcEEEEEcC------ChHHHHHHHHHHHH-CCCcccCCCC------------------ccCcEEEECCCCCCHHHHHH
Confidence 34 67888887 23333566666655 5998743332 13689999999999999999
Q ss_pred HHHHHHHHHhc
Q 012991 432 FRDAVILLVEE 442 (452)
Q Consensus 432 l~~~l~~~~~~ 442 (452)
|+++|++++..
T Consensus 348 l~~~l~~~~~~ 358 (360)
T PRK05355 348 LVDFMKEFERR 358 (360)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=252.06 Aligned_cols=342 Identities=16% Similarity=0.189 Sum_probs=250.4
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC----CC-CCC-cEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----AD-DVG-EISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~~-~i~~t~g~t~a 110 (452)
..+++|+.|.+. +.|+.+.+++.+.+.... .. |.+.++..++|+++++++. ++ +++ +|++|+|+++|
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~----~~--Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~a 101 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGG----TH--YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEA 101 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhccc----CC--CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHH
Confidence 579999999987 778889999988775421 11 2245566777777776654 22 244 49999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+..++.++ +++||+|++++|.|+++...+.. .|+++..+++..+. ++..+ .++|++++ ++
T Consensus 102 l~~~~~a~--------~~pGDeVlip~P~Y~~y~~~~~~----~gg~~v~v~l~~~~-~~f~~d~~~l~~~i------~~ 162 (393)
T COG0436 102 LFLAFLAL--------LNPGDEVLIPDPGYPSYEAAVKL----AGGKPVPVPLDEEE-NGFKPDLEDLEAAI------TP 162 (393)
T ss_pred HHHHHHHh--------cCCCCEEEEeCCCCcCHHHHHHh----cCCEEEEEeCCcCc-cCCcCCHHHHHhhc------Cc
Confidence 99999987 69999999999999997666544 59999999753221 34455 89999999 67
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cc---cccc-cCccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KI---DVKE-IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~---~~~~-~~~d~~~~s~~K~l~g~ 258 (452)
+||+|++++|+||||.+++ +++|+++|++|++ ++|.|+++.--.. +. .... ...-+.+.|+||. +++
T Consensus 163 ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i-~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~-~~m 240 (393)
T COG0436 163 KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDI-IIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKT-YGM 240 (393)
T ss_pred cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCe-EEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccc-ccc
Confidence 9999999999999999997 6688999999999 7999999764222 11 1111 1234677799996 889
Q ss_pred CC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 259 ~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
+| +|+++++ +++++. + ... .......++...+.+..++++.... ....+..++..+++++.+.
T Consensus 241 tGwRvG~~v~~~~~l~~~-~-~~~-----------~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~ 306 (393)
T COG0436 241 TGWRIGWVVGPPEELIAA-L-RKL-----------KSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLV 306 (393)
T ss_pred cccceeEeecChHHHHHH-H-HHH-----------HHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHH
Confidence 88 8999888 555554 1 101 1111123444555555566654421 1135666778899999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.+++|+.+..++.. .++++..++. ..++.+++..|.++.||.+.++..+... ...++
T Consensus 307 ~~l~~~~g~~~~~~p~G-a~Y~~~~i~~------~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~-------------~g~~~ 366 (393)
T COG0436 307 EALNEIGGLSVVKPPEG-AFYLFPKIPE------LLDSEEFAKKLLEEAGVAVVPGSGFGEP-------------PGEGY 366 (393)
T ss_pred HHHHhcCCeeeccCCCe-eEEEEeecCC------CCCHHHHHHHHHHhCCEEEecccccCCC-------------CCCCe
Confidence 99999988988874432 7788888862 3578899999999889999887776431 24689
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|+|+.. +.++++..++++++.++.
T Consensus 367 vRis~~~--~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 367 VRLSLAT--SEETLEEALRRLARFLAE 391 (393)
T ss_pred EEEEEec--CHHHHHHHHHHHHHHHHh
Confidence 9999986 668899999999988764
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=259.71 Aligned_cols=353 Identities=15% Similarity=0.113 Sum_probs=251.0
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCchhh--hhhhhHHHH-HHHHHHHhHhCCCCCCcEEEe---cChh
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDDFY--FNSLRKGIL-ESRAAVKDLINADDVGEISLV---DNAT 108 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~~~--~~~~~~~~~-~~~~~la~~~~~~~~~~i~~t---~g~t 108 (452)
++..+.|- ++-...++.|++++...+.... ++|++.+ +....+.++ .+++.++++||++ ++++.++ +||+
T Consensus 33 ~~~~l~l~-~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~-~~~~~~~~~~~sgt 110 (452)
T PTZ00094 33 QIEGLELI-ASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLD-PEEWGVNVQPYSGS 110 (452)
T ss_pred HHcCeeEe-cccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCC-cccceeecCCCchH
Confidence 35677776 3455677779999998887655 6666642 233334455 5899999999996 6777676 7999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh----cC--cEEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR----AG--GSVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~----~g--~~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
+|+..++.++ +++||+|+++..+|.++...+..+.+. .+ .++..+ +.+.++.+ +++|++.+
T Consensus 111 ~an~~v~~al--------~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~----~~~~~g~id~~~L~~~l 178 (452)
T PTZ00094 111 PANFAVYTAL--------LQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPY----QVNEKGLIDYDKLEELA 178 (452)
T ss_pred HHHHHHHHHh--------cCCCCEEEecccccCCcccccccccccccccceeeeeeeec----ccCCCCCcCHHHHHHHH
Confidence 9999999987 478999999999998876665332111 11 222233 33444566 89999999
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccc---cCccEEEEcCcccCcCC
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE---IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~---~~~d~~~~s~~K~l~g~ 258 (452)
++ .++++|++. ++.+|...|+++|.++|+++|+ ++++|++|++|.++.+... .++|++++|+|||++||
T Consensus 179 ~~-----~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga-~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP 250 (452)
T PTZ00094 179 KA-----FRPKLIIAG--ASAYPRDIDYKRFREICDSVGA-YLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGP 250 (452)
T ss_pred HH-----hCCCEEEEe--CCCCCCccCHHHHHHHHHHcCC-EEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCC
Confidence 53 356777764 3458999999999999999999 8999999999998665422 26899999999999999
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
.| |+++++++..+. + .+.... . ....+.|+++...++++.++++++... +.+.+.+++.++++++.+.|
T Consensus 251 ~G-g~l~~~~~~~~~-l-~~~~~~---~---~~p~~~G~~~~~~iaal~~al~~~~~~--~~~~~~~~i~~l~~~l~~~L 319 (452)
T PTZ00094 251 RS-GLIFYRKKVKPD-I-ENKINE---A---VFPGLQGGPHNHQIAAIAVQLKEVQSP--EWKEYAKQVLKNAKALAAAL 319 (452)
T ss_pred Cc-eEEEEecccchH-H-HHhhcc---c---cCCCCCCCchHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHHH
Confidence 98 888888765442 1 111000 0 000123677777888999999998754 78889999999999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-cccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI-HYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
.+. |+.+..+... ..++.+.+.. .+.+...+...|.+ +||.+.. +..+... ...++++|
T Consensus 320 ~~~-g~~v~~~~~~-~~~~~v~~~~-----~~~~~~~~~~~L~~-~gI~vs~~~~p~~~~------------~~~~~~vR 379 (452)
T PTZ00094 320 EKR-GYDLVTGGTD-NHLVLVDLRP-----FGITGSKMEKLLDA-VNISVNKNTIPGDKS------------ALNPSGVR 379 (452)
T ss_pred HhC-CcEEecCCCC-CceEeecCCc-----CCCCHHHHHHHHHH-CCcEEecccCCCCCc------------CCCCCeEE
Confidence 886 7776543211 2233333321 24567788888854 6999942 2222110 23457999
Q ss_pred ecccccCC----HHHHHHHHHHHHHHHhc
Q 012991 418 ISHQVYNT----LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 418 is~~~~~t----~~di~~l~~~l~~~~~~ 442 (452)
+|++.+|| ++||+++++.|++++..
T Consensus 380 is~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 380 LGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred ECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999987 99999999999999974
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=247.10 Aligned_cols=342 Identities=13% Similarity=0.134 Sum_probs=239.5
Q ss_pred CCCCeEEeccCCC-C-CCcHHHHHHHHHHHHHH-hcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGSF-G-SCPKSVLADQQKWQLKF-LQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.++.+++|..+.+ + ..++.+.+++.+.+..+ .+++.+.+..+..+...++++.+++++|.+ ++++++||++|+.
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~---~~ii~~~~~~a~~ 112 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTE---DTILYASCFDANG 112 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC---cEEEECchHHHHH
Confidence 5678899988875 4 34666888888887664 233333222344667799999999999984 5677788999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceE
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
.++.++ +++||+|++++++|+++..++.. .+.+...+ +..+ ++++++.+++......+++
T Consensus 113 ~~~~~l--------~~~gd~vi~~~~~~~s~~~~~~~----~~~~~~~~----~~~d----~~~l~~~i~~~~~~~~~~~ 172 (393)
T TIGR01822 113 GLFETL--------LGAEDAIISDALNHASIIDGVRL----CKAKRYRY----ANND----MADLEAQLKEARAAGARHR 172 (393)
T ss_pred HHHHHh--------CCCCCEEEEeccccHHHHHHHHh----cCCceEEe----CCCC----HHHHHHHHHhhhhcCCCce
Confidence 888876 58999999999999998776643 35444443 2222 5777777753211123789
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---------cccccCccEEEEcCcccCcCCCCcEE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
+|++++++|++|.+.|+++|+++|++||+ ++|+|++|+.|.... +.. .++|++++|+||++.|+. .|+
T Consensus 173 ~v~~~~v~~~tG~~~~l~~i~~la~~~~~-~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r-~G~ 249 (393)
T TIGR01822 173 LIATDGVFSMDGVIAPLDEICDLADKYDA-LVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGAS-GGF 249 (393)
T ss_pred EEEEeCCccCCCCcCCHHHHHHHHHHcCC-EEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCCC-cEE
Confidence 99999999999999999999999999999 799999998775422 111 257999999999977666 499
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
+++++++++. +. .... ...+.++.+...+.+..++++.+. +.+.++++++++++++.+.|.+. +
T Consensus 250 ~~~~~~~~~~-l~-~~~~---------~~~~~~~~~~~~~~a~~~al~~~~----~~~~~~~~~~~~~~~l~~~L~~~-g 313 (393)
T TIGR01822 250 TTARKEVVEL-LR-QRSR---------PYLFSNSLPPAVVGASIKVLEMLE----ASNELRDRLWANTRYFRERMEAA-G 313 (393)
T ss_pred EEeCHHHHHH-HH-HhCc---------cceecCCCCHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHc-C
Confidence 9888877764 21 1100 001113333333344455565543 35677888999999999999876 7
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
+.+..+. +.++.+.++ +..+..++++.|.++ ||.+.....+.. ......+|++++.+
T Consensus 314 ~~~~~~~---~~~~~i~~~------~~~~~~~l~~~L~~~-gI~v~~~~~~~~-------------~~~~~~iRis~~~~ 370 (393)
T TIGR01822 314 FDIKPAD---HPIIPVMLY------DAVLAQRFARRLLEE-GIYVTGFFYPVV-------------PKGQARIRVQISAA 370 (393)
T ss_pred CCCCCCC---CCEEEEEeC------CHHHHHHHHHHHHHC-CeeEeeeCCCCC-------------CCCCceEEEEECCC
Confidence 7665332 345555554 234677899999775 999863222111 12235799999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 012991 424 NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~ 442 (452)
+|++||++++++|+++.++
T Consensus 371 ~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 371 HTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=249.99 Aligned_cols=334 Identities=17% Similarity=0.138 Sum_probs=236.3
Q ss_pred eccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccc
Q 012991 43 INNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF 122 (452)
Q Consensus 43 l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~ 122 (452)
|.+.+..+.|. +.+++..+.....+++.. + ....+..+++++.+++++|++ ++++++++|+++++..++.++....
T Consensus 25 ~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~g~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 100 (373)
T TIGR03812 25 LGSMCTNPHPI-AVKAYDMFIETNLGDPGL-F-PGTKKIEEEVVGSLGNLLHLP-DAYGYIVSGGTEANIQAVRAAKNLA 100 (373)
T ss_pred EEEEeCCchHH-HHHHHHHHhhcCCCCccc-C-ccHHHHHHHHHHHHHHHhCCC-CCCeEEeccHHHHHHHHHHHHHHHH
Confidence 33333445554 577777765443333332 2 234567789999999999996 5788899999999888876653100
Q ss_pred ccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCC
Q 012991 123 TEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITS 201 (452)
Q Consensus 123 ~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n 201 (452)
. .-++|++|++++++|.+.... ++..|++++.++. +.++.+ ++++++.++ +++..+++.+++|
T Consensus 101 ~--~~~~g~~vl~~~~~h~~~~~~----~~~~G~~~~~v~~----~~~~~~d~~~l~~~l~------~~~~~vv~~~~~~ 164 (373)
T TIGR03812 101 R--EEKRTPNIIVPESAHFSFEKA----AEMLGLELRYAPL----DEDYTVDVKDVEDLID------DNTIGIVGIAGTT 164 (373)
T ss_pred h--ccCCCcEEEECCcchHHHHHH----HHHcCCeEEEEee----CCCCCcCHHHHHHHHh------hCcEEEEEECCCC
Confidence 0 014678999999999885444 4557999999954 333444 899999884 4554445445789
Q ss_pred CCcccccHHHHHHHHHHcCCCEEEEecccccCCc----------cccccccCccEEEEcCcccCcCCCCcEEEE-EecCc
Q 012991 202 MPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI----------KIDVKEIGADFYVSNLHKWFFCPPSVAFLY-CRKSI 270 (452)
Q Consensus 202 ~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~----------~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~-~~~~~ 270 (452)
++|.+.|+++|.++|+++|+ ++|+|++|+.+.. .+++...++|++++|+|||..+|.+.|+++ .+++.
T Consensus 165 ~tG~~~~~~~i~~l~~~~~~-~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~ 243 (373)
T TIGR03812 165 ELGQIDDIEELSKIALENGI-YLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSY 243 (373)
T ss_pred CCCccCCHHHHHHHHHHcCC-eEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHH
Confidence 99999999999999999999 7999999975543 344444578999999999877776666555 45665
Q ss_pred cccCCC--CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q 012991 271 LSSDMH--HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGS 348 (452)
Q Consensus 271 ~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 348 (452)
++. +. .++. .+. .+..+.|+++...+.++.++++++.+. |++.+.++..++++++++.|.++ ++....
T Consensus 244 ~~~-l~~~~~~~---~~~---~~~~~~gt~~~~~~~~~~~~l~~l~~~--g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 313 (373)
T TIGR03812 244 LKY-LSVDAPYL---TVK---KQATITGTRSGASAAATYAVIKYLGRE--GYRKIVAECMENTRYLVEELKKI-GFEPVI 313 (373)
T ss_pred Hhh-hcccCccc---CCC---CCcceEeechhHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHHhC-CCeEEc
Confidence 553 21 1111 111 112234677777788888888887654 88999999999999999999987 554222
Q ss_pred CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHH
Q 012991 349 PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~d 428 (452)
++ ..+++.|.++ +..++.+.|.++ ||.++.. ..++++|++++.++|++|
T Consensus 314 ~~--~~~~v~~~~~---------~~~~v~~~L~~~-gi~v~~~-------------------~~~~~iRis~~~~~t~ed 362 (373)
T TIGR03812 314 EP--VLNIVAFEVD---------DPEEVRKKLRDR-GWYVSVT-------------------RCPKALRIVVMPHVTREH 362 (373)
T ss_pred CC--CceEEEEEeC---------CHHHHHHHHHHC-CceeccC-------------------CCCCEEEEEEECCCCHHH
Confidence 22 2567778775 235788999775 9998532 124689999999999999
Q ss_pred HHHHHHHHHH
Q 012991 429 YEKFRDAVIL 438 (452)
Q Consensus 429 i~~l~~~l~~ 438 (452)
+++++++|++
T Consensus 363 id~l~~~L~~ 372 (373)
T TIGR03812 363 IEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHhh
Confidence 9999999976
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=250.73 Aligned_cols=352 Identities=18% Similarity=0.174 Sum_probs=234.6
Q ss_pred CCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 36 HQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 36 ~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
.+.++++|+.+.++..++.+.++..........+.... ...+..+..+++++++++++|++ .++++++++|+++.+.
T Consensus 18 ~~~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~-~~~v~~~~~g~~~~~~ 96 (398)
T cd00613 18 LDQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMD-VANASLQDEATAAAEA 96 (398)
T ss_pred cccCcccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC-ccceeccCchHHHHHH
Confidence 45677999999999655555555333221100111000 02345577889999999999985 5677777766655444
Q ss_pred HHHHhhcccccCCCCC--CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 114 VLQQIGRGFTEGRFHR--NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~--g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
++.++. ..+ ||+|+++++.|+++...+..+.+..|.+++.++. ++++.+ ++++++++ +++
T Consensus 97 ~~~~~~-------~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~ 159 (398)
T cd00613 97 AGLAAI-------RAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPS----DEGGTVDLEALKEEV------SEE 159 (398)
T ss_pred HHHHHH-------hcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEecc----CCCCCcCHHHHHHhc------CCC
Confidence 444332 244 8999999999999988887765555689988854 333344 88999988 678
Q ss_pred eEEEEEeccCCCCcccccH-HHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCC-----CCcEEE
Q 012991 191 IRLAIIDHITSMPCVVIPV-RKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCP-----PSVAFL 264 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l-~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~-----~G~G~l 264 (452)
+++|++++++ ++|.+.|+ ++|+++|+++|+ ++|+|++|+.+....+...+++|++++|+|||+ +| +|+|++
T Consensus 160 t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~-~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l 236 (398)
T cd00613 160 VAALMVQYPN-TLGVFEDLIKEIADIAHSAGA-LVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFF 236 (398)
T ss_pred eEEEEEECCC-CCceecchHHHHHHHHHhcCC-EEEEEeccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCceeEE
Confidence 9999999985 79999985 999999999999 799999988776666666678999999999986 43 557899
Q ss_pred EEecCccccCCCCCceeccCCC-----Ccc--------cccccccccCcc-----ccccHHHHHHHHHHhhcCHHHHHHH
Q 012991 265 YCRKSILSSDMHHPVVSHEFGN-----GLP--------IESAWIGTRDYS-----AQLVIPSAVTFVSRFEGGIDGIMQR 326 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~-----~~~~~~~al~~~~~~~~g~~~~~~~ 326 (452)
++++++++. + .+....+... ... ....+.++++.. ...+...++..+.. .|+++++++
T Consensus 237 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~--~g~~~~~~~ 312 (398)
T cd00613 237 AVKKELVRF-L-PGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGP--EGLKEIAER 312 (398)
T ss_pred EEhhhhHhh-C-CCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCH--HHHHHHHHH
Confidence 998877764 2 2221100000 000 000112333222 11122223333333 378889999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGAR 406 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~ 406 (452)
.+++++++++.|.++++... +.......+++.++.. .+.++.++++.|.++ ||.+.... .
T Consensus 313 ~~~~~~~l~~~L~~~~~~~~--~~~~~~~~v~~~~~~~----~~~~~~~~~~~L~~~-gi~~~~~~-~------------ 372 (398)
T cd00613 313 AHLNANYLAKRLKEVGGVLP--FNGPFFHEFVLRLPPL----YGIRAEDLAKALIDG-GFHAPTMY-L------------ 372 (398)
T ss_pred HHHHHHHHHHHHHhcCCccc--CCCCeeEEEEEEcCCc----chHHHHHHHHhhhhc-Cccccccc-c------------
Confidence 99999999999998754432 2222244566776510 034677899999764 99864321 1
Q ss_pred CCCCCccceEEecccccCCHHHHHHHHHHH
Q 012991 407 DKDGIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 407 ~~~~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
...+.+|++++.++|++|||+++++|
T Consensus 373 ----~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 373 ----PVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred ----CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 13478999999999999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=252.19 Aligned_cols=296 Identities=14% Similarity=0.087 Sum_probs=219.9
Q ss_pred hhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHHHHHHHHHhhccccc----CCCCC--CCEEEEeCCcchhHHHHHH
Q 012991 76 NSLRKGILESRAAVKDLINAD-DVGEISLVDNATTAAAIVLQQIGRGFTE----GRFHR--NDTVLMLHCAFQAVKKSIQ 148 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~----~~~~~--g~~Vl~~~~~~~s~~~~~~ 148 (452)
....++.+++++++++++|.+ +.++++||+|||+|+.+++.++...+.. ....+ +..|++++++|.++..++.
T Consensus 34 ~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~ 113 (345)
T cd06450 34 PAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAA 113 (345)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHH
Confidence 345667788899999999985 3568999999999999999887432110 00012 3478888999998766654
Q ss_pred HHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEe
Q 012991 149 AYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 149 ~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD 227 (452)
. .|.+++.+++ ++++.+ +++|++.+++....+.++++|++++++|++|.+.|+++|+++|+++|+ ++|+|
T Consensus 114 ~----~g~~~~~v~~----~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~-~l~vD 184 (345)
T cd06450 114 Y----LDVKVRLVPV----DEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDL-WLHVD 184 (345)
T ss_pred H----HhcCeEEeee----CCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCC-eEEEe
Confidence 4 4889999854 333445 899999886432223478999999999999999999999999999999 69999
Q ss_pred cccccCCccccccc------cCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCcc
Q 012991 228 AAHAMGSIKIDVKE------IGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYS 301 (452)
Q Consensus 228 ~a~~~g~~~~~~~~------~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (452)
++++.+..+.+... .++|++++|+|||+++|.|+|+++++
T Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~---------------------------------- 230 (345)
T cd06450 185 AAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR---------------------------------- 230 (345)
T ss_pred chhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH----------------------------------
Confidence 99998876543221 26899999999998899998887654
Q ss_pred ccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHh
Q 012991 302 AQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLR 381 (452)
Q Consensus 302 ~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 381 (452)
.+++.++++.+... |+++++++..++++++.+.|.+++++.+..++. .+++.|.++... ..+.+..++.+.|.
T Consensus 231 -~~~~~~~l~~l~~~--g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~iv~f~~~~~~--~~~~~~~~i~~~L~ 303 (345)
T cd06450 231 -ALKLWATLRRFGRD--GYGEHIDRIVDLAKYLAELIRADPGFELLGEPN--LSLVCFRLKPSV--KLDELNYDLSDRLN 303 (345)
T ss_pred -HHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc--eeEEEEEECCcc--hhhHHHHHHHHHHH
Confidence 33445567776654 889999999999999999999988877665443 668888876200 00356678999997
Q ss_pred hhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHH
Q 012991 382 VRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVIL 438 (452)
Q Consensus 382 ~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~ 438 (452)
++ |+.+...... ..++++|++++.+ +|.+|+++++++|++
T Consensus 304 ~~-g~~~~~~~~~----------------~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 304 ER-GGWHVPATTL----------------GGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred hc-CCEEEEeeEE----------------CCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 65 5544322221 1246899999976 599999999999976
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=250.08 Aligned_cols=338 Identities=14% Similarity=0.131 Sum_probs=237.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe-cChhHHHHHHHHHhhcccccC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLV-DNATTAAAIVLQQIGRGFTEG 125 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t-~g~t~a~~~~~~~l~~~~~~~ 125 (452)
++...|+.|++++....... -+..+.+..+.+.++++++.+++++++++..+|+|+ +|||.+++.++.++.
T Consensus 10 GP~~~~~~v~~a~~~~~~~~--~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~------ 81 (361)
T TIGR01366 10 GPSKVRLEQLQALTTTAASL--FGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI------ 81 (361)
T ss_pred CCcCCCHHHHHHHHhcCccc--cccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc------
Confidence 35556666888866321000 012345567789999999999999999644578886 569999999999772
Q ss_pred CCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 126 RFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
. ++.+++...+|.+....+..++...+ ++..++.++. +.++..+ ++++++|.++|.+|.||.
T Consensus 82 --~-~~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~--------~~~~~~~------~~~~~lV~~~h~et~tG~ 143 (361)
T TIGR01366 82 --E-KKSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPG--------SAPEPQA------DPGVDVIAWAHNETSTGV 143 (361)
T ss_pred --c-ccccEEecCHHHHHHHHHHHhhhccC-CceEEecCCC--------CCCCCcc------CCCCCEEEEcccCCccce
Confidence 2 24445556777665444433222233 6677754321 1122223 578999999999999999
Q ss_pred cccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceec---
Q 012991 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSH--- 282 (452)
Q Consensus 206 ~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~--- 282 (452)
+.|+++| +|++|+ +++||+++++|+.++|++. +|++++|+||++++++|+++++++++.+++ + .+....
T Consensus 144 ~~pi~~I---~~~~g~-~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~-~-~~~~~~~~~ 215 (361)
T TIGR01366 144 AVPVRRP---EGSDDA-LVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALER-I-EAIAASGRW 215 (361)
T ss_pred ecccccc---cccCCC-eEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhh-h-hcccCCCCC
Confidence 9999988 588999 8999999999999999985 899999999987777788888889988765 2 221100
Q ss_pred --cC-CCC--cc--cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC-ccccc
Q 012991 283 --EF-GNG--LP--IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP-PEICA 354 (452)
Q Consensus 283 --~~-~~~--~~--~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~ 354 (452)
.+ ... .. ....+.++++...++++.++++++.+. +|++.+.++.+++++++++.|.+.++++++.. ....+
T Consensus 216 ~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~-gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s 294 (361)
T TIGR01366 216 VPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGN-GGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRS 294 (361)
T ss_pred CchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcc
Confidence 00 000 00 011235677777778999999999873 46999999999999999999999865665432 21112
Q ss_pred -ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHH
Q 012991 355 -AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFR 433 (452)
Q Consensus 355 -~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~ 433 (452)
.+..+.++ ++.+..++.+.|.++ ||.+..++.. ..++.+|+|++.++|.+||++++
T Consensus 295 ~~v~~v~~~------~g~~~~~v~~~L~~~-gI~i~~~~~~----------------l~~~~vRis~~~~~t~~di~~l~ 351 (361)
T TIGR01366 295 QVVGTIDFV------DDIDAATVAKILRAN-GIVDTEPYRK----------------LGRNQLRVAMFPAIDPDDVEALT 351 (361)
T ss_pred cceEEEECC------CccCHHHHHHHHHHC-CCeeccCccc----------------cCCCcEEEEcCCCCCHHHHHHHH
Confidence 22334444 367888999999765 9998543321 22468999999999999999999
Q ss_pred HHHHHHHhc
Q 012991 434 DAVILLVEE 442 (452)
Q Consensus 434 ~~l~~~~~~ 442 (452)
++|++++++
T Consensus 352 ~al~~~~~~ 360 (361)
T TIGR01366 352 ECVDWVVER 360 (361)
T ss_pred HHHHHHHhh
Confidence 999998753
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=243.80 Aligned_cols=355 Identities=18% Similarity=0.145 Sum_probs=238.2
Q ss_pred CCeEEeccCC-CCCCcHHHHHHHHHHHHHHhcCC--chhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 38 HGVARINNGS-FGSCPKSVLADQQKWQLKFLQQP--DDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 38 ~~~~~l~~~~-~~~~p~~v~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
++-++||.-. .|..++.+.+++.++.....+.. .........+.+.++++.+|+++|++ .+.+++|+++++..+
T Consensus 6 ~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~---~~~i~~g~~~a~~~~ 82 (370)
T TIGR02539 6 RGSINLNPLQRGGVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMD---EARVTHGAREGKFAV 82 (370)
T ss_pred ccccccChhhhCCCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCC---ceEEECChHHHHHHH
Confidence 4556666544 45788888888888754221100 01111223446788899999999995 567789999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc-CCCceE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK-DGKMIR 192 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~-~~~~~~ 192 (452)
+.++ .++||+|+++.+.|.+.+.+ ++..|++++.++.. .+..+.+ +++|++.+++... ..++++
T Consensus 83 ~~~l--------~~~gd~Vl~~~~~h~s~~~~----~~~~g~~~~~~~~~--~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 148 (370)
T TIGR02539 83 MHAL--------CKEGDWVVLDGLAHYTSYVA----AERAGLNVKEVPHT--GHPEYKVDPEGYGEVIEEVEDESGKPPV 148 (370)
T ss_pred HHHh--------hCCCCEEEECCcccHHHHHH----HHHcCCEEEEEecC--CcccCCcCHHHHHHHHHHhhhccCCCcE
Confidence 9987 48899999999999887644 46679999999642 1122334 8889888853211 014688
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccc
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILS 272 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~ 272 (452)
+|++++++|++|.+.|+++|.++|+++|+ ++++|++|+.|..+.+...+++|+++.|+|||++++.++|++++++++++
T Consensus 149 lv~~~~p~~~~G~~~~l~~i~~la~~~~~-~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~ 227 (370)
T TIGR02539 149 LALLTHVDGEYGNLPDAGKVAKVCREKGV-PLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWED 227 (370)
T ss_pred EEEEECCCCCCccccCHHHHHHHHHHcCC-eEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHh
Confidence 99999999999999999999999999999 79999999999777666666789999999999765555899999998887
Q ss_pred cCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc
Q 012991 273 SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI 352 (452)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 352 (452)
. +. ....+ +..... ..+.++....+..++.++++...+ .++...+. .++++++++.|.++ |++++.....
T Consensus 228 ~-l~-~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~al~~~~~---~l~~~~~~-~~~~~~l~~~L~~~-g~~~~~~~~s 297 (370)
T TIGR02539 228 I-VL-RKSRY-SPVKEV--ELLGCTSRGAPIVTMMASFPHVVE---RVKRWDEE-VKKTRWFVAELEDI-GFIQLGQKPK 297 (370)
T ss_pred h-hc-ccccC-Ccccee--eeecccccccHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHhC-CcEEEccCCC
Confidence 6 22 11111 111110 011123333344444445544332 23333333 44467899999887 7765322222
Q ss_pred ccceEEEEcCCccc--cCChhhHHHHHHHHhhhcceE-eeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 353 CAAMVMVGLPSRLR--VMGEDDALRLRGHLRVRFGVE-VPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 353 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
.++++++.+|.... ..+..+...+.+.|.++ ||. ++. ..++++|+++. ..|.+|+
T Consensus 298 ~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~-GI~~ir~--------------------~~~~~iRis~~-~~t~e~i 355 (370)
T TIGR02539 298 EHDLVKFETPGFHEIAQKHKRRGYFLYEELKKR-GIHGIRS--------------------GQTKYFKLSVY-GLTKEQV 355 (370)
T ss_pred cCceEEEECCchhHHhhhhccccHHHHHHHHhC-CCccccC--------------------CcceEEEEEec-CCCHHHH
Confidence 37788887752100 01112345788999775 996 431 12359999984 3599999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
++++++|++++++
T Consensus 356 ~~l~~~L~~~~~~ 368 (370)
T TIGR02539 356 EYVVDSFEEIVEE 368 (370)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=242.76 Aligned_cols=329 Identities=14% Similarity=0.088 Sum_probs=244.4
Q ss_pred eEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhh--hhhhhHHHHHHHHHHHhHhCCCCCCcE--EEecChhHHHHHH
Q 012991 40 VARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFY--FNSLRKGILESRAAVKDLINADDVGEI--SLVDNATTAAAIV 114 (452)
Q Consensus 40 ~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~i--~~t~g~t~a~~~~ 114 (452)
-.+++.+... ..+. +++.+..+.....++|+... +....+..+++++.+++++|++ ++++ +||+|||+|+..+
T Consensus 24 ~~~~gy~~~~~~~~~-~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~-~~~~~G~fTsGGTEaNl~a 101 (374)
T PLN03032 24 SVHFGYPYNLDFDYG-ELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE-KDEYWGYITTCGTEGNLHG 101 (374)
T ss_pred hhccCCCchhccChH-HHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC-CccCCEEEeCchHHHHHHH
Confidence 3455544433 3443 78888887766667777643 3466889999999999999996 5555 9999999999988
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+.+.. . ..++..|+++..+|+|+.+++.. .|.+++.+ |.+.++.+ +++|+++|++. ..+|.+
T Consensus 102 l~~ar-~-----~~~~~~vi~s~~~H~Sv~kaa~~----lg~~~~~V----~~d~~g~id~~~L~~~i~~~---~~~~~l 164 (374)
T PLN03032 102 ILVGR-E-----VFPDGILYASRESHYSVFKAARM----YRMEAVKV----PTLPSGEIDYDDLERALAKN---RDKPAI 164 (374)
T ss_pred HHHHH-H-----hCCCcEEEeCCCceeHHHHHHHH----cCCCCeEe----eeCCCCcCcHHHHHHHHHHc---CCCCEE
Confidence 87542 1 13446899999999999888655 47788888 45666777 99999999642 336889
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcC-----CCEEEEecccccCCccc-------cccccCccEEEEcCcccCcCCCCc
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEG-----VDQVFVDAAHAMGSIKI-------DVKEIGADFYVSNLHKWFFCPPSV 261 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~-----~~~~ivD~a~~~g~~~~-------~~~~~~~d~~~~s~~K~l~g~~G~ 261 (452)
|+++..+|.+|.+.|+++|+++|+++| + ++|+|+|++.+..++ ++. .++|++++|+||+++.|.|+
T Consensus 165 vv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~-~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~ 242 (374)
T PLN03032 165 LNVNIGTTVKGAVDDLDRILRILKELGYTEDRF-YIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPC 242 (374)
T ss_pred EEEEecCcCCccCCCHHHHHHHHHHhCCCCCCe-eEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCe
Confidence 999999999999999999999999996 6 499999999887764 443 36999999999975559999
Q ss_pred EEEEEecCccccCC--CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 262 AFLYCRKSILSSDM--HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 262 G~l~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
|+++++++.+.. + ..+|+.. .+....|+.+....+.++..+..+..- |+.++.+++.++++++.+.|.
T Consensus 243 G~ll~r~~~~~~-~~~~~~Yl~~-------~d~ti~gSR~g~~~l~~w~~l~~~G~~--g~~~~~~~~~~~a~~l~~~l~ 312 (374)
T PLN03032 243 GVALTRKKHVKA-LSQNVEYLNS-------RDATIMGSRNGHAPLYLWYTLRRKGYR--GIKRDVQHCMRNAHYLKDRLT 312 (374)
T ss_pred EEEEEEchhhHh-hccCCcccCC-------CCCcccCCCchHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999877653 2 1222211 112334666666667777777777653 888999999999999999998
Q ss_pred HHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 340 NAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
+. ++++...+. ..+++|.-| .... + .+ |+.+. ..++++|++
T Consensus 313 ~~-~~~~~~~p~--~~~V~f~~~---------~~~~----~-~~-~w~l~---------------------~~~~~~hi~ 353 (374)
T PLN03032 313 EA-GLTCRLNEL--SSTVVFERP---------MDEA----F-IK-KWQLA---------------------CEGDIAHVV 353 (374)
T ss_pred hC-CCcEEECCC--ceEEEEcCC---------CcHh----H-hh-eeeec---------------------ccCCEEEEE
Confidence 86 766544443 557777654 1111 3 23 66553 123589999
Q ss_pred ccccCCHHHHHHHHHHHHH
Q 012991 420 HQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~ 438 (452)
+...++.+.++++++.|++
T Consensus 354 vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 354 VMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred ECCCCCHHHHHHHHHHHhc
Confidence 9998999999999999875
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=243.99 Aligned_cols=344 Identities=19% Similarity=0.164 Sum_probs=238.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccccc
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTE 124 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~ 124 (452)
.++..+.+.+++..+...+ ++++. .......+...++++.+++++|+ +++++|+|+|+++.+++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~i~~~~g~t~al~~~l~~~------ 79 (361)
T cd06452 10 GGRLTPEARKALIEWGDGY-SVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM---DEARVTPGAREGKFAVMHSL------ 79 (361)
T ss_pred CCCCCHHHHHHHHHHhccc-CCccccccccccccCchHHHHHHHHHHHcCC---ceEEEeCCHHHHHHHHHHHh------
Confidence 4477777888888877433 33322 11222345689999999999998 58999999999999999876
Q ss_pred CCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc-CCCceEEEEEeccCCC
Q 012991 125 GRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK-DGKMIRLAIIDHITSM 202 (452)
Q Consensus 125 ~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~-~~~~~~lv~~~~~~n~ 202 (452)
+++||+|+++.++|.+.... +...|++++.++.+. +.++.+ ++++++++++... .++++++|++++++|+
T Consensus 80 --~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~ 151 (361)
T cd06452 80 --CEKGDWVVVDGLAHYTSYVA----AERAGLNVREVPNTG--HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGN 151 (361)
T ss_pred --cCCCCEEEEcCCcchHHHHH----HHhcCCEEEEEecCC--CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCC
Confidence 58899999999999887644 456799999996521 111244 8888888853210 0147899999999999
Q ss_pred CcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceec
Q 012991 203 PCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSH 282 (452)
Q Consensus 203 tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~ 282 (452)
+|...|+++|.++|+++|+ ++++|++++.|..+++...+++|++++|+||+++++.++|++++++++++. +.... ..
T Consensus 152 tG~~~~~~~i~~~~~~~~~-~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~-l~~~~-~~ 228 (361)
T cd06452 152 YGNLHDAKKIAKVCHEYGV-PLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADI-VFRTS-QM 228 (361)
T ss_pred CeeeccHHHHHHHHHHcCC-eEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHH-Hhccc-cc
Confidence 9999999999999999999 799999999998888877778999999999998777779999998877765 21111 00
Q ss_pred cCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcC
Q 012991 283 EFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLP 362 (452)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 362 (452)
++... ...+.+++....++++.++++...+ ..+.+.+ ..++++++++.|.+++|++++.+.....+++.+..+
T Consensus 229 -~~~~~--~~~~~~~~~~~~~~~~~~al~~~~~---~~~~~~~-~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~ 301 (361)
T cd06452 229 -FKIKE--VELLGCTLRGAPLVTLMASFPHVKE---RVKRWDE-EVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETP 301 (361)
T ss_pred -cccce--eeeeccccCchHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcC
Confidence 11110 0112233333344455555555443 2333333 345568899999988888776433233667777664
Q ss_pred Ccccc--CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 363 SRLRV--MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 363 ~~~~~--~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
.-... ....++.++.+.|.++ ||.+. . .....++|++... .+++|++.++++|+++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~L~~~-gI~~~----~---------------~~~~~~~ri~~~g-~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 302 SFDEIAKKHKRRGYFLYSELKKR-GIHGI----K---------------PGLTRYFKLSTYG-LTWEQVEYVVDAFKEIA 360 (361)
T ss_pred CcchhhhhccccchhHHHHHHHc-CceEE----c---------------CCCceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence 10000 0012234688999765 99852 1 1224589999944 58999999999999765
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-28 Score=215.74 Aligned_cols=361 Identities=18% Similarity=0.180 Sum_probs=283.3
Q ss_pred HHHHHhhhccCCCCeEEeccCCCCCCc-HHHHHHHHHHHHHHhcCCchh-h--hhhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFGSCP-KSVLADQQKWQLKFLQQPDDF-Y--FNSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~~~p-~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
....|++|. .-.++|||+.++.|..| .......+.....|....... + ...+..+-+.+-.+++.++|+. ..++
T Consensus 19 l~~lr~~f~-lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~-~~Ev 96 (407)
T COG3844 19 LAKLRDRFA-LPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGAR-AGEV 96 (407)
T ss_pred hhhhHhhcc-CCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCC-CCce
Confidence 466788886 56789999999999888 544444555555554333332 2 2455667788999999999996 7899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEe-CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLML-HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKK 179 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~-~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~ 179 (452)
+++.+.+--++.++.+..| ..+|+.||++ ..+|++-.++++-++...+.... -...+ ++++++
T Consensus 97 vv~dtts~nl~k~L~aalr------~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~---------~~~~~~P~~~~~ 161 (407)
T COG3844 97 VVTDTTSINLFKVLAAALR------PQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYD---------LEGVIAPRALEE 161 (407)
T ss_pred EEeCCcchHHHHHHHHHhc------cCCCceEEeecCCCCCcchhhhcchhhhhccccc---------ceeeeChHHHHH
Confidence 9999888777777776642 4557777776 55788888888777766664321 12223 678999
Q ss_pred HHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCC
Q 012991 180 GIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 180 ~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
++ +.++.+|++++.+.-||...++.+|..++|++|+ +++-|-+|+.|.+++++...++||.+.+.+|+|+|++
T Consensus 162 ~~------~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~ga-lv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGP 234 (407)
T COG3844 162 AI------TDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGA-LVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGP 234 (407)
T ss_pred hh------ccceEEEEeccccccccceeeHHHHHHHHHhcCc-eEEeehhcccCCcceeecccCCCeeeeeeceeccCCC
Confidence 99 7899999999999999999999999999999999 9999999999999999999999999999999998877
Q ss_pred C-cEEEEEecCccccCCCCCceeccCCCCcc------------cccccccccCccccccHHHHHHHHHHhhcCHHHHHHH
Q 012991 260 S-VAFLYCRKSILSSDMHHPVVSHEFGNGLP------------IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQR 326 (452)
Q Consensus 260 G-~G~l~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~ 326 (452)
| .+++++.++..+. ..++. +.|+|...+ ...+..|++++.+..++..+++.+... ++.+++++
T Consensus 235 Gapa~l~v~~~h~e~-~~~~l-sgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~--~i~~lR~k 310 (407)
T COG3844 235 GAPAGLFVAPRHRER-SWPPL-SGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADV--DITELRKK 310 (407)
T ss_pred CCceeEEeccccccc-ccccc-ccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhc--CHHHHHHh
Confidence 6 8899998888876 33333 334443221 234567899999999999999999987 89999999
Q ss_pred HHHHHHHHHHHHHHHc---CCCcCCCc--ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 327 NHEQALKMARMLANAW---GTSLGSPP--EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
...+++++.+.++..- ++.+..|. +.++..+.+..| ...++++.|.++ ||...
T Consensus 311 SlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp---------~~~~V~qaLi~r-GVigD------------ 368 (407)
T COG3844 311 SLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP---------HGYQVMQALIDR-GVIGD------------ 368 (407)
T ss_pred hhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC---------cHHHHHHHHHHc-Ccccc------------
Confidence 9999999999887642 45666664 346888888876 667899999775 99863
Q ss_pred CCCCCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHhccc
Q 012991 402 QAGARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
...++.+|+.+ ..|++.+||...++.|.++++..+
T Consensus 369 --------~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 369 --------FREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred --------ccCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 46678999998 577999999999999999997653
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=236.46 Aligned_cols=335 Identities=15% Similarity=0.156 Sum_probs=232.4
Q ss_pred eEEeccC-CCC-CCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 40 VARINNG-SFG-SCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 40 ~~~l~~~-~~~-~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
+.||..+ ..| +.++.+.+++.+.+..+..+.+.. ......+..+++++.++++++++ + .+++++|++++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~-~iv~~sg~~a~~~~~~ 79 (349)
T cd06454 3 VLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKE--A-ALVFSSGYAANDGVLS 79 (349)
T ss_pred ceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCC--C-EEEeccHHHHHHHHHH
Confidence 4455433 344 446789999999997653322221 12345677899999999999985 3 4666777888887777
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
++ +++||+|++++++|.++...+ +..|++++.++. .+ .+++++.+++.. ...++++|++
T Consensus 80 ~~--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~----~~----~~~le~~i~~~~-~~~~~~~v~~ 138 (349)
T cd06454 80 TL--------AGKGDLIISDSLNHASIIDGI----RLSGAKKRIFKH----ND----MEDLEKLLREAR-RPYGKKLIVT 138 (349)
T ss_pred Hh--------cCCCCEEEEehhhhHHHHHHH----HHcCCceEEecC----CC----HHHHHHHHHHhh-ccCCCeEEEE
Confidence 65 478999999999999876554 446888887732 12 456666665321 0246789999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc--------ccccccCccEEEEcCcccCcCCCCcEEEEEec
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK--------IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRK 268 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~--------~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~ 268 (452)
++++|++|...|+++|.++|+++|+ ++|+|++|+.|..+ .+....+.|+++.|+||+ ++++| |+++.++
T Consensus 139 ~~~~~~tG~~~~~~~i~~~~~~~~~-~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~g-G~i~~~~ 215 (349)
T cd06454 139 EGVYSMDGDIAPLPELVDLAKKYGA-ILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKA-FGAVG-GYIAGSK 215 (349)
T ss_pred eccccCCCCccCHHHHHHHHHHcCC-EEEEEccccccccCCCCCChhhhccccccCcEEEeechhh-hcccC-CEEECCH
Confidence 9999999999999999999999999 89999999876543 222344689999999997 55566 7887777
Q ss_pred CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q 012991 269 SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGS 348 (452)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 348 (452)
++.+. + ..... ...+.++.+...++++.++++.+.+ .+.+++++.++++++.+.|.++ ++.+..
T Consensus 216 ~~~~~-~-~~~~~---------~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 279 (349)
T cd06454 216 ELIDY-L-RSYAR---------GFIFSTSLPPAVAAAALAALEVLQG----GPERRERLQENVRYLRRGLKEL-GFPVGG 279 (349)
T ss_pred HHHHH-H-HHhch---------hhhccCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHhc-CCcccC
Confidence 76553 1 11100 0001133444455566666666653 3567888999999999999886 666554
Q ss_pred CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHH
Q 012991 349 PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~d 428 (452)
++. ..+.++..+ +..+..++.+.|.++ ||.+........ ....+++|++++.+++.+|
T Consensus 280 ~~~--~~~~~~~~~------~~~~~~~~~~~L~~~-gI~~~~~~~~~~-------------~~~~~~iRi~~~~~~~~~~ 337 (349)
T cd06454 280 SPS--HIIPPLIGD------DPAKAVAFSDALLER-GIYVQAIRYPTV-------------PRGTARLRISLSAAHTKED 337 (349)
T ss_pred CCC--CcEEEEeCC------ChHHHHHHHHHHHhC-CceEEEecCCcc-------------CCCCCeEEEEEeCCCCHHH
Confidence 433 334444443 234667899999876 999865322110 0124799999999999999
Q ss_pred HHHHHHHHHHH
Q 012991 429 YEKFRDAVILL 439 (452)
Q Consensus 429 i~~l~~~l~~~ 439 (452)
+++++++|+++
T Consensus 338 i~~~~~~l~~~ 348 (349)
T cd06454 338 IDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=238.30 Aligned_cols=334 Identities=15% Similarity=0.170 Sum_probs=236.7
Q ss_pred CCCeEEeccCCCC--CCcHHHHHHHHHHHHHHhcCC--chhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNGSFG--SCPKSVLADQQKWQLKFLQQP--DDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
+..+++++...+- ...+.+.+++.+.+..+..++ ++.+ ....+...++++.+++++|.+ .+++++||++|+.
T Consensus 53 g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~-~~~~~~~~~le~~la~~~g~~---~~~~~~sG~~An~ 128 (407)
T PRK07179 53 GPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVF-LHDDSPKPQFEKKLAAFTGFE---SCLLCQSGWAANV 128 (407)
T ss_pred CCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccc-cCCchHHHHHHHHHHHHhCCC---cEEEECCHHHHHH
Confidence 3346677655433 334559999999887764433 2221 222346788889999999984 5688999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceE
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
.++.++ ..+|+.|+++..+|.+....+ ...|.++..+ +..+ ++++++.+++ .+++
T Consensus 129 ~~l~~l--------~~~g~~v~~~~~~h~s~~~~~----~~~g~~~~~~----~~~d----~~~l~~~l~~-----~~~~ 183 (407)
T PRK07179 129 GLLQTI--------ADPNTPVYIDFFAHMSLWEGV----RAAGAQAHPF----RHND----VDHLRRQIER-----HGPG 183 (407)
T ss_pred HHHHHh--------CCCCCEEEEECCcCHHHHHHH----HHCCCeEEEe----cCCC----HHHHHHHHHh-----cCCe
Confidence 999987 467899999999999886554 3357777665 3222 6888888852 3578
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---------cccccCccEEEEcCcccCcCCCCcEE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
+|++++++|++|.+.|+++|.++|+++|+ ++|+|++|+.|.... +.. .++|+++.|++|++ |+. +|+
T Consensus 184 lV~v~~v~n~tG~i~pl~~I~~l~~~~~~-~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~-g~~-~G~ 259 (407)
T PRK07179 184 IIVVDSVYSTTGTIAPLADIVDIAEEFGC-VLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAF-AGR-AGI 259 (407)
T ss_pred EEEECCCCCCCCccccHHHHHHHHHHcCC-EEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhh-hcc-CeE
Confidence 99999999999999999999999999999 899999998765321 111 24699999999975 554 689
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
+++++++++. + . ... . ...+.++.+...+.++.++++.+.. .+..+++++++++++.+.|.++ +
T Consensus 260 l~~~~~~~~~-~-~-~~~--~------~~~~~~t~~~~~~aa~~aal~~~~~----~~~~~~~l~~~~~~l~~~L~~~-g 323 (407)
T PRK07179 260 ITCPRELAEY-V-P-FVS--Y------PAIFSSTLLPHEIAGLEATLEVIES----ADDRRARLHANARFLREGLSEL-G 323 (407)
T ss_pred EEeCHHHHHH-H-H-HhC--c------CeeeCCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHc-C
Confidence 9888776554 1 1 000 0 0011234444444455566776653 3567788999999999999887 7
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
+++..+ +.++++.++ ...+...+.+.|.++ ||.+...+.+.. ....+++||+++..
T Consensus 324 ~~v~~~----~~i~~l~~~------~~~~~~~~~~~L~~~-GI~~~~~~~p~~-------------~~~~~~lRis~~~~ 379 (407)
T PRK07179 324 YNIRSE----SQIIALETG------SERNTEVLRDALEER-NVFGAVFCAPAT-------------PKNRNLIRLSLNAD 379 (407)
T ss_pred CCCCCC----CCEEEEEeC------CHHHHHHHHHHHHHC-CceEeeecCCCC-------------CCCCceEEEEECCC
Confidence 766532 567777764 233566788888764 998653333211 12357999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 012991 424 NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~~ 443 (452)
+|.+||++++++|++++++.
T Consensus 380 ~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 380 LTASDLDRVLEVCREARDEV 399 (407)
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998753
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=241.92 Aligned_cols=335 Identities=14% Similarity=0.081 Sum_probs=231.0
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC----CC-CC-CcEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----AD-DV-GEISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~-~~i~~t~g~t 108 (452)
.+++++.|+.+.+. ..|+.+.+++.+.+... ..+.+. ..+..++|++|+++++ .+ ++ ++|++|+|++
T Consensus 30 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-----~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~ 103 (399)
T PRK07681 30 AGHKMIDLSIGNPDMPPADFVREEMVHTANQK-----ESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQ 103 (399)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcc-----ccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcH
Confidence 46788999988765 45666788877765321 112222 2456778888888774 21 35 7899999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+++.+++.++ +++||+|++++|+|+.....+ ...|++++.++++. +....+ ++++++.+
T Consensus 104 ~al~~~~~~~--------~~~Gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~--~~~~~~d~~~l~~~~------ 163 (399)
T PRK07681 104 DGLVHLPMVY--------ANPGDIILVPDPGYTAYETGI----QMAGATSYYMPLKK--ENDFLPDLELIPEEI------ 163 (399)
T ss_pred HHHHHHHHHh--------CCCCCEEEECCCCccchHHHH----HhcCCEEEEEecCC--CCCCcCCHHHHHHhc------
Confidence 9999999876 589999999999998865554 45699999996521 111233 78888887
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccc---cc-ccCccEEEEcCcccCc
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KID---VK-EIGADFYVSNLHKWFF 256 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~---~~-~~~~d~~~~s~~K~l~ 256 (452)
.+++++|++++|+||||.+++ +++|+++|+++++ ++|+|++++.... ... +. ..+..+++.|+||. +
T Consensus 164 ~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~-~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~ 241 (399)
T PRK07681 164 ADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNI-IVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKS-Y 241 (399)
T ss_pred cccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCe-EEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccc-c
Confidence 467899999999999999998 5678889999999 7999999863221 111 11 11235778899995 7
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|.+| +|+++.++++++. + .... .....+.+...+.++..+++.... -++..++.++++++.+
T Consensus 242 ~~~GlRiG~~i~~~~l~~~-~-~~~~-----------~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~l 305 (399)
T PRK07681 242 SLAGSRIGYMIGNEEIVRA-L-TQFK-----------SNTDYGVFLPIQKAACAALRNGAA---FCEKNRGIYQERRDTL 305 (399)
T ss_pred CCccceeEEEecCHHHHHH-H-HHHH-----------hhcccCCCHHHHHHHHHHHhCcHH---HHHHHHHHHHHHHHHH
Confidence 7777 8999888777765 2 1110 000012222222333333322111 2455666778888889
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|.+. ++++..|.+ +.++|+.++ .+.+..++.+.|.+++||.+.++..+.. ..++
T Consensus 306 ~~~L~~~-g~~~~~p~~--g~f~~~~l~------~~~~~~~~~~~l~~~~gv~v~pg~~f~~--------------~~~~ 362 (399)
T PRK07681 306 VDGFRTF-GWNVDKPAG--SMFVWAEIP------KGWTSLSFAYALMDRANVVVTPGHAFGP--------------HGEG 362 (399)
T ss_pred HHHHHHC-CCcccCCCe--eeEEEEECC------CCCCHHHHHHHHHHhCCEEEeCChhhCc--------------CCCC
Confidence 9999886 777655554 788999887 3456678888887756999987655421 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHH
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
++|++++. +.++++.++++|++.
T Consensus 363 ~iRis~~~--~~~~~~~~l~~l~~~ 385 (399)
T PRK07681 363 FVRIALVQ--DEEVLQQAVENIRNS 385 (399)
T ss_pred eEEEEecC--CHHHHHHHHHHHHHh
Confidence 99999984 789999999999883
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-28 Score=237.01 Aligned_cols=336 Identities=15% Similarity=0.166 Sum_probs=230.7
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH----hC--CCCCCcEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL----IN--ADDVGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~--~~~~~~i~~t~g~t~a 110 (452)
..++.|+.|.+. +.|+.+.+++.+.+.. +... |....+..++|+.++++ +| ++ +++|++|+|++++
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~----~~~~--Y~~~~G~~~lr~~la~~~~~~~~~~~~-~~~i~~t~g~~~a 96 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALAD----GETF--YTHNLGIPELREALARYVSRLHGVATP-PERIAVTSSGVQA 96 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhc----CCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcC-cceEEEeCChHHH
Confidence 568899888766 4577788888876543 1111 22233445555555554 46 53 6899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++||+|++++|+|......+ +..|++++.+++... +....+ ++++++.+ .+
T Consensus 97 l~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~-~~~~~~d~~~l~~~~------~~ 157 (382)
T PRK06108 97 LMLAAQAL--------VGPGDEVVAVTPLWPNLVAAP----KILGARVVCVPLDFG-GGGWTLDLDRLLAAI------TP 157 (382)
T ss_pred HHHHHHHh--------cCCCCEEEEeCCCccchHHHH----HHCCCEEEEeeCCCC-CCCccCCHHHHHHhc------Cc
Confidence 99999876 588999999999998765544 556999999965321 112234 78898888 46
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc--------ccccc-cCccEEEEcCcccCcC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK--------IDVKE-IGADFYVSNLHKWFFC 257 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~--------~~~~~-~~~d~~~~s~~K~l~g 257 (452)
++++|++++++||||.+++ +++|+++|+++|+ ++|+|++++..... .++.. .+..+++.|++|. +|
T Consensus 158 ~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g 235 (382)
T PRK06108 158 RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGL-WIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKN-WA 235 (382)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCc-EEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhh-cc
Confidence 7899999999999999986 5678899999999 79999997644321 12211 1245788899995 56
Q ss_pred CCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 258 ~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
++| +|++++++++++. + ..... + .....+...+.+...+++.... .++.++++++++++.+.
T Consensus 236 ~~G~RiG~~~~~~~~~~~-~-~~~~~--~---------~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~ 299 (382)
T PRK06108 236 MTGWRLGWLVAPPALGQV-L-EKLIE--Y---------NTSCVAQFVQRAAVAALDEGED---FVAELVARLRRSRDHLV 299 (382)
T ss_pred CcccceeeeeCCHHHHHH-H-HHHHH--h---------cccCCChHHHHHHHHHHhCChH---HHHHHHHHHHHHHHHHH
Confidence 555 7999998877765 1 11100 0 0011222222222223322111 25677888889999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.+.+++++..|.. +.++|+.++ ...+..++++.|.+++||.+.++..+.. ..+++
T Consensus 300 ~~L~~~~~~~~~~p~~--g~~~~~~l~------~~~~~~~~~~~ll~~~gV~v~pg~~f~~--------------~~~~~ 357 (382)
T PRK06108 300 DALRALPGVEVAKPDG--AMYAFFRIP------GVTDSLALAKRLVDEAGLGLAPGTAFGP--------------GGEGF 357 (382)
T ss_pred HHHHhCCCCcccCCCe--eEEEEEeCC------CCCCHHHHHHHHHHhCCEEEeCchhhCC--------------CCCCE
Confidence 9998877777766544 667888886 2345678888886667999976554421 23579
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHh
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+|+|++. +.++++..++.|++.++
T Consensus 358 ~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 358 LRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred EEEEecC--CHHHHHHHHHHHHHHHh
Confidence 9999997 88999999999988764
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-28 Score=214.91 Aligned_cols=352 Identities=13% Similarity=0.145 Sum_probs=269.7
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+....|. +++.-.|..|.+++..... .+++..+.+++.++++-+...|.......+++..+|+.+++.++.+
T Consensus 16 p~~~L~g-PGPsnl~~~V~~A~~~~~l-------gh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N 87 (385)
T KOG2862|consen 16 PVRTLLG-PGPSNLSGRVQEAMSRPSL-------GHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVN 87 (385)
T ss_pred Ccceeec-CCCcCCCHHHHHhhcCCcc-------ccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHh
Confidence 3344444 4455566668888876432 3456777889999999999999876556778888999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +.|||+|++....-.+ ..|..++++.|++|..++.++ .... ++.+++.+. .+++++|++
T Consensus 88 ~--------lePgd~vLv~~~G~wg--~ra~D~~~r~ga~V~~v~~~~----G~~~~le~i~~~ls-----qh~p~~vfv 148 (385)
T KOG2862|consen 88 L--------LEPGDNVLVVSTGTWG--QRAADCARRYGAEVDVVEADI----GQAVPLEEITEKLS-----QHKPKAVFV 148 (385)
T ss_pred h--------cCCCCeEEEEEechHH--HHHHHHHHhhCceeeEEecCc----ccCccHHHHHHHHH-----hcCCceEEE
Confidence 7 6899999987554433 334444789999999995422 2234 888999887 478999999
Q ss_pred eccCCCCccccc-HHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 197 DHITSMPCVVIP-VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 197 ~~~~n~tG~~~~-l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
+|..+.||+..| ++.+.++|++|++ +++||.+.|+|..++.++.|++|+.....+|.|++|+|+++++.++...++ +
T Consensus 149 ~hgdsSTgV~q~~~~~~g~lc~k~~~-lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~-~ 226 (385)
T KOG2862|consen 149 THGDSSTGVLQDLLAISGELCHKHEA-LLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEA-I 226 (385)
T ss_pred EecCccccccchHHHHHHHHhhcCCe-EEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHH-H
Confidence 999999999999 6677899999999 999999999999999999999999999999999999999999988766654 2
Q ss_pred CC----C---ceec-cCCCCcc---cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 276 HH----P---VVSH-EFGNGLP---IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 276 ~~----~---~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
.. + |+.+ +++...- ....|+.|+++..++++.+|++.+.+. |+++..++.+++.++++..|.+. |+
T Consensus 227 ~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~ee--GL~~~~~rH~e~s~~l~~~l~~~-GL 303 (385)
T KOG2862|consen 227 RDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEE--GLENSWRRHREMSKWLKLSLEAL-GL 303 (385)
T ss_pred hhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh-Cc
Confidence 11 1 1110 0111000 125678899999999999999999864 99999999999999999999987 77
Q ss_pred CcCCCc--ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 345 SLGSPP--EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 345 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
+..... .....+..+.+| .+.|..++...+...+++.+.-+..+ ..+..+||++..
T Consensus 304 q~fv~~e~~rlptvttv~vp------~gvDw~dVv~~~~~~~~vei~gglg~----------------~~gKv~RIGl~g 361 (385)
T KOG2862|consen 304 QLFVVDEELRLPTVTTVKVP------YGVDWKDVVAYAMSHYVVEIGGGLGP----------------TVGKVFRIGLLG 361 (385)
T ss_pred cceecChhhccCcceeeecC------CCCCHHHHHHHHHHhcCEEeccccCC----------------CcccEEEEEEee
Confidence 654332 222445566666 57888999999988778888544443 346799999754
Q ss_pred c-CCHHHHHHHHHHHHHHHhcc
Q 012991 423 Y-NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 423 ~-~t~~di~~l~~~l~~~~~~~ 443 (452)
- -+.+-|+..++.|+..+++.
T Consensus 362 cna~~e~i~~v~~ll~~alq~~ 383 (385)
T KOG2862|consen 362 CNANVEYIDNVVELLKLALQRK 383 (385)
T ss_pred ccCCcHHHHHHHHHHHHHHhhc
Confidence 3 36778999999999988763
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=236.37 Aligned_cols=338 Identities=14% Similarity=0.124 Sum_probs=230.8
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
...+|+|+.+... +.++.+.+++.+.+... ....+...++..++|+++++++|++ ++++++|+|+|+++..++
T Consensus 27 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~l~~~-~~~v~~~~g~t~al~~~~ 100 (380)
T PRK06225 27 DKEMIWMGQNTNHLGPHEEVREAMIRCIEEG-----EYCKYPPPEGFPELRELILKDLGLD-DDEALITAGATESLYLVM 100 (380)
T ss_pred cCCeEEccCCCCCCCCCHHHHHHHHHHHhcC-----CCCCCCCCcchHHHHHHHHHhcCCC-CCcEEEeCCHHHHHHHHH
Confidence 4678999876554 56677888888876421 1122344556889999999999996 789999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.++ +.+|++|++++|.|...... ++..|.+++.+++... .++..+ ++.+++.+ ++++++|
T Consensus 101 ~~~--------~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~v~~~~~-~~~~~~d~~~l~~~~------~~~~~~v 161 (380)
T PRK06225 101 RAF--------LSPGDNAVTPDPGYLIIDNF----ASRFGAEVIEVPIYSE-ECNYKLTPELVKENM------DENTRLI 161 (380)
T ss_pred HHh--------cCCCCEEEEcCCCCcchHHH----HHHhCceEEeeccccc-cCCccCCHHHHHhhc------CCCceEE
Confidence 876 47899999999999765333 4556999998864211 112234 88899888 5678999
Q ss_pred EEeccCCCCccccc---HHHHHHHHHHcCCCEEEEeccccc---CCcc-ccccccCccEEEEcCcccCcCCCC--cEEEE
Q 012991 195 IIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAM---GSIK-IDVKEIGADFYVSNLHKWFFCPPS--VAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~---g~~~-~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~ 265 (452)
++++++||||.+++ +++|.++|+++|+ ++|+|+++.. +... .... ....+++.|++|+ +|++| +|+++
T Consensus 162 ~l~~p~NptG~~~~~~~~~~i~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~-~~~~i~~~s~SK~-~g~~G~RiG~i~ 238 (380)
T PRK06225 162 YLIDPLNPLGSSYTEEEIKEFAEIARDNDA-FLLHDCTYRDFAREHTLAAEYA-PEHTVTSYSFSKI-FGMAGLRIGAVV 238 (380)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCc-EEEEehhHHHHhccCCchhhcC-CCCEEEEeechhh-cCCccceeEEEe
Confidence 99999999999886 7788899999999 7999998642 1111 1111 1345777899997 57677 79999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++++. + .+.... ....+...+.+...+++.... -.+.+++..+++.+.+.+.|+++++..
T Consensus 239 ~~~~l~~~-~-~~~~~~------------~~~~~~~~~~~a~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~ 301 (380)
T PRK06225 239 ATPDLIEV-V-KSIVIN------------DLGTNVIAQEAAIAGLKVKDE---WIDRIRRTTFKNQKLIKEAVDEIEGVF 301 (380)
T ss_pred cCHHHHHH-H-HHHHhc------------ccCCCHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHHHhCcCCc
Confidence 98877764 1 111000 011122222222223322111 134555556666777888888766654
Q ss_pred cC-CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 346 LG-SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 346 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
+. .+.. ++++++.++. .+.+..++.+.|.+ +||.++++..+.. ....+++|+|++.
T Consensus 302 ~~~~~~~--g~~~~~~~~~-----~~~~~~~l~~~l~~-~gi~v~~g~~~~~-------------~~~~~~iR~s~~~-- 358 (380)
T PRK06225 302 LPVYPSH--GNMMVIDISE-----AGIDPEDLVEYLLE-RKIFVRQGTYTSK-------------RFGDRYIRVSFSI-- 358 (380)
T ss_pred cccCCCC--CeEEEEEccc-----ccCCHHHHHHHHHH-CCEEEcCCcccCc-------------CCCCceEEEEeCC--
Confidence 32 2322 6688888752 23567889999975 5999977654321 1235699999875
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
++++++++++.|+++++.
T Consensus 359 ~~e~l~~~~~~l~~~~~~ 376 (380)
T PRK06225 359 PREQVEVFCEEFPDVVET 376 (380)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 789999999999999875
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=234.54 Aligned_cols=335 Identities=15% Similarity=0.146 Sum_probs=232.5
Q ss_pred CCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 23 CISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
...+....+.+...+..+++|+.+..+ ..|+.+.+++.... .. ..|+ .....++|++++++++++ +++|
T Consensus 37 ~~~~~~~~~~~~~~~~~~i~l~~n~~p~~~~~~v~~a~~~~~-~~-----~~Yp---~~~~~~lr~~ia~~~~~~-~~~I 106 (380)
T PLN03026 37 ILPFEVLSAQLGRKPEDIVKLDANENPYGPPPEVLEALGNMK-FP-----YVYP---DPESRRLRAALAEDSGLE-SENI 106 (380)
T ss_pred CCChHHHHHHhCCCccceEEccCCCCCCCCCHHHHHHHHhhH-hh-----ccCC---CCCHHHHHHHHHHHhCcC-hhhE
Confidence 445555556554445689999988544 45555888876421 11 1121 123578999999999996 7899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++|+|+++++..++.++ +++||+|++++|.|...... ++..|++++.++. ++++.+ ++++++.
T Consensus 107 ~~t~Ga~~~i~~~~~~~--------~~~gd~Vlv~~P~y~~y~~~----~~~~g~~~~~v~~----~~~~~~d~~~l~~~ 170 (380)
T PLN03026 107 LVGCGADELIDLLMRCV--------LDPGDKIIDCPPTFGMYVFD----AAVNGAEVIKVPR----TPDFSLDVPRIVEA 170 (380)
T ss_pred EEcCCHHHHHHHHHHHh--------cCCCCEEEEcCCChHHHHHH----HHHcCCEEEEeec----CCCCCcCHHHHHHH
Confidence 99999999999999876 58999999999999754332 4557999999854 233344 7888888
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc---cc-cccccCccEEEEcCcccCc
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI---KI-DVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~-~~~~~~~d~~~~s~~K~l~ 256 (452)
++ ++++++|++++|+||||.++|.+++.++++.. + ++|+|+++..... .. .....+..+++.|++|. +
T Consensus 171 ~~-----~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~-~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~-~ 242 (380)
T PLN03026 171 VE-----THKPKLLFLTSPNNPDGSIISDDDLLKILELP-I-LVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKR-A 242 (380)
T ss_pred Hh-----ccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-C-EEEEECcchhhcCCcchHHHHHhCCCEEEEecchHh-h
Confidence 84 36789999999999999999999999999865 8 7999999753211 11 11122345788999995 7
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|++| +|+++.++++++. +. .... ....+...+.+..++++.. . -+++.++.+++.++++
T Consensus 243 glaGlRiGy~~~~~~~i~~-l~-~~~~-------------~~~~~~~~q~aa~~aL~~~-~---~~~~~~~~~~~~r~~l 303 (380)
T PLN03026 243 GLAGLRVGYGAFPLSIIEY-LW-RAKQ-------------PYNVSVAAEVAACAALSNP-K---YLEDVKNALVEERERL 303 (380)
T ss_pred cCccccceeeecCHHHHHH-HH-HhcC-------------CCCCCHHHHHHHHHHhhCH-H---HHHHHHHHHHHHHHHH
Confidence 8777 7898888877764 21 1100 0122223333333344321 1 2566677788889999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|.+++++.+ .+++ ++++++.++ .+.+..++.+.|.+ .||.++.+..+ ..++
T Consensus 304 ~~~L~~~~~~~~-~p~~--~~f~~~~~~------~~~~~~~~~~~l~~-~gI~v~~~~~~----------------~~~~ 357 (380)
T PLN03026 304 FGLLKEVPFLEP-YPSD--ANFILCRVT------SGRDAKKLKEDLAK-MGVMVRHYNSK----------------ELKG 357 (380)
T ss_pred HHHHHHCCCCeE-CCCC--CeEEEEECC------CCCCHHHHHHHHHH-CCeEEEECCCC----------------CCCC
Confidence 999988744443 3333 778898886 23466789999875 59999754321 2356
Q ss_pred eEEecccccCCHHHHHHHHHHHHHH
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
++|||++ +.+++++++++|+++
T Consensus 358 ~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 358 YIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred EEEEecC---CHHHHHHHHHHHHHh
Confidence 9999998 788999999999864
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=235.64 Aligned_cols=319 Identities=17% Similarity=0.171 Sum_probs=227.3
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
..+++.|+.+..+ ..|+.+++++.++......+ .... ..++|+.++++++++ +++|++|+|+++++..++
T Consensus 18 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y-------~~~~-~~~lr~~ia~~~~~~-~~~i~~~~G~~~~l~~~~ 88 (346)
T TIGR01141 18 GKEVIKLNSNENPFGPPPKAKEALRAEADKLHRY-------PDPD-PAELKQALADYYGVD-PEQILLGNGSDEIIELLI 88 (346)
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHhHHHhhcC-------CCCC-HHHHHHHHHHHhCcC-hHHEEEcCCHHHHHHHHH
Confidence 3578899876644 56777999999876433211 1112 378999999999985 789999999999999888
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.++ +++||+|++++|+|+..... ++..|.+++.+++ +.++.+ ++++++.+ ++++++|
T Consensus 89 ~~l--------~~~gd~v~~~~p~y~~~~~~----~~~~g~~~~~~~~----~~~~~~d~~~l~~~~------~~~~~~v 146 (346)
T TIGR01141 89 RAF--------LEPGDAVLVPPPTYSMYEIS----AKIHGAEVVKVPL----DEDGQLDLEDILVAI------DDKPKLV 146 (346)
T ss_pred HHh--------cCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEecc----CCCCCCCHHHHHHhc------CCCCCEE
Confidence 876 47899999999998754333 4557999999854 333434 88888876 5789999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCc---cccc-cccCccEEEEcCcccCcCCCC--cEEEEE
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSI---KIDV-KEIGADFYVSNLHKWFFCPPS--VAFLYC 266 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~---~~~~-~~~~~d~~~~s~~K~l~g~~G--~G~l~~ 266 (452)
++++++||||.+.|++++.++|+.+ ++ ++++|++++.-.. ..+. .....++++.|++|+ +|++| +|++++
T Consensus 147 ~l~~p~NptG~~~~~~~~~~l~~~~~~~~-~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~g~~G~r~G~~~~ 224 (346)
T TIGR01141 147 FLCSPNNPTGNLLSRSDIEAVLERTPEDA-LVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKA-FGLAGLRIGYAIA 224 (346)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCCCc-EEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHh-hhchhhhceeeec
Confidence 9999999999999999999999887 99 7999999763111 1111 112234778899997 55445 799999
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
++++++. + .+.... .+.+. .++..+..++... ...+.++++++++++.+.+.|.+++++++
T Consensus 225 ~~~~~~~-~-~~~~~~-------------~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 285 (346)
T TIGR01141 225 NAEIIDA-L-NKVRAP-------------FNLSR---LAQAAAIAALRDD-DFIEKTVEEINAERERLYDGLKKLPGLEV 285 (346)
T ss_pred CHHHHHH-H-HhccCC-------------CCCCH---HHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 8877765 2 111000 11112 2233334444432 13677788888999999999988777775
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.. +. ++++++.++ . ++.++.+.|.+ .||.+.++..+.. . ++++|+|++ ++
T Consensus 286 ~~-~~--g~~~~~~~~-------~-~~~~~~~~L~~-~gI~v~~g~~f~~--------------~-~~~iRls~~---~~ 335 (346)
T TIGR01141 286 YP-SD--ANFVLIRFP-------R-DADALFEALLE-KGIIVRDLNSYPG--------------L-PNCLRITVG---TR 335 (346)
T ss_pred CC-Cc--CCEEEEecC-------C-CHHHHHHHHHH-CCeEEEeCCCcCC--------------C-CCeEEEecC---CH
Confidence 43 22 678888886 2 56789999976 5999976654311 2 679999987 89
Q ss_pred HHHHHHHHHHH
Q 012991 427 EDYEKFRDAVI 437 (452)
Q Consensus 427 ~di~~l~~~l~ 437 (452)
+|+++++++|+
T Consensus 336 ~~i~~~~~~l~ 346 (346)
T TIGR01141 336 EENDRFLAALR 346 (346)
T ss_pred HHHHHHHHHhC
Confidence 99999999874
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=240.20 Aligned_cols=350 Identities=18% Similarity=0.206 Sum_probs=234.8
Q ss_pred CeEEeccCCCC-CCcHHHHHHHHHHHHHH-hcCC-chhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 39 GVARINNGSFG-SCPKSVLADQQKWQLKF-LQQP-DDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 39 ~~~~l~~~~~~-~~p~~v~e~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
...+++.+.++ ..|..+.+..... ... ..++ ......+..+...+.++++++++|++ .+++.+|+|||+++..++
T Consensus 69 ~~~~lg~g~~~~~~p~~~~~~~~~~-~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~~-~~~v~~~~g~t~~~~~~~ 146 (447)
T PRK00451 69 YPSFLGAGAYDHYIPAVVDHIISRS-EFYTAYTPYQPEISQGTLQAIFEYQTMICELTGMD-VANASMYDGATALAEAAL 146 (447)
T ss_pred CcccCcccccCCcCcHHHHHHHhch-hHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCCC-cceEEecCcHHHHHHHHH
Confidence 45566655554 3455444443222 111 1122 11112345566777888999999996 678999999999999888
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.++. ..+|++|++++++|+++..++..++...|.+++.+++ +++ .+ ++++++.+ ++++++|
T Consensus 147 ~a~~-------~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~----~~~-~~d~~~l~~~i------~~~t~~v 208 (447)
T PRK00451 147 MAVR-------ITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPY----EDG-VTDLEALEAAV------DDDTAAV 208 (447)
T ss_pred HHHH-------hcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecC----CCC-CCCHHHHHHhc------CCCeEEE
Confidence 8762 3688999999999999999998878888999999954 333 44 89999999 5789999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEE--ecccccCCccccccccCccEEEEcCccc----CcCCCCcEEEEEec
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFV--DAAHAMGSIKIDVKEIGADFYVSNLHKW----FFCPPSVAFLYCRK 268 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~iv--D~a~~~g~~~~~~~~~~~d~~~~s~~K~----l~g~~G~G~l~~~~ 268 (452)
+++++ |+||.+.|+++|+++|+++|+ ++++ |.. +.|... ....+++|++++|++|| .++++|+|++++++
T Consensus 209 ~l~~p-n~tG~v~~l~~I~~~a~~~~~-~~iv~~d~~-~~g~~~-~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~ 284 (447)
T PRK00451 209 VVQYP-NFFGVIEDLEEIAEIAHAGGA-LFIVGVDPV-SLGLLK-PPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRK 284 (447)
T ss_pred EEECC-CCCCeeCCHHHHHHHHHHCCC-EEEEEcChH-HhccCC-CcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhH
Confidence 99998 889999999999999999999 6887 543 455443 23567899999998885 23334789999998
Q ss_pred CccccCCCCCce-eccC---C---CC------cccccccccccCccc---cccHHH--HHHHHHHhhcCHHHHHHHHHHH
Q 012991 269 SILSSDMHHPVV-SHEF---G---NG------LPIESAWIGTRDYSA---QLVIPS--AVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 269 ~~~~~~l~~~~~-~~~~---~---~~------~~~~~~~~~~~~~~~---~~~~~~--al~~~~~~~~g~~~~~~~~~~~ 330 (452)
+++.. + ++.+ .+.. + .. ........++.+... +.++.+ +++++.+. |++++.+++.++
T Consensus 285 ~~~~~-~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~--g~~~~~~~~~~~ 360 (447)
T PRK00451 285 KLVRQ-M-PGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPE--GLRELAEQNHQK 360 (447)
T ss_pred HHHhh-C-CCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHH
Confidence 88775 2 2221 1100 0 00 000111223333322 111222 34445433 899999999999
Q ss_pred HHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
++++.+.|.+++++++.... ...++.+.++ .+..++.+.|.++ ||.+........ .
T Consensus 361 ~~~l~~~L~~~~g~~~~~~~--~~~~~~v~~~--------~~~~~~~~~L~~~-gi~~~~~~~~~~-------------~ 416 (447)
T PRK00451 361 AHYLAERLAEIGGVELFDGP--FFNEFVVRLP--------KPAEEVNEALLEK-GILGGYDLGRYY-------------P 416 (447)
T ss_pred HHHHHHHHhhcCCEEecCCC--eEEEEEEecC--------CCHHHHHHHHHhc-CCCCCccccccc-------------C
Confidence 99999999998777765221 1222334442 2457899999765 887421111000 0
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
...+++|+|++.++|++||++++++|++++
T Consensus 417 ~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 417 ELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred CcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 123689999999999999999999998864
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-28 Score=237.51 Aligned_cols=342 Identities=11% Similarity=0.084 Sum_probs=233.0
Q ss_pred HhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCCCcEE
Q 012991 30 RDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDVGEIS 102 (452)
Q Consensus 30 r~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~i~ 102 (452)
++.++ .++++++|+.+.++ +.|+.+.+++.+.+... . ..|....+..++|+.++++++ ++ +++|+
T Consensus 25 ~~~~~-~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~---~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~ 96 (387)
T PRK08960 25 NELEA-AGHDVIHLEIGEPDFTTAEPIVAAGQAALAAG---H---TRYTAARGLPALREAIAGFYAQRYGVDVD-PERIL 96 (387)
T ss_pred HHHHh-cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcC---C---CccCCCCCCHHHHHHHHHHHHHHhCCCCC-hhhEE
Confidence 44454 46789999999988 57888999998876521 1 123334556778888888873 43 78999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
+|+|+++++.+++.++ +++||+|++++|+|+++...+.. .|.+++.++++. +....+ ++.+++.+
T Consensus 97 it~G~~~al~~~~~~~--------~~~gd~vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~--~~~~~~d~~~l~~~~ 162 (387)
T PRK08960 97 VTPGGSGALLLASSLL--------VDPGKHWLLADPGYPCNRHFLRL----VEGAAQLVPVGP--DSRYQLTPALVERHW 162 (387)
T ss_pred EccCcHHHHHHHHHHh--------cCCCCEEEEcCCCCcchHHHHHh----cCCeEEEEecCc--ccCCCCCHHHHHHHh
Confidence 9999999999999876 58999999999999998766543 588998886521 112234 78888888
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCc---cccccccC-ccEEEEcCccc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSI---KIDVKEIG-ADFYVSNLHKW 254 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~~~-~d~~~~s~~K~ 254 (452)
.++++++++++++||||..+|.+ +|+++|+++|+ ++|+|+++..-.. ...+.... -.+++.|+||.
T Consensus 163 ------~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~-~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 235 (387)
T PRK08960 163 ------NADTVGALVASPANPTGTLLSRDELAALSQALRARGG-HLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKY 235 (387)
T ss_pred ------CccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCChhhccCCEEEEeecccc
Confidence 56788999999999999999855 56777899999 7999998753211 11111122 23677899995
Q ss_pred CcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 255 l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~~~~~~~~~~ 331 (452)
+|++| +|+++++++++.. + ..... .+....+...+.++..++.. ... -++..++.+++.+
T Consensus 236 -~g~~GlRiG~~~~~~~~~~~-~-~~~~~-----------~~~~~~s~~~q~a~~~~l~~~~~~---~l~~~~~~~~~~~ 298 (387)
T PRK08960 236 -FGMTGWRLGWLVAPPAAVPE-L-EKLAQ-----------NLYISASTPAQHAALACFEPETLA---ILEARRAEFARRR 298 (387)
T ss_pred -cCCcccEEEEEEcCHHHHHH-H-HHHHh-----------hhccCCCHHHHHHHHHHhhcCcHH---HHHHHHHHHHHHH
Confidence 77777 8999998877764 1 11100 00012222233333333321 111 3556677778888
Q ss_pred HHHHHHHHHHcCCCcC-CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLG-SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
+.+.+.|.+. ++.+. .|.+ +.++|+.+++ ...+..++++.|.+++||.+.++..+.. .
T Consensus 299 ~~l~~~L~~~-~~~~~~~p~g--~~f~~~~~~~-----~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------~ 357 (387)
T PRK08960 299 DFLLPALREL-GFGIAVEPQG--AFYLYADISA-----FGGDAFAFCRHFLETEHVAFTPGLDFGR-------------H 357 (387)
T ss_pred HHHHHHHHhc-CCcCCcCCCe--eEEEEEeccc-----cCCCHHHHHHHHHHhCCEEEcCchHhCC-------------C
Confidence 8899999876 65542 3433 7788888862 1245678888776557999987765522 1
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..++++|++++. +.+.++..++.|++++
T Consensus 358 ~~~~~iRi~~~~--~~~~l~~al~~l~~~~ 385 (387)
T PRK08960 358 QAGQHVRFAYTQ--SLPRLQEAVERIARGL 385 (387)
T ss_pred CCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 234699999995 5677777777777655
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=233.83 Aligned_cols=348 Identities=11% Similarity=0.099 Sum_probs=237.6
Q ss_pred HHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCC-C-CCcEEEe
Q 012991 29 IRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINAD-D-VGEISLV 104 (452)
Q Consensus 29 ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~-~-~~~i~~t 104 (452)
+++..+ ...++++|+.|.+. +.|+.+.+++.+.+... ....+ ...+..+..+.+++.+++.+|.+ + +++|++|
T Consensus 19 ~~~~~~-~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~--~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t 95 (389)
T PRK05957 19 VGQLIR-ENPGTISLGQGVVSYPPPPEAIEALNNFLANP--ENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVT 95 (389)
T ss_pred HHHHHH-hCCCeEEccCCCCCCCCCHHHHHHHHHHHhCC--CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEe
Confidence 344443 23578999988876 57788999998876422 11111 12334566777888888888864 2 5689999
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
+|+++++..++.++ +++||+|++++|.|..+...+ +..|++++.++. +++..+ ++++++.+
T Consensus 96 ~G~~~~l~~~~~~~--------~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~----~~~~~~d~~~l~~~i-- 157 (389)
T PRK05957 96 AGSNMAFMNAILAI--------TDPGDEIILNTPYYFNHEMAI----TMAGCQPILVPT----DDNYQLQPEAIEQAI-- 157 (389)
T ss_pred CChHHHHHHHHHHh--------cCCCCEEEEeCCCCcCHHHHH----HhcCCEEEEeec----CCCCCcCHHHHHHhc--
Confidence 99999999888876 589999999999998764443 456999999954 333345 89999988
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc------c-ccc-cccCccEEEEcCc
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI------K-IDV-KEIGADFYVSNLH 252 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~------~-~~~-~~~~~d~~~~s~~ 252 (452)
++++++|++++++||||.++| +++|+++|+++|+ ++++|++++.... + ... ....-.+++.|++
T Consensus 158 ----~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 232 (389)
T PRK05957 158 ----TPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGI-YHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLS 232 (389)
T ss_pred ----CcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCc-EEEEeccchhccCCCCCccChhhCCCccCcEEEEecch
Confidence 568999999999999999998 7788999999999 8999999753211 1 111 1112347788999
Q ss_pred ccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 253 KWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 253 K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
|. +|++| +|++++++++++. + .... .......+...+.+ +...+.+-..-+++.+++++++
T Consensus 233 K~-~g~~GlRiG~~~~~~~~~~~-~-~~~~-----------~~~~~~~~~~~q~~---~~~~l~~~~~~~~~~~~~~~~~ 295 (389)
T PRK05957 233 KA-YGFASWRIGYMVIPIHLLEA-I-KKIQ-----------DTILICPPVVSQYA---ALGALQVGKSYCQQHLPEIAQV 295 (389)
T ss_pred hh-ccCccceeEEEecCHHHHHH-H-HHHH-----------hhcccCCCcHHHHH---HHHHHhCChHHHHHHHHHHHHH
Confidence 95 78888 8999988877765 1 1110 00011222222222 2333332000245666777888
Q ss_pred HHHHHHHHHHHcCC-CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGT-SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 331 ~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
++.+.+.|.+++++ .+..+.. +.++|+.++ .+.++.++++.|.+++||.+.++..+..
T Consensus 296 r~~l~~~L~~~~~~~~~~~~~g--g~~~~~~~~------~~~~~~~~~~~l~~~~gv~v~pg~~f~~------------- 354 (389)
T PRK05957 296 RQILLKSLGQLQDRCTLHPANG--AFYCFLKVN------TDLNDFELVKQLIREYRVAVIPGTTFGM------------- 354 (389)
T ss_pred HHHHHHHHHhcCCCccccCCCe--eEEEEEeCC------CCCChHHHHHHHHHHCCEEEccchhhCC-------------
Confidence 88899999887554 4443333 678888876 3567788999987656999987765521
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+|++.. +.+++++.++.|.+.++.
T Consensus 355 -~~~~~iRis~~~~-~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 355 -KNGCYLRIAYGAL-QKATAKEGIERLVQGLKT 385 (389)
T ss_pred -CCCCEEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 2246999999753 577777777777776653
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=250.90 Aligned_cols=323 Identities=20% Similarity=0.255 Sum_probs=238.3
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChh----HHHHHHHHHhhcccccCCCCCCC----EEEEeCCcchhHHHHH
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNAT----TAAAIVLQQIGRGFTEGRFHRND----TVLMLHCAFQAVKKSI 147 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t----~a~~~~~~~l~~~~~~~~~~~g~----~Vl~~~~~~~s~~~~~ 147 (452)
.+..+.+.++++.+++++|. +.|.|++++| +++++++.++.. .+|| +|+++..+|.++..+|
T Consensus 564 ~g~~~~~~~~r~~la~i~g~---~~v~f~pnaga~ge~a~~~vi~~~~~-------~~Gd~~r~~vli~~~aH~sn~a~a 633 (993)
T PLN02414 564 QGYQEMFEDLGDLLCEITGF---DSFSLQPNAGAAGEYAGLMVIRAYHL-------SRGDHHRNVCIIPVSAHGTNPASA 633 (993)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CeEEEcCCCcHHHHHHHHHHHHHHHh-------ccCCCCCCEEEeCCCcCccCHHHH
Confidence 56677899999999999999 5999999999 899999998731 2255 8999999999999888
Q ss_pred HHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEE
Q 012991 148 QAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFV 226 (452)
Q Consensus 148 ~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~iv 226 (452)
.+ .|.+++.+ +.++++.+ +++|++.++++ ++++++|++++++|.+|...|+++|.++||++|+ ++++
T Consensus 634 ~~----~G~~vv~v----~~d~~G~vDle~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Ga-lv~v 701 (993)
T PLN02414 634 AM----CGMKIVVV----GTDAKGNINIEELRKAAEAH---KDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGG-QVYM 701 (993)
T ss_pred HH----CCCEEEEe----ccCCCCCcCHHHHHHHHhcc---CCCeEEEEEECCCccccccchHHHHHHHHHHcCC-EEEE
Confidence 65 59999999 44556666 99999999632 3579999999999999999999999999999999 8999
Q ss_pred ecccccCCc-cccccccCccEEEEcCcccCcCCCC-----cEEEEEecCccccCCCCCceeccCCCCccc--cccccccc
Q 012991 227 DAAHAMGSI-KIDVKEIGADFYVSNLHKWFFCPPS-----VAFLYCRKSILSSDMHHPVVSHEFGNGLPI--ESAWIGTR 298 (452)
Q Consensus 227 D~a~~~g~~-~~~~~~~~~d~~~~s~~K~l~g~~G-----~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~ 298 (452)
|+++..+.. ..+...+++|++.+|.|||+++|.| +|++++++.+... ++.......+ +... ...+.|+.
T Consensus 702 DgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~--lPg~~v~~~~-~~~~r~~~s~iGt~ 778 (993)
T PLN02414 702 DGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF--LPSHPVVPTG-GIPRPEKTQPLGTI 778 (993)
T ss_pred EecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhccc--CCCCccccCC-CcccccCCCCcCCc
Confidence 999988874 4456678999999999999986654 9999999877765 2221100000 0000 11123554
Q ss_pred Ccccc---ccHHHHHHHHHHhhcCHHHH---HHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhh
Q 012991 299 DYSAQ---LVIPSAVTFVSRFEGGIDGI---MQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDD 372 (452)
Q Consensus 299 ~~~~~---~~~~~al~~~~~~~~g~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (452)
+.... .++..++.++..+ |.+.+ .++...+++|+.+.|.+..++....+.+.+.+-+.+.++. .....+.+
T Consensus 779 ~~a~~g~al~l~~A~~yi~~l--G~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~-l~~~~g~~ 855 (993)
T PLN02414 779 SAAPWGSALILPISYTYIAMM--GSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRP-FKNTAGIE 855 (993)
T ss_pred cchhhhhHHHHHHHHHHHHHH--CHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccc-cccccCCC
Confidence 43222 5566677777765 55555 8888999999999998755555444332212223333321 11112356
Q ss_pred HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 373 ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 373 ~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
+.++.+.|. ++||..+..+.+ .++++|+++..+++.+|+|+++++|+.+.++..
T Consensus 856 ~~di~krL~-d~Gihapt~~~p-----------------v~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 856 PEDVAKRLM-DYGFHAPTMSWP-----------------VPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred HHHHHHHHH-HcCcEEeeeccc-----------------cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 688999997 579998764432 257999999999999999999999999887643
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=242.95 Aligned_cols=384 Identities=15% Similarity=0.085 Sum_probs=242.9
Q ss_pred ccccccCCCCCCCCCHHHHHhhhcc---------CCCCeEEeccCCCC-----------------CC-------------
Q 012991 11 THHVSKKPKLTRCISEAEIRDEFSH---------HQHGVARINNGSFG-----------------SC------------- 51 (452)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ir~~~~~---------~~~~~~~l~~~~~~-----------------~~------------- 51 (452)
++++++...++.+..+....++... .+.++|+|+.|.+. ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~ 89 (481)
T PTZ00377 10 INPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLF 89 (481)
T ss_pred cCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccC
Confidence 4455555566666666444433322 24689999988873 22
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC----CC-CCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----AD-DVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
|..+++++.+.+.... .....|....+..++|++++++++ .+ ++++|++|+|+++++.+++.++
T Consensus 90 P~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l-------- 158 (481)
T PTZ00377 90 PADVVARAKEYLNAIG---GGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLL-------- 158 (481)
T ss_pred CHHHHHHHHHHHHhCC---CcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh--------
Confidence 5567777765544321 112235556678888898998875 21 3789999999999999999977
Q ss_pred C-CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 127 F-HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 127 ~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
+ ++||+|++++|.|++....+ +..|.+++.+++. .++...+ +++|+++++.....+.++++|++++|+||||
T Consensus 159 ~~~~gD~Vlv~~P~y~~y~~~~----~~~g~~~v~v~~~--~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG 232 (481)
T PTZ00377 159 IGDPSDGVMIPIPQYPLYSAAI----TLLGGKQVPYYLD--EEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTG 232 (481)
T ss_pred ccCCCCEEEECCCCchhHHHHH----HHcCCEEEEEEec--cccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCC
Confidence 4 68999999999999876655 4469999998652 1222234 7899988853222234799999999999999
Q ss_pred cccc---HHHHHHHHHHcCCCEEEEecccccCCc----cc-cc----cccC-------ccEEEEcCcccCcCCCC--cEE
Q 012991 205 VVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KI-DV----KEIG-------ADFYVSNLHKWFFCPPS--VAF 263 (452)
Q Consensus 205 ~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~-~~----~~~~-------~d~~~~s~~K~l~g~~G--~G~ 263 (452)
.+++ +++|+++|++|++ ++|+|+++..... +. .+ ..+. .-+++.|+||.+++++| +|+
T Consensus 233 ~~~s~e~~~~i~~~a~~~~~-~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~ 311 (481)
T PTZ00377 233 QVLTRDVMEEIIKFCYEKGI-VLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGY 311 (481)
T ss_pred cCCCHHHHHHHHHHHHHCCC-EEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEE
Confidence 9998 6788999999999 7999999864211 11 11 0111 12566799997677666 788
Q ss_pred EEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH-------HHhhcCHHHHHHHHHHHHHH
Q 012991 264 LYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV-------SRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 264 l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-------~~~~~g~~~~~~~~~~~~~~ 333 (452)
+++ ++++++. +. ... ... ..++...+.++..+++.. ..+......++++++++++.
T Consensus 312 ~~~~~~p~~li~~-l~-~~~-----------~~~-~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~ 377 (481)
T PTZ00377 312 FELTNIPPEVREQ-IY-KLA-----------SIN-LCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAEL 377 (481)
T ss_pred EEEeCCCHHHHHH-HH-HHh-----------hee-cCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 876 5666654 11 110 000 123333444444444210 00000123344456778888
Q ss_pred HHHHHHHHcCCCcCCCcccccceEEEEcCCccccC-----Chh-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 334 MARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVM-----GED-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 334 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
+.+.|.+++++.+..|++ ++++|+.++...... .+. +...++..+.++.||.+.++..+...
T Consensus 378 l~~~L~~~~g~~~~~p~g--g~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~---------- 445 (481)
T PTZ00377 378 LTDELNKIEGVSCQPVEG--AMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQK---------- 445 (481)
T ss_pred HHHHHhcCCCcEeecCCe--eEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCC----------
Confidence 899998877777766654 677776543100000 001 12344444545569999877665221
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
...+++|+|+. .+.++++..+++|+++++..
T Consensus 446 ---~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~ 476 (481)
T PTZ00377 446 ---PGTYHFRITIL--PPEEQIEEMVKKIKEFHESF 476 (481)
T ss_pred ---CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH
Confidence 23469999998 47888999999999888753
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=232.03 Aligned_cols=335 Identities=16% Similarity=0.155 Sum_probs=232.9
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS 102 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~ 102 (452)
.++....+++ .+..++.|+.+... ..|+.+.+++.+.......++.. ...++++.++++++++ +++|+
T Consensus 20 ~~~~~~~~~~--~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~--------~~~~lr~~ia~~~~~~-~~~i~ 88 (367)
T PRK02731 20 KPIEELVREY--GIADIIKLASNENPLGPSPKAIEAIRAAADELHRYPDG--------SGFELKAALAEKFGVD-PERII 88 (367)
T ss_pred CCHHHHHHhc--CCCceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCCC--------cHHHHHHHHHHHhCcC-HHHEE
Confidence 4554444445 35678888876432 34566888888876543222221 1368999999999996 78999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHh
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIE 182 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~ 182 (452)
+|+|+++++.+++.++ +++||+|++++|.|...... +...|.+++.++. ++.+..++.+++.+
T Consensus 89 ~t~G~~~~l~~~~~~l--------~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~~~~----~~~~~~~~~l~~~~- 151 (367)
T PRK02731 89 LGNGSDEILELLARAY--------LGPGDEVIYSEHGFAVYPIA----AQAVGAKPVEVPA----KDYGHDLDAMLAAV- 151 (367)
T ss_pred EcCCHHHHHHHHHHHh--------cCCCCEEEEecCCHHHHHHH----HHHcCCeEEEecc----cCCCCCHHHHHHHh-
Confidence 9999999999988876 47899999999999654332 4557999998843 22222278898888
Q ss_pred ccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCc------ccccc-ccCccEEEEcCcc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSI------KIDVK-EIGADFYVSNLHK 253 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~------~~~~~-~~~~d~~~~s~~K 253 (452)
.+++++|++++++||||.++|.++|.++++.+ ++ ++|+|+++..... .++.. ...-.+++.|++|
T Consensus 152 -----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 225 (367)
T PRK02731 152 -----TPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDV-LVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSK 225 (367)
T ss_pred -----CCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCc-EEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehH
Confidence 46889999999999999999999999999875 89 7999999754321 11111 1123467779999
Q ss_pred cCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 254 WFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 254 ~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
. +|.+| +|++++++++++. + ...... ...+. .+..++...+.. ....+.++++.++++
T Consensus 226 ~-~g~~G~RiG~l~~~~~~~~~-l-~~~~~~-------------~~~~~---~~~~~a~~~l~~-~~~~~~~~~~~~~~~ 285 (367)
T PRK02731 226 A-YGLAGLRVGYGIAPPEIIDA-L-NRVRQP-------------FNVNS---LALAAAVAALDD-DAFVEKSRALNAEGM 285 (367)
T ss_pred h-hcCcccceeeeeCCHHHHHH-H-HHccCC-------------CCCCH---HHHHHHHHHhCC-HHHHHHHHHHHHHHH
Confidence 5 66555 6999998877764 1 111000 01111 223333444332 113567777888888
Q ss_pred HHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
+.+.+.|.+. ++.+. ++. ++++|+.++ +..++.++.+.|.+ +||.++.+..+ .
T Consensus 286 ~~l~~~L~~~-g~~~~-~~~--g~~~~i~~~------~~~~~~~~~~~L~~-~gI~v~~~~~~----------------~ 338 (367)
T PRK02731 286 AWLTEFLAEL-GLEYI-PSV--GNFILVDFD------DGKDAAEAYQALLK-RGVIVRPVAGY----------------G 338 (367)
T ss_pred HHHHHHHHHC-CCccC-CCC--ceEEEEECC------CCCCHHHHHHHHHH-CCEEEEeCCCC----------------C
Confidence 8999999887 76654 333 778899885 34577889999976 59999765432 1
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|++++ +.+|+++++++|+++++.
T Consensus 339 ~~~~iRis~~---~~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 339 LPNALRITIG---TEEENRRFLAALKEFLAA 366 (367)
T ss_pred CCCeEEEecC---CHHHHHHHHHHHHHHHhc
Confidence 2469999997 789999999999998753
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=235.94 Aligned_cols=344 Identities=14% Similarity=0.121 Sum_probs=228.4
Q ss_pred CCCeEEeccCCCC--CCcHHHHHHHHHHHHHHhcCCchhhh--hhhhHHHHHHHHHHHhHhCCC-CC-CcEEEecChhHH
Q 012991 37 QHGVARINNGSFG--SCPKSVLADQQKWQLKFLQQPDDFYF--NSLRKGILESRAAVKDLINAD-DV-GEISLVDNATTA 110 (452)
Q Consensus 37 ~~~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~-~~-~~i~~t~g~t~a 110 (452)
..+.++|+.+.+. ..|+.+.+++.+.+... ....|+ .+..++.+.+.+.+++.+|.+ ++ ++|++|+|++++
T Consensus 38 ~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~a 114 (405)
T PRK06207 38 PGRPVDFSHGDVDAHEPTPGAFELFSAGVERG---GVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGA 114 (405)
T ss_pred CCCceecCCcCCCCCCCCHHHHHHHHHHHhcC---CCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 4568899988776 35566777777665321 111121 223334445555555555853 35 799999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCC-CCChHHH-HHHHHHHHhccccCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFP-LASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~-~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
+.+++.++ +++||+|++++|.|+.....+ +..|.+++.++++.. .+++..+ +++|++++ .
T Consensus 115 l~~~~~~l--------~~~Gd~Vlv~~P~y~~~~~~~----~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~------~ 176 (405)
T PRK06207 115 LFLAVAAT--------VARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYLSADKRAGLDLDQLEEAF------K 176 (405)
T ss_pred HHHHHHHh--------cCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEeccccCcccCCCcCHHHHHHhh------h
Confidence 99999976 589999999999998765444 556999998876311 1122334 89999988 4
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEcCcccCcC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSNLHKWFFC 257 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~l~g 257 (452)
+++++|++++|+||||.+++ +++|+++|+++|+ ++|+|++++.... ...+.. .+.-+++.|++|. ++
T Consensus 177 ~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~-~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~-~~ 254 (405)
T PRK06207 177 AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGA-TVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKT-ES 254 (405)
T ss_pred hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhh-cc
Confidence 57899999999999999998 5578888999999 7999999874221 111111 1223788899996 66
Q ss_pred CCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 258 ~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
.+| +|+++.++++++. + ..... .+....+...+.++ ..++.+-.+-++...++.++.++.+.
T Consensus 255 lpGlRiG~ii~~~~l~~~-~-~~~~~-----------~~~~~~~~~~q~a~---~~~l~~~~~~~~~~~~~~~~~r~~l~ 318 (405)
T PRK06207 255 LSGYRLGVAFGSPAIIDR-M-EKLQA-----------IVSLRAAGYSQAVL---RTWFSEPDGWMKDRIARHQAIRDDLL 318 (405)
T ss_pred CcccceEEEEcCHHHHHH-H-HHHHh-----------HhccCCCHHHHHHH---HHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 667 8999888877765 1 11100 00011111222222 23332200014555666677788888
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.+++++++..|.+ ++++|+.++. ...+..++.+.|.+++||.+.++..+.. ..+++
T Consensus 319 ~~L~~~~~~~~~~p~g--g~fl~~~l~~-----~~~~~~~~~~~l~~~~gV~v~pG~~F~~--------------~~~~~ 377 (405)
T PRK06207 319 RVLRGVEGVFVRAPQA--GSYLFPRLPR-----LAVSLHDFVKILRLQAGVIVTPGTEFSP--------------HTADS 377 (405)
T ss_pred HHHhcCCCceecCCCe--eEEEEEeCcc-----cCCCHHHHHHHHHHhcCEEEeCchHhCC--------------CCCCe
Confidence 8887766666655544 7889998862 1246678999887557999987765422 23579
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|||++. +.++++..+++|++.++.
T Consensus 378 ~Ris~~~--~~~~l~~al~rl~~~l~~ 402 (405)
T PRK06207 378 IRLNFSQ--DHAAAVAAAERIAQLIER 402 (405)
T ss_pred EEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 9999985 688899999999888754
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=236.47 Aligned_cols=340 Identities=16% Similarity=0.108 Sum_probs=228.8
Q ss_pred hhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEE
Q 012991 31 DEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISL 103 (452)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~ 103 (452)
++....+++++.|+.+.+. ..|+.+.+++.+.+... ....|....+..++|+++++++ |.+ +++ +|++
T Consensus 24 ~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~ 98 (385)
T PRK09276 24 AEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDP-----ENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVIS 98 (385)
T ss_pred HHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCC-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE
Confidence 3333356778999988766 45667888887765421 1112333344677778788876 432 244 5888
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|+++++..++.++ +++||+|++++|.|+.....+ +..|.+++.+++.. ++...+ ++.+++.+
T Consensus 99 t~G~~~~i~~~~~~~--------~~~gd~Vl~~~P~y~~~~~~~----~~~g~~~~~v~~~~--~~g~~~d~~~l~~~~- 163 (385)
T PRK09276 99 LIGSKEGIAHIPLAF--------VNPGDVVLVPDPGYPVYKIGT----IFAGGEPYFMPLKE--ENGFLPDLDAIPEDV- 163 (385)
T ss_pred ccCcHHHHHHHHHHh--------CCCCCEEEEcCCCCcChHHHH----HHcCCEEEEEecCC--CCCCcCCHHHHHHhc-
Confidence 999999999999876 589999999999998765444 44699999986521 112233 77888777
Q ss_pred ccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----ccccc---c-cCccEEEEcC
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDVK---E-IGADFYVSNL 251 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~---~-~~~d~~~~s~ 251 (452)
.+++++|++++|+||||.+++. ++|+++|++|++ ++|+|+++..... ...+. . .+..+++.|+
T Consensus 164 -----~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 237 (385)
T PRK09276 164 -----AKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDI-IVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSL 237 (385)
T ss_pred -----cccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCc-EEEEecchhheecCCCCCCChhccCCCcCCEEEEecc
Confidence 4688999999999999999985 678888999999 7999999864221 11111 1 1235778899
Q ss_pred cccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 252 HKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
+|. +|++| +|++++++++++. + ...... .....+...+.++..+++.... -++.+++++++
T Consensus 238 SK~-~g~~GlRiG~~i~~~~l~~~-~-~~~~~~-----------~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~ 300 (385)
T PRK09276 238 SKT-YNMTGWRIGFAVGNADLIAG-L-GKVKSN-----------VDSGVFQAIQEAGIAALNGPQE---VVEELRKIYQE 300 (385)
T ss_pred hhh-cCCcchhheeeeCCHHHHHH-H-HHHHhh-----------ccCCCCHHHHHHHHHHHcCcHH---HHHHHHHHHHH
Confidence 995 78888 8999988877765 1 111000 0011111222222333322122 35677778888
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++.+.+.|.+. ++++..+.. +.++|+.++ +..+..++.+.|.+++||.+.++..+..
T Consensus 301 ~~~~l~~~L~~~-~~~~~~~~~--~~~~~v~~~------~~~~~~~l~~~ll~~~gi~v~~g~~f~~------------- 358 (385)
T PRK09276 301 RRDILVEGLRKL-GLEVEPPKA--TFYVWAPVP------KGYTSAEFATLLLDKAGVVVTPGNGFGE------------- 358 (385)
T ss_pred HHHHHHHHHHhC-CCcccCCCc--ceEEEEECC------CCCCHHHHHHHHHHhCCEEECCchhhCC-------------
Confidence 899999999886 777665543 667888886 3456778888876656999987655421
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
..++++||+++. +++++...++.|++
T Consensus 359 -~~~~~~Ris~~~--~~~~l~~~l~~l~~ 384 (385)
T PRK09276 359 -YGEGYFRIALTV--PDERIEEAVERIKK 384 (385)
T ss_pred -CCCCeEEEEeCC--CHHHHHHHHHHHhh
Confidence 225799999974 67777777777654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=234.24 Aligned_cols=335 Identities=18% Similarity=0.146 Sum_probs=227.0
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t 108 (452)
.++.++.|+.+.++ ..|+.+.+++.+.+.. + ....|....+..++|+.+++++ |.+ +++ +|++|+|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~ 101 (383)
T TIGR03540 27 EGVDVISLGIGDPDLPTPKHIVEALCKAAEN----P-ENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSK 101 (383)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----C-CCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcH
Confidence 45788999988776 4567788888876532 1 1112333344566777777765 342 234 688999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+++..++.++ +++||+|++++|+|+.....+ +..|.++..+++.. ++...+ ++++++.+
T Consensus 102 ~~l~~~~~~~--------~~~gd~vlv~~P~y~~~~~~~----~~~G~~v~~v~~~~--~~g~~~d~~~l~~~~------ 161 (383)
T TIGR03540 102 EGIAHIPLAF--------VNPGDIVLVPDPGYPVYRIGT----LFAGGEPYEMPLKE--ENGFLPDFDAIPEDI------ 161 (383)
T ss_pred HHHHHHHHHh--------CCCCCEEEEeCCCCcchHHHH----HhcCCEEEEEecCc--ccCCccCHHHHHhhc------
Confidence 9999999876 589999999999998865554 45699999996521 111233 78888887
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC----ccccccc----cCccEEEEcCcccCc
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKE----IGADFYVSNLHKWFF 256 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~----~~~d~~~~s~~K~l~ 256 (452)
.+++++|++++|+||||.+++ +++|+++|++|++ ++|+|++++... ....+.. .+..+++.|++|. +
T Consensus 162 ~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~-~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~-~ 239 (383)
T TIGR03540 162 AKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNI-IVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKT-Y 239 (383)
T ss_pred cccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCE-EEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccc-c
Confidence 467899999999999999998 5788899999999 799999986321 1122111 1234778899995 7
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|.+| +|+++.++++++. + ..... ......+...+.++..+++.... -.+.+++.++++++.+
T Consensus 240 g~~GlRiG~~i~~~~l~~~-~-~~~~~-----------~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 303 (383)
T TIGR03540 240 NMTGWRIGMAVGNADLIAG-L-GKVKT-----------NVDSGVFQAIQYAAIAALNGPQD---VVKEIRKIYQRRRDLL 303 (383)
T ss_pred CCccceeeEEeCCHHHHHH-H-HHHHH-----------hcccCCChHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHH
Confidence 7777 8999888877765 1 11100 00011222223333333322111 2556677788889999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|.+. ++.+..+.+ +.++|+.++ ++.+..++.+.|.+++||.+.++..+.. ..++
T Consensus 304 ~~~L~~~-~~~~~~~~~--~~~~~~~l~------~~~~~~~~~~~ll~~~gi~v~~g~~f~~--------------~~~~ 360 (383)
T TIGR03540 304 LEALKKI-GIDVEKPKA--TFYVWVPVP------EGYTSAEFAARLLEETGVVVTPGVGFGE--------------YGEG 360 (383)
T ss_pred HHHHHhC-CCEecCCCc--ceEEEEECC------CCCCHHHHHHHHHHHCCEEEecchhhCc--------------cCCC
Confidence 9999887 777665543 667888887 3556778888876556999987765522 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHH
Q 012991 415 YARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
++|++++. +.++++..++.|++
T Consensus 361 ~~Ris~~~--~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 361 YIRISLTV--PDERLEEAVARIKK 382 (383)
T ss_pred eEEEEecC--CHHHHHHHHHHHhh
Confidence 99999974 67777777776653
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=229.12 Aligned_cols=335 Identities=15% Similarity=0.162 Sum_probs=230.5
Q ss_pred CCCCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGSF-G-SCPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.++.++.|+.+.+ + +.|+.+.+++.+.+..+... ......++..+...++++.++++++.+ +.+++++| ++++.
T Consensus 14 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~~G-~~~~~ 90 (360)
T TIGR00858 14 DGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTE--AALLFSSG-YLANV 90 (360)
T ss_pred CCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC--CEEEECch-HHHHH
Confidence 4667888877753 4 46677999999887653211 111111333466788999999999874 66666666 55655
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceE
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
.++.++ +++||+|+++++.|.+....+. ..|.+++.++ ..+ .+.+++.++... +.+++
T Consensus 91 ~~l~~~--------~~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~~----~~d----~~~l~~~~~~~~--~~~~~ 148 (360)
T TIGR00858 91 GVISAL--------VGKGDLILSDALNHASLIDGCR----LSGARVRRYR----HND----VEHLERLLEKNR--GERRK 148 (360)
T ss_pred HHHHHh--------CCCCCEEEEEccccHHHHHHHH----hcCCceEEec----CCC----HHHHHHHHHHcc--cCCCe
Confidence 566654 4789999999999998766653 4588888773 222 577777775310 14678
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc---------ccccCccEEEEcCcccCcCCCCcEE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID---------VKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~---------~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
+|++++++|++|...|+++|.++|+++|+ ++|+|++|+.+..+.+ +...+.|+++.|++|+ +++.| |+
T Consensus 149 ~v~~~~~~~~~G~~~~~~~i~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~-~~~~g-G~ 225 (360)
T TIGR00858 149 LIVTDGVFSMDGDIAPLPQLVALAERYGA-WLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKA-LGSYG-AY 225 (360)
T ss_pred EEEEeCCccCCCCCcCHHHHHHHHHHcCc-EEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhh-hhccC-cE
Confidence 99999999999999999999999999999 8999999987654321 2223568999999997 66777 88
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
++.+++++.. + ...... ....+..+...+.++.+++++... .+.++++++++++++.+.|.++ +
T Consensus 226 ~~~~~~~~~~-~-~~~~~~---------~~~~~~~~~~~~~a~~~al~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~ 289 (360)
T TIGR00858 226 VAGSQALIDY-L-INRART---------LIFSTALPPAVAAAALAALELIQE----EPWRREKLLALIARLRAGLEAL-G 289 (360)
T ss_pred EEcCHHHHHH-H-HHhCcc---------ceecCCCCHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHHHHc-C
Confidence 8887776654 1 111000 000112222334445556665553 3567889999999999999886 6
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
+++..+ . ++++++.++ ...+..++.+.|.+ +||.+..+..+.. ...++++|++++.+
T Consensus 290 ~~~~~~-~--~~~~~~~~~------~~~~~~~~~~~l~~-~gI~v~~~~~~~~-------------~~~~~~iRis~~~~ 346 (360)
T TIGR00858 290 FTLMPS-C--TPIVPVIIG------DNASALALAEELQQ-QGIFVGAIRPPTV-------------PAGTSRLRLTLSAA 346 (360)
T ss_pred CccCCC-C--CCEEEEEeC------CHHHHHHHHHHHHH-CCeeEeeeCCCCC-------------CCCCceEEEEEcCC
Confidence 665432 2 668888775 23467789999976 4999965433211 12246899999999
Q ss_pred CCHHHHHHHHHHHH
Q 012991 424 NTLEDYEKFRDAVI 437 (452)
Q Consensus 424 ~t~~di~~l~~~l~ 437 (452)
++.+|+++++++|+
T Consensus 347 ~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 347 HTPGDIDRLAEALK 360 (360)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=229.42 Aligned_cols=321 Identities=17% Similarity=0.154 Sum_probs=225.0
Q ss_pred CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 39 GVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 39 ~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
..+.|+.+.+. +.|+.+++++.+.+... .. . .+. .....++|+.++++++++ +++|++|+|+++++.+++.+
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~--~~-~--~y~-~~~~~~lr~~ia~~~~~~-~~~i~it~G~~~~l~~~~~~ 95 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKSS--QV-N--IYP-DPTAEKLREELARYCSVV-PTNIFVGNGSDEIIHLIMLA 95 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhcC--cc-c--CCC-CccHHHHHHHHHHHhCCC-cccEEEecCHHHHHHHHHHH
Confidence 35678777766 57788999988766421 11 1 122 223588999999999996 78999999999999999987
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +++||+|++++|.|...... ++..|.+++.+++ ++++.+ +++++++++ ..++++|++
T Consensus 96 l--------~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~----~~~~~~d~~~l~~~~~-----~~~~k~v~l 154 (351)
T PRK14807 96 F--------INKGDVVIYPHPSFAMYSVY----SKIAGAVEIPVKL----KEDYTYDVGSFIKVIE-----KYQPKLVFL 154 (351)
T ss_pred h--------cCCCCEEEEeCCChHHHHHH----HHHcCCeEEEeec----CCCCCCCHHHHHHHhh-----ccCCCEEEE
Confidence 6 58999999999999764332 4567999999854 333334 788998884 248999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC--cccc-ccccCccEEEEcCcccCcCCCC--cEEEEEecCcc
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS--IKID-VKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSIL 271 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~--~~~~-~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~ 271 (452)
++++||||..++.+++.++|++++. ++|+|+++..-. ...+ .....-.+++.|++|. +|.+| +|+++.+++++
T Consensus 155 ~~p~NPtG~~~~~~~l~~l~~~~~~-~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~-~~~~GlRiG~~v~~~~~~ 232 (351)
T PRK14807 155 CNPNNPTGSVIEREDIIKIIEKSRG-IVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKA-FGLAGLRVGYAVANENIL 232 (351)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCC-EEEEeCcchhhcccchHHHhhhCCCEEEEecchHh-cccchhceeeeecCHHHH
Confidence 9999999999999999999999898 799999985321 1111 1122345788899996 66666 88988877776
Q ss_pred ccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc
Q 012991 272 SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE 351 (452)
Q Consensus 272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 351 (452)
+. + ..... ....+...+.+ +..++... .+++..++++++++.+.+.|.+++++.+. +++
T Consensus 233 ~~-~-~~~~~-------------~~~~~~~~q~~---~~~~l~~~--~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~ 291 (351)
T PRK14807 233 KY-L-NLVKS-------------PYNINSLSQVI---ALKVLRTG--VLKERVNYILNERERLIKELSKIPGIKVY-PSK 291 (351)
T ss_pred HH-H-HHccC-------------CCCcCHHHHHH---HHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCC
Confidence 64 1 11100 01112222222 33333321 35666667778888898888877677654 333
Q ss_pred cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHH
Q 012991 352 ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 431 (452)
++++|+.++ +..++.+.|.+ +||.++.+... ...++++||+++ +.++.++
T Consensus 292 --~~~~~i~~~---------~~~~~~~~l~~-~gV~v~~~~~~---------------~~~~~~iRis~~---~~~~~~~ 341 (351)
T PRK14807 292 --TNFILVKFK---------DADYVYQGLLE-RGILVRDFSKV---------------EGLEGALRITVS---SCEANDY 341 (351)
T ss_pred --ccEEEEEcC---------CHHHHHHHHHH-CCEEEEECCCC---------------CCCCCeEEEEcC---CHHHHHH
Confidence 668888775 35678888876 49999653221 123579999998 6888999
Q ss_pred HHHHHHHHH
Q 012991 432 FRDAVILLV 440 (452)
Q Consensus 432 l~~~l~~~~ 440 (452)
++++|++++
T Consensus 342 l~~~l~~~~ 350 (351)
T PRK14807 342 LINGLKELL 350 (351)
T ss_pred HHHHHHHhh
Confidence 999998864
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=235.88 Aligned_cols=338 Identities=13% Similarity=0.080 Sum_probs=229.1
Q ss_pred hccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC-CCCCCcEEEecChhHH
Q 012991 33 FSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN-ADDVGEISLVDNATTA 110 (452)
Q Consensus 33 ~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~i~~t~g~t~a 110 (452)
+...+++++.|..+.+. ..|..+ +++.+.+... ...|....+..++|+.++++++ ++ +++|++|+|+++|
T Consensus 21 ~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~-~~~vi~t~G~~~a 92 (373)
T PRK07324 21 YDIAESCIDSLTLEELLALAGKNP-EAFYQELGQK------KLTYGWIEGSPEFKEAVASLYQNVK-PENILQTNGATGA 92 (373)
T ss_pred cccccCCCCCCcHHHHHhccCcch-HHHHHHHhcC------CccCCCCCCCHHHHHHHHHHhcCCC-hhhEEEcCChHHH
Confidence 33357788888877765 455556 6665554321 1123344567889999999885 54 7899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +.+||+|+++.|.|.+.... ++..|++++.+++.. +....+ ++++++.+ .+
T Consensus 93 l~~~~~~l--------~~~gd~Vl~~~P~y~~~~~~----~~~~g~~v~~v~~~~--~~~~~~d~~~l~~~~------~~ 152 (373)
T PRK07324 93 NFLVLYAL--------VEPGDHVISVYPTYQQLYDI----PESLGAEVDYWQLKE--ENGWLPDLDELRRLV------RP 152 (373)
T ss_pred HHHHHHHh--------CCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEeccc--ccCCCCCHHHHHHhC------CC
Confidence 99999977 58999999999999876444 455799999996531 111223 78888877 57
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc---ccccc-cCccEEEEcCcccCcCCCC--
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK---IDVKE-IGADFYVSNLHKWFFCPPS-- 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~~~~~-~~~d~~~~s~~K~l~g~~G-- 260 (452)
++++|++++++||||.+++ +++|+++|++||+ ++|+|++++.-... ..+.. .+-.+++.|++|. +|.+|
T Consensus 153 ~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~-~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~-~~~~G~R 230 (373)
T PRK07324 153 NTKLICINNANNPTGALMDRAYLEEIVEIARSVDA-YVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKT-YSLPGIR 230 (373)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEccccccccCCCCCChhhccCCEEEEecchhh-cCCccce
Confidence 8999999999999999998 7888999999999 79999987532211 11111 1224677899996 67667
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|+++++++++.. + ..... ....+.+.....+...+++.... -++..++.++++++.+.+.|.+
T Consensus 231 iG~i~~~~~li~~-~-~~~~~-----------~~~~~~~~~~q~~a~~~l~~~~~---~l~~~~~~~~~~~~~l~~~l~~ 294 (373)
T PRK07324 231 VGWIAANEEVIDI-L-RKYRD-----------YTMICAGVFDDMLASLALEHRDA---ILERNRKIVRTNLAILDEWVAK 294 (373)
T ss_pred eEEEecCHHHHHH-H-HHHhC-----------cEEecCChHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 7998887777664 1 11100 00011222222222233332222 2455566667777778888877
Q ss_pred HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc
Q 012991 341 AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420 (452)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 420 (452)
.+++....|.. ++++++.++ ...+..++++.|.+++||.+.++..+ ..++++|||+
T Consensus 295 ~~~~~~~~p~g--g~~~~i~~~------~~~~~~~~~~~ll~~~gv~v~pg~~F----------------~~~~~iRis~ 350 (373)
T PRK07324 295 EPRVSYVKPKA--VSTSFVKLD------VDMPSEDFCLKLLKETGVLLVPGNRF----------------DLEGHVRIGY 350 (373)
T ss_pred CCCceEECCCc--eEEEEEEeC------CCCCHHHHHHHHHHhcCEEEECcccc----------------CCCCeEEEEe
Confidence 65666555544 455566664 23466788888766679999876654 2347999999
Q ss_pred cccCCHHHHHHHHHHHHHHHhc
Q 012991 421 QVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 421 ~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+. +++.++..+++|++++++
T Consensus 351 ~~--~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 351 CC--DTETLKKGLKKLSEFLRE 370 (373)
T ss_pred cC--CHHHHHHHHHHHHHHHHh
Confidence 75 688899999999998865
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=229.83 Aligned_cols=338 Identities=10% Similarity=0.071 Sum_probs=226.9
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS 102 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~ 102 (452)
.++....+.+...+.+++.|+.+... ..|+.+.+++.+.+..... |+ .....++|++++++++++ +++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~-----y~---~~~~~~lr~~ia~~~~~~-~~~i~ 76 (356)
T PRK08056 6 GNIREAATVLGISPDQLLDFSANINPLGMPVSLKRAIIDNLDCAER-----YP---DVEYRHLHQALARHHQVP-ASWIL 76 (356)
T ss_pred ccHHHHHHHhCCChhhEEEeccccCCCCCCHHHHHHHHHHHHhccc-----Cc---CccHHHHHHHHHHHhCcC-hhhEE
Confidence 34444444555445678999877554 6777799999876654321 21 123689999999999996 89999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHh
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIE 182 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~ 182 (452)
+|+|+++++..++.++ .+|+ +++..|.|...... ++..|.+++.+++.. ++...+-+++++.+
T Consensus 77 it~Ga~~~l~~~~~~l---------~~g~-viv~~P~y~~~~~~----~~~~g~~~~~v~~~~--~~~~~~~~~~~~~~- 139 (356)
T PRK08056 77 AGNGETESIFAVVSGL---------KPRR-AMIVTPGFAEYRRA----LQQVGCEIRRYSLRE--ADGWQLTDAILEAL- 139 (356)
T ss_pred ECCCHHHHHHHHHHHh---------CCCC-EEEeCCCcHHHHHH----HHHcCCeEEEEeccc--ccCCCccHHHHHhc-
Confidence 9999999999998864 5665 67778888765443 455799999996521 11111123455555
Q ss_pred ccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccc-ccccCccEEEEcCccc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KID-VKEIGADFYVSNLHKW 254 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~-~~~~~~d~~~~s~~K~ 254 (452)
.+++++|++++|+||||.+++ +++|+++|+++++ ++|+|+++.--.. ..+ +...+.++++.|+||+
T Consensus 140 -----~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 213 (356)
T PRK08056 140 -----TPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNI-ALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKF 213 (356)
T ss_pred -----cCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCC-EEEEecchhccCCcchHHHHHhccCCCEEEEEechhh
Confidence 468899999999999999999 6778999999999 7999998643211 011 2223456888999996
Q ss_pred CcCCCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 255 l~g~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
+|++| +|+++++ ++++.. +. .... ..+.+...+ .++...+.. ..-.+.+++.+++.+
T Consensus 214 -~~~~G~RiG~~v~~~~~~~~~-l~-~~~~-------------~~~~~~~~~---~~a~~~l~~-~~~~~~~~~~~~~~r 273 (356)
T PRK08056 214 -YAIPGLRLGYLVNSDDAAVAR-MR-RQQM-------------PWSINAFAA---LAGEVILQD-RAYQQATWQWLAEEG 273 (356)
T ss_pred -ccCcchhheeeecCCHHHHHH-HH-HhCC-------------CCchhHHHH---HHHHHHhCC-HHHHHHHHHHHHHHH
Confidence 77666 8888874 344443 11 1000 011122222 222222221 012456677788889
Q ss_pred HHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
+++.+.|.+++++.+. ++. ++++|+.++. +..++++.|.+ .||.++.+..+.+ .
T Consensus 274 ~~l~~~L~~~~~~~~~-~~~--~~~~~~~~~~--------~~~~~~~~l~~-~gI~v~~~~~f~~--------------~ 327 (356)
T PRK08056 274 ARFYQALCALPLLTVW-PGR--ANYLFLRCER--------PDIDLQRALLT-QRILIRSCANYPG--------------L 327 (356)
T ss_pred HHHHHHHhcCCCcEEc-CCC--CcEEEEEcCC--------ChHHHHHHHHH-CCeEEEECCCCCC--------------C
Confidence 9999999877666554 333 6788887751 34578888876 5999987665421 3
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++||+++ +.++.++++++|+++++.
T Consensus 328 ~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 355 (356)
T PRK08056 328 DSRYYRVAIR---SAAENERLLAALRNVLTG 355 (356)
T ss_pred CCCEEEEEEc---CHHHHHHHHHHHHHHHcc
Confidence 3579999998 789999999999998754
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=232.12 Aligned_cols=335 Identities=17% Similarity=0.160 Sum_probs=226.0
Q ss_pred CCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 23 CISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
.......+++|....+.+++|+.+... ..++.+.+++.+.......++. ....++++.++++++++ ++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--------~~~~~lr~~ia~~~~~~-~~~i 89 (361)
T PRK00950 19 GKSKEEIAREYGIDPESIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPE--------PDAPELREALSKYTGVP-VENI 89 (361)
T ss_pred CCCHHHHHHHhCCCccceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHhCCC-HHHE
Confidence 344666788887655689999766432 3445578888776544322221 12388999999999996 7899
Q ss_pred EE-ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHH
Q 012991 102 SL-VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKK 179 (452)
Q Consensus 102 ~~-t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~ 179 (452)
++ |+|+++++..++.++ .++|++|++++|.|...... ++..|++++.++. ++++.+ ++++++
T Consensus 90 ~~~~~Ga~~~i~~~~~~~--------~~~gd~vlv~~p~y~~~~~~----~~~~g~~~~~~~~----~~~~~~~~~~l~~ 153 (361)
T PRK00950 90 IVGGDGMDEVIDTLMRTF--------IDPGDEVIIPTPTFSYYEIS----AKAHGAKPVYAKR----EEDFSLDVDSVLN 153 (361)
T ss_pred EEeCCCHHHHHHHHHHHh--------cCCCCEEEEcCCChHHHHHH----HHHcCCEEEEeec----CCCCCcCHHHHHH
Confidence 99 678888888888765 47899999999988765433 4556999998853 333344 888988
Q ss_pred HHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-cc-c-ccccCccEEEEcCcccCc
Q 012991 180 GIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-KI-D-VKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 180 ~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~-~-~~~~~~d~~~~s~~K~l~ 256 (452)
.+ ..++++|++++++||||.++|.+++.++|+++|+ ++|+|++++.... .. . ....+..+++.|++|. +
T Consensus 154 ~~------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~-~ 225 (361)
T PRK00950 154 AI------TEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDA-LVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKV-F 225 (361)
T ss_pred Hh------ccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCc-EEEEECchhhhCccchHHHHHhcCCEEEEEeehHh-h
Confidence 88 4678999999999999999999999999999999 7999999864321 00 1 1111234677899995 7
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|.+| +|+++++++++.. +. ..... ...+ ..+...+...+... +-+++.+++.+++++++
T Consensus 226 g~~GlRiG~~~~~~~~~~~-~~-~~~~~-------------~~~~---~~~~~~a~~~l~~~-~~~~~~~~~~~~~r~~l 286 (361)
T PRK00950 226 GLAGLRIGYGFVPEWLIDY-YM-RAKTP-------------FSLT---RLSQAAAIAALSDK-EYIEKSIEHGIKSREYL 286 (361)
T ss_pred cCchhhcchhcCCHHHHHH-HH-HhcCC-------------CCCC---HHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHH
Confidence 7676 7888888776654 11 11000 0111 12223333333321 12444555555555555
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|. +.+. ++. ++++|+.++ ..+..++.+.|.+ +||.++++..+.. ..++
T Consensus 287 ~~~l~----~~~~-~~~--~~~i~~~~~-------~~~~~~~~~~l~~-~gv~v~~~~~f~~--------------~~~~ 337 (361)
T PRK00950 287 YNELP----FKVY-PSE--ANFVLVDVT-------PMTAKEFCEELLK-RGVIVRDCTSFRG--------------LGDY 337 (361)
T ss_pred HhhcC----eeEC-CCc--ceEEEEECC-------CCCHHHHHHHHHH-CCEEEeeCCccCC--------------CCCC
Confidence 55543 3332 333 678888774 3467889999976 5999976544321 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++|+|++ +.+++++++++|+++++
T Consensus 338 ~lRis~~---~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 338 YIRVSIG---TFEENERFLEILKEIVE 361 (361)
T ss_pred eEEEECC---CHHHHHHHHHHHHHHhC
Confidence 9999998 78899999999998763
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=233.98 Aligned_cols=336 Identities=15% Similarity=0.149 Sum_probs=233.2
Q ss_pred CCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CCCCCcEEEecChhHH
Q 012991 38 HGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--ADDVGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~i~~t~g~t~a 110 (452)
++++.|+.+.+.. .|..+.+++.+.+.. .. ..|....+..++|+++++++ | ++ +++|++|+|++++
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~--~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~a 105 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALDE----GW--THYTPNAGIPELREAIAEYYKKFYGVDVD-VDNVIVTAGAYEA 105 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHhc----CC--CCCCCCCCcHHHHHHHHHHHHHHhCCCCC-cccEEEeCChHHH
Confidence 5688998887663 467778887776532 11 12333455677888888876 3 43 6899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++|++|++++|+|.+.... +...|.+++.++++. +....+ ++++++.+ .+
T Consensus 106 l~~~~~~l--------~~~g~~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~i------~~ 165 (391)
T PRK08361 106 TYLAFESL--------LEEGDEVIIPDPAFVCYVED----AKIAEAKPIRIPLRE--ENEFQPDPDELLELI------TK 165 (391)
T ss_pred HHHHHHHh--------cCCCCEEEEcCCCCcccHHH----HHHcCCEEEEEecCC--ccCCCCCHHHHHHhc------cc
Confidence 99999876 58899999999999886544 355699999986521 112234 89999888 46
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc--cCccEEEEcCcccCcCCCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE--IGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~--~~~d~~~~s~~K~l~g~~G 260 (452)
++++|++++|+||||..+| +++|+++|+++++ ++|+|++++.... ...... ...++++.|++|. +|++|
T Consensus 166 ~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~-~~~~G 243 (391)
T PRK08361 166 RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNI-YILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKT-FAMTG 243 (391)
T ss_pred ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCe-EEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchh-cCCcH
Confidence 7899999999999999999 7788999999999 7999999764321 111111 1356888999995 77778
Q ss_pred --cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFE--GGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 261 --~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~g~~~~~~~~~~~~~~l~~ 336 (452)
+|+++++++++.. +. ... ....+..+...+ .++...+.... +.++.++++++++++.+.+
T Consensus 244 lRiG~~~~~~~~~~~-~~-~~~-----------~~~~~~~~~~~q---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (391)
T PRK08361 244 WRLGFVIAPEQVIKD-MI-KLH-----------AYIIGNVASFVQ---IAGIEALRSKESWKAVEEMRKEYNERRKLVLK 307 (391)
T ss_pred hhhhhhccCHHHHHH-HH-HHH-----------hhhccCCChHHH---HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHH
Confidence 8999998777664 11 110 000011222222 22333333210 1256777888888888999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.+++++.+..+++ +.++|+.++. .+.+..++.+.|.+++||.+.++..+.. ..++++
T Consensus 308 ~L~~~~~~~~~~p~g--~~~~~~~l~~-----~~~~~~~l~~~l~~~~gv~v~pg~~f~~--------------~~~~~i 366 (391)
T PRK08361 308 RLKEMPHIKVFEPKG--AFYVFANIDE-----TGMSSEDFAEWLLEKARVVVIPGTAFGK--------------AGEGYI 366 (391)
T ss_pred HHHhCCCCeecCCCE--EEEEEEECCC-----CCCCHHHHHHHHHHhCCEEEcCchhhCC--------------CCCCEE
Confidence 998876777666554 6678888862 1346778888886657999987665421 235799
Q ss_pred EecccccCCHHHHHHHHHHHHHHHh
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~ 441 (452)
|++++. +.++++..++.|++.++
T Consensus 367 Ri~~~~--~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 367 RISYAT--SKEKLIEAMERMEKALE 389 (391)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHh
Confidence 999985 67789999999988774
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=232.34 Aligned_cols=337 Identities=17% Similarity=0.166 Sum_probs=230.0
Q ss_pred CCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC----CC-CC-CcEEEecChhHH
Q 012991 38 HGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----AD-DV-GEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~-~~i~~t~g~t~a 110 (452)
++++.|+.+.+.. .+..+.+++.+.+.. . ...|....+..++|++++++++ .+ ++ ++|++|+|+++|
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~--~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~a 93 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQ----G--YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQA 93 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhc----C--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHH
Confidence 4688998877663 455577777665432 1 1123334456777777777764 32 23 479999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++||+|++++|+|+.....+ +..|.++..+++. .+++..+ ++++++++ .+
T Consensus 94 l~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~~--~~~~~~~d~~~l~~~~------~~ 153 (378)
T PRK07682 94 LDVAMRAI--------INPGDEVLIVEPSFVSYAPLV----TLAGGVPVPVATT--LENEFKVQPAQIEAAI------TA 153 (378)
T ss_pred HHHHHHHh--------CCCCCEEEEeCCCchhhHHHH----HHcCCEEEEeecC--CccCCCCCHHHHHhhc------Cc
Confidence 99999876 589999999999998754443 4468888888652 1222334 89999888 46
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc-----c-cccc-cCccEEEEcCcccCcCCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK-----I-DVKE-IGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~-~~~~-~~~d~~~~s~~K~l~g~~ 259 (452)
++++|++++|+||||.+++ +++|+++|++|++ ++|+|++++..... + .+.. ....+++.|++|. +|.+
T Consensus 154 ~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~ 231 (378)
T PRK07682 154 KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDL-IVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKG-FAMT 231 (378)
T ss_pred ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCc-EEEEehhhhhcccCCCCCChhhcccccCCEEEEecCccc-ccCh
Confidence 7899999999999999987 6688999999999 79999997643321 0 1111 1345788899996 6666
Q ss_pred C--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 260 S--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 260 G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
| +|++++++++++. + .... .. ...+.+...+ .++..++.......+.++++++++++.+.+.
T Consensus 232 GlR~G~~~~~~~~i~~-l-~~~~----------~~-~~~~~~~~~q---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 295 (378)
T PRK07682 232 GWRLGFIAAPVYFSEA-M-LKIH----------QY-SMMCAPTMAQ---FAALEALRAGNDDVIRMRDSYRKRRNFFVTS 295 (378)
T ss_pred hhhhhhhhcCHHHHHH-H-HHHH----------Hh-hccCCCHHHH---HHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 7 8999998887775 2 1110 00 0011222222 3334444321012566778888999999999
Q ss_pred HHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 338 LANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 338 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
|.++ ++.+..|++ +.++|..++. .+.+..++.+.|.+++||.+.++..+.. ..++++|
T Consensus 296 L~~~-~~~~~~p~g--~~~~~~~~~~-----~~~~~~~~~~~ll~~~gv~v~pg~~f~~--------------~~~~~iR 353 (378)
T PRK07682 296 FNEI-GLTCHVPGG--AFYAFPSISS-----TGLSSEEFAEQLLLEEKVAVVPGSVFGE--------------SGEGFIR 353 (378)
T ss_pred HHHC-CCccCCCCe--eEEEEEeccC-----CCCCHHHHHHHHHHhCCEEEcCchhhCc--------------CCCCeEE
Confidence 9887 776655544 5677776631 1346678888876556999987665421 2357999
Q ss_pred ecccccCCHHHHHHHHHHHHHHHhc
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
||++. +.+++++.+++|+++++.
T Consensus 354 is~~~--~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 354 CSYAT--SLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred EEeCC--CHHHHHHHHHHHHHHHhh
Confidence 99985 688999999999998754
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=230.27 Aligned_cols=343 Identities=13% Similarity=0.110 Sum_probs=234.8
Q ss_pred CCCCeEEeccCC-CCC-CcHHHHHHHHHHHHHHhc-CCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGS-FGS-CPKSVLADQQKWQLKFLQ-QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~-~~~-~p~~v~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.++.+++|..+. ++. .++.+.+++.+.+..... .+......+..++.+++++.++++++.+ +++++|+| ++++.
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~--~~i~~tsG-~~a~~ 116 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTE--DAILYSSC-FDANG 116 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCC--cEEEEcCh-HHHHH
Confidence 577889998765 453 577799998888765321 1111112344677889999999999985 67777776 77888
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceE
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
.++.++ +++||+|+++++.|+++...+.. .|.++..++ ..+ .+++++.++.......+++
T Consensus 117 ~~~~~l--------~~~gd~vi~~~~~~~~~~~~~~~----~~~~~~~~~----~~d----~~~l~~~i~~~~~~~~~~~ 176 (397)
T PRK06939 117 GLFETL--------LGKEDAIISDALNHASIIDGVRL----CKAKRYRYA----NND----MADLEAQLKEAKEAGARHK 176 (397)
T ss_pred HHHHHh--------CCCCCEEEEEhhhhHHHHHHHHh----cCCceEEeC----CCC----HHHHHHHHHhhhccCCCCe
Confidence 887765 58999999999999998766543 477777663 222 4666666643111123788
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc------cccc--cCccEEEEcCcccCcCCCCcEEE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI------DVKE--IGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~------~~~~--~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
+|+..+..|++|...++++|.++|++||+ ++|+|++|+.|.... .... .++|++++|+||++.|++| |++
T Consensus 177 ~v~~~~v~~~~G~~~~~~~l~~la~~~~~-~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~-G~v 254 (397)
T PRK06939 177 LIATDGVFSMDGDIAPLPEICDLADKYDA-LVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASG-GYT 254 (397)
T ss_pred EEEEecCcCCCCCcCCHHHHHHHHHHhCC-EEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCc-eEE
Confidence 99988899999999999999999999999 799999997654321 1111 1468999999999767764 999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. +. .... ...+.++++...+.++.++++++.. .+.++++++++++++.+.|.+. ++
T Consensus 255 ~~~~~~~~~-l~-~~~~---------~~~~~~~~~~~~~~a~~~al~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~ 318 (397)
T PRK06939 255 AGRKEVIDW-LR-QRSR---------PYLFSNSLAPAIVAASIKVLELLEE----SDELRDRLWENARYFREGMTAA-GF 318 (397)
T ss_pred EeCHHHHHH-HH-HhCc---------cccccCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 888877765 21 1100 0001122222233444455666542 2567888899999999999876 66
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
++..+. +.++.+.++ ...+..++++.|.++ ||.+.....+.. ....+++|++++.++
T Consensus 319 ~~~~~~---~~~~~~~~~------~~~~~~~~~~~L~~~-gI~v~~~~~~~~-------------~~~~~~iRi~~~~~~ 375 (397)
T PRK06939 319 TLGPGE---HPIIPVMLG------DAKLAQEFADRLLEE-GVYVIGFSFPVV-------------PKGQARIRTQMSAAH 375 (397)
T ss_pred CcCCCC---CCEEEEEEC------CHHHHHHHHHHHHHC-CceEeeeCCCCC-------------CCCCceEEEEECCCC
Confidence 654432 345544443 234677899999876 999864322111 122468999999889
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++|+++++++|+++++.
T Consensus 376 ~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 376 TKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998864
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=229.78 Aligned_cols=330 Identities=13% Similarity=0.078 Sum_probs=232.2
Q ss_pred CCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 23 CISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
......++++|.. ..++.|+.+... ..|+.+.+++.+.+.... +.+..+..+++++++++++++ +++|
T Consensus 16 ~~~~~~~~~~~~~--~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~--------~~p~~g~~~lr~~ia~~~~~~-~~~i 84 (359)
T PRK03158 16 GKSIEEVKREYGL--EKIVKLASNENPYGPSPKVKEAIAAHLDELA--------LYPDGYAPELRTKVAKHLGVD-EEQL 84 (359)
T ss_pred CCCHHHHHHhcCC--CceEEecCCCCCCCCCHHHHHHHHHHHHHhh--------cCCCCcHHHHHHHHHHHhCCC-HHHE
Confidence 3456667777764 377888665443 246668998887665432 122345788999999999996 7899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++|+|+++++..++.++ +++||+|++++|+|+..... +...|.++..+++. + +.+ ++.+++.
T Consensus 85 ~~t~G~~~~l~~~~~~~--------~~~gd~v~~~~p~y~~~~~~----~~~~g~~~~~~~~~----~-~~~d~~~l~~~ 147 (359)
T PRK03158 85 LFGAGLDEVIQMISRAL--------LNPGTNTVMAEPTFSQYRHN----AIIEGAEVREVPLK----D-GGHDLEAMLKA 147 (359)
T ss_pred EECCCHHHHHHHHHHHH--------hCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEEecC----C-CCcCHHHHHHh
Confidence 99999999999998876 47899999999999876444 35569999999652 2 233 7888887
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCc----cc--c-ccccCccEEEEcC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSI----KI--D-VKEIGADFYVSNL 251 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~----~~--~-~~~~~~d~~~~s~ 251 (452)
+ .+++++|++++|+||||.++|.++|.++++. +|+ ++|+|+++..... +. . ....+..+++.|+
T Consensus 148 ~------~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 220 (359)
T PRK03158 148 I------DEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHV-LVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTF 220 (359)
T ss_pred c------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCc-EEEEECchHhhcCCcccccHHHHHHhcCCEEEEEec
Confidence 7 5688999999999999999999999999887 589 7999999854321 11 1 1122346788899
Q ss_pred cccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 252 HKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
+|. +|++| +|++++++++++. + ..... . ...+...+.++..+++.. . -.+.+++..++
T Consensus 221 SK~-~g~~GlRiG~~v~~~~~~~~-~-~~~~~-----------~--~~~~~~~q~~~~~~l~~~-~---~~~~~~~~~~~ 280 (359)
T PRK03158 221 SKA-YGLAALRVGYGIASEELIEK-L-NIARP-----------P--FNTTRIAQYAAIAALEDQ-A---FLKECVEKNAE 280 (359)
T ss_pred hHh-hcCcchhhehhcCCHHHHHH-H-HHhcC-----------C--CCCCHHHHHHHHHHhcCH-H---HHHHHHHHHHH
Confidence 995 77677 5999988877765 2 11100 0 112223333333333211 1 24555666777
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
.++.+.+.|.+. ++.+.. +. +.++|+.++ .+..++.+.|.+ +||.+.++..+
T Consensus 281 ~~~~~~~~l~~~-~~~~~~-~~--g~~i~~~~~--------~~~~~~~~~l~~-~gv~v~~g~~f--------------- 332 (359)
T PRK03158 281 GLEQYYAFCKEY-GLFYYP-SQ--TNFIFVDTG--------RDANELFEALLK-KGYIVRSGAAL--------------- 332 (359)
T ss_pred HHHHHHHHHHHC-CCeeCC-Cc--CcEEEEECC--------CCHHHHHHHHHH-CCeEEeeCCCC---------------
Confidence 788888888776 665543 33 567887763 246788898876 59999876544
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
..++++||+++ +.+|+++++++|+++
T Consensus 333 -~~~~~iRi~~~---~~~~~~~l~~al~~~ 358 (359)
T PRK03158 333 -GFPTGVRITIG---LKEQNDKIIELLKEL 358 (359)
T ss_pred -CCCCeEEEecC---CHHHHHHHHHHHHHh
Confidence 12479999988 899999999999875
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=233.22 Aligned_cols=372 Identities=16% Similarity=0.163 Sum_probs=236.3
Q ss_pred CCHHHHHhhhccC---CC--CeEEeccCC-CCCCcHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHHHHHHhHhCC
Q 012991 24 ISEAEIRDEFSHH---QH--GVARINNGS-FGSCPKSVLADQQKWQLKFLQQPDD--FYFNSLRKGILESRAAVKDLINA 95 (452)
Q Consensus 24 ~~~~~ir~~~~~~---~~--~~~~l~~~~-~~~~p~~v~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~ 95 (452)
++..++.+++..+ .. ..-++..|. ....|+.+.+++.+.......+|-. ....+..+...++++.+++++|.
T Consensus 49 ~se~~~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~ 128 (481)
T PRK04366 49 VSELEVVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGM 128 (481)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCC
Confidence 6766666665431 11 123556553 3367777888887652222222221 12345667889999999999999
Q ss_pred CCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC----EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH
Q 012991 96 DDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND----TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE 171 (452)
Q Consensus 96 ~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~----~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~ 171 (452)
+ .. .++.++|+.+....+..+ +.+ ..++|+ +|++++++|+++...+ ...|++++.+++ +.++
T Consensus 129 ~-~~-~l~~~~GA~a~~~~l~~~-r~~---~~~~Gd~~~~~Vlv~~~~hp~~~~~~----~~~G~~vv~v~~----~~~~ 194 (481)
T PRK04366 129 D-AV-TLQPAAGAHGELTGLLMI-RAY---HEARGDTKRTEVIVPDSAHGTNPASA----AMAGFKVVEIPS----NEDG 194 (481)
T ss_pred C-ce-EEEeCcHHHHHHHHHHHH-HHH---hhccCcCCCCEEEEcCCccHhHHHHH----HHcCCEEEEeec----CCCC
Confidence 6 23 333334433333222111 100 134454 9999999999987654 456999999954 3334
Q ss_pred HH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc-ccHHHHHHHHHHcCCCEEEEecccccCCc-cccccccCccEEE
Q 012991 172 EI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV-IPVRKLVKICRDEGVDQVFVDAAHAMGSI-KIDVKEIGADFYV 248 (452)
Q Consensus 172 ~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~-~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~~~~~~~~d~~~ 248 (452)
.+ +++|++.+ ++++++|++++++ ++|.+ .|+++|+++|+++|+ +++||++++.+.. ..+...+++|+++
T Consensus 195 ~~D~e~L~~~i------~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~ga-l~iVD~a~~~~~~g~~~~~~~GaD~~~ 266 (481)
T PRK04366 195 LVDLEALKAAV------GEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGG-LLYYDGANLNAILGKARPGDMGFDVVH 266 (481)
T ss_pred CcCHHHHHhhc------ccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCC-EEEEEecChhhhcccCCccccCCCEEE
Confidence 45 89999988 5789999999987 89987 589999999999999 7999999986633 2456678999999
Q ss_pred EcCcccCcCC-----CCcEEEEEecCccccCCCCCceeccCCCCcc--------cccccccccCccccccHHHHHHHHHH
Q 012991 249 SNLHKWFFCP-----PSVAFLYCRKSILSSDMHHPVVSHEFGNGLP--------IESAWIGTRDYSAQLVIPSAVTFVSR 315 (452)
Q Consensus 249 ~s~~K~l~g~-----~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~al~~~~~ 315 (452)
+++|||+++| +|+|++++++++... + .+......+.... ..+...++.+. ..+..+..++..
T Consensus 267 ~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~-l-p~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~---l~~~~a~~~l~~ 341 (481)
T PRK04366 267 LNLHKTFSTPHGGGGPGSGPVGVKEELAPF-L-PVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNF---GVLVRAYAYIRS 341 (481)
T ss_pred EechhhcCCCCCCCCCCeeeeeehhhhHhh-C-CCCeeeccCCceeecccccccCCCcccccCch---HHHHHHHHHHHH
Confidence 9999998755 446799999887775 3 2221100111110 01112222222 333445555554
Q ss_pred h-hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 316 F-EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 316 ~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
+ .+|++++.++...+++++++.|.++..+. .+. .....+.|..+.- .. .+.+..++.+.|.+ .||.++....+
T Consensus 342 ~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~--~~~-~~~~~~~~~~~~~-~~-~g~~~~~v~~~L~~-~Gi~~~~~~~p 415 (481)
T PRK04366 342 LGAEGLREVSEDAVLNANYLKARLKDIYDLP--YDR-PCMHEFVLSGKKL-KE-TGVRTLDIAKRLLD-YGFHPPTIYFP 415 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCccc--CCC-CeeEEEEEECccc-cc-cCCCHHHHHHHHHH-CCccCCccccc
Confidence 4 12566767778889999999999873332 221 1122233433200 00 13467889999976 49987633222
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
....+.+|+|++.++|.+|||+++++|+++.++.
T Consensus 416 ---------------~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~ 449 (481)
T PRK04366 416 ---------------LIVPEALMIEPTETESKETLDAFIAAMKQIAEEA 449 (481)
T ss_pred ---------------cccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 1224689999999999999999999999997653
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=231.00 Aligned_cols=350 Identities=14% Similarity=0.106 Sum_probs=235.6
Q ss_pred CCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCCcEEEecC
Q 012991 37 QHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVGEISLVDN 106 (452)
Q Consensus 37 ~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~i~~t~g 106 (452)
++.+++|+.|.+. +.|+.+.+++.+.+... ....|....+..++|++++++++.. ++++|++|+|
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~-----~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G 125 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSG-----KYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAG 125 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcC-----cCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCC
Confidence 5689999998763 55677888888766431 1112334456788899999988531 3689999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
+++|+.+++.++ .++||+|++++|.|+..... +...|.+++.+++. .++...+ ++.+++.+
T Consensus 126 ~~~al~l~~~~l--------~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~~~~~~~~--~~~~~~~d~~~l~~~~---- 187 (430)
T PLN00145 126 CAQAIEIIMSVL--------AQPGANILLPRPGYPLYEAR----AVFSGLEVRHFDLL--PERGWEVDLEGVEALA---- 187 (430)
T ss_pred HHHHHHHHHHHh--------cCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeeCC--cccCCcCCHHHHHHHh----
Confidence 999999999987 48999999999999875443 34468999988652 1223344 88999888
Q ss_pred cCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---c-cc---ccccCccEEEEcCcccC
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---K-ID---VKEIGADFYVSNLHKWF 255 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~-~~---~~~~~~d~~~~s~~K~l 255 (452)
.++++++++++|+||||.++| +++|+++|+++|+ ++|+|++++.... + .. +......+++.|++|.
T Consensus 188 --~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i-~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~- 263 (430)
T PLN00145 188 --DENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGI-LVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKR- 263 (430)
T ss_pred --CcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeccchhhccCCCCccchhhhcccCcEEEEeccccc-
Confidence 578999999999999999998 6678888999999 7999999764221 1 11 1112245788899995
Q ss_pred cCCCC--cEEEEEe-c-CccccC-CCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 256 FCPPS--VAFLYCR-K-SILSSD-MHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 256 ~g~~G--~G~l~~~-~-~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
++.+| +|++++. + .++... +....... .. ....++...+.++..+++.-. ..-++..++.+++.
T Consensus 264 ~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~ 332 (430)
T PLN00145 264 WVVPGWRLGWIATCDPNGILKETKVVDSIRNY--------LN-ISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKET 332 (430)
T ss_pred cCCCCeeEEEEEEecchhhhhhhHHHHHHHHH--------hc-ccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHH
Confidence 77788 8888873 2 332210 00000000 00 001122333333333433201 11366777788888
Q ss_pred HHHHHHHHHHHcCCCcC-CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLG-SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
++.+.+.|.+++++... .|.+ ++++|+.++.... .+..+..+++..|.++.||.+.++..+
T Consensus 333 ~~~~~~~L~~~~g~~~~~~P~g--a~y~~v~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pG~~f--------------- 394 (430)
T PLN00145 333 ADICYEKIKEIKCITCPHKPEG--SMFVMVKLDLSCL-SGIKDDMDFCCKLAKEESVVVLPGSAL--------------- 394 (430)
T ss_pred HHHHHHHHhcCCCCCCCcCCCe--eeEEEeccChhhc-CCCCCHHHHHHHHHHhCCEEEeCcccc---------------
Confidence 99999999887777644 3444 7888888752100 001145567766666669999776654
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhcccc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQV 445 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~~ 445 (452)
..++++||++.. +.++++..++.|++++.+..+
T Consensus 395 -g~~~~lRis~~~--~~~~l~~al~rl~~~~~~~~~ 427 (430)
T PLN00145 395 -GMKNWLRITFAI--DPPSLEDGLERLKSFCLRHAK 427 (430)
T ss_pred -CCCCeEEEEeCC--CHHHHHHHHHHHHHHHHHhcc
Confidence 235799999984 788899999999999877544
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=229.35 Aligned_cols=340 Identities=12% Similarity=0.136 Sum_probs=224.5
Q ss_pred CeEEe-ccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhh-hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 39 GVARI-NNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYF-NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 39 ~~~~l-~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
.++.+ ++...+ ..++.+.+++.+.+..+....+.... +...+...++++++++++|.+ +.+++++ |++|+..++
T Consensus 47 ~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~--~~i~~~s-G~~a~~~~i 123 (410)
T PRK13392 47 RVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKE--SALLFTS-GYVSNDAAL 123 (410)
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCC--CEEEECc-HHHHHHHHH
Confidence 34444 433334 34667999998887765322222111 223345779999999999974 5555555 567888888
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.++++ ..+|+.|+++...|.+...++ ...|.++..++ .++ .+.+++.+++.. ++++++|+
T Consensus 124 ~~l~~------~~~g~~vi~~~~~h~s~~~~~----~~~g~~~~~~~----~~d----~~~l~~~l~~~~--~~~t~~v~ 183 (410)
T PRK13392 124 STLGK------LLPGCVILSDALNHASMIEGI----RRSGAEKQVFR----HND----LADLEEQLASVD--PDRPKLIA 183 (410)
T ss_pred HHHhc------CCCCCEEEEehhhhHHHHHHH----HHcCCeEEEEe----CCC----HHHHHHHHHhcc--CCCCEEEE
Confidence 76642 347888888888898876544 44688887763 232 233344443211 35789999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---cc---c--ccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---DV---K--EIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---~~---~--~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
+++++||+|.+.|+++|.++|+++|+ ++++|++|+.|.... .+ . ...+|+++.|++|+ +|..| |+++.+
T Consensus 184 i~~~~n~tG~~~~l~~i~~l~~~~~~-~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~-~g~~G-G~~~~~ 260 (410)
T PRK13392 184 FESVYSMDGDIAPIEAICDLADRYNA-LTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKA-FGCLG-GYIAAS 260 (410)
T ss_pred EeCCCCCCcccccHHHHHHHHHHcCC-EEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHh-hhccc-chhhcC
Confidence 99999999999999999999999999 799999998665321 10 0 11468899999997 55566 788777
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. +. .+... + .+....+...+.++.++++.+... ...+++++++++++.+.|.++ |+++.
T Consensus 261 ~~~~~~-l~-~~~~~-~--------~~s~~~~~~~~~a~~aaL~~~~~~----~~~~~~~~~~~~~l~~~L~~~-g~~~~ 324 (410)
T PRK13392 261 ADLIDF-VR-SFAPG-F--------IFTTALPPAVAAGATAAIRHLKTS----QTERDAHQDRVAALKAKLNAN-GIPVM 324 (410)
T ss_pred HHHHHH-HH-HhCcc-h--------hccCcCCHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence 776663 11 11000 0 011222223455666677766542 344577888899999999886 77765
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
.+. ++++.+.++ +..+..++.+.|.+++||.++....+.. .....++|++++.++|.+
T Consensus 325 ~~~---~~~~~i~~~------~~~~~~~~~~~L~~~~GI~v~~~~~p~~-------------~~~~~~lRis~~~~~t~e 382 (410)
T PRK13392 325 PSP---SHIVPVMVG------DPTLCKAISDRLMSEHGIYIQPINYPTV-------------PRGTERLRITPTPLHDDE 382 (410)
T ss_pred CCC---CCEEEEEeC------CHHHHHHHHHHHHHhCCEEEeeeCCCCC-------------CCCCceEEEEECCCCCHH
Confidence 432 455555543 2335678888886546999975433211 123468999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 012991 428 DYEKFRDAVILLVEE 442 (452)
Q Consensus 428 di~~l~~~l~~~~~~ 442 (452)
|+++++++|+++.++
T Consensus 383 did~l~~aL~~~~~~ 397 (410)
T PRK13392 383 DIDALVAALVAIWDR 397 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-27 Score=231.31 Aligned_cols=339 Identities=13% Similarity=0.115 Sum_probs=233.1
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChhH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t~ 109 (452)
+.+++.|+.|.++ +.|+.+.+++.+.+.. .. ..|....+..++|+++++++ +.+ +++ +|++|+|+++
T Consensus 53 ~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~----~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~ 126 (413)
T PLN00175 53 KHGAINLGQGFPNFDGPDFVKEAAIQAIRD----GK--NQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTE 126 (413)
T ss_pred cCCeEecCCCCCCCCCCHHHHHHHHHHHhc----CC--CCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHH
Confidence 4679999998887 4467788888777643 11 12334445666777777766 432 245 7999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ +++||+|++++|.|......+ +..|.+++.+++.. + +..+ ++.|++.+ .
T Consensus 127 al~~~~~~l--------~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~--~-~~~~~~~~l~~~~------~ 185 (413)
T PLN00175 127 AIAATILGL--------INPGDEVILFAPFYDSYEATL----SMAGAKIKTVTLRP--P-DFAVPEDELKAAF------T 185 (413)
T ss_pred HHHHHHHHh--------CCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEECCc--c-cCCCCHHHHHHhc------C
Confidence 999999876 589999999999998765554 44699999997631 1 1334 78899988 5
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc---c---cccc-cCccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK---I---DVKE-IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~---~~~~-~~~d~~~~s~~K~l~g~ 258 (452)
+++++|++++++||||.+++ +++|+++|++|++ ++|+|+++...... . .+.. .+..+++.|++|. ++.
T Consensus 186 ~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~-~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~-~~~ 263 (413)
T PLN00175 186 SKTRAILINTPHNPTGKMFTREELELIASLCKENDV-LAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKT-FSL 263 (413)
T ss_pred cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCc-EEEEecccCccccCCcccChhhCCCCcCcEEEEecchhh-ccC
Confidence 67899999999999999987 5578889999999 79999998643221 1 1111 1345788899996 666
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|+++++++++.. + .... .....+.+...+.++..+++.... -++..+++++++++.+.+
T Consensus 264 ~G~RiG~~v~~~~l~~~-l-~~~~-----------~~~~~~~s~~~Q~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~~ 327 (413)
T PLN00175 264 TGWKIGWAIAPPHLTWG-V-RQAH-----------SFLTFATATPMQWAAVAALRAPES---YYEELKRDYSAKKDILVE 327 (413)
T ss_pred cchheeeeEeCHHHHHH-H-HHHH-----------hhccCCCCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHH
Confidence 66 8999988877764 1 1110 000012233333333334332111 256778888899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChh-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGED-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
.|.+. ++.+..|.+ ++++|+.++. .+. +..++++.|.+++||.+.++..+...+ ....++
T Consensus 328 ~L~~~-g~~~~~p~g--~~f~~~~~~~-----~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~-----------~~~~~~ 388 (413)
T PLN00175 328 GLKEV-GFKVYPSSG--TYFVMVDHTP-----FGFENDIAFCEYLIEEVGVAAIPPSVFYLNP-----------EDGKNL 388 (413)
T ss_pred HHHHC-CCeecCCCe--eEEEEEeccc-----cCCCCHHHHHHHHHHhCCEEEeCchHhCCCC-----------CCCCCE
Confidence 99886 777665544 6678887631 122 457888888766799987665442110 123469
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHh
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+||+++. ++++++..+++|++.++
T Consensus 389 iRls~~~--~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 389 VRFAFCK--DEETLRAAVERMKTKLK 412 (413)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 9999984 78999999999998875
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=229.98 Aligned_cols=353 Identities=11% Similarity=0.114 Sum_probs=238.2
Q ss_pred CCCCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhcCCc-hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGSF-G-SCPKSVLADQQKWQLKFLQQPD-DFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.++.+++|..+.+ + ..++.+.+++.+.+..+..... ....+...+...+++++|+++++.+ +.+++++|++ ++.
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~--~~i~~s~G~~-a~~ 183 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTP--DSILYSYGLS-TIF 183 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCC--CEEEECCHHH-HHH
Confidence 4566788875543 3 4577799999998877533211 1123566788999999999999985 7888888776 667
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccC---CC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKD---GK 189 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~---~~ 189 (452)
.++.++ .++||.|+++...|.+...++. ..+.+++.+ +.++.. .++..+++.... .+
T Consensus 184 sai~a~--------~~~gd~Ii~d~~~H~s~~~~~~----ls~~~~~~~----~~nd~~----~l~~~l~~~~~~~~~~~ 243 (481)
T PLN02822 184 SVIPAF--------CKKGDIIVADEGVHWGIQNGLY----LSRSTIVYF----KHNDME----SLRNTLEKLTAENKRKK 243 (481)
T ss_pred HHHHHh--------CCCCCEEEEeCCccHHHHHHHH----HcCCeEEEE----CCCCHH----HHHHHHHHHhhhhcccC
Confidence 777766 5889999999888887755543 347888888 444432 222222211100 13
Q ss_pred ce-EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---------ccccccCccEEEEcCcccCcCCC
Q 012991 190 MI-RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---------IDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 190 ~~-~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
++ ++|+++.+++++|.+.|+++|+++|++||+ ++|+|++|++|... +++....+|+++.|++|. +|+.
T Consensus 244 ~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~-~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKa-lg~~ 321 (481)
T PLN02822 244 KLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRF-RVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHA-LATE 321 (481)
T ss_pred CCcEEEEEecCCCCCCCccCHHHHHHHHHHcCC-EEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhh-hhhC
Confidence 44 799999999999999999999999999999 89999999976542 122222579999999997 6777
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
| |++++++++++. +. .. . ....+.++.+.....+..++++.+.. .+.++++++++++++++.|.
T Consensus 322 G-G~i~g~~~ii~~-~~-~~-~--------~~~~fsa~lPp~~~~Aa~~aL~~l~~----~~~~~~~l~~~~~~l~~~L~ 385 (481)
T PLN02822 322 G-GFCTGSARVVDH-QR-LS-S--------SGYVFSASLPPYLASAAITAIDVLED----NPSVLAKLKENIALLHKGLS 385 (481)
T ss_pred C-eEEEcCHHHHHH-HH-hc-C--------CceeeccccCHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHH
Confidence 7 898888887765 11 00 0 00111122222223333346655542 25678889999999999999
Q ss_pred HHcCCCcCCCcccccceEEEEcCCcccc--CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 340 NAWGTSLGSPPEICAAMVMVGLPSRLRV--MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
++.|+.+..+.. ++++++.+++..+. .+.....++++.|.++.||.+.....+.... ...+..+|
T Consensus 386 ~~~g~~~~~~~~--spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~-----------~~~~~~lR 452 (481)
T PLN02822 386 DIPGLSIGSNTL--SPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDK-----------CRLPVGIR 452 (481)
T ss_pred hcCCcccCCCCC--CCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCC-----------CCCCCcEE
Confidence 877777655444 77888877531010 0111246788888745699996542221100 11245799
Q ss_pred ecccccCCHHHHHHHHHHHHHHHhc
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++..+|++||++++++|++++..
T Consensus 453 i~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 453 LFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHH
Confidence 9999888999999999999998754
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=231.15 Aligned_cols=343 Identities=13% Similarity=0.124 Sum_probs=231.5
Q ss_pred CCCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------------CCCC
Q 012991 36 HQHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------------ADDV 98 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~ 98 (452)
.+++++.|+.|.+. .+|+.+.+++.+.+.. . ....|....+..++|++++++++ ++ +
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~----~-~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~-~ 104 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS----Q-ECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIK-K 104 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc----C-CCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCC-h
Confidence 67889999998876 3577788888776542 1 11223334457788888888875 43 6
Q ss_pred CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHH
Q 012991 99 GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l 177 (452)
++|++|+|+++++.+++.++ +++||+|+++.|+|...... +...|++++.+++. .++.+.+ ++++
T Consensus 105 ~~i~it~G~~~al~~~~~~~--------~~~gd~vlv~~P~y~~~~~~----~~~~g~~~~~i~~~--~~~~~~~d~~~l 170 (412)
T PTZ00433 105 DNVVLCSGVSHAILMALTAL--------CDEGDNILVPAPGFPHYETV----CKAYGIEMRFYNCR--PEKDWEADLDEI 170 (412)
T ss_pred hhEEEeCChHHHHHHHHHHh--------cCCCCEEEEccCCcccHHHH----HHHcCCEEEEEecC--ccccCcCCHHHH
Confidence 89999999999999999976 58999999999999886544 45569999999652 1222334 8889
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---c-c---cccccCccEE
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---K-I---DVKEIGADFY 247 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~-~---~~~~~~~d~~ 247 (452)
++.+ .+++++|++++++||||.+++ +++|+++|+++|+ ++|+|+++..... . . .+......++
T Consensus 171 ~~~~------~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~ 243 (412)
T PTZ00433 171 RRLV------DDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRL-PLISDEIYAGMVFNGATFTSVADFDTTVPRVI 243 (412)
T ss_pred HHHh------ccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCC-eEEEeccccccccCCCCccchhhccCCCceEE
Confidence 8888 467899999999999999987 5567888999999 7999999863221 1 1 1111112467
Q ss_pred EEcCcccCcCCCC--cEEEEEe-c-----CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhc
Q 012991 248 VSNLHKWFFCPPS--VAFLYCR-K-----SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEG 318 (452)
Q Consensus 248 ~~s~~K~l~g~~G--~G~l~~~-~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~ 318 (452)
+.|++|. +|.+| +|++++. + +++.. + ... ... ....+...+.++..++.. ...
T Consensus 244 ~~SfSK~-~~~pGlRlG~~i~~~p~~~~~~~~~~-~-~~~-----------~~~-~~~~~~~~q~a~~~~l~~~~~~--- 305 (412)
T PTZ00433 244 LGGTAKN-LVVPGWRLGWLLLVDPHGNGGDFLDG-M-KRL-----------GML-VCGPCSVVQAALGEALLNTPQE--- 305 (412)
T ss_pred Eccchhh-cCCCCeeEEEEEEeCCcccHHHHHHH-H-HHH-----------hhc-cCCCChHHHHHHHHHHhcCcHH---
Confidence 7899995 66666 8888862 2 22222 1 000 000 011222222222223221 111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCC
Q 012991 319 GIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD 398 (452)
Q Consensus 319 g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~ 398 (452)
-++.+++++++.++.+.+.|.+..++.+..|++ ++++|+.++.... .+..+..++.+.|.+++||.+..+..+
T Consensus 306 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~g--g~f~~~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pg~~f---- 378 (412)
T PTZ00433 306 HLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRG--SMFLMSRLDLEKF-RDIKSDVEFYEKLLEEENVQVLPGEIF---- 378 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCe--eEEEEEEechhhc-CCCCCHHHHHHHHHHhcCEEEeCcccc----
Confidence 356677778888888989888765666555554 7788888862100 001245688888875569999766554
Q ss_pred CCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 399 GQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 399 ~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
..++++|++++. ..+++++.++.|+++++...
T Consensus 379 ------------~~~~~iRis~~~--~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 379 ------------HMPGFTRLTISR--PVEVLREAVERIKAFCERHK 410 (412)
T ss_pred ------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence 125799999985 57889999999999887543
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=231.10 Aligned_cols=335 Identities=14% Similarity=0.120 Sum_probs=223.0
Q ss_pred CCCCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChh
Q 012991 36 HQHGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t 108 (452)
.+.+++.|+.+.+.. .|..+.+++...+.. + ....|....+..++|+++++++ +.+ +++ .+++|+|++
T Consensus 33 ~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~----~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~ 107 (394)
T PRK05942 33 QGLDLIDLGMGNPDGAAPQPVIEAAIAALAD----P-QNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSK 107 (394)
T ss_pred cCCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----C-CCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChH
Confidence 456789999877663 455567766554421 1 1123444455667888888876 432 255 588999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+++..++.++ +++||+|++++|+|+.+...+. ..|.+++.++++ .+....+ ++++++.+
T Consensus 108 ~al~~~~~~~--------~~~gd~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~--~~~~~~~d~~~l~~~~------ 167 (394)
T PRK05942 108 EGLTHLALAY--------VNPGDVVLVPSPAYPAHFRGPL----IAGAQIYPIILK--PENDWLIDLSSIPEEV------ 167 (394)
T ss_pred HHHHHHHHHh--------CCCCCEEEEcCCCCcchHHHHH----HcCCEEEEeecC--CccCCccCHHHHHHhc------
Confidence 9999999876 5899999999999998755543 458999998652 1122234 88898888
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccc---ccc-cCccEEEEcCcccCc
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KID---VKE-IGADFYVSNLHKWFF 256 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~---~~~-~~~d~~~~s~~K~l~ 256 (452)
.+++++|++++|+||||.+++ +++|.++|+++|+ ++|+|++++.... ... +.. .+..+++.|++|. +
T Consensus 168 ~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~-~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~-~ 245 (394)
T PRK05942 168 AQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEI-MLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKT-Y 245 (394)
T ss_pred cccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCe-EEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhc-c
Confidence 568999999999999999998 6678889999999 7999999753221 111 111 1234677899995 6
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|.+| +|+++.++++++. + ..... ....+.+...+.++..+++...+ ..+.++++++++++.+
T Consensus 246 ~~~GlRiG~i~~~~~l~~~-l-~~~~~-----------~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 309 (394)
T PRK05942 246 NMAGWRVGFVVGNRHIIQG-L-RTLKT-----------NLDYGIFSALQKAAETALQLPDS---YLQQVQERYRTRRDFL 309 (394)
T ss_pred CChhhheeeeecCHHHHHH-H-HHHHh-----------hcccCCCHHHHHHHHHHHhCcHH---HHHHHHHHHHHHHHHH
Confidence 6666 8999988877765 2 11100 00012222334444445543333 4677788888889999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|.+. ++.+..+.. +.++|+.++ ...+..++...+.+++||.+.++..+.. ..++
T Consensus 310 ~~~L~~~-~~~~~~~~~--~~f~~~~~~------~~~~~~~~~~~~l~~~gV~v~~g~~f~~--------------~~~~ 366 (394)
T PRK05942 310 IQGLGEL-GWNIPPTKA--TMYLWVPCP------VGMGSTDFALNVLQKTGVVVTPGNAFGE--------------GGEG 366 (394)
T ss_pred HHHHHHC-CCeecCCCe--eeEEEEECC------CCCCHHHHHHHHHHHCCEEEeCChhhCc--------------CCCC
Confidence 9999876 666655433 568889886 2445667776655557999976654421 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++|+++.. +. +++.++|+++.+
T Consensus 367 ~iRis~~~--~~---~~l~~~l~~l~~ 388 (394)
T PRK05942 367 YVRISLIA--DC---DRLGEALDRLKQ 388 (394)
T ss_pred eEEEEecC--CH---HHHHHHHHHHHH
Confidence 99999962 33 455555555443
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-27 Score=228.14 Aligned_cols=317 Identities=12% Similarity=0.092 Sum_probs=221.5
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
++.++|+.+..+ +.|+.+.+++.+...... .|++ . ...++|+.+++++|++ +++|++|+|+++++.+++.
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-----~Y~~--~-~~~~Lr~aia~~~~v~-~e~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALSG-----RYDL--E-LEDDLRTLFAAQEGLP-ADHVMAYAGSSEPLNYAVL 113 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHhc-----CCCC--c-hHHHHHHHHHHHhCcC-hhhEEEcCChHHHHHHHHH
Confidence 467899888765 567779999887654321 1221 2 2778999999999996 8999999999999999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++ +++||+|++++|+|..+... ++..|.+++.++. +.++.+ ++.+++.. +++++|+
T Consensus 114 ~l--------~~~gd~Vli~~P~y~~~~~~----~~~~g~~~~~v~~----~~~~~~d~~~l~~~~-------~~~~~v~ 170 (370)
T PRK09105 114 AF--------TSPTAGLVTADPTYEAGWRA----ADAQGAPVAKVPL----RADGAHDVKAMLAAD-------PNAGLIY 170 (370)
T ss_pred HH--------cCCCCEEEEeCCChHHHHHH----HHHcCCeEEEecC----CCCCCCCHHHHHhcC-------CCCCEEE
Confidence 77 57899999999999887554 4556999999854 222333 66666542 4688999
Q ss_pred EeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCC-cc--ccccccCcc-EEEEcCcccCcCCCC--cEEEEEe
Q 012991 196 IDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGS-IK--IDVKEIGAD-FYVSNLHKWFFCPPS--VAFLYCR 267 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~-~~--~~~~~~~~d-~~~~s~~K~l~g~~G--~G~l~~~ 267 (452)
+++|+||||.+++.++|.++++. +++ ++|+|+++.... .+ .++.....+ +++.|++|+ +|++| +|+++.+
T Consensus 171 l~nP~NPTG~~~~~~~l~~l~~~~~~~~-~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~-~g~~GlRiG~~v~~ 248 (370)
T PRK09105 171 ICNPNNPTGTVTPRADIEWLLANKPAGS-VLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKL-YGMAGMRLGLAAAR 248 (370)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHhCCCCc-EEEEECchHHhccCcchHHHHhhCCCEEEEecccHh-hcCCccceeeeecC
Confidence 99999999999999988887754 489 799999984211 11 122112234 566799995 88888 8999988
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + ... . ....+...+.+..+++.. .. -.+..+++++++++.+.+.|.+. ++.+.
T Consensus 249 ~~~i~~-l-~~~-~-------------~~~~~~~~~~aa~~~L~~-~~---~~~~~~~~~~~~r~~l~~~L~~~-g~~~~ 307 (370)
T PRK09105 249 PDLLAK-L-ARF-G-------------HNPLPVPAAAAGLASLRD-PK---LVPQRRAENAAVREDTIAWLKKK-GYKCT 307 (370)
T ss_pred HHHHHH-H-Hhc-C-------------CCCcCHHHHHHHHHHHhC-HH---HHHHHHHHHHHHHHHHHHHHHHC-CCCcC
Confidence 877765 2 111 0 012222222222233322 11 35666778888899999999886 77665
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
.+. ++++++.++ .+..++.+.|.++ ||.+...+ . ..++++|++++ +++
T Consensus 308 ~~~---~~f~~~~~~--------~~~~~l~~~L~~~-gI~v~~~~-~----------------~~~~~~Ris~~---~~~ 355 (370)
T PRK09105 308 PSQ---ANCFMVDVK--------RPAKAVADAMAKQ-GVFIGRSW-P----------------IWPNWVRVTVG---SEE 355 (370)
T ss_pred CCC---CcEEEEeCC--------CCHHHHHHHHHHC-CcEEecCC-C----------------CCCCeEEEEcC---CHH
Confidence 433 456566553 2557899999775 99984322 1 22579999998 789
Q ss_pred HHHHHHHHHHHHHh
Q 012991 428 DYEKFRDAVILLVE 441 (452)
Q Consensus 428 di~~l~~~l~~~~~ 441 (452)
++++++++|+++++
T Consensus 356 ~~~~l~~al~~~~~ 369 (370)
T PRK09105 356 EMAAFRSAFAKVMR 369 (370)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998863
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=229.31 Aligned_cols=341 Identities=16% Similarity=0.151 Sum_probs=232.3
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh------CCCCCCcEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI------NADDVGEISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i~~t~g~t 108 (452)
.+..++.|..+.+. +.++.+.+++.+.+.. ... .|....+...+|+.+++++ +++ ++++++|+|++
T Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~--~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~ 101 (393)
T PRK05764 29 QGRDVISLGAGEPDFDTPEHIKEAAIEALDD----GKT--KYTPAAGIPELREAIAAKLKRDNGLDYD-PSQVIVTTGAK 101 (393)
T ss_pred ccCCEEEeCCCCCCCCCCHHHHHHHHHHHhc----CCC--CcCCCCChHHHHHHHHHHHHHHhCCCCC-HHHEEEeCCcH
Confidence 45678899888776 3456777887776542 111 2333445678888888887 343 68999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+|+..++.++ +++|++|++++|.|......+ +..|.+++.+++. .+....+ ++.+++.+
T Consensus 102 ~a~~~~~~~~--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~~--~~~~~~~d~~~l~~~l------ 161 (393)
T PRK05764 102 QALYNAFMAL--------LDPGDEVIIPAPYWVSYPEMV----KLAGGVPVFVPTG--EENGFKLTVEQLEAAI------ 161 (393)
T ss_pred HHHHHHHHHh--------cCCCCEEEecCCCCcchHHHH----HHcCCEEEEEecC--cccCCcCCHHHHHHhh------
Confidence 9999998876 578999999999998764443 5569999999652 1122233 78899888
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc----cc-----ccccCccEEEEcCcccC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK----ID-----VKEIGADFYVSNLHKWF 255 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~-----~~~~~~d~~~~s~~K~l 255 (452)
.+++++|++++++||||.+++ +++|.++|++|++ ++++|++++..... .. ....+.++++.|++|.
T Consensus 162 ~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~- 239 (393)
T PRK05764 162 TPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDI-WVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKA- 239 (393)
T ss_pred CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCc-EEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCccc-
Confidence 467899999999999999987 6688899999999 79999987643210 11 1122356888899996
Q ss_pred cCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 012991 256 FCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 256 ~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~ 333 (452)
+|++| +|+++.++++++. + .... .......+...+.++..+++.... ..+.++++.+++++.
T Consensus 240 ~~~~G~RiG~i~~~~~~~~~-~-~~~~-----------~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~ 303 (393)
T PRK05764 240 YAMTGWRLGYAAGPKELIKA-M-SKLQ-----------SHSTSNPTSIAQYAAVAALNGPQD---EVEEMRQAFEERRDL 303 (393)
T ss_pred ccCccceeEEEecCHHHHHH-H-HHHH-----------hhcccCCChHHHHHHHHHHcCChH---HHHHHHHHHHHHHHH
Confidence 67666 7898888777665 1 1110 000112222233333333321111 355677778888888
Q ss_pred HHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 334 MARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 334 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
+.+.|.+.+++.+..+.. +.++|+.++.... ..+.++.++.+.|.+++||.+.++..+ ..+
T Consensus 304 l~~~L~~~~g~~~~~~~g--~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~~g~~f----------------~~~ 364 (393)
T PRK05764 304 MVDGLNEIPGLECPKPEG--AFYVFPNVSKLLG-KSITDSLEFAEALLEEAGVAVVPGIAF----------------GAP 364 (393)
T ss_pred HHHHHhhCCCCcccCCCc--ceEEEEecccccc-cccCCHHHHHHHHHHhCCEEEcccccc----------------CCC
Confidence 999998876777665543 5677777762100 001134778887766679999765544 125
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|+|++. +.++++.++++|++++++
T Consensus 365 ~~vRis~~~--~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 365 GYVRLSYAT--SLEDLEEGLERIERFLES 391 (393)
T ss_pred CEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 799999985 799999999999988753
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-26 Score=225.78 Aligned_cols=336 Identities=14% Similarity=0.118 Sum_probs=229.6
Q ss_pred CCCCeEEeccCC-CCC-CcHHHHHHHHHHHHHHhc-CCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGS-FGS-CPKSVLADQQKWQLKFLQ-QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~-~~~-~p~~v~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.++.++.|..+. .+. .++.+.+++.+.+..+.. .+............+++++.++++++.+ ..+++++|++++.
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~---~~i~~~~g~~~~~ 113 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAE---RALLFSSGYAANL 113 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEECcHHHHHH
Confidence 467788787663 353 567799999988865421 1111122334567889999999999863 4455566777777
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceE
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
.++.++ +++||+|+++++.|+++..++. ..|.+++.++ ..+ .+.+++.++.. .+++.
T Consensus 114 ~~l~~~--------~~~gd~V~~~~~~~~~~~~~~~----~~g~~~~~~~----~~d----~~~l~~~i~~~---~~~~~ 170 (385)
T PRK05958 114 AVLTAL--------AGKGDLIVSDKLNHASLIDGAR----LSRARVRRYP----HND----VDALEALLAKW---RAGRA 170 (385)
T ss_pred HHHHHh--------CCCCCEEEEeCccCHHHHHHHH----hcCCceEEeC----CCC----HHHHHHHHHhc---cCCCe
Confidence 666654 5899999999999998776653 3588888874 222 57777777531 12467
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---------cccccCccEEEEcCcccCcCCCCcEE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
+++++++.|++|...++++|.++|++||+ ++|+|++|+.|..+. ++.....++++.|++|+ +|+.| |+
T Consensus 171 lvi~~~~~~~~G~~~~l~~i~~ia~~~~~-~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G-g~ 247 (385)
T PRK05958 171 LIVTESVFSMDGDLAPLAELVALARRHGA-WLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKA-LGSSG-AA 247 (385)
T ss_pred EEEEEecccCCCCcCCHHHHHHHHHHhCC-EEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhh-cccCC-cE
Confidence 88888899999999999999999999999 799999997664321 12222334788999998 46777 78
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
++.++++.+. +. .... .....+.++.....++.++++.+.. . +.+.+++.++++++.+.|.+. +
T Consensus 248 ~~~~~~~~~~-~~-~~~~---------~~~~~~~~~~~~~aa~~aal~~~~~---~-~~~~~~~~~~~~~l~~~L~~~-~ 311 (385)
T PRK05958 248 VLGSETLIDY-LI-NRAR---------PFIFTTALPPAQAAAARAALRILRR---E-PERRERLAALIARLRAGLRAL-G 311 (385)
T ss_pred EEcCHHHHHH-HH-HhCc---------cceecCCCCHHHHHHHHHHHHHHhc---C-HHHHHHHHHHHHHHHHHHHHc-C
Confidence 7777666543 11 0000 0000122233344445556666653 3 567888999999999999876 6
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
+++..+. ++++++.++ +..+..++.+.|.+ .||.+..+..+.. ....+++|++++.+
T Consensus 312 ~~~~~~~---~~~~~~~~~------~~~~~~~~~~~l~~-~gI~v~~~~~~~~-------------~~~~~~lRis~~~~ 368 (385)
T PRK05958 312 FQLMDSQ---SAIQPLIVG------DNERALALAAALQE-QGFWVGAIRPPTV-------------PAGTSRLRITLTAA 368 (385)
T ss_pred CCcCCCC---CCEEEEEeC------CHHHHHHHHHHHHH-CCceEecccCCCC-------------CCCCceEEEEecCC
Confidence 6654432 567888775 23466789999976 4999965322211 11246899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 012991 424 NTLEDYEKFRDAVILL 439 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~ 439 (452)
++++|++++++.|+++
T Consensus 369 ~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 369 HTEADIDRLLEALAEA 384 (385)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999875
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=231.08 Aligned_cols=339 Identities=14% Similarity=0.126 Sum_probs=225.5
Q ss_pred ccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CCCCC-cEEEec
Q 012991 34 SHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--ADDVG-EISLVD 105 (452)
Q Consensus 34 ~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~-~i~~t~ 105 (452)
...++.++.|+.+.+. +.|+.+.+++.+.+.. + ..+.|....+..++|+++++++ | ++ ++ +|++|+
T Consensus 26 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~~I~it~ 99 (388)
T PRK07366 26 RAAGKELIDLSLGSSDLPAPAHALEAIAQSLHD----P-STHGYLLFHGTLDFREAAAQWYEQRFGLAVD-PETEVLPLI 99 (388)
T ss_pred HhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----c-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcCC-CcCeEEECC
Confidence 3356788999887766 4467788888765431 1 1122333455677888888877 4 43 66 699999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKG 184 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~ 184 (452)
|+++++.+++.++ +.+||+|++++|.|+.....+ +..|.+++.+++.. +....+ .+++++.+
T Consensus 100 Gs~~al~~~~~~l--------~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~~--- 162 (388)
T PRK07366 100 GSQEGTAHLPLAV--------LNPGDFALLLDPGYPSHAGGV----YLAGGQIYPMPLRA--ENDFLPVFADIPTEV--- 162 (388)
T ss_pred CcHHHHHHHHHHh--------CCCCCEEEEcCCCCcchHHHH----HhcCCEEEEEECCC--ccCCCCCHHHHHHhh---
Confidence 9999999999976 589999999999998875554 44699999996521 111222 66776666
Q ss_pred ccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCc-----cc---ccccc-CccEEEEcCc
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSI-----KI---DVKEI-GADFYVSNLH 252 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~-----~~---~~~~~-~~d~~~~s~~ 252 (452)
..++++|++++|+||||.+++.+ +|+++|++|++ ++|+|+++..-.. .. +.... ...+++.|++
T Consensus 163 ---~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~-~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfS 238 (388)
T PRK07366 163 ---LAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDL-VLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLS 238 (388)
T ss_pred ---cccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCe-EEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecc
Confidence 45789999999999999999855 56778999999 7999998753221 11 11111 1236778999
Q ss_pred ccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 253 KWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 253 K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
|. +|.+| +|+++.++++++. + ...... . ..++.+. .+.++.+++....+ -++.+++.+++.
T Consensus 239 K~-~g~~GlRiG~~v~~~~li~~-l-~~~~~~-~---------~~~~~~~-~~~~a~~~l~~~~~---~l~~~~~~~~~~ 301 (388)
T PRK07366 239 KS-YNMGGFRIGFAIGNAQLIQA-L-RQVKAV-V---------DFNQYRG-ILNGAIAALTGPQA---TVQQTVQIFRQR 301 (388)
T ss_pred cc-cCCcchhheehcCCHHHHHH-H-HHHHhh-c---------ccCCCHH-HHHHHHHHHhCcHH---HHHHHHHHHHHH
Confidence 96 66666 8999888877765 2 111000 0 0011111 11111222211112 366778888888
Q ss_pred HHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
++.+.+.|.+. ++.+..|.+ ++++|+.++... ..+..++++.|.+++||.+.++..+..
T Consensus 302 r~~l~~~L~~~-~~~~~~p~~--g~f~~~~~~~~~----~~~~~~~~~~l~~~~gv~v~pg~~f~~-------------- 360 (388)
T PRK07366 302 RDAFINALHQI-GWPVPLPEA--TMYVWAKLPEPW----QGNSVEFCTQLVAQTGVAASPGSGFGK-------------- 360 (388)
T ss_pred HHHHHHHHHHC-CCcccCCCe--eEEEEEECCccc----CCCHHHHHHHHHHhCCEEEeCchHhCc--------------
Confidence 99999999876 665544544 789999987210 123567877775556999987655421
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
...+++||+++. +.++++..+++|+++
T Consensus 361 ~~~~~iRi~~~~--~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 361 SGEGYVRFALVH--DPDILEEAVERIAAF 387 (388)
T ss_pred CCCCeEEEEecC--CHHHHHHHHHHHHHh
Confidence 234799999984 688899999988765
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=227.58 Aligned_cols=324 Identities=14% Similarity=0.154 Sum_probs=225.6
Q ss_pred HHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLV 104 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t 104 (452)
....++.+. .+.++.|+.+... ..|+.+.+++.+.+..... | +..+..++|+.++++++++ +++|++|
T Consensus 19 ~~~~~~~~~--~~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~-----Y---p~~g~~~Lr~aia~~~~~~-~~~I~vt 87 (366)
T PRK01533 19 PEQMKEVYG--DHSFVKLASNENPFGCSPRVLDELQKSWLDHAL-----Y---PDGGATTLRQTIANKLHVK-MEQVLCG 87 (366)
T ss_pred hHHHHHhcC--CCceEEeCCCCCCCCCCHHHHHHHHHHHHhcCc-----C---CCCCHHHHHHHHHHHhCCC-cceEEEC
Confidence 334444443 4678899887766 4667788888876543211 2 2334678999999999996 8999999
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
+|+++++.+++.++ +++||+|++++|.|+..... +...|.+++.+++ ++. .+ ++++++++
T Consensus 88 ~Gs~e~i~~~~~~l--------~~~gd~vlv~~P~y~~~~~~----~~~~g~~v~~v~~----~~~-~~d~~~l~~~~-- 148 (366)
T PRK01533 88 SGLDEVIQIISRAV--------LKAGDNIVTAGATFPQYRHH----AIIEGCEVKEVAL----NNG-VYDLDEISSVV-- 148 (366)
T ss_pred CCHHHHHHHHHHHh--------cCCCCEEEEcCCcHHHHHHH----HHHcCCEEEEeec----CCC-CcCHHHHHHHh--
Confidence 99999999999976 58999999999999876554 4556999999954 322 34 89999888
Q ss_pred cccCCCceEEEEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCc------ccc-ccccCccEEEEcCccc
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSI------KID-VKEIGADFYVSNLHKW 254 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~------~~~-~~~~~~d~~~~s~~K~ 254 (452)
.+++++|++++|+||||.+++.+++.++++. .+. ++|+|+++..... .+. +...+-.+++.|++|.
T Consensus 149 ----~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~ 223 (366)
T PRK01533 149 ----DNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKA 223 (366)
T ss_pred ----CcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHH
Confidence 4678999999999999999998777666543 134 4778998752111 011 1112335788899995
Q ss_pred CcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 255 l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
+|.+| +|++++++++++. +. ... .....+...+.++.++++. .. -.+.+++..++.++
T Consensus 224 -~~l~GlRiG~~i~~~~~~~~-l~-~~~-------------~~~~~~~~~q~aa~~~l~~-~~---~~~~~~~~~~~~r~ 283 (366)
T PRK01533 224 -YGLASFRVGYAVGHEELIEK-LN-VVR-------------LPFNVSSLAQKAATIAFGD-DE---FIEEIVRVNTEGLR 283 (366)
T ss_pred -hcChHHHHhHHhCCHHHHHH-HH-Hhc-------------CCCCcCHHHHHHHHHHhCC-HH---HHHHHHHHHHHHHH
Confidence 77777 7998888777765 21 110 0022333333333334322 11 24455666677777
Q ss_pred HHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 333 KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
++.+.++.+ ++++..+. ++|+|+.++ ++.++.+.|.+ +||.|+. +
T Consensus 284 ~~~~~l~~~-g~~~~~~~---~nf~~~~~~---------~~~~~~~~l~~-~GI~Vr~---~------------------ 328 (366)
T PRK01533 284 QYESFCKEN-EIPFYQSQ---TNFIFLPVE---------NGGEIYEACAH-AGFIIRP---F------------------ 328 (366)
T ss_pred HHHHHHHhC-CCccCCCc---CcEEEEeCC---------CHHHHHHHHHH-CCcEEcc---C------------------
Confidence 777777766 67665443 678998875 34578888876 5999974 1
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++||+++ +.+++++++++|+++++.
T Consensus 329 ~~~iRis~~---~~~~~~~l~~al~~~~~~ 355 (366)
T PRK01533 329 PNGVRITVG---TREQNEGVISVLQQHFEN 355 (366)
T ss_pred CCceEEeCC---CHHHHHHHHHHHHHHHHh
Confidence 258999998 899999999999998854
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=241.40 Aligned_cols=346 Identities=17% Similarity=0.131 Sum_probs=226.1
Q ss_pred CCCCeEEeccCCCC----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh------CCCCCCcEEEec
Q 012991 36 HQHGVARINNGSFG----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI------NADDVGEISLVD 105 (452)
Q Consensus 36 ~~~~~~~l~~~~~~----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i~~t~ 105 (452)
.+++++.|+.|.+. +.|+.+.+++.+.+... ..|....+..++|++|++++ +++ +++|++|+
T Consensus 144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~-------~~Y~~~~G~~~lReaia~~~~~~~~~~~~-~~~I~it~ 215 (517)
T PRK13355 144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT-------EGYSDSKGLFSARKAIMQYAQLKGLPNVD-VDDIYTGN 215 (517)
T ss_pred cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcC-------CCCCCCcChHHHHHHHHHHHHhcCCCCCC-hhHEEEeC
Confidence 46789999997773 45777888887765321 12444566889999999998 564 78999999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKG 184 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~ 184 (452)
|+++++.+++.++ +++||+|++++|.|+.....+ ...|.+++.+++. .+.+..+ ++++++.+
T Consensus 216 G~~eal~~~~~~l--------~~~Gd~Vli~~P~y~~y~~~~----~~~g~~~v~~~~~--~~~~~~~d~~~l~~~~--- 278 (517)
T PRK13355 216 GVSELINLSMSAL--------LDDGDEVLIPSPDYPLWTACV----NLAGGTAVHYRCD--EQSEWYPDIDDIRSKI--- 278 (517)
T ss_pred cHHHHHHHHHHHh--------CCCCCEEEEcCCCCcCHHHHH----HHCCCEEEEeecC--cccCCCCCHHHHHHhc---
Confidence 9999999999977 589999999999998865544 4569999888652 1222334 89999988
Q ss_pred ccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC----ccccccccCcc---EEEEcCccc
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKEIGAD---FYVSNLHKW 254 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~~~~d---~~~~s~~K~ 254 (452)
++++++|++++|+||||.+++ +++|+++|++|++ ++|+|+++..-. ....+.....+ +++.|++|.
T Consensus 279 ---~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~-~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~ 354 (517)
T PRK13355 279 ---TSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQL-IIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKS 354 (517)
T ss_pred ---CcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCc-EEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhh
Confidence 678999999999999999998 6788999999999 799999976321 11111111122 334799995
Q ss_pred CcCCCC--cEEEEEe--cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCR--KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 255 l~g~~G--~G~l~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
++.+| +|++++. ++++.. +...... ... .....+...+.++..++........-+... ++..+.
T Consensus 355 -~~~~G~RiG~~i~~~~~~~~~~-~~~~l~~--------~~~-~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~~ 422 (517)
T PRK13355 355 -HMIAGYRIGWMILSGNKRIAKD-YIEGLNM--------LAN-MRLCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQ 422 (517)
T ss_pred -ccCcccceEEEEeeCchhhHHH-HHHHHHH--------Hhc-CcCCcChHHHHHHHHHhcCCccHHHHHHHH-HHHHHH
Confidence 67777 7998854 332211 0000000 000 001223333344444442100000011222 234456
Q ss_pred HHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
++++.+.|.+++++.+..|.+ ++++|+.++.... ...+..+++..+.++.||.+.++..+..
T Consensus 423 r~~l~~~L~~~~g~~~~~p~g--~fy~~~~l~~~~~--~~~~~~~~~~~ll~~~gV~v~pg~~F~~-------------- 484 (517)
T PRK13355 423 RELVYNALNAIPGISAVKPKA--AFYIFPKIDVKKF--NIHDDEQFALDLLHDKKVLIVQGTGFNW-------------- 484 (517)
T ss_pred HHHHHHHHhcCCCcccCCCCe--eeEEEeecCcccC--CCCCHHHHHHHHHHhCCEEEeCcchhCC--------------
Confidence 788888898877887766654 6667767752100 0112334544443456999987665521
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+++. .+.++++..++.|+++++.
T Consensus 485 ~~~~~~Ris~~--~~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 485 DKPDHFRVVYL--PRLEDLEDAMDRLADFFSY 514 (517)
T ss_pred CCcCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 24679999996 4889999999999998864
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=231.89 Aligned_cols=350 Identities=13% Similarity=0.138 Sum_probs=230.4
Q ss_pred HHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cE
Q 012991 29 IRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EI 101 (452)
Q Consensus 29 ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i 101 (452)
.++.....+++++.|+.+.+. ..|+.+.+++.+.+.. +. ...|....+..++|+++++++ |.+ +++ +|
T Consensus 21 ~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~----~~-~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I 95 (405)
T PRK09148 21 LKAAARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQD----PR-THRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQV 95 (405)
T ss_pred HHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHcC----cc-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcE
Confidence 333333356788999888765 3466677777665421 11 123444455677888888776 432 255 89
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGI 181 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i 181 (452)
++|+|+++++.+++.++ +.+||+|++++|+|+.....+ ...|+++..+++. .++.+.+++++.+
T Consensus 96 ~it~G~~~al~~~~~~l--------~~~gd~Vl~~~P~y~~~~~~~----~~~g~~v~~v~~~----~~~~~~~~l~~~~ 159 (405)
T PRK09148 96 VATLGSKEGFANMAQAI--------TAPGDVILCPNPSYPIHAFGF----IMAGGVIRSVPAE----PDEEFFPALERAV 159 (405)
T ss_pred EEcCChHHHHHHHHHHh--------cCCCCEEEEcCCCCcccHHHH----HhcCCEEEEEeCC----CCCCCccCHHHHH
Confidence 99999999999999977 589999999999999875555 3459999999652 2222244555555
Q ss_pred hccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----ccccccc----CccEEEEc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEI----GADFYVSN 250 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~----~~d~~~~s 250 (452)
+.. .+++++|++++|+||||.+++. ++|.++|++|++ ++|+|++++.... ...+... +..+++.|
T Consensus 160 ~~~---~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~-~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~S 235 (405)
T PRK09148 160 RHS---IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDI-IILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTS 235 (405)
T ss_pred hhc---cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCe-EEEEeccchhhhcCCCCCCChhhCCCccCcEEEEec
Confidence 422 3678999999999999999986 568889999999 7999999864221 1111111 23456889
Q ss_pred CcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 251 LHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
++|. +|.+| +|+++.++++++. + .... .....+.+...+.++..+++.... -++..++.++
T Consensus 236 fSK~-~~~pGlR~G~~v~~~~~i~~-l-~~~~-----------~~~~~~~~~~~q~~~~~~L~~~~~---~~~~~~~~~~ 298 (405)
T PRK09148 236 MSKT-FSMAGWRMGFAVGNERLIAA-L-TRVK-----------SYLDYGAFTPIQVAATAALNGPQD---CIAEMRELYK 298 (405)
T ss_pred cccc-cCCcchheeeeeCCHHHHHH-H-HHHH-----------HHhccCCChHHHHHHHHHHhCcHH---HHHHHHHHHH
Confidence 9995 77777 8999988877765 1 1110 000011222233333333321111 3566777888
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++++.+.+.|.+. ++.+..|.+ +.++|+.+|.... ..+..++.+.|.++.||.+.++..+..
T Consensus 299 ~~r~~l~~~L~~~-~~~~~~p~~--g~f~~~~l~~~~~---~~~~~~~~~~ll~~~gV~v~pg~~f~~------------ 360 (405)
T PRK09148 299 KRRDVLVESFGRA-GWDIPPPAA--SMFAWAPIPEAFR---HLGSLEFSKLLVEKADVAVAPGVGFGE------------ 360 (405)
T ss_pred HHHHHHHHHHHHc-CCccCCCCe--eEEEEEECCCccC---CCCHHHHHHHHHHhCCEEEeCchhhCC------------
Confidence 8899999999886 666544444 7789998873111 124567887776556999987665522
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++||++. .+.++++..++.|+++++.
T Consensus 361 --~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~ 390 (405)
T PRK09148 361 --HGDGYVRIALV--ENEQRIRQAARNIKRFLSS 390 (405)
T ss_pred --CCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 22579999997 3788888888888887753
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=227.54 Aligned_cols=340 Identities=15% Similarity=0.194 Sum_probs=227.6
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC----C--CCCCcEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----A--DDVGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~--~~~~~i~~t~g~t~a 110 (452)
.+++.|..+.+. ..|+.+.+++.+.+... . . .|....+..+++++++++++ . ..+++|++|+|+++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~-~--~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~a 103 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAIDAN---Q-S--HYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEA 103 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhcC---C-C--CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHH
Confidence 578999887766 34566778887665421 1 1 13333445667777777663 3 123689999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +.+||+|++++|.|.+....+ +..|.+++.++.+. +...+ ++.+++++++. .+
T Consensus 104 l~~~~~~~--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~---~~~~~d~~~l~~~~~~~---~~ 165 (391)
T PRK07309 104 LSASLTAI--------LEPGDKVLLPAPAYPGYEPIV----NLVGAEIVEIDTTE---NDFVLTPEMLEKAILEQ---GD 165 (391)
T ss_pred HHHHHHHh--------cCCCCEEEEeCCCCcchHHHH----HHcCCEEEEEecCC---cCCcCCHHHHHHHhhcc---CC
Confidence 99999976 588999999999999865444 45699999886421 11234 78898888532 24
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccccccc--CccEEEEcCcccCcCCCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEI--GADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~--~~d~~~~s~~K~l~g~~G 260 (452)
++++|++++|+||||..++ +++|+++|++|++ ++|+|++++.... ..++... +-.+++.|++|. +|.+|
T Consensus 166 ~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~-~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~~G 243 (391)
T PRK07309 166 KLKAVILNYPANPTGVTYSREQIKALADVLKKYDI-FVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKS-HAMTG 243 (391)
T ss_pred CeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCc-EEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhh-ccCcc
Confidence 7899999999999999987 6778889999999 7999999864321 1122111 234788899995 76667
Q ss_pred --cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 --~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|+++.++++++. + .... . ....+++...+.++ ..++.+........+++++++++++.+.|
T Consensus 244 lRvG~~v~~~~~~~~-~-~~~~----------~-~~~~~~~~~~q~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 307 (391)
T PRK07309 244 WRIGLIFAPAEFTAQ-L-IKSH----------Q-YLVTAATTMAQFAA---VEALTNGKDDALPMKKEYIKRRDYIIEKM 307 (391)
T ss_pred ceeEEEEeCHHHHHH-H-HHHH----------h-hcccCCChHHHHHH---HHHHhCChhHHHHHHHHHHHHHHHHHHHH
Confidence 8999998887765 1 1110 0 00012222233333 33333210012345667778888888888
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.+. ++.+..|.. +.++|+.+|.. ...+..++++.|.++.||.+.++..+.. ..++++|+
T Consensus 308 ~~~-~~~~~~p~g--g~~~~~~l~~~----~~~~~~~~~~~l~~~~gv~v~pg~~f~~--------------~~~~~iRi 366 (391)
T PRK07309 308 TDL-GFKIIKPDG--AFYIFAKIPAG----YNQDSFKFLQDFARKKAVAFIPGAAFGP--------------YGEGYVRL 366 (391)
T ss_pred HHC-CCeecCCCe--eEEEEEECCCC----CCCCHHHHHHHHHHhCCEEEeCchhhCC--------------CCCCEEEE
Confidence 876 676655544 66778888631 1124567887665556999977655422 23579999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++. +.++++..+++|++++++
T Consensus 367 ~~~~--~~~~l~~~i~~l~~~~~~ 388 (391)
T PRK07309 367 SYAA--SMETIKEAMKRLKEYMEE 388 (391)
T ss_pred EecC--CHHHHHHHHHHHHHHHHh
Confidence 9985 678999999999998864
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=229.90 Aligned_cols=339 Identities=13% Similarity=0.065 Sum_probs=222.3
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCCC------CcEEEecChhHHHHHHHHHhhccccc--CCCC-CCCEEEEeCCcchhHHH
Q 012991 75 FNSLRKGILESRAAVKDLINADDV------GEISLVDNATTAAAIVLQQIGRGFTE--GRFH-RNDTVLMLHCAFQAVKK 145 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~~------~~i~~t~g~t~a~~~~~~~l~~~~~~--~~~~-~g~~Vl~~~~~~~s~~~ 145 (452)
+....++..++.+++++++|.++. ...++|+|||+|+..++.+....+.+ .... +.-.|++++..|.|+.+
T Consensus 117 sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~K 196 (490)
T PLN02880 117 SPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQK 196 (490)
T ss_pred CcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHH
Confidence 355678889999999999999732 24789999999998887754322210 0001 12256678889999988
Q ss_pred HHHHHHHhcCcE---EEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCC
Q 012991 146 SIQAYVTRAGGS---VVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGV 221 (452)
Q Consensus 146 ~~~~~a~~~g~~---v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~ 221 (452)
+...+ |+. ++.++++ .+..+.+ ++.|+++|++....+..|.+|+.+..++.+|.++|+++|+++|++||+
T Consensus 197 aa~~l----Glg~~~v~~Vp~d--~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~i 270 (490)
T PLN02880 197 ACQIA----GIHPENCRLLKTD--SSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGM 270 (490)
T ss_pred HHHHc----CCCHHHEEEeecC--CCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCC
Confidence 87654 763 7778542 1224456 999999998665456778999999999999999999999999999999
Q ss_pred CEEEEecccccCCccc-----cccc-cCccEEEEcCcccCcCCCCcEEEEEecCcc--cc-CCCCCceeccCCC-Ccccc
Q 012991 222 DQVFVDAAHAMGSIKI-----DVKE-IGADFYVSNLHKWFFCPPSVAFLYCRKSIL--SS-DMHHPVVSHEFGN-GLPIE 291 (452)
Q Consensus 222 ~~~ivD~a~~~g~~~~-----~~~~-~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~--~~-~l~~~~~~~~~~~-~~~~~ 291 (452)
++|||+|++.+.... .+.. .++|+++.++|||++.|.|+|++++++... .. ....+|+...... ....+
T Consensus 271 -wlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~ 349 (490)
T PLN02880 271 -WFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVD 349 (490)
T ss_pred -EEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCC
Confidence 599999998875533 2333 268999999999999999999999985221 11 0011111100000 00000
Q ss_pred cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH---HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccC
Q 012991 292 SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH---EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVM 368 (452)
Q Consensus 292 ~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (452)
....+.+......++...+. ++.+ |.+.+++++. ++++++.+.|.+.+++++..++. .++++|+++......
T Consensus 350 ~~~~~i~~~rr~~alklw~~-l~~~--G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~--~~iv~Fr~~~~~~~~ 424 (490)
T PLN02880 350 YKDWQIPLGRRFRSLKLWMV-LRLY--GVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRI--FSLVCFRLVPPKNNE 424 (490)
T ss_pred hhccCcCCCCcccHHHHHHH-HHHh--CHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc--eEEEEEEEeCCCCCh
Confidence 00001111111122222111 2223 5555555555 99999999999988999888765 778999886210000
Q ss_pred Chhh--HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC-HHHHHHHHHHHHHHHhc
Q 012991 369 GEDD--ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT-LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 369 ~~~~--~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t-~~di~~l~~~l~~~~~~ 442 (452)
...+ ..++.+.|.+...+++..... ....++|+|++.++| .+||+.+++.|+++.++
T Consensus 425 ~~~~~~n~~l~~~l~~~g~~~v~~t~~-----------------~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~ 484 (490)
T PLN02880 425 DNGNKLNHDLLDAVNSSGKIFISHTVL-----------------SGKYVLRFAVGAPLTEERHVTAAWKVLQDEASK 484 (490)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEEEEE-----------------CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 0011 235777776666777654333 234699999977665 59999999999888654
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=229.19 Aligned_cols=335 Identities=13% Similarity=0.120 Sum_probs=224.4
Q ss_pred CCCCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChh
Q 012991 36 HQHGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t 108 (452)
.+++++.|+.+.+.. .++.+.+++.+.+.. + ....|....+..++|+++++++ |.+ +++ +|++|+|++
T Consensus 30 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~----~-~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~ 104 (389)
T PRK08068 30 EGHDVINLGQGNPDQPTPEHIVEALQEAAEN----P-ANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGK 104 (389)
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHHHhC----C-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence 346789999887663 456677777776542 1 1123434455677888888886 532 256 799999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+++..++.++ +++||+|++++|+|......+ +..|++++.+++.. +....+ ++++++.+
T Consensus 105 ~~l~~~~~~~--------~~~gd~vlv~~P~y~~~~~~~----~~~g~~~~~i~~~~--~~~~~~d~~~l~~~~------ 164 (389)
T PRK08068 105 AGLVELPQCL--------MNPGDTILVPDPGYPDYLSGV----ALARAQFETMPLIA--ENNFLPDYTKIPEEV------ 164 (389)
T ss_pred HHHHHHHHHh--------CCCCCEEEEcCCCCcchHHHH----HhcCCEEEEeeccc--ccCCCCCHHHHHHhc------
Confidence 9999988876 589999999999998765554 44699999996521 111233 78888887
Q ss_pred CCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCC----cccccc----ccCccEEEEcCcccCc
Q 012991 188 GKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGS----IKIDVK----EIGADFYVSNLHKWFF 256 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~----~~~~d~~~~s~~K~l~ 256 (452)
.+++++|++++|+||||.+++.+ +|+++|+++++ ++|+|+++.... .+.... ..+..+++.|++|. +
T Consensus 165 ~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~-~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~-~ 242 (389)
T PRK08068 165 AEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNI-GVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKT-F 242 (389)
T ss_pred cccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCe-EEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhc-c
Confidence 45789999999999999999865 67788999999 799999985311 111111 11234788899995 7
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|.+| +|+++.++++++. + ..... ....+.+.. .+. ++...+.+-..-++..++++++.++.+
T Consensus 243 g~~GlRiG~~~~~~~l~~~-l-~~~~~----------~~~~~~~~~-~q~---~~~~~l~~~~~~~~~~~~~~~~~r~~~ 306 (389)
T PRK08068 243 NMAGWRVAFAVGNESVIEA-I-NLLQD----------HLFVSLFGA-IQD---AAIEALLSDQSCVAELVARYESRRNAF 306 (389)
T ss_pred CCccceeEeEecCHHHHHH-H-HHHHh----------hccCCCChH-HHH---HHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 7777 8999888877765 1 11100 000011111 112 222222210012566788888889999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|.+. ++.+..+.+ +.++|+.++ ...++.++.+.|.+++||.+.++..+.. ...+
T Consensus 307 ~~~L~~~-g~~~~~~~g--~~~~~v~~~------~~~~~~~~~~~l~~~~gi~v~pg~~f~~--------------~~~~ 363 (389)
T PRK08068 307 ISACREI-GWEVDAPKG--SFFAWMPVP------KGYTSEQFADLLLEKAHVAVAPGNGFGE--------------HGEG 363 (389)
T ss_pred HHHHHHC-CCcccCCCe--eEEEEEECC------CCCCHHHHHHHHHHhCCEEEecchHhCc--------------cCCC
Confidence 9999886 776554443 667888886 3457788999997657999977655421 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHH
Q 012991 415 YARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
++||+++. +++.++..++.|++
T Consensus 364 ~iRi~~~~--~~~~l~~al~~l~~ 385 (389)
T PRK08068 364 YVRVGLLT--DEERLREAVERIGK 385 (389)
T ss_pred eEEEEEcC--CHHHHHHHHHHHHH
Confidence 99999974 56666666666654
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-26 Score=226.29 Aligned_cols=342 Identities=15% Similarity=0.133 Sum_probs=227.6
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t~ 109 (452)
.++++++|+.+.+. +.|+.+.+++.+.+... . ..|....+..++|+.+++++ |.+ ++++|++|+|+++
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~--~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~ 101 (388)
T PRK07337 28 AGRDIIHMGIGEPDFTAPEPVVEAAARALRRG----V--TQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASA 101 (388)
T ss_pred cCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcC----C--CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHH
Confidence 45789999998876 45677888887765421 1 12333345677888888876 431 3689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ +++||+|++++|+|+++...+ ...|.+++.++++ .++...+ ++++++.+ .
T Consensus 102 al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~--~~~~~~~~~~~l~~~~------~ 161 (388)
T PRK07337 102 ALLLACLAL--------VERGDEVLMPDPSYPCNRHFV----AAAEGRPVLVPSG--PAERFQLTAADVEAAW------G 161 (388)
T ss_pred HHHHHHHHh--------cCCCCEEEEeCCCchhhHHHH----HHcCCEEEEeecC--CccCCcCCHHHHHhhc------C
Confidence 999999876 589999999999999875554 4458899988652 1122344 88999888 5
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---cccccccCccE-EEEcCcccCcCCCC-
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKEIGADF-YVSNLHKWFFCPPS- 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~~~~d~-~~~s~~K~l~g~~G- 260 (452)
+++++|++++++||||.+++ +++|+++|+++++ ++|+|+++..-.. +......+.++ ++.|++|. +|.+|
T Consensus 162 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~-~~~~G~ 239 (388)
T PRK07337 162 ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGG-FTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKY-FNMTGW 239 (388)
T ss_pred ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCC-EEEEeccccccccCCCCcChhhccCCEEEEEechhh-cCCchh
Confidence 78899999999999999987 5677888999999 7999998753211 11222223344 56799996 66666
Q ss_pred -cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 -VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF-EGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 -~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|++++++++++. + ..... .+....+...+.++..++ ... ....++.++.++++++.+.+.|
T Consensus 240 RiG~~~~~~~l~~~-l-~~~~~-----------~~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~r~~~~~~L 303 (388)
T PRK07337 240 RLGWLVVPEALVGT-F-EKLAQ-----------NLFICASALAQHAALACF---EPDTLAIYERRRAEFKRRRDFIVPAL 303 (388)
T ss_pred heeeeecCHHHHHH-H-HHHHH-----------HhccCCChHHHHHHHHHh---ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988776664 1 11100 000122222332322232 210 0024556677788888899999
Q ss_pred HHHcCCCc-CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 339 ANAWGTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 339 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
.+. ++.+ ..|.+ ++++|+.++.... .+..+..++++.|.++.||.+.++..+.. ....+++|
T Consensus 304 ~~~-~~~~~~~p~~--g~f~~~~~~~~~~-~~~~~~~~~~~~ll~~~gv~v~pg~~f~~-------------~~~~~~~R 366 (388)
T PRK07337 304 ESL-GFKVPVMPDG--AFYVYADCRGVAH-PAAGDSAALTQAMLHDAGVVLVPGRDFGP-------------HAPRDYIR 366 (388)
T ss_pred Hhc-CCccccCCCe--eEEEEEecccccC-CCCCCHHHHHHHHHHhCCEEEeCchhhCC-------------CCCCCEEE
Confidence 886 6554 23433 7889998862100 01235678887765557999977655421 12357999
Q ss_pred ecccccCCHHHHHHHHHHHHHHH
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~ 440 (452)
++++. +.++++..+++|++++
T Consensus 367 i~~~~--~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 367 LSYAT--SMSRLEEAVARLGKLF 387 (388)
T ss_pred EEecC--CHHHHHHHHHHHHHHh
Confidence 99985 5788888888887654
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-25 Score=223.80 Aligned_cols=341 Identities=12% Similarity=0.150 Sum_probs=229.5
Q ss_pred CCeEEeccCC-CC-CCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 38 HGVARINNGS-FG-SCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 38 ~~~~~l~~~~-~~-~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
+.++.|..+. .+ ..++.+.+++.+.+..+....... ..+...+...++++.+++++|.+ ..+++++|++|+..+
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~---~~l~~~sG~~an~~a 121 (402)
T TIGR01821 45 KDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKE---SALVFTSGYVANDAT 121 (402)
T ss_pred eeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCC---eEEEECchHHHHHHH
Confidence 4556554443 44 345569999999887754322211 12334566789999999999974 456677778999988
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
+.++.. ..+++.|+.+...|.+...++. ..|.++..+ +..+ .+++++.++... ..++++|
T Consensus 122 i~~l~~------~~~~~~v~~~~~~h~s~~~~~~----~~g~~~~~~----~~~d----~~~l~~~l~~~~--~~~~~~v 181 (402)
T TIGR01821 122 LATLAK------IIPGCVIFSDELNHASMIEGIR----HSGAEKFIF----RHND----VAHLEKLLQSVD--PNRPKII 181 (402)
T ss_pred HHHhhC------CCCCCEEEEcchHhHHHHHHHH----HcCCeEEEE----CCCC----HHHHHHHHHhcc--CCCCeEE
Confidence 887631 2356777777778887766654 357777666 3332 355666664320 2368999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---c-cc--c--cCccEEEEcCcccCcCCCCcEEEEE
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---D-VK--E--IGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---~-~~--~--~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
++++++|++|.+.|+++|.++|++||+ ++|+|++|+.|...- . .. . ..+|+++.+++|. +|+.| |+++.
T Consensus 182 ~~e~~~~~~G~~~~l~~i~~l~~~~~~-~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa-~g~~G-G~i~~ 258 (402)
T TIGR01821 182 AFESVYSMDGDIAPIEEICDLADKYGA-LTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKA-FGVVG-GYIAA 258 (402)
T ss_pred EEcCCCCCCCCccCHHHHHHHHHHcCC-EEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhh-hccCC-ceeec
Confidence 999999999999999999999999999 799999998664311 1 01 1 1368898999997 56666 78777
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
++++++. + ..... ...+.++.+...+.+..++++.+.+ . +.++++.+++++++.+.|.++ ++.+
T Consensus 259 ~~~~~~~-l-~~~~~---------~~~~t~~~~~~~~aaa~aaL~~~~~---~-~~~~~~~~~~~~~l~~~L~~~-g~~~ 322 (402)
T TIGR01821 259 SRKLIDA-I-RSYAP---------GFIFTTSLPPAIAAGATASIRHLKE---S-QDLRRAHQENVKRLKNLLEAL-GIPV 322 (402)
T ss_pred CHHHHHH-H-HHhCc---------CceecCcCCHHHHHHHHHHHHHhhc---C-HHHHHHHHHHHHHHHHHHHHc-CCCc
Confidence 7776654 1 11000 0001123333345555567777664 2 556667788999999999886 7765
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
..+. ++++.+.++ ...++.++.+.|.+++||.++....+.. .....++|++++.++|+
T Consensus 323 ~~~~---~~i~~i~~~------~~~~a~~~~~~L~~~~Gi~v~~~~~p~~-------------~~g~~~lRis~~~~~t~ 380 (402)
T TIGR01821 323 IPNP---SHIVPVIIG------DAALCKKVSDLLLNKHGIYVQPINYPTV-------------PRGTERLRITPTPAHTD 380 (402)
T ss_pred CCCC---CCEEEEEeC------CHHHHHHHHHHHHhcCCEEEEeECCCCC-------------CCCCceEEEEeCCCCCH
Confidence 5432 556666554 2235667888886556999976433211 12346899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+||++++++|++++++
T Consensus 381 edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 381 KMIDDLVEALLLVWDR 396 (402)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-26 Score=227.98 Aligned_cols=339 Identities=12% Similarity=0.043 Sum_probs=229.3
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCCC------CcEEEecChhHHHHHHHHHhhcccccC---CCCCCCEEEEeCCcchhHHH
Q 012991 75 FNSLRKGILESRAAVKDLINADDV------GEISLVDNATTAAAIVLQQIGRGFTEG---RFHRNDTVLMLHCAFQAVKK 145 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~~------~~i~~t~g~t~a~~~~~~~l~~~~~~~---~~~~g~~Vl~~~~~~~s~~~ 145 (452)
+....++..++.+++++++|.++. ...+||+|||+|+..++.+......+. ...+.-.|++++..|.|+.+
T Consensus 165 sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~K 244 (539)
T PLN02590 165 SPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRK 244 (539)
T ss_pred CchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHH
Confidence 456678899999999999999732 347899999999988876543222110 00122256667889999888
Q ss_pred HHHHHHHhcCc---EEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCC
Q 012991 146 SIQAYVTRAGG---SVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGV 221 (452)
Q Consensus 146 ~~~~~a~~~g~---~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~ 221 (452)
+...+ |+ .++.++++ ..+.+.+ ++.|+++|++....+..|.+|+.+..++.+|.++|+++|+++|++||+
T Consensus 245 Aa~il----Glg~~~vr~Vp~d--~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~ 318 (539)
T PLN02590 245 ACLIG----GIHEENIRLLKTD--SSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGI 318 (539)
T ss_pred HHHHc----CCCcccEEEEeCC--CCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCC
Confidence 86554 76 58888542 1123566 999999998665556779999999999999999999999999999999
Q ss_pred CEEEEecccccCCcccc-c----c-ccCccEEEEcCcccCcCCCCcEEEEEecCc--ccc-CCCCCceeccC---CCCc-
Q 012991 222 DQVFVDAAHAMGSIKID-V----K-EIGADFYVSNLHKWFFCPPSVAFLYCRKSI--LSS-DMHHPVVSHEF---GNGL- 288 (452)
Q Consensus 222 ~~~ivD~a~~~g~~~~~-~----~-~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~--~~~-~l~~~~~~~~~---~~~~- 288 (452)
| +|||+|++......+ . . -..+|.++.++|||++.|.++|++++++.. ... ....+|+.... +...
T Consensus 319 W-lHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d 397 (539)
T PLN02590 319 W-LHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVN 397 (539)
T ss_pred e-EEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCC
Confidence 5 999999876654221 1 1 124799999999999999999999998642 111 01122221110 0000
Q ss_pred ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccC
Q 012991 289 PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVM 368 (452)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (452)
..+.....+.. ...+.++.+++.+..- |+.++.++..++++++.+.|.+.+++++..++. .++++|++.......
T Consensus 398 ~~d~~i~lsRr-~raLklW~~lr~~G~~--G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~--l~iVcFr~~~~~~~~ 472 (539)
T PLN02590 398 YKDWQISLSRR-FRSLKLWMVLRLYGSE--NLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY--FSLVCFRLAPVDGDE 472 (539)
T ss_pred ccccCCCCCCc-hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc--eEEEEEEecCCCCCH
Confidence 00000011222 2334556666666643 889999999999999999999998999888765 778999874210000
Q ss_pred C--hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc-ccCCHHHHHHHHHHHHHHHhc
Q 012991 369 G--EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ-VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 369 ~--~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l~~~~~~ 442 (452)
. ..-..++.+.|.+. |........ .....+||+++. +.++++||+.+++.|.+...+
T Consensus 473 ~~~~~ln~~l~~~l~~~-G~~~vs~t~----------------~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~ 532 (539)
T PLN02590 473 DQCNERNRELLAAVNST-GKIFISHTA----------------LSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532 (539)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEEeeE----------------ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 11134677787765 544322222 123458999984 557789999999999987654
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=225.23 Aligned_cols=327 Identities=13% Similarity=0.091 Sum_probs=218.8
Q ss_pred eEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChhHHHH
Q 012991 40 VARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNATTAAA 112 (452)
Q Consensus 40 ~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t~a~~ 112 (452)
++.|+.+.+. +.|+.+.+++.+..... ..|....+..++|+++++++ |.+ +++ +|++|+|+++++.
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~ 74 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVPEV-------SQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIF 74 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHhcc-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHH
Confidence 4556666554 33666888887764321 12333344567777777775 642 255 8999999999999
Q ss_pred HHHHHhhcccccCCCCCC---CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 113 IVLQQIGRGFTEGRFHRN---DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g---~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
.++.++ +++| |+|++++|.|+.....+. ..|.+++.+++.. ++...+ ++++++++ .
T Consensus 75 ~~~~~~--------~~~g~~~d~Vl~~~p~y~~~~~~~~----~~g~~~~~v~~~~--~~~~~~d~~~l~~~~------~ 134 (350)
T TIGR03537 75 HFPLVF--------IDPEEDRRRVIFGTPGYPVYERGAL----FAGGEPTAVKLKK--EDGFLLRLEKVEKSI------L 134 (350)
T ss_pred HHHHHH--------cCCCCCCceEEEcCCCCcchHHHHH----hcCCEEEEcccCc--ccCCccCHHHHHHhh------h
Confidence 998877 3555 799999999998766654 4699999996521 112234 88999888 4
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC---cccccccc--CccEEEEcCcccCcCCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS---IKIDVKEI--GADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~---~~~~~~~~--~~d~~~~s~~K~l~g~~G 260 (452)
++++++++++++||||.++| +++|+++|+++|+ ++|+|++++... ....+... +..+++.|++|. +|.+|
T Consensus 135 ~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~-~g~~G 212 (350)
T TIGR03537 135 EETKIVWINYPHNPTGATAPRSYLKETIAMCREHGI-ILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKR-SGMTG 212 (350)
T ss_pred hccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCc-EEEEeccccccccCCCCCchhhcCcCCEEEEeecccc-cCCcc
Confidence 57899999999999999998 7788899999999 899999986422 11122211 234777799996 66666
Q ss_pred --cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 --~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|+++.+++++.. + ..... . +..+.+...+.++..++. . ....+..+++++++.+.+.+.|
T Consensus 213 lRiG~~~~~~~~~~~-~-~~~~~----------~-~~~~~~~~~q~~~~~~l~---~-~~~~~~~r~~l~~~~~~~~~~l 275 (350)
T TIGR03537 213 YRSGFVAGDEKLISF-L-RKLRA----------N-FGVASPDFVQAAAKAAWS---D-DNHVLERRKIFKRKRDLFIEFF 275 (350)
T ss_pred ccceeeecCHHHHHH-H-HHHHH----------h-hccCCCHHHHHHHHHHhC---C-cHHHHHHHHHHHHHHHHHHHHH
Confidence 7888877666654 1 11100 0 001111112222222222 1 1134566777888888888888
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.+. ++++..+.. +.++|+.+| ...++.++++.|.+ .||.+..+..+.. ..++++|+
T Consensus 276 ~~~-g~~~~~~~g--~~~~~~~~~------~~~~~~~l~~~L~~-~gv~v~~g~~f~~--------------~~~~~~Ri 331 (350)
T TIGR03537 276 NKV-GLEYLYPDA--TFYLWVKVP------SGIDAKDYALRLLE-NGIVVAPGENFGS--------------GEEGYVRV 331 (350)
T ss_pred HHC-CCcccCCCe--EEEEEEECC------CCCCHHHHHHHHHH-CCEEEcCchhhCC--------------CCCCEEEE
Confidence 876 666555443 667888887 34567789999977 5999977655421 22579999
Q ss_pred cccccCCHHHHHHHHHHHHH
Q 012991 419 SHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~ 438 (452)
++. .+.++++..++.+++
T Consensus 332 ~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 332 ALV--PTLEECEEALRLWER 349 (350)
T ss_pred Eec--CCHHHHHHHHHHHhc
Confidence 986 478889998888765
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=227.09 Aligned_cols=325 Identities=15% Similarity=0.128 Sum_probs=228.1
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
+.++++|+.+..+ +.|+.+.+++.+.+... ....|+ . ....++|+.++++++.+..++|++|+|+++++..++
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Y~--~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~ 98 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLAEV---ALNRYP--D-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLA 98 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhhcc---ccccCC--C-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHH
Confidence 3578999888766 57778999998876421 111122 1 235889999999999863358999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.++ +++||+|++++|.|...... ++..|++++.+++ ++++.+ ++++++.++ ..++++|
T Consensus 99 ~~~--------~~~gd~vlv~~P~y~~~~~~----~~~~g~~~~~i~~----~~~~~~d~~~l~~~~~-----~~~~~~v 157 (356)
T PRK04870 99 LAC--------AKPGATVLAPEPGFVMYRMS----AKLAGLEFVGVPL----TADFTLDLPAMLAAIA-----EHRPALV 157 (356)
T ss_pred HHh--------cCCCCEEEECCCCHHHHHHH----HHHcCCEEEEecC----CCCCCCCHHHHHHHhh-----cCCCCEE
Confidence 876 58899999999999875443 4667999999954 333344 899999885 3578999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-c--ccccccCccEEEEcCcccCcCCCC--cEEEEEecC
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-K--IDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKS 269 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~--~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~ 269 (452)
++++++||||.++|.+++.++++..++ ++|+|+++..... . ..+...+-.+++.|++| + +.+| +|+++++++
T Consensus 158 ~l~~p~NPtG~~~~~~~~~~i~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~-~~~GlRiG~~i~~~~ 234 (356)
T PRK04870 158 FLAYPNNPTGNLFDDADVERIIEAAPG-LVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-L-GLAGLRLGYLAGHPA 234 (356)
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCchhhcCcchHHHHhhCCCEEEEecchh-h-hhHHHhhhhhhCCHH
Confidence 999999999999999998888877788 7999998753211 1 01222233578889999 3 5666 899988877
Q ss_pred ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 270 ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
++.. +. .... ....+...+.+...+++... .++..+++++++++.+.+.|..++++.+. +
T Consensus 235 ~i~~-~~-~~~~-------------~~~~~~~~q~~a~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~ 294 (356)
T PRK04870 235 WIAE-LD-KVRP-------------PYNVNVLTQATALFALEHVD----VLDAQAAQLRAERTRLAAALAALPGVTVF-P 294 (356)
T ss_pred HHHH-HH-HccC-------------CCcCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHhCCCcEEC-C
Confidence 7665 21 1100 01122222222233333211 35667777888899999999887776543 3
Q ss_pred cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 350 PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
+. ++++|+.++ +..++.+.|.+ +||.+..+..+.. ..++++|+|++ +.+++
T Consensus 295 ~~--~~~~~~~~~---------~~~~~~~~l~~-~gI~v~~~~~f~~--------------~~~~~iRis~~---~~~~~ 345 (356)
T PRK04870 295 SA--ANFILVRVP---------DAAAVFDGLKT-RGVLVKNLSGMHP--------------LLANCLRVTVG---TPEEN 345 (356)
T ss_pred CC--CeEEEEECC---------CHHHHHHHHHH-CCEEEEECCCCCC--------------CCCCeEEEeCC---CHHHH
Confidence 33 668888774 34678888865 5999976544311 23579999998 79999
Q ss_pred HHHHHHHHHHH
Q 012991 430 EKFRDAVILLV 440 (452)
Q Consensus 430 ~~l~~~l~~~~ 440 (452)
++++++|++++
T Consensus 346 ~~l~~al~~~~ 356 (356)
T PRK04870 346 AQFLAALKAAL 356 (356)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=227.96 Aligned_cols=345 Identities=14% Similarity=0.133 Sum_probs=229.9
Q ss_pred CCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC-----CCCCCcEEEecC
Q 012991 37 QHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN-----ADDVGEISLVDN 106 (452)
Q Consensus 37 ~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~i~~t~g 106 (452)
+..++.|+.+.+. +.++.+.+++.+.+... ....|....+..+++++++++++ ++ +++|++|+|
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~-~~~i~~t~G 103 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSG-----KYNGYAPTVGALSAREAIASYYHNPDGPIE-ADDVVLCSG 103 (401)
T ss_pred CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhcc-----CCCCCCCCCCCHHHHHHHHHHHhhcCCCCC-HHHEEECcC
Confidence 4678999988763 45677888887765421 11224445567889999999987 53 689999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
+++++.+++.++ +++||+|++++|.|...... ++..|+++..++++ .+++..+ ++.+++.+
T Consensus 104 ~~~al~~~~~~l--------~~~gd~v~i~~P~y~~~~~~----~~~~g~~v~~~~~~--~~~~~~~d~~~l~~~~---- 165 (401)
T TIGR01264 104 CSHAIEMCIAAL--------ANAGQNILVPRPGFPLYETL----AESMGIEVKLYNLL--PDKSWEIDLKQLESLI---- 165 (401)
T ss_pred hHHHHHHHHHHh--------CCCCCEEEEeCCCChhHHHH----HHHcCCEEEEeecC--CccCCCCCHHHHHHHh----
Confidence 999999999977 47899999999999765444 45569999988652 1222334 88888888
Q ss_pred cCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccccC---ccEEEEcCcccC
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEIG---ADFYVSNLHKWF 255 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~~---~d~~~~s~~K~l 255 (452)
..++++|++++++||||.+++ +++|+++|+++|+ ++|+|+++..... ...+.... ..+++.|++|.
T Consensus 166 --~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~- 241 (401)
T TIGR01264 166 --DEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCL-PIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKR- 241 (401)
T ss_pred --ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCccc-
Confidence 456899999999999999987 6678889999999 7999999763221 11111111 23678899995
Q ss_pred cCCCC--cEEEEEecC--ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 256 FCPPS--VAFLYCRKS--ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 256 ~g~~G--~G~l~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
++.+| +|++++.+. .+.. +...... ... ....++...+.++..+++... ..-++..++++++.+
T Consensus 242 ~~~~GlRiG~iv~~~~~~~~~~-~~~~~~~--------~~~-~~~~~~~~~q~a~~~~l~~~~--~~~l~~~~~~~~~~r 309 (401)
T TIGR01264 242 WLVPGWRLGWIIIHDRRGILRD-IRDGLVK--------LSQ-RILGPCTIVQGALPSILLRTP--QEYFDGTLSVLESNA 309 (401)
T ss_pred CCCccceEEEEEecCcchhHHH-HHHHHHH--------Hhh-ccCCCCcHHHHHHHHHHHhCc--HHHHHHHHHHHHHHH
Confidence 66777 888887642 1111 0000000 000 001223333333333332210 113566777888888
Q ss_pred HHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
+.+.+.|.+++++.+..|.+ ++++|+.++... ..+..+..++.+.|.+++||.+.++..+ .
T Consensus 310 ~~l~~~L~~~~~~~~~~p~~--g~f~~~~~~~~~-~~~~~~~~~~~~~l~~~~gI~v~pg~~f----------------~ 370 (401)
T TIGR01264 310 MLCYGALAAVPGLRPVMPSG--AMYMMVGIEMEH-FPEFKNDVEFTERLVAEQSVFCLPGSCF----------------E 370 (401)
T ss_pred HHHHHHHHhCCCCcccCCCe--eeEEEEEecccc-cCCCCCHHHHHHHHHHhCCEEEeCchhc----------------C
Confidence 89999998876666555544 888998875210 0012345678888765569999766543 1
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|++++. +.++++..+++|.+++++
T Consensus 371 ~~~~iRis~~~--~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 371 YPGFFRVVLTV--PVVMMEEACSRIQEFCER 399 (401)
T ss_pred CCCeEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence 25799999985 678899999999988754
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=220.02 Aligned_cols=321 Identities=18% Similarity=0.231 Sum_probs=234.9
Q ss_pred CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC-CCCCCcEEEecChhHHHHHHHH
Q 012991 39 GVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN-ADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 39 ~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
+++.|+.+... ..|+.+.+++.+....+..+|+. ...+++++++++++ .+ +++|++++|+++.+..+++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~--------~~~~l~~a~a~~~~~~~-~~~V~~gnGsde~i~~l~~ 93 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDP--------DYRELRAALAEYYGVVD-PENVLVGNGSDELIELLVR 93 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCC--------cHHHHHHHHHHHhCCCC-cceEEEcCChHHHHHHHHH
Confidence 57777766655 33366888888877655444444 37889999999999 54 7899999999999999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++ ..+||.|+++.|+|..+... ++..|++++.++. .+ ... ++.+.+.+ .+++++|+
T Consensus 94 ~~--------~~~gd~vl~~~Ptf~~Y~~~----a~~~g~~~~~v~~----~~-~~~d~~~~~~~~------~~~~~lv~ 150 (356)
T COG0079 94 AF--------VEPGDTVLIPEPTFSMYEIA----AQLAGAEVVKVPL----KE-FRLDLDAILAAI------RDKTKLVF 150 (356)
T ss_pred Hh--------hcCCCEEEEcCCChHHHHHH----HHhcCCeEEEecc----cc-cccCHHHHHHhh------hcCCCEEE
Confidence 87 58899999999999875444 4567999999954 33 333 78888888 45899999
Q ss_pred EeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCcc--ccccccCc-cEEEEcCcccCcCCCC--cEEEEEec
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSIK--IDVKEIGA-DFYVSNLHKWFFCPPS--VAFLYCRK 268 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~~--~~~~~~~~-d~~~~s~~K~l~g~~G--~G~l~~~~ 268 (452)
+++|+||||..++.++|.+++... +. ++++|+|+.--..+ ........ -+++-|++| .+|..| +|+++.++
T Consensus 151 i~nPNNPTG~~~~~~~l~~l~~~~~~~~-~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSK-a~gLAGlRlGy~ia~~ 228 (356)
T COG0079 151 LCNPNNPTGTLLPREELRALLEALPEGG-LVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSK-AFGLAGLRVGYAIANP 228 (356)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCCc-EEEEeCchhhcCCchhhhhccCCCCEEEEEecHH-hhhcchhceeeccCCH
Confidence 999999999999999888888754 78 79999997532221 11111122 367779999 588888 89988898
Q ss_pred CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cC
Q 012991 269 SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LG 347 (452)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~ 347 (452)
++++. + ..... +.+.+..+..+..++++... -.+...+++.+.+.++.+.|++++ +. +.
T Consensus 229 ~~i~~-l-~~vr~-------------p~~v~~~a~~aa~aal~~~~----~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~ 288 (356)
T COG0079 229 ELIAA-L-NKVRP-------------PFNVSSPALAAAIAALRDAD----YLEESVERIREERERLYAALKALG-LFGVF 288 (356)
T ss_pred HHHHH-H-HHhcC-------------CCCCCHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHHHHHHHhCC-CCeec
Confidence 88876 2 11100 01233334444444444432 356778888999999999999885 44 43
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
|.. .+|+++..+ +.. +..+.+.|.++ ||.++..... +..++++||+++ |++
T Consensus 289 -pS~--aNFvlv~~~------~~~-~~~l~~~L~~~-giivR~~~~~---------------~~~~~~lRitvg---t~e 339 (356)
T COG0079 289 -PSQ--ANFVLVRVP------DAE-AAALAEALLKK-GILVRDCSSV---------------GLLPGYLRITVG---TPE 339 (356)
T ss_pred -CCC--CcEEEEECC------Ccc-HHHHHHHHHHC-CEEEEeCCCC---------------CCCCCeEEEEeC---CHH
Confidence 333 789999886 223 55789999775 9999865431 245679999999 899
Q ss_pred HHHHHHHHHHHHHhc
Q 012991 428 DYEKFRDAVILLVEE 442 (452)
Q Consensus 428 di~~l~~~l~~~~~~ 442 (452)
+.++++++|+++++.
T Consensus 340 en~~ll~AL~~~~~~ 354 (356)
T COG0079 340 ENDRLLAALREVLKG 354 (356)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998865
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=223.49 Aligned_cols=322 Identities=14% Similarity=0.130 Sum_probs=224.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccc
Q 012991 44 NNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 44 ~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~ 123 (452)
.+-+.++.|+++++++.++...+ ....+..+++++.+++++|++ ++++|+|+|+|+.+++.++
T Consensus 18 t~~g~s~~~~~v~~a~~~~~~~~---------~~~~~~~~~~~~~~a~~~g~~---~~~~~~g~t~al~~al~al----- 80 (363)
T TIGR01437 18 TILGVSTVSDEVADAQKRGAQNY---------FEIKELVNKTGEYIANLLGVE---DAVIVSSASAGIAQSVAAV----- 80 (363)
T ss_pred ecCCCCCCCHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHhhCCC---eEEEEcCHHHHHHHHHHHH-----
Confidence 33345568888999999986432 124567899999999999984 6899999999999999987
Q ss_pred cCCCCCCC---------------EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 124 EGRFHRND---------------TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 124 ~~~~~~g~---------------~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+++|| +|+++.+.|......+.......|+++++++.++ .+ ++++++++
T Consensus 81 ---~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~------~~d~~~le~ai------ 145 (363)
T TIGR01437 81 ---ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYAN------ECSAEQLEAAI------ 145 (363)
T ss_pred ---hcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCC------CCCHHHHHHhc------
Confidence 35565 8998875554332223333456799999985422 23 89999999
Q ss_pred CCceEEEE-EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 188 GKMIRLAI-IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 188 ~~~~~lv~-~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
+++|++++ +++++|++|.+.|+++|+++|++||+ ++++|++|+.... .+..+++|++++|+||++.||. .|+++.
T Consensus 146 ~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi-~vivD~a~~~~~~--~~~~~g~D~~~~S~~K~l~gp~-~G~l~~ 221 (363)
T TIGR01437 146 TEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNL-PLIVDAAAEEDLQ--KYYRLGADLVIYSGAKAIEGPT-SGLVLG 221 (363)
T ss_pred ChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCC-eEEEECCCCCchH--HHHHcCCCEEEEeCCcccCCCc-eEEEEE
Confidence 67888765 56778899999999999999999999 7999999973211 1223478999999999999998 599888
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
+++.++. + .+.. .+..... ..++ ..+.++.++++++.+. +.+.+.++. +.++++.+.|.+++|+.+
T Consensus 222 ~~~~i~~-~-~~~~---~~~~~~~---~~~~---~~~~gl~aAl~~~~~~--~~~~~~~~~-~~~~~l~~~L~~i~g~~~ 287 (363)
T TIGR01437 222 KKKYIEW-V-KLQS---KGIGRAM---KVGK---ENILGLTAALEQYLST--GKESGAEMV-AKLTPFIEALNTLKGVSA 287 (363)
T ss_pred cHHHHHH-H-Hhcc---CCCccee---ccCH---HHHHHHHHHHHHHHcc--CcccHHHHH-HHHHHHHHHHhcCCCeEE
Confidence 8777664 1 1211 1111111 1122 2356777888877754 555555544 456689999999888876
Q ss_pred CCCccc--c---cceEEEEcCCccccCChhhHHHHHHHHhhhcc--eEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 347 GSPPEI--C---AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFG--VEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 347 ~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
..+... . ...+.|... ..+.+..++.+.|.+ .+ |.++... ...+.+|++
T Consensus 288 ~~~~~~~~~~~~~~~v~~~~~-----~~g~~~~~l~~~L~~-~~~~I~~r~~~------------------~~~~~~~l~ 343 (363)
T TIGR01437 288 SIVQDEAGRDIARAEIRFDES-----ELGMTAADVVQALRQ-GEPAIYTRGYK------------------ANEGIIEID 343 (363)
T ss_pred EEecCCCCCcCceEEEEEecc-----CCCCCHHHHHHHHhc-CCCCEEEeeee------------------ecCCeEEEE
Confidence 532211 1 122333321 025678899999975 36 6665421 235689999
Q ss_pred ccccCCHHHHHHHHHHHHHHH
Q 012991 420 HQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.. ++++|+++++++|++++
T Consensus 344 ~~~-~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 344 PRS-VTGGQLDIIVERIREIV 363 (363)
T ss_pred eec-CCHHHHHHHHHHHHHhC
Confidence 876 46999999999998863
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=224.07 Aligned_cols=344 Identities=15% Similarity=0.092 Sum_probs=247.3
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCc-----hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE-EecChhHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPD-----DFYFNSLRKGILESRAAVKDLINADDVGEIS-LVDNATTAAAI 113 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~-~t~g~t~a~~~ 113 (452)
+++|. +++...|++|++++..-+.++.+.+. ++.+..+.++++++++.+.++++.++..+++ +..|||.++..
T Consensus 8 ~~~f~-pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea 86 (365)
T PLN02452 8 VFNFS-AGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAA 86 (365)
T ss_pred eEeee-CCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHH
Confidence 44554 55777888899999887655443322 2345778899999999999999996333554 55789999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH--HHHHHHHHhccccCCCce
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI--INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~--~~~l~~~i~~~~~~~~~~ 191 (452)
++.++ +.+|+++++......+ ..|...|++.|...+....+ ......+ ++++ +. .+++
T Consensus 87 ~~~nl--------~~~~~~~l~~~~G~fg--~r~~~~a~~~g~~~~~~~~~--~~~~~~~~~~~~~----~~----~~~~ 146 (365)
T PLN02452 87 IPLNL--------CKPGDKADFVVTGSWS--KKAAKEAKKYCKTNVIASGK--DEKYTKIPSVSEW----EL----TPDA 146 (365)
T ss_pred HHHhc--------CCCCCeEEEEECCHHH--HHHHHHHHHhCCCcEEEecC--CCCCCCCCChHHc----CC----CCCC
Confidence 99987 5788888876655544 33444478888644433211 1111111 3332 21 4578
Q ss_pred EEEEEeccCCCCccc-ccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 192 RLAIIDHITSMPCVV-IPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~-~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
+.|.++|.+++||+. .|++++. ++ ++++|+++++|+.++|+.++++|+ +|.||+ +||+|+|++++++++
T Consensus 147 ~~v~~~hnETstGv~~~~~~~i~------~~-~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~-lGP~Gl~~v~vr~~~ 216 (365)
T PLN02452 147 KFVHICANETIHGVEFKDYPDVG------NV-PLVADMSSNFLSKPVDVSKYGVIY--AGAQKN-VGPSGVTIVIIRKDL 216 (365)
T ss_pred cEEEECCCCCCCcEecCcccccC------CC-eEEEECCccccCcccCHHHcCEEE--Eecccc-cCCCCeEEEEEcHHH
Confidence 999999999999995 7887774 38 799999999999999999887755 699996 589999999999999
Q ss_pred cccCCCCCceeccCCCCc-ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCC
Q 012991 271 LSSDMHHPVVSHEFGNGL-PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGS 348 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~ 348 (452)
+++ . .+.......... ..+..+.+||++..++++.++++++.+ ++|++++.++.+++++++++.|++.+|+ ....
T Consensus 217 l~~-~-~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~-~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~ 293 (365)
T PLN02452 217 IGN-A-RPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLA-QGGLKAMEKRNIRKADLLYDAIDESNGFYVCPV 293 (365)
T ss_pred Hhh-c-ccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 875 2 111100000000 012234579999999999999999986 3589999999999999999999987776 2111
Q ss_pred C-cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 349 P-PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 349 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
+ .......+.|.+++ .....++.+.+.++ |+..-.++... +.+|+|+....+.+
T Consensus 294 ~~~~rs~~~vsF~~~~------~~~~~~f~~~~~~~-g~~~~~G~r~~------------------gg~R~s~yna~~~~ 348 (365)
T PLN02452 294 EKSVRSLMNVPFTLGG------SELEAEFVKEAAKA-GMVQLKGHRSV------------------GGMRASIYNAMPLA 348 (365)
T ss_pred ChHHhCCeEEEEEcCC------chhHHHHHHHHHHC-CCcccCCcccc------------------CceEEECcCCCCHH
Confidence 1 22334578888872 23567888998765 99986666531 23999999889999
Q ss_pred HHHHHHHHHHHHHhc
Q 012991 428 DYEKFRDAVILLVEE 442 (452)
Q Consensus 428 di~~l~~~l~~~~~~ 442 (452)
+|++|+++|++..++
T Consensus 349 ~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 349 GVEKLVAFMKDFQAK 363 (365)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=227.67 Aligned_cols=347 Identities=14% Similarity=0.130 Sum_probs=231.6
Q ss_pred CCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCCcEEEecC
Q 012991 37 QHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVGEISLVDN 106 (452)
Q Consensus 37 ~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~i~~t~g 106 (452)
+.+++.|+.+.++ +.++.+.+++.+.+... ....|.......++|+.++++++.. +++++++|+|
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~-----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G 104 (403)
T TIGR01265 30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSG-----KFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSG 104 (403)
T ss_pred CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcC-----CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecC
Confidence 5679999998764 56677888888765421 1112334556788999999999841 3579999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
+|+|+.+++.++ ..+||+|++++|+|...... +...|.+++.+++. .++.+.+ ++.+++.+
T Consensus 105 ~t~al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~--~~~~~~~d~~~l~~~~---- 166 (403)
T TIGR01265 105 CSQAIEICIEAL--------ANPGANILVPRPGFPLYDTR----AAFSGLEVRLYDLL--PEKDWEIDLDGLEALA---- 166 (403)
T ss_pred hHHHHHHHHHHh--------CCCCCEEEEeCCCchhHHHH----HHHcCCEEEEecCC--cccCCccCHHHHHHHh----
Confidence 999999999987 47899999999999765333 45679999988652 1223334 88998888
Q ss_pred cCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc----cccccc---CccEEEEcCcccC
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKEI---GADFYVSNLHKWF 255 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~~---~~d~~~~s~~K~l 255 (452)
.++++++++++++||||.+++ +++|.++|+++|+ ++|+|++++..... ..+..+ ..-+++.|++|.
T Consensus 167 --~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~- 242 (403)
T TIGR01265 167 --DEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGI-PIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKR- 242 (403)
T ss_pred --CcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEccccccccCCCCccchhhhccCCcEEEEeecccc-
Confidence 567899999999999999987 7788999999999 79999997643211 111111 123677899995
Q ss_pred cCCCC--cEEEEEec--CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 256 FCPPS--VAFLYCRK--SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 256 ~g~~G--~G~l~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
++.+| +|++++.+ +.+...+...... + .. ....++...+.++..+++.... .-+++.++++++.+
T Consensus 243 ~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~--~------~~-~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~ 311 (403)
T TIGR01265 243 WVVPGWRLGWIIIHDPHGIFRDTVLQGLKN--L------LQ-RILGPATIVQGALPDILENTPQ--EFFDGKISVLKSNA 311 (403)
T ss_pred cCCCcceEEEEEEeCchhhhHHHHHHHHHH--H------hh-hhcCCChHHHHHHHHHHHhChH--HHHHHHHHHHHHHH
Confidence 66666 88888742 2221100000000 0 00 0012233333334334432111 13566677788888
Q ss_pred HHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
+.+.+.|...+++.+..|.+ ++++|+.++.... .+..+..++.+.|.++.||.+.++..+ .
T Consensus 312 ~~l~~~L~~~~~~~~~~p~~--g~f~~~~~~~~~~-~~~~~~~~~~~~l~~~~gv~v~pg~~f----------------~ 372 (403)
T TIGR01265 312 ELCYEELKDIPGLVCPKPEG--AMYLMVKLELELF-PEIKDDVDFCEKLVREESVICLPGSAF----------------G 372 (403)
T ss_pred HHHHHHHhcCCCceecCCCc--eeEEEEecccccc-CCCCCHHHHHHHHHHhCCEEEeCcccc----------------C
Confidence 88999998776666555544 7899998863100 001256678888655579999776554 1
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|++++. ..+.++..+++|++++++
T Consensus 373 ~~~~iRis~~~--~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 373 LPNWVRITITV--PESMLEEACSRIKEFCER 401 (403)
T ss_pred CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 25799999984 577899999999887753
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=225.90 Aligned_cols=321 Identities=16% Similarity=0.139 Sum_probs=222.7
Q ss_pred CCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 38 HGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 38 ~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
..+++|+.+.... .|+.+.+++.+.+.... . .|. .....++|++++++++++ +++|++|+|+++++.+++.
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~----~--~y~-~~~~~~lr~aia~~~~~~-~~~I~it~G~~~al~~~~~ 95 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDL----R--LYP-DPNADALRQAIAAYYGLD-PEQVFVGNGSDEVLAHAFL 95 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhhh----h--cCC-CCcHHHHHHHHHHHhCCC-HHHEEEcCCHHHHHHHHHH
Confidence 5688999887663 46778999887654311 1 121 223478999999999996 7999999999999999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++ +++||+|++++|.|+.. ..+ ++..|++++.+++ ++++.+ ++++++ .+++|+
T Consensus 96 ~l--------~~~gd~vlv~~P~y~~~-~~~---~~~~g~~~~~v~~----~~~~~~d~~~l~~----------~~~~v~ 149 (353)
T PRK05387 96 AF--------FNHDRPLLFPDITYSFY-PVY---AGLYGIPYEEIPL----DDDFSIDVEDYLR----------PNGGII 149 (353)
T ss_pred Hh--------cCCCCEEEEeCCCHHHH-HHH---HHHcCCEEEEeec----CCCCCCCHHHHHh----------cCCEEE
Confidence 87 58999999999999654 333 4556999999854 333333 666542 246889
Q ss_pred EeccCCCCcccccHHHHHHHHHHc-CCCEEEEecccccCC-c-ccc-ccccCccEEEEcCcccCcCCCC--cEEEEEecC
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDE-GVDQVFVDAAHAMGS-I-KID-VKEIGADFYVSNLHKWFFCPPS--VAFLYCRKS 269 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~-~~~~~ivD~a~~~g~-~-~~~-~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~ 269 (452)
+++|+||||.++|.+++.++++.+ ++ ++|+|+++..-. . ... ....+..+++.|++|. +|.+| +|+++.+++
T Consensus 150 ~~~P~NPtG~~~~~~~~~~l~~~~~~~-~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~GlR~G~~~~~~~ 227 (353)
T PRK05387 150 FPNPNAPTGIALPLAEIERILAANPDS-VVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKS-RSLAGLRVGFAIGHPE 227 (353)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCc-EEEEeCcccccCCcchHHHHhhCCCEEEEEehhHh-hcchhhhceeeecCHH
Confidence 999999999999999999999876 89 799999874211 0 011 1112346888899996 66555 899988877
Q ss_pred ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 270 ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
+++. + ..... .....+.+...+.++..+++.. +..++.+++++++++.+.+.|.+. ++.+. +
T Consensus 228 ~~~~-l-~~~~~----------~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~ 289 (353)
T PRK05387 228 LIEA-L-NRVKN----------SFNSYPLDRLAQAGAIAAIEDE----AYFEETRAKVIATRERLVEELEAL-GFEVL-P 289 (353)
T ss_pred HHHH-H-HHhhc----------cCCCCCcCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-C
Confidence 7664 1 11100 0000122333333333343321 135677888888999999999887 76653 3
Q ss_pred cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 350 PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
+. ++++++.++ +.+..++.+.|.+ .||.++....+ ...+++|++++ +.+++
T Consensus 290 ~~--~~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~~~~~----------------~~~~~iRis~~---~~~~~ 340 (353)
T PRK05387 290 SK--ANFVFARHP-------SHDAAELAAKLRE-RGIIVRHFNKP----------------RIDQFLRITIG---TDEEM 340 (353)
T ss_pred Cc--CcEEEEECC-------CCCHHHHHHHHHH-CCEEEEECCCC----------------CCCCeEEEEeC---CHHHH
Confidence 33 668888775 3467789999966 59999642211 23579999997 67999
Q ss_pred HHHHHHHHHHHh
Q 012991 430 EKFRDAVILLVE 441 (452)
Q Consensus 430 ~~l~~~l~~~~~ 441 (452)
++++++|++++.
T Consensus 341 ~~~~~~L~~~~~ 352 (353)
T PRK05387 341 EALVDALKEILA 352 (353)
T ss_pred HHHHHHHHHHhh
Confidence 999999998763
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=228.30 Aligned_cols=346 Identities=12% Similarity=0.075 Sum_probs=230.6
Q ss_pred CCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCCCcEEEec
Q 012991 37 QHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDVGEISLVD 105 (452)
Q Consensus 37 ~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~i~~t~ 105 (452)
.+++++|+.|.+. ..|+.+.+++.+.+.. +. .+.|....+..++|++++++++ ++ +++|++|+
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~----~~-~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~-~~~I~it~ 138 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS----GK-GNSYGPGAGILPARRAVADYMNRDLPHKLT-PEDIFLTA 138 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC----CC-CCCCCCCCChHHHHHHHHHHHHHhcCCCCC-cccEEEeC
Confidence 5679999998654 2445677777766532 11 1234455667889999999884 43 78999999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKG 184 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~ 184 (452)
|+++++.+++.++ +++||+|++++|.|+.+... +...|.+++.+++. .+++..+ +++|++++
T Consensus 139 G~~~al~~~~~~l--------~~pGd~Vlv~~P~y~~y~~~----~~~~g~~~~~~~l~--~~~~~~~d~~~l~~~~--- 201 (462)
T PLN02187 139 GCNQGIEIVFESL--------ARPNANILLPRPGFPHYDAR----AAYSGLEVRKFDLL--PEKEWEIDLEGIEAIA--- 201 (462)
T ss_pred CHHHHHHHHHHHh--------cCCCCEEEEeCCCCccHHHH----HHHcCCEEEEEeCc--cccCCccCHHHHHHhc---
Confidence 9999999999987 58999999999999975433 45579999999762 1223344 89999888
Q ss_pred ccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---c-cccccc---CccEEEEcCccc
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---K-IDVKEI---GADFYVSNLHKW 254 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~-~~~~~~---~~d~~~~s~~K~ 254 (452)
.++++++++++|+||||.+++ +++|+++|++||+ ++|+|++++.... + ..+... ..-+++.|++|.
T Consensus 202 ---~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i-~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~ 277 (462)
T PLN02187 202 ---DENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGI-MVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKG 277 (462)
T ss_pred ---CCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCC-EEEEeccccccccCCCCceeHHHhccCCcEEEEecchhh
Confidence 567899999999999999998 6678889999999 7999999864221 1 111111 124677899995
Q ss_pred CcCCCC--cEEEEEe-cCcc----ccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHHHHHH
Q 012991 255 FFCPPS--VAFLYCR-KSIL----SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDGIMQR 326 (452)
Q Consensus 255 l~g~~G--~G~l~~~-~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~~~~~ 326 (452)
++.+| +|++++. ++.+ .. + ...... +. ....++...+.++.++++. ... -++..++.
T Consensus 278 -f~~pGlRiG~~v~~~p~~~~~~~~~-~-~~~~~~-~~--------~~~~~s~~~Q~a~~~~L~~~~~~---~l~~~~~~ 342 (462)
T PLN02187 278 -WVVPGWKIGWIALNDPEGVFETTKV-L-QSIKQN-LD--------VTPDPATIIQAALPAILEKADKN---FFAKKNKI 342 (462)
T ss_pred -cCCccceeEEEEecCchhHHHHHHH-H-HHHHHh-cc--------ccCCCCHHHHHHHHHHHhcCcHH---HHHHHHHH
Confidence 77777 7888874 3211 11 0 000000 00 0012233344444444431 111 35667778
Q ss_pred HHHHHHHHHHHHHHHcCCCcC-CCcccccceEEEEcCCccccCChh-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLG-SPPEICAAMVMVGLPSRLRVMGED-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG 404 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~ 404 (452)
++++++.+.+.|.++++.... .|.+ ++++|+.++.... .+. +..+++..+.++.||.+.++..+
T Consensus 343 l~~~r~~l~~~L~~~~~~~~~~~P~g--g~fl~~~l~~~~~--~~~~~~~~~~~~ll~~~gV~v~pG~~f---------- 408 (462)
T PLN02187 343 LKHNVDLVCDRLKDIPCVVCPKKPES--CTYLLTKLELSLM--DNIKDDIDFCVKLAREENLVFLPGDAL---------- 408 (462)
T ss_pred HHHHHHHHHHHHhhCCCCcCCCCCCE--eEEEEeecChhhC--CCCCCHHHHHHHHHhhCCEEEECcccc----------
Confidence 888899999999887443322 3333 6788887642100 112 34456555545569999766554
Q ss_pred CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccccc
Q 012991 405 ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQVC 446 (452)
Q Consensus 405 ~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 446 (452)
...+++||+++. .++.++..+++|+++++.-.+.
T Consensus 409 ------g~~~~iRis~~~--~~e~l~~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 409 ------GLKNWMRITIGV--EAHMLEDALERLKGFCTRHAKK 442 (462)
T ss_pred ------CCCCeEEEEeCC--CHHHHHHHHHHHHHHHHHhhhc
Confidence 225799999985 6788999999999988755443
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=226.16 Aligned_cols=334 Identities=13% Similarity=0.087 Sum_probs=222.5
Q ss_pred CCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh------CCCCCCcEEEecChhHH
Q 012991 38 HGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI------NADDVGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i~~t~g~t~a 110 (452)
++++.|+.+.+.. .++.+.+++...... ....|....+..++|+++++++ +++ +++|++|+|+++|
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~-~~~i~it~G~~~a 101 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDAKK------GHTRYTDSGGDVELIEEIIKYYSKNYDLSFK-RNEIMATVGACHG 101 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHHhc------CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-hhhEEEcCChHHH
Confidence 4678888777663 344455544332211 1122334445566778888776 343 7899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++||+|++++|.|......+.. .|.+++.+++. .++...+ ++++++.+ .+
T Consensus 102 l~~~~~~~--------~~~gd~vlv~~p~y~~~~~~~~~----~g~~~~~~~~~--~~~~~~~d~~~l~~~~------~~ 161 (384)
T PRK06348 102 MYLALQSI--------LDPGDEVIIHEPYFTPYKDQIEM----VGGKPIILETY--EEDGFQINVKKLEALI------TS 161 (384)
T ss_pred HHHHHHHh--------cCCCCEEEEeCCCCcchHHHHHH----cCCEEEEecCC--cCcCCcCCHHHHHHhh------Cc
Confidence 99999987 58999999999999887666543 58888887541 1122234 89999888 46
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc---cc---ccc-cCccEEEEcCcccCcCCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK---ID---VKE-IGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~~---~~~-~~~d~~~~s~~K~l~g~~ 259 (452)
++++|++++|+||||.+++ +++|.++|+++++ ++|+|++++..... .. +.. .+..+++.|++|. +|.+
T Consensus 162 ~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~-~~l~ 239 (384)
T PRK06348 162 KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDL-FIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKD-FAMT 239 (384)
T ss_pred CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCe-EEEEecccccceeCCCccchhhcCCCcCcEEEEecchhc-cCCc
Confidence 7899999999999999997 5677888999999 79999998643211 11 111 1235778899996 5655
Q ss_pred C--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 260 S--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 260 G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
| +|+++++++++.. + .... .....+.+...+.++..++....+ -.+.+++.++++++.+.+.
T Consensus 240 GlRiG~~v~~~~~~~~-~-~~~~-----------~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~r~~~~~~~ 303 (384)
T PRK06348 240 GWRIGYVIAPDYIIET-A-KIIN-----------EGICFSAPTISQRAAIYALKHRDT---IVPLIKEEFQKRLEYAYKR 303 (384)
T ss_pred cccceeeecCHHHHHH-H-HHHH-----------HhccCCCCHHHHHHHHHHHhCcHH---HHHHHHHHHHHHHHHHHHH
Confidence 5 8999888776654 1 1110 000012223333333333332222 2456677778888888898
Q ss_pred HHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 338 LANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 338 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
|.+++++++..+.+ +.++|+.++. .+.+..++++.|.+++||.+.++..+.. ...+++|
T Consensus 304 L~~~~~~~~~~p~g--g~~~~~~~~~-----~~~~~~~l~~~l~~~~gv~v~pg~~f~~--------------~~~~~iR 362 (384)
T PRK06348 304 IESIPNLSLHPPKG--SIYAFINIKK-----TGLSSVEFCEKLLKEAHVLVIPGKAFGE--------------SGEGYIR 362 (384)
T ss_pred HhcCCCceeccCCe--eEEEEEeccc-----CCCCHHHHHHHHHHhCCEEEcCchhhcc--------------CCCCeEE
Confidence 98776665554443 6677888762 1356778888876667999977665522 2357999
Q ss_pred ecccccCCHHHHHHHHHHHHHH
Q 012991 418 ISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~ 439 (452)
+|++ .+.++++..++.|+++
T Consensus 363 i~~~--~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 363 LACT--VGIEVLEEAFNRIEKM 382 (384)
T ss_pred EEec--CCHHHHHHHHHHHHhh
Confidence 9996 3788899888888754
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=227.65 Aligned_cols=348 Identities=15% Similarity=0.136 Sum_probs=230.8
Q ss_pred HHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCC------------CCCCcEEEecChhHHHHHHHHHhhcccccCC-
Q 012991 61 KWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINA------------DDVGEISLVDNATTAAAIVLQQIGRGFTEGR- 126 (452)
Q Consensus 61 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~------------~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~- 126 (452)
.....++.+...+ .+....++.+++.++++++++. ++....+||+|||+|+..++.+.........
T Consensus 109 ~l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~ 188 (522)
T TIGR03799 109 KLMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADG 188 (522)
T ss_pred HHHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccc
Confidence 3444444444332 3456678889999999999852 1123468999999999988876543221000
Q ss_pred -----------------CCCCCEEEEeCCcchhHHHHHHHHHHhcCc---EEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 127 -----------------FHRNDTVLMLHCAFQAVKKSIQAYVTRAGG---SVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 127 -----------------~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
..++..|++++.+|+|+.++... .|. +++.+ |.++++.+ +++|+++|++..
T Consensus 189 ~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~----lglg~~~v~~v----p~d~~g~~d~~~L~~~i~~~~ 260 (522)
T TIGR03799 189 DFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADV----LGIGRDNLIAI----KTDANNRIDVDALRDKCAELA 260 (522)
T ss_pred cccccccccchhhhhhccCCceEEEECCCchHHHHHHHHH----cCCCcccEEEE----EeCCCCcCCHHHHHHHHHHHH
Confidence 01245788999999998777554 466 78888 44566777 999999997543
Q ss_pred cCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc-----cccc-CccEEEEcCcccCcCCC
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID-----VKEI-GADFYVSNLHKWFFCPP 259 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~l~g~~ 259 (452)
..+.++-+|+.+..++.+|.+.|+++|+++|+++|+ ++|||+|++.+....+ +..+ ++|++++|+|||+++|.
T Consensus 261 ~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~-~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~ 339 (522)
T TIGR03799 261 EQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGC-HFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPM 339 (522)
T ss_pred HCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCC-eEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCc
Confidence 334456666667788899999999999999999999 5999999987765444 3433 68999999999999999
Q ss_pred CcEEEEEecCcc-ccCC--CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 260 SVAFLYCRKSIL-SSDM--HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 260 G~G~l~~~~~~~-~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
|+|++++++... +. + ..+|... .+..........++.+..+ +.++.+++++... |++.+.++..++++++.+
T Consensus 340 g~G~llvr~~~~~~~-~~~~~~Yl~~-~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~--G~~~ii~~~~~la~~l~~ 414 (522)
T TIGR03799 340 GAGMVLFKDPALMSA-IEHHAEYILR-KGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRK--GYELLIDQSIEKAKYFAD 414 (522)
T ss_pred ccEEEEEeCHHHHHH-hccCcchhcC-CCCCccccceeecCcchHH-HHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHH
Confidence 999999986433 22 1 1122211 0110001111224455443 4588889988865 999999999999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcC-Ccccc-------------CChhh--HHHHHHHHhhhcceEeeeccc-CCCCCC
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLP-SRLRV-------------MGEDD--ALRLRGHLRVRFGVEVPIHYQ-APKDDG 399 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~--~~~l~~~L~~~~gI~v~~~~~-~~~~~~ 399 (452)
.|.+.++++++.++. .++++|++. ..... ....+ ...+.+.+++. |........ .+..
T Consensus 415 ~L~~~~~~el~~~p~--l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~-G~~~vs~t~l~~~~-- 489 (522)
T TIGR03799 415 LIQQQPDFELVTEPE--LCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREA-GKSFVSRTRLTPAQ-- 489 (522)
T ss_pred HHhhCCCeEEecCCC--ccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEecccc--
Confidence 999999999888765 678888852 11100 00011 13566666665 555422221 1000
Q ss_pred CCCCCCCCCCCCccceEEecc-cccCCHHHHHHHHHH
Q 012991 400 QPQAGARDKDGIITGYARISH-QVYNTLEDYEKFRDA 435 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~ 435 (452)
..+.....+|+++ ++.+|.+||+.+++.
T Consensus 490 --------~~g~~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 490 --------YDHQPTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred --------cCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence 0012235799998 566788889988764
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=225.45 Aligned_cols=340 Identities=15% Similarity=0.144 Sum_probs=228.7
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t~a 110 (452)
..++.|+.+.+. +.|..+.+++.+.+.. .. ..|....+..++|+++++++ |.+ +++ +|++|+|++++
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~----~~--~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~a 99 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADALLD----GS--NQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEA 99 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhc----CC--CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHH
Confidence 568899887665 3466677776664431 11 12333445566777777765 432 356 89999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++||+|++++|.|+..... ++..|.+++.++++ .+++.+ .+.+++.+ ..
T Consensus 100 l~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~---~~~~~~~~~~l~~~~------~~ 158 (387)
T PRK08912 100 LAAALLAL--------VEPGDEVVLFQPLYDAYLPL----IRRAGGVPRLVRLE---PPHWRLPRAALAAAF------SP 158 (387)
T ss_pred HHHHHHHh--------cCCCCEEEEeCCCchhhHHH----HHHcCCEEEEEecC---cccCcCCHHHHHHHh------Cc
Confidence 99998876 58899999999999876544 45569999998652 112334 78899888 56
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc------cc-cccc-cCccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI------KI-DVKE-IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~------~~-~~~~-~~~d~~~~s~~K~l~g~ 258 (452)
++++|++++++||||.+++ +++|.++|++|++ ++|+|++++.... ++ .+.. .+.++++.|++|. +|.
T Consensus 159 ~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~ 236 (387)
T PRK08912 159 RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDA-VAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKI-FSL 236 (387)
T ss_pred cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCe-EEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhh-ccC
Confidence 8899999999999999998 5568899999999 7999999753211 11 1111 1356889999995 777
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + ..... ....+.+...+.++..++....+ -.+.+++++++.++.+.+
T Consensus 237 ~GlRiG~~~~~~~~~~~-l-~~~~~-----------~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~ 300 (387)
T PRK08912 237 TGWKVGFVCAAPPLLRV-L-AKAHQ-----------FLTFTTPPNLQAAVAYGLGKPDD---YFEGMRADLARSRDRLAA 300 (387)
T ss_pred cCceeEEEecCHHHHHH-H-HHHHh-----------hccccCChHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHH
Confidence 77 8999998877664 1 11100 00011111122222223321111 246677888899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.+. ++.+..+.+ +.++|+.++... ...+..++++.|.+++||.+.++..+... ....+++
T Consensus 301 ~L~~~-g~~~~~~~g--~~~l~~~l~~~~---~~~~~~~~~~~l~~~~gV~v~pg~~f~~~------------~~~~~~i 362 (387)
T PRK08912 301 GLRRI-GFPVLPSQG--TYFLTVDLAPLG---LAEDDVAFCRRLVEEAGVAAIPVSAFYEE------------DPVTSVV 362 (387)
T ss_pred HHHhC-CCcccCCCc--ceEEEecccccC---CCCCHHHHHHHHHhcCCEEEecchhhCCC------------CCCCCEE
Confidence 99887 777665543 677888876210 02456788888765569999776554211 1235799
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++. ..++++..++.|++.+.+
T Consensus 363 Rl~~~~--~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 363 RFCFAK--RDATLDEAVERLAAARRR 386 (387)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 999996 578899999999887653
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=224.71 Aligned_cols=346 Identities=11% Similarity=0.127 Sum_probs=225.5
Q ss_pred CCCeEEeccCCCC---CCcHHHHHHHHHHHHHHhcCC-chhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNGSFG---SCPKSVLADQQKWQLKFLQQP-DDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~~~~---~~p~~v~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
++.+++|....+- .....+.+++.+.+..+.... ++...++.....+++++.+|+++|.+ +.+++++| ..++.
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~--~ai~~~~G-~~an~ 175 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKP--AAIVFGMG-YATNS 175 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCC--cEEEECCH-HHHHH
Confidence 4567777555432 222334444444444432221 22223556788999999999999985 66777664 55666
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhcc----ccCC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKG----KKDG 188 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~----~~~~ 188 (452)
.++.++ +++||.|++++++|.++..++ +..|++++.++ .++ .+++++.+++. +..+
T Consensus 176 ~~i~al--------~~~Gd~Vi~d~~~h~s~~~~~----~~~Ga~v~~~~----~~d----~~~le~~l~~~i~~~~p~t 235 (489)
T PLN02483 176 TIIPAL--------IGKGGLIISDSLNHNSIVNGA----RGSGATIRVFQ----HNT----PSHLEEVLREQIAEGQPRT 235 (489)
T ss_pred HHHHHh--------CCCCCEEEEcchhhHHHHHHH----HHcCCeEEEEe----CCC----HHHHHHHHHhhhhcccccc
Confidence 666665 589999999999999987654 55699999984 333 23344433311 0001
Q ss_pred --CceE-EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---------ccccccCccEEEEcCcccCc
Q 012991 189 --KMIR-LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---------IDVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 189 --~~~~-lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~l~ 256 (452)
+..+ +|++++..+++|.+.++++|+++|++||+ ++++|++|+.|... +++...+.|+++.|++|+ +
T Consensus 236 ~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~-~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs-~ 313 (489)
T PLN02483 236 HRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKA-YVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKS-F 313 (489)
T ss_pred ccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCC-EEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchh-c
Confidence 1124 66777778999999999999999999999 79999999876432 222223679999999997 6
Q ss_pred CCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhh--cCHHHHHHHHHHHHHHH
Q 012991 257 CPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFE--GGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~g~~~~~~~~~~~~~~l 334 (452)
|+.| |+++.++++++. +. .... ...+.++.+.....++.++++.+...+ +-..+.+++++++++++
T Consensus 314 g~~G-G~i~~~~~li~~-l~-~~~~---------~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l 381 (489)
T PLN02483 314 GSCG-GYIAGSKELIQY-LK-RTCP---------AHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFF 381 (489)
T ss_pred ccCc-eEEEcCHHHHHH-HH-HhCc---------cccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH
Confidence 7777 898888887775 21 1100 000112222223333445666554210 01234567889999999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
++.|.++ |+.+..+.. ++++++.+. ...+..++.+.|.++ ||.+.....+.. ....+
T Consensus 382 ~~~L~~~-G~~v~~~~~--sp~~~l~l~------~~~~~~~~~~~Ll~~-GI~v~~~~fp~~-------------p~~~~ 438 (489)
T PLN02483 382 RSELQKM-GFEVLGDND--SPVMPIMLY------NPAKIPAFSRECLKQ-NVAVVVVGFPAT-------------PLLLA 438 (489)
T ss_pred HHHHHHC-CCcccCCCC--CCEEEEEEC------CHHHHHHHHHHHHHC-CcEEeeeCCCCC-------------CCCCc
Confidence 9999987 777655433 456666554 233556788888775 999864322211 12346
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+|++++..+|.+||++++++|+++.+.
T Consensus 439 ~vRi~isa~~t~edId~~l~~L~~~~~~ 466 (489)
T PLN02483 439 RARICISASHSREDLIKALEVISEVGDL 466 (489)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999989999999999999998753
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=225.22 Aligned_cols=369 Identities=13% Similarity=0.072 Sum_probs=236.3
Q ss_pred cccCCCCCCC--CCHHHHHhhhcc-CCCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Q 012991 14 VSKKPKLTRC--ISEAEIRDEFSH-HQHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILES 85 (452)
Q Consensus 14 ~~~~~~~~~~--~~~~~ir~~~~~-~~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (452)
++|.+.+... ..+..+++.+.. .+++++.|..|.+. +.|+.+.+++.+.+... ....|....+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~-----~~~~Y~~~~G~~~l 79 (409)
T PLN00143 5 NLKTEPPSYSIDDAVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSA-----KFNSYAPTGGILPA 79 (409)
T ss_pred ccCCCcccchHHHHHHHHHHhcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCc-----CCCCCCCCCCCHHH
Confidence 3455544322 224555665543 45689999998875 77888889888766431 11224444566778
Q ss_pred HHHHHhHhC------CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 86 RAAVKDLIN------ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 86 ~~~la~~~~------~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
|++++++++ ++ +++|++|+|+++++.+++.++ +++||+|++++|.|+.....+ ...|.++.
T Consensus 80 r~aia~~~~~~~g~~~~-~~~I~it~G~~~al~~~~~~l--------~~~gd~v~v~~P~y~~~~~~~----~~~g~~~~ 146 (409)
T PLN00143 80 RRAIADYLSNDLPYQLS-PDDVYLTLGCKHAAEIIIKVL--------ARPEANILLPRPGFPDVETYA----IFHHLEIR 146 (409)
T ss_pred HHHHHHHHHhhcCCCCC-HhhEEEecChHHHHHHHHHHH--------cCCCCEEEEcCCCCcCHHHHH----HHcCCEEE
Confidence 888888873 43 789999999999999999987 589999999999998865444 44699999
Q ss_pred EEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc
Q 012991 160 EVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI 235 (452)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~ 235 (452)
.+++. .++...+ +++|++++ .++++++++++|+||||.+++ +++|+++|++|++ ++|+|+++.....
T Consensus 147 ~~~~~--~~~~~~~d~~~l~~~~------~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~-~ii~De~Y~~l~~ 217 (409)
T PLN00143 147 HFDLL--PEKGWEVDLDAVEAIA------DENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGI-LVIADEVYGHIVF 217 (409)
T ss_pred EEecc--CCCCCcCCHHHHHHhc------ccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCC-eEEEEcccccccc
Confidence 88652 1122334 88898887 467899999999999999998 5577888999999 7999999864221
Q ss_pred ------cc-cccccCccEEEEcCcccCcCCCC--cEEEEEe-cC-cccc-CCCCCceeccCCCCcccccccccccCcccc
Q 012991 236 ------KI-DVKEIGADFYVSNLHKWFFCPPS--VAFLYCR-KS-ILSS-DMHHPVVSHEFGNGLPIESAWIGTRDYSAQ 303 (452)
Q Consensus 236 ------~~-~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~-~~-~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (452)
++ .+.....-+++.|++|. ++.+| +|++++. ++ +++. ........ ..... ...+...+
T Consensus 218 ~~~~~~~~~~~~~~~~vi~~~SfSK~-f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~q 287 (409)
T PLN00143 218 GSKPFVPMGLFASIVPVITLGSISKR-WMIPGWGLGWLVTCDPSGLLQICEIADSIKK--------ALNPA-PFPPTFIQ 287 (409)
T ss_pred CCCCCcchhhhcccCcEEEEccchhh-cCCCccceEEEEeeCchhhhhhHHHHHHHHH--------HHhcc-CCCCchHH
Confidence 11 11111234788899995 67777 8888873 43 3221 00000000 00000 11122233
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCCh-hhHHHHHHHHhh
Q 012991 304 LVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE-DDALRLRGHLRV 382 (452)
Q Consensus 304 ~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~ 382 (452)
.++..+++.... +-+++.++++++.++.+.+.|.++++.....++. .++++|+.++.... .+ .+..++...+.+
T Consensus 288 ~a~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~-gg~f~w~~l~~~~~--~~~~~~~~~~~~ll~ 362 (409)
T PLN00143 288 AAIPEILEKTTE--DFFSKTINILRAALAFCYDKLKEIPCIMCPQKAE-GAFFALVKLNLLLL--EDIEDDMEFCLKLAK 362 (409)
T ss_pred HHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-eeEEEEEecchhhc--CCCCCHHHHHHHHHH
Confidence 333333321000 1255667777777888888887764333222222 27899998862100 01 134566655545
Q ss_pred hcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 383 RFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 383 ~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.||.+.++..+ ...+++||+++. +.++++..+++|+++++.
T Consensus 363 ~~gV~v~pg~~f----------------~~~~~iRi~~~~--~~~~l~~al~rl~~~l~~ 404 (409)
T PLN00143 363 EESLIILPGVTV----------------GLKNWLRITFAV--EQSSLEDGLGRLKSFCGR 404 (409)
T ss_pred hCCEEEeCcccc----------------CCCCeEEEEEcC--CHHHHHHHHHHHHHHHHH
Confidence 569999776554 225799999984 688899999999998864
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=223.58 Aligned_cols=338 Identities=13% Similarity=0.152 Sum_probs=228.5
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChhH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t~ 109 (452)
.+.++.|+.+.+. +.|+.+.+++.+.+... ...|...++..++|+.+++++ |.+ +++ +|++|+|+++
T Consensus 27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~ 100 (387)
T PRK07683 27 YDNLISLTIGQPDFPTPSHVKEAAKRAITEN------YTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASE 100 (387)
T ss_pred cCCeEEecCCCCCCCCCHHHHHHHHHHHhcC------CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHH
Confidence 4678999988765 44567888888776421 112333455677888888877 432 256 8999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ +++||+|++++|.|......+ ...|++++.++++ .+...+ .+.+++.+ .
T Consensus 101 al~~~~~~l--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~---~~~~~~~~~~l~~~~------~ 159 (387)
T PRK07683 101 AIDIAFRTI--------LEPGTEVILPAPIYPGYEPII----RLCGAKPVFIDTR---STGFRLTAEALENAI------T 159 (387)
T ss_pred HHHHHHHHh--------CCCCCEEEEcCCCccchHHHH----HHcCCEEEEeecC---cccCCCCHHHHHHhc------C
Confidence 999999876 578999999999998765554 4469999998542 112223 67888887 4
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccccc----CccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKEI----GADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~l~g~ 258 (452)
++++++++++++||||..++ +++|.++|+++|+ ++|+|++++.... ...+... +-.+++.|++|. +|.
T Consensus 160 ~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~-~~~ 237 (387)
T PRK07683 160 EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNI-FVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKS-HSM 237 (387)
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCe-EEEEecccccceeCCCcCChhhccCCcCCeEEEeecccc-ccC
Confidence 67899999999999999987 6678899999999 7999999875321 1111111 235788899996 665
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + .....+ .....+.. +..++..++.....-.+.++++++++++.+.+
T Consensus 238 pGlRiG~i~~~~~l~~~-~-~~~~~~-----------~~~~~~~~---~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (387)
T PRK07683 238 TGWRIGFLFAPSYLAKH-I-LKVHQY-----------NVTCASSI---SQYAALEALTAGKDDAKMMRHQYKKRRDYVYN 301 (387)
T ss_pred ccceeEEEEcCHHHHHH-H-HHHHHh-----------ccCCCChH---HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 66 8999888776665 1 111000 00111222 22333334432101245667777888888888
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.+. ++.+..++. +.++|..++. ...+..++...+.++.||.+.++..+.. ..++++
T Consensus 302 ~l~~~-~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~ll~~~gI~v~pg~~f~~--------------~~~~~~ 359 (387)
T PRK07683 302 RLISM-GLDVEKPTG--AFYLFPSIGH-----FTMSSFDFALDLVEEAGLAVVPGSAFSE--------------YGEGYV 359 (387)
T ss_pred HHHHc-CCcccCCCe--eEEEEEeccc-----CCCCHHHHHHHHHHhCCEEEcCchhhCC--------------CCCCeE
Confidence 88876 666555543 5667766651 1345566776654557999987765522 235799
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
||+++. ++++++..+++|.++++.-
T Consensus 360 Ri~~~~--~~~~~~~al~~l~~~l~~~ 384 (387)
T PRK07683 360 RLSYAY--SIETLKEGLDRLEAFLQQK 384 (387)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHHhh
Confidence 999985 6889999999999988653
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=221.70 Aligned_cols=342 Identities=11% Similarity=0.118 Sum_probs=228.2
Q ss_pred CCCeEEeccCC-CC-CCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGS-FG-SCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~-~~-~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
++.+++|..+. .+ ..++.+.+++.+.+..+....+.. ..+...+...++++.+++++|.+ +. ++.++|++|+..
T Consensus 45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~--~~-~~~~sG~~an~~ 121 (407)
T PRK09064 45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKE--AA-LVFTSGYVSNDA 121 (407)
T ss_pred CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCC--cE-EEECcHHHHHHH
Confidence 35677775443 33 335569999998877653222111 11334677899999999999863 44 555666778887
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++..+.+ ..+++.|+.+...|.+...++.. .+.++..+ +..+ .+++++.++... .+++++
T Consensus 122 ai~~l~~------~~~~~~i~~~~~~h~s~~~~~~~----~~~~~~~~----~~~d----~~~le~~l~~~~--~~~~~~ 181 (407)
T PRK09064 122 TLSTLAK------LIPDCVIFSDELNHASMIEGIRR----SRCEKHIF----RHND----VAHLEELLAAAD--PDRPKL 181 (407)
T ss_pred HHHHHhC------CCCCCEEEEeCcchHHHHHHHHH----cCCcEEEE----CCCC----HHHHHHHHHhcc--CCCCeE
Confidence 7776631 24667777777778877666533 46676655 3332 466666664320 257899
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-----c-cccc--cCccEEEEcCcccCcCCCCcEEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK-----I-DVKE--IGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~-~~~~--~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.|... + +... ..+|+++.|++|. +|+.| |+++
T Consensus 182 v~~~~v~s~~G~~~~l~~i~~l~~~~~~-~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa-~g~~G-G~~~ 258 (407)
T PRK09064 182 IAFESVYSMDGDIAPIAEICDLADKYNA-LTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKA-FGVMG-GYIA 258 (407)
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHcCC-EEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchh-hhccC-ceEe
Confidence 9999999999999999999999999999 89999999865421 0 1111 1468999999996 67776 8888
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
.++++++. + ..... ...+.+..+.....+..++++++.+ .+..+++++++++++.+.|.++ |++
T Consensus 259 ~~~~~~~~-l-~~~~~---------~~~~t~~~~~~~~~aa~~al~~~~~----~~~~~~~~~~~~~~l~~~L~~~-g~~ 322 (407)
T PRK09064 259 GSAALVDA-V-RSYAP---------GFIFTTSLPPAIAAAALASIRHLKE----SNEERERHQERAAKLKAALDAA-GIP 322 (407)
T ss_pred cCHHHHHH-H-HHhCc---------cccccCcCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 88776654 1 11100 0001122222344555566777664 2345678889999999999886 776
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+..+. ++++.+.++ +..++.++.+.|.++.||.++....+.. ....+++|++++.++|
T Consensus 323 ~~~~~---~~iv~i~~~------~~~~~~~l~~~L~~~~gi~v~~~~~p~~-------------~~~~~~lRis~~~~~t 380 (407)
T PRK09064 323 VMPNE---SHIVPVMVG------DPEKCKKASDMLLEEHGIYVQPINYPTV-------------PRGTERLRITPTPFHT 380 (407)
T ss_pred CCCCC---CCEEEEEeC------CHHHHHHHHHHHHHhCCEEEeeECCCCC-------------CCCCceEEEEeCCCCC
Confidence 65432 556666654 2345678888886556999975433211 1223689999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
.+|+++++++|+++++.
T Consensus 381 ~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 381 DEMIDHLVEALVEVWAR 397 (407)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=224.53 Aligned_cols=339 Identities=15% Similarity=0.127 Sum_probs=225.3
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C---CCCCC-cEEEecCh
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N---ADDVG-EISLVDNA 107 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~---~~~~~-~i~~t~g~ 107 (452)
+..++.|+.+.+. ..|+.+.+++.+.+.. ... ..|. ..+..++|+++++++ | ++ ++ +|++|+|+
T Consensus 43 ~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~----~~~-~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~-~~~~I~it~Gs 115 (410)
T PRK06290 43 DMELIDMGVGEPDEMADESVVEVLCEEAKK----PEN-RGYA-DNGIQEFKEAAARYMEKVFGVKDID-PVTEVIHSIGS 115 (410)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----CCC-CCCC-CCCcHHHHHHHHHHHHHHcCCCcCC-CcceEEEccCH
Confidence 4568999988776 3455577777654321 111 1122 245677888888875 4 43 45 79999999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
++++..++.++ +++||.|++++|.|+..... ++..|.++..++++. +....+ ++.+++.+
T Consensus 116 ~~al~~~~~~~--------~~~gd~Vlv~~P~y~~~~~~----~~~~g~~v~~v~~~~--~~~~~~d~~~l~~~~----- 176 (410)
T PRK06290 116 KPALAMLPSCF--------INPGDVTLMTVPGYPVTGTH----TKYYGGEVYNLPLLE--ENNFLPDLDSIPKDI----- 176 (410)
T ss_pred HHHHHHHHHHh--------CCCCCEEEEeCCCCccHHHH----HHHcCCEEEEEecCC--CcCCcCCHHHHHHhh-----
Confidence 99999999876 58999999999999876444 455699999996531 112233 78888877
Q ss_pred CCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc---ccc---cc-ccCccEEEEcCcccCc
Q 012991 187 DGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI---KID---VK-EIGADFYVSNLHKWFF 256 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~---~~-~~~~d~~~~s~~K~l~ 256 (452)
..++++|++++|+||||.+++. ++|.++|++|++ ++|+|++++.... +.. +. ..+.++++.|++|. +
T Consensus 177 -~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~-~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~-~ 253 (410)
T PRK06290 177 -KEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNI-IVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKA-Y 253 (410)
T ss_pred -cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCe-EEEEecchhhceeCCCCcChhcCCCccccEEEEeechhh-c
Confidence 4578999999999999999985 577888999999 7999999864321 111 11 11356889999996 6
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|.+| +|+++.+++++.. + ..... .+....+...+ .++...+... .-.+..+++++++++.+
T Consensus 254 g~~GlRiG~ii~~~~l~~~-l-~~~~~-----------~~~~~~~~~~q---~aa~~~l~~~-~~~~~~~~~~~~~~~~l 316 (410)
T PRK06290 254 NMTGWRLAFVVGNELIVKA-F-ATVKD-----------NNDSGQFIAIQ---KAGIYALDHP-EITEKIREKYSRRLDKL 316 (410)
T ss_pred CCchhheEeEEeCHHHHHH-H-HHHHh-----------ccccCCcHHHH---HHHHHHhhCc-HHHHHHHHHHHHHHHHH
Confidence 7677 7999988877764 1 11100 00011111222 2233333321 12466777888889999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccC-ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVM-GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.+.|.+. ++.+..+.+ +.++|+.+|...... ...+..++.+.|.++.++.+.++.. -+
T Consensus 317 ~~~L~~~-g~~~~~p~g--~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~------------------~~ 375 (410)
T PRK06290 317 VKILNEV-GFKAEMPGG--TFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDD------------------AG 375 (410)
T ss_pred HHHHHhC-CCeecCCCe--eeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcc------------------cc
Confidence 9999886 776555543 667788887321000 0125678999998764555432221 13
Q ss_pred ceEEeccccc-CCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVY-NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~-~t~~di~~l~~~l~~~~~~ 442 (452)
+++||+++.. .++++.++++++|++.+.+
T Consensus 376 ~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (410)
T PRK06290 376 HFLRFSVTFEAKDEEEEDRILEEIKRRLSD 405 (410)
T ss_pred CeEEEEEEcccccccchhHHHHHHHHHHhh
Confidence 6999999743 4678899999999998864
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=219.70 Aligned_cols=345 Identities=13% Similarity=0.066 Sum_probs=231.0
Q ss_pred CCCCCCCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCC
Q 012991 17 KPKLTRCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINA 95 (452)
Q Consensus 17 ~~~~~~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 95 (452)
||.++...++.....+.......++.|+.+... ..|+.+.+++.+.+..... |... ...++|+.+++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~-------Y~~~-~~~~Lr~aia~~~~v 72 (360)
T PRK07392 1 MPRPAHGGNLAWAAAIAGCPPDAILDFSASINPLGPPESVIAAIQSALSALRH-------YPDP-DYRELRLALAQHHQL 72 (360)
T ss_pred CCcccCCccHHHHHHHcCCCcccEEEeCCcCCCCCCCHHHHHHHHHHHHHhhc-------CCCc-CHHHHHHHHHHHhCc
Confidence 466777777776666655444567889876443 5667788888876543221 2212 246899999999999
Q ss_pred CCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH---H
Q 012991 96 DDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE---E 172 (452)
Q Consensus 96 ~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~---~ 172 (452)
+ +++|++|+|+++++.+++.++ .+|+.|++++|.|......+ +..|++++.++++. +... .
T Consensus 73 ~-~~~I~it~G~~~~i~~~~~~l---------~~g~~vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~~~~ 136 (360)
T PRK07392 73 P-PEWILPGNGAAELLTWAGREL---------AQLRAVYLITPAFGDYRRAL----RAFGATVKELPLPL--DQPSPGLT 136 (360)
T ss_pred C-hhhEEECCCHHHHHHHHHHHh---------CCCCeEEEECCCcHHHHHHH----HHcCCeEEEEeccc--ccCCcccc
Confidence 6 899999999999999998865 46789999999998875554 45699999996531 1111 1
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---cc----ccccCc
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---ID----VKEIGA 244 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~~----~~~~~~ 244 (452)
. ++.+++. ..+++++++++|+||||.+++.++|.++++++++ +|+|+++..-..+ .. +....-
T Consensus 137 ~~~~~~~~~-------~~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~--~IiDE~y~~~~~~~~~~s~~~~~~~~~~ 207 (360)
T PRK07392 137 LRLQTLPPQ-------LTPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL--VVVDEAFMDFLPPDAEQSLIPCLAEYPN 207 (360)
T ss_pred cCHHHHHHh-------ccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE--EEEECchhhhccCccccchHHHhhcCCC
Confidence 1 3444432 2467899999999999999999999999999976 5669987532210 01 111123
Q ss_pred cEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHH
Q 012991 245 DFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDG 322 (452)
Q Consensus 245 d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~ 322 (452)
-+++.|++|. +|.+| +|++++++++++. + .... ...+.+...+.++..+++. .. -.+.
T Consensus 208 vi~i~S~SK~-~~l~GlRiG~~v~~~~~~~~-~-~~~~-------------~~~~~s~~~q~~~~~~l~~-~~---~~~~ 267 (360)
T PRK07392 208 LIILRSLTKF-YSLPGLRLGYAIAHPDRLQR-W-QQWR-------------DPWPVNGLAAAAAIAALAD-RD---FQQQ 267 (360)
T ss_pred EEEEEechhh-hcCCchheeeeeCCHHHHHH-H-HhhC-------------CCCCCCHHHHHHHHHHhcc-HH---HHHH
Confidence 4778899996 66566 8999888777664 2 1110 0012233333333333332 11 1344
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
.++.+++.++.+.+.|..++++.+.. +. ++++++.++ . ++.++.+.+.+++||.+.++..+..
T Consensus 268 ~~~~~~~~r~~l~~~L~~~~~~~~~~-~~--~~fl~~~~~-------~-~~~~l~~~ll~~~gv~v~pg~~f~~------ 330 (360)
T PRK07392 268 TWAWLPPAREALFQGLASLPGLTPLP-SA--ANFLLVQSQ-------G-SALQLQEKLLQQHRILIRDCLSFPE------ 330 (360)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEECC-CC--CCEEEEEcC-------C-CHHHHHHHHHhhCCEEEEeCCCCCC------
Confidence 45567778888888898776766542 32 678887764 1 5567888765556999987765421
Q ss_pred CCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 403 AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++||+++ +.++.+++.++|++++..
T Consensus 331 --------~~~~~iRi~~~---~~~~~~~l~~al~~~~~~ 359 (360)
T PRK07392 331 --------LGDRYFRVAVR---TEAENQRLLEALAAILAN 359 (360)
T ss_pred --------CCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 23579999998 577778888888887754
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=221.99 Aligned_cols=326 Identities=13% Similarity=0.085 Sum_probs=222.9
Q ss_pred CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 39 GVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 39 ~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
.+++|+.+..+ ..|+.+.+++.+....... |... ...++|++++++++++ +++|++|+|+++++.+++.+
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-------Y~~~-~~~~Lr~~ia~~~~~~-~~~I~it~G~~~~l~~~~~~ 103 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAAAEIWK-------YGDP-ENHDLRHALAAHHGVA-PENIMVGEGIDGLLGLIVRL 103 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHHHhhc-------CCCC-ccHHHHHHHHHHhCCC-HHHEEEcCCHHHHHHHHHHH
Confidence 34689887665 5667788988876543322 2111 2578999999999996 78999999999999999987
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
+ +++||.|++++|.|+.....+ ...|.+++.+++ +++...++.+++.+. ..++++|+++
T Consensus 104 ~--------~~~gd~vlv~~p~y~~~~~~~----~~~g~~~~~vp~----~~~~~~~~~l~~~~~-----~~~~~~i~l~ 162 (369)
T PRK08153 104 Y--------VEPGDPVVTSLGAYPTFNYHV----AGFGGRLVTVPY----RDDREDLDALLDAAR-----RENAPLVYLA 162 (369)
T ss_pred h--------cCCCCEEEECCCcchHHHHHH----HHcCCeEEEeeC----CCCCCCHHHHHHHhc-----ccCCcEEEEe
Confidence 6 589999999999999876554 345889998854 222222677766653 3678999999
Q ss_pred ccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCc---cccccc-cCccEEEEcCcccCcCCCC--cEEEEEecC
Q 012991 198 HITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSI---KIDVKE-IGADFYVSNLHKWFFCPPS--VAFLYCRKS 269 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~---~~~~~~-~~~d~~~~s~~K~l~g~~G--~G~l~~~~~ 269 (452)
+|+||||.++|.+++.++++.+ ++ ++|+|++++.... ...+.. ....+++.|++|. +|.+| +|+++++++
T Consensus 163 ~P~NPtG~~~~~~~l~~l~~~~~~~~-~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~-~g~~GlRiG~~v~~~~ 240 (369)
T PRK08153 163 NPDNPMGSWHPAADIVAFIEALPETT-LLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKA-YGLAGARVGYAIGAPG 240 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCCCc-EEEEeCchhhhcCcccchhhhhcCCCEEEEecchHh-ccCcchheeeeecCHH
Confidence 9999999999998888877654 89 7999999753221 111111 1234778899996 67666 799998877
Q ss_pred ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 270 ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
+++. +. .... ..+.+...+.++.++++. .+ -.+.+++..++.++++.+.|.+. ++... |
T Consensus 241 ~~~~-l~-~~~~-------------~~~~s~~~q~~~~~~l~~-~~---~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p 299 (369)
T PRK08153 241 TIKA-FD-KVRN-------------HFGMNRIAQAAALAALKD-QA---YLAEVVGKIAAARDRIAAIARAN-GLTPL-P 299 (369)
T ss_pred HHHH-HH-Hhhc-------------CCCCCHHHHHHHHHHhcC-HH---HHHHHHHHHHHHHHHHHHHHHHC-CCccC-C
Confidence 7664 11 1100 012233333333333321 11 25566777778888888888765 66533 3
Q ss_pred cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 350 PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
.. ++++++.++. +...+.++.+.|.+ +||.++..... ..++++|+++. +.+|+
T Consensus 300 ~~--~~f~~~~~~~-----~~~~a~~l~~~l~~-~Gi~v~~p~~~----------------~~~~~iRis~~---~~~~~ 352 (369)
T PRK08153 300 SA--TNFVAIDCGR-----DGAFARAVLDGLIA-RDIFVRMPGVA----------------PLDRCIRVSCG---PDEEL 352 (369)
T ss_pred Cc--CcEEEEECCC-----CcccHHHHHHHHHH-CCeEEeeCCCC----------------CCCCeEEEecC---CHHHH
Confidence 33 6788877641 23456788888876 49998521111 12469999998 79999
Q ss_pred HHHHHHHHHHHhccc
Q 012991 430 EKFRDAVILLVEEGQ 444 (452)
Q Consensus 430 ~~l~~~l~~~~~~~~ 444 (452)
++++++|++++...+
T Consensus 353 ~~~~~al~~~~~~~~ 367 (369)
T PRK08153 353 DLFAEALPEALEAAR 367 (369)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999986543
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=226.40 Aligned_cols=338 Identities=16% Similarity=0.145 Sum_probs=228.3
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-----CCCCCCcEEEecChhHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-----NADDVGEISLVDNATTA 110 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~~~~~i~~t~g~t~a 110 (452)
+.++++|+.+.++ +.|+.+.+++.+.... ...|....+..++|+.+++++ +++ +++|++|+|+++|
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~i~~t~G~~~a 100 (397)
T PRK07568 29 GIKVYHLNIGQPDIKTPEVFFEAIKNYDEE-------VLAYSHSQGIPELREAFAKYYKKWGIDVE-PDEILITNGGSEA 100 (397)
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHhcC-------CcCcCCCCCCHHHHHHHHHHHHHhCCCCC-cceEEEcCChHHH
Confidence 4568999998876 5678788887765321 122344556788899999987 354 6899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH-H-HHHHHHHHhccccCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE-I-INEFKKGIEKGKKDG 188 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~-~~~l~~~i~~~~~~~ 188 (452)
+.+++.++ +++||+|++++|.|...... ++..|.+++.++++. ++... . .+.+++++ .
T Consensus 101 l~~~~~~l--------~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v~~~~--~~g~~~~~~~~l~~~~------~ 160 (397)
T PRK07568 101 ILFAMMAI--------CDPGDEILVPEPFYANYNGF----ATSAGVKIVPVTTKI--EEGFHLPSKEEIEKLI------T 160 (397)
T ss_pred HHHHHHHh--------cCCCCEEEEecCCCccHHHH----HHHcCCEEEEeecCc--ccCCCCCCHHHHHHhc------C
Confidence 99999876 47899999999988764332 455699999886521 11111 1 58888888 5
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----c---ccccc-cCccEEEEcCcccCcC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----K---IDVKE-IGADFYVSNLHKWFFC 257 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~---~~~~~-~~~d~~~~s~~K~l~g 257 (452)
+++++|++++|+||||.+++ +++|+++|+++|+ ++|+|++++.... . ..+.. ....+++.|++|. +|
T Consensus 161 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~-~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~-~~ 238 (397)
T PRK07568 161 PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDL-FLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKR-YS 238 (397)
T ss_pred ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCc-EEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhh-cc
Confidence 68899999999999999986 6788999999999 7999999753211 1 11111 1223778899996 55
Q ss_pred CCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 258 ~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
++| +|++++. ++++.. + .... .. ..+.+...+.++..+++.... -++.+++.+++.++.+
T Consensus 239 ~~G~R~G~~~~~~~~~~~~-~-~~~~----------~~--~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~l 301 (397)
T PRK07568 239 ACGARIGCLISKNKELIAA-A-MKLC----------QA--RLSPPTLEQIGAAALLDTPES---YFDEVREEYKKRRDIL 301 (397)
T ss_pred CCCcceEEEecCCHHHHHH-H-HHHh----------hc--cCCCCcHHHHHHHHHhhCCHH---HHHHHHHHHHHHHHHH
Confidence 555 7888774 455543 1 0000 00 012233333334334432111 3566777788888999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhh-----cceEeeecccCCCCCCCCCCCCCCCC
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR-----FGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
.+.|.+++++.+..|.+ +.++|+.++. .+..++.+.|.++ .||.+.++..+...+
T Consensus 302 ~~~L~~~~~~~~~~p~g--~~~~~~~l~~-------~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~----------- 361 (397)
T PRK07568 302 YEELNKIPGVVCEKPKG--AFYIIAKLPV-------DDAEDFAKWLLTDFNYNGETVMVAPASGFYATP----------- 361 (397)
T ss_pred HHHHhcCCCceecCCCc--ceEEEEecCC-------CCHHHHHHHHHhhcccccceEEEeCchHhcCCC-----------
Confidence 99998876666555543 5678888862 2566788877653 489987665442110
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
....+++|++++. +.++++..++.|++.++..
T Consensus 362 ~~~~~~iRls~~~--~~~~~~~~~~~l~~~l~~~ 393 (397)
T PRK07568 362 GLGKNEIRIAYVL--NEEDLKRAMEILKEALEKY 393 (397)
T ss_pred CCCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHh
Confidence 1234799999974 6799999999999888653
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=221.08 Aligned_cols=339 Identities=14% Similarity=0.136 Sum_probs=230.9
Q ss_pred CCCCeEEeccCC-CCC-CcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGS-FGS-CPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~-~~~-~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.+++++.|..+. .+. .++.+.+++.+.+...... .......+..++.+++++.++++++.+ ..+++++| ++++.
T Consensus 31 ~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~--~~i~~~sG-~~a~~ 107 (385)
T TIGR01825 31 NGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTE--AALVFQSG-FNTNQ 107 (385)
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCC--cEEEECcH-HHHHH
Confidence 567888888764 454 6677888888877543211 111122344677899999999999974 55666655 66777
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceE
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
.++.++ +++||.|+++++.|++....+.. .|.++..++ ..+ ++++++.+++.. .++++
T Consensus 108 ~a~~~~--------~~~gd~vi~~~~~~~~~~~~~~~----~g~~~~~~~----~~d----~~~l~~~l~~~~--~~~~~ 165 (385)
T TIGR01825 108 GVLSAL--------LRKGDIVLSDELNHASIIDGLRL----TKATKKIYK----HAD----MDDLDRVLRENP--SYGKK 165 (385)
T ss_pred HHHHHh--------CCCCCEEEEEccccHHHHHHHHh----cCCceEEeC----CCC----HHHHHHHHHhhc--cCCCe
Confidence 777765 58899999999999987665543 477776652 112 456666664321 24789
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---------ccccccCccEEEEcCcccCcCCCCcEE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---------IDVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
+|++++++|++|.+.|+++|.++|++||+ ++|+|++++.|..+ +++. .+.|+++.|++|++ |+.| |+
T Consensus 166 ~v~~~~v~~~tG~~~~~~~i~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~-~~~g-G~ 241 (385)
T TIGR01825 166 LIVTDGVFSMDGDVAPLPEIVELAERYGA-VTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAI-GVVG-GY 241 (385)
T ss_pred EEEEecCCcCCCCccCHHHHHHHHHHhCC-EEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHh-hcCC-CE
Confidence 99999999999999999999999999999 79999999766432 2232 46789999999985 6665 78
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
++.++++++. + ...... + ...+..+...++++.++++.+.+ ..++.++.+++++++.+.|.++ +
T Consensus 242 ~~~~~~~~~~-~-~~~~~~-~--------~~~~~~~~~~~~a~~~al~~~~~----~~~~~~~~~~~~~~l~~~L~~~-g 305 (385)
T TIGR01825 242 AAGHKELIEY-L-KNRARP-F--------LFSTAQPPAVVAALAAAVDELQR----SPELMERLWDNTRFFKAGLGKL-G 305 (385)
T ss_pred EecCHHHHHH-H-HHhCcc-c--------cccCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHc-C
Confidence 8777776654 1 111000 0 00112222344555666665543 1346777788899999999886 7
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
+++..+.. +++.+.++ ...+..++++.|.++ ||.++....+.. .....++|++++.+
T Consensus 306 ~~~~~~~~---~~~~~~~~------~~~~~~~~~~~L~~~-gi~v~~~~~~~~-------------~~~~~~iRi~~~~~ 362 (385)
T TIGR01825 306 YDTGGSET---PITPVVIG------DEKAAQEFSRRLFDE-GIFAQSIVFPTV-------------PRGTARIRNIPTAE 362 (385)
T ss_pred CCCCCCCC---CEEEEEEC------CHHHHHHHHHHHHHC-CcEEcccCCCCC-------------CCCCceEEEEEcCC
Confidence 77665432 35555443 233567899999876 999864332211 12336899999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 012991 424 NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~ 442 (452)
++++|+++++++|+++++.
T Consensus 363 ~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 363 HTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998854
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=223.22 Aligned_cols=347 Identities=13% Similarity=0.083 Sum_probs=225.5
Q ss_pred HHHHHhhhc----cCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC
Q 012991 26 EAEIRDEFS----HHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD 96 (452)
Q Consensus 26 ~~~ir~~~~----~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~ 96 (452)
+..+++.+. ..+..++.|+.+.+. +.|+.+.+++.+.+.... .|....+..++|+.+++++ |.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~-------~Y~~~~G~~~lr~~ia~~~~~~~g~~ 85 (396)
T PRK09147 13 FEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLDGLA-------SYPTTAGLPALREAIAAWLERRYGLP 85 (396)
T ss_pred HHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhhhhc-------CCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 355555543 246789999888776 456778888877653321 2222334556677777654 632
Q ss_pred --CC-CcEEEecChhHHHHHHHHHhhcccccCCCCC---CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh
Q 012991 97 --DV-GEISLVDNATTAAAIVLQQIGRGFTEGRFHR---NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE 170 (452)
Q Consensus 97 --~~-~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~---g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~ 170 (452)
++ ++|++|+|+++++.+++.++ +++ |++|+++.|.|......+ +..|++++.++++ .++.
T Consensus 86 ~~~~~~~i~it~G~~~al~~~~~~l--------~~~~~~gd~vlv~~P~y~~~~~~~----~~~g~~~~~vp~~--~~~~ 151 (396)
T PRK09147 86 ALDPATQVLPVNGSREALFAFAQTV--------IDRDGPGPLVVCPNPFYQIYEGAA----LLAGAEPYFLNCD--PANN 151 (396)
T ss_pred cCCccceEEECCChHHHHHHHHHHH--------cCCCCCCCEEEEcCCCccchHHHH----HhcCCEEEEeccC--cccc
Confidence 24 48999999999999999987 477 889999999998765444 4569999999652 1122
Q ss_pred HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc-----ccc-c-
Q 012991 171 EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI-----KID-V- 239 (452)
Q Consensus 171 ~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~-~- 239 (452)
..+ ++.+++.+ .++++++++++|+||||.+++ +++|+++|++|++ ++|+|++++.... +.. .
T Consensus 152 ~~~d~~~l~~~~------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~ 224 (396)
T PRK09147 152 FAPDFDAVPAEV------WARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGF-VIASDECYSEIYFDEAAPPLGLLE 224 (396)
T ss_pred CccCHHHHHHHH------hhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCe-EEEeeccccccccCCCCCCchhhh
Confidence 234 88888877 357899999999999999997 5567888999999 7999999864321 110 0
Q ss_pred -------cccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 240 -------KEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 240 -------~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
...+-.+++.|++|. ++.+| +|+++.++++++. + ..... ......+...+.+..+++
T Consensus 225 ~~~~~~~~~~~~vi~~~S~SK~-~~~~GlRiG~~~~~~~l~~~-~-~~~~~-----------~~~~~~~~~~q~a~~~~~ 290 (396)
T PRK09147 225 AAAELGRDDFKRLVVFHSLSKR-SNVPGLRSGFVAGDAALLKK-F-LLYRT-----------YHGCAMPPAVQAASIAAW 290 (396)
T ss_pred hccccCccccccEEEEeccccc-cCCccceeeeecCCHHHHHH-H-HHHhh-----------hcccCCCHHHHHHHHHHh
Confidence 011223788899994 66666 8998888777764 1 11100 000112222222222222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI 390 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~ 390 (452)
.. ..-+.+.++.+++.++.+.+.|.+. +.+..|++ +.++|+.++ .+..++++.|.++.||.+.+
T Consensus 291 ---~~-~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~--g~f~~~~~~--------~~~~~~~~~ll~~~gv~v~p 354 (396)
T PRK09147 291 ---ND-EAHVRENRALYREKFDAVTPILAPV--LDVQLPDA--GFYLWAKVP--------GDDTEFARRLYADYNVTVLP 354 (396)
T ss_pred ---cc-hhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCe--eEEEEEECC--------CCHHHHHHHHHHhCCEEEeC
Confidence 11 1135566777788888888888764 44444443 888999885 23467777776556999976
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 391 HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+..+.... .. .....+++||+++. ++++++..+++|++++
T Consensus 355 g~~f~~~~-~~-------~~~~~~~iRi~~~~--~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 355 GSYLAREA-HG-------VNPGAGRVRIALVA--PLAECVEAAERIVDFC 394 (396)
T ss_pred Cccccccc-cC-------CCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 65442100 00 01235799999985 6788999999998876
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=219.21 Aligned_cols=288 Identities=15% Similarity=0.161 Sum_probs=198.2
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
+..+..+++++.+++++|.+ +.+++++|+ .|+..++..+ .++++.|+++..+|.++..++... .+.
T Consensus 53 g~~~~~~~~e~~la~~~~~~--~~l~~~sG~-~a~~~~~~~~--------~~~~d~ii~d~~~H~sv~~~~~~~---~~~ 118 (370)
T PRK05937 53 GPSSLLDDLEHKIAHFHGAP--EAFIVPSGY-MANLGLCAHL--------SSVTDYVLWDEQVHISVVYSLSVI---SGW 118 (370)
T ss_pred CChHHHHHHHHHHHHHhCCC--eEEEECChH-HHHHHHHHHh--------CCCCCEEEEEhhhhHHHHHHHHHc---CCc
Confidence 45778999999999999995 455555555 5665544433 356789999999999998887653 233
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc
Q 012991 157 SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK 236 (452)
Q Consensus 157 ~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~ 236 (452)
.+ .+ +..+ +++|++.++......+++.+|++++++|++|.+.|+++|.++|+++|+ ++++|++|+.|..+
T Consensus 119 ~~-~~----~~~d----~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~-~livDea~~~G~~g 188 (370)
T PRK05937 119 HQ-SF----RHND----LDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHA-HLIVDEAHAMGIFG 188 (370)
T ss_pred eE-Ee----cCCC----HHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCC-EEEEECCccccccC
Confidence 33 23 3222 577777775322112456788899999999999999999999999999 89999999998876
Q ss_pred cccc----ccC---ccEEEEcCcccCcCCCCcEEEEEecCccccCCC---CCceeccCCCCcccccccccccCccccccH
Q 012991 237 IDVK----EIG---ADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH---HPVVSHEFGNGLPIESAWIGTRDYSAQLVI 306 (452)
Q Consensus 237 ~~~~----~~~---~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (452)
.+.. .++ .++++.|++|. +|+.|.|+++. ++.... +. .++. +.++.+...+.++
T Consensus 189 ~~g~g~~~~~~~~~~~~~~~tlsK~-~g~~G~~vl~~-~~~~~~-~~~~~~~~~-------------~s~~~~~~~~~a~ 252 (370)
T PRK05937 189 DDGKGFCHSLGYENFYAVLVTYSKA-LGSMGAALLSS-SEVKQD-LMLNSPPLR-------------YSTGLPPHLLISI 252 (370)
T ss_pred CCCCchHHhhCCCCCcEEEEechhh-hhcCceEEEcC-HHHHHH-HHHhCCCCe-------------ecCCCCHHHHHHH
Confidence 6542 222 23667889995 78888776654 433322 11 1110 1123344456777
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcce
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGV 386 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 386 (452)
.++++++.+. + +..+++++++++++.+.|... .+ +....+.++ +.+...+.+.|.++ ||
T Consensus 253 ~aal~~l~~~--~-~~~~~~l~~l~~~l~~~l~~~------~~----~~~~~i~~~-------~~~~~~~~~~L~~~-gi 311 (370)
T PRK05937 253 QVAYDFLSQE--G-ELARKQLFRLKEYFAQKFSSA------AP----GCVQPIFLP-------GISEQELYSKLVET-GI 311 (370)
T ss_pred HHHHHHHHhC--c-HHHHHHHHHHHHHHHHhcCCC------CC----CCEEEEEeC-------ChhHHHHHHHHHHC-Ce
Confidence 8888888753 5 556777888888887766421 11 112224443 23456788888664 99
Q ss_pred EeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 387 EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+...+.+ ..+++|+|++.++|++||++++++|+++++.
T Consensus 312 ~v~~~~~~-----------------~~~~iRis~~~~~t~edid~l~~~L~~~~~~ 350 (370)
T PRK05937 312 RVGVVCFP-----------------TGPFLRVNLHAFNTEDEVDILVSVLATYLEK 350 (370)
T ss_pred eEEeeCCC-----------------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 98754432 2358999999999999999999999998864
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=226.42 Aligned_cols=343 Identities=11% Similarity=0.072 Sum_probs=228.4
Q ss_pred CCCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCCCcEEEe
Q 012991 36 HQHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDVGEISLV 104 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~i~~t 104 (452)
.+.+++.|+.|.+. +.|+.+.+++.+.+... ....|....+..++|++++++++ ++ +++|++|
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t 102 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSN-----KFNGYAPTVGLPQARRAIAEYLSRDLPYKLS-LDDVFIT 102 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcC-----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-cccEEEe
Confidence 56789999999885 56788888888766431 11234444567778888888874 33 6899999
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
+|+++|+.+++.++ +++||+|++++|.|+...... ...|++++.+++.. ++...+ ++.+++.+
T Consensus 103 ~G~~~al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~i~~~~--~~~~~~d~~~l~~~~-- 166 (409)
T PLN02656 103 SGCTQAIDVALSML--------ARPGANILLPRPGFPIYELCA----AFRHLEVRYVDLLP--EKGWEVDLDAVEALA-- 166 (409)
T ss_pred CChHHHHHHHHHHH--------hCCCCeEEEeCCCCCcHHHHH----HHcCCEEEEEeCCC--cCCCCCCHHHHHHHh--
Confidence 99999999999976 489999999999998654333 44699999996521 122234 78888888
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc------cc-cccccCccEEEEcCcc
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI------KI-DVKEIGADFYVSNLHK 253 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~------~~-~~~~~~~d~~~~s~~K 253 (452)
.+++++|++++|+||||.+++ +++|+++|+++++ ++|+|++++.... ++ .+.....-+++.|++|
T Consensus 167 ----~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK 241 (409)
T PLN02656 167 ----DQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKI-LVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSK 241 (409)
T ss_pred ----ccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccch
Confidence 567899999999999999975 6678899999999 7999999863221 11 1111223477889999
Q ss_pred cCcCCCC--cEEEEEec--------CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 254 WFFCPPS--VAFLYCRK--------SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 254 ~l~g~~G--~G~l~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
. ++.+| +|++++.+ +++.. + ... ... .+.++...+.++..+++.... ..++..
T Consensus 242 ~-f~~pGlRiG~~i~~~~~~~~~~~~~~~~-~-~~~-----------~~~-~~~~s~~~q~a~~~~l~~~~~--~~~~~~ 304 (409)
T PLN02656 242 R-WIVPGWRLGWFVTTDPSGSFRDPKIVER-I-KKY-----------FDI-LGGPATFIQAAVPTILEQTDE--SFFKKT 304 (409)
T ss_pred h-ccCcceeEEEEEEeCcccccccHHHHHH-H-HHH-----------Hhh-hcCCCHHHHHHHHHHHhcCcH--HHHHHH
Confidence 5 66677 88888742 33332 1 000 000 012233333333333331000 136667
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCc-CCCcccccceEEEEcCCccccCChhhHHHHH-HHHhhhcceEeeecccCCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLR-GHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
+++++++++.+.+.|..++++.. ..|.+ +.++|+.++.... .+..+..++. +.| ++.||.+.++..+
T Consensus 305 ~~~~~~~r~~~~~~L~~~~~~~~~~~p~g--g~~~w~~l~~~~~-~~~~~~~~~~~~~l-~~~gV~v~pg~~f------- 373 (409)
T PLN02656 305 INILKQSSDICCDRIKEIPCITCPHKPEG--SMAVMVKLNLSLL-EDISDDIDFCFKLA-REESVIILPGTAV------- 373 (409)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCCcCCCe--EEEEEEecchhhc-CCCCCHHHHHHHHH-HhCCEEEecchhc-------
Confidence 77788888889999987644432 23333 7788888752100 0011233444 455 4469999876554
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
..++++||+++. +.++++..++.|++++....
T Consensus 374 ---------g~~~~iRi~~~~--~~e~l~eal~rl~~~~~~~~ 405 (409)
T PLN02656 374 ---------GLKNWLRITFAA--DPSSLEEALGRIKSFYLRHS 405 (409)
T ss_pred ---------CCCCeEEEEeCC--CHHHHHHHHHHHHHHHHHhc
Confidence 225799999995 78889999999999887543
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=225.83 Aligned_cols=342 Identities=13% Similarity=0.117 Sum_probs=224.4
Q ss_pred CCCCeEEeccCCCC----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CCCCCcEEEec
Q 012991 36 HQHGVARINNGSFG----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--ADDVGEISLVD 105 (452)
Q Consensus 36 ~~~~~~~l~~~~~~----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~i~~t~ 105 (452)
.+.+++.|+.+.++ +.|+.+.+++.+.+... .. .|....+..++|+++++++ | + ++++|++|+
T Consensus 28 ~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~----~~--~Y~~~~g~~~lr~~ia~~~~~~~g~~~-~~~~i~it~ 100 (398)
T PRK08363 28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEG----HN--YYGPSEGLPELREAIVKREKRKNGVDI-TPDDVRVTA 100 (398)
T ss_pred cCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcC----CC--CCCCCCCcHHHHHHHHHHHHHhcCCCC-ChhhEEEeC
Confidence 45689999988873 46777888887765421 11 2334456788888888887 3 4 368999999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCC-hHHH-HHHHHHHHhc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLAS-EEEI-INEFKKGIEK 183 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~-~~~~-~~~l~~~i~~ 183 (452)
|+++|+.+++.++ +++||+|++++|+|.+....+ ...|.+++.++. .++ ...+ .+.+++.+
T Consensus 101 G~~~al~~~~~~~--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~v~~~~---~~~~~~~~d~~~l~~~~-- 163 (398)
T PRK08363 101 AVTEALQLIFGAL--------LDPGDEILIPGPSYPPYTGLV----KFYGGVPVEYRT---IEEEGWQPDIDDIRKKI-- 163 (398)
T ss_pred CHHHHHHHHHHHh--------CCCCCEEEEcCCCCcchHHHH----HHcCCEEEEecc---ccccCCcCCHHHHHhhC--
Confidence 9999999999876 589999999999999875543 456887777631 111 1223 78888888
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc------ccccccCccEEEEcCccc
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK------IDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~------~~~~~~~~d~~~~s~~K~ 254 (452)
.+++++|++++++||||..++ +++|.++|+++|+ ++|+|++++..... ..+......+++.|++|+
T Consensus 164 ----~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~-~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~ 238 (398)
T PRK08363 164 ----TEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDL-PVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKV 238 (398)
T ss_pred ----CcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCe-EEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhc
Confidence 567899999999999999998 7788999999999 79999997642211 111111124667899996
Q ss_pred CcCCCC--cEEEEE--ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYC--RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 255 l~g~~G--~G~l~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
++.+| +|++++ ++++++. +....... ... ....+...+.++..++....+ .++..+++++++
T Consensus 239 -~~~~GlRiG~~~~~~~~~~~~~-l~~~~~~~-------~~~--~~~~s~~~q~~~~~~l~~~~~---~l~~~~~~~~~~ 304 (398)
T PRK08363 239 -YFATGWRLGYIYFVDPEGKLAE-VREAIDKL-------ARI--RLCPNTPAQFAAIAGLTGPMD---YLEEYMKKLKER 304 (398)
T ss_pred -cCCccceEEEEEEeCcHHHHHH-HHHHHHHH-------hcc--cccCChHHHHHHHHHHhCChH---HHHHHHHHHHHH
Confidence 55555 788887 4444432 11110000 000 011222233333333322111 356667778888
Q ss_pred HHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
++.+.+.|.+++++.+..|.. +.++|+.++.. ...+..+++..+.+++||.+.++..+..
T Consensus 305 ~~~l~~~L~~~~~~~~~~p~g--~~~~~~~l~~~----~~~~~~~~~~~~l~~~gV~v~~g~~f~~-------------- 364 (398)
T PRK08363 305 RDYIYKRLNEIPGISTTKPQG--AFYIFPRIEEG----PWKDDKEFVLDVLHEAHVLFVHGSGFGE-------------- 364 (398)
T ss_pred HHHHHHHHhcCCCCEecCCCe--EEEEEEEeccC----CCCCHHHHHHHHHHhCCEEEeCchhhCC--------------
Confidence 889999998876766655443 55666677521 0113345544443446999977665421
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+++.. +.++++..++.|++++..
T Consensus 365 ~~~~~iRis~~~--~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 365 YGAGHFRLVFLP--PVEILEEAMDRFEEFMRE 394 (398)
T ss_pred CCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 235799999963 788899999999988765
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=230.96 Aligned_cols=351 Identities=15% Similarity=0.135 Sum_probs=231.1
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCchh-h-hhhhhHHHHH-HHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDDF-Y-FNSLRKGILE-SRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~~-~-~~~~~~~~~~-~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.+.+.|..+ .+..++.|++++...+.... ++++.. + +....+.+++ +++.+++++|++ ...+++ +|||+|+.
T Consensus 19 ~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~-~~~v~~-~sgt~a~~ 95 (402)
T cd00378 19 RETLELIAS-ENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE-YANVQP-HSGSQANL 95 (402)
T ss_pred HhCeeeecc-CCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC-ceeeec-CCcHHHHH
Confidence 456777644 55557779999987653222 222222 1 1222233344 677889999996 344444 46789999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHH-HHHhcCcEEEEEeCCCCCCC-hHHH-HHHHHHHHhccccCCC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQA-YVTRAGGSVVEVQLPFPLAS-EEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~-~a~~~g~~v~~~~~~~~~~~-~~~~-~~~l~~~i~~~~~~~~ 189 (452)
.++.++ +++||+|++++++|.++...+.. .++..|.++..++++ .+. ++.+ ++++++.++ .+
T Consensus 96 ~~l~~l--------~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~id~~~l~~~i~-----~~ 160 (402)
T cd00378 96 AVYFAL--------LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYG--VDPETGLIDYDALEKMAL-----EF 160 (402)
T ss_pred HHHHHh--------cCCCCEEEEecCccCccccccccccccccceeEEEecCC--cCcccCCcCHHHHHHHHH-----hC
Confidence 999987 58999999999999876443211 124457777777552 221 3455 899999885 35
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCCCcEEE
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
++++|+++++++ |...|+++|+++|+++|+ ++|+|++|+.|.. +.++. ++|++++|+|||+.|+.| |++
T Consensus 161 ~~~~v~~~~~~~--~~~~~~~~I~~l~~~~~~-~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~g-g~i 234 (402)
T cd00378 161 KPKLIVAGASAY--PRPIDFKRFREIADEVGA-YLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLI 234 (402)
T ss_pred CCCEEEecCccc--CCCcCHHHHHHHHHhcCC-EEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCCc-eEE
Confidence 788999888765 567799999999999999 7999999876543 22333 579999999999878886 666
Q ss_pred EEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 265 YCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 265 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
+.++ ++.+. +..... ....+++....+.++..++...... +.+..+++++++++++.+.|.+. |
T Consensus 235 ~~~~~~~~~~-l~~~~~-----------~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g 299 (402)
T cd00378 235 LTRKGELAKK-INSAVF-----------PGLQGGPHLHVIAAKAVALKEALEP--EFKAYAKQVVENAKALAEALKER-G 299 (402)
T ss_pred EeccHHHHHH-HHHHhC-----------ccccCCchHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 6766 66554 211000 0011333333444444455544321 45677888999999999999887 7
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
+.+...+. .++++|+.++. .+.+...+.+.|.+ +||.+.....+..... ...+.++|++++..
T Consensus 300 ~~~~~~~~-~~~~v~v~~~~-----~~~~~~~~~~~l~~-~gI~v~~~~~p~~~~~----------~~~~~~lRi~~~~~ 362 (402)
T cd00378 300 FKVVSGGT-DNHLVLVDLRP-----KGITGKAAEDALEE-AGITVNKNTLPWDPSS----------PFVPSGIRIGTPAM 362 (402)
T ss_pred CeEeecCC-CCeEEEEeCCc-----cCCCHHHHHHHHHH-cCcEEcCCcCCCCCCC----------CCCCCeeEecCHHH
Confidence 77653222 27788888752 12345567777754 6999965443322100 01346899999775
Q ss_pred C----CHHHHHHHHHHHHHHHhccc
Q 012991 424 N----TLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 424 ~----t~~di~~l~~~l~~~~~~~~ 444 (452)
+ +.+||+.+++.|++++.+.+
T Consensus 363 ~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 363 TTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhccc
Confidence 4 69999999999999998776
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=223.61 Aligned_cols=343 Identities=15% Similarity=0.133 Sum_probs=229.4
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t 108 (452)
.+.+++.|+.+.+. ..|+.+.+.+.+.... . ..+.|....+..++|+++++++ |.+ +++ ++++|+|++
T Consensus 27 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~ 101 (395)
T PRK08175 27 RGEDIIDFSMGNPDGPTPPHIVEKLCEVAQR----P-DTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSK 101 (395)
T ss_pred cCCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----C-CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcH
Confidence 45778899877665 3455566666554421 1 1123444455677777777765 432 245 799999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDG 188 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 188 (452)
+++.+++.++ +++||+|++++|.|+.....+.. .|.++..++++ .++.+.++++++++.. .
T Consensus 102 ~~l~~~~~~~--------~~~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~~----~~~~~~~~l~~~l~~~---~ 162 (395)
T PRK08175 102 EGLAHLMLAT--------LDHGDTVLVPNPSYPIHIYGAVI----AGAQVRSVPLV----EGVDFFNELERAIRES---Y 162 (395)
T ss_pred HHHHHHHHHh--------CCCCCEEEEcCCCCcchHHHHHH----cCCeEEEEecc----cCCCcHHHHHHHHhhc---c
Confidence 9999988866 58999999999999987666543 59999988652 2222367788777532 3
Q ss_pred CceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEcCcccCcC
Q 012991 189 KMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSNLHKWFFC 257 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~l~g 257 (452)
+++++|++++|+||||.+++. ++|+++|+++|+ ++|+|++++.... ...+.. .+..+++.|++|. +|
T Consensus 163 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i-~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g 240 (395)
T PRK08175 163 PKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDV-LVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKS-YN 240 (395)
T ss_pred CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCc-EEEEecchHhhccCCCCCcchhcCCCcccCEEEEeecccc-cc
Confidence 578999999999999999987 688899999999 7999998753221 111111 1234677899996 56
Q ss_pred CCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 258 ~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
.+| +|+++.++++++. +. ... .....+.+...+.+...+++.... -++.++++++++++++.
T Consensus 241 ~pGlRiG~~~~~~~l~~~-~~-~~~-----------~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~ 304 (395)
T PRK08175 241 MAGWRIGFMVGNPELVSA-LA-RIK-----------SYHDYGTFTPLQVAAIAALEGDQQ---CVRDIAEQYKRRRDVLV 304 (395)
T ss_pred CcchhheeeeCCHHHHHH-HH-HHH-----------hhcccCCCcHHHHHHHHHHhCcHH---HHHHHHHHHHHHHHHHH
Confidence 666 7999888877765 21 110 000011222222222233322111 25667778888889999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.+. ++.+..+.+ ++++|+.+++.. ...++.++++.|.++.||.+.++..+.. ..+++
T Consensus 305 ~~L~~~-~~~~~~p~~--g~~i~i~l~~~~---~~~~~~~~~~~l~~~~gv~v~p~~~f~~--------------~~~~~ 364 (395)
T PRK08175 305 KGLHEA-GWMVEMPKA--SMYVWAKIPEPY---AAMGSLEFAKKLLNEAKVCVSPGIGFGD--------------YGDTH 364 (395)
T ss_pred HHHHHc-CCcccCCCE--EEEEEEECCccc---CCCCHHHHHHHHHHhCCEEEeCchhhCc--------------CCCCe
Confidence 999887 666554444 789999987311 0124678888776557999977655422 23569
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|+++. .+.+.++..++.|++++.+
T Consensus 365 lRis~~--~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 365 VRFALI--ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence 999997 3788899999999998865
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=221.22 Aligned_cols=319 Identities=18% Similarity=0.185 Sum_probs=219.3
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
+++++.|+.+... ..|+.+.+++.+.+..... |.......++|++++++++++ +++|++|+|+++++.+++
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------Y~~~~g~~~lr~aia~~~~~~-~~~I~it~Ga~~al~~~~ 92 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARLGDLAA-------YPSTEDERRARAAVAARHGRT-PDEVLLLAGAAEGFALLA 92 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhHhhc-------CCCccchHHHHHHHHHHhCcC-hhhEEECCCHHHHHHHHH
Confidence 5678999887764 5677789999887654322 222345788999999999996 899999999999999887
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
. + ++ +.+++..|+|...... ++..|.+++.+++ +++..+ .+ .+ .++++++
T Consensus 93 ~-l---------~~-~~viv~~P~y~~~~~~----~~~~G~~i~~v~~----~~~~~~d~~----~l------~~~~~~i 143 (349)
T PRK07908 93 R-L---------RP-RRAAVVHPSFTEPEAA----LRAAGIPVHRVVL----DPPFRLDPA----AV------PDDADLV 143 (349)
T ss_pred h-c---------CC-CeEEEeCCCChHHHHH----HHHcCCEEEeecc----CcccCcChh----Hh------ccCCCEE
Confidence 7 4 45 4566778888765443 4557999999854 322222 33 23 3567899
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC--Cccccccc--cCccEEEEcCcccCcCCCC--cEEEEEec
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG--SIKIDVKE--IGADFYVSNLHKWFFCPPS--VAFLYCRK 268 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g--~~~~~~~~--~~~d~~~~s~~K~l~g~~G--~G~l~~~~ 268 (452)
++++++||||.++|.++|.++|++ +. ++|+|++++.- ....++.. .+..+++.|+||. +|++| +|+++.++
T Consensus 144 ~l~np~NPTG~~~~~~~l~~l~~~-~~-~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~-~~l~GlRiG~~~~~~ 220 (349)
T PRK07908 144 VIGNPTNPTSVLHPAEQLLALRRP-GR-ILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKT-WSLAGLRVGYALGAP 220 (349)
T ss_pred EEcCCCCCCCCCcCHHHHHHHHhc-CC-EEEEECcchhhccCCccccccccCCCEEEEeecccc-cCCccceeeeeecCH
Confidence 999999999999999999999975 78 68899998531 11222211 1223566699995 66666 69999888
Q ss_pred CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH-HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 269 SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT-FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
++++. + ...... ...+...+.++...++ .... .++.++++++++++++.+.|.++ ++++.
T Consensus 221 ~~~~~-~-~~~~~~-------------~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~r~~l~~~L~~~-~~~~~ 281 (349)
T PRK07908 221 DVLAR-L-TRGRAH-------------WPVGTLQLEAIAACCAPRAVA---EAAADAARLAADRAEMVAGLRAV-GARVV 281 (349)
T ss_pred HHHHH-H-HhcCCC-------------CCccHHHHHHHHHHhcccchH---HHHHHHHHHHHHHHHHHHHHHhC-CcEec
Confidence 77765 2 111000 0111112222222211 0001 25567788889999999999887 77766
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
.|+. ++++|+.++ +...+.+.|.+ +||.+..+..+.. ..++++|||++ +.+
T Consensus 282 ~p~~--g~~~~~~~~---------~~~~~~~~l~~-~gI~v~~g~~f~~--------------~~~~~vRis~~---~~~ 332 (349)
T PRK07908 282 DPAA--APFVLVRVP---------DAELLRKRLRE-RGIAVRRGDTFPG--------------LDPDYLRLAVR---PRA 332 (349)
T ss_pred cCCC--ceEEEEECC---------cHHHHHHHHHh-CCEEEEECCCCCC--------------CCCCeEEEEeC---CCc
Confidence 6554 889999886 24578888865 5999987654421 23579999996 789
Q ss_pred HHHHHHHHHHHHHhcc
Q 012991 428 DYEKFRDAVILLVEEG 443 (452)
Q Consensus 428 di~~l~~~l~~~~~~~ 443 (452)
|+++++++|++++..+
T Consensus 333 ~~~~l~~al~~~~~~~ 348 (349)
T PRK07908 333 EVPVLVQALAEILKAG 348 (349)
T ss_pred cHHHHHHHHHHHHhcc
Confidence 9999999999987654
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=226.52 Aligned_cols=327 Identities=14% Similarity=0.065 Sum_probs=219.1
Q ss_pred eEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC--CCCCCcEEEecChhHHHHHHHH
Q 012991 40 VARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN--ADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 40 ~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
++.|+.+.+.. .++.+.+++.+..... ..|....+..++++.++++++ ...+++|++|+|+++++.+++.
T Consensus 87 ~i~L~~g~p~~~~~p~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~ 159 (431)
T PRK15481 87 LHDLAGGNPDPQRLPDLSRYFARLSRTP-------RLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLC 159 (431)
T ss_pred hhhhhcCCCChhHhHHHHHHHHHhhhhh-------hhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHH
Confidence 34555444432 2233555555433211 123334456778888998876 3224699999999999999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
++ +++||.|++++|.|......+ +..|++++.+++ ++++..++.++++++ .+++++++
T Consensus 160 ~l--------~~pgd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~----~~~g~~~~~l~~~~~------~~~k~i~~ 217 (431)
T PRK15481 160 AH--------LLPGDSVAVEDPCFLSSINML----RYAGFSASPVSV----DAEGMQPEKLERALA------QGARAVIL 217 (431)
T ss_pred Hh--------CCCCCEEEEeCCCcHHHHHHH----HHcCCeEEeecc----CCCCCCHHHHHHHHh------cCCCEEEE
Confidence 87 589999999999998876555 446999999954 333322889999883 46788777
Q ss_pred e-ccCCCCcccccHH---HHHHHHHHc-CCCEEEEecccccCCc----c-ccccccCccEEEEcCcccCcCCCC--cEEE
Q 012991 197 D-HITSMPCVVIPVR---KLVKICRDE-GVDQVFVDAAHAMGSI----K-IDVKEIGADFYVSNLHKWFFCPPS--VAFL 264 (452)
Q Consensus 197 ~-~~~n~tG~~~~l~---~i~~l~~~~-~~~~~ivD~a~~~g~~----~-~~~~~~~~d~~~~s~~K~l~g~~G--~G~l 264 (452)
+ +++||||.+++.+ +|.++|+++ ++ ++|+|++++.... + +.. ...-.+++.|+||. +| +| +|++
T Consensus 218 ~p~p~NPTG~~~s~~~~~~l~~la~~~~~~-~ii~De~Y~~~~~~~~~~~~~~-~~~~vi~~~SfSK~-~~-~GlRiG~~ 293 (431)
T PRK15481 218 TPRAHNPTGCSLSARRAAALRNLLARYPQV-LVIIDDHFALLSSSPYHSVIPQ-TTQRWALIRSVSKA-LG-PDLRLAFV 293 (431)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCc-eEEecCchhhhccCCCCCCCcC-CCCCEEEEeeeccc-cC-CCceeEEE
Confidence 6 9999999999976 889999999 99 7999998763211 1 111 11234788899996 55 56 8888
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF--EGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
+.+++++.. + ..... . .....+...+ .++..++... ..-++.+++.+++.++.+.+.|.+.
T Consensus 294 i~~~~~~~~-~-~~~~~----------~-~~~~~s~~~q---~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~- 356 (431)
T PRK15481 294 ASDSATSAR-L-RLRLN----------S-GTQWVSHLLQ---DLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY- 356 (431)
T ss_pred eCCHHHHHH-H-HHHHh----------c-cccCCCHHHH---HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 888777664 2 11100 0 0011222233 3333333321 0014567788888899999999886
Q ss_pred CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 343 GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
++.+..|.+ ++++|+.+++ +..++.+.|.+ +||.+.++..+... ...+++|||++.
T Consensus 357 ~~~~~~p~g--g~f~~~~l~~--------~~~~~~~~l~~-~gV~v~pg~~f~~~-------------~~~~~iRis~~~ 412 (431)
T PRK15481 357 GIAIPSPGD--GLNLWLPLDT--------DSQATALTLAK-SGWLVREGEAFGVS-------------APSHGLRITLST 412 (431)
T ss_pred CCccccCCC--eEEEEEECCC--------CHHHHHHHHHH-CCcEEecCCccccC-------------CCCCeEEEEcCC
Confidence 666545554 8899998861 35678888865 59999876654211 224689999986
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q 012991 423 YNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~~ 441 (452)
. +.++++.+++.|++++.
T Consensus 413 ~-~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 413 L-NDAEINRLAADLHQALN 430 (431)
T ss_pred C-ChHHHHHHHHHHHHHhc
Confidence 3 58899999999998764
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=219.13 Aligned_cols=341 Identities=13% Similarity=0.106 Sum_probs=229.1
Q ss_pred CCeE-EeccCCCCC-CcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 38 HGVA-RINNGSFGS-CPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 38 ~~~~-~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
+.++ +.+++..+. ..++|.+++.+.+..+....+.. ......+..+++++++++++|.+ ..++.++|++|+..+
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~---~~~~~~SG~~An~~a 121 (406)
T PRK13393 45 REVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKE---AALLFTSGYVSNWAA 121 (406)
T ss_pred ccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCC---cEEEeCCcHHHHHHH
Confidence 3444 445555664 56779999999988764322221 11223456799999999999973 556666667799999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
+.++++ ..+++.|+++...|.++..++.. .|.+++.+ +..+ .+.+++.++... .+++++|
T Consensus 122 i~~l~~------~~~g~~I~~~~~~H~s~~~~~~~----~g~~~~~~----~~~d----~~~l~~~l~~~~--~~~~~~v 181 (406)
T PRK13393 122 LSTLGS------RLPGCVILSDELNHASMIEGIRH----SRAEKRIF----RHND----PADLERKLSDLD--PHRPKLV 181 (406)
T ss_pred HHHhhc------CCCCCEEEEccchhHHHHHHHHH----cCCeEEEe----CCCC----HHHHHHHHHhcc--CCCCEEE
Confidence 887742 23678888888899988877743 47777777 3333 355555554220 2468899
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-c-----ccc--ccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK-I-----DVK--EIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-~-----~~~--~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
++++++|++|.+.|+++|.++|+++|+ ++++|++|+.|... . ... ...+|+++.+++|. +|..| |+++.
T Consensus 182 ~~~~v~~~~G~~~~l~~i~~l~~~~~~-~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa-~g~~G-G~~~~ 258 (406)
T PRK13393 182 AFESVYSMDGDIAPIAEICDVAEKHGA-MTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKA-FGVMG-GYITG 258 (406)
T ss_pred EEcCCCCCCCchhCHHHHHHHHHHcCC-EEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchh-hcccC-ceeeC
Confidence 999999999999999999999999999 89999999866531 1 101 11357888899997 56666 78777
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
++++++. + .... . ...+.++.+.....+..++++.+.+. + ..+++.+++.+++.+.|.++ ++.+
T Consensus 259 ~~~~~~~-l-~~~~-----~----~~~~t~~~~p~~~aa~~aaL~~~~~~--~--~~~~~~~~~~~~l~~~L~~~-g~~~ 322 (406)
T PRK13393 259 SAALCDF-I-RSFA-----S----GFIFTTSLPPAVAAGALASVRHLKAS--S--AERERHQDRVARLRARLDKA-GIPH 322 (406)
T ss_pred CHHHHHH-H-HHhC-----c----CceecCccCHHHHHHHHHHHHHHhhC--H--HHHHHHHHHHHHHHHHHHHc-CCCc
Confidence 7766554 1 1110 0 00012333434455666777776642 2 22456778899999999876 6665
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
..+. ++++.+.+. +..++.++.+.|.+++||.++....+.. ....+.+|++++.++|.
T Consensus 323 ~~~~---~~i~~v~~~------~~~~~~~l~~~L~~~~Gi~v~~~~~p~~-------------p~g~~~iRis~~~~~t~ 380 (406)
T PRK13393 323 LPNP---SHIVPVMVG------DPVLCKQISDELLDRYGIYVQPINYPTV-------------PRGTERLRITPSPLHTD 380 (406)
T ss_pred CCCC---CCeEEEEeC------CHHHHHHHHHHHHHhCCEEEEeECCCCC-------------CCCCceEEEEECCCCCH
Confidence 5332 456555443 2235678888887656999976433311 12236899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+|+++++++|+++++.
T Consensus 381 edid~l~~~l~~~~~~ 396 (406)
T PRK13393 381 ADIEHLVQALSEIWAR 396 (406)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=222.31 Aligned_cols=333 Identities=14% Similarity=0.138 Sum_probs=216.4
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHh
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI 118 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l 118 (452)
.++.|..+.+..+++.+.+++.+.. .....+.+ .+...++++.++++++.+ .++++++||+++.+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~~~~--~~~~~~l~~~la~~~~~~---~~~~~~~Gs~a~~~~l~~~ 75 (353)
T PLN02721 6 RVVDLRSDTVTKPTDAMRAAMANAE-----VDDDVLGY--DPTALRLEEEMAKIFGKE---AALFVPSGTMGNLISVLVH 75 (353)
T ss_pred hhhhhhcccccCCCHHHHHHHHhcc-----CCCcccCC--CHHHHHHHHHHHHHhCCc---eeEEecCccHHHHHHHHHH
Confidence 3556666666666677888876531 01111112 233688999999999985 4677778888877777665
Q ss_pred hcccccCCCC-CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC-CCceEEEE
Q 012991 119 GRGFTEGRFH-RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD-GKMIRLAI 195 (452)
Q Consensus 119 ~~~~~~~~~~-~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~-~~~~~lv~ 195 (452)
.. +||+|++++++|.+.+.... ++...|.+++.++ .++++.+ ++++++.+++.... .+++++|+
T Consensus 76 --------~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~----~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 142 (353)
T PLN02721 76 --------CDVRGSEVILGDNSHIHLYENGG-ISTLGGVHPRTVK----NNEDGTMDLDAIEAAIRPKGDDHFPTTRLIC 142 (353)
T ss_pred --------ccCCCCeEEEcCccceehhcccc-hhhhcCceeEecC----CCcCCCcCHHHHHHHHHhccCCCCCcceEEE
Confidence 34 89999999999976654211 2456799999884 3334444 89999988532110 15789999
Q ss_pred Eecc-CCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccc--ccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 196 IDHI-TSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVK--EIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 196 ~~~~-~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~--~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
++++ +||+|..+| +++|.++|+++|+ ++|+|+++..+.. ..+.. ..++|+++.|+|||++++.| ++++.
T Consensus 143 l~~~~~np~G~~~~~~~l~~l~~l~~~~g~-~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~ 220 (353)
T PLN02721 143 LENTHANCGGRCLSVEYTDKVGELAKRHGL-KLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVG-SVIVG 220 (353)
T ss_pred EeccccccCCccccHHHHHHHHHHHHHcCC-EEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCcee-eEEec
Confidence 9775 667899887 6799999999999 7999999865431 11211 22678999999999776654 45666
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
+++++.. + ... ...++ +.+......+. .++..+.. -.+.+ ++..++++++.+.|.+++++.+
T Consensus 221 ~~~~~~~-~-~~~-~~~~~----------~~~~~~~~~~~-~~~~~l~~---~~~~~-~~~~~~~~~l~~~L~~~~~~~~ 282 (353)
T PLN02721 221 SKSFIRK-A-KRL-RKTLG----------GGMRQVGVLAA-AALVALQE---NVPKL-EDDHKKAKLLAEGLNQIKGLRV 282 (353)
T ss_pred CHHHHHh-H-HHH-HHhcC----------CCeehhHHHHH-HHHHHHHH---HHHHH-HHHHHHHHHHHHHHHhCCCcEE
Confidence 7766654 1 111 00011 11111111111 12222222 12223 3345678889999988877744
Q ss_pred -CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 347 -GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 347 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
..++. ++++++.++.. ...+...+++.|.+ .||.+.+. ..+++|++++.+++
T Consensus 283 ~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~L~~-~gi~v~~~--------------------~~~~lR~~~~~~~~ 335 (353)
T PLN02721 283 NVAAVE--TNIVYFDITDG----SRITAEKLCKSLEE-HGVLLMPG--------------------NSSRIRVVTHHQIS 335 (353)
T ss_pred ecCCcc--ceEEEEEccCC----ccccHHHHHHHHHh-CCcEEecC--------------------CCceEEEEecCcCC
Confidence 33332 56888888621 11467789999975 59998632 23689999998899
Q ss_pred HHHHHHHHHHHHHHHh
Q 012991 426 LEDYEKFRDAVILLVE 441 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~ 441 (452)
++|+++++++|++++.
T Consensus 336 ~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 336 DSDVQYTLSCFQQAAL 351 (353)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=222.78 Aligned_cols=337 Identities=12% Similarity=0.058 Sum_probs=225.5
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC----CC-CCCcEEEecChhHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----AD-DVGEISLVDNATTA 110 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~~~i~~t~g~t~a 110 (452)
+.+.+.|..+.+. ..+..+.+++.+.... . ....|....+..++|++++++++ .. ++++|++|+|+++|
T Consensus 28 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 102 (386)
T PRK07550 28 DGPLIDLSQAVPGYPPPPELLRALAEAAAD----P-AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQA 102 (386)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----c-CCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHH
Confidence 4568889888766 3466677777765531 1 11123333445666666666653 21 36899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ .++||+|++++|.|......+ +..|.+++.+++.. ++...+ .+++++.+ ..
T Consensus 103 l~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~~~~~~l~~~~------~~ 162 (386)
T PRK07550 103 FWAAMVTL--------AGAGDEVILPLPWYFNHKMWL----DMLGIRPVYLPCDE--GPGLLPDPAAAEALI------TP 162 (386)
T ss_pred HHHHHHHh--------cCCCCEEEEcCCCCcchHHHH----HhcCCEEEEEecCC--CcCCCCCHHHHHHHh------cc
Confidence 99999876 489999999999998765544 45699999996531 112223 78899888 45
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccccc---cc-CccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVK---EI-GADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~---~~-~~d~~~~s~~K~l~g~ 258 (452)
++++|++++|+||||..+| +++|.++|+++|+ ++|+|++++.... +.... .. .-.+++.|++|. +|.
T Consensus 163 ~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~-~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~ 240 (386)
T PRK07550 163 RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGI-ALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKS-YAL 240 (386)
T ss_pred cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCe-EEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhh-ccC
Confidence 7889999999999999987 6688999999999 7999998753211 11111 11 124678899996 554
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|+++++++++.. + ..... .....++...+.++..+++...+ -.+..+++++++++.+.+
T Consensus 241 ~G~RiG~i~~~~~~~~~-~-~~~~~-----------~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~ 304 (386)
T PRK07550 241 TGHRVGAVVASPARIAE-I-EKFMD-----------TVAICAPRIGQIAVAWGLPNLAD---WRAGNRAEIARRRDAFRA 304 (386)
T ss_pred cccceEeeecCHHHHHH-H-HHHHh-----------hcccCCCcHHHHHHHHHhccHHH---HHHHHHHHHHHHHHHHHH
Confidence 44 8999888776654 1 11100 00122333344444444443333 245667777888888999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|....++.+. +.. +.++|+.++. .+.++.++++.|.+++||.+.++..+.. ...+++
T Consensus 305 ~L~~~~~~~~~-~~g--~~~~~~~~~~-----~~~~~~~l~~~l~~~~gv~v~pg~~f~~--------------~~~~~i 362 (386)
T PRK07550 305 VFARLPGWELL-ASG--AYFAYVRHPF-----PDRPSREVARRLAKEAGILCLPGTMFGP--------------GQEGYL 362 (386)
T ss_pred HHHhCCCceeC-CCc--eEEEEecCCC-----CCCCHHHHHHHHHHhcCEEEeCchhhCC--------------CCCCEE
Confidence 98876455433 222 6788888762 1456788999876667999987655421 224699
Q ss_pred EecccccCCHHHHHHHHHHHHHH
Q 012991 417 RISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~ 439 (452)
|++++. .+++++++.++.|+++
T Consensus 363 Ris~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 363 RLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred EEEeec-CCHHHHHHHHHHHHhh
Confidence 999975 3688999999999875
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=227.92 Aligned_cols=351 Identities=15% Similarity=0.150 Sum_probs=222.2
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHH-------HhcCCchhhhhhhhHHHHHHHHHHHhHhC--------CCCCCcEEE
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLK-------FLQQPDDFYFNSLRKGILESRAAVKDLIN--------ADDVGEISL 103 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~i~~ 103 (452)
++|.|+.+.....-..+.+.+.+.... ....+.. ..+....+..++|+++|++++ + ++++|++
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v-~pe~Ivi 124 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDI-ANFQDYHGLKKFRQAIAHFMGKARGGKVTF-DPERVVM 124 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchh-hccCCCCCcHHHHHHHHHHHHHHhCCCCcC-ChhhEEE
Confidence 688888766544333344444443221 0011111 123334566778888888775 4 3789999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|+++|+.+++.++ .++||.|++++|.|+.+...+. .+.|++++.+++.. ++...+ ++.++++++
T Consensus 125 t~Ga~~al~~l~~~l--------~~pGD~Vlv~~P~Y~~~~~~~~---~~~G~~vv~v~~~~--~~~~~~~~~~le~a~~ 191 (496)
T PLN02376 125 SGGATGANETIMFCL--------ADPGDVFLIPSPYYAAFDRDLR---WRTGVEIIPVPCSS--SDNFKLTVDAADWAYK 191 (496)
T ss_pred ccchHHHHHHHHHHh--------CCCCCEEEECCCCccchHHHHH---hhCCCEEEEEeCCC--CccCcCCHHHHHHHHH
Confidence 999999999999987 5899999999999998765543 24699999996531 222334 777776654
Q ss_pred ccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----ccc---c----c--ccCcc-
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KID---V----K--EIGAD- 245 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~---~----~--~~~~d- 245 (452)
+....+.++++|++++|+||||.+++. ++|+++|+++++ ++|+|++++.... ... + . ..+.+
T Consensus 192 ~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i-~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~ 270 (496)
T PLN02376 192 KAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNI-HLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDL 270 (496)
T ss_pred HHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC-EEEEEcCccccccCCCCcccHHHhhccccccccCCCe
Confidence 322224689999999999999999985 467888999999 7999999874221 111 1 0 00122
Q ss_pred -EEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH---HHHHhhcC
Q 012991 246 -FYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT---FVSRFEGG 319 (452)
Q Consensus 246 -~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~~g 319 (452)
+++.|++|. +|.+| +|+++..++.+.. ..... .. .+..+...+.++...++ +..+ -
T Consensus 271 v~vv~S~SK~-~glpGlRvG~li~~~~~l~~-~~~~~-----------~~--~~~vs~~~Q~a~~~~L~d~~~~~~---~ 332 (496)
T PLN02376 271 IHIVYSLSKD-MGLPGFRVGIVYSFNDSVVS-CARKM-----------SS--FGLVSSQTQLMLASMLSDDQFVDN---F 332 (496)
T ss_pred EEEEEecccc-CCCCcceEEEEEECCHHHHH-HHHHH-----------hh--cCCCCHHHHHHHHHHhCChhHHHH---H
Confidence 356799996 66666 8998885444432 00000 00 01222223333333332 1111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCcccc-CChhhHHHHHHHHhhhcceEeeecccCCCCC
Q 012991 320 IDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRV-MGEDDALRLRGHLRVRFGVEVPIHYQAPKDD 398 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~ 398 (452)
+...++++.+..+.+.+.|.+. ++.+..+.+ +.++|+.++..... ....+..++.+.|.++.||.+.++..+..
T Consensus 333 l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~a--G~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~-- 407 (496)
T PLN02376 333 LMESSRRLGIRHKVFTTGIKKA-DIACLTSNA--GLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRC-- 407 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCcccCCCc--eEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCC--
Confidence 3445666777788888888875 666655543 78999998632111 01113357888777667999987765521
Q ss_pred CCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 399 GQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 399 ~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
..++++|||++. .+.+.++..+++|++++.
T Consensus 408 ------------~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~ 437 (496)
T PLN02376 408 ------------TEPGWFRICFAN-MDDDTLHVALGRIQDFVS 437 (496)
T ss_pred ------------CCCCEEEEEeeC-CCHHHHHHHHHHHHHHHH
Confidence 236799999985 256889999999999885
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=219.14 Aligned_cols=343 Identities=17% Similarity=0.141 Sum_probs=221.9
Q ss_pred CCCCeEEeccCCCC----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh------CCCCCCcEEEec
Q 012991 36 HQHGVARINNGSFG----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI------NADDVGEISLVD 105 (452)
Q Consensus 36 ~~~~~~~l~~~~~~----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i~~t~ 105 (452)
.+++++.|+.|.+. +.|+.+.+++.+..... ..|....+..++|+++++++ +++ +++|++|+
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~-~~~i~~t~ 102 (404)
T PRK09265 31 EGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTA-------QGYSDSKGLFSARKAIMQYYQQKGIPDVD-VDDIYIGN 102 (404)
T ss_pred cCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcC-------CCCCCCCCcHHHHHHHHHHHhccCCCCCC-cccEEEeC
Confidence 56789999987663 36677877777654321 12333455678999999988 564 78999999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKG 184 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~ 184 (452)
|+++++.+++.++ +++||+|++++|+|......+ ...|.+++.++.+ .+....+ .+++++.+
T Consensus 103 G~~~~l~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~v~~~~~--~~~~~~~d~~~l~~~~--- 165 (404)
T PRK09265 103 GVSELIVMAMQAL--------LNNGDEVLVPAPDYPLWTAAV----SLSGGKPVHYLCD--EEAGWFPDLDDIRSKI--- 165 (404)
T ss_pred ChHHHHHHHHHHh--------CCCCCEEEEeCCCCcChHHHH----HHcCCEEEEEecc--cccCCCCCHHHHHHhc---
Confidence 9999999999876 589999999999998765544 4458888877542 1112234 78888888
Q ss_pred ccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC----cccccccc--C-ccEEEEcCccc
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKEI--G-ADFYVSNLHKW 254 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~~--~-~d~~~~s~~K~ 254 (452)
.+++++|++++|+||||.+++ +++|+++|+++|+ ++|+|++++.-. ....+... + .-+++.|++|.
T Consensus 166 ---~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 241 (404)
T PRK09265 166 ---TPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNL-IIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKA 241 (404)
T ss_pred ---cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCC-EEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhh
Confidence 567999999999999999999 7788999999999 799999875321 11111111 1 23566799996
Q ss_pred CcCCCC--cEEEEEe--cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH---HHHH
Q 012991 255 FFCPPS--VAFLYCR--KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI---MQRN 327 (452)
Q Consensus 255 l~g~~G--~G~l~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~---~~~~ 327 (452)
+|.+| +|++++. +.+... +...... ... .....+...+.++..++.... ..+.+ .+++
T Consensus 242 -~~~pGlRiG~~v~~~~~~~~~~-~~~~~~~--------~~~-~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~ 306 (404)
T PRK09265 242 -YRVAGFRVGWMVLSGPKKHAKG-YIEGLDM--------LAS-MRLCANVPAQHAIQTALGGYQ----SINELILPGGRL 306 (404)
T ss_pred -ccCcccceEEEEEeCchHHHHH-HHHHHHH--------Hhc-cccCCCcHHHHHHHHHhcCch----hHHHHHHHHHHH
Confidence 66666 7888863 221111 0000000 000 001223333444443432111 11222 2355
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
.+.++.+.+.|.+.+++.+..|.. +.++|+.++.... ....+...+.+.|.+ +||.+.++..+..
T Consensus 307 ~~~r~~~~~~L~~~~~~~~~~p~~--g~~l~~~~~~~~~-~~~~~~~~~~~~l~~-~gv~v~pg~~F~~----------- 371 (404)
T PRK09265 307 YEQRDRAWELLNAIPGVSCVKPKG--ALYAFPKLDPKVY-PIHDDEQFVLDLLLQ-EKVLLVQGTGFNW----------- 371 (404)
T ss_pred HHHHHHHHHHHhcCCCCcccCCCc--ceEEEEEeccccc-CCCCHHHHHHHHHHh-CCEEEECchhhCC-----------
Confidence 667788888887766766655544 7788888863100 001133456666655 6999977655421
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+++. .+.++++..+++|+++++.
T Consensus 372 ---~~~~~~Ri~~~--~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 372 ---PEPDHFRIVTL--PRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred ---CCCCeEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 23579999996 4789999999999998864
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=205.09 Aligned_cols=343 Identities=13% Similarity=0.137 Sum_probs=251.9
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHHHHHHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-DVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a~~~~~ 115 (452)
++++-+-.+.-. +.|++|.+++.+..+. +...|++...+.+..+..+.++.++-. +++.+++++|.-.++..++
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~~rvdh----GvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I 100 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALRERVDH----GVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAI 100 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHHHHHhc----CCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHH
Confidence 456655544444 5777799999988754 334455666678888999999887743 3688999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
+++ .++||.|++..|.|+.++..+.. .|.++...|+..+ +....+ .++||+.+. .++++++
T Consensus 101 ~~~--------T~~gd~Vvi~tPvY~PF~~~i~~----n~R~~i~~pL~~~-~~~y~iD~~~LE~~~~-----~~~vkl~ 162 (388)
T COG1168 101 RAL--------TKPGDGVVIQTPVYPPFYNAIKL----NGRKVIENPLVED-DGRYEIDFDALEKAFV-----DERVKLF 162 (388)
T ss_pred HHh--------CcCCCeeEecCCCchHHHHHHhh----cCcEEEecccccc-CCcEEecHHHHHHHHh-----cCCccEE
Confidence 987 59999999999999998877744 5889998876431 223334 999999997 4678999
Q ss_pred EEeccCCCCccccc---HHHHHHHHHHcCCCEEEEeccccc----CCcccccccc-----CccEEEEcCcccCcCCCC--
Q 012991 195 IIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAM----GSIKIDVKEI-----GADFYVSNLHKWFFCPPS-- 260 (452)
Q Consensus 195 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~----g~~~~~~~~~-----~~d~~~~s~~K~l~g~~G-- 260 (452)
++|+|+||+|.+.. +.+|++||++||+ +||.|+.|+- |.....+... +.-+.+.|.+|+ +...|
T Consensus 163 iLCnPHNP~Grvwt~eeL~~i~elc~kh~v-~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKt-FNlaGL~ 240 (388)
T COG1168 163 ILCNPHNPTGRVWTKEELRKIAELCLRHGV-RVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKT-FNLAGLK 240 (388)
T ss_pred EEeCCCCCCCccccHHHHHHHHHHHHHcCC-EEEeecccccccccCCCccchhhcChhhhcceEEEeecccc-ccchhhh
Confidence 99999999999986 6678999999999 8999999874 3222222211 233566788997 66666
Q ss_pred cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 261 ~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
++.++.. +++..+ +... ......+.++..++.+..+|.+.-..+ ++++.+.++.+++++.+.|.
T Consensus 241 ~a~~Ii~n~~lr~~-~~~~-----------l~~~~~~~~n~lg~~A~~aAY~~G~~W---Ld~L~~yl~~N~~~~~~~l~ 305 (388)
T COG1168 241 CAYIIISNRELRAK-FLKR-----------LKRNGLHGPSALGIIATEAAYNQGEPW---LDELLEYLKDNRDYVADFLN 305 (388)
T ss_pred heeEEecCHHHHHH-HHHH-----------HHHhcCCCCchHHHHHHHHHHHhchHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4555554 444343 1111 111123567777777777777666655 77889999999999999997
Q ss_pred H-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 340 N-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 340 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
+ +|++++..|++ ...+|+.... -+.+..++.+.|+++.+|.+..|+.++. ...|++|+
T Consensus 306 ~~~P~v~v~~p~g--TYL~WLD~r~-----l~l~d~~l~~~ll~~akVal~~G~~FG~--------------~g~gf~Rl 364 (388)
T COG1168 306 KHLPGVKVTEPQG--TYLAWLDCRE-----LGLDDSELAEFLLEEAKVALSPGSTFGE--------------EGSGFVRL 364 (388)
T ss_pred hhCCCcEEecCCC--ceeeeeeccc-----cCCChHHHHHHHHHhhcEeccCCCccCc--------------CCCceEEE
Confidence 6 46889988887 4555555431 2456678999999888999988888754 33689999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++. +++-++..++.|++.++.
T Consensus 365 N~ac--pr~~L~eal~ri~~al~~ 386 (388)
T COG1168 365 NFAC--PRAILEEALERLKRALKK 386 (388)
T ss_pred ecCC--CHHHHHHHHHHHHHHHhc
Confidence 9985 777788888888877653
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-25 Score=210.88 Aligned_cols=338 Identities=15% Similarity=0.183 Sum_probs=243.4
Q ss_pred CCCeEEeccCCCC--CCcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSFG--SCPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
++.+++|..+.+- ...+.+.+++.+.+..+... +++..-.+..+...++++.+|+++|.+ +.++|++|- .|+..
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e--~al~f~SGy-~AN~~ 114 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAE--AALLFSSGF-VANLG 114 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC--cEEEEcccc-hhHHH
Confidence 4667777655543 33344888888888775322 222233667788899999999999995 556665555 57888
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ .+++|.|+.+...|.|+..+++. .+++++.+ ..++ ++.||+.+++.+....+.++
T Consensus 115 ~i~~l--------~~~~dli~~D~lnHASiidG~rl----s~a~~~~f----~HnD----~~~Le~~l~~~~~~~~~~~~ 174 (388)
T COG0156 115 LLSAL--------LKKGDLIFSDELNHASIIDGIRL----SRAEVRRF----KHND----LDHLEALLEEARENGARRKL 174 (388)
T ss_pred HHHHh--------cCCCcEEEEechhhhhHHHHHHh----CCCcEEEe----cCCC----HHHHHHHHHhhhccCCCceE
Confidence 88877 47799999999999998888753 58888888 5554 68888888763311225789
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---------cccccCccEEEEcCcccCcCCCCcEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
|+++...++.|.+.|+++|.+++++|++ +++||++|+.|.+.- .+..-.+|+++.+++|. +|..| |++
T Consensus 175 IvtegVfSMdGdiApL~~l~~L~~ky~a-~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKA-lGs~G-g~v 251 (388)
T COG0156 175 IVTEGVFSMDGDIAPLPELVELAEKYGA-LLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKA-LGSSG-GYI 251 (388)
T ss_pred EEEeccccCCCCcCCHHHHHHHHHHhCc-EEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhh-hcccC-cee
Confidence 9999999999999999999999999999 799999999987642 22223458999999997 56665 788
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
.++..+++. ++..- ..+.+..+.+.....+..++++.+.+ ....+++++++..+++..+... ++
T Consensus 252 ~g~~~~~d~-L~~~a----------r~~ifStalpP~~aaa~~~al~~l~~----~~~~r~~L~~~~~~~~~~~~~~-~~ 315 (388)
T COG0156 252 AGSAALIDY-LRNRA----------RPFIFSTALPPAVAAAALAALRILEE----GPERRERLQELAAFFRSLLKAL-GL 315 (388)
T ss_pred eCcHHHHHH-HHHhC----------CceeccCCCCHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 888777775 21110 01111233333344456667787774 3567888899999998666554 55
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+.... ++++.+.+. +...+.++.+.|.++ ||++....+|.. ......+|+++...+
T Consensus 316 ~~~~s~---s~I~pv~~g------d~~~a~~~s~~l~~~-Gi~v~~i~~PTV-------------p~gtarlRi~lta~h 372 (388)
T COG0156 316 VLLPSE---SPIIPVILG------DEERALEASRALLEE-GIYVSAIRPPTV-------------PKGTARLRITLTAAH 372 (388)
T ss_pred ccCCCC---CCeeeeEeC------CHHHHHHHHHHHHHC-CeeEeeecCCCC-------------CCCcceEEEEecCCC
Confidence 542222 456666654 345678899999887 999976665533 234578999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 012991 425 TLEDYEKFRDAVILL 439 (452)
Q Consensus 425 t~~di~~l~~~l~~~ 439 (452)
|++||+++++++.++
T Consensus 373 t~~~I~~l~~~l~~~ 387 (388)
T COG0156 373 TEEDIDRLAEALSEV 387 (388)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=218.06 Aligned_cols=337 Identities=13% Similarity=0.144 Sum_probs=220.3
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhh--hhhhHHHHHHHHHHHhHhCCC-CC-CcEEEecChhHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYF--NSLRKGILESRAAVKDLINAD-DV-GEISLVDNATTAA 111 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~-~~-~~i~~t~g~t~a~ 111 (452)
+.+++.|+.+.+. +.++.+.+++.+.... +...|. .+..++.+.+.+.+++++|++ ++ +++++|+|+++++
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al 103 (384)
T PRK12414 28 QHDALNLSQGAPNFAPDPALVEGVARAMRD----GHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGL 103 (384)
T ss_pred hCCeEEcCCCCCCCCCCHHHHHHHHHHHHh----CCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHH
Confidence 4678999988766 3467788888776542 111121 223445566666666677874 22 5899999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++ +.+||+|++++|+|.+....+ +..|.+++.++++. +...+ ++.|++.+ .++
T Consensus 104 ~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~---~~~~~d~~~l~~~l------~~~ 162 (384)
T PRK12414 104 YAAISAL--------VHPGDEVIYFEPSFDSYAPIV----RLQGATPVAIKLSP---EDFRVNWDEVAAAI------TPR 162 (384)
T ss_pred HHHHHHh--------cCCCCEEEEeCCCccchHHHH----HHcCCEEEEEecCc---cccccCHHHHHhhc------Ccc
Confidence 9999876 589999999999998754443 44689999886521 12334 78899888 467
Q ss_pred eEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---cc-ccccc----CccEEEEcCcccCcCCC
Q 012991 191 IRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KI-DVKEI----GADFYVSNLHKWFFCPP 259 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~-~~~~~----~~d~~~~s~~K~l~g~~ 259 (452)
+++|++++++||||.+++ +++|.++|++|++ ++|+|+++..... +. .+... +-.+++.|++|. +|.+
T Consensus 163 ~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~-~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~-~~~p 240 (384)
T PRK12414 163 TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDI-VILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKS-YHVT 240 (384)
T ss_pred cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCe-EEEEhhhhhhccCCCCCccCcccCcCccCcEEEEeccccc-ccCc
Confidence 999999999999999976 6678888999999 7999999864221 11 11111 234788899995 6766
Q ss_pred C--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 260 S--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 260 G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
| +|+++++++++.. + ..... ......+...+.+ +..++.. ......+++.++++++.+.+.
T Consensus 241 GlRiG~~v~~~~l~~~-l-~~~~~-----------~~~~~~s~~~q~a---~~~~l~~-~~~~~~~~~~~~~~r~~l~~~ 303 (384)
T PRK12414 241 GWRVGYCLAPAELMDE-I-RKVHQ-----------FMVFSADTPMQHA---FAEALAE-PASYLGLGAFYQRKRDLLARE 303 (384)
T ss_pred cceEEEEecCHHHHHH-H-HHHHh-----------heecCCCcHHHHH---HHHHhcC-ChHHHHHHHHHHHHHHHHHHH
Confidence 6 7999988877654 1 11100 0001222223322 2333332 012345677788888999999
Q ss_pred HHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 338 LANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 338 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
|.+. ++.+..+.+ +.++|+.++.. ...+..+++..+.+++||.+.++..+... ....+++|
T Consensus 304 L~~~-g~~~~~~~g--g~~~~~~~~~~----~~~~~~~~~~~~l~~~gV~v~pg~~f~~~------------~~~~~~iR 364 (384)
T PRK12414 304 LAGS-RFELLPSEG--SFFMLARFRHF----SDESDSDFVLRLIRDARVATIPLSAFYTD------------GTDTGLIR 364 (384)
T ss_pred HHhC-CCeecCCCc--ceEEEEccccc----CCCCHHHHHHHHHHhCCEEEecchhhcCC------------CCCCCEEE
Confidence 9886 666554443 56677666421 01233455544434569999876654221 12357999
Q ss_pred ecccccCCHHHHHHHHHHHHH
Q 012991 418 ISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~ 438 (452)
|+++. ++++++..+++|.+
T Consensus 365 is~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 365 LSFSK--DDATLVEGARRLCS 383 (384)
T ss_pred EEecC--CHHHHHHHHHHHhh
Confidence 99995 67888888888764
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-25 Score=215.38 Aligned_cols=298 Identities=14% Similarity=0.076 Sum_probs=222.8
Q ss_pred hhhHHHHHHHHHHHhHhCCCCC-CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 77 SLRKGILESRAAVKDLINADDV-GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~-~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
...++..++-+++++++|.++. ...++|+|||+++..++.+. |.+ .+...|++++..|.|+.++... .|
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aA-Re~-----~~~~vvy~S~~aH~Sv~KAa~l----lg 199 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVG-REV-----FPDGILYASRESHYSVFKAARM----YR 199 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHH-Hhh-----cCCcEEEEcCCccHHHHHHHHh----cC
Confidence 5678889999999999999631 24689999999999998865 322 2345788899999999888655 49
Q ss_pred cEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCC-----CEEEEecc
Q 012991 156 GSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGV-----DQVFVDAA 229 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~-----~~~ivD~a 229 (452)
++++.+ |.++.+.+ +++|+++|++. ..+|.+|+.+.+++++|.+.|+++|+++|+++|+ | +|||+|
T Consensus 200 i~~~~V----p~d~~g~mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iw-lHVDAA 271 (470)
T PLN02263 200 MECVKV----DTLVSGEIDCADFKAKLLAN---KDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFY-IHCDGA 271 (470)
T ss_pred CcceEe----ccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCee-EEEecc
Confidence 999998 55566677 99999999753 3468899999999999999999999999999985 6 999999
Q ss_pred cccCCcc-------ccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC--CCCceeccCCCCcccccccccccCc
Q 012991 230 HAMGSIK-------IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM--HHPVVSHEFGNGLPIESAWIGTRDY 300 (452)
Q Consensus 230 ~~~g~~~-------~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (452)
++...++ +++.. .+|.++.++|||++.|.++|++++|++.+.. + ...|+.. .+....++.+.
T Consensus 272 ~GG~~lPf~~~~~~~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~-~~~~~~Yl~~-------~d~ti~gSR~g 342 (470)
T PLN02263 272 LFGLMMPFVKRAPKVTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINV-LSSNVEYLAS-------RDATIMGSRNG 342 (470)
T ss_pred chhhHhhhcccccccCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhh-hccChHhhCC-------CCCCcCCCCCc
Confidence 8765443 33332 4899999999999999999999999765532 1 1122211 01123466666
Q ss_pred cccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHH
Q 012991 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHL 380 (452)
Q Consensus 301 ~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 380 (452)
...+.++..++.+..- |+.+..++..++++++.+.|.+. ++.+...+. +.+++|.-| +... .
T Consensus 343 ~~al~lW~~L~~~G~~--G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~--s~~V~f~~p---------~~~~----~ 404 (470)
T PLN02263 343 HAPIFLWYTLNRKGYR--GFQKEVQKCLRNAHYLKDRLREA-GISAMLNEL--SSTVVFERP---------KDEE----F 404 (470)
T ss_pred HHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCC--ceEEEEecC---------chHH----h
Confidence 5556677777766653 88888999999999999999987 665443333 567777654 1111 1
Q ss_pred hhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 381 RVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 381 ~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+ |+.+.. .++.+++++....+.+.++.+++.|++....
T Consensus 405 -~~-gW~L~~---------------------~~~~~Hivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 405 -VR-RWQLAC---------------------QGNIAHVVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred -hc-ceEEcc---------------------CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 33 776631 2357999999888999999999999988764
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-25 Score=214.62 Aligned_cols=330 Identities=13% Similarity=0.108 Sum_probs=217.2
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISL 103 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~ 103 (452)
++.++.+.....+..++.|+.+... ..|+.+.+++.+.......++ .....++|+.++++++++ +++|++
T Consensus 17 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--------~~~~~~lr~~ia~~~~~~-~~~I~i 87 (357)
T PRK14809 17 GIEEVARELGLDPDDLVKLSSNENPHGPSPAAVEAIREAAERVHSYP--------KASHADLTAALADRWDVS-PEQVWL 87 (357)
T ss_pred CHHHHHHHhCCCccceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCC--------CCCHHHHHHHHHHHhCCC-cceEEE
Confidence 3545555543334578999887554 455668888877654322222 123678999999999996 899999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|+++++.+++.++ +++||+|++++|.|...... +...|.+++.++++. ++...+ .+.+++..
T Consensus 88 t~G~~~al~~~~~~~--------~~~gd~V~v~~P~y~~~~~~----~~~~g~~~~~~~l~~--~~~~~~~~~~~~~~~- 152 (357)
T PRK14809 88 ANGGDGALDYLARAM--------LDPGDTVLVPDPGFAYYGMS----ARYHHGEVREYPVSK--ADDFEQTADTVLDAY- 152 (357)
T ss_pred CCCHHHHHHHHHHHh--------cCCCCEEEEeCCChHHHHHH----HHHcCCeEEEEeccc--CcCCCcCHHHHHHhh-
Confidence 999999999999876 58999999999998754333 345688898886631 222222 55555544
Q ss_pred ccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCcc---cc-ccccCccEEEEcCcccCc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSIK---ID-VKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~~---~~-~~~~~~d~~~~s~~K~l~ 256 (452)
.++++|++++++||||.++|.+++.++++.. ++ ++|+|+++..-... .. ....+-.+++.|++|. +
T Consensus 153 ------~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~-~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~-~ 224 (357)
T PRK14809 153 ------DGERIVYLTSPHNPTGSEIPLDEVEALAERTDEET-LVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKA-Y 224 (357)
T ss_pred ------cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCc-EEEEechhhhccCCchhHHHHhhCCCEEEEecchhH-h
Confidence 3578999999999999999988887777654 78 79999998642211 11 1111234677899996 6
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|.+| +|++++++++++. + ..... ....+ ..+..+++..+.. .+-++..++.+++.++.+
T Consensus 225 ~~~GlRiG~~~~~~~~~~~-~-~~~~~-------------~~~~~---~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l 285 (357)
T PRK14809 225 GLAGLRLGYAVVPEEWADA-Y-ARVNT-------------PFAAS---ELACRAGLAALDD-DEHVERTVETARWAREYI 285 (357)
T ss_pred cCcchhheeeecCHHHHHH-H-HHhCC-------------CCCCC---HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHH
Confidence 6666 8999988877765 2 11100 01111 1222333333321 012444555566666666
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|... . .+++ +.++|+.++ +..++.+.|.+ .||.+..+..+ ..++
T Consensus 286 ~~~L~~~----~-~~~~--g~f~~~~~~---------~~~~~~~~l~~-~gv~v~~g~~f----------------~~~~ 332 (357)
T PRK14809 286 REELDAP----T-WESA--GNFVLAEVG---------DASAVAEAAQE-RGVIVRDCTSF----------------GLPE 332 (357)
T ss_pred HHHhcCc----c-CCCC--CCEEEEECC---------CHHHHHHHHHH-CCEEEEECccC----------------CCCC
Confidence 6666431 1 1333 678888764 35678888865 59999876554 1247
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++|+++. +.++++.++++|+++++
T Consensus 333 ~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 333 CIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred eEEEecC---CHHHHHHHHHHHHHHhc
Confidence 9999986 57899999999998764
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-25 Score=213.98 Aligned_cols=333 Identities=15% Similarity=0.167 Sum_probs=221.9
Q ss_pred HHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLV 104 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t 104 (452)
+..+.+++....+.++.|+.+... ..|+.+.+++.+.+..... |. .....++|++++++++++ +++|++|
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~-------Y~-~~~~~~lr~~ia~~~~~~-~~~i~it 77 (354)
T PRK06358 7 INEIAREKGLTKNMILDFSANINPLGVPESLKQAITENLDKLVE-------YP-DPDYLELRKRIASFEQLD-LENVILG 77 (354)
T ss_pred HHHHHHHhCCCccceEEecCCCCCCCCCHHHHHHHHHHHHhhhc-------CC-CccHHHHHHHHHHHhCCC-hhhEEEC
Confidence 444555555444557888776543 4577788888876543321 21 223678999999999996 8999999
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhcc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKG 184 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~ 184 (452)
+|+++++..++.++ .+ +.|++++|.|+.....+ ...|.+++.++++. ++...+-+++.+.+
T Consensus 78 ~Ga~~~l~~~~~~~---------~~-~~v~i~~P~y~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~~~~~--- 138 (354)
T PRK06358 78 NGATELIFNIVKVT---------KP-KKVLILAPTFAEYERAL----KAFDAEIEYAELTE--ETNFAANEIVLEEI--- 138 (354)
T ss_pred CCHHHHHHHHHHHh---------CC-CcEEEecCChHHHHHHH----HHcCCeeEEEeCcc--ccCCCccHHHHHhh---
Confidence 99999999998864 33 58999999998765444 55699999986521 11111113334444
Q ss_pred ccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc------cc-ccccCccEEEEcCccc
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK------ID-VKEIGADFYVSNLHKW 254 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~------~~-~~~~~~d~~~~s~~K~ 254 (452)
..++++|++++|+||||..++ +++|.++|+++++ ++|+|+++..-... +. ....+--+++.|++|.
T Consensus 139 ---~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~-~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 214 (354)
T PRK06358 139 ---KEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNI-YLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKF 214 (354)
T ss_pred ---ccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCC-EEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhh
Confidence 346899999999999999997 5677888999999 79999997532211 11 1111234778899996
Q ss_pred CcCCCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 255 l~g~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
+|.+| +|++++. +.+++. + ..... ..+.+...+.+...+++.. . -+++.++.+++.+
T Consensus 215 -~gl~G~RiG~lv~~~~~~~~~-~-~~~~~-------------~~~~~~~~q~~~~~~l~~~-~---~~~~~~~~~~~~r 274 (354)
T PRK06358 215 -FAIPGLRLGYGLTSNKNLAEK-L-LQMRE-------------PWSINTFADLAGQTLLDDK-E---YIKKTIQWIKEEK 274 (354)
T ss_pred -ccCcchhheeeecCCHHHHHH-H-HHhCC-------------CCcchHHHHHHHHHHhccH-H---HHHHHHHHHHHHH
Confidence 67666 8888775 455443 1 11100 0122222333333333211 1 2356677778888
Q ss_pred HHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
+.+.+.|.+.+++.+..+. ++++|++++ +..++.+.|.+ +||.+..+..+.. .
T Consensus 275 ~~l~~~L~~~~~~~~~~~~---g~f~~~~~~---------~~~~~~~~l~~-~gI~v~~~~~f~~--------------~ 327 (354)
T PRK06358 275 DFLYNGLSEFKGIKVYKPS---VNFIFFKLE---------KPIDLRKELLK-KGILIRSCSNYRG--------------L 327 (354)
T ss_pred HHHHHHHhcCCCcEEcCCc---ceEEEEEcC---------chHHHHHHHHH-CCeEEEECCCCCC--------------C
Confidence 8899999877666655443 568888886 23678888876 5999987665421 2
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..+++|+++. +.++.++++++|++++
T Consensus 328 ~~~~iRls~~---~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 328 DENYYRVAVK---SREDNKKLLKALEVIL 353 (354)
T ss_pred CCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 3579999998 8999999999998875
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=221.62 Aligned_cols=348 Identities=17% Similarity=0.202 Sum_probs=225.9
Q ss_pred hccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEec
Q 012991 33 FSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVD 105 (452)
Q Consensus 33 ~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~ 105 (452)
....+.+++.|+.+.+. ..|..+.+++.+.... . ....|....+...+|+.+++++ +.+ +++ +|++|+
T Consensus 28 ~~~~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~----~-~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~ 102 (403)
T PRK08636 28 ARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQK----P-KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATM 102 (403)
T ss_pred HHhcCCCEEEcCCcCCCCCCCHHHHHHHHHHhcC----C-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECC
Confidence 33345678889887765 3455566666554321 1 1123444455667777777765 532 355 799999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-H----HHHHHH
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-I----NEFKKG 180 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~----~~l~~~ 180 (452)
|+++++.+++.++ +++||.|++++|+|+.....+ ...|.+++.++++. ++...+ . +.++++
T Consensus 103 G~~~al~~~~~~l--------~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~ 168 (403)
T PRK08636 103 GSKEGYVHLVQAI--------TNPGDVAIVPDPAYPIHSQAF----ILAGGNVHKMPLEY--NEDFELDEDQFFENLEKA 168 (403)
T ss_pred ChHHHHHHHHHHh--------CCCCCEEEEcCCCCcchHHHH----HhcCCEEEEEeccc--cccCccChhhhhhHHHHH
Confidence 9999999999987 589999999999998875554 44699999986631 111122 3 356666
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----ccc---cccc-CccEEEE
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KID---VKEI-GADFYVS 249 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~---~~~~-~~d~~~~ 249 (452)
+++. ..+++++++++|+||||.+++. ++|+++|++|++ ++|+|++++.... ... +... +..+++.
T Consensus 169 ~~~~---~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~-~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~ 244 (403)
T PRK08636 169 LRES---SPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERF-YIISDIAYADITFDGYKTPSILEVEGAKDVAVESY 244 (403)
T ss_pred Hhhc---cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCc-EEEEeccchhhccCCCCCCChhcCCCccccEEEEE
Confidence 6432 3578999999999999999985 567888999999 7999999763221 111 1111 2234578
Q ss_pred cCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 250 NLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
|++|. +|.+| +|+++.+++++.. + ...... ...+++. ..+.++..+++.... -++.+++.+
T Consensus 245 S~SK~-~~~~GlRiG~iv~~~~li~~-~-~~~~~~----------~~~~~~~-~~q~~~~~~~~~~~~---~~~~~~~~~ 307 (403)
T PRK08636 245 TLSKS-YNMAGWRVGFVVGNKKLVGA-L-KKIKSW----------LDYGMFT-PIQVAATIALDGDQS---CVEEIRETY 307 (403)
T ss_pred ecccc-cCCccceeeeeeCCHHHHHH-H-HHHHHH----------hcccCCh-HHHHHHHHHHhCcHH---HHHHHHHHH
Confidence 99996 66556 8998888877764 1 111000 0001111 122222222221111 255667777
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
+++++.+.+.|.+. ++.+..+.+ +.++|+.+|+... ..+..++.+.+.+++||.+.++..+..
T Consensus 308 ~~~~~~l~~~L~~~-~~~~~~p~~--g~~~~~~l~~~~~---~~~~~~l~~~ll~~~gV~v~pg~~f~~----------- 370 (403)
T PRK08636 308 RKRRDVLIESFANA-GWELQKPRA--SMFVWAKIPEPAR---HLGSLEFSKQLLTEAKVAVSPGIGFGE----------- 370 (403)
T ss_pred HHHHHHHHHHHHHC-CCcccCCCc--ceEEEEECCCccC---CCCHHHHHHHHHHhCCEEEecchhhCc-----------
Confidence 88888888988876 666555544 7899999873211 224567887765556999987665522
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+++||+++ .+.++++..++.|+++++.
T Consensus 371 ---~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 371 ---YGDEYVRIALI--ENENRIRQAARNIKKFLKE 400 (403)
T ss_pred ---CCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 23579999997 4788899999999888754
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=219.19 Aligned_cols=338 Identities=16% Similarity=0.143 Sum_probs=226.8
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhh--hhhhHHHHHHHHHHHhHhCCC-CC-CcEEEecChhHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYF--NSLRKGILESRAAVKDLINAD-DV-GEISLVDNATTAA 111 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~-~~-~~i~~t~g~t~a~ 111 (452)
+.++++|+.|.+. +.++.+.+++.+.+... ...|. .+..++.+.+.+.+.++++.+ ++ +++++|+|+++|+
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al 104 (386)
T PRK09082 29 EHGAINLSQGFPDFDGPPYLVEALAYAMAAG----HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEAL 104 (386)
T ss_pred hCCEEEecCCCCCCCCCHHHHHHHHHHHHcC----CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHH
Confidence 4678999987665 34667888887765421 11111 223444555666666667764 23 3799999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++ +.+||+|++++|.|.+....+. ..|.++..++++. +...+ ++++++.+ .++
T Consensus 105 ~~~~~~~--------~~~gd~Vli~~p~y~~~~~~~~----~~g~~~~~~~~~~---~~~~~d~~~l~~~~------~~~ 163 (386)
T PRK09082 105 FAAILAL--------VRPGDEVIVFDPSYDSYAPAIE----LAGGRAVRVALQP---PDFRVDWQRFAAAI------SPR 163 (386)
T ss_pred HHHHHHH--------cCCCCEEEEeCCCchhhHHHHH----HcCCEEEEEecCc---ccccCCHHHHHHhc------Ccc
Confidence 9999876 5899999999999998766554 3599999996521 12334 78899888 467
Q ss_pred eEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cc---cccc-cCccEEEEcCcccCcCCC
Q 012991 191 IRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KI---DVKE-IGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~---~~~~-~~~d~~~~s~~K~l~g~~ 259 (452)
+++|++++++||||..++ +++|.++|++|++ ++|+|++++.... .. .... .+..+++.|++|. +|.+
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i-~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~-~~~~ 241 (386)
T PRK09082 164 TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDI-YVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKT-YHVT 241 (386)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCE-EEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhh-ccch
Confidence 899999999999999865 6678999999999 7999999754221 11 1111 1345788899996 6666
Q ss_pred C--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 260 S--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 260 G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
| +|+++++++++.. + .... .....+.+...+.++. .++.......+++++.++++++.+.+.
T Consensus 242 G~RiG~iv~~~~l~~~-~-~~~~-----------~~~~~~~~~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~ 305 (386)
T PRK09082 242 GWKVGYCVAPAALSAE-F-RKVH-----------QYNTFTVNTPAQLALA---DYLRAEPEHYLELPAFYQAKRDRFRAA 305 (386)
T ss_pred hhhhhhhhCCHHHHHH-H-HHHH-----------hhhcCCCChHHHHHHH---HHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 6 7999988777664 1 1110 0000122333333333 333211113566677788889999999
Q ss_pred HHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 338 LANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 338 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
|.+. ++++..+.+ +.++|+.+++. .+.+..++++.|.+++||.+.++..+... ....+++|
T Consensus 306 L~~~-~~~~~~~~g--~~~~~~~~~~~----~~~~~~~~~~~l~~~~~v~v~pg~~f~~~------------~~~~~~~R 366 (386)
T PRK09082 306 LANS-RFKLLPCEG--TYFQLVDYSAI----SDLDDVEFCQWLTREHGVAAIPLSVFYAD------------PFPHRLVR 366 (386)
T ss_pred HHhC-CCcccCCCe--eEEEEEecccc----CCCCHHHHHHHHHHhCCEEEeCcHHhCCC------------CCCCCEEE
Confidence 9874 666654443 66788887621 13467789888766679999776544211 12357999
Q ss_pred ecccccCCHHHHHHHHHHHHH
Q 012991 418 ISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~ 438 (452)
++++. ++++++..+++|++
T Consensus 367 i~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 367 LCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred EEecC--CHHHHHHHHHHHhh
Confidence 99985 68889888888865
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=220.77 Aligned_cols=340 Identities=16% Similarity=0.122 Sum_probs=218.5
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh---CCCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI---NADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~~i~~t~g~t~a~~ 112 (452)
+.+++.|+.+.+. ..|+.+.+++.+.+..... +.....|....+..++|+++++++ +++ +++|++|+|+++++.
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~-~d~I~it~Ga~~al~ 109 (402)
T TIGR03542 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDELAS-EETFRGYGPEQGYPFLREAIAENDYRGRID-PEEIFISDGAKCDVF 109 (402)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccc-cccccCCCCCCCCHHHHHHHHHHHHhcCCC-HHHEEECCCcHHHHH
Confidence 4678999988766 4567788888887654211 111123444567888999999976 564 799999999999998
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc-----------EEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG-----------SVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-----------~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
.++. + +.+|++|++++|+|......+ +..|. +++.++. +.++.+ .+ ++
T Consensus 110 ~l~~-l--------~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~v~~----~~~~~~~~~-~~-- 169 (402)
T TIGR03542 110 RLQS-L--------FGSDNTVAVQDPVYPAYVDSN----VMAGRAGVLDDDGRYSKITYLPC----TKENNFIPD-LP-- 169 (402)
T ss_pred HHHH-h--------cCCCCEEEEeCCCCcchHHHH----HHcCCccccccccccceEEEeec----chhhCCCCC-cc--
Confidence 8643 3 478999999999998875554 44577 8887743 221112 22 11
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC----cccccccc----CccEEEE
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKEI----GADFYVS 249 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~~----~~d~~~~ 249 (452)
. ..++++|++++|+||||.+++ +++|+++|+++++ ++|+|++++... .+..+... +..+++.
T Consensus 170 --~----~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~-~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~ 242 (402)
T TIGR03542 170 --E----EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGS-LILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFR 242 (402)
T ss_pred --c----cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCe-EEEEEchhhhhccCCCCCcchhhCCCCcccEEEEe
Confidence 1 257899999999999999998 6678889999999 799999986422 11111111 2246678
Q ss_pred cCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhh-cCHHHHHHH
Q 012991 250 NLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFE-GGIDGIMQR 326 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~g~~~~~~~ 326 (452)
|++|. +|.+| +|+++++++++.. ........ ... .... ...+.+...+ .++...+.... .-....++.
T Consensus 243 SfSK~-~g~pGlRiG~~i~~~~l~~~-~~~~~~~~-~~~--~~~~-~~~~~s~~~q---~~~~~~l~~~~~~~~~~~~~~ 313 (402)
T TIGR03542 243 SFSKT-AGFTGVRLGWTVVPKELTYA-DGHSVIQD-WER--RQCT-KFNGASYPVQ---RAAEAAYAGEGLQPILEAISY 313 (402)
T ss_pred cCccc-cCCCCcceEEEEecHHHhhc-chhhHHHH-HHH--Hhhh-cccCCCHHHH---HHHHHHHcCcchhHHHHHHHH
Confidence 99995 77666 8999988776521 00000000 000 0000 0011222222 22233332100 013344566
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGAR 406 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~ 406 (452)
++++++.+.+.|.+. ++++..+.+ ++++|+.++ ...+..++.+.|.++.||.+.++..+..
T Consensus 314 ~~~~~~~~~~~L~~~-~~~~~~~~~--~~f~~v~l~------~~~~~~~l~~~l~~~~gv~v~pg~~f~~---------- 374 (402)
T TIGR03542 314 YMENARILRKALEAA-GFKVYGGEH--APYLWVKTP------EGISSWDFFDFLLYQYHVVGTPGSGFGP---------- 374 (402)
T ss_pred HHHHHHHHHHHHHhc-CceecCCCc--eeEEEEECC------CCCCHHHHHHHHHHhCCEEEeCchhhCC----------
Confidence 677788888888875 666554433 779999987 3456678888877656999987655421
Q ss_pred CCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 407 DKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 407 ~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
...+++||++.. +++++++.++.|+++
T Consensus 375 ----~~~~~iRis~~~--~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 375 ----SGEGFVRFSAFG--KRENIVEACERIKEA 401 (402)
T ss_pred ----CCCCEEEEEecC--CHHHHHHHHHHHHhh
Confidence 235799999754 788899999988765
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=217.54 Aligned_cols=342 Identities=15% Similarity=0.135 Sum_probs=224.8
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH----hCCC-CCC-cEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL----INAD-DVG-EISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~-~~~-~i~~t~g~t~a 110 (452)
..++.|+.+.+. ..|..+.+++.+.+.. ... .|....+..++|+.++++ +|.+ +++ +|++|+|+++|
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~--~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~a 97 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEAAQEAIAG----GVN--QYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEA 97 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhc----CCC--CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHH
Confidence 578899887765 3455566666654432 111 232334456666666664 5653 233 79999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++||+|+++.|.|++....+ ...|.+++.+++... ...+.+ ++++++.+ .+
T Consensus 98 l~~~~~~~--------~~~gd~vli~~p~y~~~~~~~----~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~~------~~ 158 (387)
T PRK07777 98 IAAAVLGL--------VEPGDEVLLIEPYYDSYAAVI----AMAGAHRVPVPLVPD-GRGFALDLDALRAAV------TP 158 (387)
T ss_pred HHHHHHHh--------cCCCCEEEEeCCCchhhHHHH----HHCCCEEEEeecCCc-cCCCcCCHHHHHHhc------Cc
Confidence 99988876 578999999999998865443 446888888865311 112234 88999888 46
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC------cccc-ccc-cCccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS------IKID-VKE-IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~------~~~~-~~~-~~~d~~~~s~~K~l~g~ 258 (452)
++++|++++++||||..++ +++|.++|+++++ ++|+|++++... .++. +.. .+.++++.|++|. +|.
T Consensus 159 ~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~ 236 (387)
T PRK07777 159 RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDL-LVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKT-FNV 236 (387)
T ss_pred ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCc-EEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhh-ccC
Confidence 7899999999999999986 6678999999999 799999986422 1111 111 2357889999996 665
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|+++.++++++. + ..... ......+...+.++..++..... -.+.+++.++++++.+.+
T Consensus 237 ~GlRiG~~~~~~~l~~~-~-~~~~~-----------~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~ 300 (387)
T PRK07777 237 TGWKIGWACGPAPLIAA-V-RAAKQ-----------YLTYVGGAPFQPAVAHALDHEDA---WVAALRDSLQAKRDRLAA 300 (387)
T ss_pred cCceeEEEecCHHHHHH-H-HHHHh-----------hcccCCCCHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHH
Confidence 66 7888888776654 1 11100 00011122222222223322111 245667788899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.+. ++++..++. ++++|+.++.. ...++.++++.|.+++||.+.++..+.... ....+++
T Consensus 301 ~L~~~-~~~~~~~~g--~~~~~~~~~~~----~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~-----------~~~~~~~ 362 (387)
T PRK07777 301 GLAEA-GFEVHDSAG--TYFLCADPRPL----GYDDGTEFCRALPERVGVAAIPMSVFYDPA-----------DAWNHLV 362 (387)
T ss_pred HHHhC-CCCccCCCc--ceEEEeccccc----CCCCHHHHHHHHHHhCCEEEeCchHhCCCC-----------cCCCCeE
Confidence 99886 777665543 66777776410 123567899999755799997765442100 1234689
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
||+++. .+++++..++.|++++.+
T Consensus 363 Ri~~~~--~~~~l~~~l~~l~~~~~~ 386 (387)
T PRK07777 363 RFAFCK--RDDTLDEAIRRLRALRGR 386 (387)
T ss_pred EEEecC--CHHHHHHHHHHHHHHhcC
Confidence 999985 688899999999887654
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=219.70 Aligned_cols=336 Identities=14% Similarity=0.087 Sum_probs=220.6
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC---CC-CcEEEecC
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD---DV-GEISLVDN 106 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~---~~-~~i~~t~g 106 (452)
.+.+++.|+.+.+. ..|+.+.+++.+..... ..|....+..++|+++++++ +.+ ++ ++|++|+|
T Consensus 26 ~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~-------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~G 98 (393)
T TIGR03538 26 ASKPPIALSIGEPKHPTPAFVLEALRENLHGL-------STYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNG 98 (393)
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHHhhcc-------CCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCC
Confidence 46789999888776 46777888888764322 12333344667777788776 322 25 47999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCE--EEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDT--VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~--Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
+++++.+++.++ +++||. |+++.|.|...... +...|.+++.+++. .++...+ .+.+++.+
T Consensus 99 a~~al~~~~~~l--------~~~gd~~~vlv~~P~y~~~~~~----~~~~g~~~~~v~~~--~~~~~~~d~~~l~~~~-- 162 (393)
T TIGR03538 99 TREALFAFAQAV--------INPGQAPLVVMPNPFYQIYEGA----ALLAGAEPYFLNCT--AENGFLPDFDAVPESV-- 162 (393)
T ss_pred cHHHHHHHHHHH--------cCCCCcceEEecCCCCcchHHH----HHhcCCeEEEeecc--ccCCCCCCHHHHHHHH--
Confidence 999999999987 478875 89999999875443 45579999999652 1111233 78888887
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc-----ccc----cc-----ccCccE
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI-----KID----VK-----EIGADF 246 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~----~~-----~~~~d~ 246 (452)
.+++++|++++|+||||.+++ +++|+++|++|++ ++|+|+++..... +.. .. ...-.+
T Consensus 163 ----~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~-~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 237 (393)
T TIGR03538 163 ----WRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGF-IIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCL 237 (393)
T ss_pred ----hhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCE-EEEECcchhhcccCCCCCCcCHHHhcccccccccccEE
Confidence 357899999999999999998 5678888999999 7999999763221 111 00 111237
Q ss_pred EEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHH
Q 012991 247 YVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIM 324 (452)
Q Consensus 247 ~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~ 324 (452)
++.|++|. ++.+| +|+++.++++++. + ..+. .......+...+.++.+++.. . ..++..+
T Consensus 238 ~i~S~SK~-~~~~GlRvG~~i~~~~l~~~-~-~~~~-----------~~~~~~~~~~~q~~~~~~l~~-~---~~~~~~~ 299 (393)
T TIGR03538 238 VFHSLSKR-SNLPGLRSGFVAGDAEILKA-F-LRYR-----------TYHGCAMPIPTQLASIAAWND-E---QHVRENR 299 (393)
T ss_pred EEecchhh-cCCcccceEEEecCHHHHHH-H-HHHH-----------HhhccCcCHHHHHHHHHHhcC-h---HHHHHHH
Confidence 88899995 55555 8998888777664 1 1110 000011222222222222211 1 1356667
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCC
Q 012991 325 QRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG 404 (452)
Q Consensus 325 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~ 404 (452)
+.++++++.+.+.|.+. +.+..|.+ +.++|+.++ .+..++.+.|.+++||.+.++..+..... +
T Consensus 300 ~~~~~~~~~~~~~L~~~--~~~~~p~g--g~f~~~~~~--------~~~~~~~~~l~~~~gV~v~pg~~f~~~~~-~--- 363 (393)
T TIGR03538 300 ALYREKFAAVLEILGQV--LDLELPDA--GFYLWPKVP--------GDDEAFARALYEEENVTVLPGRFLAREAE-G--- 363 (393)
T ss_pred HHHHHHHHHHHHHHHhh--CcccCCCe--eEEEEEECC--------CCHHHHHHHHHHHCCEEEeCCcccccccc-C---
Confidence 77788888888888764 33334443 788999885 13467888876657999976654421000 0
Q ss_pred CCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 405 ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 405 ~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.....+++|||+.. +.++++..+++|+++
T Consensus 364 ----~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 364 ----VNPGEGRVRIALVA--PLEECVEAAERIRSF 392 (393)
T ss_pred ----CCCCCCEEEEEecC--CHHHHHHHHHHHHHh
Confidence 01234799999975 688899999888764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=223.94 Aligned_cols=358 Identities=12% Similarity=0.107 Sum_probs=228.2
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHh-c-----CCchhhhhhhhHHHHHHHHHHHhHhC--------CCCCCcEEE
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFL-Q-----QPDDFYFNSLRKGILESRAAVKDLIN--------ADDVGEISL 103 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~i~~ 103 (452)
.++|.|+.+.....+..+.+.++....... . .+.....|....+..++|++++++++ ++ +++|++
T Consensus 38 ~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~-~~~Iii 116 (468)
T PLN02450 38 SGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFD-PNKLVL 116 (468)
T ss_pred CeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcC-hHHeEE
Confidence 368999988766666545555544322110 0 01122224444566778888888875 33 789999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|+++++..++.++ +++||.|++++|.|+.+...+. ...|++++.+++.. ++...+ ++.++++++
T Consensus 117 t~Ga~~al~~l~~~l--------~~pGd~Vlv~~P~Y~~~~~~~~---~~~g~~~v~v~~~~--~~~~~~~~~~le~~~~ 183 (468)
T PLN02450 117 TAGATSANETLMFCL--------AEPGDAFLLPTPYYPGFDRDLK---WRTGVEIVPIHCSS--SNGFQITESALEEAYQ 183 (468)
T ss_pred ccChHHHHHHHHHHh--------CCCCCEEEECCCCCCchHHHHh---hcCCcEEEEEecCC--ccCCcCCHHHHHHHHH
Confidence 999999999999987 5899999999999988755553 23688998886521 122233 677887775
Q ss_pred ccccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCc---c----cccc---------ccC
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSI---K----IDVK---------EIG 243 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~---~----~~~~---------~~~ 243 (452)
+....+.++++|++++|+||||.+++.+ +|.++|+++++ ++|+|++++.-.. + +... ...
T Consensus 184 ~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~-~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~ 262 (468)
T PLN02450 184 QAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNI-HLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSN 262 (468)
T ss_pred HHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCc-EEEEEccccccccCCCCcccHHHHhhhcccccCCCCC
Confidence 3222245899999999999999999855 67888999999 7999999873211 1 1110 112
Q ss_pred ccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHH
Q 012991 244 ADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID 321 (452)
Q Consensus 244 ~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~ 321 (452)
-.+++.|++|. +|.+| +|+++.+++.+...+ ... . ..+..+...+.++..+++.-.....-++
T Consensus 263 ~vi~l~S~SK~-~~l~GlRiG~li~~~~~l~~~~-~~~-----------~--~~~~~s~~~Q~a~~~~L~~~~~~~~~l~ 327 (468)
T PLN02450 263 RVHIVYSLSKD-LGLPGFRVGAIYSNDEMVVSAA-TKM-----------S--SFGLVSSQTQYLLSALLSDKKFTKNYLE 327 (468)
T ss_pred cEEEEEecccc-CCCCCccEEEEEECCHHHHHHH-HHH-----------h--hcCCCCHHHHHHHHHHhCCchhHHHHHH
Confidence 34778899996 56556 899988755432201 000 0 0011222333333333321100000145
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
..++++++.++.+.+.|.+. ++.+..+.. +.++|+.++.......-....++.+.|.++.||.+.++..+..
T Consensus 328 ~~~~~l~~rr~~l~~~L~~~-gi~~~~~~~--g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~----- 399 (468)
T PLN02450 328 ENQKRLKQRQKKLVSGLEAA-GIKCLKSNA--GLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHC----- 399 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCcccCCCc--eEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCC-----
Confidence 56777888888899999887 776655444 6789998863211111112345677776657999987665421
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
..++++|++++. .+.++++..+++|++++...
T Consensus 400 ---------~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~ 431 (468)
T PLN02450 400 ---------TEPGWFRVCFAN-MSEETLDLAMKRLKSFVESD 431 (468)
T ss_pred ---------CCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhc
Confidence 336799999985 35788999999999988643
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=222.70 Aligned_cols=355 Identities=12% Similarity=0.128 Sum_probs=229.9
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHh---c---CCchhhhhhhhHHHHHHHHHHHhHhC--------CCCCCcEEE
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFL---Q---QPDDFYFNSLRKGILESRAAVKDLIN--------ADDVGEISL 103 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~i~~ 103 (452)
.++|.|+.+.....-..+.+.+........ . .+.....+....+..++|+++|++++ + ++++|++
T Consensus 47 ~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v-~p~~Ivi 125 (447)
T PLN02607 47 SGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARF-DPDRIVL 125 (447)
T ss_pred CceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCc-CHHHeEE
Confidence 358888888766766666666655432110 0 01111113334567788888888775 3 3789999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|+++|+.+++.++ +.+||.|+++.|.|+++...+. .+.|++++.++++. ++...+ ++.++++++
T Consensus 126 t~G~t~al~~l~~~l--------~~pGD~Vlv~~P~Y~~f~~~~~---~~~g~~vv~v~~~~--~~~f~~~~~~le~a~~ 192 (447)
T PLN02607 126 TAGATAANELLTFIL--------ADPGDALLVPTPYYPGFDRDLR---WRTGVKIVPIHCDS--SNNFQVTPQALEAAYQ 192 (447)
T ss_pred cCChHHHHHHHHHHh--------CCCCCEEEEcCCCCcchHHHHH---hcCCcEEEEEeCCC--CCCCcCCHHHHHHHHH
Confidence 999999999998876 5899999999999998765543 24688888886531 122234 788888886
Q ss_pred ccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---cc-ccc---------c-cCcc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KI-DVK---------E-IGAD 245 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~-~~~---------~-~~~d 245 (452)
+.+..+.++++|++++|+||||..+| +++|.++|+++++ .+|+|++++.... ++ .+. . ..--
T Consensus 193 ~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i-~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v 271 (447)
T PLN02607 193 EAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNI-HLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERV 271 (447)
T ss_pred HHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCC-EEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcE
Confidence 54444568999999999999999998 5678889999999 7999999874321 11 110 0 1123
Q ss_pred EEEEcCcccCcCCCC--cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH---HHHHhhcC
Q 012991 246 FYVSNLHKWFFCPPS--VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT---FVSRFEGG 319 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G--~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~~g 319 (452)
+++.|++|. +|.+| +|+++. +++++.. + ... . . .+..+...+.++...++ +... -
T Consensus 272 ~vi~s~SK~-fg~~GlRvG~ivs~n~~l~~~-~-~~~-~-----------~-~~~~s~~~q~~~~~~L~d~~~~~~---~ 332 (447)
T PLN02607 272 HIVYSLSKD-LGLPGFRVGTIYSYNDKVVTT-A-RRM-S-----------S-FTLVSSQTQHLLASMLSDEEFTEN---Y 332 (447)
T ss_pred EEEEcchhc-CCCCcceEEEEEEcCHHHHHH-H-HHH-h-----------h-cCCCCHHHHHHHHHHhCCchhHHH---H
Confidence 567799995 67667 788887 4444432 1 000 0 0 01112222222222222 1111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 320 IDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
++..++++.+..+.+.+.|.+. ++.+..+.+ +.++|+.++............++.+.|.++.||.+.++..+.
T Consensus 333 l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~a--g~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~---- 405 (447)
T PLN02607 333 IRTNRERLRKRYEMIVQGLRRA-GIECLKGNA--GLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCH---- 405 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCcccCCe--eEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccC----
Confidence 4456677777888888888876 776555443 889999986321111112234677777665799997766542
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
...++|+|++++. .++++++..+++|+++++...
T Consensus 406 ----------~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~~~ 439 (447)
T PLN02607 406 ----------CSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDRRK 439 (447)
T ss_pred ----------CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 1347899999985 258889999999999987654
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-25 Score=217.11 Aligned_cols=346 Identities=13% Similarity=0.058 Sum_probs=224.4
Q ss_pred cCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhh--hhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHH
Q 012991 35 HHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYF--NSLRKGILESRAAVKDLINAD-DVGEISLVDNATTA 110 (452)
Q Consensus 35 ~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a 110 (452)
..+..++.|+.+.+. +.|+.+.+++.+.+... . ..|. .+..++.+.+.+.+++.+|.+ ++++|++|+|+++|
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~---~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 105 (402)
T PRK06107 30 AAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERG---E-TKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQA 105 (402)
T ss_pred hccCCEEEcCCCCCCCCCCHHHHHHHHHHHHcC---C-CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence 346778999988876 34566778877766421 1 1111 122334445555555555653 36799999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+..++.++ +++||+|++++|.|.+....+ ...+..+..++++ .++...+ ++.+++.+ .+
T Consensus 106 l~~~~~~~--------~~~gd~vl~~~p~y~~y~~~~----~~~~~~~~~v~~~--~~~~~~~~~~~l~~~~------~~ 165 (402)
T PRK06107 106 IFLALMAT--------LEAGDEVIIPAPYWVSYPDMV----LANDGTPVIVACP--EEQGFKLTPEALEAAI------TP 165 (402)
T ss_pred HHHHHHHh--------cCCCCEEEEecCCCcCHHHHH----HHcCCEEEEecCC--cccCCCCCHHHHHhhc------Cc
Confidence 99999865 589999999999887764444 3346677777542 1222234 78899888 46
Q ss_pred ceEEEEEeccCCCCcccccH---HHHHHHHHHc-CCCEEEEecccccCCc---c-ccccc-----cCccEEEEcCcccCc
Q 012991 190 MIRLAIIDHITSMPCVVIPV---RKLVKICRDE-GVDQVFVDAAHAMGSI---K-IDVKE-----IGADFYVSNLHKWFF 256 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~-~~~~~ivD~a~~~g~~---~-~~~~~-----~~~d~~~~s~~K~l~ 256 (452)
++++|++++|+||||..++. ++|+++|+++ ++ ++|+|++++.... + ..+.. .+..+++.|++|. +
T Consensus 166 ~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~-~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~-~ 243 (402)
T PRK06107 166 RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHV-LVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKT-Y 243 (402)
T ss_pred CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCe-EEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchh-h
Confidence 78999999999999999975 5668888998 99 7999998853211 0 11111 1234677899996 6
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
+.+| +|+++.++++++. + .... ......++...+.++..+++.... -.+..++.+.++++.+
T Consensus 244 ~~pGlRiG~~~~~~~~~~~-~-~~~~-----------~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 307 (402)
T PRK06107 244 AMTGWRIGYAAGPADLIAA-I-NKLQ-----------SQSSSCPSSISQAAAAAALNGDQS---FVTESVAVYKQRRDYA 307 (402)
T ss_pred cCcccceeeeecCHHHHHH-H-HHHH-----------HhcccCCChHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHH
Confidence 7666 6999888877765 1 1110 000122333333333333321111 2456677778888888
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccc--cCCh---hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLR--VMGE---DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
.+.|.+++++.+..|++ +.++|+.++.... ...+ .+..++.+.|.+++||.+.++..+
T Consensus 308 ~~~L~~~~g~~~~~p~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~F--------------- 370 (402)
T PRK06107 308 LALLNAIPGLSCLVPDG--AFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAY--------------- 370 (402)
T ss_pred HHHHhcCCCCcccCCCc--ceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCcccc---------------
Confidence 89888766766655544 6777877631100 0011 145567766655579999876654
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++. +.+++++.++.|++.++.
T Consensus 371 -g~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 400 (402)
T PRK06107 371 -GLSPYFRLSIAT--SLETLEEACARIERAVAA 400 (402)
T ss_pred -CCCCeEEEEeCC--CHHHHHHHHHHHHHHHHh
Confidence 224799999995 789999999999988754
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=209.97 Aligned_cols=368 Identities=16% Similarity=0.135 Sum_probs=244.8
Q ss_pred CCCCCCHHHHHhhhccCCCCeEE-eccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-
Q 012991 20 LTRCISEAEIRDEFSHHQHGVAR-INNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD- 96 (452)
Q Consensus 20 ~~~~~~~~~ir~~~~~~~~~~~~-l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~- 96 (452)
.+++.-+.++++.-.. +...+ |..|-+. +.|+-|.+++.........+ .....++..++...+++++++++|..
T Consensus 14 ~~~~~vw~e~~~la~e--~~~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~-qYt~~~G~p~L~~aL~k~~se~~~~~~ 90 (420)
T KOG0257|consen 14 TSKPYVWTEINRLAAE--HKVPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTN-QYTRGYGLPQLRKALAKAYSEFYGGLL 90 (420)
T ss_pred ccCCcHHHHHHHHHHh--cCCCCcccCCCCCCCCcHHHHHHHHHHhccchhc-cccccCCchHHHHHHHHHHHHHhcccc
Confidence 3445667777776543 33444 8888777 88898999998887653111 11124677888888999999988743
Q ss_pred -CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCC----CCChH
Q 012991 97 -DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFP----LASEE 171 (452)
Q Consensus 97 -~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~----~~~~~ 171 (452)
..++|++|.|+.+++..+++++ +.+||+|++.+|.|.+....+.+ .|.+++.+++.-. ..++.
T Consensus 91 ~~~~eVlVT~GA~~ai~~~~~~l--------~~~GDeVii~eP~fd~Y~~~~~m----aG~tpv~v~~~~~~g~~~s~~~ 158 (420)
T KOG0257|consen 91 DPDDEVLVTAGANEAISSALLGL--------LNPGDEVIVFEPFFDCYIPQVVM----AGGTPVFVPLKPKEGNVSSSDW 158 (420)
T ss_pred CCcccEEEecCchHHHHHHHHHH--------cCCCCEEEEecCcchhhhhHHhh----cCCcceeeccccccccccCccc
Confidence 2468999999999999999887 69999999999999998777655 5989999876300 12233
Q ss_pred HH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEeccccc----CC--ccc--cc
Q 012991 172 EI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAM----GS--IKI--DV 239 (452)
Q Consensus 172 ~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~----g~--~~~--~~ 239 (452)
.+ .++++..+ +++|++|++++|+||||.+++ +++|++||++||+ ++|.|+++.. |. ..+ ..
T Consensus 159 ~~D~~~le~~~------t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~-lvisDevYe~~v~d~~~h~r~aslP 231 (420)
T KOG0257|consen 159 TLDPEELESKI------TEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGL-LVISDEVYEWLVYDGNKHIRIASLP 231 (420)
T ss_pred cCChHHHHhhc------cCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCE-EEEEhhHhHHHhhCCCcceeeecCC
Confidence 44 89999999 899999999999999999997 6789999999999 8999998754 22 111 11
Q ss_pred cccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH--HH-H
Q 012991 240 KEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT--FV-S 314 (452)
Q Consensus 240 ~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~--~~-~ 314 (452)
..+...+-++|++|+ +|.+| +|+++.++.+... ...-... . ..+.+...+-|..+++. +. .
T Consensus 232 gm~ertitvgS~gKt-f~~TGWrlGW~igp~~L~~~-~~~vh~~----------~--~~~~~Tp~q~A~a~a~~~~~~~~ 297 (420)
T KOG0257|consen 232 GMYERTITVGSFGKT-FGVTGWRLGWAIGPKHLYSA-LFPVHQN----------F--VFTCPTPIQEASAAAFALELACL 297 (420)
T ss_pred chhheEEEeccccce-eeeeeeeeeeeechHHhhhh-HHHHhhc----------c--ccccCcHHHHHHHHHHhhhhhcc
Confidence 122345677899996 99999 8998885544443 1111100 0 01111112222222222 21 1
Q ss_pred Hhhc-C-HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCc--cc----cCChhhHHHHHHHHhhhcce
Q 012991 315 RFEG-G-IDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSR--LR----VMGEDDALRLRGHLRVRFGV 386 (452)
Q Consensus 315 ~~~~-g-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~L~~~~gI 386 (452)
..++ + ...+.+.++++++.+.+.|.++ |+++..|++ +.++|..++.. +. ..+..+...+..+|.++.|+
T Consensus 298 ~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~g--ayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv 374 (420)
T KOG0257|consen 298 QPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEG--AYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGV 374 (420)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCC--ceEEEEeccccccCCcchhhccCCCceeeehhhhccCcE
Confidence 0100 2 3347788899999999999998 999998887 67777766511 11 11112344678888888899
Q ss_pred EeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 387 EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
.+-+++.+..... .....+.+|+++.- +.+-++...+.|+
T Consensus 375 ~~IP~saF~s~~~---------~~~~~~~~r~~~~k--~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 375 VVIPPSAFGSREH---------IKVAERLVRFCFCK--ADETLRKAIERLK 414 (420)
T ss_pred EEeCchhcCCchh---------hHHHHHHHHHHHHh--hHHHHHHHHHHHh
Confidence 8765555432210 01124567777763 5555777777776
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=215.29 Aligned_cols=331 Identities=15% Similarity=0.162 Sum_probs=223.6
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISL 103 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~ 103 (452)
...+.+..+. ...++.|+.+... ..|+.+.+++.+...... .|....+ .+++++++++++++ +++|++
T Consensus 25 ~~~~~~~~~~--~~~~i~l~~~~~~~~~~~~~~~al~~~~~~~~-------~Y~~~~g-~~lr~~ia~~~~~~-~~~i~~ 93 (371)
T PRK05166 25 TIEEVRARYG--VPRIAKLGSNENPLGPSPAVRRAFADIAELLR-------LYPDPQG-RALREAIAARTGVP-ADRIIL 93 (371)
T ss_pred CHHHHHHhcC--CcceEEcCCCCCCCCCCHHHHHHHHHHHHHhh-------cCCCCcH-HHHHHHHHHHhCcC-HHHEEE
Confidence 3455565564 4578899877544 456668888876543322 1222233 37999999999996 789999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|+++++..++.++ +++||+|++..|+|+..... ++..|++++.+++ +.++.+ .+++++.+
T Consensus 94 t~G~~~~l~~~~~~~--------~~~gd~vli~~P~y~~~~~~----~~~~g~~~~~v~~----~~~~~~~~~~l~~~~- 156 (371)
T PRK05166 94 GNGSEDLIAVICRAV--------LRPGDRVVTLYPSFPLHEDY----PTMMGARVERVTV----TPDLGFDLDALCAAV- 156 (371)
T ss_pred cCCHHHHHHHHHHHh--------cCCCCEEEEcCCChHHHHHH----HHHcCCeEEEeec----CCCCCCCHHHHHHhh-
Confidence 999999999998876 58999999999999875433 4567999999954 333344 88898888
Q ss_pred ccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCc----c--cc-cccc-CccEEEEcCc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSI----K--ID-VKEI-GADFYVSNLH 252 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~----~--~~-~~~~-~~d~~~~s~~ 252 (452)
.+++++|++++++||||.++|.+++.++++. .++ ++|+|+++..... + +. .... ...+++.|++
T Consensus 157 -----~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfS 230 (371)
T PRK05166 157 -----ARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPET-LIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFS 230 (371)
T ss_pred -----hcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCc-EEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeech
Confidence 4678999999999999999998887777764 378 7999999753221 0 11 1111 1247888999
Q ss_pred ccCcCCCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 253 KWFFCPPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 253 K~l~g~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
|. +|.+| +|++++. +++++. + .... . ....+...+ .+++..+.. .+.+++.++.+++
T Consensus 231 K~-~~l~GlRiG~~i~~~~~l~~~-~-~~~~-----------~--~~~~~~~~q---~~~~~~l~~-~~~~~~~~~~~~~ 290 (371)
T PRK05166 231 KA-YGLAGLRVGYGLVSDPELVGL-L-DRVR-----------T--PFNVNGAAQ---AAALAALDD-EEHLAKGVALALA 290 (371)
T ss_pred Hh-hhcchhheeeeecCCHHHHHH-H-HHhc-----------c--CCCCCHHHH---HHHHHHhcC-HHHHHHHHHHHHH
Confidence 96 66666 7887764 455443 1 1110 0 011222222 222222221 1135666677778
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
.++.+.+.|.+. ++.+. ++. ++++|+.++ .+..++.+.|.++ ||.+.++..+
T Consensus 291 ~r~~l~~~L~~~-g~~~~-p~~--g~fl~~~~~--------~~~~~l~~~l~~~-gi~v~p~~~~--------------- 342 (371)
T PRK05166 291 ERERLKKELAEM-GYRIA-PSR--ANFLFFDAR--------RPASAVAEALLRQ-GVIVKPWKQP--------------- 342 (371)
T ss_pred HHHHHHHHHHHC-cCeeC-CCc--CCEEEEeCC--------CCHHHHHHHHHHC-CeEEecCCCC---------------
Confidence 888899999887 66643 333 678888764 2456788998764 9998765432
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
...+++|++++ +.++.+++.++|+++++
T Consensus 343 -~~~~~iRi~~~---~~~~~~~l~~~l~~i~~ 370 (371)
T PRK05166 343 -GFETFIRVSIG---SPEENDHFVAALDKVLE 370 (371)
T ss_pred -CCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence 23579999998 68889999999988753
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-26 Score=220.07 Aligned_cols=282 Identities=11% Similarity=0.074 Sum_probs=196.1
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 160 (452)
..++++++++++|++ +++|++|+|+++++.+++.++ .++| ++|+++.|+|...... ++..|++++.
T Consensus 59 ~~~l~~~~a~~~g~~-~~~I~~~~Gs~e~i~~~~~~~--------~~~g~~~vli~~P~y~~y~~~----~~~~G~~~~~ 125 (351)
T PRK01688 59 PKAVIENYAAYAGVK-PEQVLVSRGADEGIELLIRAF--------CEPGKDAILYCPPTYGMYSVS----AETIGVEIRT 125 (351)
T ss_pred hHHHHHHHHHHhCCC-HHHEEEcCCHHHHHHHHHHHh--------cCCCCCEEEEcCCCHHHHHHH----HHHcCCEEEE
Confidence 478999999999996 899999999999999999976 4676 8999999999865333 4567999999
Q ss_pred EeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCcc-
Q 012991 161 VQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSIK- 236 (452)
Q Consensus 161 ~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~~- 236 (452)
+++ +++..+ ++++++++ .++++|++++|+||||.+++.+++.++++.. ++ ++|+|+++.-....
T Consensus 126 v~~----~~~~~~d~~~l~~~~-------~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~-~vivDEay~~f~~~~ 193 (351)
T PRK01688 126 VPT----LDNWQLDLPAIADNL-------DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKA-IVVADEAYIEFCPQA 193 (351)
T ss_pred eec----CCCCCCCHHHHHHhc-------cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCc-EEEEECchhhcCCCC
Confidence 965 223334 78888766 3689999999999999999988877776542 68 79999997533211
Q ss_pred --cc-ccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 237 --ID-VKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 237 --~~-~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
.+ +....--+++.|++|+ +|++| +|++++++++++. + ...... ...+.. +..++..
T Consensus 194 s~~~~~~~~~n~iv~rSfSK~-~glaGlRiGy~i~~~~~i~~-l-~~~~~~-------------~~v~~~---~~~~a~~ 254 (351)
T PRK01688 194 SLAGWLAEYPHLVILRTLSKA-FALAGLRCGFTLANEEVINL-L-LKVIAP-------------YPLSTP---VADIAAQ 254 (351)
T ss_pred ChHHHHhhCCCEEEEecchHh-hcCHHHHHhHHhCCHHHHHH-H-HhccCC-------------CCCCHH---HHHHHHH
Confidence 11 1112234778899995 78777 6999988888765 2 111000 011111 1222333
Q ss_pred HHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee
Q 012991 312 FVSRF-EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI 390 (452)
Q Consensus 312 ~~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~ 390 (452)
.+... .+-+++.++.+.+.++++.+.|.+++++..+.|+. ++++++.++ ++.++.+.|.+ +||.++.
T Consensus 255 ~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~--~nfi~~~~~---------~~~~l~~~L~~-~gi~vr~ 322 (351)
T PRK01688 255 ALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSE--TNYILARFT---------ASSAVFKSLWD-QGIILRD 322 (351)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCC--CcEEEEEcC---------CHHHHHHHHHH-CCeEEEE
Confidence 33310 00134445666777888999998876664334443 778888774 35688898876 4999976
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 391 HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
+..+. ..++++|||++ +.+|+++++++|+
T Consensus 323 ~~~~~---------------~~~~~iRis~~---~~~e~~~l~~al~ 351 (351)
T PRK01688 323 QNKQP---------------GLSNCLRITIG---TREECQRVIDALR 351 (351)
T ss_pred CCCcC---------------CCCCeEEEeCC---CHHHHHHHHHhhC
Confidence 43321 22579999998 7899999999874
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=218.21 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=194.5
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 160 (452)
..++++++++++|++ +++|++|+|+++++.+++.++ .++| |+|++++|.|...... ++..|++++.
T Consensus 62 ~~~Lr~aia~~~~~~-~~~I~it~Gs~~~i~~~~~~~--------~~~g~d~vlv~~P~y~~y~~~----~~~~g~~v~~ 128 (354)
T PRK04635 62 PPELINAYSAYAGVA-PEQILTSRGADEAIELLIRAF--------CEPGQDSIACFGPTYGMYAIS----AETFNVGVKA 128 (354)
T ss_pred HHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHHHHh--------cCCCCCeEEEcCCChHHHHHH----HHHcCCEEEE
Confidence 578999999999996 899999999999999999987 4677 8999999999864433 4667999999
Q ss_pred EeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc-CCCEEEEecccccCCcc--
Q 012991 161 VQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE-GVDQVFVDAAHAMGSIK-- 236 (452)
Q Consensus 161 ~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~-~~~~~ivD~a~~~g~~~-- 236 (452)
++++ +++.+ .+.++ .+ +++++|++++|+||||.++|.+++.++++.. ++ ++|+|+++......
T Consensus 129 v~~~----~~~~~~~~~l~-~~-------~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~-~vivDeay~~~~~~~s 195 (354)
T PRK04635 129 LPLT----ADYQLPLDYIE-QL-------DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDA-IVVVDEAYIEFCPEYS 195 (354)
T ss_pred EecC----CCCCCCHHHHH-hc-------cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCc-EEEEeCchHhhccCcc
Confidence 9653 22233 56554 22 4789999999999999999999999998764 68 79999997533211
Q ss_pred -cccc-ccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 237 -IDVK-EIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 237 -~~~~-~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
.++. ...--+++.|+||+ +|++| +|++++++++++. + ...... ...+. .....++..
T Consensus 196 ~~~~~~~~~~~iv~~S~SK~-~~l~GlRlG~~i~~~~~~~~-l-~~~~~~-------------~~~~~---~~~~~a~~~ 256 (354)
T PRK04635 196 VADLLASYPNLVVLRTLSKA-FALAGARCGFTLANEELIEI-L-MRVIAP-------------YPVPL---PVSEIATQA 256 (354)
T ss_pred hHHHHhhCCCEEEEechHHH-hhhhHHHHhhhhCCHHHHHH-H-HhhcCC-------------CCCCH---HHHHHHHHH
Confidence 1111 11223677899996 67666 7999998887765 2 111000 01111 112234444
Q ss_pred HHHhhcCH---HHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEee
Q 012991 313 VSRFEGGI---DGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVP 389 (452)
Q Consensus 313 ~~~~~~g~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~ 389 (452)
+... +. ++.++++++.++.+.+.|.+++++++..+ . ++++++.++ +..++.+.|.+ +||.++
T Consensus 257 l~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~--g~f~~~~~~---------~~~~~~~~l~~-~gv~v~ 321 (354)
T PRK04635 257 LSEA--GLARMKFQVLDLNAQGARLQAALSMYGGAKVLEG-N--GNYVLAKFD---------DVDAVFKALWD-AGIVAR 321 (354)
T ss_pred Hhcc--cHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCC-C--CcEEEEECC---------CHHHHHHHHHH-CCEEEE
Confidence 4321 33 33445566777889999988755665543 2 568888775 34577787865 599997
Q ss_pred ecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 390 IHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.+... ..++++|+|++ +.+|+++++++|++.
T Consensus 322 ~~~~~----------------~~~~~lRis~~---~~e~~~~l~~al~~~ 352 (354)
T PRK04635 322 AYKDP----------------RLANCIRFSFS---NRAETDKLIGLIRNQ 352 (354)
T ss_pred ECCCC----------------CCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence 43211 23569999986 899999999999865
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=217.75 Aligned_cols=299 Identities=16% Similarity=0.176 Sum_probs=210.0
Q ss_pred hhhhHHHHHHHHHHHhHhCCC-----CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH
Q 012991 76 NSLRKGILESRAAVKDLINAD-----DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY 150 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~-----~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~ 150 (452)
+.......++++.++++++.. ..+++++++|+|+++..++.++ .++|++|+++++.|.++...+
T Consensus 32 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~--------~~~g~~vl~~~~~~~~~~~~~--- 100 (350)
T cd00609 32 YYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL--------LNPGDEVLVPDPTYPGYEAAA--- 100 (350)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh--------CCCCCEEEEcCCCchhHHHHH---
Confidence 344455677777777777642 1468999999999999999877 477999999999999987665
Q ss_pred HHhcCcEEEEEeCCCCCCChHHH-H--HHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHH---HHHHHHcCCCEE
Q 012991 151 VTRAGGSVVEVQLPFPLASEEEI-I--NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKL---VKICRDEGVDQV 224 (452)
Q Consensus 151 a~~~g~~v~~~~~~~~~~~~~~~-~--~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i---~~l~~~~~~~~~ 224 (452)
+..|.+++.++.. +.+.. . +.+++.+ .+++++|++++++|++|.+.|++++ .++|+++|+ ++
T Consensus 101 -~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~------~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~-~~ 168 (350)
T cd00609 101 -RLAGAEVVPVPLD----EEGGFLLDLELLEAAK------TPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGI-LI 168 (350)
T ss_pred -HHCCCEEEEEecc----cccCCccCHHHHHhhc------CccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCe-EE
Confidence 4468999999653 22222 2 4455444 5789999999999999999987655 489999999 79
Q ss_pred EEecccccCCcc-------ccccccCccEEEEcCcccCc-CCCCcEEEEEec-CccccCCCCCceeccCCCCcccccccc
Q 012991 225 FVDAAHAMGSIK-------IDVKEIGADFYVSNLHKWFF-CPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWI 295 (452)
Q Consensus 225 ivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~l~-g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 295 (452)
|+|++++.+... ......+.|+++.|++|+++ ++.++|++++++ ++.+. + .... ....
T Consensus 169 ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~-~-~~~~-----------~~~~ 235 (350)
T cd00609 169 ISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLER-L-KKLL-----------PYTT 235 (350)
T ss_pred EEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHH-H-HHHH-----------Hhcc
Confidence 999998764421 22334567899999999865 455589999988 55554 1 1110 0012
Q ss_pred cccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHH
Q 012991 296 GTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 296 ~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
++++...+.++..+++...+ +.+.++++++++++++.+.|.+.+...+..+ ..+.++++.++ ...+...
T Consensus 236 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~g~~~~~~~~------~~~~~~~ 304 (350)
T cd00609 236 SGPSTLSQAAAAAALDDGEE---HLEELRERYRRRRDALLEALKELGPLVVVKP--SGGFFLWLDLP------EGDDEEF 304 (350)
T ss_pred cCCChHHHHHHHHHHhCcHH---HHHHHHHHHHHHHHHHHHHHHhcCCccccCC--CccEEEEEecC------CCChHHH
Confidence 34455555555555554422 5788888999999999999998754443222 23678888776 2234556
Q ss_pred HHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 376 LRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
+.+.|.+ +||.+.....+.. ..+.++|++++.. .+|+++++++|++
T Consensus 305 ~~~~l~~-~gi~i~~~~~~~~--------------~~~~~iRi~~~~~--~~~i~~~~~al~~ 350 (350)
T cd00609 305 LERLLLE-AGVVVRPGSAFGE--------------GGEGFVRLSFATP--EEELEEALERLAE 350 (350)
T ss_pred HHHHHHh-CCEEEeccccccc--------------CCCCeEEEEeeCC--HHHHHHHHHHhhC
Confidence 6777754 6999875543311 2457999999986 9999999999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=228.32 Aligned_cols=352 Identities=17% Similarity=0.136 Sum_probs=255.7
Q ss_pred CCCCHHHHHhhhccC-CCCeEEeccCCCCC----CcHHHHHHHHHHHHHHhcC-Cchh-hhhhhhHHHHHHHHHHHhHhC
Q 012991 22 RCISEAEIRDEFSHH-QHGVARINNGSFGS----CPKSVLADQQKWQLKFLQQ-PDDF-YFNSLRKGILESRAAVKDLIN 94 (452)
Q Consensus 22 ~~~~~~~ir~~~~~~-~~~~~~l~~~~~~~----~p~~v~e~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~la~~~~ 94 (452)
..++..++.+++..+ ....+|++..+.|. .|..|.+++.+....+..+ |-.. .+.+..+.+.+.+..+++++|
T Consensus 83 ~~~sE~e~~~~~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG 162 (993)
T PLN02414 83 EGLTESQMLEHMKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTG 162 (993)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 356777777776532 23445777777666 8887778887765543222 1111 124455668899999999999
Q ss_pred CCCCCcEEEecChhHHHHHHHHHhhcccccCCCC--CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 95 ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH--RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 95 ~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~--~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
++ ++++.++.++|++.+.++.++. ++ ++++|++++.+|+++...|..++++.|++++.++. ++.
T Consensus 163 ~~-~anaSL~d~aTAaaea~~~a~~-------~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~----~~~-- 228 (993)
T PLN02414 163 LP-MSNASLLDEGTAAAEAMAMCNN-------ILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADE----KDF-- 228 (993)
T ss_pred CC-hhhEeecCChHHHHHHHHHHHh-------cccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecc----hhh--
Confidence 96 8999999999999999988773 34 34789999999999999999889999999999943 110
Q ss_pred HHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc-cccccCccEEEEcC
Q 012991 173 IINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI-DVKEIGADFYVSNL 251 (452)
Q Consensus 173 ~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-~~~~~~~d~~~~s~ 251 (452)
+ .. +..+..+++ +..|.+|.+.|+++|+++||++|+ ++++ +++..+...+ +...+|+|++++++
T Consensus 229 --~----~~------~~~v~~vlv-q~P~~~G~v~dv~~I~~~ah~~Ga-L~iV-aad~lal~~l~~pge~GADi~vgsg 293 (993)
T PLN02414 229 --D----YS------SGDVCGVLV-QYPATDGEVLDYAEFVKNAHANGV-KVVM-ATDLLALTMLKPPGEWGADIVVGSA 293 (993)
T ss_pred --c----cc------cCceEEEEE-ecCCCCeEEcCHHHHHHHHHHcCC-EEEE-EECHHHhcCCCCHhhccCcEEEECC
Confidence 1 11 234444544 444569999999999999999999 8999 8888887777 47888999999999
Q ss_pred cccC-----cCCCCcEEEEEecCccccCCCCC-ceec--cC-CCCc-------c--cccccccccCccccccHHHHHHHH
Q 012991 252 HKWF-----FCPPSVAFLYCRKSILSSDMHHP-VVSH--EF-GNGL-------P--IESAWIGTRDYSAQLVIPSAVTFV 313 (452)
Q Consensus 252 ~K~l-----~g~~G~G~l~~~~~~~~~~l~~~-~~~~--~~-~~~~-------~--~~~~~~~~~~~~~~~~~~~al~~~ 313 (452)
|||+ +||+ +|+++++++..+. +++ ...+ +. |... . ..+...+|.++....++.+++..+
T Consensus 294 qKwg~P~G~GGP~-aGflavr~~~~r~--~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~ 370 (993)
T PLN02414 294 QRFGVPMGYGGPH-AAFLATSQEYKRL--MPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAM 370 (993)
T ss_pred CccccCCCCCCCC-eeEEEECHHHHhh--CCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHH
Confidence 9985 3333 8999999988664 442 3222 10 1100 0 113457888988777777777544
Q ss_pred HH---hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee
Q 012991 314 SR---FEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI 390 (452)
Q Consensus 314 ~~---~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~ 390 (452)
.. ...|++++.+++..+++++.+.|.+. |+++..++. ...+.|.++ +..++.+.|.++ ||.++.
T Consensus 371 y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~~~~~~--f~~vt~~~~---------~~~~v~~~L~~~-gI~l~~ 437 (993)
T PLN02414 371 YAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-GFQVQSLPF--FDTVKVKCS---------DADAIADAAAKV-GINLRV 437 (993)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHhhc-CCccCCCCC--cCeEEEecC---------CHHHHHHHHHHC-CCeeEE
Confidence 21 01399999999999999999999774 788766532 456667664 347899999775 997753
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 391 HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
.. .+.+|+|++.++|++||++++++|..
T Consensus 438 ~~--------------------~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 438 VD--------------------ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred ec--------------------CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 21 35799999999999999999999974
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=218.51 Aligned_cols=351 Identities=15% Similarity=0.122 Sum_probs=224.1
Q ss_pred CCCCeEEeccCCC---C-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecC
Q 012991 36 HQHGVARINNGSF---G-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDN 106 (452)
Q Consensus 36 ~~~~~~~l~~~~~---~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g 106 (452)
.+..+++++.|.+ + ..|..+.+++.+.... + ..+.|....+..++|+++++++ |.+ ++++|++|+|
T Consensus 30 ~g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~----~-~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G 104 (433)
T PRK06855 30 LGVKITWENIGDPIAKGEKIPDWMKEIVAELVMD----D-KSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNG 104 (433)
T ss_pred ccccccccccCCCcccCCCCCHHHHHHHHHHhhc----C-CCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCc
Confidence 4567889987776 2 6777788888776532 1 2234555566788888888887 322 3689999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
+++++.+++. + +.+||.|++++|.|+...... ....|.+++.+++. .++...+ +++|++.++.
T Consensus 105 ~~~al~~~~~-l--------~~~Gd~Vlv~~P~Y~~~~~~~---~~~~g~~~v~v~~~--~~~~~~~d~~~l~~~~~~-- 168 (433)
T PRK06855 105 LGDAIAKIYG-L--------LRREARVIGPSPAYSTHSSAE---AAHAGYPPVTYRLD--PENNWYPDLDDLENKVKY-- 168 (433)
T ss_pred HHHHHHHHHH-h--------cCCCCeEEEeCCCCchHHHHH---HHhcCCeEEEEecc--cccCCCCCHHHHHHHHhc--
Confidence 9999998875 4 488999999999998743221 12347888888542 1122223 8999998853
Q ss_pred cCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----ccccccc---CccEEEEcCcccC
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEI---GADFYVSNLHKWF 255 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~---~~d~~~~s~~K~l 255 (452)
.++++++++++|+||||.+++. ++|+++|++||+ ++|.|++++.-.. ...+... +..+++.|++|.
T Consensus 169 --~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~-~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~- 244 (433)
T PRK06855 169 --NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDL-FIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKE- 244 (433)
T ss_pred --CCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccc-
Confidence 2568999999999999999985 467888999999 7999999864321 1111111 234788899996
Q ss_pred cCCCC--cEEEEEec----CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh--hcCHHHHHHHH
Q 012991 256 FCPPS--VAFLYCRK----SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF--EGGIDGIMQRN 327 (452)
Q Consensus 256 ~g~~G--~G~l~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~g~~~~~~~~ 327 (452)
++.+| +|++++.+ ..+.. +...... .... ...++...+.++. .++.+. +.-+++.++.+
T Consensus 245 ~~~pGlRiG~ii~p~~~~~~~~~~-~~~~~~~--------~~~~-~~~~~~~~Q~a~~---~~l~~~~~~~~~~~~~~~~ 311 (433)
T PRK06855 245 LPWPGSRCGWIEVYNADKDEVFKK-YINSILN--------AKMI-EVCSTTLPQMAIP---RIMSHPEYKNYLKERNKRY 311 (433)
T ss_pred cCCCcceEEEEEEeCCchhhHHHH-HHHHHHH--------hhcc-ccCCChHHHHHHH---HhhcCCcHHHHHHHHHHHH
Confidence 66566 88888732 11111 0000000 0000 0122233333333 333220 01255667777
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc-------cCC--------------hhhHHHHHHHHhhhcce
Q 012991 328 HEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR-------VMG--------------EDDALRLRGHLRVRFGV 386 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--------------~~~~~~l~~~L~~~~gI 386 (452)
+++++.+.+.|.+++++.+..|.+ +.++|+.+|+... ..+ ..+..+++..|.++.||
T Consensus 312 ~~r~~~~~~~L~~~~~~~~~~p~g--g~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV 389 (433)
T PRK06855 312 EKRSNIAYEKLKDVPGLKVNRTNG--AFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGI 389 (433)
T ss_pred HHHHHHHHHHHhcCCCeeccCCCe--eEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCE
Confidence 888888889887766666555544 7889998874210 000 01244566555556799
Q ss_pred EeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 387 EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.++..+. .....+|||++. .+.++++..++.|++++++
T Consensus 390 ~v~PG~~F~---------------~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 390 CVVPLSSFC---------------TELNGFRVTLLE-RDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred EEecCCcCC---------------CCCCceEEEECC-CcHHHHHHHHHHHHHHHHH
Confidence 987765552 122469999986 3689999999999998864
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=218.99 Aligned_cols=312 Identities=16% Similarity=0.179 Sum_probs=208.3
Q ss_pred hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHH
Q 012991 73 FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT 152 (452)
Q Consensus 73 ~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~ 152 (452)
.|++...+..+++++++++++|++ +. +++++|+.|+.+++. + +++||+|+++++.|++.+..+..+++
T Consensus 47 ~y~r~~~p~~~~le~~lA~l~g~~--~~-v~~~sG~~ai~~~l~-~--------l~~Gd~Vlv~~~~y~~~~~~~~~~~~ 114 (390)
T PRK08064 47 DYSRSGNPTREALEDIIAELEGGT--KG-FAFASGMAAISTAFL-L--------LSKGDHVLISEDVYGGTYRMITEVLS 114 (390)
T ss_pred cccCCCChhHHHHHHHHHHHhCCC--Ce-EEECCHHHHHHHHHH-H--------hCCCCEEEEccCccchHHHHHHHHHH
Confidence 355566677899999999999985 44 555777788887775 3 48899999999999988888877678
Q ss_pred hcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccccc
Q 012991 153 RAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAM 232 (452)
Q Consensus 153 ~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~ 232 (452)
+.|++++.++. ++ ++++++++ ++++++|++++++||+|.+.|+++|.++|+++|+ ++++|++++.
T Consensus 115 ~~G~~v~~v~~----~d----~~~l~~~l------~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~-~vvvD~a~~~ 179 (390)
T PRK08064 115 RFGIEHTFVDM----TN----LEEVAQNI------KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGC-LTFVDNTFLT 179 (390)
T ss_pred HcCCEEEEECC----CC----HHHHHHhc------CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCC-EEEEECCCCc
Confidence 88999999943 22 67888888 5789999999999999999999999999999999 8999999887
Q ss_pred CCccccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
+...... .+++|+++.|+||+++|+.| .|++++++ ++.+. + .+... .+ |.... +.- ...+
T Consensus 180 ~~~~~~~-~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~-l-~~~~~-~~-----------g~~~~-~~~-a~l~ 242 (390)
T PRK08064 180 PLLQKPL-DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQK-L-YFLQN-SF-----------GAVLG-VQD-CWLV 242 (390)
T ss_pred ccccCch-hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHH-H-HHHHH-hc-----------CCCCC-HHH-HHHH
Confidence 6543222 45799999999999888776 47777764 44443 1 11110 00 11110 100 1111
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc--------------ccccceEEEEcCCccccCChhhHH
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPP--------------EICAAMVMVGLPSRLRVMGEDDAL 374 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
++-++ .+....++..+++..+.+.|++.+.+ ++..|. ...++++.|.+. +..+..
T Consensus 243 ~~gl~----tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~------~~~~~~ 312 (390)
T PRK08064 243 LRGLK----TLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ------SEEAVR 312 (390)
T ss_pred HcccC----cHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC------CHHHHH
Confidence 11111 23345666778888888889887654 232221 135779999885 222344
Q ss_pred HHHHHHhhhcceEeeecccC-----CCCCCCCCCCCCCC--CCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 375 RLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGARDK--DGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.+.+.|. -+.+.++.+... +....+|.....++ .+..++.+|+|++.+++++.|+.+.++|+++
T Consensus 313 ~f~~~l~-l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 313 QFVSHVK-LPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred HHHHhCC-cceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 4444441 122244443111 11112333322221 1345789999999998888899999999874
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=219.58 Aligned_cols=342 Identities=15% Similarity=0.111 Sum_probs=218.6
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh------CCCCCCcEEEecChhH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI------NADDVGEISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i~~t~g~t~ 109 (452)
+..++.|+.+.+. ..|+.+.+++.+.+...... ...+.|....+..++|+++++++ +++ +++|++|+|+++
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~-~~~I~it~Ga~~ 110 (409)
T PRK07590 33 EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTA-ETFRGYGPEQGYDFLREKIAENDYQARGCDIS-ADEIFISDGAKC 110 (409)
T ss_pred CCceEEecCcCCCCCCCHHHHHHHHHHHhccccc-CCccCCCCCCCCHHHHHHHHHHHHHhcCCcCC-hhhEEECCCHHH
Confidence 4678999888766 45666888888776543111 11223445566788888888875 564 789999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE-----------EEEEeCCCCCCChHHH-HHHH
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS-----------VVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~-----------v~~~~~~~~~~~~~~~-~~~l 177 (452)
++.++.. + +.+||+|++.+|+|+.....+. ..|.+ ++.+++ +.++.+ .+
T Consensus 111 al~~l~~-~--------~~~gd~V~v~~P~Y~~~~~~~~----~~g~~~~~~~~~~~~~~~~v~~----~~~~~~~~d-- 171 (409)
T PRK07590 111 DTGNILD-I--------FGPDNTIAVTDPVYPVYVDTNV----MAGRTGEANEDGRYSGIVYLPC----TAENNFVPE-- 171 (409)
T ss_pred HHHHHHH-h--------cCCCCEEEEeCCCCcchHHHHH----HcCCcccccccccccceeEeec----ccccCCccc--
Confidence 9988643 3 4799999999999998765554 35765 777744 211112 11
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCC----cccccccc----CccE
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGS----IKIDVKEI----GADF 246 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~~----~~d~ 246 (452)
+. .+++++|++++|+||||.+++.+ +|+++|++|++ ++|+|++++.-. .+..+... +..+
T Consensus 172 ---~~-----~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~-~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi 242 (409)
T PRK07590 172 ---LP-----EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGS-LILFDAAYEAFISDPSLPHSIYEIEGARECAI 242 (409)
T ss_pred ---Cc-----ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCe-EEEEEccchhhccCCCCCcchhhCCCcccceE
Confidence 11 25789999999999999999855 67788999999 799999986321 11111111 1236
Q ss_pred EEEcCcccCcCCCC--cEEEEEecCccccCCCC-CceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHH
Q 012991 247 YVSNLHKWFFCPPS--VAFLYCRKSILSSDMHH-PVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDG 322 (452)
Q Consensus 247 ~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~ 322 (452)
++.|++|. +|.+| +|+++++++++.. +.. .......... ..........+...+.++..++.. ... -+++
T Consensus 243 ~~~SfSK~-~~~pGlRiG~~i~~~~li~~-~~~~~~~~~~~~~~-~~~~~~~~~~s~~~q~a~~~~l~~~~~~---~~~~ 316 (409)
T PRK07590 243 EFRSFSKT-AGFTGTRCAYTVVPKELKGK-TSDGEGVSLNSLWN-RRQSTKFNGVSYIVQRAAEAVYSPEGKA---QIKE 316 (409)
T ss_pred EEecCccc-cCCcCceeEEEEcCHHHhhh-ccccchhhhHHHHH-HHHhhcccCcCHHHHHHHHHHhcCCcHH---HHHH
Confidence 67899996 66566 8999988877762 100 0000000000 000000011222233333223321 011 2455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
+++.++++++.+.+.|... ++.+..+.. ++++|+.++ ...+..++.+.|.++.||.+.++..+..
T Consensus 317 ~~~~~~~~r~~l~~~L~~~-~~~~~~~~g--~~f~wi~~~------~~~~~~~~~~~l~~~~gv~v~pg~~f~~------ 381 (409)
T PRK07590 317 LIDYYMENAKIIREGLESA-GFEVYGGVN--APYIWVKTP------DGMSSWDFFDKLLQEANVVGTPGSGFGP------ 381 (409)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCceecCCc--ceEEEEECC------CCCCHHHHHHHHHHHCCEEEeChhHhCC------
Confidence 6777788888899999886 666554433 778999987 3456678888876667999877655422
Q ss_pred CCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 403 AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
...+++||++. .+.++++..++.|+++
T Consensus 382 --------~~~~~iRi~~~--~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 382 --------SGEGYFRLSAF--GSRENVLEAMERIKKA 408 (409)
T ss_pred --------CCCCEEEEEcc--CCHHHHHHHHHHHHhh
Confidence 23469999964 3788999999998765
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=216.45 Aligned_cols=338 Identities=18% Similarity=0.204 Sum_probs=227.2
Q ss_pred CeEEeccCCCCCC--cHHHHHHHHHHHH-HHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCCC-cEEEecChh
Q 012991 39 GVARINNGSFGSC--PKSVLADQQKWQL-KFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDVG-EISLVDNAT 108 (452)
Q Consensus 39 ~~~~l~~~~~~~~--p~~v~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~-~i~~t~g~t 108 (452)
.+|+|+.+..... ...+.+++++... .. .......|....+..+++++++++++ .+ .+ ++++++|+.
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~~i~~~~G~~ 78 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAA--TSSSFLGYPPPQGYPELREAIADFLGRRYGVPVD-PEANILVTSGAQ 78 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHH--HHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTT-GGEGEEEESHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhh--cccccccCCCchhhHHHHHHHHHHhhhccCcccc-cceEEEEecccc
Confidence 4788887777643 2223333333322 11 11222345666788999999999999 54 56 899999988
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+++..+...+. ..+++.|++++|.|+.....+ +..|.++..+++.. .+++.+ ++.|++.+++.+..
T Consensus 79 ~~~~~~~~~~~-------~~~~~~vlv~~P~y~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~ 145 (363)
T PF00155_consen 79 AALFLLLRLLK-------INPGDTVLVPDPCYPSYIEAA----RLLGAEVIPVPLDS--ENDFHLDPEALEEALDELPSK 145 (363)
T ss_dssp HHHHHHHHHHH-------SSTTSEEEEEESSSTHHHHHH----HHTTSEEEEEEEEE--TTTTEETHHHHHHHHHTSHTT
T ss_pred cchhhhhhccc-------ccccccceecCCccccccccc----cccCceeeeccccc--ccccccccccccccccccccc
Confidence 88888777651 468999999999999876665 44699999986531 123333 89999999754332
Q ss_pred CCceEEEEEeccCCCCcccccHHHHHHH---HHHcCCCEEEEecccccCCcc--------ccccccCccEEEEcCcccCc
Q 012991 188 GKMIRLAIIDHITSMPCVVIPVRKLVKI---CRDEGVDQVFVDAAHAMGSIK--------IDVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l~~i~~l---~~~~~~~~~ivD~a~~~g~~~--------~~~~~~~~d~~~~s~~K~l~ 256 (452)
+.++++|++++++||||..++.+++.++ |++||+ ++|+|++++..... .........+++.|++|. +
T Consensus 146 ~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~-~ 223 (363)
T PF00155_consen 146 GPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNI-IIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKS-F 223 (363)
T ss_dssp TETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTS-EEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTT-T
T ss_pred ccccceeeecccccccccccccccccchhhhhccccc-ceeeeeceeccccCCCccCcccccccccccceeeeecccc-c
Confidence 2267999999999999999987665555 999999 79999998764433 111111224788899995 6
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|.+| +|++++++++++. + .... . .+..+......+..++........-.++.+++++++++++
T Consensus 224 g~~GlRvG~i~~~~~~~~~-l-~~~~-----------~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 288 (363)
T PF00155_consen 224 GLPGLRVGYIVAPPELIER-L-RRFQ-----------R--SGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLL 288 (363)
T ss_dssp TSGGGTEEEEEEEHHHHHH-H-HHHH-----------H--HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhh-h-hhcc-----------c--cccccchhhHHHHHhhhcccccccccccchhhHHHHHHHH
Confidence 7676 8999998877765 1 1110 0 0111222222222233222210013567788888999999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|.+. ++.+..++. +.++|..++ ..+..++.+.|.++.||.+.++..+. . ++
T Consensus 289 ~~~L~~~-~~~~~~~~~--~~~~~~~~~-------~~~~~~l~~~L~~~~gi~v~pg~~~~---------------~-~~ 342 (363)
T PF00155_consen 289 REALEEI-GITVLPPEA--GFFLWVRLD-------PNDAEELAQELLEEYGILVRPGSYFG---------------V-PG 342 (363)
T ss_dssp HHHHHHT-TSEEEHHSB--SSEEEEEES-------HHHHHHHHHHHHHHHTEEEEEGGGGT---------------S-TT
T ss_pred HHHHHHh-hhheeeccC--ccEEEEEcc-------cchHHHHHHHHHHhCCEEEEecCCCC---------------C-CC
Confidence 9999887 777665553 667777664 33678899999876699998776652 2 67
Q ss_pred eEEecccccCCHHHHHHHHHHH
Q 012991 415 YARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l 436 (452)
++|+++ ...+.+++++++++|
T Consensus 343 ~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 343 YIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp EEEEEG-GCSCHHHHHHHHHHH
T ss_pred EEEEEe-ccCCHHHHHHHHhhC
Confidence 999999 446999999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=211.20 Aligned_cols=341 Identities=13% Similarity=0.089 Sum_probs=212.5
Q ss_pred CCHHHHHhhhcc---C-CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHH----hHhC
Q 012991 24 ISEAEIRDEFSH---H-QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVK----DLIN 94 (452)
Q Consensus 24 ~~~~~ir~~~~~---~-~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la----~~~~ 94 (452)
..+..+|+.+.. . +..++.|+.+.+. +.|+.+.+++.+..... . .|....+..++|++++ +.+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~-----~--~Y~~~~G~~~lr~aia~~l~~~~g 78 (374)
T PRK05839 6 YPFEKLRELLKEITPNKEYKGLDLTIGEPQFETPKFIQDALKNNAHLL-----N--KYPKSAGEESLREAQRGFFKRRFK 78 (374)
T ss_pred chHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHhhcc-----C--CCCCCCCCHHHHHHHHHHHHHHhC
Confidence 345666666542 2 5589999987766 45666777776643221 1 1222233445555554 4446
Q ss_pred CC-CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 95 AD-DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 95 ~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
.+ ++++|++|+|+++++..++.++. ..++|+.|+++.|.|+.....+ ...|++++.++.+. ++...
T Consensus 79 ~~~~~~~I~it~G~~~al~~~~~~~~------~~~~gd~vlv~~P~y~~~~~~~----~~~g~~v~~v~~~~--~~~~~- 145 (374)
T PRK05839 79 IELKENELIPTFGTREVLFNFPQFVL------FDKQNPTIAYPNPFYQIYEGAA----IASRAKVLLMPLTK--ENDFT- 145 (374)
T ss_pred CCCCcceEEEecCcHHHHHHHHHHHh------cCCCCCEEEECCCCchhhHHHH----HhcCCEEEEeeccc--ccCCc-
Confidence 32 37899999999999998888652 1157899999999998876555 44699999996521 11111
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc--c----ccc-----
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI--K----IDV----- 239 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~--~----~~~----- 239 (452)
++..+..+ +++++|++++|+||||.+++. ++|+++|+++|+ ++|+|++++.-.. + ...
T Consensus 146 ~d~~~~~~-------~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~-~ii~DE~Y~~~~~~~~~~s~~~~~~~~~ 217 (374)
T PRK05839 146 PSLNEKEL-------QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDF-ILINDECYSEIYENTPPPSLLEASILVG 217 (374)
T ss_pred CCcchhhh-------ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCC-EEEeccchhhcccCCCCCCHhhhhcccC
Confidence 22222222 358999999999999999985 467778899999 7999999764211 0 010
Q ss_pred -cccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh
Q 012991 240 -KEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF 316 (452)
Q Consensus 240 -~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 316 (452)
...+--+++.|++|. ++.+| +|+++.++++++. + .... .......+...+.++..++ ..
T Consensus 218 ~~~~~~vi~~~SfSK~-~~~~GlRiG~ii~~~~~~~~-~-~~~~-----------~~~~~~~~~~~q~~~~~~l---~~- 279 (374)
T PRK05839 218 NESFKNVLVINSISKR-SSAPGLRSGFIAGDASILKK-Y-KAYR-----------TYLGCASPLPLQKAAAVAW---LD- 279 (374)
T ss_pred ccccCcEEEEeccccc-cCCccceeEEEecCHHHHHH-H-HHHH-----------hhcCCCCChHHHHHHHHHh---cc-
Confidence 111234778899995 66666 8998887776664 1 1110 0000111222222222222 11
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 317 EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 317 ~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
..-.+.++++++++++.+.+.| ++. .|++ +.++|++++ +..++.+.|.+++||.+.++..+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l----~~~--~p~g--g~fi~~~~~---------~~~~~~~~l~~~~gi~v~pg~~f~~ 342 (374)
T PRK05839 280 DEHAEFFRNIYAKNLKLAREIL----GIT--IPPA--TFYVWLPVD---------NDEEFTKKLYQNEGIKVLPGSFLGR 342 (374)
T ss_pred chHHHHHHHHHHHHHHHHHHhc----CCC--CCCe--eEEEEEeCC---------ChHHHHHHHHHHCCEEEeCchhhCC
Confidence 1134556666666666655543 433 2333 788898875 2357888886656999987654422
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
. ...++++|+|+.. +.++++..+++|+++++
T Consensus 343 ~------------~~~~~~iRis~~~--~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 343 N------------GIGKGYVRIALVY--DTPKLEKALEIIKTYLE 373 (374)
T ss_pred C------------CCCCCeEEEEecC--CHHHHHHHHHHHHHHhh
Confidence 1 1236899999974 68999999999998874
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=211.76 Aligned_cols=317 Identities=18% Similarity=0.187 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEE
Q 012991 79 RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSV 158 (452)
Q Consensus 79 ~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v 158 (452)
.....++++.+++++|.+ ++++++|||+|+..++.++ ..++|++|+++.++|.++..++. ..|.++
T Consensus 17 ~~~~~~~~~~la~~~~~~---~~~~~~sgt~al~~~l~~l-------~~~~gd~vl~~~~~~~~~~~~~~----~~g~~~ 82 (352)
T cd00616 17 GPKVREFEKAFAEYLGVK---YAVAVSSGTAALHLALRAL-------GIGPGDEVIVPSFTFVATANAIL----LLGATP 82 (352)
T ss_pred CHHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHc-------CCCCCCEEEeCCcchHHHHHHHH----HcCCeE
Confidence 346889999999999974 6888999999999999876 24789999999999999877664 459999
Q ss_pred EEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc
Q 012991 159 VEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI 237 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~ 237 (452)
+.++++. +...+ ++++++.+ ++++++|++++ ++|...|+++|.++|+++|+ ++|+|++|+.|....
T Consensus 83 ~~~~~~~---~~~~~d~~~l~~~i------~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i-~li~D~a~~~g~~~~ 149 (352)
T cd00616 83 VFVDIDP---DTYNIDPELIEAAI------TPRTKAIIPVH---LYGNPADMDAIMAIAKRHGL-PVIEDAAQALGATYK 149 (352)
T ss_pred EEEecCC---CcCCcCHHHHHHhc------CcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCC-eEEEECCCCCCCeEC
Confidence 9996521 13334 78899888 56889998875 58999999999999999999 799999999887643
Q ss_pred ccc-ccCccEEEEcCc--ccCcCCCCcEEEEEec-CccccCCCCCceeccCCCCcc---cccccccccCccccccHHHHH
Q 012991 238 DVK-EIGADFYVSNLH--KWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLP---IESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 238 ~~~-~~~~d~~~~s~~--K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~al 310 (452)
+.. ....|+.++|++ |++.++.| |+++.++ ++.+. + ..... .+.... ......+... ....+.+++
T Consensus 150 ~~~~~~~~d~~~~S~~~~K~~~~~~g-g~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~aa~ 222 (352)
T cd00616 150 GRKVGTFGDAGAFSFHPTKNLTTGEG-GAVVTNDEELAER-A-RLLRN--HGRDRDRFKYEHEILGYNY--RLSEIQAAI 222 (352)
T ss_pred CEEcccCcceeEEcCCCCCCCcccCc-eEEEECCHHHHHH-H-HHHHH--cCCCCCCCccccceeeecc--CcCHHHHHH
Confidence 211 112577888765 98755554 7777764 44443 1 11100 110000 0000001111 112223333
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc---cccceEEEEcCCccccCChhhHHHHHHHHhhhcceE
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE---ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVE 387 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~ 387 (452)
...... +++.+.++.+++.+++.+.|.+++++++..+.. ....++.|.+++. .+.+..++.+.|.++ ||.
T Consensus 223 ~~~~l~--~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~L~~~-gI~ 295 (352)
T cd00616 223 GLAQLE--KLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE----AGESRDELIEALKEA-GIE 295 (352)
T ss_pred HHHHHH--hhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc----CCCCHHHHHHHHHHC-CCC
Confidence 332221 567788888999999999999888888765432 2345666766410 145778999999765 998
Q ss_pred eeecccCCCCCCCCCCC--CCCCC------CCccceEEecccccCCHHHHHHHHHHHH
Q 012991 388 VPIHYQAPKDDGQPQAG--ARDKD------GIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 388 v~~~~~~~~~~~~~~~~--~~~~~------~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
++..+.+..... .... ..... ....+.+|++++.++|.+||++++++|+
T Consensus 296 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 296 TRVHYPPLHHQP-PYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred eeeecCccccCH-hhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 765444321100 0000 00000 0113689999999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=219.52 Aligned_cols=348 Identities=16% Similarity=0.105 Sum_probs=225.4
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCchhh--hhhhhHHHHH-HHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDDFY--FNSLRKGILE-SRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~~~--~~~~~~~~~~-~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
+..+.|+.+. ++.|+.|.+++...+.... +++++.+ +....+..++ +++.+++++|++ ...|+++ +||+|+.
T Consensus 25 ~~~~~l~~~~-n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~-~~~i~~~-sgt~al~ 101 (416)
T PRK00011 25 EEHIELIASE-NFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAE-YANVQPH-SGSQANA 101 (416)
T ss_pred hcCeeeeccc-CcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceeeecC-CchHHHH
Confidence 5677887654 4477889999877653221 2222211 1122333444 778999999996 4455554 5688999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH-HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY-VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~-a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.++.++ +++||+|+++.++|.++...+... ....|.+++.++++ . +.+.+ ++++++.++ ..+
T Consensus 102 ~~l~~l--------~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~-~~~~~d~~~l~~~i~-----~~~ 165 (416)
T PRK00011 102 AVYFAL--------LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVD--E-ETGLIDYDEVEKLAL-----EHK 165 (416)
T ss_pred HHHHHh--------cCCCCEEEEeccccCCccccccccccccceeeEeecCcC--c-ccCCcCHHHHHHHHH-----hcC
Confidence 988876 589999999999997653222110 12335677776431 1 22345 899999985 247
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
+++|++++. .+|...|+++|.++|+++|+ ++|+|++|+.|.. +.++. ++|++++|+||++.|+.| |+++
T Consensus 166 ~k~v~~~~~--~~~~~~~~~~I~~la~~~~~-~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~g-g~i~ 239 (416)
T PRK00011 166 PKLIIAGAS--AYSRPIDFKRFREIADEVGA-YLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPRG-GLIL 239 (416)
T ss_pred CCEEEECCC--cCCCccCHHHHHHHHHHcCC-EEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCCc-eEEE
Confidence 888888654 35677899999999999999 8999999987654 22333 679999999999878886 7777
Q ss_pred Ee-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 266 CR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 266 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++ +++.+. +.... .. ...+++....+.++..++..... .+.+...++.+++++++++.|.+. |+
T Consensus 240 ~~~~~~~~~-l~~~~-~~----------~~~~~~~~~~~aa~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~ 304 (416)
T PRK00011 240 TNDEELAKK-INSAV-FP----------GIQGGPLMHVIAAKAVAFKEALE--PEFKEYAQQVVKNAKALAEALAER-GF 304 (416)
T ss_pred eCCHHHHHH-HHHHh-Cc----------cccCCccHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 75 455543 11110 00 00123333344444444433332 256888899999999999999886 77
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc--
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV-- 422 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-- 422 (452)
++.. ....++++++.+++ .+.+..++.+.|.+ .||.+..++.+...+. ...++.+|++...
T Consensus 305 ~~~~-~~~~~~~~~i~~~~-----~~~~~~~~~~~L~~-~GI~v~~~~~p~~~~~----------~~~~~~~Ri~~~~~~ 367 (416)
T PRK00011 305 RVVS-GGTDNHLVLVDLRS-----KGLTGKEAEAALEE-ANITVNKNAVPFDPRS----------PFVTSGIRIGTPAIT 367 (416)
T ss_pred eeee-cCCCCeEEEEeCcc-----cCCCHHHHHHHHHH-cCcEEccCcCCCCCCC----------CCCCCceEecCHHHh
Confidence 6543 22225788887742 13356778888865 5999965433211000 1224579997633
Q ss_pred --cCCHHHHHHHHHHHHHHHhc
Q 012991 423 --YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 423 --~~t~~di~~l~~~l~~~~~~ 442 (452)
..|.+|+++++++|++++..
T Consensus 368 ~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 368 TRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred hcCcCHHHHHHHHHHHHHHHhc
Confidence 34699999999999999876
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=213.19 Aligned_cols=362 Identities=14% Similarity=0.103 Sum_probs=239.1
Q ss_pred HHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPDD-FYF--NSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 27 ~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
+.|++|... ++..+.|- ++-...++.|++++...+..-+. .|.. +|. ...+++...+.++..++||++ ..-
T Consensus 39 ~~~~~e~~r-q~~~l~Li-asEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~--~an 114 (493)
T PRK13580 39 EAIRQELAD-QRSSLKLI-ASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAE--HAY 114 (493)
T ss_pred HHHHHHHHH-HhcCceEe-cccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCC--ccc
Confidence 445555543 35566665 44567777799998777665332 2222 222 344667777899999999996 333
Q ss_pred EEecChhHHHHHHHHHhhccc----------------------ccCC-CCCCCEEEEeCCcchhHHHHHHHHHHhcC--c
Q 012991 102 SLVDNATTAAAIVLQQIGRGF----------------------TEGR-FHRNDTVLMLHCAFQAVKKSIQAYVTRAG--G 156 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~----------------------~~~~-~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g--~ 156 (452)
+-.-||+.|+..++.++.... ...+ .-.||+|+..+..+.++...- ......| .
T Consensus 115 vqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg-~~~n~~~~~~ 193 (493)
T PRK13580 115 VQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG-FRPNISGKMF 193 (493)
T ss_pred ccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC-cccchhhhee
Confidence 556678889999999884210 0000 001789997755443321100 0011123 3
Q ss_pred EEEEEeCCCCCC-ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC
Q 012991 157 SVVEVQLPFPLA-SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS 234 (452)
Q Consensus 157 ~v~~~~~~~~~~-~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~ 234 (452)
+++.. +.+ +.+.+ ++++++.+ .++++.|++++.+|. |...|+++|.++|++||+ ++++|++|++|.
T Consensus 194 ~~~~y----~vd~~~g~iD~d~l~~~~------~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA-~L~VD~AH~~Gl 261 (493)
T PRK13580 194 HQRSY----GVDPDTGLLDYDEIAALA------REFKPLILVAGYSAY-PRRVNFAKLREIADEVGA-VLMVDMAHFAGL 261 (493)
T ss_pred eeEec----ccCcccCccCHHHHHHHH------hhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCC-EEEEECchhhce
Confidence 33334 333 33556 99999999 466778888888887 558899999999999999 899999999998
Q ss_pred cccccc------ccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC--CCceeccCCCCcccccccccccCccccccH
Q 012991 235 IKIDVK------EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH--HPVVSHEFGNGLPIESAWIGTRDYSAQLVI 306 (452)
Q Consensus 235 ~~~~~~------~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (452)
++.+.. ..++|++++|+||+++||.| |++++++++++. +. .|+ ..|++....+.+.
T Consensus 262 igg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~l~~~-L~~a~P~--------------i~gg~l~p~iAA~ 325 (493)
T PRK13580 262 VAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKEYADA-VDKGCPL--------------VLGGPLPHVMAAK 325 (493)
T ss_pred eccccchhhcCCCCCCcEEEeCChhhccCCCe-EEEEecHHHHHH-HhhCCCc--------------ccCCCccHHHHHH
Confidence 864431 12689999999999889997 999999887765 21 111 1134444455555
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcce
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGV 386 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 386 (452)
..++..+.+. +++.+++++.+++++|.+.|.+. |+.+.... ..++++.+.+.+ .+.+...+.+.|.+ .||
T Consensus 326 avAl~e~~~~--ef~~y~~~l~~Na~~La~~L~~~-G~~vv~gg-TdshIV~V~lg~-----~~~~g~~a~~~L~e-~GI 395 (493)
T PRK13580 326 AVALAEARTP--EFQKYAQQVVDNARALAEGFLKR-GARLVTGG-TDNHLVLIDVTS-----FGLTGRQAESALLD-AGI 395 (493)
T ss_pred HHHHHHHhCc--cHHHHHHHHHHHHHHHHHHHHhc-CCCccCCC-CCCCEEEEEeCC-----HHHHHHHHHHHHHH-CCe
Confidence 5566655532 45778999999999999999887 88775322 226788887752 12234567778866 599
Q ss_pred EeeecccCCCC-CCCCCCCCCCCCCCccceEEecccccC----CHHHHHHHHHHHHHHHhc
Q 012991 387 EVPIHYQAPKD-DGQPQAGARDKDGIITGYARISHQVYN----TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 387 ~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~iRis~~~~~----t~~di~~l~~~l~~~~~~ 442 (452)
.+.....|... | ......|||++...+ +++|++++++.|.++++.
T Consensus 396 ~vn~i~~Ptvp~g-----------~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 396 VTNRNSIPSDPNG-----------AWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred EEccccCCCCCCC-----------CCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 99654444221 0 112568999998744 589999999999998864
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-25 Score=214.02 Aligned_cols=315 Identities=15% Similarity=0.142 Sum_probs=216.7
Q ss_pred CeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 39 GVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 39 ~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
.+++|+.+.++. .|+.+.+++.+.......++ ..+..++|+.++++++++ +++|++|+|+++++..++.+
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~--------~~g~~~lr~~ia~~~~~~-~~~I~~~~G~~~~l~~~~~~ 93 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAGVNRYP--------DMGAVELRAALAEHLGVP-PEHVAVGCGSVALCQQLVQA 93 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHhcCcCC--------CCcHHHHHHHHHHHhCcC-HHHEEECCCHHHHHHHHHHH
Confidence 578888886653 56679999987765332221 345789999999999985 78999999999999988876
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +++||+|+++.+.|...... ++..|.+++.+++ +.++.+ ++++++.+ .+++++|++
T Consensus 94 ~--------~~~gd~Vli~~p~y~~~~~~----~~~~g~~~~~v~~----~~~~~~~~~~l~~~~------~~~~~~v~l 151 (352)
T PRK03321 94 T--------AGPGDEVIFAWRSFEAYPIL----VQVAGATPVQVPL----TPDHTHDLDAMAAAI------TDRTRLIFV 151 (352)
T ss_pred h--------cCCCCEEEeCCCCHHHHHHH----HHHcCCEEEEccC----CCCCCCCHHHHHHhh------ccCCCEEEE
Confidence 5 58999999999998764333 4557999998854 322334 88898888 468899999
Q ss_pred eccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCc------cccc-cccCccEEEEcCcccCcCCCC--cEEEE
Q 012991 197 DHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSI------KIDV-KEIGADFYVSNLHKWFFCPPS--VAFLY 265 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~------~~~~-~~~~~d~~~~s~~K~l~g~~G--~G~l~ 265 (452)
++++||||.++|.++|.++|++ +++ ++|+|+++..... .+.. ...+-.+++.|++|. +|.+| +|+++
T Consensus 152 ~~p~NPtG~~~~~~~l~~l~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~-~g~~GlRiG~~v 229 (352)
T PRK03321 152 CNPNNPTGTVVTPAELARFLDAVPADV-LVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKA-YGLAGLRVGYAV 229 (352)
T ss_pred eCCCCCcCCCcCHHHHHHHHHhCCCCe-EEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHH-hhhHHHhhhhhc
Confidence 9999999999999999999987 589 7999999753221 1111 111224667799996 66666 89999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++++. + .... ...+.+...+.++.+++..... .....++..+.++.+.+.|.+. ++.
T Consensus 230 ~~~~~~~~-~-~~~~-------------~~~~~s~~~q~~a~~~l~~~~~----~~~~~~~~~~~r~~~~~~L~~~-~~~ 289 (352)
T PRK03321 230 GHPEVIAA-L-RKVA-------------VPFSVNSLAQAAAIASLAAEDE----LLERVDAVVAERDRVRAALRAA-GWT 289 (352)
T ss_pred CCHHHHHH-H-HHhc-------------CCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 88777765 2 1110 0012233333333333322121 2223334445566788888775 655
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+.. +. ++++|+.++ .+..++.+.|.+ +||.+... ..++|||+++ +
T Consensus 290 ~~~-~~--g~~i~i~l~--------~~~~~~~~~l~~-~gI~v~~~--------------------~~~~iRi~~~---~ 334 (352)
T PRK03321 290 VPP-SQ--ANFVWLPLG--------ERTADFAAAAAE-AGVVVRPF--------------------AGEGVRVTIG---A 334 (352)
T ss_pred cCC-CC--CCEEEEeCC--------CCHHHHHHHHHH-CCEEEEcc--------------------CCCcEEEeeC---C
Confidence 432 22 678888774 245688899865 69998641 1246999986 8
Q ss_pred HHHHHHHHHHHHHHHh
Q 012991 426 LEDYEKFRDAVILLVE 441 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~ 441 (452)
.+++++++++|++++.
T Consensus 335 ~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 335 PEENDAFLRAARAWRA 350 (352)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998753
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=214.93 Aligned_cols=323 Identities=18% Similarity=0.172 Sum_probs=233.8
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
++..+.........+....+.+...+.....++..+ .......+++-..++++++.++...-.||+|||+|+.+++.+
T Consensus 61 ~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~--p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~a 138 (460)
T COG0076 61 HPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDES--PAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLA 138 (460)
T ss_pred CcceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccC--hhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHH
Confidence 445555555566677777888877776554444443 356778899999999999997455679999999999999998
Q ss_pred hhcccccCCCC-----C-CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 118 IGRGFTEGRFH-----R-NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 118 l~~~~~~~~~~-----~-g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
..+.+.+.... . ..+|+++...|.|+.++...+ |++.+.+++. + . +..+ +++++++|+ ++
T Consensus 139 ar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~l----G~~~~~v~~~-~-~-~~~id~~~l~~~i~------~~ 205 (460)
T COG0076 139 ARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL----GLGLRRVPTV-P-T-DYRIDVDALEEAID------EN 205 (460)
T ss_pred HHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHh----CCCceeEEec-c-C-ccccCHHHHHHHHH------hh
Confidence 86655311111 1 127999999999988887665 9999999653 1 1 5566 999999995 44
Q ss_pred eEE--EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc-------cccccCccEEEEcCcccCcCCCCc
Q 012991 191 IRL--AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI-------DVKEIGADFYVSNLHKWFFCPPSV 261 (452)
Q Consensus 191 ~~l--v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-------~~~~~~~d~~~~s~~K~l~g~~G~ 261 (452)
+.. |+.+.+++++|.+.|+++|+++|+++++ ++|||+|.+....++ ++..-++|.++.++|||++.|.|+
T Consensus 206 t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i-~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~ 284 (460)
T COG0076 206 TIGGVVVGTAGTTDTGSIDDIEELADIAEEYGI-WLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGC 284 (460)
T ss_pred ccCceEEEEecCCCCCccCCHHHHHHHHHHcCC-cEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCc
Confidence 444 9999999999999999999999999999 599999988766543 333337899999999999999999
Q ss_pred EEEEEecC-ccccCCCCCceeccCCCC-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 262 AFLYCRKS-ILSSDMHHPVVSHEFGNG-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 262 G~l~~~~~-~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
|+++.+++ .+...+. +...|..+ ...+....++.+....+++...+..+.. +|+.++.++..++++++.+.|.
T Consensus 285 G~il~rd~e~l~~~~~---~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~--eGy~~l~~~~~~~a~~la~~l~ 359 (460)
T COG0076 285 GVVLFRDEEALRRILI---FADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGR--EGYRKLLDRTLELARYLAEELE 359 (460)
T ss_pred eEEEEECHHHhhhhhh---cccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCH--hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 3433111 11112211 2223333456666566666666776653 3899999999999999999999
Q ss_pred HHcCCCcCCCcccccceEEEEcCCccccCChhh-HHHHHHHHhhhcceEeee
Q 012991 340 NAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDD-ALRLRGHLRVRFGVEVPI 390 (452)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~gI~v~~ 390 (452)
+.+.+++.+++. .++++|+.++ ..+ ..+..+.+.+ .|..++.
T Consensus 360 ~~~~~e~~~~p~--l~~V~fr~~~------~~~~~~~~~~~~~~-~gw~v~~ 402 (460)
T COG0076 360 KLGDFELVNEPE--LPIVAFRLKD------DEDTLADLSERLDR-RGWQVPA 402 (460)
T ss_pred hCCCcEeecCCc--cceEEEEcCC------cccchhchHHHHHh-cCceeec
Confidence 986689888775 8899999863 222 3455566654 4887753
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=213.92 Aligned_cols=321 Identities=14% Similarity=0.093 Sum_probs=216.7
Q ss_pred CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh------CCCCCCcEEEecChhHHH
Q 012991 39 GVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI------NADDVGEISLVDNATTAA 111 (452)
Q Consensus 39 ~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i~~t~g~t~a~ 111 (452)
..+.|+.+... +.|+.+.+++.+.+..... ....|. .....++|+++++++ +++ +++|++|+|+++++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~---~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~-~~~I~it~G~~~~l 101 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAA---GLNRYP-DRDAVALRADLAAYLTAQTGVGLT-VENVWAANGSNEIL 101 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhh---hhccCC-CCchHHHHHHHHHHhhhhccCCCC-hhhEEECCCHHHHH
Confidence 35778776654 5777799999887643211 111121 234677888888888 343 78999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++ +++||.|+++.|.|..+...+ ...|.++..++. +++..+ ++.++++++ .++
T Consensus 102 ~~~~~~~--------~~~gd~v~v~~P~y~~~~~~~----~~~g~~~~~~~~----~~~~~~d~~~l~~~~~-----~~~ 160 (368)
T PRK03317 102 QQLLQAF--------GGPGRTALGFVPSYSMHPIIA----RGTHTEWVEGPR----AADFTLDVDAAVAAIA-----EHR 160 (368)
T ss_pred HHHHHHh--------cCCCCEEEEeCCChHHHHHHH----HhcCCeeEEccc----CCCCCCCHHHHHHHHh-----ccC
Confidence 9999987 589999999999998765443 456888877743 333334 889998885 257
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc---c--ccc-cccCccEEEEcCcccCcCCCC--cE
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI---K--IDV-KEIGADFYVSNLHKWFFCPPS--VA 262 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~---~--~~~-~~~~~d~~~~s~~K~l~g~~G--~G 262 (452)
+++|++++|+||||.+++.+++.++++.+++ ++|+|++++.... + ... ...+-.+++.|++|. +|.+| +|
T Consensus 161 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~-~g~~GlRiG 238 (368)
T PRK03317 161 PDVVFLTSPNNPTGTALPLDDVEAILDAAPG-IVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKA-FAFAGGRLG 238 (368)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHCCc-eEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhh-hccchhhhh
Confidence 8899999999999999999999999999999 7999999874211 1 111 111223567799996 55555 79
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
+++++++++.. +. ... . ....+...+.+..++++... .+...++++.+.++.+.+.|.+.
T Consensus 239 ~~~~~~~~~~~-l~-~~~-----------~--~~~~s~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~- 298 (368)
T PRK03317 239 YLAAAPAVVDA-LR-LVR-----------L--PYHLSAVTQAAARAALRHAD----ELLASVAALRAERDRVVAWLREL- 298 (368)
T ss_pred hhhCCHHHHHH-HH-hcC-----------C--CCCCCHHHHHHHHHHhhCHH----HHHHHHHHHHHHHHHHHHHHHHC-
Confidence 99888877765 21 110 0 01122223333334443322 23334455677777888888775
Q ss_pred CCCcCCCcccccceEEE-EcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 343 GTSLGSPPEICAAMVMV-GLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
++.+..+. ++++++ .++ +...+.+.|.+ +||.+... ..++++|++++
T Consensus 299 g~~~~~~~---~~~~~~~~~~---------~~~~~~~~l~~-~Gv~v~~~-------------------~~~~~iRi~~~ 346 (368)
T PRK03317 299 GLRVAPSD---ANFVLFGRFA---------DRHAVWQGLLD-RGVLIRDV-------------------GIPGWLRVTIG 346 (368)
T ss_pred CCEeCCCC---CcEEEEeccC---------CHHHHHHHHHH-CCEEEEeC-------------------CCCCeEEEecC
Confidence 66655443 334433 332 45678888876 59998632 12469999987
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+++++++++|+++++.
T Consensus 347 ---~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 347 ---TPEENDAFLAALAEVLAT 364 (368)
T ss_pred ---CHHHHHHHHHHHHHHHHH
Confidence 788999999999998753
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=214.66 Aligned_cols=385 Identities=14% Similarity=0.117 Sum_probs=247.9
Q ss_pred cccccCCCCCCCCCHHHHHhhhccCCCCeEEeccCCC--CC-CcH---HHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Q 012991 12 HHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSF--GS-CPK---SVLADQQKWQLKFLQQPDDFYFNSLRKGILES 85 (452)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ir~~~~~~~~~~~~l~~~~~--~~-~p~---~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (452)
+++.|+-.|+..++.++..+.....+.+++.|..+.+ .. +|. .+.+++.+.+.. +.. .|.....+.++
T Consensus 10 ~~r~~~v~~~~~~~~~~~~~~l~~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~----g~~--~Y~~~~g~~~L 83 (460)
T PRK13238 10 PFRIKMVEPIRLTTREERERALAEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMR----GDE--AYAGSRSYYRL 83 (460)
T ss_pred ceeeceeccccccCHHHHHHHHHHcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHh----CCc--ccCCCCCHHHH
Confidence 3456666677778888877777767889999999887 33 322 355555555431 222 24445668999
Q ss_pred HHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCC
Q 012991 86 RAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPF 165 (452)
Q Consensus 86 ~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~ 165 (452)
+++++++++.+ .+++|+|||+|+.+++.++ +++|| |+++++.|.+....+ ...|.+++.++++.
T Consensus 84 reaia~~~~~~---~vv~t~ggt~A~~~~~~al--------l~pGD-Vii~~p~~~~~~~~i----~~~G~~~v~v~~~~ 147 (460)
T PRK13238 84 EDAVKDIFGYP---YTIPTHQGRAAEQILFPVL--------IKKGD-VVPSNYHFDTTRAHI----ELNGATAVDLVIDE 147 (460)
T ss_pred HHHHHHHhCCC---cEEECCCHHHHHHHHHHHh--------CCCCC-EEccCCcccchHHHH----HHcCCEEEEEeccc
Confidence 99999999884 7899999999999999876 68999 888888777654333 44699999997632
Q ss_pred CC-----CC-hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCc-cccc---HHHHHHHHHHcCCCEEEEecccccC-
Q 012991 166 PL-----AS-EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPC-VVIP---VRKLVKICRDEGVDQVFVDAAHAMG- 233 (452)
Q Consensus 166 ~~-----~~-~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG-~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g- 233 (452)
.. +. .+.+ +++|++.++... .+++++|++++++|++| .+++ +++|.++|++||+ ++|+|+++...
T Consensus 148 ~~~~~~~~~f~g~id~e~Le~~i~~~~--~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi-~li~Daa~~~e~ 224 (460)
T PRK13238 148 ALDTGSRHPFKGNFDLEKLEALIEEVG--AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGI-PVVIDAARFAEN 224 (460)
T ss_pred cccccccccccCCcCHHHHHHHHhhcC--CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEECcchhhh
Confidence 10 11 1235 899999995320 14799999999999998 7776 5689999999999 79999988542
Q ss_pred ----------Cccccccc------cCccEEEEcCcccCcCCCCcEEEEEec-CccccCCCCCceeccCCCCccccccccc
Q 012991 234 ----------SIKIDVKE------IGADFYVSNLHKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIG 296 (452)
Q Consensus 234 ----------~~~~~~~~------~~~d~~~~s~~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (452)
....++.. -..|++++|++|.++++.| |+++.++ ++... + ........| ....+
T Consensus 225 a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~-~-~~~~~~~~g------~~t~~ 295 (460)
T PRK13238 225 AYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTE-C-RTLCILYEG------FPTYG 295 (460)
T ss_pred hhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHH-h-hhcccccCC------ccccc
Confidence 11222211 1379999999998788887 8888884 55554 2 111100000 00112
Q ss_pred ccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc--cCChhhHH
Q 012991 297 TRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR--VMGEDDAL 374 (452)
Q Consensus 297 ~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 374 (452)
..+...+.++..+++.... +...+...+.+++|.+.|.+. |+.+..|.+ ++++++.+..... ...+....
T Consensus 296 g~~~~~~~Ala~~l~e~~~-----~~~~~~~~~~~~~l~~~L~~~-G~~~~~p~G--g~~v~~d~~~~~~~~~~~~~~~~ 367 (460)
T PRK13238 296 GLAGRDMEALAVGLYEGMD-----EDYLAYRIGQVEYLGEGLEEA-GVPIQTPAG--GHAVFVDAGKFLPHIPAEQFPAQ 367 (460)
T ss_pred CcHHHHHHHHHhhHHHhhC-----hHHHHHHHHHHHHHHHHHHHC-CCCeEccCC--ceEEEEEchhcCCCCCCCCCchH
Confidence 2222233444444433221 122333344678999999886 898887766 5666666532100 01123457
Q ss_pred HHHHHHhhhcceEeeecc-cCCCCCCCCCCCCCCCCCCccceEEecccc-cCCHHHHHHHHHHHHHHHhc
Q 012991 375 RLRGHLRVRFGVEVPIHY-QAPKDDGQPQAGARDKDGIITGYARISHQV-YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~~di~~l~~~l~~~~~~ 442 (452)
+++.+|.++.||.+..+. .....+ ...... .......+|++++- .-|.++++.+.++|+++.+.
T Consensus 368 ~~a~~L~~e~GV~~~~~~~f~~~~~--~~~~~~--~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 368 ALACELYLEAGIRGVEIGSLLLGRD--PKTGEQ--LPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred HHHHHHHHHcCeeeecccceecccC--CCCccc--cCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 789888888899984322 211110 000000 01235799999973 23889999999999999864
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=210.93 Aligned_cols=325 Identities=15% Similarity=0.138 Sum_probs=213.8
Q ss_pred CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC--------CCCCCcEEEecChhH
Q 012991 39 GVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN--------ADDVGEISLVDNATT 109 (452)
Q Consensus 39 ~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~i~~t~g~t~ 109 (452)
.++.|+.+.+. ++|+.+.+++.+.+.... .... | ...+..++|++++++++ ++ +++|++|+|+++
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~-~~~I~it~Ga~~ 102 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGI--ESNR--Y-PDGGHEALKQAIAEYVNESAAGSSQIT-PANISVGNGSDE 102 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcc--cccC--C-CCCchHHHHHHHHHHhCccccccCCCC-HHHEEEcCChHH
Confidence 46778877766 567778898887654310 0111 2 12457889999999987 54 789999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCC-EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRND-TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~-~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
++..++.++ +.+|+ +|++++|.|......+ +..|.+++.++++ .+...+ +++|++++++..
T Consensus 103 al~~~~~~~--------~~~g~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~~---~~~~~~d~~~l~~~~~~~~-- 165 (374)
T PRK02610 103 LIRSLLIAT--------CLGGEGSILVAEPTFSMYGILA----QTLGIPVVRVGRD---PETFEIDLAAAQSAIEQTQ-- 165 (374)
T ss_pred HHHHHHHHH--------cCCCCCeEEEcCCChHHHHHHH----HHcCCEEEEecCC---cccCCCCHHHHHHHHHhhc--
Confidence 998877765 35664 8999999998765554 5569999998542 111234 888988885210
Q ss_pred CCceEEEEEeccCCCCcccccHHHHHHHHH-HcCCCEEEEecccccCCcc--c-cccccCccEEEEcCcccCcCCCC--c
Q 012991 188 GKMIRLAIIDHITSMPCVVIPVRKLVKICR-DEGVDQVFVDAAHAMGSIK--I-DVKEIGADFYVSNLHKWFFCPPS--V 261 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~-~~~~~~~ivD~a~~~g~~~--~-~~~~~~~d~~~~s~~K~l~g~~G--~ 261 (452)
.+++++|++++|+||||.+++.+++.++.+ .+++ ++|+|+++...... . .+....--+++.|++|. +|.+| +
T Consensus 166 ~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~-~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~-~g~~GlRi 243 (374)
T PRK02610 166 NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDI-LVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKA-FRLAAHRV 243 (374)
T ss_pred CCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCc-EEEEeccccccCccchHHHHhcCCCEEEEEecchh-ccCcccce
Confidence 158999999999999999999877766553 2489 79999998532111 1 11111223677899996 66666 8
Q ss_pred EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 262 AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 262 G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
|+++.++++++. + .... . ....+...+.+...+++....+ .+.+++ ..+.++.+.+.|.++
T Consensus 244 G~~v~~~~l~~~-l-~~~~---~----------~~~~~~~~q~a~~~~l~~~~~~---~~~~~~-~~~~r~~l~~~L~~~ 304 (374)
T PRK02610 244 GYAIGHPELIAV-L-EKVR---L----------PYNLPSFSQLAAQLALEHRQEL---LAAIPE-ILQERDRLYQALQEL 304 (374)
T ss_pred eeeecCHHHHHH-H-HHhc---C----------CCCCCHHHHHHHHHHhcCHHHH---HHHHHH-HHHHHHHHHHHHHhC
Confidence 999888777765 1 1110 0 0112223333333343322221 233333 344466777888776
Q ss_pred cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 342 WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
+++.+. |++ ++++|+.++ .+.+..++.+.|.+ +||.++. ..+++|||++
T Consensus 305 ~~~~~~-p~~--g~f~~~~l~------~~~~~~~~~~~l~~-~gi~v~~---------------------~~~~lRls~~ 353 (374)
T PRK02610 305 PQLRVW-PSA--ANFLYLRLS------QDAALAALHQALKA-QGTLVRH---------------------TGGGLRITIG 353 (374)
T ss_pred CCcEeC-CCc--ceEEEEeCC------CCCCHHHHHHHHHH-CCEEEEe---------------------CCCeEEEeCC
Confidence 666543 433 778999887 34567788888865 5999852 1368999987
Q ss_pred ccCCHHHHHHHHHHHHHHHh
Q 012991 422 VYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~ 441 (452)
+.+++++++++|++++.
T Consensus 354 ---~~~~~~~~l~~l~~~l~ 370 (374)
T PRK02610 354 ---TPEENQRTLERLQAALT 370 (374)
T ss_pred ---CHHHHHHHHHHHHHHHh
Confidence 56789999999988764
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=205.54 Aligned_cols=345 Identities=10% Similarity=0.072 Sum_probs=244.0
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCC-----chhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe-cChhHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQP-----DDFYFNSLRKGILESRAAVKDLINADDVGEISLV-DNATTAAAI 113 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t-~g~t~a~~~ 113 (452)
.++|. +++...|++|++.+++-+.++...+ .++.+..+.++++++++.+.++++.|+..+|+|. .|||.++..
T Consensus 5 ~~nF~-aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea 83 (364)
T PRK12462 5 QLNFS-GGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSM 83 (364)
T ss_pred cceec-CCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHH
Confidence 45666 4467778789999988777664432 2345678899999999999999999744566655 569999999
Q ss_pred HHHHhhcccccCCCCCCCEEE-EeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH--HHHHHHHHhccccCCCc
Q 012991 114 VLQQIGRGFTEGRFHRNDTVL-MLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI--INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl-~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~--~~~l~~~i~~~~~~~~~ 190 (452)
+..++ +.+|++++ +....+.| .-|...|++.| .+..+...++ .+.+.+ .+++ .+ .++
T Consensus 84 ~~~Nl--------l~~g~~~~~~~~tG~fg--~r~~~ea~~~g-~v~~~~~~~~-~~~~~~p~~~~~--~~------~~d 143 (364)
T PRK12462 84 IPMNF--------SRPGAAAPEYVTTGYWS--RKAIGEASRVA-AMRVVWDGAA-SGYRTLPSLAEL--DW------DAR 143 (364)
T ss_pred HHHHc--------CCCCCcEEEEEeCCHHH--HHHHHHHHhcC-CceEecCcCC-CCCCcCCCHHHh--cc------CCC
Confidence 99987 57888655 44344333 23344477777 5555421111 111222 3333 12 456
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
.+.|.+++.+|.+|+.+| ++.+.+++ ++++|++++++..++|++++ |++.++.+|.| ||+|++++++++++
T Consensus 144 ~~~v~~t~NETstGv~~~-----~~~~~~~~-llvvD~sS~~~s~pid~~~~--dvi~agsQKnl-gP~Gltvvivs~~a 214 (364)
T PRK12462 144 APFRHYVSNETVEGLQFP-----DAAGLPDS-PLIADMSSDFMSRPFDVEAY--GMVYAHAQKNL-GPAGVTVAIIRRAL 214 (364)
T ss_pred CcEEEEccCCCCceEecC-----cccccCCC-eEEEEcCchhhCCCCChHHc--cEEEeeccccC-CCCceEEEEECHHH
Confidence 788999999999999997 33334689 89999999999999999977 99999999986 59999999999999
Q ss_pred cccCCCCCceeccCCCCc-ccccccccccCccccccHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHcCCC-c-
Q 012991 271 LSSDMHHPVVSHEFGNGL-PIESAWIGTRDYSAQLVIPSAVTFVSRFE-GGIDGIMQRNHEQALKMARMLANAWGTS-L- 346 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~- 346 (452)
+++ . .......+.... ..+.....||+...++++..+++|+.+ + +|++++.++.+++++.+++.+.+..++. .
T Consensus 215 l~~-~-~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~-e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~ 291 (364)
T PRK12462 215 LER-V-PDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRD-EIGGVHAMRDINARKAAMLYATLDALNEVIDCH 291 (364)
T ss_pred Hhh-c-cccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 876 1 111100000000 001123459999999999999999986 4 5999999999999999999999986553 2
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
..+......-+.|.++ +.....++.+...+ .|+..-.+|.. .|.+|+|+....+.
T Consensus 292 ~~~~~RS~mnv~f~~~------~~~l~~~f~~~a~~-~gl~~lkGhr~------------------vgg~Ras~yna~~~ 346 (364)
T PRK12462 292 AHRAARSTMNVAFRFR------QPRLDTLFKEQSTE-AGFCGLSGHRS------------------IGGIRASLYNAVSE 346 (364)
T ss_pred CChhhcCcceEEEEcC------CHHHHHHHHHHHHH-CCCccccCCcc------------------cCceEEEcCCCCCH
Confidence 2222232344667775 23334567777755 49987656553 35699999988999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+++++|++.|++..++
T Consensus 347 e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 347 QAVSRLCAFLKDFAIR 362 (364)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998754
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=206.27 Aligned_cols=341 Identities=12% Similarity=0.103 Sum_probs=235.3
Q ss_pred CCeEEeccCCCC--CCcHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 38 HGVARINNGSFG--SCPKSVLADQQKWQLKFLQQPDD-FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 38 ~~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
+.+++|..+.+- ...+.+.++..+.+..+...... ....+.....+++++.+|+++|.+ ..++.++|..|+..+
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e---~all~sSGy~AN~~~ 178 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKE---DCLVCPTGFAANMAA 178 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCC---cEEEECChHHHHHHH
Confidence 356777666543 34455888888888776433222 122445567789999999999985 667777788888888
Q ss_pred HHHhhccc------ccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc-CcEEEEEeCCCCCCChHHHHHHHHHHHhccccC
Q 012991 115 LQQIGRGF------TEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA-GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKD 187 (452)
Q Consensus 115 ~~~l~~~~------~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 187 (452)
+.+++... ......+++.|+++...|.|+..+.+. ++.. +.++..+ +.++ .+.|++.+++.
T Consensus 179 i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~l-s~~~~~a~~~~f----~HND----~~~Le~~L~~~--- 246 (476)
T PLN02955 179 MVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRL-AERQGNVEVFVY----RHCD----MYHLNSLLSSC--- 246 (476)
T ss_pred HHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHh-ccccCCceEEEe----CCCC----HHHHHHHHHhC---
Confidence 88763110 000124567888999999999888765 3332 4677777 5555 68888888654
Q ss_pred CCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---------cccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~l~g~ 258 (452)
..+.++|+++...++.|.+.|+++|.++|++||+ ++++|++|+.|.... ++. .+.|+++.|++|. +|.
T Consensus 247 ~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga-~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA-~G~ 323 (476)
T PLN02955 247 KMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGF-LLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKA-AGC 323 (476)
T ss_pred CCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCc-EEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccc-hhc
Confidence 3456789999999999999999999999999999 899999999876532 121 2578999999997 677
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
.| |++++++++++. +. .. +. ...+.+..+.....+..++++.+.. + +..+++++++.+++++.
T Consensus 324 ~G-Gfi~gs~~~~~~-l~-~~-----~~----~~ifStalpp~~aaa~laal~l~~~---~-~~~r~~L~~n~~~fr~~- 386 (476)
T PLN02955 324 HG-GFIACSKKWKQL-IQ-SR-----GR----SFIFSTAIPVPMAAAAYAAVVVARK---E-KWRRKAIWERVKEFKAL- 386 (476)
T ss_pred cC-ceeecHHHHHHH-HH-Hh-----CC----CCeecccccHHHHHHHHHHHHHHhc---C-HHHHHHHHHHHHHHHHh-
Confidence 76 888888876654 21 11 00 0111122222333445556666653 2 34567788888888763
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.|+.+. ++++.+.+. +......+.+.|.++ ||++.....|.. ......+|+
T Consensus 387 ---~G~~~~------sPI~pI~ig------~~~~a~~~~~~L~~~-Gi~v~~i~yPtV-------------P~g~~rLRi 437 (476)
T PLN02955 387 ---SGVDIS------SPIISLVVG------NQEKALKASRYLLKS-GFHVMAIRPPTV-------------PPNSCRLRV 437 (476)
T ss_pred ---cCCCCC------CCEEEEEeC------CHHHHHHHHHHHHHC-CCEEEEECCCCC-------------CCCCceEEE
Confidence 255431 557766664 455677889999875 999976655533 133458999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++..+|.+||++++++|+++.+.
T Consensus 438 ~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 438 TLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998753
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=207.32 Aligned_cols=319 Identities=16% Similarity=0.168 Sum_probs=216.0
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISL 103 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~ 103 (452)
.++..+.+++-..++..++|..+..+..++ +.+.. .. ....+.... ..++|+.++++++.+ ++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~-------~~~~y~~~~-~~~lr~~la~~~~~~-~~~i~~ 69 (330)
T TIGR01140 3 GNLRRAAARYGIPPEDWLDFSTGINPLGPP-VPPIP---AS-------AWARYPDPE-YDELRAAAAAYYGLP-AASVLP 69 (330)
T ss_pred ccHHHHHHHcCCChhheeEccccCCCCCCC-hhhcc---hH-------HHhhCCCcc-HHHHHHHHHHHhCCC-hhhEEE
Confidence 456677777766667889998887554433 22211 11 111222233 488999999999985 789999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhc
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEK 183 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~ 183 (452)
|+|+++++.+++.++ .+| .|++.+|+|.+....+ +..|.+++.+ + + ++.+++.++
T Consensus 70 t~G~~~~i~~~~~~l---------~~g-~vl~~~p~y~~~~~~~----~~~g~~~~~~----~-d-----~~~l~~~~~- 124 (330)
T TIGR01140 70 VNGAQEAIYLLPRLL---------APG-RVLVLAPTYSEYARAW----RAAGHEVVEL----P-D-----LDRLPAALE- 124 (330)
T ss_pred CCCHHHHHHHHHHHh---------CCC-eEEEeCCCcHHHHHHH----HHcCCEEEEe----C-C-----HHHHHhhcc-
Confidence 999999999876643 566 7999999998865554 5569999888 3 1 577777762
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcccccc----ccCccEEEEcCcccCc
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVK----EIGADFYVSNLHKWFF 256 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~----~~~~d~~~~s~~K~l~ 256 (452)
++++|++++|+||||.++| +++|+++|+++|+ ++|+|+++.......++. ..+.++++.|++|+ +
T Consensus 125 ------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~ 196 (330)
T TIGR01140 125 ------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGG-WLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKF-F 196 (330)
T ss_pred ------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCC-EEEEECcccccCCccchhhHhccCCCEEEEEecchh-h
Confidence 4668999999999999999 5567788899999 799999986433221211 12456888999996 6
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|++| +|+++++++++.. + ..... ..+.+.. ++.++..++... +-.+..+++++.+++.+
T Consensus 197 g~~G~R~G~i~~~~~~~~~-l-~~~~~-------------~~~~s~~---~q~~~~~~l~~~-~~~~~~~~~~~~~~~~l 257 (330)
T TIGR01140 197 GLAGLRLGFVVAHPALLAR-L-REALG-------------PWTVNGP---ARAAGRAALADT-AWQAATRARLAAERARL 257 (330)
T ss_pred cCchhhhhheeCCHHHHHH-H-HhcCC-------------CCCchHH---HHHHHHHHHhch-HHHHHHHHHHHHHHHHH
Confidence 6566 6999998877665 1 11110 0112222 233334444431 12356778888999999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|++++.+++. +. .+.++|+.++ +..++++.|.+ +||.+.++..+.+ ...+
T Consensus 258 ~~~L~~~~~~~~~-~~--~~~f~~~~~~---------~~~~l~~~l~~-~gi~v~pg~~f~~--------------~~~~ 310 (330)
T TIGR01140 258 AALLARLGGLEVV-GG--TALFLLVRTP---------DAAALHEALAR-RGILIRDFDNFPG--------------LDPR 310 (330)
T ss_pred HHHHHhCCCceEC-CC--CCeEEEEEcC---------CHHHHHHHHHH-CCEEEEECCCCCC--------------CCCC
Confidence 9999887545443 22 2678888765 34688999976 5999987766532 2356
Q ss_pred eEEecccccCCHHHHHHHHHHHH
Q 012991 415 YARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~ 437 (452)
++|++++. ..++ ++++++|+
T Consensus 311 ~iRi~~~~--~~~~-~~~~~~l~ 330 (330)
T TIGR01140 311 YLRFALPT--DEEN-DRLEEALA 330 (330)
T ss_pred EEEEEecC--HHHH-HHHHHhhC
Confidence 99999984 3455 88888763
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-24 Score=210.09 Aligned_cols=333 Identities=16% Similarity=0.148 Sum_probs=222.6
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCCCcEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDVGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~i~~t~g~t~a 110 (452)
..++.|+.+.+. +.|+.+.+++.+........ ...|....+..++|+.++++++ ++ +++|++|+|++++
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t~G~~~a 108 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEEEDPG---LHGYMPNAGYPEVREAIAESLNRRFGTPLT-ADHIVMTCGAAGA 108 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcC---cccCCCCCCCHHHHHHHHHHHHHHhCCCCC-cCcEEEeCChHHH
Confidence 567888887765 45788888888776432111 1224344567788888888875 33 6899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh-HHH-HHHHHHHHhccccCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE-EEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~-~~~-~~~l~~~i~~~~~~~ 188 (452)
+..++.++ +.+||+|++++|.|...... ++..|++++.++++ ++ +.+ ++++++.+ .
T Consensus 109 l~~~~~~l--------~~~gd~Vli~~p~~~~~~~~----~~~~g~~v~~v~~~----~~~~~~d~~~l~~~~------~ 166 (394)
T PRK06836 109 LNVALKAI--------LNPGDEVIVFAPYFVEYRFY----VDNHGGKLVVVPTD----TDTFQPDLDALEAAI------T 166 (394)
T ss_pred HHHHHHHh--------cCCCCEEEEcCCCCccHHHH----HHHcCCEEEEEecC----CccCcCCHHHHHhhc------C
Confidence 99999876 58899999999999875443 45679999999652 22 334 89999988 5
Q ss_pred CceEEEEEeccCCCCcccccH---HHHHHHHHH------cCCCEEEEecccccCCc-----cccccccCccEEEEcCccc
Q 012991 189 KMIRLAIIDHITSMPCVVIPV---RKLVKICRD------EGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~------~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~ 254 (452)
+++++|++++++||||.++|. ++|+++|++ ||+ ++|+|+++..-.. +.-....+-.+++.|++|.
T Consensus 167 ~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 245 (394)
T PRK06836 167 PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPI-YLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKS 245 (394)
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCe-EEEEeccccccccCCCCCCChHHccCcEEEEecchhh
Confidence 689999999999999999985 466777888 899 7999998753211 1101122346788899995
Q ss_pred CcCCCC--cEEEEEecCcccc-CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCRKSILSS-DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 255 l~g~~G--~G~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
+|.+| +|+++++++..+. .+...... . .. ..+... .+.....++...+.+ +. .++.+++.+
T Consensus 246 -~~~pGlRiG~~~~~~~~~~~~~~~~~~~~---~-----~~-~~~~~~-~~~~~q~~~~~~l~~---~~--~~~~~~~~r 309 (394)
T PRK06836 246 -LSLPGERIGYIAVNPEMEDADDLVAALVF---A-----NR-ILGFVN-APALMQRVVAKCLDA---TV--DVSIYKRNR 309 (394)
T ss_pred -ccCcceeeEEEecCHHHhhhHHHHHHHHH---H-----hh-cccccc-CCHHHHHHHHHHhCC---hH--HHHHHHHHH
Confidence 66555 8898887665331 00000000 0 00 000001 111112222223322 21 244566777
Q ss_pred HHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
+.+.+.|.+. |+.+..+.+ +.++|+.+| . .+..++++.|.+ +||.+.++..+ .
T Consensus 310 ~~l~~~L~~~-g~~~~~~~g--g~~~~~~~~------~-~~~~~~~~~l~~-~gv~v~~g~~f----------------~ 362 (394)
T PRK06836 310 DLLYDGLTEL-GFECVKPQG--AFYLFPKSP------E-EDDVAFCEKAKK-HNLLLVPGSGF----------------G 362 (394)
T ss_pred HHHHHHHHhC-CCEeecCCc--eEEEEEeCC------C-CCHHHHHHHHHh-CCEEEECchhc----------------C
Confidence 8888888876 666554443 677888776 2 356778888865 59999876554 1
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++||+++ .++++++..++.|+++++.
T Consensus 363 ~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~ 391 (394)
T PRK06836 363 CPGYFRLSYC--VDTETIERSLPAFEKLAKE 391 (394)
T ss_pred CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 2479999998 3789999999999999865
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=208.64 Aligned_cols=291 Identities=15% Similarity=0.087 Sum_probs=198.5
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 160 (452)
..++|+.++++++++ +++|++|+|+++++.+++.++ +.+| ++|++++|.|...... ++..|.+++.
T Consensus 61 ~~~lr~~ia~~~~~~-~~~I~~t~G~~~~l~~~~~~~--------~~~g~~~vlv~~p~y~~~~~~----~~~~g~~~~~ 127 (364)
T PRK04781 61 PPGLRSALAALYGCA-PEQLLIGRGSDEAIDLLVRAL--------CVPGRDAVLVTPPVFGMYAVC----ARLQNAPLVE 127 (364)
T ss_pred HHHHHHHHHHHhCcC-hHHEEEeCCHHHHHHHHHHHh--------cCCCCCeEEEcCCChHHHHHH----HHHcCCEEEE
Confidence 578999999999996 789999999999999999976 4677 7999999988654332 4557999999
Q ss_pred EeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCcc-
Q 012991 161 VQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSIK- 236 (452)
Q Consensus 161 ~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~~- 236 (452)
+++..+ ++...+ ++++++.+. .+++++|++++++||||.++|.+++.++++. +++ ++|+|+++......
T Consensus 128 v~~~~~-~~~~~~d~~~l~~~~~-----~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~-~iI~Deay~~f~~~~ 200 (364)
T PRK04781 128 VPLVDG-ADGFHADVPAIVAAAL-----ASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKA-LVVVDEAYGEFSDVP 200 (364)
T ss_pred EecCCC-ccCCCcCHHHHHHHHh-----ccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCc-EEEEeCcchhhcCCc
Confidence 965211 111123 566655443 4689999999999999999999988888765 378 79999997632211
Q ss_pred --cc-ccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 237 --ID-VKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 237 --~~-~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
.. ....+--+++.|++|. +|.+| +|+++.++++++. + ...... ...+... ...+..
T Consensus 201 ~~~~~~~~~~~vi~~~SfSK~-~gl~GlRvGy~v~~~~l~~~-l-~~~~~~-------------~~~~~~~---~~~a~~ 261 (364)
T PRK04781 201 SAVGLLARYDNLAVLRTLSKA-HALAAARIGSLIANAELIAV-L-RRCQAP-------------YPVPTPC---AALAEQ 261 (364)
T ss_pred chHHHHhhCCCEEEEecChhh-cccccceeeeeeCCHHHHHH-H-HhccCC-------------CCCCHHH---HHHHHH
Confidence 11 1112234778899995 77666 8999988887765 2 111000 1111112 222333
Q ss_pred HHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee
Q 012991 312 FVSRFE-GGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI 390 (452)
Q Consensus 312 ~~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~ 390 (452)
++.... .-.....+++++.++.+.+.|..++++....|+. ++++|+.++ +..++.+.|.+ .||.++.
T Consensus 262 ~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~--g~f~~~~~~---------~~~~~~~~l~~-~gI~v~~ 329 (364)
T PRK04781 262 ALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQ--GNFLLVRFD---------DAEAAFQALLA-AGVVVRD 329 (364)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCC--CcEEEEEcC---------CHHHHHHHHHH-CCeEEee
Confidence 333200 0123344456777888999998876654233444 788898875 34678888866 5999987
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 391 HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+..+. ..++++||+++ +.++.++++++|+++..
T Consensus 330 ~~~~~---------------~~~~~~Ris~~---~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 330 QRAAP---------------RLSDALRITLG---TPEQNDRVLAALQRTQA 362 (364)
T ss_pred CCCCC---------------CCCCeEEEeCC---CHHHHHHHHHHHHHHHh
Confidence 64331 22579999998 79999999999998754
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=208.68 Aligned_cols=345 Identities=13% Similarity=0.060 Sum_probs=237.7
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCC-cEEEecChhHHHHHHHHHhhc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG-EISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~i~~t~g~t~a~~~~~~~l~~ 120 (452)
+|..|+.-..|....+++++.. .+. ++.+..+.+++.++++.+.++++.++.. .+++++|||.+++.++.++.
T Consensus 6 ~f~~gp~~~~~~~~~~~~~~~~---~~~--~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~- 79 (374)
T TIGR01365 6 CFSSGPCAKRPGWSIEELKNAP---LGR--SHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSML- 79 (374)
T ss_pred CcCCCccCCCchhhHHHHhhhh---ccc--CcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcC-
Confidence 3444444445554555555422 122 2456788899999999999999985222 35668999999999999872
Q ss_pred ccccCCCCCCCEEEEeCCcchhHHHHHH-HHHHhcCc-EEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEe
Q 012991 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQ-AYVTRAGG-SVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 121 ~~~~~~~~~g~~Vl~~~~~~~s~~~~~~-~~a~~~g~-~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
-++|++|++.. .+...|. .+|++.|+ ++..+..+|.. .+ +++++. . +.|.++
T Consensus 80 ------~~~g~~vLv~g----~FG~r~~~eia~~~g~~~v~~l~~~~g~----~~~~~~ve~--------~---~~v~~v 134 (374)
T TIGR01365 80 ------GCRGVDVLAWE----SFGKGWVTDVTKQLKLPDVRVLEAEYGK----LPDLKKVDF--------K---NDVVFT 134 (374)
T ss_pred ------CCCCCeEEEEC----HHHHHHHHHHHHhcCCCCcEEEcCCCCC----CCCHHHcCC--------C---CCEEEe
Confidence 14788888753 3345555 66888999 47777553321 12 555541 1 126799
Q ss_pred ccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC-
Q 012991 198 HITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH- 276 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~- 276 (452)
|..++||+..|+++|.+.+ +++ +++||+++++|..+++++. +|++++|.+|+|.+|+|+++++++++.+++ ..
T Consensus 135 hnETSTGv~npv~~i~~~~--~~~-lliVDavSs~g~~~l~~d~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~-~~~ 208 (374)
T TIGR01365 135 WNGTTSGVRVPNGDFIPAD--REG-LTICDATSAAFAQDLDYHK--LDVVTFSWQKVLGGEGAHGMLILSPRAVAR-LES 208 (374)
T ss_pred cCCCchheecccccccccc--CCC-cEEEEccchhcCCCCChhH--CcEEEEechhccCCCCceEEEEECHHHHHH-Hhh
Confidence 9999999999997765332 489 8999999999999999984 899999999999999999999999888765 11
Q ss_pred -CCc------eeccCCCC---cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 277 -HPV------VSHEFGNG---LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 277 -~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
.++ +....... ......++.||+...++++..+++++.+ ++|+++..+|.+++++.+++++++++.+.+
T Consensus 209 ~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~-egGle~~~~Rh~~~a~~l~~~l~~lg~l~~ 287 (374)
T TIGR01365 209 YTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAES-IGGLKPLIARADDNLAVLEAFVAKNNWIHF 287 (374)
T ss_pred cCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 111 11000000 0011234567777777777777877775 358999999999999999999999833666
Q ss_pred CCC-cc-cccceEEEEcCCc-c---ccCChhh-HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 347 GSP-PE-ICAAMVMVGLPSR-L---RVMGEDD-ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 347 ~~~-~~-~~~~~~~~~~~~~-~---~~~~~~~-~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
... +. ....++.+.++.. . +...+++ ..++.+.|.++ ||.+..+... ..+..+||+
T Consensus 288 ~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~i~~G~~~----------------~~~~~fRIg 350 (374)
T TIGR01365 288 LAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKE-GVAYDIGSYR----------------DAPSGLRIW 350 (374)
T ss_pred CCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHC-CEEEeccccc----------------cCCCceEEe
Confidence 553 22 2234555666421 0 0001122 57899999775 9988544432 234789999
Q ss_pred ccccCCHHHHHHHHHHHHHHHh
Q 012991 420 HQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.....+.+|++.+++.|.-+..
T Consensus 351 ~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 351 CGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred cCCcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=210.80 Aligned_cols=310 Identities=15% Similarity=0.198 Sum_probs=205.6
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++.+++++|.+ .+++++||++|+..++.++ +++||+|+++++.|.+.+..+...+..
T Consensus 55 y~r~~~p~~~~le~~la~l~g~~---~~v~~ssG~~Ai~~al~al--------~~~Gd~Vi~~~~~y~~t~~~~~~~~~~ 123 (390)
T PRK08133 55 YSRFTNPTVTMFQERLAALEGAE---ACVATASGMAAILAVVMAL--------LQAGDHVVSSRSLFGSTVSLFEKIFAR 123 (390)
T ss_pred eECCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEccCcchhHHHHHHHHHHH
Confidence 34444667899999999999984 5788999999999998876 589999999999999988777655677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.+++ ++ .+++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++++|++++.+
T Consensus 124 ~G~~v~~vd~----~d----~~~l~~~i------~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi-~livD~t~~~~ 188 (390)
T PRK08133 124 FGIETTFVDL----TD----LDAWRAAV------RPNTKLFFLETPSNPLTELADIAALAEIAHAAGA-LLVVDNCFCTP 188 (390)
T ss_pred cCcEEEEECC----CC----HHHHHHhc------CcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 33 57788888 5789999999999999999999999999999999 79999998766
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--c-EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--V-AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~-G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
...... ..++|+++.|++|++ +++| . |+++.+++.+.+ + ..... ..+. ..+......++
T Consensus 189 ~~~~pl-~~g~Divv~S~sK~~-~g~g~~~GG~vv~~~~~~~~-~-~~~~~------------~~g~--~~~~~~a~~~l 250 (390)
T PRK08133 189 ALQQPL-KLGADVVIHSATKYL-DGQGRVLGGAVVGSKELMEE-V-FGFLR------------TAGP--TLSPFNAWVFL 250 (390)
T ss_pred ccCCch-hhCCcEEEeecceee-cCCcceEeEEEEcCHHHHHH-H-HHHHH------------HhCC--CCCHHHHHHHH
Confidence 543222 347899999999984 4444 3 667677665543 1 11100 0011 11111112222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
+-+. .+....++..+++..+.+.|.+.++++ ++.|. ...++++.|.+.. +.....+
T Consensus 251 ~gl~----tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~-----~~~~~~~ 321 (390)
T PRK08133 251 KGLE----TLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG-----GREAAWR 321 (390)
T ss_pred cccc----hHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC-----CHHHHHH
Confidence 2222 245555666788889999999887763 33331 1347899998851 1233556
Q ss_pred HHHHHhhhcceEeeecc-cC----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 376 LRGHLRVRFGVEVPIHY-QA----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~-~~----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+.+.|. -+.+.+..+. .+ +....+..... ++..+..++.||+|++. ||++.+++.|++.++
T Consensus 322 f~~~l~-l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 389 (390)
T PRK08133 322 VIDATR-LISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGL----EDVADIKADLARGLA 389 (390)
T ss_pred HHHhCC-cceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHhh
Confidence 666663 2344433221 10 00000000000 11225567899999984 566777777776653
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=208.44 Aligned_cols=359 Identities=13% Similarity=0.047 Sum_probs=247.0
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcC--Cch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCc--E-EEecChhH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQ--PDD-FYF--NSLRKGILESRAAVKDLINADDVGE--I-SLVDNATT 109 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~--~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~--i-~~t~g~t~ 109 (452)
...+.|- ++-...++.|++++...+..-+.. |.. +|. ...+++...+.++..++|+++ .+. + +..-||+.
T Consensus 148 ~~~l~LI-ASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~-~~~~gaNVQp~SGs~ 225 (586)
T PLN02271 148 FKGIELI-ASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLD-SEKWGVNVQPYSCTS 225 (586)
T ss_pred hcCeeec-cccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCc-ccccccceeeccHHH
Confidence 4455554 445677777999987776553332 222 222 233556677889999999986 311 1 45558899
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHH-----HHHHhcCcEEEEEeCCCCCC-ChHHH-HHHHHHHHh
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQ-----AYVTRAGGSVVEVQLPFPLA-SEEEI-INEFKKGIE 182 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~-----~~a~~~g~~v~~~~~~~~~~-~~~~~-~~~l~~~i~ 182 (452)
|+..++.++ ++|||+|+..+.+|.++..... ..+...|..+..++. +.+ +.+.+ ++++++.+.
T Consensus 226 AN~aV~~AL--------l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY--~~d~~~g~IDyd~lek~a~ 295 (586)
T PLN02271 226 ANFAVYTGL--------LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPY--KVNPQTGYIDYDKLEEKAL 295 (586)
T ss_pred HHHHHHHHh--------cCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEc--ccccccCccCHHHHHHHhh
Confidence 999999987 6999999998888777654321 113445777777654 333 34556 999998554
Q ss_pred ccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccccc---ccCccEEEEcCcccCcCCC
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVK---EIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~---~~~~d~~~~s~~K~l~g~~ 259 (452)
..+|++|++.+..++ ..+|+++|+++|+++|+ ++++|++|..|.+..+.. ..++|++++|+||||.||.
T Consensus 296 -----~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA-~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPr 367 (586)
T PLN02271 296 -----DFRPKILICGGSSYP--REWDYARFRQIADKCGA-VLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPR 367 (586)
T ss_pred -----hcCCeEEEECchhcc--CcCCHHHHHHHHHHcCC-EEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCC
Confidence 589999999887776 67899999999999999 899999999998865532 2258999999999999999
Q ss_pred CcEEEEEecCccccCCCCCceeccCCC-----------CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGN-----------GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
| |+++++++.... ..+....+.+. ......+. |.+....++++..++..+... .++.+.+++.
T Consensus 368 G-G~I~~r~~~~~~--~~g~~gs~s~~~~~~d~~~kI~~aVfPglq-gGphn~~IAalAvalkea~~~--efk~Ya~QVv 441 (586)
T PLN02271 368 G-GIIFYRKGPKLR--KQGMLLSHGDDNSHYDFEEKINFAVFPSLQ-GGPHNNHIAALAIALKQVATP--EYKAYMQQVK 441 (586)
T ss_pred c-eEEEeccccccc--ccCCccccccccccHHHHHHhhcccCCccc-cChhHHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 9 888888764432 11111100100 00011122 333334588888888877754 6788999999
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++++.|.+.|.+. |+++.... ...+.+++.+.. .+.+...+.+.| ++.||.+.....+...+
T Consensus 442 ~NAkaLA~~L~~~-G~~vv~gg-TdnHlvLvDl~~-----~g~~G~~ae~~L-e~~~I~~Nkn~iP~d~~---------- 503 (586)
T PLN02271 442 KNAQALASALLRR-KCRLVTGG-TDNHLLLWDLTT-----LGLTGKNYEKVC-EMCHITLNKTAIFGDNG---------- 503 (586)
T ss_pred HHHHHHHHHHHHC-CCeEeeCC-CCcceeeecCcc-----cCCCHHHHHHHH-HHcCeEeccccCCCCCC----------
Confidence 9999999999887 88876543 236788877742 244666666666 45699985433332111
Q ss_pred CCCccceEEecccccCC----HHHHHHHHHHHHHHHh
Q 012991 409 DGIITGYARISHQVYNT----LEDYEKFRDAVILLVE 441 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t----~~di~~l~~~l~~~~~ 441 (452)
...++.|||+....++ ++|++.+.+.|.++++
T Consensus 504 -~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 504 -TISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred -CCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 3456789999876664 6889999999998886
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=211.32 Aligned_cols=316 Identities=14% Similarity=0.103 Sum_probs=204.2
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN 130 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g 130 (452)
.|+.+++++.+..... . .+......+++++.+++++| + +++++++|||+++..++.++ +++|
T Consensus 10 ~~~~v~~a~~~~~~~~-----~--~~~~~~~~~~l~~~~a~~~g-~--~~~~~~~~gt~a~~~~~~~l--------~~~g 71 (338)
T cd06502 10 PTPEMLEAMAAANVGD-----D--VYGEDPTTAKLEARAAELFG-K--EAALFVPSGTAANQLALAAH--------TQPG 71 (338)
T ss_pred CCHHHHHHHHhcccCC-----c--ccCCCHHHHHHHHHHHHHhC-C--CeEEEecCchHHHHHHHHHh--------cCCC
Confidence 4555888887754211 1 23345668899999999999 4 67889999999999998876 4889
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc-cCCCceEEEEEeccCCCCccc--
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK-KDGKMIRLAIIDHITSMPCVV-- 206 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~-~~~~~~~lv~~~~~~n~tG~~-- 206 (452)
|+|++++++|.+...... .+...|++++.++. +. +.+ ++++++++++.. .+.+++++|++++++|+ |.+
T Consensus 72 d~v~~~~~~~~~~~~~~~-~~~~~g~~~~~v~~----~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~ 144 (338)
T cd06502 72 GSVICHETAHIYTDEAGA-PEFLSGVKLLPVPG----EN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYP 144 (338)
T ss_pred CeEEEecCcceeeecCCc-HHHHcCceEEeecC----CC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccC
Confidence 999999999987654321 13446999998853 32 334 889999885310 00137899999999997 544
Q ss_pred -ccHHHHHHHHHHcCCCEEEEecccccCC-----ccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCce
Q 012991 207 -IPVRKLVKICRDEGVDQVFVDAAHAMGS-----IKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVV 280 (452)
Q Consensus 207 -~~l~~i~~l~~~~~~~~~ivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~ 280 (452)
.++++|+++|+++|+ ++|+|++|..+. ..+.....++|+++.|+||++ +.+|.++++.++++++. + ....
T Consensus 145 ~~~l~~i~~~~~~~~~-~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~-~~~~g~~~~~~~~~~~~-~-~~~~ 220 (338)
T cd06502 145 LDELKAISALAKENGL-PLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGG-GAPVGAVVVGNRDFIAR-A-RRRR 220 (338)
T ss_pred HHHHHHHHHHHHHcCC-eEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccC-CCccceEEECCHHHHHH-H-HHHH
Confidence 346779999999999 799999874321 122211236889999999985 44443455667776664 1 1110
Q ss_pred eccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEE
Q 012991 281 SHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVG 360 (452)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 360 (452)
. .++ ++..... ....+++..+.. .+.....++..++++++.+.|.++ ++.+.. . ..+++.+.
T Consensus 221 ~-~~~----------~~~~~~~-~~~~a~~~~L~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~--~~~~~~v~ 282 (338)
T cd06502 221 K-QAG----------GGMRQSG-FLAAAGLAALEN--DLWLRRLRHDHEMARRLAEALEEL-GGLESE-V--QTNIVLLD 282 (338)
T ss_pred H-HhC----------CChhhHH-HHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHhc-CCCccc-c--cCCeEEEe
Confidence 0 000 1111111 122223333332 245666778888899999999887 554332 2 26677776
Q ss_pred cCCccccCChhhHHHHHHHHhh--hcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 361 LPSRLRVMGEDDALRLRGHLRV--RFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~L~~--~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
.+. ...-..++.+.+.+ +.|+.+... ..+++|++++.++|++|++++++++++
T Consensus 283 ~~~-----~~~~~~~l~~~l~~~~~~gi~~~~~--------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 283 PVE-----ANAVFVELSKEAIERRGEGVLFYAW--------------------GEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred cCC-----ccHHHHHHHHHHHHhhhCCEEEEec--------------------CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 641 11122334444421 248887431 126899999999999999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=214.94 Aligned_cols=369 Identities=16% Similarity=0.139 Sum_probs=225.6
Q ss_pred HHHHHhhhcc-CCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC
Q 012991 26 EAEIRDEFSH-HQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG 99 (452)
Q Consensus 26 ~~~ir~~~~~-~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~ 99 (452)
...+|+.+.. ..+.++.|.. +....|..+++...+.+... .+.....|....+..++|+.|++++ |.+ +++
T Consensus 116 ~~~~r~v~~~~~~p~~i~~~~-~~~~fp~~~i~~a~~~l~~~--~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe 192 (534)
T PLN02231 116 ITFFREVLALCDHPSLLDKSE-THGLFSADAIERAWQILDQI--PGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPN 192 (534)
T ss_pred cHHHHHHHHhccCCccCCCCC-ccccCCHHHHHHHHHHHHhc--CCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcc
Confidence 4444554432 2345666653 23344445555555544321 1222334666778888999999987 322 368
Q ss_pred cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHH
Q 012991 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFK 178 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~ 178 (452)
+|++|+|+++|+.+++.++. ..+||.|+++.|.|+.....+. ..|.+++.++++. ++...+ +++|+
T Consensus 193 ~I~iT~Ga~~ai~~~~~~l~-------~~~gd~Vli~~P~Y~~y~~~~~----~~g~~~v~~~l~~--~~~~~~d~~~Le 259 (534)
T PLN02231 193 DIFLTDGASPAVHMMMQLLI-------RSEKDGILCPIPQYPLYSASIA----LHGGTLVPYYLDE--ATGWGLEISELK 259 (534)
T ss_pred cEEEeCCHHHHHHHHHHHhc-------cCCCCEEEEeCCCChhHHHHHH----HcCCEEEEEecCc--ccCCCCCHHHHH
Confidence 99999999999999999872 1479999999999998765554 4588999886531 112234 88899
Q ss_pred HHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc-----cccccc---------
Q 012991 179 KGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKE--------- 241 (452)
Q Consensus 179 ~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~--------- 241 (452)
+.++.......+++++++++|+||||.+++ +++|+++|++||+ ++|+|+++..-.. ...+..
T Consensus 260 ~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l-~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~ 338 (534)
T PLN02231 260 KQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGL-VLLADEVYQENVYVPDKKFHSFKKVARSMGYGE 338 (534)
T ss_pred HHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEEccchhcccCCCCCcccHHHHHhhhcccc
Confidence 888643222337899999999999999997 4578899999999 7999999764221 111111
Q ss_pred cCc-cEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH----
Q 012991 242 IGA-DFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT---- 311 (452)
Q Consensus 242 ~~~-d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---- 311 (452)
.+. -+++.|++|.++|.+| +|++.+ ++++++. +. ... ... ..++...+.+...+++
T Consensus 339 ~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~-l~-k~~-----------~~~-~~s~~~~Q~~~~~~l~~p~~ 404 (534)
T PLN02231 339 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQ-IY-KVA-----------SVN-LCSNISGQILASLVMSPPKP 404 (534)
T ss_pred CCceEEEEeccCcccccCCccceEEEEEecCCHHHHHH-HH-HHH-----------hhh-cCCChHHHHHHHHHhCCCCC
Confidence 011 2556699997666555 788876 4555554 11 010 000 1122222322222321
Q ss_pred ---HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEE--cCCcc-cc---CChhhHHHHHHHHhh
Q 012991 312 ---FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVG--LPSRL-RV---MGEDDALRLRGHLRV 382 (452)
Q Consensus 312 ---~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~---~~~~~~~~l~~~L~~ 382 (452)
.........+.+++.++++++.+.+.|.+++++.+..|++ +.++|.. +|... .. ....+...++..|.+
T Consensus 405 ~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~G--gfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~ 482 (534)
T PLN02231 405 GDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEG--AMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLN 482 (534)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCe--eeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 0011000123456778889999999998877887766655 6667733 33100 00 000112345666666
Q ss_pred hcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 383 RFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 383 ~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.||.+.++..+... ....++|+++. .+.++++..+++|+++++.
T Consensus 483 ~~GV~vvPGs~Fg~~-------------~g~~~~Rit~~--~~~e~l~eal~RL~~~~~~ 527 (534)
T PLN02231 483 ATGIVVVPGSGFGQV-------------PGTWHFRCTIL--PQEDKIPAIVSRLTEFHKS 527 (534)
T ss_pred hcCEEEeCCcccCCC-------------CCCCeEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 679999877665221 22347999986 4788888888888777654
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=207.06 Aligned_cols=280 Identities=13% Similarity=0.100 Sum_probs=192.4
Q ss_pred HHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEE
Q 012991 81 GILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 81 ~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 160 (452)
...+++++++++++.+ +++|++|+|+++++.+++.. +.++ .|++.+|.|......+ +..|.+++.
T Consensus 41 ~~~~lr~~ia~~~~~~-~~~I~it~Gs~~~l~~~~~~---------~~~~-~vv~~~P~y~~y~~~~----~~~G~~v~~ 105 (332)
T PRK06425 41 SYTDIEDQIKIYTQGL-KIKVLIGPGLTHFIYRLLSY---------INVG-NIIIVEPNFNEYKGYA----FTHGIRISA 105 (332)
T ss_pred CHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHHH---------hCCC-cEEEeCCChHHHHHHH----HHcCCeEEE
Confidence 3788999999999997 89999999999999998863 2565 5777799998765554 556999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCcc-
Q 012991 161 VQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSIK- 236 (452)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~~- 236 (452)
++++ ..+...+ .++ ..++++|++++|+||||.+++. ++|+++|+++++ ++|+|+++..-...
T Consensus 106 vp~~----~~~~~~~----~l~-----~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~-~iI~DE~Y~~~~~~~ 171 (332)
T PRK06425 106 LPFN----LINNNPE----ILN-----NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGA-LLFIDEAFIDFVPNR 171 (332)
T ss_pred EeCC----cccCcHH----HHh-----hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCC-EEEEecchhcccccc
Confidence 9653 2111122 232 2478899999999999999985 466777899999 79999997532211
Q ss_pred ----ccc-cccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 237 ----IDV-KEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 237 ----~~~-~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
... ...+-.+++.|++|. +|.+| +|++++++++++. +. ... .+......+. .+
T Consensus 172 ~~~~~~~~~~~~~vi~~~SfSK~-~~l~GlRiGy~v~~~~li~~-l~-~~~----------------~~~~~~~~~~-~~ 231 (332)
T PRK06425 172 AEEDVLLNRSYGNVIIGRSLTKI-LGIPSLRIGYIATDDYNMKI-SR-KIT----------------EPWSVCDPAI-DF 231 (332)
T ss_pred chhHHHHhccCCCEEEEeecHHh-cCCchhhheeeecCHHHHHH-HH-HcC----------------CCCccCHHHH-HH
Confidence 011 111235777899995 77777 7999998887765 21 110 0000011111 11
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEee
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVP 389 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~ 389 (452)
+..... ..-.++.++.+++.++++.+.|.+. ++.+..++. ++++|+.++ +..++.+.|.++ ||.+.
T Consensus 232 l~~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~--g~f~~~~~~---------~~~~~~~~l~~~-gi~v~ 297 (332)
T PRK06425 232 IRSIDL-DYVAKHSLDIMENERSYLINNLEAM-GFRAAGDPS--ANFITFMIP---------DAHDFYSYLLKN-GILVR 297 (332)
T ss_pred HHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCC--ceEEEEEcC---------CHHHHHHHHHHC-CeEEE
Confidence 211110 0013456777888889999999886 666554443 678888774 456888888774 99998
Q ss_pred ecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 390 IHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
++..+.. ..++++|||++ +.++.++++++|++++
T Consensus 298 ~~~~f~~--------------~~~~~iRis~~---~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 298 LLDDYEC--------------LGEQYIRIAIR---RRSFNIKLVNALRNFL 331 (332)
T ss_pred ECCCCCC--------------CCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 7655421 22479999998 7999999999999875
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=208.57 Aligned_cols=312 Identities=13% Similarity=0.126 Sum_probs=206.0
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.+++++|++.|. +++++++||++|+.+++.++ +++||+|+++++.|.+.+..+......
T Consensus 47 Y~R~~npt~~~Le~~lA~leg~---e~ivvt~gg~~Ai~~~l~al--------l~~Gd~Il~~~~~y~~~~~~~~~~~~~ 115 (388)
T PRK08861 47 YTRSGNPNRGLLEQTLSELESG---KGAVVTNCGTSALNLWVSAL--------LGPDDLIVAPHDCYGGTYRLFNTRANK 115 (388)
T ss_pred ccCCCCchHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHH--------cCCCCEEEEcCCchHHHHHHHHHHHhc
Confidence 5555566789999999999997 59999999999999999987 589999999999999877777555566
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++..++ ..+ ++++++++ .+++++|++++|+||||.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 116 ~gi~v~~vd----~~d----~e~l~~~i------~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi-~vIvDea~~~~ 180 (388)
T PRK08861 116 GDFKVQFVD----QSD----AAALDAAL------AKKPKLILLETPSNPLVRVVDIAELCQKAKAVGA-LVAVDNTFLTP 180 (388)
T ss_pred CCeEEEEEC----CCC----HHHHHHhc------CcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCC-EEEEECCcccc
Confidence 788888883 222 67888888 5789999999999999999999999999999999 79999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
.....+ ..++|+++.|+|||++|+.+ .|+++.+++.+...+ ... ....| ...+.. .....++
T Consensus 181 ~~~~pl-~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~-~~~-~~~~G----------~~~~p~---~a~l~~r 244 (388)
T PRK08861 181 VLQKPL-ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEEL-AWW-GNCIG----------ATGTPF---DSYMTLR 244 (388)
T ss_pred ccCCCc-ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHH-HHH-HhccC----------CCCChH---HHHHHHh
Confidence 543222 35899999999999888765 466666543222101 000 00011 111111 1111222
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
-++ .+.--.++..+++..+.+.|++.|.++ |..|. ...++++.|.+.. +.....++
T Consensus 245 gl~----Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~-----~~~~~~~f 315 (388)
T PRK08861 245 GIR----TLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG-----SFEQLKVF 315 (388)
T ss_pred cCC----CHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC-----CHHHHHHH
Confidence 222 344456677888999999999987763 44431 1247899998851 12334566
Q ss_pred HHHHhhhcceEeeeccc-CC----CCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQ-AP----KDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~-~~----~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|. -+.+.+..+.. .. ....+..... ++..+..++.||+|++. ||++.+++.|++.++
T Consensus 316 ~~~l~-l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----E~~~dli~Dl~~al~ 382 (388)
T PRK08861 316 VKALA-LFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL----EDAQDLIADLDQAFA 382 (388)
T ss_pred HhcCC-cceEccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHH
Confidence 66663 34444433211 10 0000000000 01225567899999985 445555555555554
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=210.28 Aligned_cols=312 Identities=13% Similarity=0.171 Sum_probs=212.0
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++.+++++|.+ ..++++||++|+..++.++ +++||+|+++.+.|.+....+..++..
T Consensus 55 y~r~~~pt~~~Le~~lA~l~G~~---~al~~~sG~~Ai~~~l~al--------~~~Gd~Vv~~~~~y~~~~~~~~~~~~~ 123 (386)
T PRK06767 55 YSRLGNPTVKLFEERMAVLEGGE---EALAFGSGMAAISATLIGF--------LKAGDHIICSNGLYGCTYGFLEVLEEK 123 (386)
T ss_pred ccCCCCcchHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEcCCcHHHHHHHHHHHHhh
Confidence 44434566899999999999984 4566677788999888876 589999999999999887777776677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++..++. .+ ++++++++ .+++++|++++++||+|.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 124 ~gi~~~~~~~----~d----~~~l~~~i------~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~-~vivD~a~a~~ 188 (386)
T PRK06767 124 FMITHSFCDM----ET----EADIENKI------RPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGL-LVIVDNTFCSP 188 (386)
T ss_pred cCeEEEEeCC----CC----HHHHHHhh------CcCceEEEEeCCCCCCceecCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 7888777732 22 57888888 5689999999999999999999999999999999 79999999876
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
....++ ..++|+++.|++|+++|+.. .|+++.+++.+.+ +.... ....| +..+ ++ ....++.
T Consensus 189 ~~~~pl-~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~-~~~~~-~~~~g----------~~~~--~~-~a~l~~~ 252 (386)
T PRK06767 189 YLQRPL-ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAE-KIRPM-RKDIG----------GIMA--PF-DAWLLLR 252 (386)
T ss_pred ccCCch-hcCCcEEEecCcceecCCCCceeEEEEeChHHHHH-HHHHH-HHHhC----------CCCC--HH-HHHHHHc
Confidence 554333 34789999999998655443 4888888877654 11111 01111 1111 11 0111222
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCcc--------cccceEEEEcCCccccCChhhHHHHHHHHhh
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPPE--------ICAAMVMVGLPSRLRVMGEDDALRLRGHLRV 382 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 382 (452)
-+. .+....++.++++.++.+.|.+.++++ +..|.. ..++++.|.++. +..++.++.+.|.
T Consensus 253 ~L~----tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~-----~~~~~~~f~~~l~- 322 (386)
T PRK06767 253 GLK----TLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKG-----GKEETQAFINDLH- 322 (386)
T ss_pred CCC----cHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcC-----CHHHHHHHHHhCC-
Confidence 222 234455677899999999999998886 443321 236899998851 2346778999985
Q ss_pred hcceEeeecccCC-----CCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 383 RFGVEVPIHYQAP-----KDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 383 ~~gI~v~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+++.+..+.... ....+.... .++..+..++.+|+|++. ||.+.+++.|.+.++
T Consensus 323 ~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~ 384 (386)
T PRK06767 323 FITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL----ESWEDIVSDLEQALK 384 (386)
T ss_pred ccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 4688775543211 000010100 011235567899999984 566667777766653
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=211.30 Aligned_cols=343 Identities=15% Similarity=0.157 Sum_probs=234.7
Q ss_pred CCeEEeccCCCC--CCcHHHHH-HHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC----CC-CCCcEEEecChhH
Q 012991 38 HGVARINNGSFG--SCPKSVLA-DQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----AD-DVGEISLVDNATT 109 (452)
Q Consensus 38 ~~~~~l~~~~~~--~~p~~v~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~~~i~~t~g~t~ 109 (452)
...+.|..+.+. ..|..... .+...+... .......+...++...+|+.+++++. +. ++++|++|+|+++
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~--~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~ 166 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNY--GASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQ 166 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhc--chhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHH
Confidence 556777666543 34433333 233332211 11113345555777888888888764 32 3679999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK 189 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 189 (452)
|+.+++..+ ++|||.|++.+|+|++....++. .|.++..+ |.|+++..++.|++.++. .
T Consensus 167 al~l~~~~l--------~~pGd~v~vE~PtY~~~~~~~~~----~g~~~~~v----p~d~~G~~~e~le~~~~~-----~ 225 (459)
T COG1167 167 ALDLLLRLL--------LDPGDTVLVEDPTYPGALQALEA----LGARVIPV----PVDEDGIDPEALEEALAQ-----W 225 (459)
T ss_pred HHHHHHHHh--------CCCCCEEEEcCCCcHHHHHHHHH----cCCcEEec----CCCCCCCCHHHHHHHHhh-----c
Confidence 999999977 58999999999999988777644 59999999 556666669999999963 4
Q ss_pred ceEEE-EEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCc----c---ccccccCccEEEEcCcccCcCC
Q 012991 190 MIRLA-IIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSI----K---IDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv-~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~----~---~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
+++++ +.++.+||||..++.+ +|.++|++|++ ++|.|+.++.... + ......+-.+++.||||.+.-.
T Consensus 226 ~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~-~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~Pg 304 (459)
T COG1167 226 KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDV-LIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPG 304 (459)
T ss_pred CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCC-eEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccc
Confidence 67665 7778899999999976 79999999999 7999998764322 1 1122234568999999987666
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR--FEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~g~~~~~~~~~~~~~~l~~ 336 (452)
..+|++++++++++. +.... ......++...+.++. .++.+ +..-+..+++.+++.++.+.+
T Consensus 305 lRlG~vv~p~~~~~~-~~~~k------------~~~~~~~s~~~Q~~la---~~l~~G~~~~hl~~lR~~y~~rr~~l~~ 368 (459)
T COG1167 305 LRLGYVVAPPELIEK-LLRLK------------QAADLGPSSLSQAALA---AFLLSGHYDRHLRRLRREYARRRDALLE 368 (459)
T ss_pred cceeeeeCCHHHHHH-HHHHH------------HHhcCCCChHHHHHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 669999999887776 21111 0001122222322222 22221 011256677778888888888
Q ss_pred HHHHHcC--CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-cccCCCCCCCCCCCCCCCCCCcc
Q 012991 337 MLANAWG--TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI-HYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 337 ~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.|.+..+ +.+..|.+ +.++|+.+| .+.+..++.+.+.++ |+.+.. +..+... ....
T Consensus 369 ~L~~~~~~~~~~~~p~g--G~flwl~l~------~~~~~~~l~~~a~~~-gv~i~~~g~~f~~~------------~~~~ 427 (459)
T COG1167 369 ALAEYLPELATWTRPEG--GLFLWLELP------EGIDARELLAAALEK-GVVVTPLGSAFSAD------------GDPR 427 (459)
T ss_pred HHHHhCCCCeeeecCCc--eEEEEEEcC------CCCCHHHHHHHHHHC-CCEEEcCCccccCC------------CCCC
Confidence 8988743 34445544 889999998 467888888888765 888855 5555332 1245
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++.. +.+++++.++.|.+++.+
T Consensus 428 ~~~Rl~~s~~-~~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 428 NGLRLSFSSP-SEEEIEEGIKRLAALLRE 455 (459)
T ss_pred CeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 6999999874 588899999999888765
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=206.61 Aligned_cols=314 Identities=14% Similarity=0.142 Sum_probs=212.3
Q ss_pred hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHH
Q 012991 73 FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT 152 (452)
Q Consensus 73 ~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~ 152 (452)
.|++...+..+.++++++++-|. +..++++||++|+..++.++ +++||+|+++...|.+....+..+.+
T Consensus 55 ~YsR~~nPt~~~le~~la~LEg~---~~a~~~~SGmaAi~~~~~~l--------l~~GD~Vv~~~~~Yg~t~~l~~~~l~ 123 (395)
T PRK08114 55 FYGRRGTLTHFSLQEAMCELEGG---AGCALYPCGAAAVANAILAF--------VEQGDHVLMTGTAYEPTQDFCSKILS 123 (395)
T ss_pred cccCCCChhHHHHHHHHHHHhCC---CeEEEEhHHHHHHHHHHHHH--------cCCCCEEEEeCCCcHHHHHHHHHHHH
Confidence 36666677789999999999887 46777888999999999877 58999999999999998888876678
Q ss_pred hcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcC--CCEEEEeccc
Q 012991 153 RAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEG--VDQVFVDAAH 230 (452)
Q Consensus 153 ~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~--~~~~ivD~a~ 230 (452)
+.|+++++++ ..+ .+.+++++ .++|++|++++++||+|.+.|+++|+++||++| + +++||+++
T Consensus 124 ~~Gi~v~~vd----~~d----~~~l~~~l------~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~-~lvVDnT~ 188 (395)
T PRK08114 124 KLGVTTTWFD----PLI----GADIAKLI------QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDA-VIMIDNTW 188 (395)
T ss_pred hcCcEEEEEC----CCC----HHHHHHhc------CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCC-EEEEECCC
Confidence 8899999984 222 47788888 578999999999999999999999999999984 9 89999999
Q ss_pred ccCCccccccccCccEEEEcCcccCcCCC--CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 231 AMGSIKIDVKEIGADFYVSNLHKWFFCPP--SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 231 ~~g~~~~~~~~~~~d~~~~s~~K~l~g~~--G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
+.|.. .+...+|+|+++.|.+||++|+. +.|+++.+++..+. +. .. .. ..|. ..+...
T Consensus 189 a~p~~-~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~-l~-~~-~~-----------~~G~-----~~~p~~ 248 (395)
T PRK08114 189 AAGVL-FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQ-LR-EN-SY-----------LMGQ-----MVDADT 248 (395)
T ss_pred ccccc-cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHH-HH-HH-HH-----------hccC-----CCCHHH
Confidence 99877 88888999999999999988874 46777766654332 10 00 00 0121 111122
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhH
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDA 373 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 373 (452)
+...++.+ +.+.--.++..+++..+.++|++.|.++ |+.|. ...++++.|.+.... +....
T Consensus 249 a~l~~rgl-~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~---~~~~~ 324 (395)
T PRK08114 249 AYMTSRGL-RTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKL---TDEQL 324 (395)
T ss_pred HHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcc---cHHHH
Confidence 22222211 1344456677889999999999987663 44441 134789999885100 02234
Q ss_pred HHHHHHHhhhcceEeeecccCC-CC--CCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 374 LRLRGHLRVRFGVEVPIHYQAP-KD--DGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 374 ~~l~~~L~~~~gI~v~~~~~~~-~~--~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.++.+.|. -+.+.+..+.... -. ....... ..+.....++.||+|++. ||++.+++.|++.++
T Consensus 325 ~~f~~~l~-l~~~a~SlGg~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~DLi~Dl~~Al~ 392 (395)
T PRK08114 325 ANYLDNFS-LFSMAYSWGGFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIGL----EDVDDLIADLAAGFA 392 (395)
T ss_pred HHHHHhCC-cceeecccCCccceeccCCchhhhccCChhHhcCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 55666663 2344443322110 00 0000000 000112345899999984 556666666666554
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=207.41 Aligned_cols=310 Identities=14% Similarity=0.154 Sum_probs=211.2
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++.+++++|.+ .++++++|+.|+.+++. + +++||+|+++++.|.++...+..++.+
T Consensus 41 Y~r~~~p~~~~le~~la~l~g~~---~~l~~~sG~~al~~~l~-l--------l~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 108 (378)
T TIGR01329 41 YTRSGNPTRTALESLLAKLDKAD---RAFAFSSGMAALDVITR-L--------LNNGDEIIAGDDLYGGTDRLLTQVVPR 108 (378)
T ss_pred cCCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHH-H--------hCCCCEEEEcCCCchHHHHHHHHHHHH
Confidence 33333455789999999999984 56677777888887665 3 489999999999999988888777788
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. .+ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++++|++++.+
T Consensus 109 ~G~~v~~vd~----~d----~~~le~~i------~~~tklv~le~psnptg~v~dl~~I~~la~~~g~-~vivD~a~~~~ 173 (378)
T TIGR01329 109 SGVVVVHVDT----TD----LDKVKAAL------GPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNA-LVVVDNTMMSP 173 (378)
T ss_pred cCcEEEEeCC----CC----HHHHHHhc------CcCceEEEEECCCCCCCeeecHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 22 67888888 5789999999999999999999999999999999 89999999777
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCcc-ccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSIL-SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
.....+ .+++|++++|++||++|+.+ .|+++++++.. ++ + .+... .. |.... +. .....+
T Consensus 174 ~~~~~l-~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~-~-~~~~~-~~-----------G~~~~-~~-~a~l~~ 236 (378)
T TIGR01329 174 LLCNPL-ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKK-V-YFLQN-ST-----------GSGLA-PF-DCWLLL 236 (378)
T ss_pred ccCChh-hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHH-H-HHHHH-hc-----------CCcCC-HH-HHHHHH
Confidence 543333 45899999999999888876 78888866544 32 1 11100 00 11100 10 011111
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
.-++ .+....++..+++..+.+.|.+.+.+. +..|. ...++++.|.+. +...+.+
T Consensus 237 ~~l~----tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~------~~~~~~~ 306 (378)
T TIGR01329 237 RGIK----TLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETG------SVALSKR 306 (378)
T ss_pred ccCC----CHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEEC------CHHHHHH
Confidence 1111 355556777888888888898876542 22221 134688999883 2234778
Q ss_pred HHHHHhhhcceEeeecccCC-----CCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 376 LRGHLRVRFGVEVPIHYQAP-----KDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+.| +.++|.++.+.... ....+..... +++.+..++.+|+|++ .||++.+++.|++.++.
T Consensus 307 ~~~~L-~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG----lE~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 307 LVEAT-KLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVG----IEDVDDLISDLDIAFVT 375 (378)
T ss_pred HHHhC-cCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHHh
Confidence 99999 45788876543210 0000101000 1122456789999998 46677777777777653
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=219.66 Aligned_cols=350 Identities=19% Similarity=0.181 Sum_probs=247.6
Q ss_pred CCCHHHHHhhhccC---CCC-eEEeccCCCC-CCcHHHHHHHHHHHHHHhc-CCchh-hhhhhhHHHHHHHHHHHhHhCC
Q 012991 23 CISEAEIRDEFSHH---QHG-VARINNGSFG-SCPKSVLADQQKWQLKFLQ-QPDDF-YFNSLRKGILESRAAVKDLINA 95 (452)
Q Consensus 23 ~~~~~~ir~~~~~~---~~~-~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~la~~~~~ 95 (452)
.++..++.++|..+ +.. .-|++.|..+ ..|+.+.+.+.+.-..+.. .|-.. -+.+..+.+.+.++.+++++|.
T Consensus 57 ~~sE~e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~ 136 (954)
T PRK05367 57 ALSEAEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGL 136 (954)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHhCcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCC
Confidence 46666666665432 222 2356777766 5666554655443221111 11110 2345566788899999999999
Q ss_pred CCCCcEEEecChhHHHHHHHHHhhcccccCCCCC--CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 96 DDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR--NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 96 ~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~--g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
+ .+++.++.++|++.+.++.++. .++ +++|++++.+|+++...|..+++..|++++.++. +++
T Consensus 137 ~-~anaSl~d~aTAa~ea~~~a~~-------~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~----~~d--- 201 (954)
T PRK05367 137 E-IANASLLDEATAAAEAMALAKR-------VSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDA----AKA--- 201 (954)
T ss_pred C-hhhccccccHHHHHHHHHHhhh-------hccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecC----ccC---
Confidence 6 8899999999999998888763 344 4899999999999999998888999999999953 211
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcc
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHK 253 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K 253 (452)
++ ..++..+++.. .|.+|.+.|+++|+++||++|+ ++++|+.+..+....+...+|+|++++++||
T Consensus 202 -------~~-----~~~~~~vlvq~-p~~~G~i~d~~~i~~~ah~~Ga-l~~vda~~~Al~~l~~pge~GaDi~vgs~qk 267 (954)
T PRK05367 202 -------LD-----HDDVFGVLLQY-PGTSGEVRDYTALIAAAHARGA-LVAVAADLLALTLLTPPGEMGADIAVGSAQR 267 (954)
T ss_pred -------CC-----cccEEEEEEec-CCCCeeeccHHHHHHHHHHcCC-EEEEEehhhhccCCCChhhcCCCEEEeeCcc
Confidence 11 23566666665 4679999999999999999999 8999997755444457788899999999999
Q ss_pred c-----CcCCCCcEEEEEecCccccCCCCCceecc---CCCC-cc--------cccccccccCccccccHHHHH-----H
Q 012991 254 W-----FFCPPSVAFLYCRKSILSSDMHHPVVSHE---FGNG-LP--------IESAWIGTRDYSAQLVIPSAV-----T 311 (452)
Q Consensus 254 ~-----l~g~~G~G~l~~~~~~~~~~l~~~~~~~~---~~~~-~~--------~~~~~~~~~~~~~~~~~~~al-----~ 311 (452)
| ++|| |+|++++++++.+. +-.+...+. .|.. .. ..+.+.++.|+....++.+.+ .
T Consensus 268 fg~P~g~GGP-~aGflavr~~~~r~-lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~ 345 (954)
T PRK05367 268 FGVPMGFGGP-HAAYFAVRDAYKRS-MPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAV 345 (954)
T ss_pred cCCCCCCCCC-CEEEEEECHHHHhh-CCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 8 3344 59999999988776 322333221 1111 11 113456787887655555444 3
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
++... |++++.+++..+++++.+.|.. .|+++..+.. ...+.+.++ .++.++.+.|.++ ||.++.
T Consensus 346 ~~g~~--Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~~~--f~~~~~~~~--------~~~~~i~~~l~~~-gi~~~~- 410 (954)
T PRK05367 346 YHGPE--GLKAIARRVHRLAAILAAGLRA-LGLEVVHDSF--FDTLTVEVG--------GDAAAVLARALAA-GINLRR- 410 (954)
T ss_pred HHhhh--hHHHHHHHHHHHHHHHHHHHHh-cCcccCCCCC--CCeEEEeCC--------CCHHHHHHHHHHC-Cceecc-
Confidence 34544 9999999999999999999977 4887765432 345555542 2677899999775 999842
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
..++.+|+|++.++|++||+++++++.
T Consensus 411 -------------------~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 411 -------------------VDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred -------------------ccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 224579999999999999999999997
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=207.77 Aligned_cols=362 Identities=13% Similarity=0.083 Sum_probs=236.9
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcEEE---ecChhH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPDD-FYF--NSLRKGILESRAAVKDLINADDVGEISL---VDNATT 109 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i~~---t~g~t~ 109 (452)
+..+.|- ++-...++.|++++...+..-++ .|+. +++ ...+++.+.++++.+++|+.. .+.+++ +.+|+.
T Consensus 34 ~~~l~li-asen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~-~~~~~~nv~~~SG~~ 111 (475)
T PLN03226 34 WKGLELI-ASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLD-PEKWGVNVQPLSGSP 111 (475)
T ss_pred HcCeeEe-cCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCC-cceeEEecCcCchHH
Confidence 4555665 45667777799999888743222 2222 221 223445555777889999986 444433 478999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCC---cchhHHHHHHHH-HHhcCcEEEEEeCCCCCC-ChHHH-HHHHHHHHhc
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHC---AFQAVKKSIQAY-VTRAGGSVVEVQLPFPLA-SEEEI-INEFKKGIEK 183 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~---~~~s~~~~~~~~-a~~~g~~v~~~~~~~~~~-~~~~~-~~~l~~~i~~ 183 (452)
|+..++.++ +++||+|+..+. .|.++....... ....+..+..++. ..+ +.+.+ +++|++.+++
T Consensus 112 AN~av~~aL--------~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y--~~~~~~g~iD~d~Le~~l~~ 181 (475)
T PLN03226 112 ANFAVYTAL--------LQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPY--RLDESTGLIDYDKLEKKAML 181 (475)
T ss_pred HHHHHHHHh--------CCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeee--eecCCCCCcCHHHHHHHHhh
Confidence 999999987 589999998543 343321111000 0111222222222 333 33455 8999998853
Q ss_pred cccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccc---cCccEEEEcCcccCcCCCC
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE---IGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~---~~~d~~~~s~~K~l~g~~G 260 (452)
.++++|++. .+.+|...|+++|.++|+++|+ ++++|++|++|.+..+... .++|++++++||||.||.|
T Consensus 182 -----~~pklIv~~--~S~~s~~~D~a~i~~ia~~~ga-~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G 253 (475)
T PLN03226 182 -----FRPKLIIAG--ASAYPRDWDYARMRKIADKVGA-LLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG 253 (475)
T ss_pred -----cCCeEEEEe--cCcCCCccCHHHHHHHHHHcCC-EEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc
Confidence 467777663 2347889999999999999999 8999999999987655332 2689999999999999999
Q ss_pred cEEEEEecCccccCCCCCceec-cC--CCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSH-EF--GNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
|+++++++.... +....... ++ -........+.++++...++++.++++++... +++.+++++.+++++|.+.
T Consensus 254 -g~I~~~~~~~~~-~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~--~~~~~~~~~~~na~~L~~~ 329 (475)
T PLN03226 254 -GMIFFRKGPKPP-KGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP--EFKAYQKQVKANAAALANR 329 (475)
T ss_pred -eEEEEchhhccc-ccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHH
Confidence 888888765532 10000000 00 00000001123567777888899999998865 8899999999999999999
Q ss_pred HHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 338 LANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 338 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
|.+. |+.+..+... .+++++.+.. .+.+..++.+.|.+ .||.+.....|.... ...+..+|
T Consensus 330 L~~~-G~~l~~~~t~-~hi~lv~~~~-----~gi~~~~~~~~L~~-~~I~~nk~~~p~~~~-----------~~~~~giR 390 (475)
T PLN03226 330 LMSK-GYKLVTGGTD-NHLVLWDLRP-----LGLTGSRVEKVLDL-AHITLNKNAVPGDSS-----------ALVPGGVR 390 (475)
T ss_pred HHhC-CCEEEcCCCC-CCEEEEEccC-----CCCCHHHHHHHHHH-CCCEECCCCCCCCcc-----------cCCCCCcc
Confidence 9885 8887764322 4677676621 35677788888865 599986543221100 23456799
Q ss_pred eccc----ccCCHHHHHHHHHHHHHHHhc
Q 012991 418 ISHQ----VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 418 is~~----~~~t~~di~~l~~~l~~~~~~ 442 (452)
++.. ...+++|++++++.|.++++.
T Consensus 391 iGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 391 IGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred cCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 8543 334689999999999999973
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=210.15 Aligned_cols=347 Identities=15% Similarity=0.131 Sum_probs=218.0
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHH-HHHhc-CCchhhhhhhhHHHHHHHH----HHHhHhCCCCCCcEEEecChhHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQ-LKFLQ-QPDDFYFNSLRKGILESRA----AVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~----~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
+..++|- ++....++.|++++...+ ..+.. .+.+.+-.+ .+..+++++ .+++++|.+ ..+++++||+.|+
T Consensus 28 ~~~~~l~-~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~~--~alv~~~SG~~A~ 103 (416)
T PRK13034 28 QDHLELI-ASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGCD--YANVQPHSGSQAN 103 (416)
T ss_pred hcCeeec-ccccCCCHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCCC--ceEEecCCcHHHH
Confidence 4555554 334455777999998875 43311 111111111 244455555 999999995 4446678999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHH-HHHHHHHhcCcEE--EEEeCCCCCCC-hHHH-HHHHHHHHhcccc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKK-SIQAYVTRAGGSV--VEVQLPFPLAS-EEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~-~~~~~a~~~g~~v--~~~~~~~~~~~-~~~~-~~~l~~~i~~~~~ 186 (452)
..++.++ +++||+|++++..|.+... +... ...+... ..+ +.+. ...+ ++++++.++.
T Consensus 104 ~~~l~al--------~~~GD~Vl~~~~~~~~~~~~g~~~--~~~~~~~~~~~~----~~~~~~~~~d~~~le~~l~~--- 166 (416)
T PRK13034 104 GAVYLAL--------LKPGDTILGMSLSHGGHLTHGAKV--SLSGKWYNAVQY----GVDRLTGLIDYDEVEELAKE--- 166 (416)
T ss_pred HHHHHHh--------cCCCCEEEEcCccceeeeecCCcc--eeccceeeeEEc----ccccccCCcCHHHHHHHHhh---
Confidence 9999987 5899999999999977311 1100 0011111 222 2211 1223 7888888852
Q ss_pred CCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccc---cCccEEEEcCcccCcCCCCcEE
Q 012991 187 DGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE---IGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~---~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
.++++|+++++ .+|...|+++|.++|+++|+ ++++|++|++|....+... .++|++++|+|||+.|+.| |+
T Consensus 167 --~~~klVi~~~~--~~g~~~dl~~l~~la~~~g~-~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~ 240 (416)
T PRK13034 167 --HKPKLIIAGFS--AYPRELDFARFREIADEVGA-LLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GM 240 (416)
T ss_pred --cCCeEEEECCC--ccccccCHHHHHHHHHHcCC-EEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eE
Confidence 35788887654 36888899999999999999 8999999998876443211 2589999999999888887 77
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
++++++.+.. ...... +.+ +.+.+......++..++....+. +...++++++++++++++.|.++ |
T Consensus 241 v~~~~~~~~~-~~~~~~---~~~-------~~~~~~~~~~aa~~~al~~~~~~--~~~~~~~~l~~~a~~l~~~L~~~-G 306 (416)
T PRK13034 241 ILTNDEEIAK-KINSAV---FPG-------LQGGPLMHVIAAKAVAFGEALQP--EFKTYAKQVIANAQALAEVLKER-G 306 (416)
T ss_pred EEECcHHHHH-HHHhhc---CCc-------ccCCccHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 7776554433 111110 000 00122222333333333333221 44567889999999999999887 8
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc-
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV- 422 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~- 422 (452)
+.+..+. ..++++.+.+.+ .+.+...+.+.|.+ .||.+.....+.... ....+..+|++++.
T Consensus 307 ~~~~~~~-~~t~i~~v~~~~-----~~~~~~~~~~~L~~-~GI~v~~~~~p~~~~----------~p~~~~~lR~~~~~~ 369 (416)
T PRK13034 307 YDLVSGG-TDNHLLLVDLRP-----KGLSGKDAEQALER-AGITVNKNTVPGDTE----------SPFVTSGIRIGTPAG 369 (416)
T ss_pred CEeccCC-CCCcEEEEEcCC-----CCCCHHHHHHHHHh-CCcEEeccCCCCCCc----------CCCCCCeeEeCcHHH
Confidence 8765431 125666666541 23455667788865 599986422211000 01224679999887
Q ss_pred ---cCCHHHHHHHHHHHHHHHhc
Q 012991 423 ---YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 423 ---~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++||++++++|++++..
T Consensus 370 t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 370 TTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred HhCCCCHHHHHHHHHHHHHHHhc
Confidence 55699999999999999874
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=206.36 Aligned_cols=312 Identities=15% Similarity=0.164 Sum_probs=207.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.++++++++.|.+ .+++++||++|+..++.++ +++||+|+++++.|++.+..+..++..
T Consensus 46 Y~R~~~pt~~~L~~~lA~l~g~~---~~i~~~sg~~Ai~~~l~~l--------~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 114 (386)
T PRK08045 46 YSRRGNPTRDVVQRALAELEGGA---GAVLTNTGMSAIHLVTTVF--------LKPGDLLVAPHDCYGGSYRLFDSLAKR 114 (386)
T ss_pred eeCCCCccHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHH--------cCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 44555667899999999999963 6999999999999999876 589999999999999887777766666
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.+.++..++ ..+ .+++++++ .+++++|++++++||||.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 115 ~gi~v~~vd----~~d----~e~l~~~l------~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~-~vivDeay~~~ 179 (386)
T PRK08045 115 GCYRVLFVD----QGD----EQALRAAL------AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGA-VSVVDNTFLSP 179 (386)
T ss_pred CCeEEEEeC----CCC----HHHHHHhc------ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCC-EEEEECCCCcc
Confidence 677777763 111 67788888 5689999999999999999999999999999999 89999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
...... ..++|+++.|++||++|+.+ .|+++.+ +++.+. +. ......| ...+. .....++
T Consensus 180 ~~~~pl-~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~-l~--~~~~~~g----------~~~~p---~~~~l~~ 242 (386)
T PRK08045 180 ALQNPL-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTE-LA--WWANNIG----------VTGGA---FDSYLLL 242 (386)
T ss_pred ccCCch-hhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHH-HH--HHHHhcC----------CCCCH---HHHHHHH
Confidence 543222 45789999999999887776 5766664 333332 10 0000000 11111 1112222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
+-++ .+...+++..+++..+.+.|++.|.++ |..|. ...++++.|.++. +.....+
T Consensus 243 rgl~----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~-----~~~~~~~ 313 (386)
T PRK08045 243 RGLR----TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-----DEQTLRR 313 (386)
T ss_pred hhhc----cHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC-----cHHHHHH
Confidence 3333 345556778889999999999887663 43331 1347899998851 1233456
Q ss_pred HHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 376 LRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+.|. -+.+.+..+... +....+..... +...+..++.+|+|++. ||++.+++.|++.++.
T Consensus 314 f~~~l~-~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~ 382 (386)
T PRK08045 314 FLGGLS-LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFRA 382 (386)
T ss_pred HHHhcc-ceeEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHHH
Confidence 777773 334444322111 00000000000 11235567899999985 4566666666666554
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=206.44 Aligned_cols=347 Identities=15% Similarity=0.189 Sum_probs=220.1
Q ss_pred hhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 32 EFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.|+.. .+.||++.+...+.+..+.+.... ......+.+...+...++++.+++++|++ ...++++|+.|+
T Consensus 24 ~~~~~-~~pi~~~~~~~~~~~~~~~~~~~~------~~~~~~y~r~~~p~~~~Le~~lA~l~G~~---~~~~~~sG~~Ai 93 (398)
T PRK07504 24 QFGET-SEALFLTQGFVYDTAEAAEARFKG------EDPGFIYSRYSNPTVDMFEKRMCALEGAE---DARATASGMAAV 93 (398)
T ss_pred CCCCC-cCCeECCCCccCCCHHHHHHHhcc------CcCCceeecCCCchHHHHHHHHHHHhCCC---eeeEecCHHHHH
Confidence 35433 346899988777766654432211 01111233334556789999999999995 334578889999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
..++.++ +++||+|+++.+.|.+....+...+...|++++.++ ..+ ++++++++ .++|
T Consensus 94 ~~~l~~~--------l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd----~~d----~e~l~~ai------~~~t 151 (398)
T PRK07504 94 TAAILCQ--------VKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVD----GLD----LDNWEKAV------RPNT 151 (398)
T ss_pred HHHHHHH--------hCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEEC----CCC----HHHHHHhc------CcCc
Confidence 8777654 589999999999999887777666677899999883 111 68888888 5789
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCC-Cc-EEEEEecC
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPP-SV-AFLYCRKS 269 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~-G~-G~l~~~~~ 269 (452)
++|++++++||+|.+.|+++|.++|+++|+ ++++|++++.+.... ....++|+++.|++|+++|+. .. |+++.+++
T Consensus 152 klV~lesp~NptG~v~dl~~I~~la~~~gi-~lvvD~a~a~~~~~~-~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~ 229 (398)
T PRK07504 152 KVFFLESPTNPTLEVIDIAAVAKIANQAGA-KLVVDNVFATPLFQK-PLELGAHIVVYSATKHIDGQGRCLGGVVLSDKA 229 (398)
T ss_pred eEEEEECCCCCCcEecCHHHHHHHHHHcCC-EEEEECCccccccCC-chhhCCCEEEeeccccccCCccceEEEEEeCcH
Confidence 999999999999999999999999999999 799999998765432 224579999999999865532 14 56666666
Q ss_pred ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCC
Q 012991 270 ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGS 348 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~ 348 (452)
.+.+.+ ..... ..|. ..+......++.-++ .+....++..+++..+.+.|.+.+++. |..
T Consensus 230 ~i~~~~-~~~~~------------~~g~--~~s~~~A~~~l~~L~----tl~~R~~~~~~na~~la~~L~~~p~v~~v~y 290 (398)
T PRK07504 230 WIEEHL-QDYFR------------HTGP--SLSPFNAWTLLKGLE----TLPVRVRQQTESAAAIADFLAGHPKVARVIY 290 (398)
T ss_pred HHHHHH-HHHHH------------HhCC--CCCHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence 554201 00000 0011 111112222333333 244456666788999999999887763 333
Q ss_pred Cc---c-----------cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCC
Q 012991 349 PP---E-----------ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARD 407 (452)
Q Consensus 349 ~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~ 407 (452)
|. + ..++++.|.+.. +...+.++.+.|. -+.+.+..+... +....+.... .++
T Consensus 291 p~l~~~~~~~~~~~~~~g~g~~~s~~~~~-----~~~~~~~~~~~l~-~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~ 364 (398)
T PRK07504 291 PGRADHPQADIIAKQMTGGSTLVAFELKG-----GKEAAFRFLNALK-IVRISNNLGDAKSLITHPATTTHKNLSPEARA 364 (398)
T ss_pred CCCCCCccHHHHHHhCCCCccEEEEEeCC-----CHHHHHHHHHhCC-cceecccCCCCCeeeeCCCCCCcccCCHHHHH
Confidence 31 1 237899998851 1234556777763 344444322110 0000000000 011
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
..+..++.+|+|++. ||.+.+++.|+..++
T Consensus 365 ~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 394 (398)
T PRK07504 365 ELGISEGFLRLSAGL----EDTDDLIEDLAAALK 394 (398)
T ss_pred hcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 235667899999985 455566666665554
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-23 Score=201.63 Aligned_cols=343 Identities=12% Similarity=0.101 Sum_probs=212.5
Q ss_pred cHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDD-FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN 130 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g 130 (452)
.+.+.++..+.+..+...... ...++......++++++++++|.+ +.+++++|.+ ++..++.++ +++|
T Consensus 14 ~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e--~al~~~sG~~-a~~~~i~~l--------~~~G 82 (392)
T PLN03227 14 SPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTE--SAILYSDGAS-TTSSTVAAF--------AKRG 82 (392)
T ss_pred CHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCC--cEEEecCcHH-HHHHHHHHh--------CCCC
Confidence 344888887777665332222 112455568899999999999995 5666666655 445666665 5899
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhcc-----ccCCCceEEEEEeccCCCCcc
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKG-----KKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~-----~~~~~~~~lv~~~~~~n~tG~ 205 (452)
|+|++++..|.+....+.. .+.+++.+ +.++... .+.+.+.++.. ...++++++|+++.++|++|.
T Consensus 83 D~Vl~~~~~h~s~~~~~~l----~~~~~~~~----~~~d~~~-l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~ 153 (392)
T PLN03227 83 DLLVVDRGVNEALLVGVSL----SRANVRWF----RHNDMKD-LRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGT 153 (392)
T ss_pred CEEEEeccccHHHHHHHHH----cCCeEEEe----CCCCHHH-HHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCc
Confidence 9999999999998776632 35677777 3333211 23333333210 001246899999999999999
Q ss_pred cccHHHHHHHHHHcCCCEEEEecccccCCccc---------ccc-ccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVK-EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 206 ~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~-~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
+.|+++|.++|++||+ ++|+|++|++|.... ++. ..++|++++|++|+ .|+.| |++++++++++. +
T Consensus 154 i~~l~~i~~l~~~~g~-~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~-~g~~g-g~v~~~~~~~~~-~ 229 (392)
T PLN03227 154 LAPLKELVALKEEFHY-RLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENA-FGSVG-GMTVGSEEVVDH-Q 229 (392)
T ss_pred ccCHHHHHHHHHHcCC-EEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhh-hhccC-cEEecCHHHHHH-H
Confidence 9999999999999999 899999998664321 121 23569999999997 66775 777777776643 1
Q ss_pred CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC------
Q 012991 276 HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP------ 349 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~------ 349 (452)
... +. ...+.++.+.....+..+++....+ .+.++++++++.+++++.|.+. +......
T Consensus 230 -~~~-----~~----~~~~~~~~~p~~~~aa~~al~~~~~----~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~ 294 (392)
T PLN03227 230 -RLS-----GS----GYCFSASAPPFLAKADATATAGELA----GPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLV 294 (392)
T ss_pred -HHh-----Cc----CccccCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHhc-CCccccccccccc
Confidence 111 00 0011122111112222223333221 3567888899999999999763 3321100
Q ss_pred --cccccceEEEEcCCccccC---ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 350 --PEICAAMVMVGLPSRLRVM---GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 350 --~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
....++++.+.+.+..... +.....++.+.+.++ |+.+......+.. .+ -...+..+|++++..+
T Consensus 295 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gi~~~~~~~~~~~-----~~----~~~P~~~iR~~~~~~~ 364 (392)
T PLN03227 295 ITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSE-GVAVVSTGGHVKK-----FL----QLVPPPCLRVVANASH 364 (392)
T ss_pred cCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHC-CCEEEecccccCC-----cC----CCCCCceEEEEecCCC
Confidence 0112567777664200000 000124788888765 9988532110000 00 0234578999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc
Q 012991 425 TLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~~ 443 (452)
|++||++++++|+++++..
T Consensus 365 t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 365 TREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999764
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=205.87 Aligned_cols=311 Identities=15% Similarity=0.188 Sum_probs=207.5
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++......++++++++++.+. +++++++||++|+.+++.++ +++||+|+++.+.|.+.+..+..++..
T Consensus 45 Y~R~~~p~~~~le~~lA~l~g~---~~v~~~~gg~~Ai~~~l~al--------l~~GD~Vl~~~p~y~~~~~~~~~~~~~ 113 (382)
T TIGR02080 45 YSRSGNPTRDLLQQALAELEGG---AGAVVTNTGMSAIHLVTTAL--------LGPDDLLVAPHDCYGGTYRLLNALAKK 113 (382)
T ss_pred ccCCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHH--------cCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 3444456688999999999986 47999999999999999987 589999999999999888777766666
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.++++..++ ..+ .+.+++++ .+++++|++++++||||.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 114 ~~~~v~~~d----~~d----~~~l~~ai------~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~-~vvvD~a~~~~ 178 (382)
T TIGR02080 114 GCFRVLFVD----QGD----EQALRAAL------AQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGA-VVVVDNTFLSP 178 (382)
T ss_pred cCeEEEEEC----CCC----HHHHHHhc------CcCceEEEEECCCCCCCEecCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 678887773 222 67888888 5679999999999999999999999999999999 89999999876
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
....++ ..++|+++.|++||+.|+.+ .|+++.++ ++.+. + ... ....|. +.+ + .....++
T Consensus 179 ~~~~pl-~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~-l-~~~-~~~~g~----------~~s--p-~~a~l~l 241 (382)
T TIGR02080 179 ALQNPL-ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEE-L-AWW-ANNLGV----------TGG--A-FDSYLTL 241 (382)
T ss_pred ccCCch-hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHH-H-HHH-HHccCC----------CCC--H-HHHHHHH
Confidence 543222 34789999999999877766 57766654 44332 1 110 000111 111 1 1112223
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
+-++. +....++..+++..+.++|++.+.++ |..|. ...++++.|.+++ +.....+
T Consensus 242 r~l~t----l~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-----~~~~~~~ 312 (382)
T TIGR02080 242 RGLRT----LVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG-----GEQTVRR 312 (382)
T ss_pred cccch----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC-----cHHHHHH
Confidence 33332 33345667788888999999877653 43331 1347899998851 1223456
Q ss_pred HHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 376 LRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+.+.|. -+++.+..+... +....+..... +++.+..++.+|+|++. ||++.+++.|++.++
T Consensus 313 f~~~l~-~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~dl~~dl~~al~ 380 (382)
T TIGR02080 313 FLGGLS-LFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL----EDADDLIADLEQGLR 380 (382)
T ss_pred HHHcCC-cceEeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 777773 345554332211 00000000000 11235567899999984 567777777777665
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-23 Score=197.66 Aligned_cols=301 Identities=15% Similarity=0.177 Sum_probs=198.6
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
....|. +.++..+.+..+. +..+..+++++.+|+++|.+ ++++++++||++|+..++.++ .
T Consensus 32 l~~~~~-~~~~~~~~~~~~~---------g~~~~~~~Le~~lA~~~g~~-~e~ilv~~gg~~a~~~~~~al--------~ 92 (346)
T TIGR03576 32 LAGGFK-IDEEDLELLETYV---------GPAIFEEKVQELGREHLGGP-EEKILVFNRTSSAILATILAL--------E 92 (346)
T ss_pred CCCChh-HHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHcCCC-cceEEEECCHHHHHHHHHHHh--------C
Confidence 444555 7777777665542 23467899999999999996 789999999999999999987 5
Q ss_pred CCCCEEEEe---CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 128 HRNDTVLML---HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 128 ~~g~~Vl~~---~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
++||+|+++ .+.|.++.... +..|.++... .+ ++.++. .+++++|+++. ++|+|
T Consensus 93 ~~gd~Vli~~~d~p~~~s~~~~~----~l~ga~~~~~------~~----l~~l~~--------~~~~~lIiitg-~s~~G 149 (346)
T TIGR03576 93 PPGRKVVHYLPEKPAHPSIPRSC----KLAGAEYFES------DE----LSELKK--------IDGTSLVVITG-STMDL 149 (346)
T ss_pred CCCCEEEECCCCCCCchhHHHHH----HHcCCEEecc------CC----HHHHhh--------CcCceEEEEEC-CCCCC
Confidence 899999974 46887765554 4457765322 11 233321 24578888865 68899
Q ss_pred cc---ccHHHHHHHHHHcCCCEEEEecccccCCccc-c---ccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC
Q 012991 205 VV---IPVRKLVKICRDEGVDQVFVDAAHAMGSIKI-D---VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277 (452)
Q Consensus 205 ~~---~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-~---~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~ 277 (452)
.+ .|+++|+++|+++|+ ++++|+||+.+.... + ....++|+++.|++|++.|+.| |++++++++++. + .
T Consensus 150 ~v~~~~~L~~i~~la~~~~~-~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r~-G~v~~~~~li~~-l-~ 225 (346)
T TIGR03576 150 KVVSEEDLKRVIKQAKSKEA-IVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPRG-GLLAGRKELVDK-I-K 225 (346)
T ss_pred cccCHHHHHHHHHHHHHcCC-EEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccce-EEEEeCHHHHHH-H-H
Confidence 98 578899999999999 799999998765321 1 1223578999999998768875 999999888775 2 1
Q ss_pred CceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceE
Q 012991 278 PVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMV 357 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 357 (452)
.... .+..+.+...+.+..++++. . ..+..++..+++.+.+.+.+.. +.+..++ .+|+
T Consensus 226 ~~~~-----------~~~~s~~~~~~~aa~~aL~~---~--~~~~~~~~l~~r~~~~~~~l~~---~~~~~~~---~~f~ 283 (346)
T TIGR03576 226 SVGE-----------QFGLEAQAPLLAAVVRALEE---F--ELSRIRDAFKRKEEVYLRLFDK---LNVERTP---TGFV 283 (346)
T ss_pred Hhhc-----------CcccCccHHHHHHHHHHHhh---c--cHHHHHHHHHHHHHHHHHHHHh---CCCCcCC---CeEE
Confidence 1100 00011222233333444432 2 3355566777777777777763 3443322 4478
Q ss_pred EEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH---HHHHHHH
Q 012991 358 MVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE---DYEKFRD 434 (452)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~---di~~l~~ 434 (452)
++.++ ..+..+++..+.++.||.++++..+. ..++++|||++. ..+ +++++++
T Consensus 284 ~~~~~-------~~~~~~~~~~ll~~~gV~v~~~~~f~---------------~~~~~vRis~~~--~~~~~~~~~~~~~ 339 (346)
T TIGR03576 284 IKGVE-------EEKLIEIGLDLLRNYGIITITAVGMP---------------GASKTLRFDLAA--KDAERIGDDYLVE 339 (346)
T ss_pred EEeCC-------CCCHHHHHHHHHHhCCEEEeCCcccC---------------CCCCeEEEEEec--ChHHhcCHHHHHH
Confidence 88775 11233344444455799998654331 235799999984 332 7999999
Q ss_pred HHHHHH
Q 012991 435 AVILLV 440 (452)
Q Consensus 435 ~l~~~~ 440 (452)
+|++.+
T Consensus 340 al~~~~ 345 (346)
T TIGR03576 340 AVKDSL 345 (346)
T ss_pred HHHhcc
Confidence 998764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=206.06 Aligned_cols=310 Identities=13% Similarity=0.123 Sum_probs=207.9
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..+++++++++++|.+ .. +++++|++|+.+++.++ +++||+|+++.+.|.+....+...+..
T Consensus 57 Y~r~~~p~~~~le~~lA~l~g~~--~a-v~~~sG~~Ai~~al~al--------~~~Gd~Vl~~~~~y~~t~~~~~~~~~~ 125 (389)
T PRK05968 57 YSRGDNPTVRAFEEMLAKLEGAE--DA-RGFASGMAAISSTVLSF--------VEPGDRIVAVRHVYPDAFRLFETILKR 125 (389)
T ss_pred ccCCCChhHHHHHHHHHHHhCCC--cE-EEECCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHH
Confidence 44555566899999999999995 34 55677788999888765 589999999999999988777766778
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. ++ ++++++.+ +++++|++++++|+++.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 126 ~G~~v~~vd~----~d----~~~l~~~i-------~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi-~vivD~a~a~~ 189 (389)
T PRK05968 126 MGVEVDYVDG----RD----EEAVAKAL-------PGAKLLYLESPTSWVFELQDVAALAALAKRHGV-VTMIDNSWASP 189 (389)
T ss_pred cCceEEEeCC----CC----HHHHHHhc-------ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCC-EEEEECCCcch
Confidence 8999999842 22 57777776 357899999999999999999999999999999 89999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
...... .+++|+++.|++|++.|+.+ .|+++.+++++++ + ......+.| +..+ . ......+.
T Consensus 190 ~~~~p~-~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~-l-~~~~~~~~g----------~~~~--~-~~A~~~l~ 253 (389)
T PRK05968 190 VFQRPI-TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIAR-I-NAEAYPYLG----------AKLS--P-FEAWLLLR 253 (389)
T ss_pred hccCch-hcCCcEEEeeccccccCCCCeEEEEEEECHHHHHH-H-HHHHHHhCC----------CCCC--h-HHHHHHHc
Confidence 532222 35789999999999777654 5787777776654 1 111000111 1111 1 11111222
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc-CCCc---------ccccceEEEEcCCccccCChhhHHHHHHHHh
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL-GSPP---------EICAAMVMVGLPSRLRVMGEDDALRLRGHLR 381 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 381 (452)
.++ .+....++..+++..+.+.|++.++++. ..|. ...++++.|.++ ++.+..++++.|.
T Consensus 254 ~L~----tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~------~~~~~~~f~~~L~ 323 (389)
T PRK05968 254 GLR----TLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFR------EGIDVRAFADALK 323 (389)
T ss_pred ccC----cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEEC------CHHHHHHHHHhCC
Confidence 222 3455556667788999999999888753 3231 134679999885 2456788999995
Q ss_pred hhcceEeeecccCC----CCCCCCC---CCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 382 VRFGVEVPIHYQAP----KDDGQPQ---AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 382 ~~~gI~v~~~~~~~----~~~~~~~---~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
. +++.+..+.... ....+.. ...+++.+..++.+|+|++..++++=++.+-.+|+
T Consensus 324 ~-~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~ 385 (389)
T PRK05968 324 L-FRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALA 385 (389)
T ss_pred c-cEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence 4 588776544432 0000000 01111224557899999997654433444444443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=217.27 Aligned_cols=343 Identities=12% Similarity=0.103 Sum_probs=231.0
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC--CCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD--VGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~i~~t~g~t~a~~ 112 (452)
.+++++.|+.+... ++|+.+.+++.+.+.... . .++..+..+.+++++++.+|++. .++|++|+|+++++.
T Consensus 695 ~g~~vI~LsinE~d~ppPp~V~eAi~eal~~~~----~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~ 768 (1082)
T PLN02672 695 QESSLIHMDVDESFLPVPSAVKASIFESFVRQN----I--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFN 768 (1082)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHHHHHhhcC----C--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHH
Confidence 35689999988766 677889999887664321 1 11223456889999999989862 138999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
.++.++ +++||+|+++.|.|+.+...+ +..|.+++.+++. .++...+ .+.++++++ ..+.
T Consensus 769 lll~aL--------l~pGD~VLVp~PtY~~Y~~~a----~~~Ga~vv~Vpl~--~e~gf~lD~d~Le~al~-----~~~~ 829 (1082)
T PLN02672 769 KLVLCC--------VQEGGTLCFPAGSNGTYVSAA----KFLKANFRRIPTK--SSDGFKLTAKTLASTLE-----TVKK 829 (1082)
T ss_pred HHHHHH--------cCCCCEEEEeCCChHHHHHHH----HHcCCEEEEEecc--cccCCCCCHHHHHHHhc-----cCCC
Confidence 998877 589999999999999876665 4469999999652 1222334 788999884 2234
Q ss_pred EEEEEeccC-CCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---c---cccc----cc------CccEEEEcC
Q 012991 192 RLAIIDHIT-SMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---K---IDVK----EI------GADFYVSNL 251 (452)
Q Consensus 192 ~lv~~~~~~-n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~---~~~~----~~------~~d~~~~s~ 251 (452)
++|++++|+ ||||.+++ +++|+++|++||+ ++|+|++++.-.. + .++. .. ...+++.|+
T Consensus 830 ~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di-~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~Sf 908 (1082)
T PLN02672 830 PWVYISGPTINPTGLLYSNSEIEEILSVCAKYGA-RVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGL 908 (1082)
T ss_pred CEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCC-EEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCc
Confidence 578888897 99999997 4567888999999 7999999862111 0 1111 01 123577799
Q ss_pred cccCcCCCC--cEEEEEecC-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH----HhhcCHHHHH
Q 012991 252 HKWFFCPPS--VAFLYCRKS-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS----RFEGGIDGIM 324 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~~~~g~~~~~ 324 (452)
+|. ++.+| +|+++++++ ++.. +. .... ...+.....+++.+++.... .+....+..+
T Consensus 909 SKk-f~lpGLRIGylIap~~eLi~~-l~-~~~~-------------~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r 972 (1082)
T PLN02672 909 STE-LLSGGHEFGFLALNDSVLIDA-FH-SAPG-------------LSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQK 972 (1082)
T ss_pred HHh-hccHHHHheeEEeCCHHHHHH-HH-Hhhh-------------hcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 995 77777 899988654 5554 11 1100 01111122333333333221 0001345667
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc------cC-----ChhhHHHHHHHHhhhcceEeeeccc
Q 012991 325 QRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR------VM-----GEDDALRLRGHLRVRFGVEVPIHYQ 393 (452)
Q Consensus 325 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~l~~~L~~~~gI~v~~~~~ 393 (452)
+.++++++++.+.|.+. ++.+..|.+ +.++|+.++...+ .. .+.+..++++.|.++.||.+.++..
T Consensus 973 ~~Lk~rRd~L~e~L~~~-Gi~v~~PeG--GFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~ 1049 (1082)
T PLN02672 973 KILKSRAERLKETLEAC-GWDVLEPQG--GISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSW 1049 (1082)
T ss_pred HHHHHHHHHHHHHHHHC-CCeEecCCc--EEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcc
Confidence 77889999999999886 777665554 6677776532110 00 0246778999998767999987644
Q ss_pred CCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 394 APKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+ ..++++||+++. +.+++++.++.|+++.+
T Consensus 1050 F----------------G~~g~~RIsfa~--~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1050 T----------------GIPGYCRFSFAL--EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred c----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 3 235799999985 78899999999998764
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=205.39 Aligned_cols=307 Identities=14% Similarity=0.142 Sum_probs=204.1
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 75 FNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
.+...+...++++.+++++|++ .+++++||++|+..++.++ +++||+|+++.+.|.+....+..++.+.
T Consensus 49 ~r~~~p~~~~le~~la~l~g~~---~~~~~~sG~~Ai~~al~al--------~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~ 117 (380)
T TIGR01325 49 SRYANPTVAAFEERIAALEGAE---RAVATATGMSAIQAALMTL--------LQAGDHVVASRSLFGSTVGFISEILPRF 117 (380)
T ss_pred ecCCCchHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEecCCcchHHHHHHHHHHHh
Confidence 3334566899999999999984 5688999999999999876 4889999999999988777776667788
Q ss_pred CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC
Q 012991 155 GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS 234 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~ 234 (452)
|++++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|.++|+++|+ ++++|++++.+.
T Consensus 118 g~~v~~v~~----~d----~~~l~~~i------~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi-~livD~a~~~~~ 182 (380)
T TIGR01325 118 GIEVSFVDP----TD----LNAWEAAV------KPNTKLVFVETPSNPLGELVDIAALAELAHAIGA-LLVVDNVFATPV 182 (380)
T ss_pred CCEEEEECC----CC----HHHHHHhc------CCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCC-EEEEECCCcccc
Confidence 999999843 32 57788877 5689999999999999999999999999999999 899999987654
Q ss_pred ccccccccCccEEEEcCcccCcCCC-C-cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 235 IKIDVKEIGADFYVSNLHKWFFCPP-S-VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 235 ~~~~~~~~~~d~~~~s~~K~l~g~~-G-~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
....+ ..++|+++.|++|+++|+. . .|+++.++++++. +. .... .. |.... +. ....+++-
T Consensus 183 ~~~pl-~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~-l~-~~~~-~~-----------g~~~~-p~-~a~~~l~~ 245 (380)
T TIGR01325 183 LQQPL-KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAE-VA-VYLR-HT-----------GPAMS-PF-NAWVLLKG 245 (380)
T ss_pred cCCch-hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHH-HH-HHHH-hh-----------CCCCC-HH-HHHHHHhc
Confidence 32222 4578999999999865542 1 3777777766554 11 1100 00 11111 11 11222322
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHHHH
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRLR 377 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (452)
+. .++...++..+++.++.+.|++.++++ |..|. ...++++.|.++ +.....++.
T Consensus 246 l~----tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~------~~~~~~~f~ 315 (380)
T TIGR01325 246 LE----TLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA------DRAAAWKVL 315 (380)
T ss_pred cC----cHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC------CHHHHHHHH
Confidence 22 344456677888999999999887653 32221 124789999885 233456777
Q ss_pred HHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 378 GHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 378 ~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+.|. -..+.+..+... +....+.... ..+..+..++.+|+|++. ||.+.+++.|++.
T Consensus 316 ~~l~-~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~a 379 (380)
T TIGR01325 316 DAVE-LVSITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVGL----EDVDDLIADLKRA 379 (380)
T ss_pred HcCC-cceEcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHhh
Confidence 7773 234444332111 0000000000 011225567899999984 5666677766654
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=202.73 Aligned_cols=316 Identities=16% Similarity=0.102 Sum_probs=207.1
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C---CCCCCcEEEecCh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N---ADDVGEISLVDNA 107 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~---~~~~~~i~~t~g~ 107 (452)
.+..++.|+.+.+. +.++.+.+++...... . .|....+..++++++++++ | ++ +++|++|+|+
T Consensus 25 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~-------~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~-~~~I~it~G~ 95 (364)
T PRK07865 25 HPDGIVDLSVGTPVDPVPPVIQEALAAAADA-P-------GYPTTAGTPELREAIVGWLARRRGVTGLD-PAAVLPVIGS 95 (364)
T ss_pred cCCCEEEcCCCCCCCCCCHHHHHHHHHHHhh-C-------CCCCccCCHHHHHHHHHHHHHHcCCCCCC-cccEEEccCh
Confidence 34568899888654 4467677877654321 1 2222334556666777766 4 43 7899999999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccC
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKD 187 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 187 (452)
++++..++.++ .+++||+|++++|.|+++...+ ...|+++..+ + . .++ +.
T Consensus 96 ~~~i~~~~~~l-------~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~----~--~----~~~----l~----- 145 (364)
T PRK07865 96 KELVAWLPTLL-------GLGPGDVVVIPELAYPTYEVGA----RLAGATVVRA----D--S----LTE----LG----- 145 (364)
T ss_pred HHHHHHHHHHH-------cCCCCCEEEECCCCcccHHHHH----HhcCCEEEec----C--C----hhh----CC-----
Confidence 99999887765 2489999999999998875554 4458888776 2 1 122 21
Q ss_pred CCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc---ccc-cc------ccCccEEEEcCccc
Q 012991 188 GKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI---KID-VK------EIGADFYVSNLHKW 254 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~-~~------~~~~d~~~~s~~K~ 254 (452)
..++++|++++++||||.+++. ++|.++|+++|+ ++|+|++++.... +.. +. ..+-.+++.|++|.
T Consensus 146 ~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 224 (364)
T PRK07865 146 PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGA-VVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQ 224 (364)
T ss_pred cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC-EEEEecchhhhccCCCCCccccccccCCccceEEEEeechhc
Confidence 2578999999999999999885 577888999999 7999999864221 111 00 11234788899996
Q ss_pred CcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 255 l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
+|.+| +|+++.+++++.. + ...... .....+...+.++..+++.. ...+..++.++++++
T Consensus 225 -~~~~GlRiG~i~~~~~~~~~-~-~~~~~~-----------~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~ 286 (364)
T PRK07865 225 -SNLAGYRAGFVAGDPALVAE-L-LEVRKH-----------AGMMVPAPVQAAMVAALGDD----AHVREQRERYARRRA 286 (364)
T ss_pred -cCCCceeeEEEecCHHHHHH-H-HHHHHh-----------cCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHH
Confidence 65555 7898887777664 1 111000 00112222333333333221 135566777888888
Q ss_pred HHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 333 KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
.+.+.|.+. |+.+..++. +.++|+.++ .+..++.+.|.+ .||.+.++..+.. ..
T Consensus 287 ~l~~~L~~~-g~~~~~~~~--~~~~~~~~~--------~~~~~~~~~l~~-~gv~v~pg~~f~~--------------~~ 340 (364)
T PRK07865 287 VLRPALEAA-GFRVDHSEA--GLYLWATRG--------EDCWDTVAWLAE-RGILVAPGDFYGP--------------AG 340 (364)
T ss_pred HHHHHHHHc-CCcccCCCc--cEEEEEeCC--------CCHHHHHHHHHH-CCEEEeCccccCc--------------CC
Confidence 899999875 776655544 556777653 244567788865 5999976554321 23
Q ss_pred cceEEecccccCCHHHHHHHHHHHH
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
++++||+++. +++++++.++.|+
T Consensus 341 ~~~iRi~~~~--~~~~~~~~~~~l~ 363 (364)
T PRK07865 341 AQHVRVALTA--TDERIAAAVERLA 363 (364)
T ss_pred CCEEEEEecC--CHHHHHHHHHHhh
Confidence 5799999985 6899999998875
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=214.33 Aligned_cols=356 Identities=17% Similarity=0.187 Sum_probs=226.4
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEec-ChhHHHHH
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVD-NATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~-g~t~a~~~ 113 (452)
.+.++.|+. .+...++.+...+...-.-....|... -..+..+.+.++++++++++|.+ ++.+.. ||++|...
T Consensus 498 ~~~~i~lGs-ct~~~~p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d---~~sl~~~~ga~ge~a 573 (954)
T PRK05367 498 DRSMIPLGS-CTMKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYD---AVSLQPNAGAQGEYA 573 (954)
T ss_pred ccceeeCCc-CCCcCCHHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCC---CEEECccHHHHHHHH
Confidence 345677776 455444445444433221111112111 12345678899999999999995 455554 56666645
Q ss_pred HHHHhhcccccCCCCCC----CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 114 VLQQIGRGFTEGRFHRN----DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g----~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
.+.++ |.|. .++| ++|++++..|.++...+ ...|.+++.++ .+.++.+ +++|++.++.. .
T Consensus 574 gL~a~-r~~~---~~~G~~~r~~vlis~~aH~snp~sa----~~~G~~vv~v~----~d~~G~iD~~~L~~~i~~~---~ 638 (954)
T PRK05367 574 GLLAI-RAYH---ESRGEGHRDVCLIPSSAHGTNPASA----VMAGMKVVVVA----CDENGNIDLDDLRAKAEEH---A 638 (954)
T ss_pred HHHHH-HHHh---hccCCCCCCEEEEEchhhhhhHHHH----HHCCCEEEEEC----CCCCCCcCHHHHHHHHhcc---C
Confidence 55433 3221 1233 47999999999987775 44699999994 4445566 89999999632 2
Q ss_pred CceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc-ccccCccEEEEcCcccCcCCCC-----cE
Q 012991 189 KMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID-VKEIGADFYVSNLHKWFFCPPS-----VA 262 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~-~~~~~~d~~~~s~~K~l~g~~G-----~G 262 (452)
.++.+|+++++++..+...|+++|+++||++|+ ++++|+|+..+...+. ...+++|++++|+|||+++|.| +|
T Consensus 639 ~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~-~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G 717 (954)
T PRK05367 639 DNLAAIMITYPSTHGVFEETIREICEIVHEHGG-QVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVG 717 (954)
T ss_pred CCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCC-EEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceE
Confidence 468899999998863334799999999999999 7999999986655443 3467899999999999865554 67
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCcc---ccccHHHHHHHHHHhhcCHHHHHHHHH---HHHHHHHH
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYS---AQLVIPSAVTFVSRFEGGIDGIMQRNH---EQALKMAR 336 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~al~~~~~~~~g~~~~~~~~~---~~~~~l~~ 336 (452)
++++++.+... ++... -+... .....|+.... +...+..+..++..+ |.+.+++..+ .+++|+.+
T Consensus 718 ~l~vr~~l~p~--lpg~~---v~~~~--~~~~~g~v~ta~~g~al~~~~a~~yi~~~--G~~Glr~~a~~~~~~A~Yl~~ 788 (954)
T PRK05367 718 PIGVKAHLAPF--LPGHP---VQIAG--GETGIGAVSAAPFGSASILPISWMYIRMM--GAEGLRQATEVAILNANYIAK 788 (954)
T ss_pred EEeeccccccc--CCCCc---cCcCC--CCCCcCcchhHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHH
Confidence 99998655543 12111 00000 00001222211 122333345555555 6565555544 99999999
Q ss_pred HHHHHcCCCcCCCccc--ccceEEEE-cCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 337 MLANAWGTSLGSPPEI--CAAMVMVG-LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.|.+...+...++... ..+++.+. ++. ..+.+..++.+.|.+ +||..+..+.+ ..
T Consensus 789 ~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~----~~g~~~~di~krL~d-~G~~~~t~~~p-----------------v~ 846 (954)
T PRK05367 789 RLKDHYPVLYTGANGRVAHECILDLRPLKE----STGITVDDIAKRLID-YGFHAPTMSFP-----------------VA 846 (954)
T ss_pred HHHhhcCccccCCCCCcccceEEEeecccc----cCCCCHHHHHHHHHH-CCCeEeecCCc-----------------cC
Confidence 9987544443333221 13333332 221 123466889999955 69998764332 25
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
+.+|+++..+++.+|+|+++++|+.+.++-
T Consensus 847 ~~l~i~ptE~~s~~elDr~~~al~~i~~e~ 876 (954)
T PRK05367 847 GTLMVEPTESESKAELDRFCDAMIAIRAEI 876 (954)
T ss_pred CEEEEEeeecCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999887643
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=204.93 Aligned_cols=310 Identities=16% Similarity=0.197 Sum_probs=209.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..+++++++++++|.+ ..++++||++|+..++.++ +++||+|+++.+.|.+....+...+..
T Consensus 34 y~r~~~p~~~~le~~la~l~g~~---~a~~~~sG~~Ai~~~l~~l--------~~~gd~Vl~~~~~y~~~~~~~~~~~~~ 102 (369)
T cd00614 34 YSRIGNPTVDALEKKLAALEGGE---AALAFSSGMAAISTVLLAL--------LKAGDHVVASDDLYGGTYRLFERLLPK 102 (369)
T ss_pred eECCCChhHHHHHHHHHHHHCCC---CEEEEcCHHHHHHHHHHHH--------cCCCCEEEECCCCcchHHHHHHHHHhh
Confidence 44445677899999999999984 6677888999999999987 589999999999999988777766677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++..++ .++ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++++|++++.+
T Consensus 103 ~g~~~~~v~----~~d----~~~l~~~i------~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~-~livD~t~~~~ 167 (369)
T cd00614 103 LGIEVTFVD----PDD----PEALEAAI------KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGA-LLVVDNTFATP 167 (369)
T ss_pred cCeEEEEeC----CCC----HHHHHHhc------CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCC-EEEEECCCcch
Confidence 899999884 333 67888888 4689999999999999999999999999999999 89999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
... ....+++|+++.|++|+++|+.. .|+++.++ +++++ + ... ...+| +..+ + .....++
T Consensus 168 ~~~-~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~-l-~~~-~~~~g----------~~~~--p-~~a~~~l 230 (369)
T cd00614 168 YLQ-RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQR-L-RFL-RLALG----------TILS--P-FDAWLLL 230 (369)
T ss_pred hcC-ChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHH-H-HHH-HHhhC----------CCCC--H-HHHHHHH
Confidence 642 22235789999999998665432 58888877 55554 1 111 00011 1111 1 1112222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
+.++ .+....++..+++.++.+.|.+.+++. +..|. ...++++.|.++. +.....+
T Consensus 231 ~~l~----tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~-----~~~~~~~ 301 (369)
T cd00614 231 RGLK----TLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG-----GLEAAKK 301 (369)
T ss_pred cCCC----CHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC-----CHHHHHH
Confidence 2222 344556778889999999999887653 32331 1247899998851 2334556
Q ss_pred HHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 376 LRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.+.|. -+++....+... +....++.... ++..+..++.+|+|++. ||++.+++.|++.+
T Consensus 302 f~~~l~-~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al 368 (369)
T cd00614 302 FLNALK-LFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL 368 (369)
T ss_pred HHHcCC-cceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 666663 233333221110 11111111111 11224557899999985 67778888877664
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=202.06 Aligned_cols=315 Identities=16% Similarity=0.093 Sum_probs=205.4
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C---CCCCCcEEEecCh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N---ADDVGEISLVDNA 107 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~---~~~~~~i~~t~g~ 107 (452)
.++.++.|..+.+. +.++.+.+++.+.... . .|....+..++++++++++ | ++ +++|++|+|+
T Consensus 19 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~-------~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-~~~I~it~G~ 89 (357)
T TIGR03539 19 HPDGIVDLSVGTPVDPVPPLIRAALAAAADA-P-------GYPQTWGTPELREAIVDWLERRRGVPGLD-PTAVLPVIGT 89 (357)
T ss_pred CCCCeEEccCCCCCCCCCHHHHHHHHHHHhh-C-------CCCcccCCHHHHHHHHHHHHHhcCCCCCC-cCeEEEccCh
Confidence 45668888877553 5566678887764321 1 1222233445555666555 3 53 7899999999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccC
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKD 187 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 187 (452)
++++..++.++ ..++||.|++++|+|+++.... ...|.+++.+ + + .+ .+.
T Consensus 90 ~~~i~~~~~~l-------~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v----~--~----~~----~l~----- 139 (357)
T TIGR03539 90 KELVAWLPTLL-------GLGPGDTVVIPELAYPTYEVGA----LLAGATPVAA----D--D----PT----ELD----- 139 (357)
T ss_pred HHHHHHHHHHH-------cCCCCCEEEECCCCcHHHHHHH----HhcCCEEecc----C--C----hh----hcC-----
Confidence 99999988765 2489999999999998865443 4468887766 2 1 12 121
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC---cc---cccc----ccCccEEEEcCccc
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS---IK---IDVK----EIGADFYVSNLHKW 254 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~---~~---~~~~----~~~~d~~~~s~~K~ 254 (452)
..++++|++++++||||..++ +++|.++|+++|+ ++|+|+++..-. .+ ++.. ...-.+++.|++|.
T Consensus 140 ~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 218 (357)
T TIGR03539 140 PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGA-VVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKR 218 (357)
T ss_pred ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCe-EEEEecchhhhccCCCCccceecccCCCccccEEEEeccccc
Confidence 257899999999999999997 4568888999999 799999975311 11 1110 01124788899996
Q ss_pred CcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 255 l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
++.+| +|+++++++++.. + ...... ....++...+.++..+++... ..+.+++.++++++
T Consensus 219 -~~~~G~R~G~~i~~~~~~~~-~-~~~~~~-----------~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~ 280 (357)
T TIGR03539 219 -SNLAGYRAGFVAGDPALVAE-L-LTVRKH-----------AGLMVPAPVQAAMVAALGDDG----HVAEQKARYAARRA 280 (357)
T ss_pred -cCCCceeEEEEecCHHHHHH-H-HHHHhh-----------cccCCCHHHHHHHHHHcCCHH----HHHHHHHHHHHHHH
Confidence 56666 7888877776664 1 111000 001233333333333433211 35566777888888
Q ss_pred HHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 333 KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
.+.+.|.+. |+.+..+.+ +.++|+.++ .+..++.+.|.+ .||.+.++..+.. ..
T Consensus 281 ~~~~~L~~~-g~~~~~p~~--~~~~~~~~~--------~~~~~~~~~l~~-~gV~v~pg~~f~~--------------~~ 334 (357)
T TIGR03539 281 QLKPALEKA-GFRIDHSEA--GLYLWATRG--------EDAWDTVDRLAE-LGILVAPGDFYGP--------------AG 334 (357)
T ss_pred HHHHHHHHc-CCCCcCCCc--cEEEEEECC--------CCHHHHHHHHHh-CCEEECCccccCC--------------CC
Confidence 899999875 676655543 567777664 245678888865 5999976554321 23
Q ss_pred cceEEecccccCCHHHHHHHHHHH
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l 436 (452)
++++|+|++. +.++++++++.|
T Consensus 335 ~~~iRis~~~--~~~~i~~~~~~l 356 (357)
T TIGR03539 335 SQHVRVALTA--TDERIAAAVARL 356 (357)
T ss_pred CCeEEEEecC--CHHHHHHHHHhh
Confidence 5799999985 678898888776
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=199.13 Aligned_cols=309 Identities=13% Similarity=0.139 Sum_probs=209.4
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC---CCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN---ADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~i~~t~g~t~a~ 111 (452)
.+.+++.|+.+... +.|+.+.+++.+.+.... ...| . .....++|++++++++ ++ +++|++|+|+++++
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~---~~~Y--~-~~~~~~Lr~aia~~~~~~~~~-~~~i~it~Ga~~~i 89 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRRLNSDT---LRIY--Y-DSPDEELIEKILSYLDTDFLS-KNNVSVGNGADEII 89 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHHhhhhh---hhcC--C-CCChHHHHHHHHHHhCCCCCC-cceEEEcCCHHHHH
Confidence 45678899877665 567778888877653210 0111 1 1246789999999998 64 78999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
.+++.++ ++|++.+|+|+.....+ +..|.+++.+++ ++++.+ +.. .+ .++
T Consensus 90 ~~~~~~~------------d~v~v~~P~y~~~~~~~----~~~g~~~~~v~~----~~~~~~-~~~--~~-------~~~ 139 (335)
T PRK14808 90 YVMMLMF------------DRSVFFPPTYSCYRIFA----KAVGAKFLEVPL----TKDLRI-PEV--NV-------GEG 139 (335)
T ss_pred HHHHHHh------------CcEEECCCCHHHHHHHH----HHcCCeEEEecC----CCcCCC-Chh--Hc-------cCC
Confidence 9998854 57999999998865554 456999999954 322222 111 12 246
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC--cccc-ccccCccEEEEcCcccCcCCCC--cEEEEE
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS--IKID-VKEIGADFYVSNLHKWFFCPPS--VAFLYC 266 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~--~~~~-~~~~~~d~~~~s~~K~l~g~~G--~G~l~~ 266 (452)
+++++++|+||||.+++.+++.+++ ++++ ++|+|+++..-. .... .....--+++.|++|. +|.+| +|++++
T Consensus 140 ~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~-~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~-~~l~GlRvG~~v~ 216 (335)
T PRK14808 140 DVVFIPNPNNPTGHVFEREEIERIL-KTGA-FVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKA-FSLAAQRIGYVVS 216 (335)
T ss_pred CEEEEeCCCCCCCCCcCHHHHHHHH-hcCC-EEEEECchhhhcCCchHHHHHhCCCEEEEEechhh-ccCcccceEEEEe
Confidence 8999999999999999999999998 5799 799999975321 1111 1112234777899996 67666 899999
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
++++++. + ..... ..+.+...+.++..+++... -.++..+.+++.++.+.+.|.+. |+.+
T Consensus 217 ~~~~~~~-l-~~~~~-------------~~~~~~~~q~a~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~-g~~~ 276 (335)
T PRK14808 217 SEKFIDA-Y-NRVRL-------------PFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREM-GYRI 276 (335)
T ss_pred CHHHHHH-H-HHhcC-------------CCCCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHHC-CCEE
Confidence 8877765 2 11100 01122233333344443222 13444556667778888888876 6665
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
..+ . ++++|+.++ ..+..++.+.|.+ +||.|+.. ..++||+++ +.
T Consensus 277 ~~~-~--g~f~~~~l~-------~~~~~~~~~~l~~-~Gi~V~~~---------------------~~~~Risi~---~~ 321 (335)
T PRK14808 277 TDS-R--GNFVFIFME-------KEEKERLLEHLRA-KNIAVRSF---------------------REGVRITIG---KR 321 (335)
T ss_pred CCC-C--CeEEEEeCC-------CccHHHHHHHHHH-CCeEEEEC---------------------CCCeEEecC---CH
Confidence 544 2 678898886 2345678888876 59999731 147999998 78
Q ss_pred HHHHHHHHHHHHH
Q 012991 427 EDYEKFRDAVILL 439 (452)
Q Consensus 427 ~di~~l~~~l~~~ 439 (452)
++.++++++|+++
T Consensus 322 ~~~~~~~~~l~~~ 334 (335)
T PRK14808 322 EENDMILKELEVF 334 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999753
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=203.93 Aligned_cols=311 Identities=17% Similarity=0.172 Sum_probs=203.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+...++++++++++|.+ .. ++++||++|+.+++.++ +++||+|+++.+.|.+....+..+..+
T Consensus 55 Y~r~~~p~~~~Le~~lA~~~g~~--~~-i~~~sG~~Ai~~~l~al--------l~~Gd~Vl~~~~~y~~t~~~~~~~~~~ 123 (388)
T PRK07811 55 YARTGNPTRTALEEQLAALEGGA--YG-RAFSSGMAATDCLLRAV--------LRPGDHIVIPNDAYGGTFRLIDKVFTR 123 (388)
T ss_pred ccCCCCccHHHHHHHHHHHhCCC--ce-EEeCCHHHHHHHHHHHH--------hCCCCEEEEcCCCchHHHHHHHHhCcC
Confidence 34444566899999999999995 33 55567799999999987 589999999999999877776655556
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. .+ ++++++++ ++++++|++++++||+|.+.|+++|.++|+++|+ ++|+|++++.+
T Consensus 124 ~gi~~~~~d~----~d----~e~l~~~i------~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi-~lIvD~a~a~~ 188 (388)
T PRK07811 124 WGVEYTPVDL----SD----LDAVRAAI------TPRTKLIWVETPTNPLLSITDIAALAELAHDAGA-KVVVDNTFASP 188 (388)
T ss_pred CCeEEEEeCC----CC----HHHHHHhc------CcCCeEEEEECCCCCcceecCHHHHHHHHHHcCC-EEEEECCCCcc
Confidence 6888888742 22 68888888 5689999999999999999999999999999999 79999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
...... ..++|++++|++|+++|+.+ .|+++++++.+...+ . ...... +.... .. ....++.
T Consensus 189 ~~~~p~-~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~-~-~~~~~~-----------g~~~s-~~-~a~l~~~ 252 (388)
T PRK07811 189 YLQQPL-ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAF-A-FLQNGA-----------GAVPG-PF-DAYLTLR 252 (388)
T ss_pred ccCCch-hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHH-H-HHHHhc-----------CCCCC-HH-HHHHHHh
Confidence 643332 35789999999999776654 477777654332201 1 100000 11100 11 1112222
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
-++ .+....++..+++..+.+.|++.+++. |..|. ...++++.|.++. +...+.++
T Consensus 253 ~L~----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-----~~~~~~~f 323 (388)
T PRK07811 253 GLK----TLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG-----GEEAARDF 323 (388)
T ss_pred ccC----cHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC-----CHHHHHHH
Confidence 222 244455667788999999999887763 33331 1347899998851 12345667
Q ss_pred HHHHhhhcceEeeecccC-----CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQA-----PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|. -+.+.+..+... +....+.. ...+..+..++.||+|++. ||.+.+++.|++.++
T Consensus 324 ~~~l~-~~~~~~s~G~~~sl~~~~~~~~~~~-~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 387 (388)
T PRK07811 324 CARTK-VFTLAESLGGVESLIEHPSAMTHAS-TAGSQLEVPDDLVRLSVGI----EDVADLLADLEQALG 387 (388)
T ss_pred HHhCC-cceeeccCCCCcceEeCCcccCccc-CCHhhcCCCCCEEEEEeCC----CCHHHHHHHHHHHhh
Confidence 77763 234444322110 00000000 0011124557899999985 456666666666553
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=202.29 Aligned_cols=310 Identities=13% Similarity=0.137 Sum_probs=207.5
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+....+++.++++.|.+ .+++++||++|+..++.++ +++||+|+++++.|++....+......
T Consensus 44 Y~r~gnPt~~~lE~~lA~l~g~~---~~~~~~sG~~Ai~~al~al--------l~~GD~Vl~~~~~y~~t~~~~~~~~~~ 112 (377)
T TIGR01324 44 YGRRGTLTHFALQDAMCELEGGA---GCYLYPSGLAAVTNSILAF--------VKAGDHVLMVDSAYEPTRYFCDIVLKR 112 (377)
T ss_pred ccCCCCccHHHHHHHHHHHhCCC---cEEEECcHHHHHHHHHHHh--------cCCCCEEEEcCCCcHHHHHHHHHHHHh
Confidence 44444556788999999999984 7889999999999999887 589999999999998766554444566
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++..++ ... .+.+++.+ .+++++|++++++||+|.+.|+++|+++|+++|+ ++++|++|+.|
T Consensus 113 ~gi~v~~~d----~~~----~e~l~~~i------~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~-~livD~t~a~g 177 (377)
T TIGR01324 113 MGVDITYYD----PLI----GEDIATLI------QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGI-VIMIDNTWAAG 177 (377)
T ss_pred cCcEEEEEC----CCC----HHHHHHhc------CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCC-EEEEECCCccc
Confidence 789988883 222 26788888 5789999999999999999999999999999999 79999999998
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
... ....+++|+++.|++||++|..+ .|+++.+++..+. +. .. ...+|. ..+. ......++
T Consensus 178 ~~~-~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~-l~-~~-~~~~G~----------~l~p---~~a~~~~r 240 (377)
T TIGR01324 178 LLF-KPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQ-LR-EH-SYLMGQ----------MVDA---DDAYTTLR 240 (377)
T ss_pred ccc-CccccCceEEEecCceeccCCCCceEEEEEeCHHHHHH-HH-HH-HHHhCC----------CCCH---HHHHHHHh
Confidence 763 23356899999999999877654 4777777765543 11 01 000111 1111 11122233
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc--------------ccccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
-++. +..-.++.++++..+.+.|++.+.+ +++.|. ...++++.|.+++. +.....++
T Consensus 241 gl~t----l~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~----~~~~~~~~ 312 (377)
T TIGR01324 241 GLRT----LGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL----TQKQVHAF 312 (377)
T ss_pred hhhh----HHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC----CHHHHHHH
Confidence 3332 2333666778888899999988766 344441 13478899988510 12346678
Q ss_pred HHHHhhhcceEeeecccCCCCCCCCCC--CC---CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQAPKDDGQPQA--GA---RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~~~~~~~~~~--~~---~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|. .+++.+..+....- ..+.. .. +...+..++.+|+|++. ||.+.+++.|.+.++
T Consensus 313 ~~~l~-~~~~~~slG~~~sl--~~~~~~~~~~~~~~~~~~~~~liR~svGl----E~~~dl~~dl~~al~ 375 (377)
T TIGR01324 313 LDHLQ-LFGLGYSWGGYESL--ALCNQPELGHRPNIKRNLEGPLIRVHIGL----ENVDDLKADLKAGFE 375 (377)
T ss_pred HHhCC-cceEeccCCCccce--eecCCCCCCHHHHHhccCCCCEEEEEeCC----CCHHHHHHHHHHHHh
Confidence 88884 35676644322100 00000 00 01113345799999985 455666666665553
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=185.47 Aligned_cols=348 Identities=14% Similarity=0.094 Sum_probs=240.3
Q ss_pred CCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCCcEEEecCh
Q 012991 38 HGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVGEISLVDNA 107 (452)
Q Consensus 38 ~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~i~~t~g~ 107 (452)
+.++.|..|.++ ++...+.+|+.+.+..- ...+|.+..+...+|+++|++++-+ ..+.|++|+|.
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 478899887765 35566777777766431 2245777888999999999997632 36799999999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
++|+.+++.+|+ +||..|++++|.|+-. ... |...|.+++.+++ =++.+..+ ++.+|+.+
T Consensus 136 ~qAIe~~i~~LA--------~p~aNILlPrPGfp~Y-~~~---a~~~~lEVR~ydl--LPe~~weIDL~~veal~----- 196 (447)
T KOG0259|consen 136 SQAIELAISSLA--------NPGANILLPRPGFPLY-DTR---AIYSGLEVRYYDL--LPEKDWEIDLDGVEALA----- 196 (447)
T ss_pred hHHHHHHHHHhc--------CCCCceecCCCCCchH-HHh---hhhcCceeEeecc--cCcccceechHHHHHhh-----
Confidence 999999999984 8999999999999854 333 5667999999976 22344555 99999999
Q ss_pred CCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEeccccc---CCccc----cccccCccEEEEcCcccCc
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAM---GSIKI----DVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~---g~~~~----~~~~~~~d~~~~s~~K~l~ 256 (452)
.++|.++++.+|+||.|.+++ +++|+++|+++++ ++|.|+++.. |..++ .+...-+.+...+.+|. +
T Consensus 197 -DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi-~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKr-W 273 (447)
T KOG0259|consen 197 -DENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGI-MVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKR-W 273 (447)
T ss_pred -ccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCC-eEEehhhcceeecCCCCccchhhccccCceEeecccccc-c
Confidence 789999999999999999997 7799999999999 8999998753 22222 12223355666789996 5
Q ss_pred CCCC--cEEEEEec--CccccCCCCCceeccCCCCccccc-ccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRK--SILSSDMHHPVVSHEFGNGLPIES-AWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 257 g~~G--~G~l~~~~--~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
--+| +|++...+ ..+.. ...- .+ ..+. .....|....+.|+...++.-.+ +-++....-++.++
T Consensus 274 ~VPGWRlGWi~~hD~~gvf~~----~~~~--q~---~~~~~~~~~~p~TiiQ~AlP~IL~kTp~--efF~k~~~~lk~na 342 (447)
T KOG0259|consen 274 IVPGWRLGWIALHDPRGVFRD----TKVV--QG---IKNFLDIIPGPATIIQGALPDILEKTPE--EFFDKKLSFLKSNA 342 (447)
T ss_pred ccCCceeeeEEEecccccccc----hHHH--HH---HHHHHhccCCccHhHHHHhHHHHHhChH--HHHHHHHHHHHhhH
Confidence 5556 78887753 22221 1000 00 0000 01122333333333333332221 24666677788899
Q ss_pred HHHHHHHHHHcCCC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 332 ~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
+..++.|.++|++. ...|++ ..++++.+..+... +-.+..++++.|.++..+.+-++..+
T Consensus 343 ~l~y~~Lk~IP~l~cp~kPeg--~mylmv~l~~s~~~-~~~dD~dFc~kL~~Eesv~~LPG~af---------------- 403 (447)
T KOG0259|consen 343 DLCYSRLKDIPCLTCPVKPEG--CMYLMVKLNLSLFP-DIEDDVDFCQKLAREESVICLPGQAF---------------- 403 (447)
T ss_pred HHHHHHHhcCCCcccCcCCCc--ceEEEeccchhhhc-cccccHHHHHHHhhhcceEEeccccc----------------
Confidence 99999999999987 444544 56777766422111 12244578888886667776544443
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
..++|+|+++.. ..+.++..+++|+++.++-+
T Consensus 404 ~~~nw~Ri~i~~--~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 404 GLKNWLRIVITV--EEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred cCCCeEEEEEcc--ChHHHHHHHHHHHHHHHhhh
Confidence 457899999985 67889999999999987644
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=202.12 Aligned_cols=312 Identities=13% Similarity=0.098 Sum_probs=201.8
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+....++++++++.+. +.+++++||++|+..++.++ +++||+|+++++.|.+....+.....+
T Consensus 55 Y~r~~npt~~~Le~~iA~le~~---~~~~~~~sG~~Ai~~~l~al--------l~~GD~Vvv~~~~Y~~t~~l~~~~l~~ 123 (394)
T PRK09028 55 YGRRGTPTHFAFQAAIVELEGG---AGTALYPSGAAAISNALLSF--------LKAGDHLLMVDSCYEPTRDLCDKILKG 123 (394)
T ss_pred ecCCCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHH--------hCCCCEEEEECCCcHHHHHHHHHhhhh
Confidence 4443344567899999999876 47889999999999999877 589999999999998876655444466
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++..++ .++ .+.+++++ .++|++|++++|+||+|.+.|+++|+++||++|+ ++++|++++.+
T Consensus 124 ~Gi~v~~v~----~~~----~e~l~~~l------~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~-~lvvD~t~a~p 188 (394)
T PRK09028 124 FGIETTYYD----PMI----GEGIRELI------RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDI-VVMLDNTWASP 188 (394)
T ss_pred cceEEEEEC----CCC----HHHHHHhc------CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCC-EEEEECCcccc
Confidence 799988873 222 36678888 5789999999999999999999999999999999 79999999887
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
.. .+...+|+|+++.|.+||++|+.. .|+++.+++.... +. .. .. ..|.. .+-..+.-
T Consensus 189 ~~-~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~-l~-~~-~~-----------~~G~~-----~~p~~a~l 248 (394)
T PRK09028 189 IN-SRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQ-LR-EH-SY-----------LMGQC-----TSPDDVYL 248 (394)
T ss_pred cc-CCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHH-HH-HH-HH-----------hcCCC-----CCHHHHHH
Confidence 53 333456999999999999877754 4555555544332 10 00 00 01211 11112222
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc--------------ccccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
.++.+ +.+.--.++..+++..+.+.|++.|.+ +|..|. ...++++.|.++.. +.....++
T Consensus 249 ~~rgl-~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~----~~~~~~~f 323 (394)
T PRK09028 249 AMRGL-RTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQG----DPKAVTAL 323 (394)
T ss_pred HHccc-CcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCC----CHHHHHHH
Confidence 22210 134555677788999999999998776 344441 12478999988510 12345567
Q ss_pred HHHHhhhcceEeeecccCC-CCCCC--CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQAP-KDDGQ--PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~~-~~~~~--~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|. -+.+.+..+.... -.... ......+..+..++.||+|++. ||.+.+++.|.+.++
T Consensus 324 ~~~l~-l~~~~~slG~~~sLv~~p~~~~~~~~~~~~~~~~~liR~svGl----Ed~~dLi~Dl~~Al~ 386 (394)
T PRK09028 324 VEGMQ-HFKMGFSWGGFESLILGVFGINKLRTATNWDFSKPLIRLHIGL----EDVDDLIADLEAGFE 386 (394)
T ss_pred HHhCC-cceEecccCCCcceeECCCCcCccCchhhhcCCCCeEEEEeCc----CCHHHHHHHHHHHHH
Confidence 77763 2344443321110 00000 0000011113345799999985 445555555555554
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=204.74 Aligned_cols=312 Identities=16% Similarity=0.180 Sum_probs=208.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..+.++++++++.+.+ .+++++||++|+.+++. + +++||+|+++++.|.+....+.....+
T Consensus 127 Y~r~gnpt~~aLE~~lA~leg~e---~ai~~~SG~aAi~~il~-l--------l~~GD~VI~~~~~y~~t~~ll~~~l~~ 194 (464)
T PLN02509 127 YTRSGNPTRDALESLLAKLDKAD---RAFCFTSGMAALSAVTH-L--------IKNGEEIVAGDDVYGGSDRLLSQVVPR 194 (464)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCC---EEEEeCcHHHHHHHHHH-H--------hCCCCEEEEcCCchhhHHHHHHHHHHH
Confidence 43333456899999999998874 56777888888876554 3 489999999999999887676655677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++ ..+ .+++++++ ++++++|++++++||+|.+.|+++|+++|+++|+ ++++|++++.+
T Consensus 195 ~G~~v~~vd----~~d----~e~l~~ai------~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~-~lIVD~A~a~~ 259 (464)
T PLN02509 195 SGVVVKRVN----TTN----LDEVAAAI------GPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGA-LVLVDNSIMSP 259 (464)
T ss_pred CCeEEEEeC----CCC----HHHHHHhC------CcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCC-EEEEECCcccc
Confidence 899999883 222 57788888 5789999999999999999999999999999999 89999999887
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
...... ..++|++++|++||+.|+.+ .|+++++++.+...+ . ...... ++. .+-...+.++.
T Consensus 260 ~~~~pl-~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~-~-~~~~~~-----------g~~--l~p~~A~l~lr 323 (464)
T PLN02509 260 VLSRPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV-Y-FLQNSE-----------GSG--LAPFDCWLCLR 323 (464)
T ss_pred ccCChh-hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHH-H-HHHHhc-----------CCC--cCHHHHHHHHh
Confidence 653332 35799999999999887665 578877655432201 0 000000 110 01111222333
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
-++ .++...++..+++.++.+.|.+.|.++ |..|. ...++++.|.+. +...+..+
T Consensus 324 ~L~----tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~------~~~~~~~f 393 (464)
T PLN02509 324 GIK----TMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG------SVALSKHL 393 (464)
T ss_pred hhh----hHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeC------CHHHHHHH
Confidence 333 244556777899999999999988763 44431 124778888773 23345677
Q ss_pred HHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 377 RGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.+.|. -+.+.+..+... +....+.... .+++.+..++.||+|++ .||++.+++.|++.++.+
T Consensus 394 ~~~l~-l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvG----lE~~~DLi~Dl~~Al~~~ 462 (464)
T PLN02509 394 VETTK-YFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG----IEDVDDLISDLDIAFRTG 462 (464)
T ss_pred HHcCC-cceEcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHccc
Confidence 77773 344444332211 0000000000 01122456789999998 467888888888887654
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=202.52 Aligned_cols=310 Identities=16% Similarity=0.181 Sum_probs=201.0
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..++++++++++.|.+ +. ++++||++|+.+++.++ +++||+|+++.+.|.+....+..++..
T Consensus 54 y~R~~~p~~~~Le~~lA~l~g~~--~~-v~~~sG~~Ai~~~l~al--------l~pGD~Vvv~~p~Y~~t~~~~~~~~~~ 122 (405)
T PRK08776 54 YTRSGNPTRDLLGEALAELEGGA--GG-VITATGMGAINLVLNAL--------LQPGDTLVVPHDAYGGSWRLFNALAKK 122 (405)
T ss_pred ccCCCChHHHHHHHHHHHHhCCC--ce-EEEcCHHHHHHHHHHHH--------hCCCCEEEEccCCchHHHHHHHHHHHh
Confidence 44455566788999999999984 44 56677789999999876 589999999999999877777766677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|.++..++ ..+ .+++++.+ .+++++|++++++||+|.+.++++|+++|+++|+ ++++|++++.+
T Consensus 123 ~g~~v~~v~----~~d----~~~l~~~i------~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi-~vIvD~a~a~~ 187 (405)
T PRK08776 123 GHFALITAD----LTD----PRSLADAL------AQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGA-LTVVDNTFLSP 187 (405)
T ss_pred cCcEEEEEC----CCC----HHHHHHhc------CcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 788888884 222 57788888 4689999999999999999999999999999999 89999999876
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
.....+ .+++|++++|++|+++|+.+ .|+++.++ ++.++ +. .. ....| ...+. ......+
T Consensus 188 ~~~~pl-~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~-l~-~~-~~~~g----------~~~s~---~~a~l~~ 250 (405)
T PRK08776 188 ALQKPL-EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQ-LV-WW-ANALG----------LTGSP---FDAFLTL 250 (405)
T ss_pred ccCCcc-cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHH-HH-HH-HHhcC----------CCCCH---HHHHHHH
Confidence 542222 35899999999999777654 47666654 33332 11 00 00000 11111 1112222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
.-++ -++...++..+++..+.+.|++.+.+. |..|. ...++++.|.+.. +.....+
T Consensus 251 ~gl~----tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-----~~~~~~~ 321 (405)
T PRK08776 251 RGLR----TLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG-----GEAAVRA 321 (405)
T ss_pred hhhC----cHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC-----CHHHHHH
Confidence 2222 345567778889999999999887653 43331 1347899998851 1223456
Q ss_pred HHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 376 LRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.+.|. -+.+.+..+... +....+..... ++..+..++.||+|++.- |++.+++.|++.+
T Consensus 322 f~~~l~-l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGlE----~~~dli~dl~~al 388 (405)
T PRK08776 322 FVDGLR-YFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIE----SAEDLLIDLRAGL 388 (405)
T ss_pred HHHhCC-cceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHH
Confidence 777763 234443222110 00000111110 112255678999999863 3444444444444
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=201.33 Aligned_cols=329 Identities=15% Similarity=0.179 Sum_probs=210.2
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++.++++.|.. ..++|+|||+|+++++.++ +++||+||++..+|.+....+.....+
T Consensus 58 y~R~~~p~~~~le~~lA~l~g~~---~av~~sSGt~Al~~al~~l--------l~~Gd~Vi~~~~~y~~t~~~~~~~l~~ 126 (433)
T PRK08134 58 YSRISNPTVAVLEERVAALEGGV---GAIATASGQAALHLAIATL--------MGAGSHIVASSALYGGSHNLLHYTLRR 126 (433)
T ss_pred eecCcChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCccHHHHHHHHHHHhh
Confidence 44444567899999999999985 4689999999999999876 488999999999999887777665577
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++++++ ++ +++++++| +++|++|++++++||+|.+.|+++|+++|+++|+ ++++|++++.|
T Consensus 127 ~Gi~v~~vd~----~d----~~~l~~~i------~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi-~livD~t~a~~ 191 (433)
T PRK08134 127 FGIETTFVKP----GD----IDGWRAAI------RPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGV-PLLVDSTFTTP 191 (433)
T ss_pred CCeEEEEECC----CC----HHHHHHhc------CCCCeEEEEECCCcccCcccCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 32 68899999 6889999999999999999999999999999999 89999999988
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEe-cCcccc------CCCCCceeccCCCCccc---------ccccc
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR-KSILSS------DMHHPVVSHEFGNGLPI---------ESAWI 295 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~-~~~~~~------~l~~~~~~~~~~~~~~~---------~~~~~ 295 (452)
....+. .+++|++++|.|||+ +++| +|.+++. ...... .+..+...+ .+..... .....
T Consensus 192 ~~~~pl-~~GaD~vv~S~tK~l-~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 268 (433)
T PRK08134 192 YLLRPF-EHGADLVYHSATKFL-GGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGF-HGMVFAEESTVAAFLLRARRE 268 (433)
T ss_pred ccCCch-hcCCCEEEecccccc-CCCCCceEEEEEecCccccccccccccccCCcccc-cccchhhccchhHHHHHHHHH
Confidence 775544 678999999999985 5555 4555443 221100 011111100 0000000 00000
Q ss_pred cccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc---------------ccccceEEE
Q 012991 296 GTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP---------------EICAAMVMV 359 (452)
Q Consensus 296 ~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~~~~~ 359 (452)
+........+...|...+..+ +.+....++..+++..+.+.|++.+.+. |..|. ...++++.|
T Consensus 269 ~~~~~G~~ls~~~A~l~~~gL-~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~ 347 (433)
T PRK08134 269 GLRDFGACLSPMNAWQLLQGI-ETLPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSF 347 (433)
T ss_pred HHHhcCCCCCHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEE
Confidence 111111122223333333321 2456667777888999999999887663 33321 124788999
Q ss_pred EcCCccccCChhhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHH
Q 012991 360 GLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l 432 (452)
.++. +...+.++.+.|. -+.+.+..+... +....+.... .+++.+..++.||+|++. ||.+.+
T Consensus 348 ~l~~-----~~~~~~~f~~~l~-l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl----E~~~dl 417 (433)
T PRK08134 348 DLKG-----GRAAGRKFIESLK-LFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGL----EDADDL 417 (433)
T ss_pred EecC-----CHHHHHHHHHhCC-cceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHH
Confidence 8851 1234567777773 234333221110 0000000000 011235667899999985 445555
Q ss_pred HHHHHHHHhc
Q 012991 433 RDAVILLVEE 442 (452)
Q Consensus 433 ~~~l~~~~~~ 442 (452)
++.|.+.++.
T Consensus 418 i~dl~~Al~~ 427 (433)
T PRK08134 418 IDDLKRALKA 427 (433)
T ss_pred HHHHHHHHHh
Confidence 5555555543
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-23 Score=187.10 Aligned_cols=357 Identities=13% Similarity=0.116 Sum_probs=255.7
Q ss_pred CCHHHHHhhhccC--------CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHHHHHHhHh
Q 012991 24 ISEAEIRDEFSHH--------QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDD-FYFNSLRKGILESRAAVKDLI 93 (452)
Q Consensus 24 ~~~~~ir~~~~~~--------~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~ 93 (452)
.+++.+.++||.- .+-.+|+.+...+ ...+.|.+++.+.+.......+. .+-.+....-.++++.+|++.
T Consensus 150 k~vNRlA~~fP~A~~~se~t~k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LH 229 (570)
T KOG1360|consen 150 KNVNRLAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLH 229 (570)
T ss_pred HHHhHhhhhccchhhccccccCceEEEecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHh
Confidence 3466777788851 1235577766666 44455999999998876433222 122333445678999999999
Q ss_pred CCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 94 NADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 94 ~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
+-+ ..++| ++.--|+...+.+|++ .-||-+|+.+...|.|...+++. .++.-..+ ..++
T Consensus 230 qK~--aALlF-sSCfVANDstLftLak------~lpgcei~SD~gNHASMI~GIrn----s~v~K~IF----rHND---- 288 (570)
T KOG1360|consen 230 QKE--AALLF-SSCFVANDSTLFTLAK------KLPGCEIFSDEGNHASMIQGIRN----SRVPKHIF----RHND---- 288 (570)
T ss_pred cCc--ceeee-eeeeeccchHHHHHHH------HCCCcEEeccccchHHHHHHhhh----cCCcceee----ccCC----
Confidence 875 44444 4555677777888864 34788899999999998888754 35544444 4444
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc--------cccccCcc
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI--------DVKEIGAD 245 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~--------~~~~~~~d 245 (452)
++.|++.+++.. ...||+|.|+..++++|.++|+++|.+++++||+ +.++|++|+.|.... |-.-...|
T Consensus 289 ~~hL~~lL~~~~--~svPKivAFEtVhSM~GavcpleelcDvah~yGA-iTFlDEVHAVGlYG~rGaGvgerdGvm~kvD 365 (570)
T KOG1360|consen 289 LDHLEQLLQSSP--KSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGA-ITFLDEVHAVGLYGPRGAGVGERDGVMHKVD 365 (570)
T ss_pred HHHHHHHHHhCC--CCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCc-eeeeehhhhhccccCCCCCccccCCcchhhh
Confidence 788888887653 3568999999999999999999999999999999 899999998876421 11112479
Q ss_pred EEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHH
Q 012991 246 FYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQ 325 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~ 325 (452)
++++++.|. +|-.| |++.....+++. +..+ .. .+.++.+.+..-+.+..++++.+.. ++| ..+++
T Consensus 366 iIsGTLgKa-fGcVG-GYIAat~~LvDm--iRSy-----Aa----GFIFTTSLPP~vl~GAleaVr~lk~-~eg-~~lR~ 430 (570)
T KOG1360|consen 366 IISGTLGKA-FGCVG-GYIAATRKLVDM--IRSY-----AA----GFIFTTSLPPMVLAGALEAVRILKS-EEG-RVLRR 430 (570)
T ss_pred hcccchhhh-ccccc-ceehhhhhHHHH--HHHh-----cC----ceEEecCCChHHHHhHHHHHHHHhh-hhh-HHHHH
Confidence 999999997 77776 888888888874 2222 11 1223344444455666778888875 234 45666
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCC
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGA 405 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~ 405 (452)
..+++..++++.|.++ |+.+...+ +.++-+.+. +..-+.++++.|..++||++.....+..
T Consensus 431 ~hqrnv~~~kq~l~~~-GiPVi~~p---SHIiPv~vg------da~l~~~~sd~Li~~h~iYvQaINyPTV--------- 491 (570)
T KOG1360|consen 431 QHQRNVKYVKQLLMEL-GIPVIPNP---SHIIPVRVG------DAALAKQASDILISKHNIYVQAINYPTV--------- 491 (570)
T ss_pred HHHHHHHHHHHHHHHc-CCcccCCC---cceeeeecc------CHHHHHHHHHHHHHhcCeEEEeccCCcc---------
Confidence 6788999999999887 88765444 347666664 3456678999999999999977655533
Q ss_pred CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 406 RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 406 ~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+...+||.+..++|++-++.+++.|..+..+
T Consensus 492 ----~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~ 524 (570)
T KOG1360|consen 492 ----ARGTERLRIAPTPHHTPQMMNILVNALLDVWNE 524 (570)
T ss_pred ----cccceeeecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 245668999999999999999999999888764
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-23 Score=197.91 Aligned_cols=311 Identities=14% Similarity=0.141 Sum_probs=205.5
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
+...++|+.+.+. +.|+.+.+++.+.+... .... |. ..+..++|++++++++++ +++|++|+|+++++..++
T Consensus 17 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--Y~-~~g~~~lr~~ia~~~~~~-~~~I~~t~G~~~~l~~~~ 89 (337)
T PRK03967 17 GNYRIWLDKNENPFDLPEELKEEIFEELKRV---PFNR--YP-HITSDPLREAIAEFYGLD-AENIAVGNGSDELISYLV 89 (337)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHhhcC---cccc--CC-CCCHHHHHHHHHHHhCcC-cceEEEcCCHHHHHHHHH
Confidence 3467899888766 56677888887765321 1111 22 235788999999999986 799999999999998877
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.+ + +||+|+++.|.|...... ++..|.+++.+++ +++..+ ++.+++.+ .+++++
T Consensus 90 ~~---------~-~gd~V~v~~P~y~~~~~~----~~~~g~~~~~v~~----~~~~~~d~~~l~~~~-------~~~~~v 144 (337)
T PRK03967 90 KL---------F-EGKHIVITPPTFGMYSFY----AKLNGIPVIDVPL----KEDFTIDGERIAEKA-------KNASAV 144 (337)
T ss_pred HH---------h-CCCeEEEeCCChHHHHHH----HHHcCCeEEEeec----CCCCCcCHHHHHHhc-------cCCCEE
Confidence 63 2 689999999999754332 4567999999965 223334 67777654 467899
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-c-cc-ccccCccEEEEcCcccCcCCCC--cEEEEEecC
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-K-ID-VKEIGADFYVSNLHKWFFCPPS--VAFLYCRKS 269 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~-~~-~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~ 269 (452)
++++|+||||.+++.++|.++++ +++ ++|+|++++.... . .. .....-.+++.|++|. +|.+| +|+++++++
T Consensus 145 ~~~~P~NPtG~~~~~~~l~~i~~-~~~-~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~-~~l~GlRiG~iv~~~~ 221 (337)
T PRK03967 145 FICSPNNPTGNLQPEEEILKVLE-TGK-PVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKA-FGLAGIRAGYAIANEE 221 (337)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHh-cCC-EEEEECchhhhcccchHHHHhhCCCEEEEecchHh-hcchhhhheeeecCHH
Confidence 99999999999999999999995 699 7999999863211 0 01 1111224677899996 67666 899999887
Q ss_pred ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 270 ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
+++. +. .... ..+.+...+.++..+++... -..+.+++..+.++.+.+.|.+. ..+
T Consensus 222 ~i~~-~~-~~~~-------------~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~-----~~~ 277 (337)
T PRK03967 222 IIDA-LY-RIKP-------------PFSLNILTMKIVRLALDHYD----LIEERIDYIIKERERVRRELGEY-----AYP 277 (337)
T ss_pred HHHH-HH-hhcC-------------CCCCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHhccC-----cCC
Confidence 7765 21 1100 01222233333333332211 12223334455556666666542 123
Q ss_pred cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 350 PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
++ ++++|+.+ .+.+.|.++ ||.++.... ...+++|++++ +.++.
T Consensus 278 ~~--~~~~~~~~-------------~~~~~l~~~-gi~v~~~~~-----------------~~~~~~Ri~~~---~~~~~ 321 (337)
T PRK03967 278 SD--ANFLLLKL-------------DAYDYLLEN-GIVVRKLSG-----------------RLEGHIRVTVG---KREEN 321 (337)
T ss_pred CC--CcEEEEhH-------------HHHHHHHHC-CEEEEeCCC-----------------CCCCeEEEecC---CHHHH
Confidence 32 66777643 166777664 999974321 23469999998 78889
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
++++++|+++.+.
T Consensus 322 ~~l~~~l~~~~~~ 334 (337)
T PRK03967 322 DEFIKALKEIKEG 334 (337)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=203.36 Aligned_cols=312 Identities=16% Similarity=0.182 Sum_probs=204.8
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++++++++|.+ ..++++||++|+..++.++ +++||+|+++.+.|.+....+..++..
T Consensus 58 y~r~~~p~~~~le~~lA~l~g~~---~~i~~ssG~~Ai~~~l~al--------l~~GD~Vi~~~~~y~~~~~~~~~~~~~ 126 (398)
T PRK08249 58 YSRNTNPTVQAFEEKVRILEGAE---AATAFSTGMAAISNTLYTF--------LKPGDRVVSIKDTYGGTNKIFTEFLPR 126 (398)
T ss_pred ccCCCChHHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh--------cCCCCEEEEcCCchHHHHHHHHHHHhh
Confidence 55566778899999999999984 4677788889999998876 589999999999999887777665677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++..++ ..+ ++++++++ .+++++|++++++||+|.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 127 ~Gi~v~~vd----~~d----~e~l~~~i------~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi-~livD~t~a~~ 191 (398)
T PRK08249 127 MGVDVTLCE----TGD----HEQIEAEI------AKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGA-LVVVDNTFATP 191 (398)
T ss_pred CCeEEEEcC----CCC----HHHHHHhc------CCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCC-EEEEECCcCcc
Confidence 899988873 222 68888888 5789999999999999999999999999999999 89999999866
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
...... ..++|+++.|++|+++|+.. .|+++.++++++. + .... . ..+.. .+......+++
T Consensus 192 ~~~~~l-~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~-l-~~~~-~-----------~~g~~--~s~~~a~l~l~ 254 (398)
T PRK08249 192 INQNPL-ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQ-V-YHYR-E-----------INGAT--MDPMSAYLILR 254 (398)
T ss_pred ccCCch-hhCCCEEeccCceecCCCCCceEEEEECCHHHHHH-H-HHHH-H-----------hcCCC--CCHHHHHHHHh
Confidence 532222 35789999999998654331 3666666665553 1 1110 0 00111 11111122233
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
-++ .+....++..+++..+.+.|++.+.++ |..|. ...++++.|.++. +...+.++
T Consensus 255 ~l~----tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~-----~~~~~~~f 325 (398)
T PRK08249 255 GMK----TLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG-----GMDTVKRL 325 (398)
T ss_pred Ccc----hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC-----CHHHHHHH
Confidence 333 234445667888999999999877653 43331 1347899998851 12235567
Q ss_pred HHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 377 RGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.|. -+.+.+..+... +....+.... .++..+..++.+|+|++. ||++.+++.|.+.++.
T Consensus 326 ~~~l~-l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~ 393 (398)
T PRK08249 326 LPKLR-YAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGI----EDTEDLIADLEQAFAH 393 (398)
T ss_pred HHhCC-cceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHH
Confidence 67763 234443222110 0000000000 011225567899999985 5566666666666643
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=201.80 Aligned_cols=311 Identities=17% Similarity=0.228 Sum_probs=199.2
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++++++++|++ ..+++ +||++|+..++.++ +++||+|+++.+.|...+..+...++.
T Consensus 39 y~r~~~p~~~~L~~~lA~l~g~~--~~v~~-~sG~~ai~~~l~al--------~~~Gd~Vl~~~~~~~~ty~~~~~~~~~ 107 (376)
T PRK06460 39 YSREANPTVLELTKKIVELENAE--MGVAF-SSGMGAISTTALAL--------LKPGNSVLVHRDMFGRSYRFFTDYLKN 107 (376)
T ss_pred eeCCCCccHHHHHHHHHHHhCCC--cEEEe-CCHHHHHHHHHHHH--------hCCCCEEEEecCCcCcHHHHHHHHHHh
Confidence 55666778899999999999995 45544 66678999988876 589999999988887666666666777
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++..++ .++. +.+++.+ .+++++|++++++||+|.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 108 ~G~~v~~~~----~~~~----~~l~~~~------~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~-~vivDea~~~~ 172 (376)
T PRK06460 108 WGVNVDASN----PGSD----NIIEKAK------SKRYDVVFVENITNPLLRVVDITELSKVCKENGS-ILIVDATFSTP 172 (376)
T ss_pred hCcEEEEEC----CCCH----HHHHHhc------CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCC-EEEEECCcCcc
Confidence 899998884 3332 2344444 4689999999999999999999999999999999 89999998765
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
...... ..++|+++.|++|++.|..+ .|+++.++++++. +. .. ...+ +.. ..+. ....+++
T Consensus 173 ~~~~~l-~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~-l~-~~-~~~~-----------g~~-~~~~-~a~~~l~ 235 (376)
T PRK06460 173 INQKPL-ELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNV-ID-QM-RRTL-----------GTS-LDPH-AAYLTLR 235 (376)
T ss_pred ccCChh-hcCCCEEEeecceeccCCCCceEEEEecCHHHHHH-HH-HH-HHhc-----------CCC-CCHH-HHHHHHh
Confidence 321111 24689999999998655433 6888887776654 21 11 0001 111 1111 1112222
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCC-----c---------ccccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSP-----P---------EICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
-+. .++..++++.+++.++.+.|++.+.++ +..| + ...++++.|.+.. +..+..++
T Consensus 236 ~~~----~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~-----~~~~~~~~ 306 (376)
T PRK06460 236 GIK----TLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG-----GQESALKV 306 (376)
T ss_pred chh----hHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC-----cHHHHHHH
Confidence 222 245557778899999999999887653 4333 1 1358899998851 12345566
Q ss_pred HHHHhhhcceEeeec-ccC----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIH-YQA----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~-~~~----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|. -+.+.+..+ ..+ +....+.... .+++.+..++.||+|++. ||.+.+++.|++.++
T Consensus 307 ~~~l~-~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 373 (376)
T PRK06460 307 MKSLK-LIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI----EDVNDLIEDLDRALS 373 (376)
T ss_pred HHhCC-cceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 66662 223332221 110 0000000000 011225567899999985 556666666666553
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=196.85 Aligned_cols=269 Identities=16% Similarity=0.176 Sum_probs=185.9
Q ss_pred HHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEe
Q 012991 83 LESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQ 162 (452)
Q Consensus 83 ~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~ 162 (452)
.++++++++++|++++++|++|+|+++++.++.. + +++|+ |++..|.|+.....+ +..|.+++.++
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~--------~~~g~-v~v~~P~y~~y~~~~----~~~g~~~~~v~ 121 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-L--------LPRGR-VGIAPLAYSEYAPAF----ARHGHRVVPLD 121 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-h--------cCCCe-EEEcCCCcHHHHHHH----HHCCCEEEeec
Confidence 7899999999999755899999999999986654 2 36666 888999998865555 44699998884
Q ss_pred CCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHH---HHHcCCCEEEEecccccCCccccc
Q 012991 163 LPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKI---CRDEGVDQVFVDAAHAMGSIKIDV 239 (452)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l---~~~~~~~~~ivD~a~~~g~~~~~~ 239 (452)
. +. ..+ ...++++++++|+||||.+++.+++.++ |++++. ++|+|+++........+
T Consensus 122 ~----~~---------~~~------~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~-~vI~DEay~~~~~~~s~ 181 (339)
T PRK06959 122 E----AA---------DTL------PAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGG-TLIVDEAFADTLPAASL 181 (339)
T ss_pred c----cc---------hhc------cccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEECCCccCCCcccc
Confidence 3 21 112 2345689999999999999998776665 567789 69999998653321111
Q ss_pred c---ccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH
Q 012991 240 K---EIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314 (452)
Q Consensus 240 ~---~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 314 (452)
. ...--+++.|++|. +|.+| +|++++++++++. +. .... ..+.+...+.++.++++..
T Consensus 182 ~~~~~~~~vi~l~SfSK~-~gl~GlRiGy~v~~~~li~~-l~-~~~~-------------~~~vs~~~q~a~~~~L~~~- 244 (339)
T PRK06959 182 AAHTDRPGLVVLRSVGKF-FGLAGVRAGFVLAAPALLAA-LR-DALG-------------AWTVSGPARHAVRAAFADA- 244 (339)
T ss_pred hhccCCCCEEEEecChhh-cCCcchheEEEecCHHHHHH-HH-HhcC-------------CCCCcHHHHHHHHHHhCcH-
Confidence 1 11223778899995 77777 7999998887765 21 1100 0111222333333333321
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 315 RFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
. -.+..++++++.++++.+.|.++ ++.+.. . ++++|+.++ +..++.+.|.++ ||.++..
T Consensus 245 ~---~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~--~--~~f~~~~~~---------~~~~l~~~l~~~-GI~vr~~--- 303 (339)
T PRK06959 245 A---WQAAMRERLAADGARLAALLRAH-GFAVHA--T--PLFSWTDDP---------RAAALHAALARR-GIWTRYF--- 303 (339)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHC-CCCccC--c--ceEEEEeCC---------CHHHHHHHHHhC-CeEEEEC---
Confidence 1 24567788888899999999887 666542 1 567777664 456788998775 9999632
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
...+++||++.. +.+|+++++++|+++++
T Consensus 304 ----------------~~~~~lRisi~~--~~~e~~~l~~al~~~~~ 332 (339)
T PRK06959 304 ----------------APPPSVRFGLPA--DEAEWQRLEDALAECVP 332 (339)
T ss_pred ----------------CCCCeEEEECCC--CHHHHHHHHHHHHHHHH
Confidence 113599999953 78899999999998875
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=210.53 Aligned_cols=320 Identities=18% Similarity=0.202 Sum_probs=218.7
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC-CCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH-RNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~-~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
.+..+.+.++++.+++++|.+ ..-+..++|+.+...++.++ |.|.+..-+ .+++|+++..+|+++... +...
T Consensus 539 QG~lq~i~elq~~l~eLtGmd--~~Sl~p~sGA~gE~A~Lmai-r~yh~~~Ge~~r~~vLIp~saHgtNpas----a~~~ 611 (954)
T PRK12566 539 EGYRAMIDELEAWLCAITGFD--AICMQPNSGAQGEYAGLLAI-RRYHRSRGQSQRDICLIPSSAHGTNPAS----AQMA 611 (954)
T ss_pred cCHHHHHHHHHHHHHHHHCCC--eEeecCCchHHHHHHHHHHH-HHHHHhcCCCCCCEEEecccccccCHHH----HHHC
Confidence 556778899999999999995 22334446777776777765 332211112 246889999999888654 3557
Q ss_pred CcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 155 GGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
|.+++.+ +.++++.+ +++|++.+++. ..++.+|+++++++..+...|+++|.++||++|+ ++++|+++..+
T Consensus 612 GieVv~V----p~D~~G~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Ga-lv~vDgA~~~a 683 (954)
T PRK12566 612 GMRVVIV----ECDPDGNVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGG-QVYMDGANLNA 683 (954)
T ss_pred CCEEEEe----ccCCCCCcCHHHHHHHhhcc---CCCEEEEEEEecCcCceecchHHHHHHHHHHcCC-EEEEEeeChhh
Confidence 9999999 45556666 99999999533 4688999999998876666779999999999999 89999999887
Q ss_pred Ccccc-ccccCccEEEEcCcccCcCCCCcEEEEEec-CccccCCCCCceeccCC----CCcccccccccccCc---cccc
Q 012991 234 SIKID-VKEIGADFYVSNLHKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFG----NGLPIESAWIGTRDY---SAQL 304 (452)
Q Consensus 234 ~~~~~-~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~ 304 (452)
...++ ...+|+|++++++|||+++|.|.|..++.+ ...+. ..+++..+.+ +..+. .++.+. .+..
T Consensus 684 ~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~--L~pfLp~~P~~d~~G~~~r----~ga~S~~~~gsa~ 757 (954)
T PRK12566 684 QVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAH--LAPFVANHPVVPVEGPDPN----NGAVSAAPWGSAS 757 (954)
T ss_pred ccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhh--hhhhccCCCCcCCCCCCCC----CCceeecccchHH
Confidence 77776 578899999999999998888877666555 33332 1112111111 11010 122222 2223
Q ss_pred cHHHHHHHHHHhhcCHHHHHH-H--HHHHHHHHHHHHHHHcCCCcCCCcc-cccceEEEE---cCCccccCChhhHHHHH
Q 012991 305 VIPSAVTFVSRFEGGIDGIMQ-R--NHEQALKMARMLANAWGTSLGSPPE-ICAAMVMVG---LPSRLRVMGEDDALRLR 377 (452)
Q Consensus 305 ~~~~al~~~~~~~~g~~~~~~-~--~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~l~ 377 (452)
.+..++.++..+ |.+ +++ . ...+++|+.+.|.+..++.. .+.. .+..-..+. +++ ..+.+..++.
T Consensus 758 ~l~~A~~Yi~~l--G~e-Lk~aa~~ailnAnYla~rL~~~~~v~~-~~~~~~~~hEfii~~~~l~~----~~g~~~~dva 829 (954)
T PRK12566 758 ILPISWMYIAMM--GPQ-LADASEVAILSANYLANQLGGAFPVLY-RGRNERVAHECILDLRPLKA----QTGISEEDVA 829 (954)
T ss_pred HHHHHHHHHHHH--CHH-HHHHHHHHHHHHHHHHHHhHhhCCCCc-CCCCCCeeeEEEEEcccccc----ccCCCHHHHH
Confidence 356677888876 776 333 2 35789999999987444433 2221 111112222 321 1235667899
Q ss_pred HHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 378 GHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 378 ~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.|. ++||..+..+.+ .++++|+++..+++.+|||+++++|+.+.++
T Consensus 830 kRL~-d~Gihapt~~fP-----------------v~~~LmIepTE~eskeEIDrf~eAL~~I~~e 876 (954)
T PRK12566 830 KRLM-DYGFHAPTMSFP-----------------VPGTLMVEPTESESKAELDRFVEAMLSIRAE 876 (954)
T ss_pred HHHH-HCCcEEeEEeec-----------------cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 9997 579998764332 3579999999999999999999999999876
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=201.98 Aligned_cols=313 Identities=18% Similarity=0.212 Sum_probs=207.5
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++.+|+++|.+ ..++++||++|+.+++.++ +++||+|+++.+.|.+....+...+..
T Consensus 53 y~r~~~p~~~~le~~lA~l~g~~---~av~~~sG~~Ai~~~l~al--------~~~Gd~Vi~~~~~y~~t~~~~~~~~~~ 121 (391)
T TIGR01328 53 YSRLGNPTVSNLEGRIAFLEGTE---AAVATSSGMGAIAATLLTI--------LKAGDHLISDECLYGCTFALLEHALTK 121 (391)
T ss_pred eeCCCCchHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEecCcchHHHHHHHHHHhc
Confidence 44444566889999999999985 4688888899999988876 589999999999998877777766777
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.+++ ++ ++++++++ ++++++|++++++||+|.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 122 ~G~~~~~vd~----~d----~e~l~~~i------~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi-~livD~a~a~~ 186 (391)
T TIGR01328 122 FGIQVDFINM----AI----PEEVKAHI------KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGV-KVIVDNTFATP 186 (391)
T ss_pred CCeEEEEECC----CC----HHHHHHhh------ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCC-EEEEECCCchh
Confidence 8999999943 32 67888888 5789999999999999999999999999999999 79999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
...... ..++|++++|++|+++|+.+ .|+++.+++++.. +. ...... ..|. ....+. ...++.
T Consensus 187 ~~~~~~-~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~-l~-~~~~~~----------~~g~-~l~~~~-a~l~l~ 251 (391)
T TIGR01328 187 MLTNPV-ALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQ-IR-MVGIKD----------MTGS-VISPFD-AWLILR 251 (391)
T ss_pred ccCCch-hcCCCEEEccccccccCCCCceEEEEEcCHHHHHH-HH-HHHHHh----------CCCC-CCCcHH-HHHHHh
Confidence 553332 34799999999998554432 4777777776654 11 100000 0011 011111 122222
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc---c-----------cccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP---E-----------ICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
-++ .+....++..+++.++.+.|.+.++++ +..|. + ..++++.|.++. +.....++
T Consensus 252 ~L~----tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~-----~~~~~~~f 322 (391)
T TIGR01328 252 GLK----TLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG-----GFAGAKKL 322 (391)
T ss_pred CcC----cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC-----CHHHHHHH
Confidence 222 344456677888999999999887764 33331 0 237799998851 12335566
Q ss_pred HHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|. -+.+....+... +....+..... ++..+..++.+|+|++. ||++.+++.|++.++
T Consensus 323 ~~~l~-~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 389 (391)
T TIGR01328 323 LNNLK-LIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL----EDADDLIADLKQALD 389 (391)
T ss_pred HHhCC-cceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 66663 233443332111 00000000000 11224557899999984 567777777776664
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=195.73 Aligned_cols=270 Identities=15% Similarity=0.150 Sum_probs=187.6
Q ss_pred HHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEe
Q 012991 83 LESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQ 162 (452)
Q Consensus 83 ~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~ 162 (452)
.+++++++++++. ++|++|+|+++++.+++. +.+||+|++++|+|+.....+ +..|++++.++
T Consensus 52 ~~Lr~~ia~~~~~---~~I~it~Gs~~al~~~~~----------~~~gd~v~v~~P~y~~~~~~~----~~~g~~~~~v~ 114 (330)
T PRK05664 52 DGLEAAARAYYGA---PQLLPVAGSQAAIQALPR----------LRAPGRVGVLSPCYAEHAHAW----RRAGHQVRELD 114 (330)
T ss_pred HHHHHHHHHHhCC---CCEEECcCHHHHHHHHHH----------ccCCCEEEEcCCChHHHHHHH----HHcCCeEEEec
Confidence 6789999999986 599999999999988753 378999999999999876655 44699999883
Q ss_pred CCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHH---HHHHHHHcCCCEEEEecccccCCccc--
Q 012991 163 LPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRK---LVKICRDEGVDQVFVDAAHAMGSIKI-- 237 (452)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~---i~~l~~~~~~~~~ivD~a~~~g~~~~-- 237 (452)
+ +++++.+ .+++++++++|+||||.+++.++ |+++|+++++ ++|+|+++.......
T Consensus 115 ~-----------~~~~~~~-------~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~-~iI~DE~y~~~~~~~s~ 175 (330)
T PRK05664 115 E-----------AEVEAAL-------DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGG-WLVVDEAFMDNTPQHSL 175 (330)
T ss_pred h-----------hhHhhhh-------cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCC-EEEEECCcccCCCcccc
Confidence 2 3455555 35678999999999999998654 5566788999 799999985332111
Q ss_pred -cccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH
Q 012991 238 -DVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314 (452)
Q Consensus 238 -~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 314 (452)
.+...+-.+++.|+||. +|.+| +|++++++++++. + ..... ..+.+...+.+...+++...
T Consensus 176 ~~~~~~~~vi~~~SfSK~-~gl~GlRiG~~v~~~~l~~~-~-~~~~~-------------~~~~~~~~~~~~~~~L~~~~ 239 (330)
T PRK05664 176 AACAHRPGLIVLRSFGKF-FGLAGARLGFVLAEPALLRA-L-AELLG-------------PWTVSGPTRWLAQAALADTP 239 (330)
T ss_pred cccccCCCEEEEeecccc-ccCCCcceEEEEeCHHHHHH-H-HHhcC-------------CCCCCHHHHHHHHHHHhChH
Confidence 12111223788899996 77666 8999988777765 2 11100 01112222233333443221
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 315 RFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
..+..++.+++.++.+.+.|.+. ++. +......++|+..+ +..++.+.|.+ .||.++..
T Consensus 240 ----~~~~~~~~~~~~r~~l~~~L~~~-~~~---~~~~~~~f~~~~~~---------~~~~~~~~l~~-~gi~v~~f--- 298 (330)
T PRK05664 240 ----WQRRQRERLLAASQRLAALLRRH-GLT---PAGGCALFQWVRTE---------DAAALHEFLAR-RGILTRLF--- 298 (330)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHC-CCc---ccCCcceEEEEecC---------CHHHHHHHHHH-CCeEEEEC---
Confidence 24566777888889999999876 543 22222467777653 45788888866 59999632
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
..++++||+++. +.+++++++++|+++.++.
T Consensus 299 ----------------~~~~~iRis~~~--~~~~~~~l~~al~~~~~~~ 329 (330)
T PRK05664 299 ----------------EQPASLRFGLPA--DEADWARLDQALLAYRKEA 329 (330)
T ss_pred ----------------CCCCeEEEECCC--CHHHHHHHHHHHHHHHhhc
Confidence 123699999985 6888999999999987764
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=200.08 Aligned_cols=351 Identities=13% Similarity=0.125 Sum_probs=227.7
Q ss_pred CCCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.+..++.+..+ ..+..++.+.+++.+.+......+.. ....+...++.+.++++++.+ .+.+++++||++|+
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgsea~ 109 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLG---FFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAV 109 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCc---ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHH
Confidence 45566666543 35567777999998887542111111 123567899999999999964 68999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc---------CcEEEEEeCCCCC--CChHHH-HHHHHH
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA---------GGSVVEVQLPFPL--ASEEEI-INEFKK 179 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~---------g~~v~~~~~~~~~--~~~~~~-~~~l~~ 179 (452)
..++..+. ...++++|++.++.|++.......+.... ..++..++.+.+. ..+... ++.|++
T Consensus 110 ~~al~~~~------~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 183 (413)
T cd00610 110 EAALKLAR------AYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEE 183 (413)
T ss_pred HHHHHHHH------HHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHH
Confidence 99998663 13568999999998888655544321110 1234445321000 012233 788988
Q ss_pred HHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccC-Cc----cccccccCccEEEEc
Q 012991 180 GIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMG-SI----KIDVKEIGADFYVSN 250 (452)
Q Consensus 180 ~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g-~~----~~~~~~~~~d~~~~s 250 (452)
.+++. ..++++|+++..++++|...| +++|.++|++||+ ++|+|++++.. .. ..+.....+|++++
T Consensus 184 ~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~- 258 (413)
T cd00610 184 ALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGI-LLIADEVQTGFGRTGKMFAFEHFGVEPDIVTL- 258 (413)
T ss_pred HHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCcchhhHhhcCCCCCeEEE-
Confidence 88642 247889999998889999887 8999999999999 89999998732 11 12222334677654
Q ss_pred CcccCcCCCCcEEEEEecCccccCC-CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 251 LHKWFFCPPSVAFLYCRKSILSSDM-HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 251 ~~K~l~g~~G~G~l~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
+|++.++..+|+++.++++++. + .... ....+.+.+...+.+..++++.+.+ +.+.+++++
T Consensus 259 -sK~l~~g~~~g~~~~~~~~~~~-~~~~~~-----------~~~~t~~~~~~~~~a~~a~l~~l~~-----~~~~~~~~~ 320 (413)
T cd00610 259 -GKGLGGGLPLGAVLGREEIMDA-FPAGPG-----------LHGGTFGGNPLACAAALAVLEVLEE-----EGLLENAAE 320 (413)
T ss_pred -cccccCccccEEEEEcHHHHHh-hccCCC-----------CCCCCCCcCHHHHHHHHHHHHHHHh-----ccHHHHHHH
Confidence 5998766668999888877764 2 0010 0001122233344455556666653 346778888
Q ss_pred HHHHHHHHHHHHcCC-CcCCCcccccceEEEEcCCcccc--CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGT-SLGSPPEICAAMVMVGLPSRLRV--MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGAR 406 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~ 406 (452)
+.+++.+.|.++... .+.......+.++++.+++.... .+..+...+.+.|.++ ||.+....
T Consensus 321 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~v~~~~-------------- 385 (413)
T cd00610 321 LGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALER-GLLLRPSG-------------- 385 (413)
T ss_pred HHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHC-CeEEeecC--------------
Confidence 999999988876321 22211122367788877521000 0013567788888765 99985321
Q ss_pred CCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 407 DKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 407 ~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
++.+|++++..+|++||++++++|++++
T Consensus 386 ------~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 386 ------GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred ------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 3689999999899999999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=197.98 Aligned_cols=329 Identities=12% Similarity=0.144 Sum_probs=215.6
Q ss_pred CCCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.++.++.+..+ ..++.++.+.+++.+.+.... .....+ ......++.+.++++++.++.+++++++||++|+
T Consensus 41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~-~~~~~~---~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~ 116 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLG-HVSNLF---ATEPQIALAERLVELLGAPEGGRVFFCNSGAEAN 116 (398)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcc-CccCcc---CCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHH
Confidence 34455555432 345656779999988876532 111112 1233468899999998864357999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc------------EEEEEeCCCCCCChHHHHHHHHH
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG------------SVVEVQLPFPLASEEEIINEFKK 179 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~------------~v~~~~~~~~~~~~~~~~~~l~~ 179 (452)
..++..+. ...+++|+..++.|++.......+ .|. ++..+ +..+ ++.+++
T Consensus 117 ~~al~~~~-------~~g~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~ 178 (398)
T PRK03244 117 EAAFKLAR-------LTGRTKIVAAEGGFHGRTMGALAL---TGQPAKRAPFEPLPGGVEHV----PYGD----VDALAA 178 (398)
T ss_pred HHHHHHHH-------HHCCCeEEEECCCcCCccHHHHhc---cCCcccccCCCCCCCCceEe----CCCC----HHHHHH
Confidence 99998653 122357777777887764443321 121 12222 1111 577888
Q ss_pred HHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCc----cccccccCccEEEEc
Q 012991 180 GIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSI----KIDVKEIGADFYVSN 250 (452)
Q Consensus 180 ~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~----~~~~~~~~~d~~~~s 250 (452)
.+ .+++++|+++.++|++|.+.| +++|.++|++||+ ++|+|++++. |.. ........+|++++
T Consensus 179 ~~------~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~- 250 (398)
T PRK03244 179 AV------DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGA-LLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTL- 250 (398)
T ss_pred hh------cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCcccchHHhhhhhCCCCCEEEE-
Confidence 77 468899999999999999987 8899999999999 8999999862 211 11233445787755
Q ss_pred CcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 251 LHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 251 ~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
+|++.++..+|++++++++.+. + .... ....+ ..+...+.+..++++.+. .+.+.++++++
T Consensus 251 -sK~l~~G~~ig~~~~~~~~~~~-~-~~~~---------~~~t~--~~~~~~~aaa~a~l~~~~-----~~~~~~~~~~~ 311 (398)
T PRK03244 251 -AKGLGGGLPIGACLAFGPAADL-L-TPGL---------HGSTF--GGNPVACAAALAVLDTIA-----SEGLLENAERL 311 (398)
T ss_pred -chhhhCCcccEEEEEcHHHHhh-c-cCCC---------CcCCC--CCCHHHHHHHHHHHHHHH-----hccHHHHHHHH
Confidence 5987765558999998887664 2 1110 00011 112222333333344333 23567888889
Q ss_pred HHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
.+++.+.|.++ +..+.......+.++++.++ ...+..+.+.|.++ ||.+...
T Consensus 312 ~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~-------~~~~~~~~~~l~~~-Gv~~~~~------------------- 363 (398)
T PRK03244 312 GEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLT-------APVAKAVEAAAREA-GFLVNAV------------------- 363 (398)
T ss_pred HHHHHHHHHhc-CCCceeeEeeccEEEEEEEe-------ccHHHHHHHHHHHC-CeEEeec-------------------
Confidence 99999999876 33322222234778888775 12456788888775 9998531
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+.||++++..+|++||++++++|++++.+
T Consensus 364 -~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 364 -APDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred -CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 1368999999988999999999999999864
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=186.81 Aligned_cols=298 Identities=12% Similarity=0.071 Sum_probs=187.8
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
.+++.|+.+.....|+.+.+++.+.+..... |+ ....++++++++++. +|++|+|+++++.+++..
T Consensus 8 ~~~i~l~~~~np~~p~~~~~a~~~~~~~~~~-----yp-----~~~~l~~~ia~~~~~----~I~vt~G~~~al~~~~~~ 73 (311)
T PRK08354 8 EGLIDFSASVNPYPPEWLDEMFERAKEISGR-----YT-----YYEWLEEEFSKLFGE----PIVITAGITEALYLIGIL 73 (311)
T ss_pred cceeEecCCCCCCCCHHHHHHHHHHHHHhhc-----CC-----ChHHHHHHHHHHHCC----CEEECCCHHHHHHHHHHh
Confidence 3577887775444467788888876543321 21 135688999999873 799999999999888753
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
+ .+||+|++++|+|+.....+ +..|.++..+ +.+ ++.+++.+ . ++++++++
T Consensus 74 ~---------~~gd~vlv~~P~y~~~~~~~----~~~g~~~~~~----~~d-----~~~l~~~~------~-~~~~vi~~ 124 (311)
T PRK08354 74 A---------LRDRKVIIPRHTYGEYERVA----RFFAARIIKG----PND-----PEKLEELV------E-RNSVVFFC 124 (311)
T ss_pred h---------CCCCeEEEeCCCcHHHHHHH----HHcCCEEeec----CCC-----HHHHHHhh------c-CCCEEEEe
Confidence 3 58999999999999876654 4469888776 322 57777776 2 45789999
Q ss_pred ccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccc
Q 012991 198 HITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILS 272 (452)
Q Consensus 198 ~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~ 272 (452)
+|+||||.+++.+ +|+++|+++|+ ++|+|+++......-......-.+++.|++|. ++.+| +|++++-.+.+.
T Consensus 125 ~P~NPTG~~~~~~~l~~l~~~a~~~~~-~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~-~~l~GlRiG~~v~~~~~l~ 202 (311)
T PRK08354 125 NPNNPDGKFYNFKELKPLLDAVEDRNA-LLILDEAFIDFVKKPESPEGENIIKLRTFTKS-YGLPGIRVGYVKGFEEAFR 202 (311)
T ss_pred cCCCCCCCccCHHHHHHHHHHhhhcCc-EEEEeCcchhccccccccCCCcEEEEeccHhh-cCCccceeeeeeehHHHHH
Confidence 9999999999854 56777889999 79999998543211110112335788899996 77666 788877222111
Q ss_pred cCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc
Q 012991 273 SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI 352 (452)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 352 (452)
. ...+ .+.+. .+.. +...+.+ .+.+.+ ++..+.+.+....+.+... .++.
T Consensus 203 ~-~~~~-----------------~~~~~---~~~~-~~~~~~~--~~~~~~----~~~~~~~~~~~~~l~~~l~-~~~~- 252 (311)
T PRK08354 203 S-VRMP-----------------WSIGS---TGYA-FLEFLIE--DDFEHL----RKTMPLIWREKERFEKALY-VKSD- 252 (311)
T ss_pred H-cCCC-----------------ccCCH---HHHH-HHHHHHH--hHHHHH----HHHHHHHHHHHHHHHHhcC-CCCC-
Confidence 1 0000 01111 1111 2222221 022222 2223333333332212111 2222
Q ss_pred ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHH
Q 012991 353 CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l 432 (452)
++++++.++ +..++.+.|.+ .||.+.++..+ ..++++||+++ +.++.+++
T Consensus 253 -~~~~~~~~~---------~~~~~~~~l~~-~gv~v~~g~~f----------------~~~~~iRi~~~---~~~~~~~l 302 (311)
T PRK08354 253 -ANFFIKDVG---------DAEKFVEFLKR-NGILVRDCTSF----------------GLPGYIRFSVR---DREENEKL 302 (311)
T ss_pred -CcEEEEECC---------CHHHHHHHHHH-CCeEEEecccC----------------CCCCeEEEEeC---CHHHHHHH
Confidence 556665543 45678888866 59999877654 12479999998 67889999
Q ss_pred HHHHHHHH
Q 012991 433 RDAVILLV 440 (452)
Q Consensus 433 ~~~l~~~~ 440 (452)
+++|+++.
T Consensus 303 ~~al~~~~ 310 (311)
T PRK08354 303 IRALREWR 310 (311)
T ss_pred HHHHHHhh
Confidence 99998764
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=200.81 Aligned_cols=309 Identities=16% Similarity=0.204 Sum_probs=201.6
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..+++++.+++++|.+ ++++++||++|+..++.++ +++||+|+++.+.|.+....+..+ ..
T Consensus 47 y~r~~np~~~~lE~~lA~l~g~~---~~l~~~sG~~Ai~~~l~~l--------l~~GD~Vlv~~~~y~~~~~~~~~~-~~ 114 (385)
T PRK08574 47 YSREENPTLRPLEEALAKLEGGV---DALAFNSGMAAISTLFFSL--------LKAGDRVVLPMEAYGTTLRLLKSL-EK 114 (385)
T ss_pred EECCCCccHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH--------hCCCCEEEEcCCCchhHHHHHHHh-hc
Confidence 44555667889999999999984 6677889999999998876 589999999999999987777664 66
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCC-ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccccc
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK-MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAM 232 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~-~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~ 232 (452)
.|++++.+. .+ .+++++.+ .+ ++++|++++++||+|.+.|+++|+++|+++|+ ++++|++++.
T Consensus 115 ~g~~v~~~~----~d-----~~~l~~~i------~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi-~livD~t~a~ 178 (385)
T PRK08574 115 FGVKVVLAY----PS-----TEDIIEAI------KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGA-ILVVDNTFAT 178 (385)
T ss_pred cCcEEEEEC----CC-----HHHHHHhc------CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCC-EEEEECCCCc
Confidence 788888772 22 57788888 44 89999999999999999999999999999999 7999999987
Q ss_pred CCccccccccCccEEEEcCcccCcCCCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
|...... ..++|++++|++|+++|+.. .|.++++ +++.+. + ..+ ...+|. ..+ ++ ....+
T Consensus 179 ~~~~~~l-~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~-~-~~~-~~~~g~----------~~~--p~-~a~l~ 241 (385)
T PRK08574 179 PLLYRPL-RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEE-L-WEW-RRRLGT----------IMQ--PF-EAYLV 241 (385)
T ss_pred cccCChh-hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHH-H-HHH-HHhcCC----------CCC--HH-HHHHH
Confidence 7542222 45789999999999766543 2645554 444332 1 111 000111 111 11 11122
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc----------------ccccceEEEEcCCccccCChhh
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP----------------EICAAMVMVGLPSRLRVMGEDD 372 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 372 (452)
+.-++ -+....++..+++..+.+.|++.+.++ |..|. ...++++.|.++. +...
T Consensus 242 l~~l~----tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~-----~~~~ 312 (385)
T PRK08574 242 LRGLK----TLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKG-----GRDA 312 (385)
T ss_pred HcccC----cHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCC-----CHHH
Confidence 22222 234445666778889999998877663 43331 1247788998851 1234
Q ss_pred HHHHHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 373 ALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 373 ~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
..++.+.|. -+.+.+..+... +....+.... ..++.+..++.+|+|++. ||++.+++.|.+.++
T Consensus 313 ~~~~~~~l~-l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~al~ 383 (385)
T PRK08574 313 VLKFLRSLK-LIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGL----EDVEDLIEDLDQALG 383 (385)
T ss_pred HHHHHHcCC-cceEccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 566777763 234443322111 0000000000 011224557899999984 556667777666653
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=199.55 Aligned_cols=312 Identities=16% Similarity=0.213 Sum_probs=203.1
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH-HH
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY-VT 152 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~-a~ 152 (452)
|++...+..+++++.+++++|.+ .+++++||++|+..++.++ +++||+|+++.+.|.+....+... ++
T Consensus 70 Y~r~~~Pt~~~LE~~lA~l~g~~---~~l~~~sG~~Ai~~al~al--------~~~GD~Vl~~~~~Y~~~~~~~~~~~~~ 138 (418)
T PLN02242 70 YSRHFNPTVLNLGRQMAALEGTE---AAYCTASGMSAISSVLLQL--------CSSGGHVVASNTLYGGTHALLAHFLPR 138 (418)
T ss_pred ccCCCChhHHHHHHHHHHHhCCC---eEEEEccHHHHHHHHHHHH--------hCCCCEEEEcCCcHHHHHHHHHHhhhh
Confidence 55556778999999999999984 6678999999999999887 589999999999998776555322 23
Q ss_pred hcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCC-ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccc
Q 012991 153 RAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK-MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 153 ~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~-~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
..|++++.++. .+ ++++++++ .+ ++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++
T Consensus 139 ~~G~~~~~~d~----~d----~e~l~~~i------~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi-~livDea~~ 203 (418)
T PLN02242 139 KCNITTTFVDI----TD----LEAVKKAV------VPGKTKVLYFESISNPTLTVADIPELARIAHEKGV-TVVVDNTFA 203 (418)
T ss_pred ccCceEEEcCC----CC----HHHHHHhc------CcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCC-EEEEECCCC
Confidence 46888887732 22 68888888 45 59999999999999999999999999999999 799999986
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
... .+...+++|+++.|++|+++|+.. .|+++.+++++.. + ..... + .....|.. ...+.+ +
T Consensus 204 ~~~--~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~-l-~~~~~---~-----~~~~~g~~-~~~~~A---~ 267 (418)
T PLN02242 204 PMV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNS-M-MDLHH---G-----ALMLLGPT-MNPKVA---F 267 (418)
T ss_pred ccC--CCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHH-H-HHHhh---h-----hhhccCCC-CCHHHH---H
Confidence 443 233445789999999998544432 4888877776654 1 11100 0 00011211 111111 1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-----------------ccccceEEEEcCCccccCChhh
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-----------------EICAAMVMVGLPSRLRVMGEDD 372 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 372 (452)
+.. ... ..+...+++..++++++.+.|.+. ++++..|. ...++++.|.+. +...
T Consensus 268 l~~-~~l-~tl~~r~~~~~~~a~~la~~L~~~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~------~~~~ 338 (418)
T PLN02242 268 ELS-ERL-PHLSLRMKEHCRRAMEYAKRMKEL-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMD------TEER 338 (418)
T ss_pred HHH-cCC-CcHHHHHHHHHHHHHHHHHHHHhC-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEEC------CHHH
Confidence 111 111 134555677889999999999987 56665442 134788889884 2334
Q ss_pred HHHHHHHHhhhc----ceEeeecccC-C----CCCCCCCCC--CCCCCCCccceEEecccccCCHH-HHHHHHHHHHHHH
Q 012991 373 ALRLRGHLRVRF----GVEVPIHYQA-P----KDDGQPQAG--ARDKDGIITGYARISHQVYNTLE-DYEKFRDAVILLV 440 (452)
Q Consensus 373 ~~~l~~~L~~~~----gI~v~~~~~~-~----~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~-di~~l~~~l~~~~ 440 (452)
+.++++.|. -. .+.+..+... . ....+.... .....+..++.+|+|++. | |++.+++.|++.+
T Consensus 339 ~~~f~~~l~-~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~~dli~dl~~al 413 (418)
T PLN02242 339 ANRLMRYLQ-NSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGY----TGTLEQRWSQFEKAL 413 (418)
T ss_pred HHHHHHHhh-cccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecC----CCCHHHHHHHHHHHH
Confidence 667777773 12 2333222111 0 000000000 011124567899999985 4 3555666666555
Q ss_pred h
Q 012991 441 E 441 (452)
Q Consensus 441 ~ 441 (452)
+
T Consensus 414 ~ 414 (418)
T PLN02242 414 S 414 (418)
T ss_pred H
Confidence 3
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=197.99 Aligned_cols=313 Identities=15% Similarity=0.202 Sum_probs=207.2
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+...++++++++++|.+ .+++++||++|+..++.++ +++||+|+++.+.|.+....+...+..
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g~~---~~l~~~sG~~Ai~~al~~l--------l~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 126 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEGGE---AAVVAASGMGAISSSLWSA--------LKAGDHVVASDTLYGCTFALLNHGLTR 126 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH--------hCCCCEEEEecCccchHHHHHHHHHhh
Confidence 44445667899999999999974 5788999999999888766 589999999999999877777665677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccc
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHA 231 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~ 231 (452)
.|++++.++. .+ ++++++.+ ++++++|++++|+||+|.+.|+++|.++|+++ |+ ++++|++++
T Consensus 127 ~G~~v~~vd~----~d----~e~l~~~i------~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i-~livDea~~ 191 (400)
T PRK06234 127 YGVEVTFVDT----SN----LEEVRNAL------KANTKVVYLETPANPTLKVTDIKAISNIAHENNKEC-LVFVDNTFC 191 (400)
T ss_pred CCeEEEEECC----CC----HHHHHHHh------ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCC-EEEEECCCC
Confidence 8999999943 32 68888888 57899999999999999999999999999997 89 799999998
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
.+...... ..++|+++.|++|++.|+.. .|++++++++++. +....... ..|. ...+. ....+
T Consensus 192 ~~~~~~~l-~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~-l~~~~~~~-----------~~g~-~l~p~-~a~l~ 256 (400)
T PRK06234 192 TPYIQRPL-QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQ-VKLFGIKD-----------MTGS-VIGPF-EAFLI 256 (400)
T ss_pred chhcCCch-hhCCcEEEeeccccccCCCCceeEEEEecHHHHHH-HHHHHHHH-----------hcCC-CCCHH-HHHHH
Confidence 77543222 34789999999998654331 4888888876554 21000000 0011 00111 11112
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHH
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDAL 374 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
+.-++ .++...++..+++..+.+.|++.+.+. +..|. ...++++.|.++. ......
T Consensus 257 ~~~l~----tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~-----~~~~~~ 327 (400)
T PRK06234 257 IRGMK----TLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKG-----GVEEGK 327 (400)
T ss_pred HhccC----cHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecC-----cHHHHH
Confidence 22222 244556667788899999998876552 33331 1247788998852 123456
Q ss_pred HHHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 375 RLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++.+.|.- +++.+..+... +....++.... ++..+..++.+|+|++. ||.+.+++.|++.++
T Consensus 328 ~f~~~l~~-~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~ 396 (400)
T PRK06234 328 VVMNNVKL-ATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL----EDVDDIIADLKQALD 396 (400)
T ss_pred HHHHhCCc-ceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHH
Confidence 78888843 56665433211 00000111111 11225567899999985 445555555555443
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=197.10 Aligned_cols=298 Identities=18% Similarity=0.182 Sum_probs=192.5
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+...+++++++++. . ++.+++++|++|+..++.++ +++||+|+++++.|.+....+.....+
T Consensus 45 y~ry~~p~~~~Le~~lA~l~-~---~~~v~~~sG~~Ai~~~l~al--------l~~Gd~Vl~~~~~y~~~~~~~~~~l~~ 112 (366)
T PRK07582 45 YGRASNPTWRALEAALGELE-G---AEALVFPSGMAAITAVLRAL--------LRPGDTVVVPADGYYQVRALAREYLAP 112 (366)
T ss_pred eECCCCccHHHHHHHHHHHc-C---CCEEEECCHHHHHHHHHHHh--------cCCCCEEEEeCCCcHhHHHHHHHHHhc
Confidence 33344566899999999998 3 35667777788999998876 589999999999998765555443466
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccc--
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHA-- 231 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~-- 231 (452)
.|++++.++. ++.. + .+ .+++++|++++++||+|.+.|+++|+++|+++|+ ++++|++++
T Consensus 113 ~G~~v~~v~~----~~~~---~----~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~-~lvVD~t~~~~ 174 (366)
T PRK07582 113 LGVTVREAPT----AGMA---E----AA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGA-LLVVDNTTATP 174 (366)
T ss_pred CeEEEEEECC----CChH---H----Hh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCC-EEEEECCCCCc
Confidence 7999999943 3221 1 22 3578999999999999999999999999999999 899999875
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
.+..+++ +++|+++.|++||+.|+.| .|+++.+ +++... + ..... ..| ..++.. ....
T Consensus 175 ~~~~p~~---~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~-l-~~~~~-~~g----------~~~~~~---~a~l 235 (366)
T PRK07582 175 LGQRPLE---LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAA-V-ERWRL-LAG----------AIPGPF---EAWL 235 (366)
T ss_pred cccCchh---cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHH-H-HHHHH-HhC----------CCCCHH---HHHH
Confidence 3444444 4789999999999888877 5887775 444332 1 11100 000 111111 1122
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc---c-----------cccceEEEEcCCccccCChhhH
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP---E-----------ICAAMVMVGLPSRLRVMGEDDA 373 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~ 373 (452)
++.-+. .++...++..+++..+.+.|.+.+.+. |..|. + ..++++.|.++ +.
T Consensus 236 ~~r~l~----tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~---------~~ 302 (366)
T PRK07582 236 AHRSLG----TLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA---------DA 302 (366)
T ss_pred HHhccc----cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC---------CH
Confidence 222222 234445777889999999999988764 33221 1 25889999884 23
Q ss_pred HHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC-C--CCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 374 LRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD-K--DGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 374 ~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~-~--~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
.++.+.+.. .++....... |+........ . ....++.||+|++..+.++.|+.+.++|++
T Consensus 303 ~~~~~~~~~-l~~~~~~~s~----G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 303 AAAERFVAA-SRLVVAATSF----GGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred HHHHHHHHh-CCcceecccC----CCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 344455533 3554321000 0000000000 0 013467999999987766667777777654
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=199.30 Aligned_cols=325 Identities=16% Similarity=0.183 Sum_probs=207.5
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.+++.++++.|.+ ..++++||++|+..++.++ +++||+|+++.+.|++....+...+.+
T Consensus 58 y~r~~~p~~~~Le~~lA~leg~~---~al~~~sG~~Ai~~al~~l--------l~~GD~Vlv~~~~y~~t~~~~~~~~~~ 126 (431)
T PRK08248 58 YTRIMNPTTDVFEKRIAALEGGI---GALAVSSGQAAITYSILNI--------ASAGDEIVSSSSLYGGTYNLFAHTLPK 126 (431)
T ss_pred eECCCCchHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEccCchhhHHHHHHHHHHh
Confidence 44555666888999999999974 7788999999999999876 589999999999998887777776788
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. .+ ++++++++ ++++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.+
T Consensus 127 ~Gv~v~~vd~----~d----~e~l~~ai------~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi-~vIvD~t~a~~ 191 (431)
T PRK08248 127 LGITVKFVDP----SD----PENFEAAI------TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGI-PLIVDNTFASP 191 (431)
T ss_pred CCEEEEEECC----CC----HHHHHHhc------CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCC-EEEEeCCCCcc
Confidence 8999999943 22 68888888 5689999999999999999999999999999999 89999998865
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEe-cCcccc---C---CCCCceec-------cCCCCc----cc--c
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR-KSILSS---D---MHHPVVSH-------EFGNGL----PI--E 291 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~-~~~~~~---~---l~~~~~~~-------~~~~~~----~~--~ 291 (452)
....++ .+++|+++.|++||++| +| +|.+++. .+.... . +..+.-.+ ..+... .. .
T Consensus 192 ~~~~pl-~~gaDivv~S~tK~lgg-~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (431)
T PRK08248 192 YLLRPI-EHGADIVVHSATKFIGG-HGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQL 269 (431)
T ss_pred ccCChh-HcCCCEEEEcCccccCC-CCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHH
Confidence 543333 56899999999998544 44 5665553 322110 0 00000000 000000 00 0
Q ss_pred cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc---------------ccccc
Q 012991 292 SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP---------------EICAA 355 (452)
Q Consensus 292 ~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~ 355 (452)
....| ...+...|.-.++.+ +.+....++..+++..+.+.|++.+.++ +..|. ...++
T Consensus 270 ~~~~G-----~~l~p~~a~l~~rgl-~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg 343 (431)
T PRK08248 270 LRDLG-----AALSPFNSFLLLQGL-ETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGA 343 (431)
T ss_pred HHhcC-----CCCCHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCce
Confidence 00011 111111222222210 1233556777889999999999998764 43331 12377
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~d 428 (452)
++.|.+.. ....+.++.+.|. -+.+.+..+... +....+.... .++..+..++.||+|++. ||
T Consensus 344 ~~sf~l~~-----~~~~~~~f~~~l~-l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed 413 (431)
T PRK08248 344 ILTFGIKG-----GVEAGKKLIDSVK-LFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGT----EA 413 (431)
T ss_pred EEEEEecC-----CHHHHHHHHHhCC-cceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEEecc----CC
Confidence 99998851 1234566777773 234443322110 0000000000 011235568899999984 56
Q ss_pred HHHHHHHHHHHHhc
Q 012991 429 YEKFRDAVILLVEE 442 (452)
Q Consensus 429 i~~l~~~l~~~~~~ 442 (452)
++.+++.|.+.++.
T Consensus 414 ~~dL~~Dl~~Al~~ 427 (431)
T PRK08248 414 IDDILDDLRQAIRQ 427 (431)
T ss_pred HHHHHHHHHHHHHh
Confidence 66677777776654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-22 Score=205.63 Aligned_cols=328 Identities=19% Similarity=0.196 Sum_probs=218.2
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC-CCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF-HRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
.+..+.+.++++++++++|.+ ..-++.++|+.|....+.++ |.|.+..- ..+++|+++...|.++...+ ...
T Consensus 526 qG~lq~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~ai-R~y~~~rge~~R~~vlip~saHgtnPasa----~~~ 598 (939)
T TIGR00461 526 EGYQELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVI-RSYHESRGENHRNICLIPVSAHGTNPASA----AMA 598 (939)
T ss_pred HHHHHHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHH-HHHHHhcCCCCCCEEEEEccccCcCHHHH----HHC
Confidence 446688999999999999996 34456677777766566655 22211101 23468999999998886664 456
Q ss_pred CcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc-HHHHHHHHHHcCCCEEEEeccccc
Q 012991 155 GGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP-VRKLVKICRDEGVDQVFVDAAHAM 232 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~-l~~i~~l~~~~~~~~~ivD~a~~~ 232 (452)
|.+++.+ +.++++.+ +++|++.++++ +.++++|++++++| +|.+.| +++|+++||++|. ++++|+++..
T Consensus 599 G~~Vv~V----~~d~~G~iDle~L~~~i~~~---~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~-~v~VDgAq~~ 669 (939)
T TIGR00461 599 GMQVVPV----NCDQDGNIDLVDLKNKAEQH---GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGG-QVYLDGANMN 669 (939)
T ss_pred CCEEEEe----ccCCCCCcCHHHHHHHHhhc---CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCC-EEEEEecChh
Confidence 9999999 44566777 99999999642 36899999999999 799977 9999999999999 7999999977
Q ss_pred CCccc-cccccCccEEEEcCcccCc-----CCCCcEEEEEecCccccCCCCCceeccC-CCCcc--cc-cccccccCccc
Q 012991 233 GSIKI-DVKEIGADFYVSNLHKWFF-----CPPSVAFLYCRKSILSSDMHHPVVSHEF-GNGLP--IE-SAWIGTRDYSA 302 (452)
Q Consensus 233 g~~~~-~~~~~~~d~~~~s~~K~l~-----g~~G~G~l~~~~~~~~~~l~~~~~~~~~-~~~~~--~~-~~~~~~~~~~~ 302 (452)
+...+ +...+++|++.+|.||+|+ |++|+|++++++.+... +-.+...... +.+.. +. .....+.+...
T Consensus 670 al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~-lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~ 748 (939)
T TIGR00461 670 AQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPF-LPKHDVVSMITGIGGSKSIGSVSAAPYGSASI 748 (939)
T ss_pred hCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhh-cCCCcccccccCCCCccccccccccccCcHHH
Confidence 44433 4567899999999999998 56667999999876654 2111111100 00000 00 00001111111
Q ss_pred cccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHH
Q 012991 303 QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHL 380 (452)
Q Consensus 303 ~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 380 (452)
....+..+..+.. +|+.++.+....+++|+.+.|.+ ++++..+.. .+.+-+++.++.. ....+.+..++.+.|
T Consensus 749 ~l~a~~yi~~lG~--~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~-~~~~g~~~~dIakrL 823 (939)
T TIGR00461 749 LPISWMYIKMMGN--EGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPL-KAKTGIEAIDVAKRL 823 (939)
T ss_pred HHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccch-hhhcCCCHHHHHHHH
Confidence 1223333444443 36777788888999999999987 455544321 1233455555411 111245778999999
Q ss_pred hhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 381 RVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 381 ~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.+ +|+..+..+.+ ..+.+-+.+...++.+|||+++++|.++.++.
T Consensus 824 ~d-~G~hapt~~~p-----------------v~g~lmiepTE~eskeelD~f~~al~~I~~e~ 868 (939)
T TIGR00461 824 QD-YGFHAPTLSFP-----------------VPGTLMVEPTESESLEELDRFCDAMIAIKEEI 868 (939)
T ss_pred Hh-CCeeccccCCc-----------------cCCeEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 76 69998764322 12366666666679999999999998887643
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-22 Score=194.26 Aligned_cols=323 Identities=17% Similarity=0.187 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 80 KGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
....++++.+++++|.+ ..++++|||+|+.+++.++ .+++||+|+++.++|.+...++ ...|++++
T Consensus 29 ~~~~~le~~la~~~g~~---~~v~~~sgt~al~~~l~al-------~~~~Gd~Viv~~~~~~~~~~~~----~~~G~~~~ 94 (380)
T TIGR03588 29 PTVPAFEEALAEYVGAK---YAVAFNSATSALHIACLAL-------GVGPGDRVWTTPITFVATANCA----LYCGAKVD 94 (380)
T ss_pred hhHHHHHHHHHHHHCCC---eEEEEcCHHHHHHHHHHHc-------CCCCCCEEEeCCcchHHHHHHH----HHcCCEEE
Confidence 34688999999999995 4566778999999999976 2589999999999998876554 45699999
Q ss_pred EEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc
Q 012991 160 EVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID 238 (452)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~ 238 (452)
.+++.. +...+ ++++++.+++.+ .+++++|+++| ++|...|+++|.++|+++|+ ++|+|++|+.|.. ++
T Consensus 95 ~~~~~~---~~~~~d~~~l~~~i~~~~--~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~-~lI~D~a~a~g~~-~~ 164 (380)
T TIGR03588 95 FVDIDP---DTGNIDEDALEKKLAAAK--GKLPKAIVPVD---FAGKSVDMQAIAALAKKHGL-KIIEDASHALGAE-YG 164 (380)
T ss_pred EEecCC---CcCCcCHHHHHHHhhccc--CCCceEEEEeC---CCCccCCHHHHHHHHHHcCC-EEEEECCCcccCc-cC
Confidence 996521 12334 899999994210 15788888765 47999999999999999999 7999999999875 44
Q ss_pred ccccCc----cEEEEcCc--ccCcCCCCcEEEEEec-CccccCCCCCceeccCCCCc---------cc--ccccccccCc
Q 012991 239 VKEIGA----DFYVSNLH--KWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGL---------PI--ESAWIGTRDY 300 (452)
Q Consensus 239 ~~~~~~----d~~~~s~~--K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~---------~~--~~~~~~~~~~ 300 (452)
...++. |+.++|+| |++..+.| |+++.++ ++.+. + .....+...... +. .....|...
T Consensus 165 ~~~~g~~~~~d~~~~S~~~~K~~~~~~G-G~v~~~~~~~~~~-~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~- 240 (380)
T TIGR03588 165 GKPVGNCRYADATVFSFHPVKIITTAEG-GAVTTNDEELAER-M-RLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNY- 240 (380)
T ss_pred CEeCCCccccceEEEecCCCCcccccCc-eEEEECCHHHHHH-H-HHHHHCCCCCCcccccccccCcceeeeecccccc-
Confidence 444455 99999987 98766665 6666654 33332 1 111000000000 00 000011111
Q ss_pred cccccHHHHH--HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-c--cccceEEEEcCCccccCChhhHHH
Q 012991 301 SAQLVIPSAV--TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-E--ICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 301 ~~~~~~~~al--~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
.+.-+.+++ ..+. .++.+.++.+++.+++.+.|..++++.+..++ . ....+..+.++.. .+.+.++
T Consensus 241 -~m~~l~aa~g~~qL~----~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~r~~ 311 (380)
T TIGR03588 241 -RMTDIQAALGLSQLK----KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE----FGCTRKE 311 (380)
T ss_pred -CccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc----CCCCHHH
Confidence 111122222 2233 36777888899999999999888766644332 1 1122333333210 1346788
Q ss_pred HHHHHhhhcceEeeecccCCCCCCCCCCCCCC-CC----CCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 376 LRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD-KD----GIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~-~~----~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.+.|.+ .||.++..+.+.+........... .. ......+++.++...|.+||++++++|++++
T Consensus 312 l~~~L~~-~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 312 VFEALRA-AGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHH-CCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 9999976 499987655442210000000000 00 1123679999999999999999999999864
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-24 Score=200.66 Aligned_cols=229 Identities=17% Similarity=0.193 Sum_probs=174.4
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
..+...++++++.+++++|++ ..+++|+|+|+++..++.++ +++||+|++++++|.++..++.. .|
T Consensus 55 ~~~~g~i~~~~~~~A~~~ga~--~~~~~~~Gst~a~~~~l~al--------~~~gd~Vlv~~~~h~s~~~~~~~----~g 120 (294)
T cd00615 55 LDPTGPIKEAQELAARAFGAK--HTFFLVNGTSSSNKAVILAV--------CGPGDKILIDRNCHKSVINGLVL----SG 120 (294)
T ss_pred CCCChHHHHHHHHHHHHhCCC--CEEEEcCcHHHHHHHHHHHc--------CCCCCEEEEeCCchHHHHHHHHH----CC
Confidence 445667899999999999985 55666999999999998876 58999999999999998877654 58
Q ss_pred cEEEEEeCCCCCCCh----HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccc
Q 012991 156 GSVVEVQLPFPLASE----EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAH 230 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~----~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~ 230 (452)
++++++++.. +++ +.+ ++++++++++ .+++++|+++++ |++|.++|+++|+++|+++|+ ++++|++|
T Consensus 121 ~~~~~v~~~~--~~~~~~~~~i~~~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~-~livDeA~ 192 (294)
T cd00615 121 AVPVYLKPER--NPYYGIAGGIPPETFKKALIE----HPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGL-PVLVDEAH 192 (294)
T ss_pred CEEEEecCcc--CcccCcCCCCCHHHHHHHHHh----CCCceEEEEECC-CCCCEecCHHHHHHHHHhcCC-eEEEECcc
Confidence 9999886521 221 234 8999999864 357899999987 689999999999999999999 79999998
Q ss_pred cc-----CCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCcccccc
Q 012991 231 AM-----GSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLV 305 (452)
Q Consensus 231 ~~-----g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (452)
+. +..+.+....++|+++.|+||++.|+++.|+++.+.+.... ..+.. ......+++|++..+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~---~~~~~-------~~~~~~ttsps~~~~as 262 (294)
T cd00615 193 GAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNP---DRVNE-------ALNLHQSTSPSYLILAS 262 (294)
T ss_pred hhhhccCcccCcchhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCH---HHHHH-------HHHHHCCCCcHHHHHHH
Confidence 75 23344444568999999999998787777777776653321 00000 01223357888888899
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 306 IPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 306 ~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
+..+++++... |.+ ..++..++.+++++.|.
T Consensus 263 l~~a~~~~~~~--g~~-~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 263 LDVARAMMALE--GKE-LVEELIELALYARQEIN 293 (294)
T ss_pred HHHHHHHHHHH--hHH-HHHHHHHHHHHHHHHHh
Confidence 99998888653 544 56678888888888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=201.00 Aligned_cols=352 Identities=13% Similarity=0.040 Sum_probs=207.6
Q ss_pred CCeEEeccCCCCCCc---HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CCCCCcEEEecChh
Q 012991 38 HGVARINNGSFGSCP---KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--ADDVGEISLVDNAT 108 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p---~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~i~~t~g~t 108 (452)
++++.|..+.+...| +.+.+++...+... ..+.....|....+..++|++|++++ | ++ +++|++|+|++
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~-~~~I~it~Ga~ 107 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASG-KLTEALGNYDGPQGKDELIEALAALLNERYGWNIS-PQNIALTNGSQ 107 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCc-ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC-hhhEEEccChH
Confidence 567899877765433 33445554443210 00111122444455677888888876 3 54 78999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEE-eCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCC-hHHH-HHHHHHHHhccc
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLM-LHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLAS-EEEI-INEFKKGIEKGK 185 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~-~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~-~~~~-~~~l~~~i~~~~ 185 (452)
+++.+++.++.... ...+||.|++ .+|+|+.+...........+..+..+++ +.+. ...+ ++.|+ +
T Consensus 108 ~al~~~~~~l~~~~---~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~--~---- 176 (416)
T PRK09440 108 SAFFYLFNLFAGRR---ADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELL--PEGQFKYHVDFEHLH--I---- 176 (416)
T ss_pred HHHHHHHHHHhccc---cCCCCCeEEEecCCCchhhHHHhhccCceeecccccccc--cccccccCCCHHHcc--c----
Confidence 99999999873100 0035889999 6999987654322110001122222222 1111 1123 66665 3
Q ss_pred cCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc---cccc--cCccEEEEcCcccCcC
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI---DVKE--IGADFYVSNLHKWFFC 257 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---~~~~--~~~d~~~~s~~K~l~g 257 (452)
..+++++++++|+||||.+++ +++|+++|+++++ ++|+|++++...... +... .+--+++.|++|. +
T Consensus 177 --~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~-~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~--~ 251 (416)
T PRK09440 177 --DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNI-PLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL--G 251 (416)
T ss_pred --CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCC-cEEEeCCccccCCCcchhhcCccccCCeEEEeccccc--C
Confidence 357899999999999999998 4577888999999 799999986422111 1111 1234777899994 5
Q ss_pred CCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCH-----HHHHHHHHHH
Q 012991 258 PPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGI-----DGIMQRNHEQ 330 (452)
Q Consensus 258 ~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~-----~~~~~~~~~~ 330 (452)
.+| +|++++++++++. + .... ..+..+.+...+.+ +..++.. +.+ +.+++.++++
T Consensus 252 ~pGlRiG~~i~~~~l~~~-~-~~~~-----------~~~~~~~s~~~q~~---~~~~l~~--~~~~~~~~~~~~~~~~~r 313 (416)
T PRK09440 252 LPGVRCGIVIADEEIIEA-L-SNMN-----------GIISLAPGRLGPAI---AAEMIES--GDLLRLSETVIRPFYRQK 313 (416)
T ss_pred CCcceEEEEeCCHHHHHH-H-HHHH-----------HHhccCCCcHHHHH---HHHHhcc--chHHHHHHHHHHHHHHHH
Confidence 566 8998888777765 1 1110 00011223333333 3333332 011 1244455666
Q ss_pred HHHHHHHHHHHc-C--CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAW-G--TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 331 ~~~l~~~L~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
++.+.+.|.+.. + +.+..|.+ +.++|+.++.. ..+..++.+.|.+ .||.+.++..+......
T Consensus 314 ~~~~~~~L~~~l~~~~~~~~~p~g--g~fiw~~~~~~-----~~~~~~~~~~l~~-~gV~v~pg~~F~~~~~~------- 378 (416)
T PRK09440 314 VQLAIALLRRYLPDEPCLIHKPEG--AIFLWLWFKDL-----PITTEELYQRLKA-RGVLVVPGHYFFPGLDE------- 378 (416)
T ss_pred HHHHHHHHHHhcccCCeEEecCCC--ceEEEEECCCC-----CCCHHHHHHHHHH-CCEEEechHhhCCCCcc-------
Confidence 677777776642 2 33334443 78899988620 2456788888865 59999876554210000
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
......+++|||++. +.++++.++++|+++++.
T Consensus 379 ~~~~~~~~iRis~~~--~~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 379 DWPHAHQCIRMNYVQ--DDEEIEKGIAILAEEVEK 411 (416)
T ss_pred ccCCcCceEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 000113689999984 789999999999998865
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=202.25 Aligned_cols=323 Identities=15% Similarity=0.121 Sum_probs=205.8
Q ss_pred hhcCCCccccccCCCCCCCCCHHHHHhhhccCCCCeEEeccCCCC--------C-----------------------CcH
Q 012991 5 ARNGELTHHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFG--------S-----------------------CPK 53 (452)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~~~~~~~~l~~~~~~--------~-----------------------~p~ 53 (452)
+.+=+.++++++...++....+....++....+.++++|+.|.+. . +|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~ 84 (407)
T PLN02368 5 ALDYESLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPAD 84 (407)
T ss_pred CCChhhcCHHHHhhhhhcCCHHHHHHHHHHHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHH
Confidence 344445566666666666666766666665567789999988874 1 333
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 54 SVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 54 ~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
.+.+++.. +.. .......|....+..++|+++++++ |.+ ++++|++|+|+++++..++.++. .+
T Consensus 85 ~i~~a~~~-l~~---~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~-------~~ 153 (407)
T PLN02368 85 AIARAKHY-LSL---TSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVI-------RG 153 (407)
T ss_pred HHHHHHHH-Hhc---CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHc-------CC
Confidence 33333322 211 1111223444556677888888877 532 37899999999999999998762 26
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccc
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVI 207 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~ 207 (452)
+||+|++++|.|+.....+ ...|.+++.+++.. ++...+ ++.+++.++.......+++++++++|+||||.++
T Consensus 154 pGd~Vli~~P~Y~~y~~~~----~~~g~~~v~v~~~~--~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~ 227 (407)
T PLN02368 154 EKDGVLVPVPQYPLYSATI----SLLGGTLVPYYLEE--SENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCL 227 (407)
T ss_pred CCCEEEEeCCCCccHHHHH----HHcCCEEEEEeccc--ccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccC
Confidence 8999999999999876555 44689999886531 122334 8999998853211123799999999999999999
Q ss_pred cH---HHHHHHHHHcCCCEEEEecccccCCc----c-cc-------cc----ccCccEEEEcCcccCcCCCC--cEEEEE
Q 012991 208 PV---RKLVKICRDEGVDQVFVDAAHAMGSI----K-ID-------VK----EIGADFYVSNLHKWFFCPPS--VAFLYC 266 (452)
Q Consensus 208 ~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~-~~-------~~----~~~~d~~~~s~~K~l~g~~G--~G~l~~ 266 (452)
+. ++|+++|++|++ ++|+|+++..... + .. +. ..+.-+++.|+||.++|.+| +|++++
T Consensus 228 s~e~l~~l~~~a~~~~~-~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~ 306 (407)
T PLN02368 228 SEANLREILKFCYQERL-VLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEM 306 (407)
T ss_pred CHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEE
Confidence 85 467888999999 7999999764221 1 11 10 01134677899997546777 788874
Q ss_pred ---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH-------HHhhcCHHHHHHHHHHHHHHHHH
Q 012991 267 ---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV-------SRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 267 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-------~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
++++++. +. .... ...+.+...+.++.++++.- ..+.+..+.+++.++++++.+.+
T Consensus 307 ~~~~~~li~~-~~-~~~~------------~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~ 372 (407)
T PLN02368 307 TNIPPKTVEE-IY-KVAS------------IALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTD 372 (407)
T ss_pred eCCCHHHHHH-HH-HHhc------------ccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556554 11 1100 01223444444444444210 00001224567788899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEc
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGL 361 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~ 361 (452)
.|.+++|+.+..|++ ++++|..+
T Consensus 373 ~L~~~~g~~~~~P~G--afy~~~~i 395 (407)
T PLN02368 373 GFNSCKNVVCNFTEG--AMYSFPQI 395 (407)
T ss_pred HHhCCCCeEeCCCCe--eeEeccCC
Confidence 999988887766655 66666544
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=196.88 Aligned_cols=313 Identities=16% Similarity=0.186 Sum_probs=197.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..+++++.+++++|++ ..++++||+.|+.+++.++ +++||+|+++.+.|......+...+..
T Consensus 59 y~r~~~p~~~~le~~lA~l~g~~---~~i~~~sG~~Al~~~l~~l--------l~~Gd~Viv~~~~y~~t~~~~~~~~~~ 127 (403)
T PRK07503 59 YSRISNPTLALLEQRMASLEGGE---AAVALASGMGAITATLWTL--------LRPGDEVIVDQTLYGCTFAFLHHGLGE 127 (403)
T ss_pred eeCCCCchHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH--------cCCCCEEEEccCccchHHHHHHHHHhh
Confidence 44445566899999999999995 3567778889999998865 589999999999997665555544577
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.+++ ++ ++++++++ .+++++|++++++||+|.+.|+++|.++|+++|+ ++|+|++++.+
T Consensus 128 ~G~~v~~vd~----~d----~~~l~~~i------~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi-~lIvD~a~a~~ 192 (403)
T PRK07503 128 FGVTVRHVDL----TD----PAALKAAI------SDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGA-KVVVDNTYCTP 192 (403)
T ss_pred CCEEEEEeCC----CC----HHHHHHhc------CccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999843 32 68888888 5689999999999999999999999999999999 89999999876
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
.....+ ..++|+++.|++|+++|+.+ .|+++.++++.++ +....... ..|... +-.....++.
T Consensus 193 ~~~~~l-~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~-l~~~~~~~-----------~~g~~~--s~~~a~l~l~ 257 (403)
T PRK07503 193 YLQRPL-ELGADLVVHSATKYLGGHGDITAGLVVGGKALADR-IRLEGLKD-----------MTGAVM--SPFDAFLLMR 257 (403)
T ss_pred ccCCch-hhCCCEEEccccccccCCCceeEEEEEcCHHHHHH-HHhhhHHh-----------CcCCCC--CHHHHHHHHc
Confidence 543222 35789999999998665433 5888777766554 11000000 001111 1111122223
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
.++. +....++..+++..+.+.|.+.+.++ +..|. ...++++.|.++. +......+
T Consensus 258 ~L~t----l~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~-----~~~~~~~~ 328 (403)
T PRK07503 258 GLKT----LALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKG-----GIAAGRRF 328 (403)
T ss_pred Ccch----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECC-----CHHHHHHH
Confidence 3332 33344556688888999998877654 32221 0247788888751 11234455
Q ss_pred HHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|. -+......+... +..-.+.... .+++.+..++.||+|++. ||++.+++.|++.++
T Consensus 329 ~~~l~-l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~Al~ 395 (403)
T PRK07503 329 MNALQ-LFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGL----EDVADILADLAQALD 395 (403)
T ss_pred HHhCC-cceeecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEec----CCHHHHHHHHHHHHH
Confidence 55552 222222111100 0000000000 011235567899999985 445555555555544
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=197.02 Aligned_cols=314 Identities=13% Similarity=0.149 Sum_probs=205.9
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++.++++.|.+ ..+++++|+.|+..++.++ +++||+|+++...|.+.+..+..++..
T Consensus 64 Y~r~~~p~~~~le~~lA~l~g~~---~al~~~sG~~Ai~~~l~al--------l~~Gd~Vl~~~~~~~~t~~~~~~~~~~ 132 (403)
T PRK07810 64 YSRYGNPTVSMFEERLRLIEGAE---ACFATASGMSAVFTALGAL--------LGAGDRLVAARSLFGSCFVVCNEILPR 132 (403)
T ss_pred eeCCCCchHHHHHHHHHHHhCCC---cEEEECChHHHHHHHHHHH--------hCCCCEEEEccCCcchHHHHHHHHHHH
Confidence 34344556889999999999984 7788899999999988876 589999999998888777777666778
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++ .++ ++++++++ ++++++|++++++||+|.+.|+++|+++|+++|+ ++++|++++.+
T Consensus 133 ~G~~v~~vd----~~d----~~~l~~ai------~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~-~vivD~a~a~~ 197 (403)
T PRK07810 133 WGVETVFVD----GED----LSQWEEAL------SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGA-KVVLDNVFATP 197 (403)
T ss_pred cCcEEEEEC----CCC----HHHHHHhc------CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCC-EEEEECCCCcc
Confidence 899999994 222 68888888 5789999999999999999999999999999999 89999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
...... ..++|+++.|++|++.| +| .|+++.+++.+...+ ..+.. .. |... +-.....++
T Consensus 198 ~~~~~~-~~gaDivv~S~tK~l~g-~g~~~gG~v~~~~~~~~~~l-~~~~~-~~-----------g~~~--s~~~a~l~l 260 (403)
T PRK07810 198 LLQRGL-PLGADVVVYSGTKHIDG-QGRVLGGAILGDREYIDGPV-QKLMR-HT-----------GPAL--SAFNAWVLL 260 (403)
T ss_pred ccCChh-hcCCcEEEccCCceecC-CcCceeEEEEeChHHHHHHH-HHHHH-Hh-----------CCCC--CHHHHHHHH
Confidence 653222 45799999999998544 44 477877776554201 11100 00 1111 111112233
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCC-----c---------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSP-----P---------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
.-++ .+....++..+++..+.+.|++.+.+. |..| + ...++++.|.++..... +...+.+
T Consensus 261 ~~L~----tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~-~~~~~~~ 335 (403)
T PRK07810 261 KGLE----TLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDA-AKKRAFE 335 (403)
T ss_pred hccC----cHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCc-CHHHHHH
Confidence 3333 345556777888888999999887764 4433 1 12477888988510000 0123456
Q ss_pred HHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 376 LRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+++.|. -+.+.+..+... +..-.+.... .+.+.+..++.+|+|++. |+++.+++.|.+.+
T Consensus 336 f~~~l~-l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGl----E~~~dli~dl~~Al 402 (403)
T PRK07810 336 VLDKLR-VIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGL----EDTDDLIADLDRAL 402 (403)
T ss_pred HHHhCC-ceEEeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 666663 234333322110 0000000000 011225567899999984 56777777776654
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=195.20 Aligned_cols=309 Identities=15% Similarity=0.166 Sum_probs=199.6
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+....++++++++.|.+ ..+++++|+.|+.+++. + +++||+|+++++.|++....+..++.+
T Consensus 44 y~r~~~p~~~~Le~~la~l~g~~---~al~~~SG~~Al~~~l~-~--------l~pGd~Vi~~~~~y~~t~~~~~~~~~~ 111 (380)
T PRK06176 44 YSRSGNPTRFALEELIADLEGGV---KGFAFASGLAGIHAVFS-L--------FQSGDHVLLGDDVYGGTFRLFDKVLVK 111 (380)
T ss_pred ccCCCChhHHHHHHHHHHHhCCC---CEEEECCHHHHHHHHHH-H--------cCCCCEEEEcCCChhHHHHHHHHHHHh
Confidence 44444566889999999999985 34666777889887664 3 489999999999999888888776788
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. .+ ++++++++ .+++++|++++|+||+|.+.|+++|.++|+++|+ ++|+|++++.+
T Consensus 112 ~gi~v~~vd~----~d----~e~l~~ai------~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi-~vivD~t~a~~ 176 (380)
T PRK06176 112 NGLSCTIIDT----SD----LSQIKKAI------KPNTKALYLETPSNPLLKITDLAQCASVAKDHGL-LTIVDNTFATP 176 (380)
T ss_pred cCeEEEEcCC----CC----HHHHHHhc------CcCceEEEEECCCCCCceecCHHHHHHHHHHcCC-EEEEECCcccc
Confidence 8999998843 22 68888888 5789999999999999999999999999999999 89999999876
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCcc-ccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSIL-SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
...... .+++|++++|++|++.|+.. .|+++.+++.+ .+ + ... ... .|.. .+...+.
T Consensus 177 ~~~~p~-~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~-~-~~~-~~~-----------~G~~-----~~~~~~~ 236 (380)
T PRK06176 177 YYQNPL-LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQE-I-AFF-QNA-----------IGGV-----LGPQDSW 236 (380)
T ss_pred ccCCcc-ccCCCEEEecCceeccCCccceeeEEEecHHHHHHH-H-HHH-HHH-----------hcCC-----CCHHHHH
Confidence 543332 46899999999999777643 46677654333 32 1 110 000 0100 0001111
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
.....+ ..+....++..+++..+.+.|++.+.+. ++.|. ...++++.|.+. +.....+
T Consensus 237 l~~~gl-~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~------~~~~~~~ 309 (380)
T PRK06176 237 LLQRGI-KTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLK------NDSEAVA 309 (380)
T ss_pred HHHhcc-CcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC------CHHHHHH
Confidence 111100 1234445566777888888898876653 33221 124788999885 2334556
Q ss_pred HHHHHhhhcceEeeecccC-----CCCCCCCCCC-C-CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 376 LRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG-A-RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~-~-~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+++.|. -+.+.+..+... +....+.... . ++..+..++.||+|++. ||++.+++.|++.++
T Consensus 310 f~~~l~-~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~Al~ 377 (380)
T PRK06176 310 FVESLK-LFILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGI----EHEQDLLEDLEQAFA 377 (380)
T ss_pred HHHcCC-cceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 777763 344444332111 0000000000 0 11225567899999984 566667776666654
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=194.77 Aligned_cols=324 Identities=17% Similarity=0.175 Sum_probs=207.0
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+....+++.++++.|.+ ..+++++|++|+.+++.++ +++||+|+++.+.|.+....+...+..
T Consensus 57 y~r~~~p~~~~le~~lA~l~g~~---~al~~~SG~~Ai~~al~al--------l~pGd~VIv~~~~y~~t~~~~~~~~~~ 125 (427)
T PRK05994 57 YTRITNPTNAVLEERVAALEGGT---AALAVASGHAAQFLVFHTL--------LQPGDEFIAARKLYGGSINQFGHAFKS 125 (427)
T ss_pred eECCCCccHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH--------hCCCCEEEEecCcchhHHHHHHHHHHh
Confidence 44444556788999999999985 4788899999999999876 589999999999999887777666677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++ .++ ++++++++ ++++++|++++++||+|.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 126 ~G~~v~~vd----~~d----~~~l~~ai------~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi-~livD~a~a~~ 190 (427)
T PRK05994 126 FGWQVRWAD----ADD----PASFERAI------TPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGL-PLIVDNTLASP 190 (427)
T ss_pred cCcEEEEEC----CCC----HHHHHHhc------CcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCC-EEEEECCcccc
Confidence 899999984 332 57888888 5789999999999999999999999999999999 79999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC-cEEEEEecCcccc--CCCCCceec---cCCCCccc-c---------------
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS-VAFLYCRKSILSS--DMHHPVVSH---EFGNGLPI-E--------------- 291 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G-~G~l~~~~~~~~~--~l~~~~~~~---~~~~~~~~-~--------------- 291 (452)
.... ...+++|+++.|++|+++|+.+ +|.+++....... .-..+.+.. ..+ +... +
T Consensus 191 ~~~~-pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (427)
T PRK05994 191 YLIR-PIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYH-GLVLHETFGNFAFAIAARVLG 268 (427)
T ss_pred ccCC-ccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhh-hhhHHHHhhhhhhHHHHHHHH
Confidence 6432 2346899999999998665544 5555553221110 000000000 000 0000 0
Q ss_pred cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc---------------ccccc
Q 012991 292 SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP---------------EICAA 355 (452)
Q Consensus 292 ~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~ 355 (452)
....|.. .+-...+..++-++ .++...++..+++..+.+.|++.|.++ +..|. ...++
T Consensus 269 ~~~~G~~--~~~~~A~l~~~~l~----tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~ 342 (427)
T PRK05994 269 LRDLGPA--ISPFNAFLILTGIE----TLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGA 342 (427)
T ss_pred HHhcCCC--CCHHHHHHHHcCcc----cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceE
Confidence 0001111 00011111222222 356667777889999999999988764 43331 12477
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~d 428 (452)
++.|.+.. +.....++.+.|. -+.+.+..+... +....+..... ++..+..++.||+|++. ||
T Consensus 343 ~~sf~l~~-----~~~~~~~~~~~l~-l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----E~ 412 (427)
T PRK05994 343 VFTFGLKG-----GYEAGVKLVSSLK-LFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGI----ED 412 (427)
T ss_pred EEEEEecC-----CHHHHHHHHHhCC-cceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEEecc----CC
Confidence 88998851 1234556777763 345444332111 00000101000 11124557899999984 56
Q ss_pred HHHHHHHHHHHHh
Q 012991 429 YEKFRDAVILLVE 441 (452)
Q Consensus 429 i~~l~~~l~~~~~ 441 (452)
.+.+++.|++.++
T Consensus 413 ~~dli~dl~~Al~ 425 (427)
T PRK05994 413 VDDIIADLEQALA 425 (427)
T ss_pred HHHHHHHHHHHHh
Confidence 6667777776664
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=190.85 Aligned_cols=321 Identities=16% Similarity=0.130 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 80 KGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
+...++++.+++++|++ .+++++|||+|+.+++.++ .+++||+|++++++|.+...++ ...|++++
T Consensus 33 ~~~~~le~~la~~~g~~---~~v~~~sgt~al~lal~al-------~~~~Gd~Viv~~~~~~~~~~~~----~~~G~~~v 98 (379)
T PRK11658 33 PKNQALEQAFCQLTGNQ---HAIAVSSATAGMHITLMAL-------GIGPGDEVITPSLTWVSTLNMI----VLLGATPV 98 (379)
T ss_pred HhHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHc-------CCCCCCEEEECCCcHHHHHHHH----HHcCCEEE
Confidence 45799999999999995 5788999999999999876 2589999999999999886655 44699999
Q ss_pred EEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc-
Q 012991 160 EVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI- 237 (452)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~- 237 (452)
.++++. +...+ ++++++++ ++++++|+.+| ++|...|+++|.++|+++|+ ++|+|++|+.|....
T Consensus 99 ~vd~~~---~~~~~d~~~l~~~i------~~~tkav~~~~---~~G~~~d~~~i~~~a~~~gi-~vi~D~a~a~g~~~~~ 165 (379)
T PRK11658 99 MVDVDR---DTLMVTPEAIEAAI------TPRTKAIIPVH---YAGAPADLDAIRAIGERYGI-PVIEDAAHAVGTYYKG 165 (379)
T ss_pred EEecCC---CcCCcCHHHHHHhc------ccCCeEEEEeC---CCCCcCCHHHHHHHHHHcCC-eEEEECCCccCCeECC
Confidence 996531 11224 88999988 57899988554 58999999999999999999 799999999887643
Q ss_pred -cccccCccEEEEcCcccCcCCCCcEEEEEe-cCccccCCCCCceeccCCCCc-----------c-cccccccccCcccc
Q 012991 238 -DVKEIGADFYVSNLHKWFFCPPSVAFLYCR-KSILSSDMHHPVVSHEFGNGL-----------P-IESAWIGTRDYSAQ 303 (452)
Q Consensus 238 -~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~ 303 (452)
.....+.++++++.+|.+.++.| |+++.+ +++.++ + ..... .|... + ......|... .+
T Consensus 166 ~~~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~-~-~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~G~n~--~~ 238 (379)
T PRK11658 166 RHIGARGTAIFSFHAIKNITCAEG-GLVVTDDDELADR-L-RSLKF--HGLGVDAFDRQTQGRAPQAEVLTPGYKY--NL 238 (379)
T ss_pred eecCCCCCEEEeCCCCCcCcccCc-eEEEECCHHHHHH-H-HHHHH--cCCCcchhhhhcccCCCcceeecccccc--Cc
Confidence 24445667888888898877665 766665 444443 1 11110 11100 0 0001112211 23
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc--c-ccceEEEEcCCccccCChhhHHHHHHHH
Q 012991 304 LVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE--I-CAAMVMVGLPSRLRVMGEDDALRLRGHL 380 (452)
Q Consensus 304 ~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L 380 (452)
..+.+|+...... +++.+.++.+++++++.+.|..++...+..+.. . ....+.+.++.. ..+.+.+++.+.|
T Consensus 239 ~~l~AAl~~~ql~--~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~L 313 (379)
T PRK11658 239 ADINAAIALVQLA--KLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEE---RCGISRDALMEAL 313 (379)
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCc---cccCCHHHHHHHH
Confidence 3456666655543 788888999999999999998775333333221 1 123444554310 0134678899999
Q ss_pred hhhcceEeeecccCCCCCCCCCC-CCCCCC----CCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 381 RVRFGVEVPIHYQAPKDDGQPQA-GARDKD----GIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 381 ~~~~gI~v~~~~~~~~~~~~~~~-~~~~~~----~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
.+ .||.++..+.+.+.-..-.. .-...+ ......+.+.++...|++|++++++.|++++
T Consensus 314 ~~-~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 314 KE-RGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred HH-CCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 76 49987655433221000000 000000 1123467777777789999999999999875
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=194.77 Aligned_cols=307 Identities=15% Similarity=0.146 Sum_probs=197.2
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..+++++.++++.|++ ..++++||++|+.+++. + +++||+|+++++.|++....+......
T Consensus 46 y~r~~~pt~~~le~~la~l~g~~---~~~~~~sG~~ai~~~~~-l--------l~~Gd~Vl~~~~~y~~t~~~~~~~~~~ 113 (366)
T PRK08247 46 YSRTGNPTRGVLEQAIADLEGGD---QGFACSSGMAAIQLVMS-L--------FRSGDELIVSSDLYGGTYRLFEEHWKK 113 (366)
T ss_pred ccCCCCchHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHH-H--------hCCCCEEEEecCCcCcHHHHHHHHhhc
Confidence 45555667899999999999995 34778888999987764 3 478999999999999877777665677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. .+ ++.+++++ .+++++|++++|+||+|...++++|+++|+++|+ ++++|++++.+
T Consensus 114 ~G~~v~~vd~----~d----~~~l~~~i------~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~-~lIvD~t~~~~ 178 (366)
T PRK08247 114 WNVRFVYVNT----AS----LKAIEQAI------TPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGL-LLIVDNTFYTP 178 (366)
T ss_pred cCceEEEECC----CC----HHHHHHhc------ccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999843 22 67888888 5689999999999999999999999999999999 79999998665
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
...... ..++|+++.|++|++.|+.+ .|+++.+ +++... + .... ...+ ...+... ...++
T Consensus 179 ~~~~p~-~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~-~-~~~~-~~~g----------~~~s~~~---a~l~~ 241 (366)
T PRK08247 179 VLQRPL-EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCER-L-AYYQ-NAAG----------AVLSPFD---SWLLI 241 (366)
T ss_pred cccCch-hcCCcEEEeecceeccCCCceeeeEEecChHHHHHH-H-HHHH-HhcC----------CCCChHH---HHHHH
Confidence 432222 34789999999999776543 4676665 344332 1 1110 0000 1111111 11122
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEee
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVP 389 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~ 389 (452)
.-++ .+....++.+++++.+.+.|++.+++. +..|+. ++++.|.+. ......++.+.|. -+.+...
T Consensus 242 ~~l~----tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~--gg~~sf~~~------~~~~~~~~~~~l~-~~~~~~s 308 (366)
T PRK08247 242 RGMK----TLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGR--GGMLSFRLQ------DEEWVNPFLKSLK-LITFAES 308 (366)
T ss_pred hccC----cHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCc--CcEEEEEEC------CHHHHHHHHHcCC-cceEccC
Confidence 2222 233445567889999999999988875 444433 678888774 1222334555442 1222221
Q ss_pred eccc-----CCCCCCC--CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 390 IHYQ-----APKDDGQ--PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 390 ~~~~-----~~~~~~~--~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.. .+....+ .....+...+..++.+|+|++. |+++.+++.|++.++
T Consensus 309 lg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl----E~~~dl~~dl~~al~ 363 (366)
T PRK08247 309 LGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI----ENVEDLIADLKQAFK 363 (366)
T ss_pred CCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 1100 0000000 0000011124557799999984 566667777766664
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=197.90 Aligned_cols=273 Identities=17% Similarity=0.154 Sum_probs=185.4
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCC------CCcEEEecChhHHHHHHHHHhhccccc----CCCC--CCCEEEEeCCcchh
Q 012991 75 FNSLRKGILESRAAVKDLINADD------VGEISLVDNATTAAAIVLQQIGRGFTE----GRFH--RNDTVLMLHCAFQA 142 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~------~~~i~~t~g~t~a~~~~~~~l~~~~~~----~~~~--~g~~Vl~~~~~~~s 142 (452)
.....++..++.+++++++|.++ ...-++|+|||+++..++.+....+.. .... +.-.|++++..|.|
T Consensus 74 ~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S 153 (373)
T PF00282_consen 74 SPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYS 153 (373)
T ss_dssp SHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-TH
T ss_pred ccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccH
Confidence 35667888999999999999972 135789999999999988766443311 0011 12267778889999
Q ss_pred HHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCC
Q 012991 143 VKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGV 221 (452)
Q Consensus 143 ~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~ 221 (452)
+.++... .|+.++.+ +.++++.+ +++|+++|++....+..|.+|+.+.+++.+|.+.|+++|+++|+++++
T Consensus 154 ~~Kaa~~----lGlg~~~I----~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~ 225 (373)
T PF00282_consen 154 IEKAARI----LGLGVRKI----PTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNI 225 (373)
T ss_dssp HHHHHHH----TTSEEEEE-----BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-
T ss_pred HHHhcce----eeeEEEEe----cCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccce
Confidence 8877655 59999999 45555665 888888887654444567789999999999999999999999999999
Q ss_pred CEEEEecccccCCc------cccccccCccEEEEcCcccCcCCCCcEEEEEecCccc-cCC--CCCceeccC-CCCcc--
Q 012991 222 DQVFVDAAHAMGSI------KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILS-SDM--HHPVVSHEF-GNGLP-- 289 (452)
Q Consensus 222 ~~~ivD~a~~~g~~------~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~-~~l--~~~~~~~~~-~~~~~-- 289 (452)
++|||+|++.... +....-..+|.++.++|||++.|.++|++++|+.... ..+ ...|+.... ..+..
T Consensus 226 -wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~ 304 (373)
T PF00282_consen 226 -WLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYD 304 (373)
T ss_dssp -EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGC
T ss_pred -eeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccc
Confidence 5999999876332 1122223689999999999999999999999875432 100 112211000 00000
Q ss_pred -cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEc
Q 012991 290 -IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL 361 (452)
Q Consensus 290 -~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 361 (452)
......++. -...+.++..++.+..- |+.+..++..++++++.+.|.+.+++++..++. .++++|++
T Consensus 305 ~~~~tl~~SR-~~~alk~w~~l~~~G~~--G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~--~~~vcFr~ 372 (373)
T PF00282_consen 305 YGDYTLQGSR-RFRALKLWATLKSLGRE--GYRERIRRCIELARYLADRLRKDPRFELVNEPD--LNIVCFRY 372 (373)
T ss_dssp EEEGSSSSSG-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTS--SSEEEEEE
T ss_pred cccccccccc-cchHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC--ceEEEEEe
Confidence 111111222 22334455556655543 888889999999999999999998899888665 77888876
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=194.17 Aligned_cols=308 Identities=15% Similarity=0.181 Sum_probs=199.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+...++++.++++.|.+ . .+++++|+.++..++. + +++||+|+++++.|++.+..+..++.+
T Consensus 44 y~r~~~p~~~~Le~~lA~l~g~~--~-~~~~~sG~aai~~~~~-~--------l~~Gd~Viv~~~~y~~~~~~~~~~~~~ 111 (377)
T PRK07671 44 YSRTGNPTRAALEELIAVLEGGH--A-GFAFGSGMAAITAVMM-L--------FSSGDHVILTDDVYGGTYRVMTKVLNR 111 (377)
T ss_pred cCCCCChHHHHHHHHHHHHhCCC--c-eEEeCCHHHHHHHHHH-H--------hCCCCEEEECCCccchHHHHHHHHHhc
Confidence 44445667899999999999985 3 4556777778776654 3 489999999999999877777665677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++ ..+ ++++++++ .+++++|++++|+||+|.+.|+++|.++|+++|+ ++++|++++.+
T Consensus 112 ~G~~v~~v~----~~d----~~~l~~ai------~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~-~lvvD~a~~~~ 176 (377)
T PRK07671 112 FGIEHTFVD----TSN----LEEVEEAI------RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGL-LTIVDNTFMTP 176 (377)
T ss_pred CCeEEEEEC----CCC----HHHHHHhc------CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCC-EEEEECCCCcc
Confidence 899999984 222 68888888 5789999999999999999999999999999999 79999998765
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
..... ..+++|++++|++|+++|+.+ .|++++++ ++.+. + ... ....| +..+. .....++
T Consensus 177 ~~~~p-~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~-~-~~~-~~~~g----------~~~~~---~~a~l~~ 239 (377)
T PRK07671 177 YWQSP-ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAED-L-HFV-QNSTG----------GILGP---QDSWLLL 239 (377)
T ss_pred ccCCh-hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHH-H-HHH-HHhhc----------CCCCH---HHHHHHH
Confidence 43222 245789999999999777653 46666654 34333 1 110 00000 11111 1111122
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
+-++ .+....++..+++..+.++|++.+++ .++.|. ...++++.|.+. +......
T Consensus 240 ~~l~----tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~------~~~~~~~ 309 (377)
T PRK07671 240 RGLK----TLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG------SEETANK 309 (377)
T ss_pred cCcC----hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC------CHHHHHH
Confidence 2222 23445666778889999999987765 343331 124778888873 2334566
Q ss_pred HHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 376 LRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.+.|. -+.+.+..+... +....+.... .++..+..++.||+|++. ||.+.+++.|+..+
T Consensus 310 f~~~l~-l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al 376 (377)
T PRK07671 310 VLERLQ-YFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGI----EDGEDLIEDLAQAL 376 (377)
T ss_pred HHHhCC-cceEccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHh
Confidence 767663 234444332210 0000000000 011225567899999984 56677777776654
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=193.27 Aligned_cols=331 Identities=13% Similarity=0.138 Sum_probs=206.8
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.+++.++++.|.+ ..+++++|++|+..++.++ +++||+|+++...|.+....+...+.+
T Consensus 63 Ysr~~~p~~~~Le~~lA~l~g~~---~av~~sSG~aAi~~al~al--------l~~Gd~Vv~~~~~y~~t~~~~~~~l~~ 131 (436)
T PRK07812 63 YTRIMNPTQDVVEQRIAALEGGV---AALLLASGQAAETFAILNL--------AGAGDHIVSSPRLYGGTYNLFHYTLPK 131 (436)
T ss_pred ccCCCCchHHHHHHHHHHHhCCC---eEEEEccHHHHHHHHHHHH--------hCCCCEEEEeCCcchHHHHHHHHHhhc
Confidence 44444566789999999999985 5688889999999999876 589999999999998887766655567
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++- + + .++.+++++ ++++++|++++++||+|.+.|+++|+++||++|+ +++||++++.+
T Consensus 132 ~Gi~v~~vdd--~-~----d~e~l~~ai------~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi-~liVD~t~a~~ 197 (436)
T PRK07812 132 LGIEVSFVED--P-D----DLDAWRAAV------RPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGV-PLIVDNTIATP 197 (436)
T ss_pred CeEEEEEECC--C-C----CHHHHHHhC------CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 7888888831 1 1 167888888 5789999999999999999999999999999999 89999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCcccc-CCCCCce---eccCCC----C--cc--c-cccccccc
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSS-DMHHPVV---SHEFGN----G--LP--I-ESAWIGTR 298 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~-~l~~~~~---~~~~~~----~--~~--~-~~~~~~~~ 298 (452)
...... .+++|+++.|+||+++ +.| +|.+++....... ......+ +..+.. . .. . +.......
T Consensus 198 ~~~~pl-~~GaDivv~S~tK~lg-g~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (436)
T PRK07812 198 YLIRPL-EHGADIVVHSATKYLG-GHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLR 275 (436)
T ss_pred ccCCch-hcCCCEEEEecccccC-CCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHH
Confidence 654333 4689999999999864 444 5555554332211 0000000 000000 0 00 0 00000000
Q ss_pred CccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc---------------ccccceEEEEcC
Q 012991 299 DYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP---------------EICAAMVMVGLP 362 (452)
Q Consensus 299 ~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~~~~~~~~ 362 (452)
......+-..+.-.+..+ +.+....++..+++..+.+.|++.|.++ |..|. ...++++.|.+.
T Consensus 276 ~~G~~l~p~~a~l~~rgl-~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~ 354 (436)
T PRK07812 276 DLGSAISPFNAFLIAQGL-ETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELA 354 (436)
T ss_pred hcCCCCCHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEec
Confidence 000111112222222211 2456667777899999999999988763 44431 134789999885
Q ss_pred CccccCChhhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHH
Q 012991 363 SRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDA 435 (452)
Q Consensus 363 ~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~ 435 (452)
. +...+.++.+.|. -..+.+..+... +....+.... .++..+..++.||+|++. ||++.+++.
T Consensus 355 ~-----~~~~~~~f~~~l~-l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGl----Ed~~dli~d 424 (436)
T PRK07812 355 G-----GVEAGKAFVNALT-LHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGI----EGIDDILAD 424 (436)
T ss_pred C-----CHHHHHHHHHhCC-cceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHH
Confidence 1 1234567777773 334443221110 0000010100 011225567899999984 566677777
Q ss_pred HHHHHhc
Q 012991 436 VILLVEE 442 (452)
Q Consensus 436 l~~~~~~ 442 (452)
|++.++.
T Consensus 425 l~~Al~~ 431 (436)
T PRK07812 425 LEAGFAA 431 (436)
T ss_pred HHHHHHh
Confidence 7776654
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-22 Score=195.89 Aligned_cols=318 Identities=15% Similarity=0.141 Sum_probs=202.1
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+........+++.++++.+.+ ++++++||++|+..++.++ +++||+|+++.+.|......+...+..
T Consensus 77 y~R~~~Pt~~~Le~~lA~leg~~---~~iv~~sG~~Ai~~~l~al--------~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~ 145 (427)
T PRK07049 77 YSRFNHPNSEIVEDRLAVYEGAE---SAALFSSGMSAIATTLLAF--------VRPGDVILHSQPLYGGTETLLAKTFRN 145 (427)
T ss_pred ccCCCCcCHHHHHHHHHHHhCCC---cEEEEccHHHHHHHHHHHH--------hCCCCEEEEcCCCcccHHHHHHHHHHh
Confidence 34444566789999999999874 6888899999999999876 589999999999999887666554567
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH------cCCCEEEEe
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD------EGVDQVFVD 227 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~------~~~~~~ivD 227 (452)
.|++++.++. . .+ .+++++.+++.. ..+++++|++++|+||||.++|+++|.+++++ +++ ++++|
T Consensus 146 ~Gi~~v~~~~--~-~d----~~~l~~~l~~~~-~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~-~vvvD 216 (427)
T PRK07049 146 FGVGAVGFAD--G-LS----EAAIGAAAEAAA-AKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRP-IIACD 216 (427)
T ss_pred cCcEEEEEeC--C-CC----HHHHHHHHHhhc-cCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCC-EEEEE
Confidence 7988776641 1 12 344555443210 02579999999999999999999999999987 789 79999
Q ss_pred cccccCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCcccccc
Q 012991 228 AAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLV 305 (452)
Q Consensus 228 ~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (452)
+++..+.....+ ..++|+++.|++|+++|..| +|+++.++++.+. +. .. ...+| +..+. ..
T Consensus 217 ety~~~~~~~pl-~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~-l~-~~-~~~~g----------~~ls~---~~ 279 (427)
T PRK07049 217 NTLLGPVFQKPL-EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQ-VR-AL-RSAIG----------TQLDP---HS 279 (427)
T ss_pred CCccccccCCcc-ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHH-HH-HH-HHhcC----------CCCCH---HH
Confidence 986543321112 34689999999998765555 6888877766554 11 11 00001 11111 11
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc----------------ccccceEEEEcCCccccC
Q 012991 306 IPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP----------------EICAAMVMVGLPSRLRVM 368 (452)
Q Consensus 306 ~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~ 368 (452)
...+++.++ .+....++..+++..+.+.|++.++++ |..|. ...++++.|.+..
T Consensus 280 a~l~~r~L~----tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~----- 350 (427)
T PRK07049 280 CWMLGRSLE----TLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG----- 350 (427)
T ss_pred HHHHHcCCC----hHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC-----
Confidence 222333333 234445666888999999999987763 43331 0247789998851
Q ss_pred ChhhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 369 GEDDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 369 ~~~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+...+.++.+.|. -+++.+..+... +....+..... ++..+..++.||+|++ .||++.+++.|++.++
T Consensus 351 ~~~~~~~f~~~l~-l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svG----lE~~~dl~~dl~~al~ 425 (427)
T PRK07049 351 GQAAAFRFLNALQ-IFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIG----IEHPDDLIADLAQALD 425 (427)
T ss_pred CHHHHHHHHHcCc-ccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeC----cCCHHHHHHHHHHHHh
Confidence 1233556777763 244444332111 00000000000 1122456789999998 4667777887777765
Q ss_pred c
Q 012991 442 E 442 (452)
Q Consensus 442 ~ 442 (452)
.
T Consensus 426 ~ 426 (427)
T PRK07049 426 A 426 (427)
T ss_pred c
Confidence 3
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=196.81 Aligned_cols=340 Identities=11% Similarity=0.009 Sum_probs=212.9
Q ss_pred CCeEEeccCCC--CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC-CC----CCCcEE--EecChh
Q 012991 38 HGVARINNGSF--GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN-AD----DVGEIS--LVDNAT 108 (452)
Q Consensus 38 ~~~~~l~~~~~--~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~----~~~~i~--~t~g~t 108 (452)
++++.|+.|.+ ...|..+.+.+.+.+..... +.....|....+..++|+++++++. .. ++++|+ .|.|++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~ 107 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAE-KNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGT 107 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhcc-ccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcc
Confidence 57889998864 23343456666666543321 2222346667788899999999763 11 356888 488999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
.|+.+++.++. ..+++||+|++++|.|+.....+ +..|++++.+++.. +++..+ ++.+++.+++.
T Consensus 108 ~al~~~~~~l~-----~~~~~Gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~l~~--~~~~~~d~~~l~~~~~~~--- 173 (404)
T PTZ00376 108 GALRLGFEFLK-----RFLPAGTTVYVSNPTWPNHVNIF----KSAGLNVKEYRYYD--PKTKGLDFDGMLEDLRTA--- 173 (404)
T ss_pred hHHHHHHHHHH-----HhcCCCCEEEEcCCCchhHHHHH----HHcCCceeeccccC--cccCCcCHHHHHHHHHhC---
Confidence 99988876431 13589999999999999876554 55699999996521 122334 78888888642
Q ss_pred CCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCcc---------cccccc-CccEEEEcCccc
Q 012991 188 GKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSIK---------IDVKEI-GADFYVSNLHKW 254 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~~---------~~~~~~-~~d~~~~s~~K~ 254 (452)
.++++++++++++||||.+++. ++|+++|++|++ ++|+|+++..-... ..+... .--+++.|+||.
T Consensus 174 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~-~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~ 252 (404)
T PTZ00376 174 PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNL-IPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKN 252 (404)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc-EEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCc
Confidence 2456788899999999999985 467888999999 79999997532211 011111 124778899996
Q ss_pred CcCCCC--cEEEE---EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH---HHhhcCHHHHHHH
Q 012991 255 FFCPPS--VAFLY---CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV---SRFEGGIDGIMQR 326 (452)
Q Consensus 255 l~g~~G--~G~l~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~g~~~~~~~ 326 (452)
++++| +|+++ .+++++.. +....... ....+ +..+...+.++..+++.- ..+..-.+.++++
T Consensus 253 -~~~~GlRvG~~~~~~~~~~~~~~-l~~~~~~~-------~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 322 (404)
T PTZ00376 253 -MGLYGERIGALHIVCANKEEAAN-VLSQLKLI-------IRPMY-SSPPIHGARIADRILSDPELRAEWLSELKEMSGR 322 (404)
T ss_pred -ccccccccceEEEEeCCHHHHHH-HHHHHHHH-------Hhhhc-CCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 77666 78873 34443322 10000000 00001 122222333333333211 1100014455667
Q ss_pred HHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 327 NHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
++++++.+.+.|.+.. ++....+++ +.++|+.++ .++++.|.+++||.+.+
T Consensus 323 ~~~~r~~l~~~L~~~~~~~~~~~~~p~g--g~f~~~~~~-----------~~~~~~L~~~~~v~v~p------------- 376 (404)
T PTZ00376 323 IQNMRQLLYDELKALGSPGDWEHIINQI--GMFSFTGLT-----------KEQVERLIEKYHIYLLD------------- 376 (404)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccCc--eEEEecCCC-----------HHHHHHHHHhCCEeecC-------------
Confidence 8888999999998862 123333433 666776542 36778887777998731
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+. |++++. .+.++++.++++|++++.
T Consensus 377 ----------~~-Ris~~~-~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 377 ----------NG-RISVAG-LTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred ----------CC-eEEEec-cCHHhHHHHHHHHHHHHh
Confidence 12 999964 489999999999999875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=194.15 Aligned_cols=333 Identities=13% Similarity=0.105 Sum_probs=207.7
Q ss_pred CCeEEeccCCC---C-CCc--HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCCcE--EEe
Q 012991 38 HGVARINNGSF---G-SCP--KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVGEI--SLV 104 (452)
Q Consensus 38 ~~~~~l~~~~~---~-~~p--~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~i--~~t 104 (452)
++++.|+.|.+ . ..| +.+.+++.+.... + ....|....+..++|+++++++... ++++| ++|
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~----~-~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT 100 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLET----E-TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQT 100 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhccc----c-cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEec
Confidence 57889988842 1 233 4566666554321 1 1223555677888899999886311 35666 999
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
+|+++|+.+++.++. .+++||+|++++|.|+.....+. ..|++++.+++.. .+++.+ ++.+++.+++
T Consensus 101 ~Ga~~al~~~~~~l~------~~~pGd~Vlv~~P~y~~~~~~~~----~~g~~~v~v~~~~--~~~~~~d~~~l~~~~~~ 168 (396)
T PRK09257 101 PGGTGALRVGADFLK------RAFPDAKVWVSDPTWPNHRAIFE----AAGLEVKTYPYYD--AATKGLDFDAMLADLSQ 168 (396)
T ss_pred CCccHHHHHHHHHHH------HhCCCCeEEECCCCcccHHHHHH----HcCCcEEEEeccc--cccCccCHHHHHHHHHh
Confidence 999999999987652 24799999999999998766654 4699999996421 122344 8899988864
Q ss_pred cccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCcc-----cc---cccc-CccEEEEcC
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSIK-----ID---VKEI-GADFYVSNL 251 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~~---~~~~-~~d~~~~s~ 251 (452)
. ..++.++++++++||||.+++. ++|+++|++|++ ++|+|+++..-... .. +... ...+++.|+
T Consensus 169 ~---~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~-~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~Sf 244 (396)
T PRK09257 169 A---PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGL-IPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSF 244 (396)
T ss_pred C---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc-EEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEc
Confidence 2 2446778889999999999984 567889999999 79999997642211 00 1111 224778899
Q ss_pred cccCcCCCC--cEEEEE--e-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH---HHhhcCHHHH
Q 012991 252 HKWFFCPPS--VAFLYC--R-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV---SRFEGGIDGI 323 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~g~~~~ 323 (452)
+|. ++++| +|++++ . ++.+.. +....... .... ..+++...+.++..+++.- ..+..-++.+
T Consensus 245 SK~-~~~~GlRiG~~~~~~~~~~~~~~-~~~~~~~~-------~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 314 (396)
T PRK09257 245 SKN-FGLYGERVGALSVVAEDAEEADR-VLSQLKAT-------IRTN-YSNPPAHGAAIVATILNDPELRAEWEAELEEM 314 (396)
T ss_pred CCc-CccccccceeEEEEeCCHHHHHH-HHHHHHHH-------hhhh-cCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 996 77766 788774 2 232221 00000000 0000 0122222222222232210 0001135567
Q ss_pred HHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQ 400 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~ 400 (452)
+++++++++.+.+.|.+.. ++.+..|++ +.++|+.++ .. ++..|.++.||.+.+
T Consensus 315 r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~g--g~~~w~~l~----------~~-~~~~l~~~~~V~~~p---------- 371 (396)
T PRK09257 315 RERIKAMRQLLVEALKAKGPSRDFDFIARQR--GMFSYSGLT----------PE-QVDRLREEFGVYAVG---------- 371 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccccc--eEEEecCCC----------HH-HHHHHHHcCCEEEcC----------
Confidence 8888889999999998763 244444444 677777653 23 344454557998741
Q ss_pred CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 401 PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 401 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.+ |++++. .+.++|+.+++.|+++
T Consensus 372 ------------~~--ri~~~~-~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 372 ------------SG--RINVAG-LNESNIDYVAEAIAAV 395 (396)
T ss_pred ------------CC--eEEEee-CCHHHHHHHHHHHHhh
Confidence 12 999964 4788999999999875
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-21 Score=189.55 Aligned_cols=324 Identities=15% Similarity=0.187 Sum_probs=211.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccccc--C
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTE--G 125 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~--~ 125 (452)
.|...+.+.+++.+.+.... ..+.. ...+...++.+.++++++. +.+++++|||+|+..++..+. .+.+ .
T Consensus 55 ~Gh~~~~i~~a~~~~~~~~~-~~~~~---~~~~~~~~l~~~l~~~~~~---~~~~~~~SGs~A~e~al~~a~-~~~~~~~ 126 (401)
T PRK00854 55 QGHCHPKILAAMVEQAGRLT-LTSRA---FRNDQLAPLYEELAALTGS---HKVLPMNSGAEAVETAIKAVR-KWGYEVK 126 (401)
T ss_pred CCCCCHHHHHHHHHHHhhcc-ccccc---cCCHHHHHHHHHHHhhCCC---CEEEEeCCcHHHHHHHHHHHH-HHHHhcc
Confidence 34557779999998887642 11111 1245678899999999876 489999999999999998763 2210 0
Q ss_pred CCCCC-CEEEEeCCcchhHHHHHHHHHH---------hcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 126 RFHRN-DTVLMLHCAFQAVKKSIQAYVT---------RAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 126 ~~~~g-~~Vl~~~~~~~s~~~~~~~~a~---------~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
...++ ++|++....|++....+..+.. .....+..+ +..+ ++++++.+ ++++++|+
T Consensus 127 g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~le~~i------~~~~~aii 192 (401)
T PRK00854 127 GVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVV----PFGD----AEALEAAI------TPNTVAFL 192 (401)
T ss_pred CCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEe----CCCC----HHHHHHHh------CCCeEEEE
Confidence 11233 6888888777765433322100 001123333 2222 68888888 57899999
Q ss_pred EeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCccc----cccccCccEEEEcCcccCcCCC-CcEEEE
Q 012991 196 IDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIKI----DVKEIGADFYVSNLHKWFFCPP-SVAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~~----~~~~~~~d~~~~s~~K~l~g~~-G~G~l~ 265 (452)
+++++|++|.+.| +++|.++|++||+ ++|+|++++ +|..+. +.....+|+++++ |++.+.. .+|+++
T Consensus 193 ~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi-~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~ 269 (401)
T PRK00854 193 VEPIQGEAGVIIPPAGYFTRVRELCTANNV-TLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVL 269 (401)
T ss_pred EccccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEE
Confidence 9999999999997 9999999999999 899999997 544331 1223357888875 9886643 368888
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
.++++++. + .... .+ ..+ + .+.....+..++++.+.+ +.+.++.+++.+++.+.|.++ +..
T Consensus 270 ~~~~~~~~-l-~~~~---~~------~t~-~-~~~~~~aa~~a~L~~l~~-----~~~~~~~~~~~~~l~~~L~~~-~~~ 330 (401)
T PRK00854 270 SNSEVLGV-L-KPGQ---HG------STF-G-GNPLACAVARAALKVLTE-----EGMIENAAEMGAYFLEGLRSI-RSN 330 (401)
T ss_pred EcHHHHhc-c-cCCC---CC------CCC-C-cCHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHhh-ccC
Confidence 88887765 2 1110 00 001 1 122334444455655543 225677888899999999876 332
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
........+.++.+.+.. +..+..++.+.|.++ ||.+.. ...+++|++++..++
T Consensus 331 ~~~~~~g~g~~~~i~~~~-----~~~~~~~~~~~L~~~-GV~v~~--------------------~~~~~lR~~p~~~~t 384 (401)
T PRK00854 331 IVREVRGRGLMLAVELEP-----EAGGARQYCEALKER-GLLAKD--------------------THDHTIRLAPPLVIT 384 (401)
T ss_pred ceEEEeccceEEEEEEec-----CchhHHHHHHHHHHC-CeEEec--------------------CCCCEEEEeCCcccC
Confidence 221112235555554421 123567899999775 999842 123699999998899
Q ss_pred HHHHHHHHHHHHHHHh
Q 012991 426 LEDYEKFRDAVILLVE 441 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~ 441 (452)
++||++++++|++++.
T Consensus 385 ~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 385 REQVDWALEQIAKVLA 400 (401)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998864
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=196.71 Aligned_cols=360 Identities=13% Similarity=0.118 Sum_probs=210.9
Q ss_pred CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-----CC--CC--CCcEEEecChh
Q 012991 39 GVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-----NA--DD--VGEISLVDNAT 108 (452)
Q Consensus 39 ~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~--~~--~~~i~~t~g~t 108 (452)
+++.|..+.++ ..|+.+.+..... .. .. |....+..++++++++.+ +. +. .++|++|+|++
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~~~~-~~-----~~---Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~ 171 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELVDGI-IG-----DN---YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGT 171 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHH-hc-----CC---CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHH
Confidence 47888888887 4456566644433 21 11 223344555666666522 11 11 24899999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+|+..++.++... ..+++||+|++++|.|+........ ...+.+++.++. ..++...+ .+++++++
T Consensus 172 ~al~~~~~aL~~~---~ll~pGD~Vlv~~P~y~~Y~~~~~l--~g~~~~~v~v~~--~~~~~f~~d~~~l~~~~------ 238 (527)
T PRK09275 172 AAMCYIFDSLKEN---GLLKAGDKIALMTPIFTPYLEIPEL--PRYDLEVVHINA--DEENEWQYPDSELEKLR------ 238 (527)
T ss_pred HHHHHHHHHHhhh---hcCCCCCEEEEeCCChHHHHHHHHH--cCCCeEEEEeec--CcccCCCCCHHHHHhhc------
Confidence 9999998864211 0268999999999999886554432 122444454532 11222334 78888877
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHH--cCCCEEEEecccccCCcc-ccccc-c-CccEEEEcCcccCcCCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRD--EGVDQVFVDAAHAMGSIK-IDVKE-I-GADFYVSNLHKWFFCPP 259 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~--~~~~~~ivD~a~~~g~~~-~~~~~-~-~~d~~~~s~~K~l~g~~ 259 (452)
++++++|++++|+||||.+++ +++|+++|++ +++ ++|+|++++.-... ..+.. . .-.+++.|+||. +|++
T Consensus 239 ~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l-~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~-f~mt 316 (527)
T PRK09275 239 DPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDL-MIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKY-FGAT 316 (527)
T ss_pred CCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCc-EEEECCCChhhcccccCHHHhCCCCEEEEeehhhh-ccCc
Confidence 689999999999999999998 5677888865 489 79999998642211 11111 1 235788899996 8888
Q ss_pred C--cEEEEEecC-----ccccCC--------CCCceec--c-----CCCCcc-----cccccccccCccccccHH--HHH
Q 012991 260 S--VAFLYCRKS-----ILSSDM--------HHPVVSH--E-----FGNGLP-----IESAWIGTRDYSAQLVIP--SAV 310 (452)
Q Consensus 260 G--~G~l~~~~~-----~~~~~l--------~~~~~~~--~-----~~~~~~-----~~~~~~~~~~~~~~~~~~--~al 310 (452)
| +|+++++++ ++.. + ...+.+. + +..... .........+...+.++. ...
T Consensus 317 G~RlG~i~~~~~~v~~~~i~~-l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~ 395 (527)
T PRK09275 317 GWRLGVIALHEDNVFDKLIAK-LPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLF 395 (527)
T ss_pred HhHHhhhhcCchhHHHHHHHh-ccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence 8 799888775 3221 1 0000000 0 000000 011112223333333211 111
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc--cC--------ChhhHHHHHHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR--VM--------GEDDALRLRGHL 380 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~l~~~L 380 (452)
..+...+...+.+++.++++++.+.+.| ++.+...+...+.++++.++.... .+ ...+..+++..|
T Consensus 396 all~~~~~~~~~~~~~~~~Rr~~l~~~L----g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~L 471 (527)
T PRK09275 396 ALLDEEDAYKKAMKDIIRRRYKALYEGL----GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRL 471 (527)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHc----CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHH
Confidence 2222101124566667777777776666 444322111226777777753210 00 112567888888
Q ss_pred hhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 381 RVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 381 ~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.++.||.+.++..+. ...+++|+|+.. .+++++....++|++++++.
T Consensus 472 l~e~gV~v~PG~~Fg---------------~~~~~vRis~a~-~~~~~~~~~~~rl~~~l~~y 518 (527)
T PRK09275 472 AEETGVVLLPGGGFG---------------GPEWSVRVSLAN-LNEEDYAKIGKAIRKLLDEY 518 (527)
T ss_pred HhcCCEEEeCchhhC---------------CCCCeEEEEEec-CCHHHHHHHHHHHHHHHHHH
Confidence 888899987776652 235689999974 26788888888888887643
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=191.51 Aligned_cols=313 Identities=14% Similarity=0.061 Sum_probs=203.4
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++.+++++|. +++++++||++|+.+++.++ +++||+|+++++.|.+....+...+..
T Consensus 59 Y~r~~~pt~~~Le~~lA~l~g~---~~~l~~~sgt~Ai~~~l~al--------~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 127 (394)
T PRK07050 59 YGLHATPTSLALAQRLAEIEGG---RHALLQPSGLAAISLVYFGL--------VKAGDDVLIPDNAYGPNRDHGEWLARD 127 (394)
T ss_pred cCCCCCHHHHHHHHHHHHHhCC---CeEEEeccHHHHHHHHHHHH--------hCCCCEEEEecCCcccHHHHHHHHHHh
Confidence 5555666789999999999997 48999999999999999987 589999999999999887766666778
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. .+ .+++++.+ .+++++|++++|+||+|...++++|+++|+++|+ ++++|++++.|
T Consensus 128 ~Gi~v~~vd~----~~----~~~l~~~i------~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi-~livD~a~a~~ 192 (394)
T PRK07050 128 FGITVRFYDP----LI----GAGIADLI------QPNTRLIWLEAPGSVTMEVPDVPAITAAARARGV-VTAIDNTYSAG 192 (394)
T ss_pred cCeEEEEECC----CC----HHHHHHhc------CCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCC-EEEEECCcccc
Confidence 8999998842 22 36678877 5789999999999999999999999999999999 79999999887
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
.. ......++|+++.|++|++.|..+ .|.++.++ ++.++ + ... ....|. +.+ + .....++
T Consensus 193 ~~-~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~-~-~~~-~~~~G~----------~~~--~-~~a~l~l 255 (394)
T PRK07050 193 LA-FKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAK-L-KLA-RMRLGI----------GVS--A-DDCSLVL 255 (394)
T ss_pred cc-cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHH-H-HHH-HHhcCC----------CCC--H-HHHHHHH
Confidence 64 222334789999999999766554 46666644 44333 1 111 000111 111 1 1111222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
+-+. .+..-.++..+++..+.+.|++.+.+. ++.|. ...++++.|.+... ....+..+
T Consensus 256 r~l~----tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~---~~~~~~~~ 328 (394)
T PRK07050 256 RGLP----SLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDER---YSPAQVDA 328 (394)
T ss_pred cCCC----cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCC---CCHHHHHH
Confidence 2222 233334556677778889998887653 33221 12367778877510 01245677
Q ss_pred HHHHHhhhcceEeeecccCCCCCCCCCC-CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 376 LRGHLRVRFGVEVPIHYQAPKDDGQPQA-GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+.+.|.. .++.+..+....---..... .........++.||+|++. ||++.+++.|.+.++
T Consensus 329 ~~~~l~~-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl----E~~~dl~~dl~~al~ 390 (394)
T PRK07050 329 FVEALEL-FAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL----EDEADLIADLEQALE 390 (394)
T ss_pred HHHcCCC-CeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc----CCHHHHHHHHHHHHH
Confidence 8888854 57666443221000000000 0000111345899999985 445555555555543
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=184.21 Aligned_cols=330 Identities=16% Similarity=0.159 Sum_probs=212.9
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 121 (452)
+|-+.+.....++++++|...-. ...-.|+.++...++++.++++++. +.++|+++||+|+.+++.+.
T Consensus 3 ~f~SDn~~g~~~~m~eam~~a~~------~~~~~YG~D~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~~--- 70 (342)
T COG2008 3 DFRSDNVAGPTPEMREALAAANA------VGDDVYGEDPTTNALEQRIAELFGK---EAALFVPSGTQANQLALAAH--- 70 (342)
T ss_pred ccccCccCCCCHHHHHHHHhccc------cCCCCCCCCHHHHHHHHHHHHHhCC---ceEEEecCccHHHHHHHHHh---
Confidence 44444444344448888876421 1223467788899999999999998 69999999999999999987
Q ss_pred cccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 122 ~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
++|+..|++...+|.....+-.. +--.++....+ ....++.+ +++++..++..-.+...+.+++..+..
T Consensus 71 -----~~~~~~vi~~~~aHi~~~E~Ga~-~~~~~~~~~~~----~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~ 140 (342)
T COG2008 71 -----CQPGESVICHETAHIYTDECGAP-EFFGGGQKLPI----VPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTA 140 (342)
T ss_pred -----cCCCCeEEEeccccceecccCcH-HHHcCCceecc----CCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeecc
Confidence 58999999998888765433221 11122222222 23456777 999999887521122334455554455
Q ss_pred CCCcccccHH---HHHHHHHHcCCCEEEEeccc---ccCCcccccc--ccCccEEEEcCcccCcCCCCcEEEEEecCccc
Q 012991 201 SMPCVVIPVR---KLVKICRDEGVDQVFVDAAH---AMGSIKIDVK--EIGADFYVSNLHKWFFCPPSVAFLYCRKSILS 272 (452)
Q Consensus 201 n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~---~~g~~~~~~~--~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~ 272 (452)
|..|+++|++ +|.++||++|+ ++|+|||- +.-....+.. ..++|+++++++|.++.|.| ++++.+.+++.
T Consensus 141 te~GtVy~l~el~~i~~~~k~~~l-~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~g-Aiv~gn~~~~~ 218 (342)
T COG2008 141 TEGGTVYPLDELEAISAVCKEHGL-PLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVG-AIVFGNRDFAK 218 (342)
T ss_pred CCCceecCHHHHHHHHHHHHHhCC-ceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceee-eEEEcCHHHHH
Confidence 5779999965 56788999999 79999973 2211222222 23699999999998555654 78888888887
Q ss_pred cCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc
Q 012991 273 SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI 352 (452)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 352 (452)
+ ..+.....|+.+. -..++++. ++-.+.. .-......+..+++++|.+.+...+|+++..|+.
T Consensus 219 ~---a~~~rK~~Ggl~~----------k~r~laA~-~~~~l~~--~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~- 281 (342)
T COG2008 219 R---ARRWRKRAGGLMR----------KARFLAAQ-GLYALED--DVWRLAADHANAMAARLAEGLEAKPGVKLAFPVE- 281 (342)
T ss_pred H---HHHHHHHhcccHh----------hhhHHHHH-HHHHHhc--cHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCc-
Confidence 6 2333333444331 11222222 2333332 1244445556667999999999888999888754
Q ss_pred ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHH
Q 012991 353 CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l 432 (452)
.+++.+.+++ ...+.-....++.. .|+++. .....+|+.++.-++++||+++
T Consensus 282 -tN~vf~~l~~-----~~i~~l~~~~~~~~-~~~~~~---------------------~~~~~vRfvts~a~~~edv~~~ 333 (342)
T COG2008 282 -TNMVFVRLPE-----SAIEALRLAGALFY-RGVLIG---------------------AHGEIVRFVTSWATSEEDVDEL 333 (342)
T ss_pred -ccEEEEECCh-----HHHHHHHhhchhhe-eeeecc---------------------CCCceEEEEeeccCCHHHHHHH
Confidence 7899888862 11222222222222 133331 0013799999999999999999
Q ss_pred HHHHHHHH
Q 012991 433 RDAVILLV 440 (452)
Q Consensus 433 ~~~l~~~~ 440 (452)
+..++++.
T Consensus 334 ~~~~~~~~ 341 (342)
T COG2008 334 VAAIKALL 341 (342)
T ss_pred HHHHHHhh
Confidence 99998864
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=191.87 Aligned_cols=330 Identities=15% Similarity=0.158 Sum_probs=202.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.+++.+++++|++ ..+++++|++|+.+++.++ +++||+|+++..+|.++...+.....+
T Consensus 63 Y~r~~~pt~~~le~~la~l~g~~---~~v~fsSG~~Ai~~al~~l--------l~~Gd~VI~~~~~y~~t~~~~~~~l~~ 131 (437)
T PRK05613 63 YSRLTNPTVEALENRIASLEGGV---HAVAFASGQAAETAAILNL--------AGAGDHIVTSPRLYGGTETLFLVTLNR 131 (437)
T ss_pred eeCccChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHh--------cCCCCEEEECCCccHHHHHHHHHHHHh
Confidence 44555677899999999999984 4455566668888888765 589999999999999987666555677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++++++. + .+ ++++++++ +++|++|+++++.|++|.+.|+++|+++|+++|+ ++|+|++++.|
T Consensus 132 ~Gi~v~~vd~--~-~d----~e~l~~~l------~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi-~livD~t~a~g 197 (437)
T PRK05613 132 LGIEVTFVEN--P-DD----PESWQAAV------QPNTKAFFGETFANPQADVLDIPAVAEVAHRNQV-PLIVDNTIATA 197 (437)
T ss_pred cCeEEEEECC--C-CC----HHHHHHhC------CccCeEEEEECCCCCCCcccCHHHHHHHHHHcCC-eEEEECCCccc
Confidence 8999999941 1 11 68888888 6789999999999999999999999999999999 89999999887
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEE-ecCcccc------CCCCCceeccC----------CCCc-ccccc
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYC-RKSILSS------DMHHPVVSHEF----------GNGL-PIESA 293 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~-~~~~~~~------~l~~~~~~~~~----------~~~~-~~~~~ 293 (452)
.. .+...+++|++++|+||++ ++.| +|.+++ +++.... .+.+.....+. +... ..+..
T Consensus 198 ~~-~~p~~~GaDivv~S~~K~l-~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (437)
T PRK05613 198 AL-VRPLELGADVVVASLTKFY-TGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKAR 275 (437)
T ss_pred cc-cChHHhCCCEEEeecccee-cCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHH
Confidence 65 3444568999999999975 5443 354444 4332100 00000000000 0000 00000
Q ss_pred cccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc---------------ccccceE
Q 012991 294 WIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP---------------EICAAMV 357 (452)
Q Consensus 294 ~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~~~ 357 (452)
...........+-..+.-.++.+ +.+....++..+++..+.+.|++.|.+. |..|. ...++++
T Consensus 276 ~~~~~~~G~~~~p~~a~l~~rgl-~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~ 354 (437)
T PRK05613 276 AGLLRDTGATLSPFNAWVTAQGL-DTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVL 354 (437)
T ss_pred HHHHHhcCCCCCHHHHHHHHccc-CcHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEE
Confidence 00000001111112222122211 1345556677889999999999988763 43331 1136789
Q ss_pred EEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHH
Q 012991 358 MVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~ 430 (452)
.|.+.. +...+..+.+.|. -+.+.+..+... +....+..... +++.+..++.||+|++. ||++
T Consensus 355 sf~l~~-----~~~~~~~f~~~l~-l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl----E~~~ 424 (437)
T PRK05613 355 SFDIKG-----GKDEAWAFIDALK-LHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVGI----EDID 424 (437)
T ss_pred EEEecC-----CHHHHHHHHHhCC-cceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEEecc----CCHH
Confidence 998851 1234566777763 234433222110 00000000000 11235567899999984 5666
Q ss_pred HHHHHHHHHHh
Q 012991 431 KFRDAVILLVE 441 (452)
Q Consensus 431 ~l~~~l~~~~~ 441 (452)
.+++.|.+.++
T Consensus 425 dLi~Dl~~Al~ 435 (437)
T PRK05613 425 DIIADLEGGFA 435 (437)
T ss_pred HHHHHHHHHHh
Confidence 67777766664
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-21 Score=187.59 Aligned_cols=325 Identities=15% Similarity=0.152 Sum_probs=200.5
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.+++.++++.|.. . .+.+++|++|+..++.++ +++||+|+++++.|+++...+.. ..+
T Consensus 41 Y~r~g~p~~~~lE~~la~leg~~--~-~v~~ssG~~Ai~~~l~al--------l~~Gd~Vv~~~~~y~~t~~~~~~-l~~ 108 (397)
T PRK05939 41 YARQGTPTTAALEAKITKMEGGV--G-TVCFATGMAAIAAVFLTL--------LRAGDHLVSSQFLFGNTNSLFGT-LRG 108 (397)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCC--e-EEEeCCHHHHHHHHHHHH--------cCCCCEEEECCCccccHHHHHHH-HHh
Confidence 44444567889999999999985 3 456666789999998876 58999999999999887666655 467
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. .+ .+++++++ .++|++|++++++||+|.+.|+++|+++|+++|+ ++++|++++.+
T Consensus 109 ~G~~v~~v~~----~d----~e~l~~~l------~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi-~livD~t~a~~ 173 (397)
T PRK05939 109 LGVEVTMVDA----TD----VQNVAAAI------RPNTRMVFVETIANPGTQVADLAGIGALCRERGL-LYVVDNTMTSP 173 (397)
T ss_pred cCCEEEEECC----CC----HHHHHHhC------CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCC-EEEEECCcccc
Confidence 8999999943 22 68888888 5789999999999999999999999999999999 79999998776
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCcccc----CCCCCceeccCCC-Cc-ccccccccccCcccccc
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSS----DMHHPVVSHEFGN-GL-PIESAWIGTRDYSAQLV 305 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~----~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 305 (452)
. .++...+++|+++.|++|+++| +| +|.+++.+..... .+...+. .+.. .. ................+
T Consensus 174 ~-~~~~~~~gaDivv~S~sK~~~g-~g~~igg~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~~~~ 249 (397)
T PRK05939 174 W-LFRPKDVGASLVINSLSKYIAG-HGNALGGAVTDTGLFDWSAYPNIFPAYR--KGDPQQWGLTQIRKKGLRDMGATLS 249 (397)
T ss_pred c-ccCccccCCEEEEecCeecccC-CCCeEEEEEecCcccccccccchhhhhh--ccchhhHHHHHHHHHHHHhcCCCCC
Confidence 4 3455566899999999998655 44 4554443222111 0000000 0000 00 00000000001111222
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCCh
Q 012991 306 IPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGE 370 (452)
Q Consensus 306 ~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 370 (452)
...+....+.+ +.+..-.++..+++..+.++|++.|.++ |..|. ...++++.|.+. +.
T Consensus 250 p~~a~l~~rgl-~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~------~~ 322 (397)
T PRK05939 250 SEAAHRIAIGA-ETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELA------DG 322 (397)
T ss_pred HHHHHHHHcCc-CcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeC------CH
Confidence 23332222211 1344445566778889999999887663 43331 135888999885 22
Q ss_pred hhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 371 DDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 371 ~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+..++.+.|. -+......+... +....+.... .++..+..++.+|+|++. ||++.+++.|++.++
T Consensus 323 ~~~~~f~~~l~-l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGl----Ed~~dLi~dl~~Al~ 395 (397)
T PRK05939 323 IDCFDFLNRLK-LVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGI----EDEADLIADFEQALD 395 (397)
T ss_pred HHHHHHHHhCC-cceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence 24456666663 122222211110 0000000000 011225567899999984 567777777777664
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=191.91 Aligned_cols=310 Identities=14% Similarity=0.157 Sum_probs=193.0
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN 130 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g 130 (452)
+++.+.+++.+.... . ..|.+.....++++++++++|.+ .+++++||++++.+++.++ +.+|
T Consensus 12 p~~~~~~a~~~~~~~-----~--~~Y~~~~~~~~L~~~la~~~g~~---~~~v~~~g~~a~~~~l~~~--------~~~g 73 (333)
T PRK10534 12 PSRAMLEAMMAAPVG-----D--DVYGDDPTVNALQDYAAELSGKE---AALFLPTGTQANLVALLSH--------CERG 73 (333)
T ss_pred CCHHHHHHHHhccCC-----C--cccCCCHHHHHHHHHHHHHhCCC---eEEEeCchHHHHHHHHHHh--------cCCC
Confidence 555688888653321 1 12335567899999999999995 4468888888888777765 5789
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhc-CcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRA-GGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
|+|+++.+.|...+.... +... +.+++.++. ++++.+ +++|+++++..+....++++|++++++ +|.++|
T Consensus 74 d~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~ 145 (333)
T PRK10534 74 EEYIVGQAAHNYLYEAGG--AAVLGSIQPQPIDA----AADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLP 145 (333)
T ss_pred CeeEEechhhhhHhcCCc--hHHhcCceEEeecC----CCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecC
Confidence 999998888864332210 1112 356666633 333344 888988884211111268999999765 599998
Q ss_pred HHHH---HHHHHHcCCCEEEEecccccCCc---ccccc--ccCccEEEEcCcccCcCCCCcE-EEEEecCccccCCCCCc
Q 012991 209 VRKL---VKICRDEGVDQVFVDAAHAMGSI---KIDVK--EIGADFYVSNLHKWFFCPPSVA-FLYCRKSILSSDMHHPV 279 (452)
Q Consensus 209 l~~i---~~l~~~~~~~~~ivD~a~~~g~~---~~~~~--~~~~d~~~~s~~K~l~g~~G~G-~l~~~~~~~~~~l~~~~ 279 (452)
.++| .++|+++++ ++++|+++..+.. ..... ....|.++.|+||. +|.+ +| +++.++++++. + ...
T Consensus 146 ~~~l~~i~~~~~~~~~-~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~-~~~~-~G~~~~~~~~~i~~-~-~~~ 220 (333)
T PRK10534 146 REYLKQAWEFTRERNL-ALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKG-LGTP-VGSLLVGNRDYIKR-A-RRW 220 (333)
T ss_pred HHHHHHHHHHHHHcCC-eEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcC-CCCc-ccceEEcCHHHHHH-H-HHH
Confidence 7654 678899999 7999998764321 11111 01246666789996 5554 46 56677777765 2 111
Q ss_pred eeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEE
Q 012991 280 VSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMV 359 (452)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 359 (452)
.. .+.+..+... .++.+++..+.. .....++..+.++++.+.|.++ |+++..+ . ++++++
T Consensus 221 ~~-----------~~~~~~~~~~-~~~a~~~~~l~~----~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~-~--~nfv~~ 280 (333)
T PRK10534 221 RK-----------MTGGGMRQAG-ILAAAGLYALKH----NVARLQEDHDNAAWLAEQLREA-GADVMRQ-D--TNMLFV 280 (333)
T ss_pred HH-----------HhCCchhhHH-HHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHhC-CCccCCC-C--ceEEEE
Confidence 00 0001111111 112222222221 1122333455678999999987 7776544 2 778888
Q ss_pred EcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 360 GLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.++ ..+..++.+.|.++ ||.++.+ ..+|++.+...|.+++++++++|+++
T Consensus 281 ~~~-------~~~~~~~~~~l~~~-gi~v~~~----------------------~~~rl~~~~r~t~e~~~~~~~~l~~~ 330 (333)
T PRK10534 281 RVG-------EEQAAALGEYMRER-NVLINAS----------------------PIVRLVTHLDVSREQLAEVVAHWRAF 330 (333)
T ss_pred ECC-------chhHHHHHHHHHHc-CeeecCC----------------------ceEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 875 22456788888765 9998521 25788887667999999999999977
Q ss_pred Hh
Q 012991 440 VE 441 (452)
Q Consensus 440 ~~ 441 (452)
+.
T Consensus 331 ~~ 332 (333)
T PRK10534 331 LA 332 (333)
T ss_pred hc
Confidence 64
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-22 Score=191.27 Aligned_cols=305 Identities=13% Similarity=0.129 Sum_probs=196.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..++++++++++.+. +++++++||++|+.+++. + +++||+|+++.+.|.+....+......
T Consensus 48 Y~R~~~p~~~~le~~lA~leg~---~~~v~~~sG~aAi~~~l~-~--------l~~GD~VI~~~~~yg~~~~~~~~~~~~ 115 (364)
T PRK07269 48 YTRTKNPTRAKLEETLAAIESA---DYALATSSGMSAIVLAFS-V--------FPVGSKVVAVRDLYGGSFRWFNQQEKE 115 (364)
T ss_pred eeCCCCccHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHH-H--------hCCCCEEEEecCCcCchHHHHHHHHhc
Confidence 4555566789999999999987 589999999999998885 3 489999999999998765444432222
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.+.++.+. .+ ++++++++ +++|++|++++|+||+|.+.|+++|+++|+++|+ ++++|++++.+
T Consensus 116 ~~~~~~~~-----~d-----~~~l~~~i------~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi-~vvvD~t~~~~ 178 (364)
T PRK07269 116 GRFHFTYA-----NT-----EEELIAAI------EEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGA-KVIVDNTFYSP 178 (364)
T ss_pred CcEEEEec-----CC-----HHHHHHhc------CcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 23332222 11 57888888 5789999999999999999999999999999999 79999997765
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecC-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKS-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
..... -..++|++++|++|+++|... .|+++.+++ +.++ +. .. .. ..|.. .+-...+.++
T Consensus 179 ~~~~p-l~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~-~~-~~-~~-----------~~G~~--~s~~~a~l~~ 241 (364)
T PRK07269 179 IYQRP-IELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEK-LF-YN-LN-----------TTGAV--LSPFDSYLLM 241 (364)
T ss_pred ccCCc-hhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHH-HH-HH-HH-----------HhCCC--CCHHHHHHHH
Confidence 43222 245899999999998766443 467676543 3332 11 00 00 00110 0111111222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEee
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVP 389 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~ 389 (452)
.-++ .++...++..+++..+.++|++.+.+ ++..|.. ++++.|.+. +.....++.+.|.- +.+...
T Consensus 242 ~~L~----tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~--gg~~sf~~~------~~~~~~~f~~~l~~-~~~~~s 308 (364)
T PRK07269 242 RGLK----TLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGK--GGMISFKVA------DETRIPHILNSLKV-FTFAES 308 (364)
T ss_pred cCCC----cHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCc--CcEEEEEEC------CHHHHHHHHHhCCc-ceEccC
Confidence 2222 35666777889999999999988876 4554543 788898874 22334566666632 333332
Q ss_pred ecccC-----CCCCCC--CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 390 IHYQA-----PKDDGQ--PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 390 ~~~~~-----~~~~~~--~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+... +....+ .....+...+..++.+|+|++ .||++.+++.|++.++
T Consensus 309 lG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvG----lE~~~dli~dl~~al~ 363 (364)
T PRK07269 309 LGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIG----IEDARDLIADLKQALE 363 (364)
T ss_pred CCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHhc
Confidence 21110 000000 000011123556789999998 4567777777776653
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=193.10 Aligned_cols=328 Identities=16% Similarity=0.132 Sum_probs=203.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++.++++.|.+ ..+++++|++|+.+++.++ +++||+|+++.+.|++....+......
T Consensus 52 y~r~~~pt~~~Le~~lA~l~g~~---~~l~~ssG~~Ai~~al~al--------~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~ 120 (425)
T PRK06084 52 YTRIMNPTNDVLEQRVAALEGGV---GALAVASGMAAITYAIQTI--------AEAGDNIVSVAKLYGGTYNLLAHTLPR 120 (425)
T ss_pred ccCCCCchHHHHHHHHHHHhCCC---ceeEehhHHHHHHHHHHHH--------hCCCCEEEEeCCCcchHHHHHHHhccc
Confidence 55555666789999999999974 5678889999999999887 488999999999998776666543344
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++.+++ ..+ ++++++++ .+++++|++++++||+|.+.|+++|.++|+++|+ ++|+|++++.+
T Consensus 121 ~gi~v~~~d----~~d----~e~le~ai------~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i-~vVvD~a~a~~ 185 (425)
T PRK06084 121 IGIETRFAA----HDD----IAALEALI------DERTKAVFCESIGNPAGNIIDIQALADAAHRHGV-PLIVDNTVATP 185 (425)
T ss_pred ceeEEEEEC----CCC----HHHHHHHh------ccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 577777773 222 68888888 5678999999999999999999999999999999 89999999877
Q ss_pred CccccccccCccEEEEcCcccCcCCCC-cEEEEE-ecCccccCCCCC--cee---cc-CCCCccc------------ccc
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS-VAFLYC-RKSILSSDMHHP--VVS---HE-FGNGLPI------------ESA 293 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G-~G~l~~-~~~~~~~~l~~~--~~~---~~-~~~~~~~------------~~~ 293 (452)
..... ..+++|+++.|++||++|+.. +|.+++ ++.......... .+. .. ++..... ...
T Consensus 186 ~~~~p-~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (425)
T PRK06084 186 VLCRP-FEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVP 264 (425)
T ss_pred ccCCh-hhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHH
Confidence 65322 246899999999998665432 344444 332110000000 000 00 0000000 000
Q ss_pred cccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------cc-ccceE
Q 012991 294 WIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EI-CAAMV 357 (452)
Q Consensus 294 ~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~-~~~~~ 357 (452)
..+.....+-...+..++-++ .+....++..+++..+.+.|++.+.+. |..|. .. .++++
T Consensus 265 ~~~~g~~l~~~~a~l~lrgl~----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~ 340 (425)
T PRK06084 265 LRNMGAALSPFNAFLILQGLE----TLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASIL 340 (425)
T ss_pred HHhcCCCCCHHHHHHHHcCcC----cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEE
Confidence 001111111111111222222 456667778899999999999988763 44431 02 46789
Q ss_pred EEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHH
Q 012991 358 MVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~ 430 (452)
.|.+.. +.....++.+.|. -+.+.+..+... +....+.... .+++.+..++.+|+|++ .||.+
T Consensus 341 s~~~~~-----~~~~~~~f~~~l~-l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svG----lEd~~ 410 (425)
T PRK06084 341 SFGIKG-----GQAAGARFIDALK-LVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIG----IEHID 410 (425)
T ss_pred EEEecC-----CHHHHHHHHHhCC-cceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec----cCCHH
Confidence 998851 1223556777773 344444322110 0000000000 01123566789999998 46677
Q ss_pred HHHHHHHHHHhc
Q 012991 431 KFRDAVILLVEE 442 (452)
Q Consensus 431 ~l~~~l~~~~~~ 442 (452)
.|++.|++.++.
T Consensus 411 dLi~dl~~Al~~ 422 (425)
T PRK06084 411 DIIADLAQALDA 422 (425)
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=189.88 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=138.1
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++++++++|.+ ..++++||++|+..++.++ +++||+|+++.+.|++....+...+..
T Consensus 51 ysr~~~p~~~~le~~lA~l~g~~---~~v~~~sG~~Ai~~al~~l--------~~~Gd~Vl~~~~~y~~t~~~~~~~~~~ 119 (418)
T TIGR01326 51 YSRLMNPTTDVLEQRIAALEGGV---AALAVASGQAAITYAILNL--------AQAGDNIVSSSYLYGGTYNLFKHTLKR 119 (418)
T ss_pred eECCCChhHHHHHHHHHHHhCCC---eEEEEccHHHHHHHHHHHH--------hCCCCEEEEECCCcHHHHHHHHHHHHH
Confidence 44445566789999999999974 6789999999999999876 488999999999998887777766788
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++ .++ ++++++++ .+++++|++++++||+|.+.|+++|.++|+++|+ ++|+|++++.+
T Consensus 120 ~G~~v~~v~----~~d----~~~l~~~l------~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i-~livD~t~~~~ 184 (418)
T TIGR01326 120 LGIEVRFVD----PDD----PEEFEKAI------DENTKAVFAETIGNPAINVPDIEAIAEVAHAHGV-PLIVDNTFATP 184 (418)
T ss_pred cCcEEEEEC----CCC----HHHHHHhc------CcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCC-EEEEECCCchh
Confidence 899999984 222 68888888 5689999999999999999999999999999999 79999999876
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecC
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKS 269 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~ 269 (452)
..... ...++|+++.|++|++ +++| +|+++++++
T Consensus 185 ~~~~~-l~~g~Divv~S~sK~l-~g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 185 YLCRP-IDHGADIVVHSATKYI-GGHGTAIGGVIVDGG 220 (418)
T ss_pred hcCCc-hhcCCeEEEECccccc-cCCccceEEEEEecc
Confidence 43222 2457999999999985 5555 677777553
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=188.76 Aligned_cols=312 Identities=12% Similarity=0.080 Sum_probs=200.1
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.+++.++.+.+.+ ..+++++|++|+..++.++ +++||+|+++++.|++....+..++++
T Consensus 58 YsR~gnPt~~~Le~~la~le~~~---~~v~~sSG~aAi~~~l~al--------l~~GD~Vlv~~~~Y~~~~~l~~~~l~~ 126 (395)
T PRK05967 58 YGTRGTPTTDALCKAIDALEGSA---GTILVPSGLAAVTVPFLGF--------LSPGDHALIVDSVYYPTRHFCDTMLKR 126 (395)
T ss_pred cCCCCChHHHHHHHHHHHHhCCC---CEEEECcHHHHHHHHHHHh--------cCCCCEEEEccCCcHHHHHHHHHHHHh
Confidence 44555677888999999988763 3466666899999999877 699999999999999987766566788
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++..++. ++ .+.+++++ .++|++|++++|+||++.+.|+++|+++|+++|+ ++++|++++.+
T Consensus 127 ~Gi~v~~vd~----~~----~e~l~~al------~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~-~vvVD~t~a~p 191 (395)
T PRK05967 127 LGVEVEYYDP----EI----GAGIAKLM------RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGA-IVMMDNTWATP 191 (395)
T ss_pred cCeEEEEeCC----CC----HHHHHHhc------CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCC-EEEEECCccCc
Confidence 8999999842 22 36788888 5789999999999999999999999999999999 89999998865
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
.. .....+|+|+++.|.+|++.|-.. .|++..+++..++ + ... .. ..|.. .+-..+..
T Consensus 192 ~~-~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~-l-~~~-~~-----------~~G~~-----~~p~da~l 251 (395)
T PRK05967 192 LY-FRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQ-L-LEA-HG-----------TLGLC-----AGPDDTYQ 251 (395)
T ss_pred ee-cChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHH-H-HHH-HH-----------HcCCC-----CCHHHHHH
Confidence 32 233346899999999998544222 5666555543332 1 000 00 01211 11112222
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHHH
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
.++.+ +.+.--.++..+++..+.+.|++.|.++ |..|. ...++++.|.++.... .+...+.++
T Consensus 252 ~~rgl-~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~-~~~~~~~~f 329 (395)
T PRK05967 252 ILRGL-RTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPE-KGKAKAHAF 329 (395)
T ss_pred HHcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCc-ccHHHHHHH
Confidence 22210 1234445667788888999999988763 44442 1247889998851000 002345567
Q ss_pred HHHHhhhcceEeeecccCCCCCCCCC-CCC---CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQAPKDDGQPQ-AGA---RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~~~~~~~~~-~~~---~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|. -+.+.+..+....- -+. ... ....+..++.+|+|++. ||.+.+++.|.+.++
T Consensus 330 ~~~l~-l~~~~~slG~~~sL---i~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~dLi~Dl~~Al~ 390 (395)
T PRK05967 330 LDALE-IFGLGYSWGGYESL---ALHVKLGDRTVAKAPYAGPVIRLQIGL----EDVPDLKADLERGFA 390 (395)
T ss_pred HHhCC-cceEccCCCCccee---eeeCCCChhHhhhccCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 77763 23444432211100 000 000 00113345799999985 455556666665554
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=193.64 Aligned_cols=366 Identities=13% Similarity=0.099 Sum_probs=211.4
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHH-HHHHhHhCC--CCCC--cEEEecChhHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESR-AAVKDLINA--DDVG--EISLVDNATTAAAI 113 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~--~~~~--~i~~t~g~t~a~~~ 113 (452)
+++.|..+.++..|+..++++.+..... .++. +....+..+++. +.+.+.++. ..++ +|++|+|+++|+..
T Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~Y~~---p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~ 170 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFLYEMCDGIIGD-NYPV---PDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCY 170 (521)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHhhcC-CCCC---CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHH
Confidence 4678888887755655666655543211 1111 112222233322 233333332 2233 89999999999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh----HHH-HHHHHHHHhccccCC
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE----EEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~----~~~-~~~l~~~i~~~~~~~ 188 (452)
++.++... ..+.+||+|+++.|.|+........ ...|.+++.++.+. .+.+ ..+ .+++++++ +
T Consensus 171 ~~~~l~~~---~ll~pGD~Vlv~~P~y~~y~~~~~l--~~~g~~vv~i~~~~-~~~~g~~~~~~d~~~l~~~~------~ 238 (521)
T TIGR03801 171 IFDSLKAN---ELLKKGDKIALMTPIFTPYLEIPEL--PRYDFEVVRIKADE-MTEDGTHTWQYPDKELEKLR------D 238 (521)
T ss_pred HHHHHhHh---hcCCCCCEEEEeCCCcHHHHHHHHH--hcCCcEEEEeeccc-ccccccccCCCCHHHHHHhc------C
Confidence 88863211 0268999999999999886554432 22467777775421 1111 334 78888776 6
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHc--CCCEEEEecccccCCcc-cccccc--CccEEEEcCcccCcCCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDE--GVDQVFVDAAHAMGSIK-IDVKEI--GADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~--~~~~~ivD~a~~~g~~~-~~~~~~--~~d~~~~s~~K~l~g~~G 260 (452)
+++++|++++|+||||.+++ +++|+++|++| ++ ++|+|++++.-... .++... .-.+++.|+||. +|.+|
T Consensus 239 ~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l-~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~-fg~~G 316 (521)
T TIGR03801 239 PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDL-MILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKY-FGATG 316 (521)
T ss_pred CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCe-EEEECCCchhhcccccchhhhCCCCEEEEEcchhh-ccCch
Confidence 78999999999999999998 55678889987 89 79999998632211 111111 234788899996 78777
Q ss_pred --cEEEEEecC-----cccc-------CCCCCceecc-------CCCCcc-----cccccccccCccccc--cHHHHHHH
Q 012991 261 --VAFLYCRKS-----ILSS-------DMHHPVVSHE-------FGNGLP-----IESAWIGTRDYSAQL--VIPSAVTF 312 (452)
Q Consensus 261 --~G~l~~~~~-----~~~~-------~l~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~~--~~~~al~~ 312 (452)
+|+++.+++ ++.. .+...+.+.. |..+.. .........+...+. ++.++...
T Consensus 317 ~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~al 396 (521)
T TIGR03801 317 WRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFAL 396 (521)
T ss_pred hhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 899888754 2211 0000000000 000000 000011112222222 22122233
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc--cC--------ChhhHHHHHHHHhh
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR--VM--------GEDDALRLRGHLRV 382 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~l~~~L~~ 382 (452)
+.......+.+++.++++++.+.+.| |+.+...+...+.++++.++.... .+ ...+..+++..|.+
T Consensus 397 l~~~~~y~~~~~~~~~~R~~~l~~~L----g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~ 472 (521)
T TIGR03801 397 MDKENAYKAETKDICRRREKLLFRGL----GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAE 472 (521)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhc----CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHH
Confidence 32111135556666777777777666 554322122226778887763210 00 01246788888888
Q ss_pred hcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 383 RFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 383 ~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.||.+.++..+. ...+++|+|+.. .+++++++..+.|++++++
T Consensus 473 e~gV~v~PG~~Fg---------------~~~~~vRisla~-l~~~~~~~~~~rl~~~~~~ 516 (521)
T TIGR03801 473 ETGIVLLPGGGFG---------------GPEWSVRVSLAN-LNEYDYAEIGRAIRKILDE 516 (521)
T ss_pred hCCEEEeCchhcC---------------CCCCeEEEEecC-CCHHHHHHHHHHHHHHHHH
Confidence 8899997776652 224679999974 3688899999999998865
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=188.67 Aligned_cols=211 Identities=14% Similarity=0.197 Sum_probs=154.4
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhh-hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYF-NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
..+.+|+++.+.++.|+++.+++.+++..+. +...... ......++.+++.+++++|++ + .++++++++|+.+++
T Consensus 79 atg~v~~tNlg~s~l~~~vieAv~~~~~~y~-~l~~~l~~g~~g~r~~~le~~lA~l~gae--~-alvv~sg~aAi~l~l 154 (454)
T TIGR00474 79 ATGVVLHTNLGRAPLAEEAIEAVTDAARGYS-NLEYDLETGKRGSRYSHVEGLLCELTGAE--D-ALVVNNNAAAVLLAL 154 (454)
T ss_pred CCCcEEeccCCCCCCCHHHHHHHHHHHhccc-chhccccccccchHHHHHHHHHHHHhCCC--c-EEEECCHHHHHHHHH
Confidence 3466777777788999999999999887542 2111110 111234688999999999995 3 456788888998888
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHH--HHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVK--KSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~--~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
.++ .+|++|++++.+|..+. ..+.......|+++++++. ++. ..++++++++ +++|++
T Consensus 155 ~~l---------~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~----~~~-~~l~dle~aI------~~~T~l 214 (454)
T TIGR00474 155 NTL---------AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGT----TNR-THLKDYEDAI------TENTAL 214 (454)
T ss_pred HHh---------CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCC----CCC-CCHHHHHHhc------CcCCEE
Confidence 643 78999999988764221 1122235678999999943 211 1178899999 688999
Q ss_pred EEEeccCCCC--c--ccccHHHHHHHHHHcCCCEEEEecccc---------cCCccc--cccccCccEEEEcCcccCcCC
Q 012991 194 AIIDHITSMP--C--VVIPVRKLVKICRDEGVDQVFVDAAHA---------MGSIKI--DVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 194 v~~~~~~n~t--G--~~~~l~~i~~l~~~~~~~~~ivD~a~~---------~g~~~~--~~~~~~~d~~~~s~~K~l~g~ 258 (452)
|+++|++|++ | .+.|+++|+++||++|+ ++++|.+.+ .+..+. +...+++|++++|++||++||
T Consensus 215 v~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~-~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp 293 (454)
T TIGR00474 215 LLKVHTSNYRIVGFTEEVSIAELVALGREHGL-PVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP 293 (454)
T ss_pred EEEEccCcccccCCCCCCCHHHHHHHHHHcCC-eEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC
Confidence 9999999974 6 47899999999999999 899997532 122222 444578999999999998788
Q ss_pred CCcEEEEEecCcccc
Q 012991 259 PSVAFLYCRKSILSS 273 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~ 273 (452)
. .|+++++++.++.
T Consensus 294 ~-~G~i~g~~~~i~~ 307 (454)
T TIGR00474 294 Q-AGIIVGKKELIER 307 (454)
T ss_pred e-EEEEEECHHHHHh
Confidence 6 5999999887764
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-21 Score=180.35 Aligned_cols=341 Identities=15% Similarity=0.099 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCE
Q 012991 53 KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDT 132 (452)
Q Consensus 53 ~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~ 132 (452)
....+++.+.+..-.-.. -+..+++++.+++++|++ ..+.++|||.|+++++.++. +.+||+
T Consensus 15 ~~e~~~v~~vl~sg~i~~--------G~~v~~FE~~~ae~~G~k---~ava~~sgT~AL~laL~al~-------ig~GDe 76 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG--------GPFVRRFEQAFAEYLGVK---YAVAVSSGTAALHLALLALA-------IGPGDE 76 (374)
T ss_pred hHHHHHHHHHHHcCCeec--------ChHHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHhcC-------CCCCCE
Confidence 445566666654321111 234788999999999995 78899999999999999883 699999
Q ss_pred EEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHH
Q 012991 133 VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRK 211 (452)
Q Consensus 133 Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~ 211 (452)
||++..+|.+...++.+ .|.++++++++ . +...+ ++.+|++| +++||+|+..|.. |...++++
T Consensus 77 VI~ps~TfvATan~i~~----~Ga~PVFvDid--~-~T~nid~~~ie~aI------t~~tKAIipVhl~---G~~~dm~~ 140 (374)
T COG0399 77 VIVPSFTFVATANAVLL----VGAKPVFVDID--P-DTLNIDPDLIEAAI------TPRTKAIIPVHLA---GQPCDMDA 140 (374)
T ss_pred EEecCCchHHHHHHHHH----cCCeEEEEecC--C-cccCCCHHHHHHHc------ccCCeEEEEehhc---cCCCCHHH
Confidence 99999999998888765 49999999763 1 22445 99999999 7889999999875 99999999
Q ss_pred HHHHHHHcCCCEEEEecccccCCcccccccc-CccEEEEc--CcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCc
Q 012991 212 LVKICRDEGVDQVFVDAAHAMGSIKIDVKEI-GADFYVSN--LHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGL 288 (452)
Q Consensus 212 i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~-~~d~~~~s--~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~ 288 (452)
|.++|++||+ +||.|+||+.|...-+-..- -.|+.++| ..|.+....| |.++.+++.+.. ....+.. .|...
T Consensus 141 i~~la~~~~l-~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEG-Gav~tnd~ela~-k~~~lr~--hG~~~ 215 (374)
T COG0399 141 IMALAKRHGL-PVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEG-GAVVTNDEELAE-KARSLRN--HGLSR 215 (374)
T ss_pred HHHHHHHcCC-eEEEEcchhccCeecCcccccccceEEEEecCCCCccccCc-eEEEeCCHHHHH-HHHHHHH--hCcCC
Confidence 9999999999 79999999999875432211 13555555 5598766665 888887655543 1111111 11110
Q ss_pred ----ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc---ccceEEEEc
Q 012991 289 ----PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI---CAAMVMVGL 361 (452)
Q Consensus 289 ----~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~ 361 (452)
-......|...-..-+.++..+..+. .++++.++-++..+.+.+.|.+++++.+...+.. ...+..+.+
T Consensus 216 ~~~~~y~~~~~G~N~rm~~iqAAigl~QL~----~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~ 291 (374)
T COG0399 216 DAVFKYLHEELGYNYRLTEIQAAIGLAQLE----RLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILV 291 (374)
T ss_pred CccccceeeecccccCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEe
Confidence 01111223222222222223344444 3567777778888999999988866655444322 233344444
Q ss_pred CCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC-CCCC------CCCCCCCCccceEEecccccCCHHHHHHHHH
Q 012991 362 PSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG-QPQA------GARDKDGIITGYARISHQVYNTLEDYEKFRD 434 (452)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~-~~~~------~~~~~~~~~~~~iRis~~~~~t~~di~~l~~ 434 (452)
+. .+.+.+.+.+.|+++ ||.....+.+.+... +... .+-.+.......+.+.++...+.+|++++++
T Consensus 292 ~~-----~~~~R~~l~~~L~~~-gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~ 365 (374)
T COG0399 292 DE-----EGISRDALMESLKEA-GVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIE 365 (374)
T ss_pred cC-----CCCCHHHHHHHHHhC-CCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHH
Confidence 42 135678899999775 777422222222110 0000 0000011234568888888889999999999
Q ss_pred HHHHHHhc
Q 012991 435 AVILLVEE 442 (452)
Q Consensus 435 ~l~~~~~~ 442 (452)
+|++++..
T Consensus 366 ~l~~~~~~ 373 (374)
T COG0399 366 ALKEVLGS 373 (374)
T ss_pred HHHHHhcc
Confidence 99998753
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=188.85 Aligned_cols=323 Identities=14% Similarity=0.136 Sum_probs=207.7
Q ss_pred hHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEE
Q 012991 79 RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSV 158 (452)
Q Consensus 79 ~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v 158 (452)
.+..+.+++.++++.|.. ..+.++||++|+.+++.++ +++||+||++.+.|.+....+.....+.|+++
T Consensus 60 nPtv~~lE~~la~leg~~---~av~~~SG~aAi~~al~al--------l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v 128 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGV---GAVATASGQAAIMLAVLNI--------CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDV 128 (432)
T ss_pred CcHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHh--------cCCCCEEEECCCchHHHHHHHHHHHHHCCCEE
Confidence 456889999999999984 5788999999999999876 58999999999999988777665457789999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc
Q 012991 159 VEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID 238 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~ 238 (452)
.+++. ..+ +++++++| +++|++|++++++||++.+.|+++|+++|+++|+ ++++|++.+.+.. ..
T Consensus 129 ~~vd~----~~d---~~~l~~~I------~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi-~livD~T~~tP~~-~~ 193 (432)
T PRK06702 129 TFFNP----NLT---ADEIVALA------NDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEV-PFIVDNTLATPYL-CQ 193 (432)
T ss_pred EEECC----CCC---HHHHHHhC------CcCCeEEEEEcCCCccccccCHHHHHHHHHHcCC-EEEEECCCCchhh-CC
Confidence 99943 111 68899999 6889999999999999999999999999999999 8999998864432 22
Q ss_pred ccccCccEEEEcCcccCcCCCC-c-EEEEEecCcccc-----CCCCC---c----eeccCCCCc----cc--cccccccc
Q 012991 239 VKEIGADFYVSNLHKWFFCPPS-V-AFLYCRKSILSS-----DMHHP---V----VSHEFGNGL----PI--ESAWIGTR 298 (452)
Q Consensus 239 ~~~~~~d~~~~s~~K~l~g~~G-~-G~l~~~~~~~~~-----~l~~~---~----~~~~~~~~~----~~--~~~~~~~~ 298 (452)
.-..++|+++.|.+||++|..+ + |+++.+..+--. .+..+ + ....++... .. .....|.
T Consensus 194 pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 272 (432)
T PRK06702 194 AFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGN- 272 (432)
T ss_pred hhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccC-
Confidence 3355899999999999776544 3 444333321100 00000 0 000000000 00 0000121
Q ss_pred CccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc---------------ccccceEEEEcC
Q 012991 299 DYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP---------------EICAAMVMVGLP 362 (452)
Q Consensus 299 ~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~~~~~~~~ 362 (452)
..+-.....+++-++ .++...++..+++..+.+.|++.+.+. +..|. ...++++.|.++
T Consensus 273 -~~sp~~a~l~~rgL~----Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~ 347 (432)
T PRK06702 273 -CMSPFNAYISNIGLE----TLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIK 347 (432)
T ss_pred -CCCHHHHHHHHhccC----cHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEec
Confidence 111111122222222 456667777899999999999988764 43331 124689999885
Q ss_pred CccccCChhhHHHHHHHHhhhcceEeeeccc-CC----CCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHH
Q 012991 363 SRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ-AP----KDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDA 435 (452)
Q Consensus 363 ~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~-~~----~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~ 435 (452)
. +...+.++.+.|. -+.+.+..+.. .. .+..+..... ++..+..++.+|+|++ .||+|.+++.
T Consensus 348 ~-----~~~~~~~f~~~l~-l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG----lEd~eDLi~D 417 (432)
T PRK06702 348 G-----GLEAAKEFIANVK-LATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVG----IEDVSDIIAD 417 (432)
T ss_pred C-----CHHHHHHHHHhCc-cceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHH
Confidence 1 1234556777763 34544433211 10 0000101000 1112556789999998 5678888888
Q ss_pred HHHHHhcc
Q 012991 436 VILLVEEG 443 (452)
Q Consensus 436 l~~~~~~~ 443 (452)
|++.++.+
T Consensus 418 l~~Al~~~ 425 (432)
T PRK06702 418 LEAALVGG 425 (432)
T ss_pred HHHHHhcC
Confidence 88888765
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=185.21 Aligned_cols=211 Identities=14% Similarity=0.172 Sum_probs=154.3
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhh-hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYF-NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
..+.+|+++.+.++.|+++.+++.+++.... +...... ....+.++.+++.+++++|++ ..++++++++|+.+++
T Consensus 84 atg~v~~tNlg~s~l~~~v~eav~~~~~~~~-~le~~l~~g~~g~r~~~~e~~lA~l~Gae---~a~vv~sgtaAl~l~l 159 (464)
T PRK04311 84 ATGVVLHTNLGRALLSEAAIEAVTEAARGYS-NLEYDLATGKRGSRDRALAALLCALTGAE---DALVVNNNAAAVLLAL 159 (464)
T ss_pred CCccEEeccCCCCCCCHHHHHHHHHHHhccc-ccccchhhcccchHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHH
Confidence 4567777777778999999999998875432 1111110 011234678999999999995 5678888999999888
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHH--HHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVK--KSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~--~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
.++ .+|++|++++.+|.++. ..+.......|+++++++.. +. ..+++++++| +++|++
T Consensus 160 ~~l---------~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~----~~-t~~~dle~aI------~~~Tkl 219 (464)
T PRK04311 160 NAL---------AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT----NR-THLRDYEQAI------NENTAL 219 (464)
T ss_pred HHh---------CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC----CC-CCHHHHHHhc------CccCeE
Confidence 754 78999999988776321 22323346789999999532 11 1178899999 678999
Q ss_pred EEEeccCCC--Cc--ccccHHHHHHHHHHcCCCEEEEeccccc---------CCccc--cccccCccEEEEcCcccCcCC
Q 012991 194 AIIDHITSM--PC--VVIPVRKLVKICRDEGVDQVFVDAAHAM---------GSIKI--DVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 194 v~~~~~~n~--tG--~~~~l~~i~~l~~~~~~~~~ivD~a~~~---------g~~~~--~~~~~~~d~~~~s~~K~l~g~ 258 (452)
|+++|++|+ +| ...|+++|+++||+||+ ++++|++++. +..+. +...+++|++++|++||++||
T Consensus 220 V~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi-~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp 298 (464)
T PRK04311 220 LLKVHTSNYRIEGFTKEVSLAELAALGKEHGL-PVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP 298 (464)
T ss_pred EEEEcCCCccccccCCcCCHHHHHHHHHHcCC-eEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC
Confidence 999999997 45 56899999999999999 8999985321 11121 222368999999999998777
Q ss_pred CCcEEEEEecCcccc
Q 012991 259 PSVAFLYCRKSILSS 273 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~ 273 (452)
. .|+++++++++++
T Consensus 299 ~-~G~i~g~~~li~~ 312 (464)
T PRK04311 299 Q-AGIIVGKKELIAR 312 (464)
T ss_pred c-eEEEEEcHHHHHH
Confidence 6 6999999888875
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-20 Score=183.06 Aligned_cols=341 Identities=11% Similarity=0.126 Sum_probs=200.2
Q ss_pred CCCCeEEecc-CCCC-CCcHHHHHHHHHHHHHHh-cCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINN-GSFG-SCPKSVLADQQKWQLKFL-QQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~-~~~~-~~p~~v~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.++.++.+.. +..+ ..++.|.+++.+.+..+. ..+.........+..+++++.|+++++. ..+++++|++|+.
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~~~~~~sG~~a~~ 119 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA----SVLTFTSCSAAHL 119 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC----CEEEECChHHHHH
Confidence 3444555532 2334 567889999999887653 1222211122466789999999999976 3455556677888
Q ss_pred HHHHHhhcccccCCCCCC-CEEEEeC-CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCc
Q 012991 113 IVLQQIGRGFTEGRFHRN-DTVLMLH-CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKM 190 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g-~~Vl~~~-~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 190 (452)
.++..+.... ..++ ..|++.+ ..|.++.. ...+ ...+.+++.++ ..+ ++++++.++ ++
T Consensus 120 ~ai~~~~~~~----~~~~~~~vi~~~~~~H~s~~~-~~~~-~~~~~~v~~~~----~~d----~~~l~~~~~------~~ 179 (402)
T PRK07505 120 GILPLLASGH----LTGGVPPHMVFDKNAHASLNI-LKGI-CADETEVETID----HND----LDALEDICK------TN 179 (402)
T ss_pred HHHHHHHhcc----cCCCCCCEEEEchhhhHhHHh-hhhh-hhcCCeEEEeC----CCC----HHHHHHHHh------cC
Confidence 7776543211 1222 2355554 45555422 1111 22356777773 333 678888873 45
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cc--c-cc--ccCccEEEEcCcccCcCCCC
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KI--D-VK--EIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~--~-~~--~~~~d~~~~s~~K~l~g~~G 260 (452)
++++++++++||+|.+.|+++|.++|+++++ ++|+|++|+.+.. .. + +. ..+..+++.|++|. +|+.|
T Consensus 180 ~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~-~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~-~~~~G 257 (402)
T PRK07505 180 KTVAYVADGVYSMGGIAPVKELLRLQEKYGL-FLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKA-FGASG 257 (402)
T ss_pred CCEEEEEecccccCCcCCHHHHHHHHHHcCC-EEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhh-hhccC
Confidence 6788888999999999999999999999999 8999999865211 11 1 11 11234677799997 55555
Q ss_pred cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 261 ~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
|+++. ++++++. + .... ....+.++++.....+..++++.+.+ +.+....++++++...+...+.
T Consensus 258 -g~~~~~~~~~~~~-~-~~~~---------~~~t~~~~~~~~a~aa~~a~l~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 323 (402)
T PRK07505 258 -GVIMLGDAEQIEL-I-LRYA---------GPLAFSQSLNVAALGAILASAEIHLS--EELDQLQQKLQNNIALFDSLIP 323 (402)
T ss_pred -eEEEeCCHHHHHH-H-HHhC---------CCceeCCCCCHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHHHH
Confidence 67655 4455543 1 1110 01112234444455555555554442 1444444444444433222211
Q ss_pred HHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 340 NAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
. ........+.++.++ +..++.++.+.|.++ ||.++....+.. ...+++||++
T Consensus 324 ~-------~~~g~~~~i~~~~~~------~~~~~~~~~~~l~~~-Gi~v~~~~~p~~-------------~~~~~~lRi~ 376 (402)
T PRK07505 324 T-------EQSGSFLPIRLIYIG------DEDTAIKAAKQLLDR-GFYTSPVFFPVV-------------AKGRAGLRIM 376 (402)
T ss_pred h-------cCCCCCCCEEEEEeC------CHHHHHHHHHHHHHC-CCeEeeecCCCC-------------CCCCceEEEe
Confidence 1 111111223333332 223467889999765 999976532211 1123689999
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
++..+|++|+++++++|++++.++
T Consensus 377 ~~~~~t~eei~~~~~~l~~~l~~~ 400 (402)
T PRK07505 377 FRASHTNDEIKRLCSLLKEILDEG 400 (402)
T ss_pred cCccCCHHHHHHHHHHHHHHHHhh
Confidence 999899999999999999998765
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=177.14 Aligned_cols=358 Identities=17% Similarity=0.137 Sum_probs=244.7
Q ss_pred HHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcC--Cch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQ--PDD-FYF--NSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 27 ~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~--~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
+.|.++...+ +..|.|= ++-...++.|++++-..+..-+.. |+. +|+ ..-++....+.++..++||++ ..=
T Consensus 16 ~~i~~e~~rq-~~~ieLI-ASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~--~an 91 (413)
T COG0112 16 EAIQQELERQ-REHIELI-ASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAE--YAN 91 (413)
T ss_pred HHHHHHHHHH-hhceeee-eccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCC--ccc
Confidence 4455555433 4455553 456678888999998877664332 333 233 234566777899999999996 333
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC-ChHHH-HHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA-SEEEI-INEFKK 179 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~-~~~l~~ 179 (452)
+-..||+.|+..++.++ ++|||+|+-.+..|.++...... ....|.-+..++. +.+ +.+.+ +|++++
T Consensus 92 VQPhSGs~AN~av~~Al--------l~pGDtimgm~l~~GGHltHg~~-v~~sG~~~~~v~Y--~vd~et~~IDyD~~~k 160 (413)
T COG0112 92 VQPHSGSQANQAVYLAL--------LQPGDTIMGLDLSHGGHLTHGSP-VNFSGKLFNVVSY--GVDPETGLIDYDEVEK 160 (413)
T ss_pred cCCCCchHHHHHHHHHH--------cCCCCeEecccCCCCCcccCCCC-CCccceeEEeEec--ccccccCccCHHHHHH
Confidence 55667888999999988 69999999766555443221111 1223555555555 455 33556 999999
Q ss_pred HHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCccc
Q 012991 180 GIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 180 ~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~ 254 (452)
.++ ..+|++|++- .+..-..+|++++.++|++.|+ ++++|.||-.|.+ +-++. .+|+++.|.||+
T Consensus 161 ~a~-----e~kPK~ii~G--~SaY~r~id~~~~reIad~VGA-~L~~DmAHiaGLVA~G~~p~P~~--~AdvVTtTTHKT 230 (413)
T COG0112 161 LAK-----EVKPKLIIAG--GSAYSRPIDFKRFREIADEVGA-YLMVDMAHVAGLIAGGVHPNPLP--HADVVTTTTHKT 230 (413)
T ss_pred HHH-----HhCCCEEEEC--ccccccccCHHHHHHHHHHhCc-eEEehHHHHHHHHhcccCCCCCC--ccceEeCCcccC
Confidence 987 4799999984 4455668899999999999999 8999999966543 32332 389999999999
Q ss_pred CcCCCCcEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 012991 255 FFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 255 l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~ 333 (452)
|.||+| |++++++ ++..+ +....+ .+- .|.|....+++...++..+.+. +++.+.+++.++++.
T Consensus 231 lrGPrG-G~Il~~~eel~kk-in~aVF----Pg~-------qggpl~HviAakaVa~~Eal~p--~fk~Ya~qVv~NAka 295 (413)
T COG0112 231 LRGPRG-GIILTNDEELAKK-INSAVF----PGL-------QGGPLMHVIAAKAVAFKEALEP--EFKEYAKQVVKNAKA 295 (413)
T ss_pred CCCCCc-eEEEeccHHHHHH-hhhhcC----Ccc-------CCChHHHHHHHHHHHHHHHcCh--hHHHHHHHHHHHHHH
Confidence 999998 9999987 44443 322222 111 1455555666666666666655 889999999999999
Q ss_pred HHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 334 MARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 334 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
|.+.|.+. |+++.+.. ...+.+.+.+.. .+.+.++....|. +.||.+..-..+...- ....+
T Consensus 296 LAe~l~~~-G~~vvsGg-TdnHl~lVDl~~-----~~~~Gk~ae~~L~-~~~It~NKN~iP~D~~----------~p~~t 357 (413)
T COG0112 296 LAEALKER-GFKVVSGG-TDNHLVLVDLRS-----KGLTGKKAEAALE-RAGITVNKNAIPFDPE----------SPFVT 357 (413)
T ss_pred HHHHHHHc-CCeEecCC-ccceEEEEEccc-----CCCCHHHHHHHHH-HcCEeeccCCCCCCCC----------CCCCC
Confidence 99999986 88877642 236677776641 2456777777774 5699985433221110 02456
Q ss_pred ceEEecccccCC----HHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNT----LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t----~~di~~l~~~l~~~~~~ 442 (452)
..|||+....+| ++|++.+.+.|.+++..
T Consensus 358 SGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 358 SGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred ccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 789999876654 67899999999888865
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=184.84 Aligned_cols=320 Identities=13% Similarity=0.144 Sum_probs=206.6
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccC--
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG-- 125 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~-- 125 (452)
.|...+.|.+++.+.+..... .+. ....+...++.++++++.+. +.++++++||+|+..++... +.+...
T Consensus 54 lGh~~p~v~~ai~~~~~~~~~-~~~---~~~~~~~~~l~~~l~~~~~~---~~~~~~~SGseA~e~Alk~a-~~~~~~~~ 125 (396)
T PRK04073 54 QGHRHPKIIQALKDQADKVTL-TSR---AFHSDQLGPWYEKVAKLTGK---DMVLPMNTGAEAVETAIKAA-RRWAYDVK 125 (396)
T ss_pred CCCCCHHHHHHHHHHHhhccc-ccc---ccCCHHHHHHHHHHHhcCCC---CeEEEcCChHHHHHHHHHHH-HHHhhhcc
Confidence 456777899999988765421 111 11234567788889988764 58999999999999998854 333100
Q ss_pred CC-CCCCEEEEeCCcchhHHHHHHHHHHhcCc---------EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 126 RF-HRNDTVLMLHCAFQAVKKSIQAYVTRAGG---------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 126 ~~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~---------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.. ..+++|+..+..|++.......+....+. .+..+ +..+ ++.+++.+ .+++++|+
T Consensus 126 g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~i------~~~~~~vi 191 (396)
T PRK04073 126 GVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKI----PYGD----LEALKAAI------TPNTAAFL 191 (396)
T ss_pred CCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEe----CCCC----HHHHHHhc------ccCeEEEE
Confidence 01 22368888888777654333221111000 11222 2221 57788877 46789999
Q ss_pred EeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC-CCcEEEE
Q 012991 196 IDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP-PSVAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~ 265 (452)
++.++|++|.+.| +++|.++|++||+ ++|+|++++ +|.. ..+.....+|++++ +|.++++ ..+|+++
T Consensus 192 iep~~~~~G~~~~~~~~l~~l~~l~~~~g~-lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig~~~ 268 (396)
T PRK04073 192 VEPIQGEAGINIPPEGFLKAARELCKEENV-LFIADEIQTGLGRTGKLFACDWDNVTPDMYIL--GKALGGGVFPISCVA 268 (396)
T ss_pred EcCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEecchhCCCcCcHHHHhhhcCCCCCEEEe--cccccCCCCcceEEE
Confidence 9999999999987 7899999999999 899999987 3321 12333445788775 5975543 2278999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++.+. + .... ....+ ..+...+.+..++++.+.+ +.+.++.+++++++.+.|.++ +..
T Consensus 269 ~~~~i~~~-~-~~~~---------~~~t~--~~~~~~~aaa~aaL~~~~~-----~~l~~~~~~~~~~l~~~L~~l-~~~ 329 (396)
T PRK04073 269 ANRDILGV-F-TPGS---------HGSTF--GGNPLACAVSIAALEVLEE-----EKLPERSLELGEYFKEQLKEI-DNP 329 (396)
T ss_pred EcHHHHhh-h-cCCC---------CCCCC--CCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHhh-cCC
Confidence 98887765 2 1110 00011 1222334444455665543 235677788899999999876 322
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
........+.++.+.++ .++.++.+.|.++ ||.+.. ..++++|++++..+|
T Consensus 330 ~i~~~~~~g~~~~~~~~--------~~~~~~~~~l~~~-Gv~~~~--------------------~~~~~iRi~p~l~~t 380 (396)
T PRK04073 330 MIKEVRGRGLFIGVELN--------EPARPYCEALKEE-GLLCKE--------------------THETVIRFAPPLVIT 380 (396)
T ss_pred cccceecceEEEEEEec--------chHHHHHHHHHHC-CeEEec--------------------CCCCEEEEECCcccC
Confidence 22222223667777664 1456788888764 999842 113689999998899
Q ss_pred HHHHHHHHHHHHHHH
Q 012991 426 LEDYEKFRDAVILLV 440 (452)
Q Consensus 426 ~~di~~l~~~l~~~~ 440 (452)
++||++++++|++++
T Consensus 381 ~e~i~~~~~~l~~~l 395 (396)
T PRK04073 381 KEELDWAFEKIKAVL 395 (396)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=182.28 Aligned_cols=331 Identities=13% Similarity=0.134 Sum_probs=211.5
Q ss_pred CCCCeEEecc----CCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINN----GSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~----~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.+..++.|.. ...|+.++.+.+++.+.+..... .... ...+...+++++++++++. +++++++||++|+
T Consensus 25 ~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~---~~~~~~~~l~~~la~~~g~---~~~~~~~sg~~a~ 97 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVH-VSNL---YYTEPQEELAEKLVEHSGA---DRVFFCNSGAEAN 97 (379)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccc-cccc---cCCHHHHHHHHHHHhhCCC---CEEEEeCCcHHHH
Confidence 3555666654 24566667799999887765321 1111 1356688999999999987 3999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEE----EeCCC-----CCCChHHHHHHHHHHHh
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVE----VQLPF-----PLASEEEIINEFKKGIE 182 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~----~~~~~-----~~~~~~~~~~~l~~~i~ 182 (452)
..++.++. .+....-.++++|+++++.|++........ +..... .++.. +.+ .++.+++.+
T Consensus 98 ~~a~~~~~-~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----d~~~l~~~~- 167 (379)
T TIGR00707 98 EAALKLAR-KYTGDKGKEKKKIIAFENSFHGRTMGALSA----TGQPKYQKGFEPLVPGFSYAPYN----DIESLKKAI- 167 (379)
T ss_pred HHHHHHHH-HHhhccCCCCCeEEEECCCcCCccHHHHHh----cCChhhhccCCCCCCCceeeCCC----CHHHHHHHh-
Confidence 99988652 110000013799999999987644333221 211110 11100 111 167888888
Q ss_pred ccccCCCceEEEEEeccCCCCccc-cc---HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVV-IP---VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHK 253 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~-~~---l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K 253 (452)
.+++++|++++.++++|.. .+ +++|.++|+++++ ++|+|++++ ++.. ..+.....+|+++ ++|
T Consensus 168 -----~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~-~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t--~sK 239 (379)
T TIGR00707 168 -----DDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDA-LLIFDEVQTGIGRTGKFFAYEHYGIEPDIIT--LAK 239 (379)
T ss_pred -----hhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCccchhhhHHhcCCCCCEEE--Ecc
Confidence 4578999998888888865 33 7899999999999 799999986 3321 1122233467664 579
Q ss_pred cCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 012991 254 WFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 254 ~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~ 333 (452)
++.++..+|+++.++++++. + .... .+ . ....+...+.+..++++.+.. ..+.+++++++++
T Consensus 240 ~~~~G~riG~~~~~~~~~~~-~-~~~~---~~------~--~~~~~~~~~~aa~aaL~~~~~-----~~~~~~~~~~~~~ 301 (379)
T TIGR00707 240 GLGGGVPIGATLAKEEVAEA-F-TPGD---HG------S--TFGGNPLACAAALAVLEVIEK-----ERLLENVKEKGDY 301 (379)
T ss_pred cccCCcccEEEEEcHHHHhh-h-cCCC---CC------C--CCCCCHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHH
Confidence 86644458999998877765 2 1110 00 0 012233445555556665542 2456778888888
Q ss_pred HHHHHHHHcCCCcC-CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 334 MARMLANAWGTSLG-SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 334 l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
+++.|.++ +.... .+....+.++++.++. +..++.+.|.++ ||.+.+. .
T Consensus 302 ~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~l~~~-Gv~v~~~--------------------~ 351 (379)
T TIGR00707 302 FKERLEEL-GKNYPNKEVRGKGLMLGIELEA--------PCKDIVKKALEK-GLLVNCA--------------------G 351 (379)
T ss_pred HHHHHHHH-HhhCCCCccccCceEEEEEecC--------cHHHHHHHHHHC-CcEEeeC--------------------C
Confidence 88888775 22211 1111236678887751 356888888764 9998631 1
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHH
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.+++|++++..+|.+++++++++|+++
T Consensus 352 ~~~lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 352 PKVLRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 368999998888999999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=181.71 Aligned_cols=337 Identities=15% Similarity=0.092 Sum_probs=206.1
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND 131 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~ 131 (452)
..+..+++.+.+..- .. .+..+..+++++.++++++. +++++|+|||+|+.+++.++ .+++||
T Consensus 10 ~~~e~~a~~~~~~~~-----~~--~~~g~~~~~~e~~la~~~g~---~~~v~~~sgt~aL~~~l~al-------~~~pGd 72 (376)
T TIGR02379 10 TGQELEYIAEAISEG-----KL--SGDGPFSRRCETWLENRTGT---KKALLTPSCTAALEMAALLL-------DIQPGD 72 (376)
T ss_pred CHHHHHHHHHHHHcC-----Cc--cCCcHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-------CCCCcC
Confidence 445667777655321 11 11234578899999999987 47999999999999998876 368999
Q ss_pred EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH
Q 012991 132 TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR 210 (452)
Q Consensus 132 ~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~ 210 (452)
+|++++++|.+...++. ..|++++.++++. +...+ ++++++.+ ++++++|+.+ +++|...|++
T Consensus 73 ~Viv~~~t~~~~~~~~~----~~G~~~v~vd~d~---~~~~~d~~~le~~i------~~~tk~Iip~---~~~G~~~d~~ 136 (376)
T TIGR02379 73 EVIMPSYTFVSTANAFV----LRGAKIVFVDIRP---DTMNIDETLIESAI------THRTKAIVPV---HYAGVACDMD 136 (376)
T ss_pred EEEECCCCcHHHHHHHH----HcCCEEEEEecCC---CcCCCCHHHHHHhc------CcCceEEEEe---CCCCCccCHH
Confidence 99999999999877764 3599999996531 11234 78899988 5789998754 5689999999
Q ss_pred HHHHHHHHcCCCEEEEecccccCCccccccccC--ccEEEEcCc--ccCc-CCCCcEEEEEe-cCccccCCCCCceeccC
Q 012991 211 KLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG--ADFYVSNLH--KWFF-CPPSVAFLYCR-KSILSSDMHHPVVSHEF 284 (452)
Q Consensus 211 ~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~l~-g~~G~G~l~~~-~~~~~~~l~~~~~~~~~ 284 (452)
+|.++|++||+ ++|+|++|+.|.. .+-...+ .|+.++|+| |.+. |+.| |+++.+ +++.++ + ..+.. +
T Consensus 137 ~I~~la~~~~i-~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~g-G~v~~~~~~~~~~-~-~~~~~--~ 209 (376)
T TIGR02379 137 TIMALANKHQL-FVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEG-GALLINDQAFIER-A-EIIRE--K 209 (376)
T ss_pred HHHHHHHHCCC-EEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCc-eEEEECCHHHHHH-H-HHHHH--h
Confidence 99999999999 7999999998864 2222222 377777765 4443 3355 777776 445544 1 11111 1
Q ss_pred CCCc---------ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc--C-CCcCC-Ccc
Q 012991 285 GNGL---------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW--G-TSLGS-PPE 351 (452)
Q Consensus 285 ~~~~---------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~-~~~ 351 (452)
|... .......|...-..-+....++..+. -++.+.++.++..++..+.|..++ + ..+.. ++.
T Consensus 210 g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~----~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~ 285 (376)
T TIGR02379 210 GTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLE----QADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNG 285 (376)
T ss_pred CCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCC
Confidence 1100 00000012111111111222223333 245556666677777777776543 1 22221 111
Q ss_pred --cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCC---CCC----CCccceEEecccc
Q 012991 352 --ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGAR---DKD----GIITGYARISHQV 422 (452)
Q Consensus 352 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~---~~~----~~~~~~iRis~~~ 422 (452)
....++++.++ ...+.+++.+.|.++ ||..+.++.+.+.-. +.+... ... ......+.+.++.
T Consensus 286 ~~~~~~~~~i~~~------~~~~r~~l~~~L~~~-gI~~~~~~~p~~~~~-~~~~~~~~~~~~p~~~~~~~~~l~LP~~~ 357 (376)
T TIGR02379 286 CQHNAHMFYIKLK------DEDDRNELIKYLKEQ-EIMAVFHYVPLHSSP-AGRYFGRFHGEDIYTTKESERLVRLPLYY 357 (376)
T ss_pred CeeeeEEEEEEEC------CcCCHHHHHHHHHHC-CCCccccCcCCCcch-hHHhhCCCCCCChHHHHHHhceEEccCCC
Confidence 11234455554 233678899999764 999865554322100 000000 000 0124468888888
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 012991 423 YNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~ 440 (452)
..|++|+++++++|++++
T Consensus 358 ~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 358 GLSKEDQARVIQTICDYL 375 (376)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 889999999999999864
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=167.15 Aligned_cols=371 Identities=17% Similarity=0.191 Sum_probs=270.2
Q ss_pred HHHHHhhhcc---------------CCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch-hh-h-hhhhHHHHHHHH
Q 012991 26 EAEIRDEFSH---------------HQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD-FY-F-NSLRKGILESRA 87 (452)
Q Consensus 26 ~~~ir~~~~~---------------~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~ 87 (452)
..++|++|.+ ..+++|||..++.|.+|+.+.+.+.+-++.|..-... ++ + ..+-..-+.+-.
T Consensus 39 l~~~Rd~F~iPk~~~lp~~d~sLv~~d~~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~ 118 (465)
T KOG3846|consen 39 LESLRDEFNIPKFKSLPDADPSLVSDDKPVIYLCGNSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILP 118 (465)
T ss_pred HHHHHHHhcCCccccCCCCCccccCCCCCeEEEeccccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhh
Confidence 4678888742 2567999999999999999999999988877332111 11 1 223334566778
Q ss_pred HHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCC---CCEEEEeCCcchhHHHHHHHHHHhcCcEEE--EEe
Q 012991 88 AVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR---NDTVLMLHCAFQAVKKSIQAYVTRAGGSVV--EVQ 162 (452)
Q Consensus 88 ~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~---g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~--~~~ 162 (452)
.++.+.|+. ..+|.+.++-|.-++.++..+ .+| +-+|+...-+|+|-+.++...++..|..+. .+.
T Consensus 119 l~~~iVGA~-e~EvavmNsLTvNlh~Ll~sF--------yKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~ 189 (465)
T KOG3846|consen 119 LLAPIVGAQ-ENEVAVMNSLTVNLHSLLISF--------YKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQ 189 (465)
T ss_pred hhhhhccCC-chhhhhHhhhhhHHHHHHHHh--------cCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEE
Confidence 899999997 678999999999888888876 344 348999999999999999888888887643 222
Q ss_pred CCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccc
Q 012991 163 LPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE 241 (452)
Q Consensus 163 ~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~ 241 (452)
+. |...+..+ .+++...|++. +..+++|+++..+.-||..+++.+|...-+..|+ ++=.|-||++|.+++.+..
T Consensus 190 ie-PREGEetlRteDILd~IEkn---gDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc-~VGfDLAHAvgNVpL~LHd 264 (465)
T KOG3846|consen 190 IE-PREGEETLRTEDILDTIEKN---GDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGC-LVGFDLAHAVGNVPLQLHD 264 (465)
T ss_pred ec-ccccccchhHHHHHHHHHhc---CCeEEEEEeecceeecccccchhhhhhcccCCCc-EechhhhhhhcCCceEEee
Confidence 22 33333444 67777777653 5678999999999999999999999977777899 8999999999999999999
Q ss_pred cCccEEEEcCcccCcCCCC-cEEEEEecCccccCCCCCceeccCCCCccc--------------ccccccccCccccccH
Q 012991 242 IGADFYVSNLHKWFFCPPS-VAFLYCRKSILSSDMHHPVVSHEFGNGLPI--------------ESAWIGTRDYSAQLVI 306 (452)
Q Consensus 242 ~~~d~~~~s~~K~l~g~~G-~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 306 (452)
|++||.+...+|+++++.| +|.+++....... . .|.+..|+|..... --+..+.|++....++
T Consensus 265 WgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~-~-~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al 342 (465)
T KOG3846|consen 265 WGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKE-S-LPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVAL 342 (465)
T ss_pred cCCceEEEeeecccccCCCccceeeeehhhhcc-h-hhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHH
Confidence 9999999999999876544 7777776555543 2 33333334432210 0123456778888888
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-----------cCCCc--ccccceEEEEcCCccccCChhhH
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-----------LGSPP--EICAAMVMVGLPSRLRVMGEDDA 373 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 373 (452)
...++.+... .+++++.+..-+..|+.-.+....|.. +..|. +.++..+.+.+. ...
T Consensus 343 ~~SLe~F~q~--~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fs--------sp~ 412 (465)
T KOG3846|consen 343 RSSLELFAQF--NINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFS--------SPT 412 (465)
T ss_pred HhhHHHHHHh--hHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeC--------CCc
Confidence 8899988876 689999999999999888777665533 12221 122333333221 123
Q ss_pred HHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHhcc
Q 012991 374 LRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 374 ~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
..+...|.+ +|+.+. -..++.||+.+ +.|||.-||-+++.+|.+++...
T Consensus 413 ~~vfqeL~k-rGv~~D--------------------kR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~ 462 (465)
T KOG3846|consen 413 PKVFQELHK-RGVIGD--------------------KRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL 462 (465)
T ss_pred hHHHHHHHH-cCeecc--------------------ccCCCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence 678888865 498763 25678999997 68899999999999999998643
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=183.55 Aligned_cols=329 Identities=18% Similarity=0.158 Sum_probs=209.9
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
|.......++++.+++++|.+ ++++|+|||+|+.+++.++ +++||+| ++++.|.+....+ ...|
T Consensus 49 Y~~~~g~~~Leeaia~~~g~~---~vv~t~~Gt~Al~la~~al--------~~pGD~V-~~~~~f~~~~~~i----~~~G 112 (431)
T cd00617 49 YAGSKSFYDLEDAVQDLFGFK---HIIPTHQGRGAENILFSIL--------LKPGRTV-PSNMHFDTTRGHI----EANG 112 (431)
T ss_pred cCCCCCHHHHHHHHHHHHCCC---eEEEcCCHHHHHHHHHHHh--------CCCCCEE-ccCCcccchHHHH----HhCC
Confidence 344556789999999999984 8999999999999999876 5899987 5777777655444 4469
Q ss_pred cEEEEEeCCCCCC------ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-cccccH---HHHHHHHHHcCCCEE
Q 012991 156 GSVVEVQLPFPLA------SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIPV---RKLVKICRDEGVDQV 224 (452)
Q Consensus 156 ~~v~~~~~~~~~~------~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~l---~~i~~l~~~~~~~~~ 224 (452)
.+++.++++...+ ..+.+ +++|++.|+.. ...++++|+++.++|++ |..+++ ++|.++|++||+ ++
T Consensus 113 a~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~--~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi-~l 189 (431)
T cd00617 113 AVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV--GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGI-PV 189 (431)
T ss_pred CEeEEEecccccccccccCCCCCcCHHHHHHHhCcc--cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCC-EE
Confidence 9999997742211 12336 99999999531 01358999999999998 899865 577999999999 79
Q ss_pred EEecccccC-----------Cccccccc------cCccEEEEcCcccCcCCCCcEEEEEecC-ccccCCCCCceeccCCC
Q 012991 225 FVDAAHAMG-----------SIKIDVKE------IGADFYVSNLHKWFFCPPSVAFLYCRKS-ILSSDMHHPVVSHEFGN 286 (452)
Q Consensus 225 ivD~a~~~g-----------~~~~~~~~------~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~~~~l~~~~~~~~~~~ 286 (452)
|.|+++..+ .....+.. ...|.+++|++|...++.| |+++.+++ ++.+ + ..+.....+
T Consensus 190 i~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~-~-~~~~~~~~~- 265 (431)
T cd00617 190 VLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEE-A-RQRVVLYEG- 265 (431)
T ss_pred EEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHH-H-HHhccccCC-
Confidence 999997643 11111111 1478999999997666765 78888874 6554 1 111000000
Q ss_pred CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc
Q 012991 287 GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR 366 (452)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (452)
....|..+.....++..+++... ..+.+.+ ..+.++++.+.|.+. |+.+..|.+ ++++++.++.-..
T Consensus 266 -----~~~~gG~~~r~~~A~A~gL~e~~----~~~~l~~-~~~~r~~l~~~L~~~-G~~v~~P~G--gh~v~~d~~~~~~ 332 (431)
T cd00617 266 -----FVTYGGMAGRDMEALAQGLREAV----EEDYLRH-RVEQVRYLGDRLDEA-GVPIVEPAG--GHAVFIDAREFLP 332 (431)
T ss_pred -----ccccccccHHHHHHHHHHHHhcc----cHHHHHH-HHHHHHHHHHHHHHC-CCCccCCCc--ceEEEEEhHHhcC
Confidence 00012222222222222332211 1233333 344668899999988 888887765 6788877653111
Q ss_pred c--CChhhHHHHHHHHhhhcceEee-ecccCCCCCCCCCCCCCCCCCCccceEEecccc-cCCHHHHHHHHHHHHHHHhc
Q 012991 367 V--MGEDDALRLRGHLRVRFGVEVP-IHYQAPKDDGQPQAGARDKDGIITGYARISHQV-YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 367 ~--~~~~~~~~l~~~L~~~~gI~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~~di~~l~~~l~~~~~~ 442 (452)
. .++.++..++.+|.++.||.+. .+....+.. ..-... .......+|+++.- .-|.++++.++++|..+.++
T Consensus 333 ~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~--~~~~~~--~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 333 HIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRD--PNTGEN--KYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred CCCcccCcHHHHHHHHHHHcCeeEEeecceecccC--CCCCcc--cCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 0 0123578889888888899862 222110000 000000 01124689999873 34899999999999999976
Q ss_pred cc
Q 012991 443 GQ 444 (452)
Q Consensus 443 ~~ 444 (452)
..
T Consensus 409 ~~ 410 (431)
T cd00617 409 RE 410 (431)
T ss_pred Hh
Confidence 43
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=183.27 Aligned_cols=327 Identities=17% Similarity=0.155 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC-----CC--CCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 55 VLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN-----AD--DVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 55 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~--~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
+++++.+...... ....+.|....+...+|+.+++++. .. +.++|++|+|+++++.+++.++ .
T Consensus 21 ~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l--------~ 90 (388)
T PRK08637 21 YLSSLQDLLNDLT--PDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLF--------V 90 (388)
T ss_pred hHHHHHHHHHhhc--cccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHh--------c
Confidence 5555555544321 1222345556678888888887652 21 1257899999999999999976 5
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
++||+|++++|.|+.....+. ...|.+++.+++. .++ +.+ ++++++.++.. ..+...++++++|+||||..
T Consensus 91 ~~gd~Vlv~~P~y~~~~~~~~---~~~g~~vv~v~~~--~~~-~~~d~~~l~~~~~~~--~~~~~~~~~~~~P~NPTG~~ 162 (388)
T PRK08637 91 DQGDTVLLPDHNWGNYKLTFN---TRRGAEIVTYPIF--DED-GGFDTDALKEALQAA--YNKGKVIVILNFPNNPTGYT 162 (388)
T ss_pred CCCCEEEEcCCCCccHHHHHH---HhcCCEEEEeccc--CCC-CcCCHHHHHHHHHhh--ccCCCEEEEEeCCCCCCCCC
Confidence 899999999999988755442 2358999998651 122 234 88898887521 02455678899999999999
Q ss_pred ccHH---HHHHHHHH-----cCCCEEEEecccccCCc----ccc----ccccCcc---EEEEcCcccCcCCCC--cEEEE
Q 012991 207 IPVR---KLVKICRD-----EGVDQVFVDAAHAMGSI----KID----VKEIGAD---FYVSNLHKWFFCPPS--VAFLY 265 (452)
Q Consensus 207 ~~l~---~i~~l~~~-----~~~~~~ivD~a~~~g~~----~~~----~~~~~~d---~~~~s~~K~l~g~~G--~G~l~ 265 (452)
++.+ +|+++|++ |++ ++|+|+++..-.. ..+ +...... +.+.|++|. ++.+| +|+++
T Consensus 163 ~s~~~~~~l~~~~~~~~~~~~~~-~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~-~~~pGlRlG~~~ 240 (388)
T PRK08637 163 PTEKEATAIVEAIKELADAGTKV-VAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKE-EFVWGFRVGFIT 240 (388)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcE-EEEecccchhcccCCccchhhHHHhhcccccceEEEecccccc-CCCcccceEEEE
Confidence 8854 56676665 899 7999998753211 111 1111112 233499995 66666 78887
Q ss_pred Eec------CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 266 CRK------SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 266 ~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
+.. ++.+. +....... ... .....+...+.++..+++. ..+..-.+..+..+++..+.+.+.|.
T Consensus 241 ~~~~~~~~~~l~~~-~~~~~~~~-------~~~-~~~~~s~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~~l~ 310 (388)
T PRK08637 241 FGTKAGSSQTVKEA-LEKKVKGL-------IRS-NISNGPHPSQSAVLRALNS-PEFDKEKQEKFQILKERYEKTKEVLY 310 (388)
T ss_pred EccccCCcHHHHHH-HHHHHHHH-------hhc-ccCCCCcHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 642 33332 10000000 000 0012223333333333321 00000123334445555566666675
Q ss_pred HHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 340 NAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 340 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
+.. ++.+..+++ +.++|+.++ +.+..++.+.|.+++||.+.. ...+++
T Consensus 311 ~~~~~~~~~~~~~~~--g~~~~~~l~-------~~~~~~l~~~l~~~~gv~~~~--------------------~~~~~i 361 (388)
T PRK08637 311 DGKYDDAWQAYPFNS--GYFMCLKLK-------GVDAEELRVHLLEKYGIGTIA--------------------LNETDL 361 (388)
T ss_pred hhCCCCCcccccccc--eEEEEecCC-------hHHHHHHHHHHhhhcceEEEe--------------------ccCCce
Confidence 542 345444443 678888875 346678988886556998742 113689
Q ss_pred EecccccCCHHHHHHHHHHHHHHHh
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~ 441 (452)
||+++. .+.++++..++.|+++++
T Consensus 362 Ri~~~~-~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 362 RIAFSC-VEEEDIPELFDSIYKAIK 385 (388)
T ss_pred EEEeec-CCHHHHHHHHHHHHHHHH
Confidence 999986 468889999999988875
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-20 Score=183.55 Aligned_cols=340 Identities=13% Similarity=0.084 Sum_probs=203.4
Q ss_pred CCCeEEeccCC-CCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC-----CCcEE--EecCh
Q 012991 37 QHGVARINNGS-FGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD-----VGEIS--LVDNA 107 (452)
Q Consensus 37 ~~~~~~l~~~~-~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~i~--~t~g~ 107 (452)
+...+.|+.+. +.+ .++.+.+++.+...... .+.....|....+..++|+++++++.... ++.|. .+.+|
T Consensus 47 ~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~-~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g 125 (423)
T PLN02397 47 SPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLL-AGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSG 125 (423)
T ss_pred CcceEecccceeeCCCCCcccchHHHHHHHHhh-ccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccc
Confidence 34567777764 233 33335556655543322 22222346677788999999999774221 12332 13444
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
+.+..+++..+. .+.+||+|++++|.|+.+...+ +..|.+++.+++.. .+...+ ++.+++.+++.
T Consensus 126 ~Ga~~l~~~~~~------~~~pGd~Vlv~~P~y~~y~~~~----~~~g~~~~~v~l~~--~~~~~~d~~~l~~~l~~~-- 191 (423)
T PLN02397 126 TGSLRLGAEFLA------RFYPGSTIYIPNPTWGNHHNIF----RDAGVPVRTYRYYD--PKTRGLDFDGLLEDLKAA-- 191 (423)
T ss_pred hHHHHHHHHHHH------HhCCCCEEEEeCCCchhHHHHH----HHcCCeEEEeeccc--CcCCccCHHHHHHHHHhC--
Confidence 434332222221 2469999999999999875555 44699999986521 111233 77787777532
Q ss_pred CCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc--------cc-cccccC-ccEEEEcCcc
Q 012991 187 DGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI--------KI-DVKEIG-ADFYVSNLHK 253 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~--------~~-~~~~~~-~d~~~~s~~K 253 (452)
.++++++++++|+||||.+++. ++|+++|++|++ ++|+|+++..-.. +. .+...+ ..+++.|++|
T Consensus 192 -~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~-~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK 269 (423)
T PLN02397 192 -PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNH-LPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAK 269 (423)
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc-EEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcc
Confidence 3568899999999999999985 467888999999 7999999753221 11 111111 2367779999
Q ss_pred cCcCCCC--cEEEE--E-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH---HHHhhcCHHHHHH
Q 012991 254 WFFCPPS--VAFLY--C-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF---VSRFEGGIDGIMQ 325 (452)
Q Consensus 254 ~l~g~~G--~G~l~--~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~g~~~~~~ 325 (452)
. ++++| +|+++ . +++.+.. +...... .........+...+.++..+++. ...+...++.+++
T Consensus 270 ~-~~~~G~RvG~~v~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~ 339 (423)
T PLN02397 270 N-MGLYGERVGALSVVCKSADVAVR-VKSQLKL--------IARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMAD 339 (423)
T ss_pred c-CCCccccceEEEEEeCCHHHHHH-HHHHHHH--------HHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6 77777 78875 3 2332221 0000000 00000011222222222222321 1110012466778
Q ss_pred HHHHHHHHHHHHHHHHcC----CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 326 RNHEQALKMARMLANAWG----TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
+++++++.+.+.|.++ + +.+..|++ ++++|..++ .++++.|.+++||.+.
T Consensus 340 ~~~~rr~~l~~~L~~~-~~~~~~~~~~p~g--g~fl~~~l~-----------~~~~~~Ll~~~~V~v~------------ 393 (423)
T PLN02397 340 RIISMRQKLYDALEAR-GSPGDWSHITKQI--GMFSFTGLN-----------KEQVDRMTKEYHIYMT------------ 393 (423)
T ss_pred HHHHHHHHHHHHHHhc-CCCCCCCcccCCc--eEEEecCCC-----------HHHHHHHHHhCCEEEC------------
Confidence 8899999999999987 5 55555554 677776542 3478888888899983
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+ |+++.. .+.++++.++++|+++++.
T Consensus 394 ----------~~~--Ri~~~~-~~~~~i~~~~~~i~~~~~~ 421 (423)
T PLN02397 394 ----------RDG--RISMAG-LSSKNVPYLADAIHAVVTN 421 (423)
T ss_pred ----------CCC--eEEEee-CCHHHHHHHHHHHHHHHhc
Confidence 113 999964 3788999999999999863
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-20 Score=160.02 Aligned_cols=356 Identities=20% Similarity=0.196 Sum_probs=231.2
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHH-----HhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLK-----FLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~ 109 (452)
..++.|++|.-+.+ ..+++.++++-++-+. ++.. .....-..+-+.+..+.+++++|.+ .+-+|.|+-+
T Consensus 13 ~~r~~iNv~PiQrGGiLt~eArkal~E~gDGYSvCD~C~~--Grldei~kPpI~~F~~dlaeFlg~D---~~R~t~GARe 87 (382)
T COG1103 13 LTRGFINVNPIQRGGILTEEARKALLEWGDGYSVCDFCLE--GRLDEITKPPIKDFLEDLAEFLGMD---EVRVTAGARE 87 (382)
T ss_pred hhcCccccChhhccCcCCHHHHHHHHHhcCCcchhhhhcc--CccccccCCcHHHHHHHHHHHhCCc---eeeecccchh
Confidence 44577888876655 7788888888776432 1111 0001111223566777799999994 8899999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
+=..+..++ .++||-|+++..+|.+.+.+ |++.|.++..+|-. . ..+..+ ++...+.|++....+
T Consensus 88 ~KfavMhal--------~~~gd~vV~D~~aHYttyvA----AEragl~v~eVp~t-g-~Pey~i~~e~y~~viee~~~~~ 153 (382)
T COG1103 88 AKFAVMHAL--------CKEGDWVVVDSLAHYTTYVA----AERAGLNVAEVPNT-G-YPEYKITPEGYAEVIEEVKDEG 153 (382)
T ss_pred hHHHHHHHh--------ccCCCEEEEcCcchHHHHHH----HHhcCCeEEecCCC-C-CCceEecHHHHHHHHHHHHhcc
Confidence 999999987 48999999999999887655 57789999999631 1 112223 444444444332223
Q ss_pred -CceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 189 -KMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 189 -~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
..+.+.+++|+....|.+.|.+.++++|+++|+ ++++.+|+++|-++++....++||++.|+||++.+...+|++.++
T Consensus 154 g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gv-PlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~ 232 (382)
T COG1103 154 GDPPALALLTHVDGEYGNLADAKKVAKICREYGV-PLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMS 232 (382)
T ss_pred CCCceEEEEeccCCCcCCchhhHHHHHHHHHcCC-ceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeeh
Confidence 568999999999999999999999999999999 699999999999999999999999999999997666558999988
Q ss_pred cCccccCCCCCceeccCCCCcccc--cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIE--SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
.+..+. . ... .|...+.+ .+...|.-.+++..+-+.+.+..+. .++.-+ -.+.++++.+.|..+.|++
T Consensus 233 eE~ae~-V-~r~----Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eR---VkrWde-Ev~kaR~fv~elEkigg~~ 302 (382)
T COG1103 233 EEWAEI-V-LRR----SGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVER---VKRWDE-EVEKARWFVAELEKIGGVK 302 (382)
T ss_pred hHHHHH-H-Hhh----cccccccceeeeecccccCchHHHHHhcCHHHHHH---HHHHHH-HHHHHHHHHHHHHHhhhHH
Confidence 776654 1 000 01101111 0111222223333333333333321 222222 2467889999999997775
Q ss_pred cCCCcccccceEEEEcCCcc--ccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 346 LGSPPEICAAMVMVGLPSRL--RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
..+.....--.+.|..|--. ..+......-+++.|.++ ||.-. . .....++.+|+..
T Consensus 303 qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~R-gI~GI---~----------------~G~Tk~~K~svyG- 361 (382)
T COG1103 303 QLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKR-GIHGI---Q----------------PGQTKYFKLSVYG- 361 (382)
T ss_pred HhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhc-Ccccc---c----------------cCceeEEEEEeec-
Confidence 44332111235556555100 000011122366677554 66521 1 1234589999865
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 012991 424 NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~ 442 (452)
.+.|+++.++++.+++++.
T Consensus 362 l~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 362 LSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3799999999999999875
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=169.94 Aligned_cols=332 Identities=17% Similarity=0.196 Sum_probs=213.5
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHH
Q 012991 70 PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQA 149 (452)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~ 149 (452)
++..|++-+.+....++++++.+-|. -..+-++||.+|+..++.++ ..+||+|+.++.-|.+.+..+..
T Consensus 52 ~G~iYsRi~NPT~~vlE~RiAaLEGG---~aa~a~aSG~AA~~~ai~~l--------a~aGD~iVss~~LYGGT~~lf~~ 120 (426)
T COG2873 52 PGNIYTRIMNPTTDVLEERIAALEGG---VAALAVASGQAAITYAILNL--------AGAGDNIVSSSKLYGGTYNLFSH 120 (426)
T ss_pred CCceeeeccCchHHHHHHHHHHhhcc---hhhhhhccchHHHHHHHHHh--------ccCCCeeEeeccccCchHHHHHH
Confidence 45556666677788999999999776 35577889999999999988 58999999999999999999988
Q ss_pred HHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecc
Q 012991 150 YVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAA 229 (452)
Q Consensus 150 ~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a 229 (452)
...+.|+++++++ .++ ++.++++| .++||+|+++...||.+.+.|++.|+++||++|+ +++||.+
T Consensus 121 tl~~~Gi~v~fvd----~~d----~~~~~~aI------~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gv-pliVDNT 185 (426)
T COG2873 121 TLKRLGIEVRFVD----PDD----PENFEAAI------DENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGV-PLIVDNT 185 (426)
T ss_pred HHHhcCcEEEEeC----CCC----HHHHHHHh------CcccceEEEEeccCCCccccCHHHHHHHHHHcCC-cEEEecC
Confidence 7789999999994 233 79999999 7999999999999999999999999999999999 7999998
Q ss_pred cccCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCC--CCCcee-cc--C-CCCcc---------ccc
Q 012991 230 HAMGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDM--HHPVVS-HE--F-GNGLP---------IES 292 (452)
Q Consensus 230 ~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l--~~~~~~-~~--~-~~~~~---------~~~ 292 (452)
.+.+.+ +..-+.|+|+|+.|.+||++ +.| +|-+++.....+... +.|.+. .+ | |.... ...
T Consensus 186 ~atpyl-~rP~~hGADIVvHS~TK~ig-GhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~ 263 (426)
T COG2873 186 FATPYL-CRPIEHGADIVVHSATKYIG-GHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKA 263 (426)
T ss_pred CCccee-cchhhcCCCEEEEeeccccc-CCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHH
Confidence 777643 23334589999999999854 444 677777655554300 111110 00 0 00000 000
Q ss_pred ccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc-CCC---------------cccccce
Q 012991 293 AWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL-GSP---------------PEICAAM 356 (452)
Q Consensus 293 ~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~---------------~~~~~~~ 356 (452)
...+..+..+.++-..+...+.-+ +.+.-..+|..+++..+.+.|.+.|.+.. ..| +...+.+
T Consensus 264 r~~~lRDlGa~lsPfnAfl~lqGl-ETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~v 342 (426)
T COG2873 264 RVQLLRDLGATLSPFNAFLLLQGL-ETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAV 342 (426)
T ss_pred HHHHHHhcccccCcHHHHHHHhch-hhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceE
Confidence 001111111112222222222200 11223355667888889999999876642 222 1235789
Q ss_pred EEEEcCCccccCCh-hhHHHHHHHHhhh---cceEe-ee-cccCCCCCCCCCCCC--CCCCCCccceEEecccccCCHHH
Q 012991 357 VMVGLPSRLRVMGE-DDALRLRGHLRVR---FGVEV-PI-HYQAPKDDGQPQAGA--RDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~l~~~L~~~---~gI~v-~~-~~~~~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~d 428 (452)
+.|.+. ++ ...+++.+.|.-- .+|.= ++ ..++ .+.-+.+... +.+-+..++.||+|++ .||
T Consensus 343 ltF~~k------gg~ea~~~fi~~l~L~s~laNvGD~rsLvIHP-AsTTH~ql~~ee~~~aGv~~~~IRlSVG----IEd 411 (426)
T COG2873 343 LTFGVK------GGYEAGKKFIDALKLFSHLANIGDARSLVIHP-ASTTHRQLSEEEQAAAGVTPDLIRLSVG----IED 411 (426)
T ss_pred EEEEec------ChHHHHHHHHHHHHHHHhhccccccceeEecC-cccchhcCCHHHHHhcCCCCCcEEEEec----cCC
Confidence 999886 23 2345566655311 12210 11 1111 1111111111 1123677899999997 567
Q ss_pred HHHHHHHHHHHHh
Q 012991 429 YEKFRDAVILLVE 441 (452)
Q Consensus 429 i~~l~~~l~~~~~ 441 (452)
++.++..|+..++
T Consensus 412 ~~DiiaDl~qAl~ 424 (426)
T COG2873 412 IDDIIADLEQALE 424 (426)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777654
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=180.84 Aligned_cols=339 Identities=12% Similarity=0.141 Sum_probs=213.9
Q ss_pred CCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
+..++.+..+ ..|..++.|.+++.+.+.... ..+..+ ..+..+++++.++++++. +.++|++|||+|+.
T Consensus 30 g~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~~~~~---~~~~~~~SGs~A~e 102 (400)
T PTZ00125 30 GKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLT-LTSRAF---YNDVLGLAEKYITDLFGY---DKVLPMNSGAEAGE 102 (400)
T ss_pred CCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcc-cccccc---cCHHHHHHHHHHHhCCCC---CEEEEeCCcHHHHH
Confidence 4445554433 234567889999998876431 111111 245678899999998866 48899999999999
Q ss_pred HHHHHhhcccc--cCCC-CCCCEEEEeCCcchhHHHHHHHHHHhcCc---------EEEEEeCCCCCCChHHHHHHHHHH
Q 012991 113 IVLQQIGRGFT--EGRF-HRNDTVLMLHCAFQAVKKSIQAYVTRAGG---------SVVEVQLPFPLASEEEIINEFKKG 180 (452)
Q Consensus 113 ~~~~~l~~~~~--~~~~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~---------~v~~~~~~~~~~~~~~~~~~l~~~ 180 (452)
.++..+. .+. .... ..+++|++.+..|++.......+...... .+..+ +..+ ++++++.
T Consensus 103 ~al~~~~-~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~le~~ 173 (400)
T PTZ00125 103 TALKFAR-KWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELV----DYND----VEALEKL 173 (400)
T ss_pred HHHHHHH-HHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEe----CCCC----HHHHHHH
Confidence 9998653 111 0001 13578888888777754333221110000 01111 1111 6888888
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNL 251 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~ 251 (452)
++ .+++++|+++.++|++|.+.| +++|.++|++||+ ++|+|++++ +|.. ..+.....+|++++|
T Consensus 174 l~-----~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~s- 246 (400)
T PTZ00125 174 LQ-----DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNV-LLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLG- 246 (400)
T ss_pred hC-----CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCccchhhHHHhcCCCCCEEEEc-
Confidence 84 357999999999999999998 9999999999999 899999985 4321 122333457888765
Q ss_pred cccCcCCC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 252 HKWFFCPP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 252 ~K~l~g~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
|++.++. ++|++++++++.+. +. ... .+ ..+ + .+.....+..++++.+.+. + +.++.+++
T Consensus 247 -K~l~~g~~~ig~v~~~~~~~~~-~~-~~~---~~------~t~-~-~~~~~~~aa~~~l~~i~~~--~---~~~~~~~~ 307 (400)
T PTZ00125 247 -KALSGGLYPISAVLANDDVMLV-IK-PGE---HG------STY-G-GNPLACAVAVEALEVLKEE--K---LAENAQRL 307 (400)
T ss_pred -ccccCCCcCcEEEEEcHHHHhh-cc-CCC---CC------CCC-C-cCHHHHHHHHHHHHHHHhc--C---HHHHHHHH
Confidence 9877654 68999999887775 21 110 00 011 1 1222334444556666531 3 45666777
Q ss_pred HHHHHHHHHHHcCC-CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGT-SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 331 ~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
.+++++.|.++.+. .........+.++++.++.. +..+..++.+.|.++ ||.+.+.
T Consensus 308 ~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~----~~~~~~~~~~~l~~~-Gv~v~~~------------------ 364 (400)
T PTZ00125 308 GEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHS----DGVNAWDLCLKLKEN-GLLAKPT------------------ 364 (400)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccEEEEEEEccC----cchHHHHHHHHHHHC-CeEEeec------------------
Confidence 88888888765221 11111112356667666421 134567888888764 9998421
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+++|++++...++++|++++++|++++..
T Consensus 365 --~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~ 395 (400)
T PTZ00125 365 --HDNIIRFAPPLVITKEQLDQALEIIKKVLKS 395 (400)
T ss_pred --CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 2368999998888999999999999998865
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-20 Score=181.44 Aligned_cols=316 Identities=16% Similarity=0.146 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 80 KGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
+..+++++.+++++|. +++++++|||+|+.+++.++ .+++||+|+++.++|.++..++. ..|++++
T Consensus 31 ~~~~~~e~~la~~~g~---~~~v~~~sgt~al~~~l~~~-------~~~~Gd~Viv~~~t~~~~~~~~~----~~G~~~v 96 (375)
T PRK11706 31 GFTRRCQQWLEQRFGS---AKVLLTPSCTAALEMAALLL-------DIQPGDEVIMPSYTFVSTANAFV----LRGAKIV 96 (375)
T ss_pred HHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh-------CCCCCCEEEECCCCcHHHHHHHH----HcCCEEE
Confidence 4568888999999988 48999999999999887765 35899999999999999876654 4599999
Q ss_pred EEeCCCCCCCh-HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc
Q 012991 160 EVQLPFPLASE-EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI 237 (452)
Q Consensus 160 ~~~~~~~~~~~-~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~ 237 (452)
.+++ +.+ ..+ ++++++.+ ++++++|+++| ++|...++++|.++|+++|+ ++|+|++|+.|.. .
T Consensus 97 ~~d~----d~~~~~~d~~~le~~i------~~~tk~i~~~~---~~G~~~~~~~i~~la~~~~i-~vIeD~a~a~g~~-~ 161 (375)
T PRK11706 97 FVDI----RPDTMNIDETLIEAAI------TPKTRAIVPVH---YAGVACEMDTIMALAKKHNL-FVVEDAAQGVMST-Y 161 (375)
T ss_pred EEec----CCCcCCcCHHHHHHhc------CCCCeEEEEeC---CCCCccCHHHHHHHHHHcCC-EEEEECccccccc-c
Confidence 9965 222 234 89999998 56889998875 58999999999999999999 7999999998873 1
Q ss_pred ccccc--CccEEEEcCc--ccCcCCCCcEEEEEe-cCccccCCCCCceeccCCCC-------cc--cccccccccCcccc
Q 012991 238 DVKEI--GADFYVSNLH--KWFFCPPSVAFLYCR-KSILSSDMHHPVVSHEFGNG-------LP--IESAWIGTRDYSAQ 303 (452)
Q Consensus 238 ~~~~~--~~d~~~~s~~--K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~ 303 (452)
+-... ..|+-++|+| |.+..+.| |+++++ +++..+ + ..... .|.. .. ......|+.....-
T Consensus 162 ~~~~~g~~~~~~~~Sf~~~K~l~~g~g-G~~~~~~~~~~~~-~-~~~~~--~g~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (375)
T PRK11706 162 KGRALGTIGHIGCFSFHETKNYTAGEG-GALLINDPALIER-A-EIIRE--KGTNRSQFFRGQVDKYTWVDIGSSYLPSE 236 (375)
T ss_pred CCeeeecCcCEEEEeCCCCccccccCC-eEEEECCHHHHHH-H-HHHHH--cCCCcchhhccCCCcceeeecccccCcCH
Confidence 11111 2477788877 97654444 555554 444432 1 11100 1100 00 00001122222111
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc--C-CCcCC-Ccc--cccceEEEEcCCccccCChhhHHHHH
Q 012991 304 LVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW--G-TSLGS-PPE--ICAAMVMVGLPSRLRVMGEDDALRLR 377 (452)
Q Consensus 304 ~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (452)
+....++..+. .++.+.++.+++.+++.+.|..++ + +.+.. +.. ....++++.++ ++.+..++.
T Consensus 237 ~~aa~~~~ql~----~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~r~~l~ 306 (375)
T PRK11706 237 LQAAYLWAQLE----AADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLR------DLEDRSALI 306 (375)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEEC------CcCCHHHHH
Confidence 11222223333 356666777788888888887664 1 33221 211 12334555554 234678899
Q ss_pred HHHhhhcceEeeecccCCCCCCCCCCC-C-CCCC----CCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 378 GHLRVRFGVEVPIHYQAPKDDGQPQAG-A-RDKD----GIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 378 ~~L~~~~gI~v~~~~~~~~~~~~~~~~-~-~~~~----~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.|.++ ||.++..+.+.+.-...... . .... ......+-+.++...+.+|++.+++.|++++
T Consensus 307 ~~L~~~-gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 307 NFLKEA-GIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred HHHHHC-CCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 999775 99986554432210000000 0 0000 1224457777777789999999999999865
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=162.76 Aligned_cols=332 Identities=14% Similarity=0.156 Sum_probs=227.4
Q ss_pred CCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhcCCchhhh-hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 38 HGVARINNGSF-G-SCPKSVLADQQKWQLKFLQQPDDFYF-NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 38 ~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
.++++|..+.+ + ...+++.++-+..+..+...+++... -+.+..-..++++||++.+-+ |.+ +.+++-.|+.-+
T Consensus 67 k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rE--D~i-lypscfdANag~ 143 (417)
T KOG1359|consen 67 KKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGRE--DTI-LYPSCFDANAGA 143 (417)
T ss_pred cceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCC--ceE-EeccccccchHH
Confidence 34666654443 3 34455889988888887666655422 344556678999999998884 444 455555677777
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
+.++ +.|.|.|+.+...|.|+...++. |++.+ .+ + +-.++..+... +..+.++|
T Consensus 144 feai--------l~pedAvfSDeLNhASIIdGirL-ckry~----h~-------d----v~~l~~~l~~a--~k~r~klv 197 (417)
T KOG1359|consen 144 FEAI--------LTPEDAVFSDELNHASIIDGIRL-CKRYR----HV-------D----VFDLEHCLISA--CKMRLKLV 197 (417)
T ss_pred HHHh--------cChhhhhhccccccchhhhhhHH-Hhhhc----cc-------h----hHHHHHHHHHh--hhheEEEE
Confidence 7766 68999999999999999999876 56443 22 1 23333333211 14678999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc-------cc-ccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID-------VK-EIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~-------~~-~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
+-....++.|.+.|+++|..++++||. ++++|++|+-|..... +. ..++|++..++.|.++|..| |+..+
T Consensus 198 ~TDg~FSMDGdiaPl~ei~~La~kYga-LlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyttg 275 (417)
T KOG1359|consen 198 VTDGVFSMDGDIAPLEEISQLAKKYGA-LLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYTTG 275 (417)
T ss_pred EecceeccCCCcccHHHHHHHHHhcCc-EEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCccC
Confidence 999999999999999999999999999 9999999986554221 11 12589999999999877776 88888
Q ss_pred ecCccccCC---CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 267 RKSILSSDM---HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 267 ~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
++.++.. + ..|++ +..+.+.+-.-....+++.+. ....+.++.+.+.+++++..+.. |
T Consensus 276 p~~li~l-lrqr~Rpyl-------------FSnslppavV~~a~ka~dllm----~s~~~i~~~~a~~qrfr~~me~a-G 336 (417)
T KOG1359|consen 276 PKPLISL-LRQRSRPYL-------------FSNSLPPAVVGMAAKAYDLLM----VSSKEIQSRQANTQRFREFMEAA-G 336 (417)
T ss_pred ChhHHHH-HHhcCCcee-------------ecCCCChhhhhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHhc-C
Confidence 8877653 1 12221 112222212222334555555 35666778899999999988776 8
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
+.+.+..+...+++ +. +..-+.+.++.|.++ ||+|-....+.. ......||+.++..
T Consensus 337 ftIsg~~hPI~pv~---lG------da~lA~~~ad~lLk~-Gi~Vigfs~PvV-------------P~gkariRVqiSAa 393 (417)
T KOG1359|consen 337 FTISGASHPICPVM---LG------DARLASKMADELLKR-GIYVIGFSYPVV-------------PKGKARIRVQISAA 393 (417)
T ss_pred ceecCCCCCcccee---cc------cHHHHHHHHHHHHhc-CceEEeecCCcC-------------CCCceEEEEEEehh
Confidence 88766554322232 32 334566788888775 999854444422 23445799999989
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 012991 424 NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~ 442 (452)
+|+|||+++++++.++.+.
T Consensus 394 Ht~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 394 HTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999999888754
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=180.51 Aligned_cols=310 Identities=16% Similarity=0.199 Sum_probs=201.5
Q ss_pred hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH
Q 012991 72 DFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV 151 (452)
Q Consensus 72 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a 151 (452)
..|++...+....+++.++++.|. +.++++++|..|+..++.++ +++||+|+++...|.+....+..+.
T Consensus 47 ~~Y~R~gnPt~~~le~~la~Le~g---~~a~~~~SGmaAi~~~l~~l--------l~~Gd~iv~~~~~Y~~t~~~~~~~l 115 (386)
T PF01053_consen 47 YIYSRYGNPTVRALEQRLAALEGG---EDALLFSSGMAAISAALLAL--------LKPGDHIVASDDLYGGTYRLLEELL 115 (386)
T ss_dssp CSBTTTC-HHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHH--------S-TTBEEEEESSSSHHHHHHHHHCH
T ss_pred cceeccccccHHHHHHHHHHhhcc---cceeeccchHHHHHHHHHhh--------cccCCceEecCCccCcchhhhhhhh
Confidence 446666678889999999999988 47888899999999999887 6899999999999999988888777
Q ss_pred HhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcC-CCEEEEeccc
Q 012991 152 TRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEG-VDQVFVDAAH 230 (452)
Q Consensus 152 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~-~~~~ivD~a~ 230 (452)
.+.|+++.+++ ..+ .+++++++ .+++++|+++.|+||+..+.|+++|+++||++| + +++||.+.
T Consensus 116 ~~~gv~v~~~d----~~d----~~~l~~~l------~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~-~~vVDnT~ 180 (386)
T PF01053_consen 116 PRFGVEVTFVD----PTD----LEALEAAL------RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDI-LVVVDNTF 180 (386)
T ss_dssp HHTTSEEEEES----TTS----HHHHHHHH------CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT--EEEEECTT
T ss_pred cccCcEEEEeC----chh----HHHHHhhc------cccceEEEEEcCCCcccccccHHHHHHHHHHhCCc-eEEeeccc
Confidence 88999999994 333 78999999 579999999999999999999999999999998 9 89999988
Q ss_pred ccCCccccccccCccEEEEcCcccCcCCCC---cEEEEEec--CccccCCCCCceeccCCCCcccccccccccCcccccc
Q 012991 231 AMGSIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRK--SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLV 305 (452)
Q Consensus 231 ~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (452)
+.+.. .+.-.+|+|+++.|.+|++. +.| .|.+++++ ++... +. .. .. ..|....
T Consensus 181 atp~~-~~pL~~GaDivv~S~TKyl~-Ghsdv~~G~vv~~~~~~~~~~-l~-~~-~~-----------~~G~~~~----- 239 (386)
T PF01053_consen 181 ATPYN-QNPLELGADIVVHSATKYLS-GHSDVMGGAVVVNGSSELYDR-LR-EF-RR-----------LLGATLS----- 239 (386)
T ss_dssp THTTT-C-GGGGT-SEEEEETTTTTT-TSSSE-EEEEEESSHHHHHHH-HH-HH-HH-----------HHT-B-------
T ss_pred cceee-eccCcCCceEEEeecccccc-CCcceeeEEEEECchhhhhhh-hc-ch-hh-----------hcCccch-----
Confidence 76643 23334589999999999854 455 57777765 33332 10 00 00 0121111
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCCh
Q 012991 306 IPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGE 370 (452)
Q Consensus 306 ~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 370 (452)
-..+...++.+ ..+.--.++..+++..+.+.|.+.|.++ |..|. ...++++.|.++ ..
T Consensus 240 p~da~ll~rgl-~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~------~~ 312 (386)
T PF01053_consen 240 PFDAWLLLRGL-RTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELK------GG 312 (386)
T ss_dssp HHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEES------SH
T ss_pred HHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEec------cc
Confidence 11222222211 1455557778889999999999987663 44331 134679999986 33
Q ss_pred h-hHHHHHHHHhhhcceEeeeccc------CCCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 371 D-DALRLRGHLRVRFGVEVPIHYQ------APKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 371 ~-~~~~l~~~L~~~~gI~v~~~~~------~~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
. ....+.+.|. -+.+.+..+.. +.... +.... .+...+..++.||+|++ .||.+.+++.|++.++
T Consensus 313 ~~~~~~f~~~l~-l~~~~~SlGg~~SLi~~p~~~~-h~~~~~e~~~~~Gi~~~liRlSvG----lEd~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 313 EEAARRFLDALK-LFSIAPSLGGVESLISHPASTS-HRSLSPEERAEAGISDGLIRLSVG----LEDPDDLIADLEQALE 386 (386)
T ss_dssp HHHHHHHHHH-S-SSEESSS-SSSS-EEEETTCTT-TTTSCHHHHHHTTS-TTEEEEE------SS-HHHHHHHHHHHHH
T ss_pred hhhhHhHHhhhh-hHhhhhhcCCcccccccccchh-hccCChhhhhccCCCCCeeEEEec----cCCHHHHHHHHHHhcC
Confidence 3 5567777773 23333322211 10000 00000 01122567789999998 4667777877777653
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-19 Score=165.36 Aligned_cols=325 Identities=15% Similarity=0.178 Sum_probs=220.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|..++.+.+++.+....+. ..++.+ ..+...++.+.|++..+ . .+.++|++||+||++.++. ++|+|.. -
T Consensus 56 lGH~hP~iv~al~~Q~~kl~-h~sn~~---~~~~~~~la~~L~~~s~-~-~d~vff~NSGaEA~EaAiK-lARk~~~--~ 126 (404)
T COG4992 56 LGHCHPALVEALKEQAEKLW-HVSNLF---YNEPQAELAEKLVELSP-F-ADRVFFCNSGAEANEAALK-LARKYTG--D 126 (404)
T ss_pred cCCCCHHHHHHHHHHHHHhh-hccccc---CChHHHHHHHHHHhhCc-c-ccEEEEcCCcHHHHHHHHH-HHHHHcC--C
Confidence 45777889999999876652 222222 24456788888999887 2 5799999999999999998 6777743 1
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEE----eCCC-----CCCChHHHHHHHHHHHhccccCCCceEEEEEec
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEV----QLPF-----PLASEEEIINEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~----~~~~-----~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
....+||....+||+-....-. .+.+.++- |+.. |.++ +++++++| +++|.+|+++.
T Consensus 127 ~~k~~Iia~~nsFHGRT~galS----~t~~~ky~~~F~Pl~~g~~~vpfnD----i~al~~ai------~~~taAvivEP 192 (404)
T COG4992 127 PEKSKIIAFENSFHGRTLGALS----ATGQPKYRKGFGPLLPGFRHVPFND----IEALEAAI------DEDTAAVIVEP 192 (404)
T ss_pred CCCcEEEEEcCCcCCccceeee----ccCChhhccCCCCCCCCceecCCCC----HHHHHHHh------ccCeEEEEEec
Confidence 2345899988888874322211 01111110 1100 1122 79999999 67999999999
Q ss_pred cCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCc----cccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 199 ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSI----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 199 ~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
++--.|++.+ ++.+.++|++||+ ++|.|++|.. |-. ........+|+++.. |.|+|+..+|.++.++.
T Consensus 193 IQGEgGV~~~~~~fl~~lr~lCd~~g~-LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tla--K~LgGG~PigA~la~~~ 269 (404)
T COG4992 193 IQGEGGVIPAPPEFLKALRELCDEHGA-LLILDEVQTGLGRTGKLFAYEHYGVEPDILTLA--KALGGGFPIGAMLATEE 269 (404)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCe-EEEEeccccCCCccchHHHHHHhCCCCCEEEee--ccccCCccceeeEEchh
Confidence 9999999876 6789999999999 9999999863 322 123334468999887 99988777999988844
Q ss_pred ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcCC
Q 012991 270 ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSLGS 348 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~ 348 (452)
.... +.+- . ..+++.|.| .+..+..++++.+. .+.+.++.+++..++.+.|.++.. +.++.
T Consensus 270 ~~~~--~~~G------~---HgSTfGGNp--LacAv~~a~l~~l~-----~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~ 331 (404)
T COG4992 270 IASA--FTPG------D---HGSTFGGNP--LACAVALAVLEVLL-----EEGLLENVREKGEYLLQRLRELKRRYPLVK 331 (404)
T ss_pred hhhc--CCCC------c---ccCCCCcCH--HHHHHHHHHHHHHc-----chhHHHHHHHHHHHHHHHHHHHhhcCCcee
Confidence 3432 2221 0 011112222 12222333444444 466788899999999999988732 33444
Q ss_pred CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHH
Q 012991 349 PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~d 428 (452)
....++-++-+.+. ....+.++.+.+.++ |+.+-. ..++.+|+.+....+++|
T Consensus 332 ~vRG~GLmiGiel~------~~~~a~~~~~~~~~~-gvL~~~--------------------a~~~ViR~~PpL~i~~ee 384 (404)
T COG4992 332 EVRGRGLMIGIELK------EPYRARDIVRALREE-GVLVLP--------------------AGPNVIRFLPPLVITEEE 384 (404)
T ss_pred eeecceeEEEEEec------CcccHHHHHHHHHHC-CeEEec--------------------CCCCeEEecCCccCCHHH
Confidence 44455777777774 122478899999775 998742 234699999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 012991 429 YEKFRDAVILLVEEG 443 (452)
Q Consensus 429 i~~l~~~l~~~~~~~ 443 (452)
++..++++++.++..
T Consensus 385 i~~~~~~l~~~l~~~ 399 (404)
T COG4992 385 IDEALDALERALAAA 399 (404)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999754
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=178.00 Aligned_cols=344 Identities=14% Similarity=0.136 Sum_probs=215.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+..... ... .....+...++.++|++.+... .+.+.|+++|++|++.++. ++|.|....
T Consensus 55 ~lGh~~p~v~~ai~~q~~~~~~-~~~--~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~k-lar~~~~~~ 129 (423)
T PRK05964 55 THGHNHPYIDQAIREQLDRLDH-VIF--AGFTHEPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALK-MALQYWRNR 129 (423)
T ss_pred cCCCCCHHHHHHHHHHHhhCCC-ccc--cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHH-HHHHHHHhc
Confidence 4567778899999988765311 111 0112344567888888887532 4689999999999999998 445442111
Q ss_pred C-CCCCEEEEeCCcchhHHHHHHHHHHhcC---------cEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 127 F-HRNDTVLMLHCAFQAVKKSIQAYVTRAG---------GSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 127 ~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~g---------~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
- ..+.+|+....+|++....+..+..... ..+..++. +.++.... .+.+++.+++. .+++++|+
T Consensus 130 ~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~l~~~l~~~---~~~iaavi 204 (423)
T PRK05964 130 GEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPF--PPDGYEQATLDALEALLEKH---AGEIAAFI 204 (423)
T ss_pred CCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCC--CcchhHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 1 2346899999999887655433211100 11233332 22222222 78888888642 46788888
Q ss_pred Eec-cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC-CCcEEE
Q 012991 196 IDH-ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP-PSVAFL 264 (452)
Q Consensus 196 ~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~-~G~G~l 264 (452)
++. .....|...+ +++|.++|++||+ ++|+|++|+ +|-. ..+.....+|+++++ |++.|+ ..+|++
T Consensus 205 ~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~-llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~~p~~av 281 (423)
T PRK05964 205 VEPLVQGAGGMLFYDPRYLAELRRICDRHGV-LLIFDEIATGFGRTGTLFACEQAGVSPDIMCLS--KGLTGGYLPLAAT 281 (423)
T ss_pred EecccccCCCcccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCcCcchhHHHhcCCCCCeeeee--hhhhcCcccceEE
Confidence 887 5777787764 8899999999999 899999985 4322 112233467887665 998765 458888
Q ss_pred EEecCccccCCCCCceeccCCCCccccccccc--ccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIG--TRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
+.++++.+. +.... ... .....+ ..+.....+..++++.+.+ +.+.++..++.+++.+.|.++.
T Consensus 282 ~~~~~i~~~-~~~~~-----~~~---~~~~~~T~~~np~~~aaa~a~l~~l~~-----~~~~~~~~~~g~~l~~~l~~l~ 347 (423)
T PRK05964 282 LCTAEIFEA-FYSDD-----RAK---AFMHSPSYTANPLACAAANASLDLFED-----EPVLERVAALSAGLAEGLEPFR 347 (423)
T ss_pred EEcHHHHHh-hhcCC-----ccc---ccccCCCCCcCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHhhc
Confidence 888888775 21100 000 000011 1233334444455555553 3467888899999999988764
Q ss_pred CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 343 GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
...........+.++.+.+.+.. .......+...|.++ ||.+.. ..+.+|++++.
T Consensus 348 ~~~~i~~vrg~Gl~~~i~l~~~~---~~~~~~~l~~~l~~~-Gv~v~~---------------------~~~~lR~~p~l 402 (423)
T PRK05964 348 DLPGVADVRVLGAIGAVELDRPV---LERDGPALRAFALER-GVLLRP---------------------LGNTIYLMPPY 402 (423)
T ss_pred cCCCeEEeecccEEEEEEeccCc---chhHHHHHHHHHHHC-CeEEEe---------------------cCCEEEEeCCc
Confidence 33322222233566667664210 001256788888764 999852 12589999999
Q ss_pred cCCHHHHHHHHHHHHHHHhc
Q 012991 423 YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~~~ 442 (452)
.+|++||+++++++++++++
T Consensus 403 ~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 403 IITAEELDRITDAIVEVADE 422 (423)
T ss_pred ccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999998864
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-18 Score=167.80 Aligned_cols=345 Identities=14% Similarity=0.161 Sum_probs=231.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.|.+++++.+....-.... +...+...++.++|.+++..+....++|+++||+|++.++. ++|.+
T Consensus 70 ~GH~hP~Vv~Av~~q~~~~~h~~~~---~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiK-iAr~~----- 140 (447)
T COG0160 70 LGHNHPRVVEAVKRQLAKLNHTHTR---DLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIK-IARAY----- 140 (447)
T ss_pred cCCCCHHHHHHHHHHHHHhhcccCC---cccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHH-HHHHH-----
Confidence 4677788999999998876421111 22236677788888888876435788999999999999998 55544
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhc----------CcEEEEEeCCCCCCC--------hHHH-HHHHHHHHhccccCC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRA----------GGSVVEVQLPFPLAS--------EEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~----------g~~v~~~~~~~~~~~--------~~~~-~~~l~~~i~~~~~~~ 188 (452)
..+..||....+||+.......+.... ...+..+|.+.+... .... .+.++..+.......
T Consensus 141 Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~ 220 (447)
T COG0160 141 TGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGP 220 (447)
T ss_pred hCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCC
Confidence 446789999888888665544331111 123566665432221 1233 666777666555556
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCc----cccccccCccEEEEcCcccCcCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSI----KIDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~----~~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
.++++|+++.+....|.+.| ++++.++|++||+ ++|+|++|+. |-. .+......+|+++++ |.+.++.
T Consensus 221 ~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gi-llI~DEVQtG~GRTG~~fa~E~~gv~PDivt~a--K~ig~G~ 297 (447)
T COG0160 221 EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGI-LLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLA--KSLGGGL 297 (447)
T ss_pred CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCCccccchhhhhcCCCCCEEEec--ccccCCC
Confidence 78999999999999999876 7789999999999 8999999863 222 122223358999988 9888766
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
.+|.++.++++... .+-. ...++.|+ ..++.+++..++.+ ..+.+.++..++.+++++.|.
T Consensus 298 Pl~avv~r~ei~~~---~~g~---------~~~Tf~GN-----pva~Aaa~AvL~vi--e~e~L~~~a~~~G~~l~~~L~ 358 (447)
T COG0160 298 PLSAVVGRAEIMDW---PPGG---------HGGTFGGN-----PVACAAALAVLDVI--EEENLLERAAELGEYLRDRLE 358 (447)
T ss_pred ceeEEeccHHhccc---CCcc---------cCCCCCcC-----HHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHH
Confidence 68999999888774 2211 01111222 22334444444433 234789999999999999998
Q ss_pred HHcC-CCcCCCcccccceEEEEcCCc--cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 340 NAWG-TSLGSPPEICAAMVMVGLPSR--LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 340 ~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
++.. ...+......+.++.+.+-+. .+..+..-...+.+.+.++ |+.+-.. +...+.|
T Consensus 359 ~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~-Glil~~~------------------G~~~nvi 419 (447)
T COG0160 359 ELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFER-GLLLLTC------------------GPHGNVL 419 (447)
T ss_pred HHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCEEecc------------------CCCCcEE
Confidence 7643 344555544566666655311 1112223456788888775 9876422 2335899
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
||.+....++++++..+++|.+.+++
T Consensus 420 Ri~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 420 RILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred EEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 99999989999999999999998865
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=180.09 Aligned_cols=317 Identities=18% Similarity=0.197 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 80 KGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
...+++++.+++++|.+ .++.++|||.|+.+++.++ .+++||+|+++..+|.+...++.. .|.+++
T Consensus 25 ~~~~~fE~~~a~~~g~~---~~~~~~sgt~Al~~al~~l-------~~~~gdeVi~p~~t~~~~~~ai~~----~G~~pv 90 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVK---YAVAVSSGTSALHLALRAL-------GLGPGDEVIVPAYTFPATASAILW----AGAEPV 90 (363)
T ss_dssp HHHHHHHHHHHHHHTSS---EEEEESSHHHHHHHHHHHT-------TGGTTSEEEEESSS-THHHHHHHH----TT-EEE
T ss_pred HHHHHHHHHHHHHhCCC---eEEEeCChhHHHHHHHHhc-------CCCcCceEecCCCcchHHHHHHHH----hccEEE
Confidence 45899999999999984 8999999999999999998 468999999999999999888765 599999
Q ss_pred EEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc
Q 012991 160 EVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID 238 (452)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~ 238 (452)
+++++ . +...+ ++.+++.+ ++++++|+++|.. |...++++|.++|+++|+ ++|.|+||+.|...-+
T Consensus 91 ~~Di~--~-~~~~id~~~~~~~i------~~~t~ai~~~h~~---G~~~d~~~i~~~~~~~~i-~lIeD~a~a~g~~~~g 157 (363)
T PF01041_consen 91 FVDID--P-ETLNIDPEALEKAI------TPKTKAILVVHLF---GNPADMDAIRAIARKHGI-PLIEDAAQAFGARYKG 157 (363)
T ss_dssp EE-BE--T-TTSSB-HHHHHHHH------HTTEEEEEEE-GG---GB---HHHHHHHHHHTT--EEEEE-TTTTT-EETT
T ss_pred EEecc--C-CcCCcCHHHHHHHh------ccCccEEEEecCC---CCcccHHHHHHHHHHcCC-cEEEccccccCceeCC
Confidence 99653 1 33444 89999999 6889999998875 889999999999999999 8999999999875332
Q ss_pred --ccccCccEEEEcCc--ccCcCCCCcEEEEEecCccccCCCCCceeccCCCC----ccccccc-ccccCccccccHHHH
Q 012991 239 --VKEIGADFYVSNLH--KWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNG----LPIESAW-IGTRDYSAQLVIPSA 309 (452)
Q Consensus 239 --~~~~~~d~~~~s~~--K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~a 309 (452)
.-.. .|+.++|++ |.+.++.| |+++++++.+..++ ..+. ++|.. ....... .|...-.+-+....+
T Consensus 158 ~~~G~~-gd~~~fSf~~~K~i~~geG-G~v~~~~~~~~~~~-~~~~--~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAig 232 (363)
T PF01041_consen 158 RPVGSF-GDIAIFSFHPTKIITTGEG-GAVVTNDPELAERA-RALR--NHGRSRDAFRRYRHELPPGYNFRMSELQAAIG 232 (363)
T ss_dssp EETTSS-SSEEEEESSTTSSS-SSS--EEEEESTHHHHHHH-HHHT--BTTEETSECSTTEESSSS--B-B-BHHHHHHH
T ss_pred EeccCC-CCceEecCCCCCCCcCCCC-eeEEecHHHHHHHh-hhhh--ccCcCccccccccccccCCcccccHHHHHHHH
Confidence 1122 488888875 98766666 88888865544301 1110 01110 0000000 121122222222233
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CCcc---cccceEEEEcCCccccCChhhHHHHHHHHhhhcc
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG-SPPE---ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFG 385 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 385 (452)
+..+. -++...++-+++.+.+.+.|...+++... .++. .....+.+.+++. ...+.+++.+.|.++ |
T Consensus 233 l~QL~----~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~----~~~~rd~l~~~L~~~-G 303 (363)
T PF01041_consen 233 LAQLK----RLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDE----ALADRDELVEALRAR-G 303 (363)
T ss_dssp HHHHH----THHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCC----GCSTHHHHHHHHHHT-T
T ss_pred HHHHH----HhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccc----ccchHHHHHHHHHHC-C
Confidence 44444 46777777889999999999988776332 2222 1233444555421 013577899999876 9
Q ss_pred eEeeeccc-CCCCCCCCCCC-------CCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 386 VEVPIHYQ-APKDDGQPQAG-------ARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 386 I~v~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
|.....+. +.+.-...... +-.+.......|.+.++...+.+|+++++++|+
T Consensus 304 I~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 304 IETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp BEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred CcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 99976652 21100000000 000001224468888888889999999999885
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-19 Score=174.20 Aligned_cols=339 Identities=12% Similarity=0.144 Sum_probs=206.5
Q ss_pred CCCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.+...+.+..+ ..++..+.+.+++.+.+.... .... ....+...++.++++++.+. +++++++||++|+
T Consensus 37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~~~la~~l~~~~~~---~~v~~~~gg~eA~ 109 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLI-HTSN---LYYIEPQEELAEKLVELSGM---DKVFFCNSGAEAN 109 (396)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcc-cccc---ccCCHHHHHHHHHHHhhcCC---CEEEECCCcHHHH
Confidence 34455555432 235555669999988776431 1111 11356677888889888765 6999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh-----HHHHHHHHHHHhcccc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE-----EEIINEFKKGIEKGKK 186 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~-----~~~~~~l~~~i~~~~~ 186 (452)
..++.++. .+......+.++|++..+.|++.......+ .+......... +.... ...++++++.+
T Consensus 110 ~~al~~a~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~d~~~l~~~i----- 179 (396)
T PRK02627 110 EAAIKLAR-KYGHKKGIEKPEIITAENSFHGRTLATLSA---TGQPKYQEGFE-PLVEGFIYVPFNDIEALKAAI----- 179 (396)
T ss_pred HHHHHHHH-HHhcccCCCCCeEEEECCCcCcccHHHHHh---cCCccccccCC-CCCCCceEeCCCCHHHHHHhc-----
Confidence 99999653 221100112378999988887643332221 12111100000 10000 00268888888
Q ss_pred CCCceEEEEEeccCCCCcc-ccc---HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCV-VIP---VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~-~~~---l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g 257 (452)
++++++|+++.+++++|. ..| +++|.++|++||+ ++|+|++++ ++.. ..+.....+|+++ ++|.+.+
T Consensus 180 -~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t--~sK~~~~ 255 (396)
T PRK02627 180 -TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGI-LLILDEVQTGMGRTGKLFAYQHYGIEPDIMT--LAKGLGG 255 (396)
T ss_pred -CCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhcCCCccCceeeehhcCCCCCEEE--EcchhhC
Confidence 578999999999999994 443 7899999999999 899999987 3321 1122233467665 5698654
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
+..+|++++++++.+. + .... ... +...+...+.+..++++.+.+ +.+.++.+++.+++.+.
T Consensus 256 G~rig~~~~~~~~~~~-~-~~~~---------~~~--t~~~~~~~~~aa~~~l~~~~~-----~~~~~~~~~~~~~~~~~ 317 (396)
T PRK02627 256 GVPIGAVLAKEKVADV-F-TPGD---------HGS--TFGGNPLACAAALAVIEIIEE-----EGLLENAAEVGEYLRAK 317 (396)
T ss_pred CcccEEEEEcHHHHhc-c-CCCC---------CCC--CCCCCHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHH
Confidence 4448999988877664 2 1110 000 011222334444445554432 34566677777777777
Q ss_pred HHHHc-CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 338 LANAW-GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 338 L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
|.++. ...........+.++++.++ .+..++.+.|.++ ||.+... ..+++
T Consensus 318 l~~~~~~~~~~~~~~~~g~~~~i~~~--------~~~~~~~~~l~~~-Gv~v~~~--------------------~~~~l 368 (396)
T PRK02627 318 LRELLEKYPGIKEVRGLGLMIGIELD--------RPAAEIVKKALEK-GLLINVT--------------------GDNVL 368 (396)
T ss_pred HHHHHHhCCCeeeeccCcEEEEEEec--------CcHHHHHHHHHHC-CeEEeec--------------------CCCEE
Confidence 76642 12122122223567777663 2467888888776 9998532 13689
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++...+++++++++++|++++++
T Consensus 369 Ri~~~~~~~~~~i~~~~~~l~~~l~~ 394 (396)
T PRK02627 369 RLLPPLIISKEEIDEAVDRLEEVLKE 394 (396)
T ss_pred EEECCcccCHHHHHHHHHHHHHHHHh
Confidence 99998778999999999999998754
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-19 Score=174.75 Aligned_cols=324 Identities=12% Similarity=0.083 Sum_probs=202.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+......+ .. ...+...++.+++++..+. +++++++||++|+..++.++. .+.
T Consensus 44 ~lGh~~p~v~~a~~~~~~~~~~~~-~~---~~~~~~~~la~~l~~~~~~---~~v~~~~sGseA~~~al~~ar-~~~--- 112 (389)
T PRK01278 44 SLGHAHPHLVEALKEQAEKLWHVS-NL---YRIPEQERLAERLVENSFA---DKVFFTNSGAEAVECAIKTAR-RYH--- 112 (389)
T ss_pred cCCCCCHHHHHHHHHHHHhcCccc-cc---cCChHHHHHHHHHHhhCCC---CEEEEcCCcHHHHHHHHHHHH-HHH---
Confidence 356777889999999876531111 11 1234556788888887744 589999999999999998652 221
Q ss_pred CCCCC----EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh---H--HHHHHHHHHHhccccCCCceEEEEEe
Q 012991 127 FHRND----TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE---E--EIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 127 ~~~g~----~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~---~--~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
..+|+ +|++.++.|++....+... .+.. .......+...+ . ..++.+++.+ .+++++|+++
T Consensus 113 ~~~G~~~r~~vi~~~~~yhg~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~l------~~~~~avive 182 (389)
T PRK01278 113 YGKGHPERYRIITFEGAFHGRTLATIAA---GGQE-KYLEGFGPLVPGFDQVPFGDIEALKAAI------TPNTAAILIE 182 (389)
T ss_pred HhcCCCCCCEEEEECCCcCCCcHHHHhc---cCCh-hhcccCCCCCCCceEeCCCCHHHHHHhh------CCCeEEEEEe
Confidence 23443 8999999998876555332 1211 111000000000 0 0168888888 4689999999
Q ss_pred ccCCCCcccc----cHHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCCCCcEEEEEec
Q 012991 198 HITSMPCVVI----PVRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRK 268 (452)
Q Consensus 198 ~~~n~tG~~~----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~ 268 (452)
.+++++|... .+++|.++|++||+ ++|+|++++ +|.. ..+.....+|++ +++|.+.++..+|++++++
T Consensus 183 p~~~~~G~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~ 259 (389)
T PRK01278 183 PIQGEGGIRPAPDEFLKGLRQLCDENGL-LLIFDEVQCGMGRTGKLFAHEWAGVTPDIM--AVAKGIGGGFPLGACLATE 259 (389)
T ss_pred cccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCCcceeecccCCCCCEE--EEehhccCCcceEEEEEcH
Confidence 9988888543 47899999999999 799999987 3221 112223346765 4569876443488988887
Q ss_pred CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CC-c
Q 012991 269 SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TS-L 346 (452)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~-~ 346 (452)
++.+. + .... . . .+.+.+...+.+..++++.+.+ +.+.++.+++.+++.+.|.++.. .. +
T Consensus 260 ~~~~~-~-~~~~---~------~--~t~~~~~~~~aaa~a~l~~l~~-----~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 321 (389)
T PRK01278 260 EAAKG-M-TPGT---H------G--STYGGNPLAMAVGNAVLDVILA-----PGFLDNVQRMGLYLKQKLEGLVDRFPDV 321 (389)
T ss_pred HHHhc-c-CCCC---C------C--CCCCccHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 77664 2 1110 0 0 0112233344444455666543 23455667777777777766421 11 2
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.......+.++++.++ .+..++++.|.++ ||.+.++ ..+++|++++...++
T Consensus 322 ~~~v~g~G~~~~i~~~--------~~~~~~~~~l~~~-GV~~~p~--------------------~~~~lR~~p~~~~~~ 372 (389)
T PRK01278 322 IEEVRGKGLLLGLKCV--------VPNRDLVQALRDE-GLLTVGA--------------------GDNVVRLLPPLIITE 372 (389)
T ss_pred eeeEecccEEEEEEEe--------cCHHHHHHHHHHC-CeEEeec--------------------CCCEEEEeCCcccCH
Confidence 2222223456666553 1467888998876 9987432 236899999877899
Q ss_pred HHHHHHHHHHHHHHh
Q 012991 427 EDYEKFRDAVILLVE 441 (452)
Q Consensus 427 ~di~~l~~~l~~~~~ 441 (452)
+++++++++|+++++
T Consensus 373 ~~i~~~l~~l~~~l~ 387 (389)
T PRK01278 373 EEIDEALERLERAAE 387 (389)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-19 Score=180.17 Aligned_cols=385 Identities=15% Similarity=0.034 Sum_probs=236.1
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDD-FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
|+.+-..++.+++++..+..... +.+... -.+.....+.+++-+++++++|.+ ...-.||+|||.|+..++.+...
T Consensus 86 y~ghm~~~~~~paila~~~a~~~--N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~-~~~G~~TsGGT~ANl~aL~~AR~ 162 (608)
T TIGR03811 86 YWGHMNSETLMPAILAYNYAMLW--NGNNVAYESSPATSQMEEEVGKEFATLMGYK-NGWGHIVADGSLANLEGLWYARN 162 (608)
T ss_pred eEEECcCCCCHHHHHHHHHHHHh--CCCCCccccCchHHHHHHHHHHHHHHHhCCC-CCCeEEeCChHHHHHHHHHHHHH
Confidence 55555555666655554443332 222222 234566788899999999999997 45678999999999887775432
Q ss_pred ccccC----CC----------------------------------------CCC------CEEEEeCCcchhHHHHHHHH
Q 012991 121 GFTEG----RF----------------------------------------HRN------DTVLMLHCAFQAVKKSIQAY 150 (452)
Q Consensus 121 ~~~~~----~~----------------------------------------~~g------~~Vl~~~~~~~s~~~~~~~~ 150 (452)
..... .. .+| .+|+++...|.|..++...+
T Consensus 163 ~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il 242 (608)
T TIGR03811 163 IKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII 242 (608)
T ss_pred hhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc
Confidence 11000 00 000 15788888899998887654
Q ss_pred HHhcCc---EEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHH---HHcCCC-
Q 012991 151 VTRAGG---SVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKIC---RDEGVD- 222 (452)
Q Consensus 151 a~~~g~---~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~---~~~~~~- 222 (452)
|+ .++.+ |.++++++ ++.|+++|++...++..+-+|+.+.+++.+|.+.|+++|+++| +++|+|
T Consensus 243 ----GlG~~~vv~V----pvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~ 314 (608)
T TIGR03811 243 ----GIGLDQVIPV----PVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYF 314 (608)
T ss_pred ----CCCcccEEEe----ecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCce
Confidence 77 57888 55667777 9999999976544455678899999999999999999999999 668873
Q ss_pred EEEEecccccCC--c---------ccc--------------------------cc-ccCccEEEEcCcccCcCCCCcEEE
Q 012991 223 QVFVDAAHAMGS--I---------KID--------------------------VK-EIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 223 ~~ivD~a~~~g~--~---------~~~--------------------------~~-~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
++|||+|++... + |.+ +. --.+|.++.++|||++.|+++|++
T Consensus 315 ~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~l 394 (608)
T TIGR03811 315 YLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGI 394 (608)
T ss_pred eEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEE
Confidence 499999987532 1 110 00 126899999999999999999999
Q ss_pred EEecCcccc--CCCCCceeccCCCCc---ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 265 YCRKSILSS--DMHHPVVSHEFGNGL---PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 265 ~~~~~~~~~--~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
++|+..+.. ....+|+... +... .......|+.+....++++.+++.+.--..|+.++.++..++++++.+.|.
T Consensus 395 l~Rd~~~~~~~~~~a~Yl~~~-~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~ 473 (608)
T TIGR03811 395 VIQDIRMRDVISYFATYVFEK-GADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLN 473 (608)
T ss_pred EEeCHHHHHHHhcCcchhccc-cccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998654322 1123333211 1111 111223355554556667777777621113899999999999999999998
Q ss_pred HH------cCCCc--CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceE----------eeecccC-CCCCCC
Q 012991 340 NA------WGTSL--GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVE----------VPIHYQA-PKDDGQ 400 (452)
Q Consensus 340 ~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~----------v~~~~~~-~~~~~~ 400 (452)
+. +.+++ ..++. .++++|.+... +..+-....++.+.+.++..+. +...... ...| +
T Consensus 474 ~~~~~~~~~~~el~~~~~pd--lniV~Fr~~~~-g~~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg-~ 549 (608)
T TIGR03811 474 NLEFKVGDKEIEVHPLTKPD--FNMVDYVFNEK-GNDDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYG-D 549 (608)
T ss_pred hcccccCCCCeeEEecCCCC--cceEEEEEecC-CCccHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhh-h
Confidence 84 33444 44444 67888876311 0001112344555554443321 1111111 0001 1
Q ss_pred CCCCCCCCC---------CCccceEEeccc--ccCCHHHHHHHHHHHHHHHhc
Q 012991 401 PQAGARDKD---------GIITGYARISHQ--VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 401 ~~~~~~~~~---------~~~~~~iRis~~--~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.....++. ...-..+|.+++ +.++.+.++.+++.|++.+.+
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~ 602 (608)
T TIGR03811 550 SPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQE 602 (608)
T ss_pred hHHHHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHHH
Confidence 110011111 122346899874 334556688888888888764
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-21 Score=183.69 Aligned_cols=280 Identities=16% Similarity=0.239 Sum_probs=188.9
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
..+...+.++++.+|+.||++ ...++++|+|.++..++.++ +++||+|++++.+|.|++.++.. .|
T Consensus 62 ~~p~G~I~eAe~~aA~~fGAd--~t~flvnGsT~g~~a~i~a~--------~~~gd~VLv~RN~HkSv~~alil----~g 127 (417)
T PF01276_consen 62 HDPEGIIKEAEELAARAFGAD--KTFFLVNGSTSGNQAMIMAL--------CRPGDKVLVDRNCHKSVYNALIL----SG 127 (417)
T ss_dssp TTTBTHHHHHHHHHHHHHTES--EEEEESSHHHHHHHHHHHHH--------TTTTCEEEEETT--HHHHHHHHH----HT
T ss_pred cCCccHHHHHHHHHHHhcCCC--eEEEEecCchHHHHHHHHHh--------cCCCCEEEEcCCcHHHHHHHHHH----cC
Confidence 445678999999999999996 77888899999999999988 58999999999999999988765 49
Q ss_pred cEEEEEeCCCCCCChH--------HH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEE
Q 012991 156 GSVVEVQLPFPLASEE--------EI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFV 226 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~~--------~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~iv 226 (452)
++++++++.. ++.+ .+ .+.++++|++.+.. ..+++|++++|++ .|...++++|+++|+++++ +++|
T Consensus 128 a~Pvyi~p~~--~~~gi~~~i~~~~~~~~~i~~~l~~~p~~-k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~-~llv 202 (417)
T PF01276_consen 128 AIPVYIPPED--NEYGIIGGISPDEFNEEDIEEALKEHPDA-KAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGI-PLLV 202 (417)
T ss_dssp EEEEEEEEEE---TTS-BEEB-GGGGSHHHHHHHHHHCTTC-HCESEEEEESS-T-TSEEE-HHHHHHHHCCTEC-EEEE
T ss_pred CeEEEecCCc--cccCCccCCChhhhhHHHHHHHHHhCccc-cCceEEEEeCCCC-CeEEECHHHHHHHhcccCC-EEEE
Confidence 9999997531 1111 12 38899999874321 1256699999876 7999999999999999999 8999
Q ss_pred ecccccC----CccccccccCcc-------EEEEcCcccCcCCCCcEEEEEecCc-ccc-CCCCCceeccCCCCcccccc
Q 012991 227 DAAHAMG----SIKIDVKEIGAD-------FYVSNLHKWFFCPPSVAFLYCRKSI-LSS-DMHHPVVSHEFGNGLPIESA 293 (452)
Q Consensus 227 D~a~~~g----~~~~~~~~~~~d-------~~~~s~~K~l~g~~G~G~l~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~ 293 (452)
|+||+.= ..+.+....++| +++.|.||.+.+....+++.++.+. +.. ++... ....
T Consensus 203 DEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~-----------l~~~ 271 (417)
T PF01276_consen 203 DEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEA-----------LSMH 271 (417)
T ss_dssp E-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHH-----------HHHH
T ss_pred EccccccccCCCCccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHH-----------HHHH
Confidence 9998641 223344556889 9999999999999999999998876 432 01000 1223
Q ss_pred cccccCccccccHHHHHHHH-HHhhcCHHHHHHHHHHHHHHHHHHHH---HHcCCCcCCCccc--cc-------------
Q 012991 294 WIGTRDYSAQLVIPSAVTFV-SRFEGGIDGIMQRNHEQALKMARMLA---NAWGTSLGSPPEI--CA------------- 354 (452)
Q Consensus 294 ~~~~~~~~~~~~~~~al~~~-~~~~~g~~~~~~~~~~~~~~l~~~L~---~~~~~~~~~~~~~--~~------------- 354 (452)
.+.+|++..+.++..+.+++ ... | +.+.++..+++..+++.|. +.+++++..++.- ..
T Consensus 272 ~TTSPSY~lmASlD~a~~~m~~~~--G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf 348 (417)
T PF01276_consen 272 QTTSPSYPLMASLDVARAQMEEEE--G-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGF 348 (417)
T ss_dssp S-SS--HHHHHHHHHHHHHHSHHH--H-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--
T ss_pred cCCChHHHHHHHHHHHHHHHhhhh--h-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhc
Confidence 45789999999999998888 432 4 4566667788888888884 4455555554320 00
Q ss_pred -----ce-------EEEEcCCcc--c--cCChhhHHHHHHHHhhhcceEee
Q 012991 355 -----AM-------VMVGLPSRL--R--VMGEDDALRLRGHLRVRFGVEVP 389 (452)
Q Consensus 355 -----~~-------~~~~~~~~~--~--~~~~~~~~~l~~~L~~~~gI~v~ 389 (452)
.+ +.+..|... + .+.+.++..+.+.|+++ ||.+.
T Consensus 349 ~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~-~I~~E 398 (417)
T PF01276_consen 349 EGLADDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREH-GIQVE 398 (417)
T ss_dssp TT--TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHT-TEE-S
T ss_pred hhcccCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHc-CCEEE
Confidence 01 122222100 0 12367888899999875 99984
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-19 Score=172.35 Aligned_cols=328 Identities=11% Similarity=0.106 Sum_probs=202.0
Q ss_pred CCCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.++.++.+..+ ..|..++.+.+++.+.+..... .+. ....+...++.+.+++..+. +.+++++||++|+
T Consensus 27 ~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~---~~~~~~~~~la~~l~~~~~~---~~~~~~~sG~~a~ 99 (377)
T PRK02936 27 NGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWH-VSN---LFTNSLQEEVASLLAENSAG---DLVFFCNSGAEAN 99 (377)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc-ccc---ccCCHHHHHHHHHHHhcCCC---CEEEEeCCcHHHH
Confidence 34555555444 4567788899999998865311 111 11134455555666655443 5899999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc---------EEEEEeCCCCCCChHHHHHHHHHHHh
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG---------SVVEVQLPFPLASEEEIINEFKKGIE 182 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~---------~v~~~~~~~~~~~~~~~~~~l~~~i~ 182 (452)
..++... +. ...+++|++.++.|++.......+...... .+..+ +.++ .+.+++.+
T Consensus 100 ~~A~~~a-~~-----~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~~- 164 (377)
T PRK02936 100 EAALKLA-RK-----HTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHV----PFND----IKALKEVM- 164 (377)
T ss_pred HHHHHHH-HH-----hcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEe----CCCC----HHHHHHhc-
Confidence 9999843 22 134467888888777543333221110000 11122 2121 57888888
Q ss_pred ccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc--ccc--ccccCccEEEEcCcc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI--KID--VKEIGADFYVSNLHK 253 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~--~~~--~~~~~~d~~~~s~~K 253 (452)
.+++++|+++.++++.|...+ +++|.++|++||+ ++|+|++|+ +|.. .+. .....+|++ +++|
T Consensus 165 -----~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~-~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK 236 (377)
T PRK02936 165 -----NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGA-LLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAK 236 (377)
T ss_pred -----cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCchhhHHHhhCCCCcEE--EEcc
Confidence 467899999999998887743 8899999999999 899999985 2221 111 112346765 4679
Q ss_pred cCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 012991 254 WFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 254 ~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~ 333 (452)
.+.+..-+|+++.++++.+. + .... ... +...+...+.+..++++.+.. +...++++++.++
T Consensus 237 ~l~~G~~ig~v~~~~~~~~~-~-~~~~---------~~~--t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~ 298 (377)
T PRK02936 237 GLGNGIPVGAMIGKKELGTA-F-GPGS---------HGS--TFGGNPLAMAAAKEVLQVIKQ-----PSFLEEVQEKGEY 298 (377)
T ss_pred cccCCCccEEEEEcHHHHhh-c-cCCC---------CCC--CCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHH
Confidence 86543237888888777664 2 1110 000 112333344455555555432 3445677788888
Q ss_pred HHHHHHHH-cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 334 MARMLANA-WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 334 l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
+++.|.+. .++.........+.++++.+++ +...+.+.|.+ .||.+.. ..
T Consensus 299 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~--------~~~~~~~~l~~-~gv~v~~--------------------~g 349 (377)
T PRK02936 299 FLQKLQEELEHLECVKNIRGKGLMIGIECTE--------EVAPVIEQLRE-EGLLVLS--------------------AG 349 (377)
T ss_pred HHHHHHHHHhhCCcEEeEeecceEEEEEecc--------hHHHHHHHHHH-CCeEEec--------------------CC
Confidence 88888763 2333222211235678887751 25678888866 4998842 12
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
.+++|++++...+++++++++++|++++
T Consensus 350 ~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 350 PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 3689999988889999999999998753
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-19 Score=173.88 Aligned_cols=327 Identities=11% Similarity=0.114 Sum_probs=206.0
Q ss_pred HHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc-cccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 81 GILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG-FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 81 ~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~-~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
...++++.++++++.+ .+++++|||+|+.+++.++.+. +.+..+++||+|+++.++|.+...++.. .|.+++
T Consensus 64 ~~~~fe~~lA~~~g~~---~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~----~G~~pv 136 (438)
T PRK15407 64 FNDAFEKKLAEFLGVR---YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQ----NGLVPV 136 (438)
T ss_pred hHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHH----cCCEEE
Confidence 3678999999999984 6899999999999999876421 1111358899999999999998777654 599999
Q ss_pred EEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc
Q 012991 160 EVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID 238 (452)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~ 238 (452)
.++++. ....+ ++.+++.+ ++++++|+++|+ .|...++++|.++|+++|+ ++|+|++|+.|...-+
T Consensus 137 ~vdvd~---~~~~id~~~le~~i------~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi-~vIeDaa~a~G~~~~g 203 (438)
T PRK15407 137 FVDVEL---PTYNIDASLLEAAV------SPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNL-WLIEDNCDALGSTYDG 203 (438)
T ss_pred EEecCC---CcCCcCHHHHHHHc------CcCCeEEEEeCC---CCChhhHHHHHHHHHHCCC-EEEEECccchhhhcCC
Confidence 986531 22334 88999988 678999999874 6888899999999999999 8999999999986543
Q ss_pred --ccccCccEEEEcCc--ccCcCCCCcEEEEEecCccccCCCCCceeccCCCC---------------------ccc--c
Q 012991 239 --VKEIGADFYVSNLH--KWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNG---------------------LPI--E 291 (452)
Q Consensus 239 --~~~~~~d~~~~s~~--K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~---------------------~~~--~ 291 (452)
...++ |+.++|++ |.+..+.| |+++++++.+.. ....+. ++|.. .+. .
T Consensus 204 ~~~G~~g-d~~~fSf~~~k~~~~geG-G~l~t~d~~l~~-~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (438)
T PRK15407 204 RMTGTFG-DIATLSFYPAHHITMGEG-GAVFTNDPLLKK-IIESFR--DWGRDCWCAPGCDNTCGKRFGWQLGELPFGYD 278 (438)
T ss_pred eeeeccC-ceEEEeCCCCCCccccCc-eEEEECCHHHHH-HHHHHH--HhCccccccccccccccccccccccccccccc
Confidence 22333 77777765 65666666 899988766654 111110 01110 000 0
Q ss_pred ----cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCC-ccccc--ceEEEEcCC
Q 012991 292 ----SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSLGSP-PEICA--AMVMVGLPS 363 (452)
Q Consensus 292 ----~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~-~~~~~--~~~~~~~~~ 363 (452)
....|...-.+-+....++..+. .++.+.++-+++++++.+.|..+++ +.+... +.... ..+.+.+++
T Consensus 279 ~~~~~~~~G~n~rmsel~AAig~~qL~----~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 354 (438)
T PRK15407 279 HKYTYSHLGYNLKITDMQAAIGLAQLE----KLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKE 354 (438)
T ss_pred ccccccccccccCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECC
Confidence 00112222222222333344444 3566777778888888888987654 333222 22112 223333331
Q ss_pred ccccCChhhHHHHHHHHhhhcceEeeeccc-CCCCCCCCCC-CC--CCCC----CCccceEEecccccCCHHHHHHHHHH
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQ-APKDDGQPQA-GA--RDKD----GIITGYARISHQVYNTLEDYEKFRDA 435 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~-~~~~~~~~~~-~~--~~~~----~~~~~~iRis~~~~~t~~di~~l~~~ 435 (452)
. .+.+.+++.+.|.++ ||..+..+. +.+.-..... .. ...+ ......|-+.++..-|++|+++++++
T Consensus 355 ~----~~~~Rd~l~~~L~~~-GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~ 429 (438)
T PRK15407 355 D----AGFTRVELVKYLEEN-KIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEK 429 (438)
T ss_pred c----CCCCHHHHHHHHHHC-CCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHH
Confidence 0 134567899999775 998765443 2111000000 00 0000 01234566666666689999999999
Q ss_pred HHHHHh
Q 012991 436 VILLVE 441 (452)
Q Consensus 436 l~~~~~ 441 (452)
|+++++
T Consensus 430 i~~~~~ 435 (438)
T PRK15407 430 IEEFFG 435 (438)
T ss_pred HHHHHh
Confidence 999875
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=175.34 Aligned_cols=316 Identities=17% Similarity=0.176 Sum_probs=198.9
Q ss_pred hhHHHHHHHHHHHhHhCCCCCCcEEEecChh-HHHHHHHHHhhcccccCCCC-CCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 78 LRKGILESRAAVKDLINADDVGEISLVDNAT-TAAAIVLQQIGRGFTEGRFH-RNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 78 ~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t-~a~~~~~~~l~~~~~~~~~~-~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
...+..++++.+++++|++.....++++|+| .++.+++.++. ... ++++|+++..+|.|..+++.. .|
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr------~~~~~gd~VI~p~~th~S~~kAi~~----~G 172 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALR------HKRPKAKYVIWPRIDQKSCIKAIST----AG 172 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcC------CcCCCCCEEEEECcChHHHHHHHHH----cC
Confidence 3567888999999999996445688999999 68888887662 112 589999999999999888765 59
Q ss_pred cEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC-CCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 156 GSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT-SMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~-n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
++++.+++..+ ++...+ +++++++|+.. +.+..++++..++ +..|...|+++|+++|++||+ ++|+|+||+.+
T Consensus 173 ~~pv~Vd~~~d-~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI-~lIvDaAyg~~ 247 (444)
T TIGR03531 173 FEPRVIETVLD-GDELTTDVEDIERAIEEI---GPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDI-PHIVNNAYGLQ 247 (444)
T ss_pred CeEEEeeeeec-CcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCC-EEEEECcCcCc
Confidence 99999964111 223445 89999999632 2244555554443 445688999999999999999 69999999976
Q ss_pred Cccc-----ccccc-CccEEEEcCcccCcCCCCcEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccH
Q 012991 234 SIKI-----DVKEI-GADFYVSNLHKWFFCPPSVAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVI 306 (452)
Q Consensus 234 ~~~~-----~~~~~-~~d~~~~s~~K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (452)
.... .-... .+|++++|+||++..|.+.|+++++ +++++. +... +.+. ..+... ..+
T Consensus 248 ~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~-i~~~-----y~g~---------~~~s~~-~~~ 311 (444)
T TIGR03531 248 SNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQE-ISKS-----YPGR---------ASASPS-LDV 311 (444)
T ss_pred ChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHH-HHHh-----ccCC---------CCChHH-HHH
Confidence 5321 11112 3799999999997777766777674 444443 2111 1110 011111 222
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhh
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR 383 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 383 (452)
+..+..+.. .|++++.++..++++++.+.|.++. |.++...+.+ ..-+.+.+... .+.+...+-..|..+
T Consensus 312 ~~~ll~~G~--~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n-~is~~~~~~~~----~~~~~~~~g~~l~~~ 384 (444)
T TIGR03531 312 LITLLSLGS--KGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPEN-PISSAMTLSTL----KGKDPTMLGSMLYSR 384 (444)
T ss_pred HHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCC-ceeEEEecccc----cccCHHHHHHHHHhC
Confidence 222222222 2788888888899999999987753 4444433321 12233444210 133567787788654
Q ss_pred cceEeee-----------cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 384 FGVEVPI-----------HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 384 ~gI~v~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+|--+. ++.+.+-|.++. .....++-++.....+.+||+.+++.|+++
T Consensus 385 -~v~g~r~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 385 -RVTGPRVVTNGDSKTVGGCEFKGYGSHTS-------NYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred -CCCCceeecCCCceEECCEEeeccccccc-------CCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 553211 111111111111 123347777777778999999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=176.04 Aligned_cols=307 Identities=14% Similarity=0.173 Sum_probs=198.1
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++.++++.|.+ ..+.+++|+.|+.+++.++ +++||+|+++...|......+......
T Consensus 58 Y~r~~~P~~~~lE~~la~leg~~---~av~~sSG~aAi~~al~al--------l~~GD~Vl~~~~~yg~t~~~~~~~~~~ 126 (384)
T PRK06434 58 YTRWGNPTVQAFEEKYAVLENAE---HALSFSSGMGAITSAILSL--------IKKGKRILSISDLYGQTFYFFNKVLKT 126 (384)
T ss_pred eeCCCChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH--------hCCCCEEEEecCccchHHHHHHHHHHh
Confidence 55556677899999999999984 6788899999999999876 589999999888777766666555677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++++++ ++. +.++ ++ .+++++|++++++||++.+.|+++|.++|+++++ +||++++.+
T Consensus 127 ~Gi~v~fvd~----~~~----~~~~--l~-----~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~l---vVD~t~~s~ 188 (384)
T PRK06434 127 LGIHVDYIDT----DRL----NSLD--FD-----PSNYDLIYAESITNPTLKVPDIKNVSSFCHENDV---IVDATFASP 188 (384)
T ss_pred cCcEEEEECC----CCh----hhee--ec-----CCCeeEEEEEcCCCCCceeecHHHHHHHHHHcCe---EEECCCCCc
Confidence 8999999954 221 1222 31 3479999999999999999999999999999976 459998765
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
...-.+ ..++|++++|.+|++.|+.+ .|+++.+++.+...+. .....+ |.... . +.+++-
T Consensus 189 ~~~~pl-~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~--~~~~~~-----------G~~~~-~---~~A~l~ 250 (384)
T PRK06434 189 YNQNPL-DLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLV--ERRKTL-----------GSNPD-P---IQAYLA 250 (384)
T ss_pred ccCCch-hcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHH--HHHHhc-----------CCCCC-H---HHHHHH
Confidence 542222 35799999999999877553 4666665443322011 000011 11110 1 122221
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------ccccceEEEEcCCccccCChhhHHHHHHHHhh
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------EICAAMVMVGLPSRLRVMGEDDALRLRGHLRV 382 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 382 (452)
... -..++...++..+++..+.+.|...|.++ |..|. ...++++.|.++ +...+.++.+.|.
T Consensus 251 ~~g--L~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~------~~~~~~~f~~~l~- 321 (384)
T PRK06434 251 LRG--LKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR------SMEDVHKFIRNLE- 321 (384)
T ss_pred HhC--CCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEEC------CHHHHHHHHHhCC-
Confidence 111 12466677788899999999999988763 54442 135889999885 2334556666663
Q ss_pred hcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 383 RFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 383 ~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
-+.+.+..+... +....+..... +...+..++.||+|++. ||++.+++.|++.+
T Consensus 322 l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGl----Ed~~dLi~dl~~Al 382 (384)
T PRK06434 322 IPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGI----EDIDDLIKDIENAL 382 (384)
T ss_pred cceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHh
Confidence 233433322110 00000000000 11235567899999984 56667777776665
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=186.22 Aligned_cols=238 Identities=13% Similarity=0.136 Sum_probs=177.1
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
..+...+.++++..|+.||++ ...++|+|+|.++.+++.++ +++||+|++++.+|.|++.++.. .|
T Consensus 201 ~~p~G~I~eAq~~aA~~fgA~--~t~FlvNGST~gn~a~i~a~--------~~~gd~Vlv~RN~HKSv~~al~L----~g 266 (755)
T PRK15029 201 LDHTGAFGESEKYAARVFGAD--RSWSVVVGTSGSNRTIMQAC--------MTDNDVVVVDRNCHKSIEQGLIL----TG 266 (755)
T ss_pred CCCCcHHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHHh--------cCCCCEEEeecccHHHHHHHHHH----cC
Confidence 344567899999999999996 78889999999999999976 59999999999999999988755 59
Q ss_pred cEEEEEeCCCCCCChH--------HH-HHHHHHHHhcccc----CCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCC
Q 012991 156 GSVVEVQLPFPLASEE--------EI-INEFKKGIEKGKK----DGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVD 222 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~~--------~~-~~~l~~~i~~~~~----~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~ 222 (452)
+.++++.+.. +..+ .+ ++.+++++++.+. .+.+++++++++|++ .|...++++|+++|+++++
T Consensus 267 a~Pvyl~P~~--~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~- 342 (755)
T PRK15029 267 AKPVYMVPSR--NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSD- 342 (755)
T ss_pred CeEEEecccc--cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCC-
Confidence 9999997532 1111 12 6788888876431 124566999999876 7999999999999999999
Q ss_pred EEEEeccccc-----CCccc-c-c-----cccCcc-EEEEcCcccCcCCCCcEEEEEecC--ccccCCCCCceeccCCCC
Q 012991 223 QVFVDAAHAM-----GSIKI-D-V-----KEIGAD-FYVSNLHKWFFCPPSVAFLYCRKS--ILSSDMHHPVVSHEFGNG 287 (452)
Q Consensus 223 ~~ivD~a~~~-----g~~~~-~-~-----~~~~~d-~~~~s~~K~l~g~~G~G~l~~~~~--~~~~~l~~~~~~~~~~~~ 287 (452)
+++||+||+. ...+. . + ...|+| +++.|.||.+.+.+..+++.++.+ .+.. ..+..
T Consensus 343 ~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~----~r~~~----- 413 (755)
T PRK15029 343 RLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINF----SRFNQ----- 413 (755)
T ss_pred eEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCH----HHHHH-----
Confidence 8999999864 11221 1 1 115788 999999999999988888888655 2221 01000
Q ss_pred cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 288 LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
......+.+|+|..++++..|..++... .| +.+.++..+.+..+++.+.++.+
T Consensus 414 -~l~~~qSTSPSY~LmASLD~ar~~m~~~-~G-~~l~~~~i~~~~~~r~~l~~~~~ 466 (755)
T PRK15029 414 -AYMMHATTSPLYAICASNDVAVSMMDGN-SG-LSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_pred -HHHHHcCCCcHHHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHHHHHHHhccc
Confidence 0223345789999999999888888741 14 44556677778888888876644
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=169.78 Aligned_cols=312 Identities=18% Similarity=0.178 Sum_probs=209.1
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+....++++++++-|. +..+.+++|-.|+..++.++ +++||+|++++..|.+.+.-+..+..+
T Consensus 57 Y~R~~nPT~~~lE~~~a~LEg~---~~~~afsSGmaAI~~~~l~l--------l~~GD~vl~~~~~YG~t~~~~~~~l~~ 125 (396)
T COG0626 57 YSRTGNPTRDALEEALAELEGG---EDAFAFSSGMAAISTALLAL--------LKAGDHVLLPDDLYGGTYRLFEKILQK 125 (396)
T ss_pred cccCCCccHHHHHHHHHHhhCC---CcEEEecCcHHHHHHHHHHh--------cCCCCEEEecCCccchHHHHHHHHHHh
Confidence 4444466788899999999877 47788889999999988876 689999999999999999988888888
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++.+++. .+ .+.+++++. .++|++|+++.|+||+-.+.|+++|+++||++|+ +++||.+.+.+
T Consensus 126 ~gi~~~~~d~----~~----~~~~~~~~~-----~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~-~vvVDNTfatP 191 (396)
T COG0626 126 FGVEVTFVDP----GD----DEALEAAIK-----EPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGA-LVVVDNTFATP 191 (396)
T ss_pred cCeEEEEECC----CC----hHHHHHHhc-----ccCceEEEEeCCCCcccccccHHHHHHHHHhcCC-EEEEECCcccc
Confidence 9999999842 22 255666662 2589999999999999999999999999999999 89999998876
Q ss_pred CccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
... ..-..|+|+++.|.+|++ ++++ .|++..+++.+...+ +.. .....|.... + ...+..+
T Consensus 192 ~~q-~PL~~GaDIVvhSaTKyl-~GHsDvl~G~v~~~~~~~~~~~---~~~---------~~~~~G~~l~-p-~dA~l~l 255 (396)
T COG0626 192 VLQ-RPLELGADIVVHSATKYL-GGHSDVLGGVVLTPNEELYELL---FFA---------QRANTGAVLS-P-FDAWLLL 255 (396)
T ss_pred ccc-ChhhcCCCEEEEeccccc-cCCcceeeeEEecChHHHHHHH---HHH---------HHhhcCCCCC-H-HHHHHHH
Confidence 652 222348999999999975 4444 455555655554301 000 0000121111 0 0112222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
+-++ .+.--.++..+++..+.++|.+.+.++ |+.|. ...++++.|.+. .+....+
T Consensus 256 RGlk----TL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~------~~~~~~~ 325 (396)
T COG0626 256 RGLR----TLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELK------NEEAAKK 325 (396)
T ss_pred hccc----hHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeC------ChHHHHH
Confidence 2222 234446667888999999999887763 55542 026899999996 2245667
Q ss_pred HHHHHhhhcceEeeecccC-CCCCC----C-C-CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 376 LRGHLRVRFGVEVPIHYQA-PKDDG----Q-P-QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~-~~~~~----~-~-~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+.+.|. -+.+....+... .-.-. + . ..-.+.+.+..++.+|+|++ .||++.|++.|++.++
T Consensus 326 f~~~L~-l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVG----lEd~eDLi~Dl~~Al~ 393 (396)
T COG0626 326 FLDSLK-LFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVG----LEDVEDLIADLEQALA 393 (396)
T ss_pred HHHhCC-ccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHH
Confidence 777773 345554332111 00000 0 0 01112334677899999998 4666677777776664
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=165.57 Aligned_cols=316 Identities=15% Similarity=0.177 Sum_probs=212.7
Q ss_pred hHHHHHHHHHHHhHhC----CC---CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH
Q 012991 79 RKGILESRAAVKDLIN----AD---DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV 151 (452)
Q Consensus 79 ~~~~~~~~~~la~~~~----~~---~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a 151 (452)
.++....++++|+++. .+ +|+++++++|+|.|++++.-.| ..||+..+++.|-|++...-.++
T Consensus 120 y~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcL--------adpgdafLvPtPyY~gfdrdl~~-- 189 (471)
T KOG0256|consen 120 YHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCL--------ADPGDAFLVPTPYYPGFDRDLRW-- 189 (471)
T ss_pred ccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHh--------cCCCceeeecCCCCCccccccee--
Confidence 3456778888888874 11 5899999999999999998877 48999999999999998655543
Q ss_pred HhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEe
Q 012991 152 TRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVD 227 (452)
Q Consensus 152 ~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD 227 (452)
+.|++++.+... ..+..++ +++||+++.+.+..+.+.+.|++++|+||.|+.++-+ .+..++.++|+ -+|+|
T Consensus 190 -rTgveivpv~c~--Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kni-HvI~D 265 (471)
T KOG0256|consen 190 -RTGVEIVPVHCS--SSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNI-HVISD 265 (471)
T ss_pred -ccCceEEEEEee--cCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcce-EEEee
Confidence 468888877542 2334566 8999999988777788999999999999999999855 45677789999 69999
Q ss_pred cccccCCccc-----------ccc-ccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccc
Q 012991 228 AAHAMGSIKI-----------DVK-EIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESA 293 (452)
Q Consensus 228 ~a~~~g~~~~-----------~~~-~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 293 (452)
+.++...... +.. ..+-.-++.|.+|= +|.+| +|++|..++.+.. ....++.
T Consensus 266 EIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD-~GlpGfRvGviYS~ne~Vvs--aA~kmss----------- 331 (471)
T KOG0256|consen 266 EIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKD-FGLPGFRVGVIYSNNEDVVS--AATKMSS----------- 331 (471)
T ss_pred hhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccc-cCCCceEEEEEEecChHHHH--HHHHHhh-----------
Confidence 9876533210 110 11122467789995 88888 7899886655543 0111110
Q ss_pred cccccCccccccHHHHHH--HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChh
Q 012991 294 WIGTRDYSAQLVIPSAVT--FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGED 371 (452)
Q Consensus 294 ~~~~~~~~~~~~~~~al~--~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (452)
.+.-+...+.-+..-+. ++.+ +.+.+..+|++..-+++.++|+++ |+....... +.++|+.+..-+...+-.
T Consensus 332 -f~~vSs~tQ~~la~LLSD~~f~~--~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~A--GlF~wvDlr~lL~s~tfe 405 (471)
T KOG0256|consen 332 -FGLVSSQTQYLLASLLSDEEFTR--EYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNA--GLFCWVDLRKLLTSLTFE 405 (471)
T ss_pred -ccCCcHHHHHHHHHHhchHHHHH--HHHHHHHHHHHHHHHHHHhhHHhc-CCceeecCC--eeEEEEEhHHhcCcCChH
Confidence 12222222222222222 2222 146666777888888899999887 776554443 788888875433322223
Q ss_pred hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 372 DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 372 ~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
...++.+.+..+-++.+.++..+- ...+||+|+|+.. ..++.++-.+++|+..+..+
T Consensus 406 ~El~Lw~~i~~~vklnlSpG~s~~--------------C~EpGWFRvcFAn-~~~~t~~~am~Ri~~~~~~~ 462 (471)
T KOG0256|consen 406 GELELWERILDNVKLNLSPGSSCH--------------CHEPGWFRVCFAN-MSEETLEVAMRRLKQFLDSQ 462 (471)
T ss_pred HHHHHHHHHHHhhccccCCCCcce--------------ecCCCeEEEEecc-CCHHHHHHHHHHHHHHHHhh
Confidence 345677777665588876543320 3568999999985 23444665888888888744
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-18 Score=169.49 Aligned_cols=339 Identities=11% Similarity=0.089 Sum_probs=209.9
Q ss_pred CCCCeEEecc----CCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINN----GSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~----~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.+..++.+.. ...|...+.+.+++.+.+........ .+ ..+...++.++|+++++. +.++|++||++|+
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~---~~~~~~~la~~L~~~~~~---~~~~f~~SGseA~ 105 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGN-GY---TNEPVLRLAKKLVDATFA---DKVFFCNSGAEAN 105 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccC-cc---CCHHHHHHHHHHHhhCCC---CEEEEeCCcHHHH
Confidence 3445555433 34667788899999988765311111 11 234567889999998865 5899999999999
Q ss_pred HHHHHHhhcccccCCC-CCCCEEEEeCCcchhHHHHHHHHHHhc---------CcEEEEEeCCCCCCChHHHHHHHHHHH
Q 012991 112 AIVLQQIGRGFTEGRF-HRNDTVLMLHCAFQAVKKSIQAYVTRA---------GGSVVEVQLPFPLASEEEIINEFKKGI 181 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~---------g~~v~~~~~~~~~~~~~~~~~~l~~~i 181 (452)
..++..+ |.+....- ..+++|+..+..|++.......+.... ...+..+ +.++ ++.+++.+
T Consensus 106 e~Alk~a-r~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l 176 (397)
T TIGR03246 106 EAALKLA-RRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHA----PYND----LAAAKALI 176 (397)
T ss_pred HHHHHHH-HHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEe----CCCC----HHHHHHHh
Confidence 9999854 44421100 134578887777776543322211100 0112223 2222 68888888
Q ss_pred hccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLH 252 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~ 252 (452)
.+++++|+++.++++.|...+ +++|.++|++||+ ++|+|+++. +|-.. .......+|+++ ++
T Consensus 177 ------~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t--~~ 247 (397)
T TIGR03246 177 ------SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNA-LLIFDEVQTGVGRTGELYAYMHYGVTPDILT--SA 247 (397)
T ss_pred ------ccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhhcCCccccchhhhhcCCCCCEEE--ee
Confidence 467999999988888886642 8899999999999 899999983 22111 111223578775 46
Q ss_pred ccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 253 KWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 253 K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
|.+.|+.-+|+++.++++.+. + .... ...++ ..+.....+..++++.+. .+.+.++++++.+
T Consensus 248 K~lggG~pigav~~~~~i~~~-~-~~~~---------~~~t~--~~~p~~~aaa~a~l~~~~-----~~~l~~~~~~~~~ 309 (397)
T TIGR03246 248 KALGGGFPIGAMLTTTEIAAH-L-KVGT---------HGTTY--GGNPLACAVAGKVLDLVN-----TPELLAGVKQRHD 309 (397)
T ss_pred hhhhCCcceeEEEEcHHHHHh-c-cCCC---------cCCCC--CCCHHHHHHHHHHHHHHh-----hccHHHHHHHHHH
Confidence 987544447888888887664 2 1110 00111 112223333444555543 2456888899999
Q ss_pred HHHHHHHHHcC-CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAWG-TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 333 ~l~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
++.+.|.++.. ..+.......+.++.+.+.+. .......+++.|.++ |+.+.. .
T Consensus 310 ~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~----~~~~~~~~~~~l~~~-Gv~~~~--------------------~ 364 (397)
T TIGR03246 310 LFVDGLEKINARYNVFSEIRGKGLLIGAVLTEA----YQGKAKQFVNAAAEE-GVIALI--------------------A 364 (397)
T ss_pred HHHHHHHHHHhcCCCeEeeecCceEEEEEEcCc----hhhHHHHHHHHHHHC-CeEEee--------------------c
Confidence 99999987631 222222222244555544210 012456788888765 998742 1
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+++|++++..+|++||++++++|++++..
T Consensus 365 g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 365 GPNVVRFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999999889999999999999998854
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=177.62 Aligned_cols=353 Identities=15% Similarity=0.104 Sum_probs=202.2
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcC--Cch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcE---EEecChhH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQ--PDD-FYF--NSLRKGILESRAAVKDLINADDVGEI---SLVDNATT 109 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~--~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i---~~t~g~t~ 109 (452)
+..+.|- ++-...++.|++++...+..-... |.. +|. ...+++..-+.++++++|+++ ++.. +-.-||+.
T Consensus 20 ~~~l~Li-aSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~-~~~w~anvqp~SGs~ 97 (399)
T PF00464_consen 20 RSTLNLI-ASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAE-PKEWYANVQPHSGSQ 97 (399)
T ss_dssp HHSEE-C-TT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-S-TTTEEEE---SSHHH
T ss_pred hcCcccc-CcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCC-cccceEEeecCCchH
Confidence 4566776 445566667888887665443221 221 221 334566777899999999996 4444 34579999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHH---HHHHH--H-HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVK---KSIQA--Y-VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~---~~~~~--~-a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+..++.+| ++|||+|+..+..+.++. ..... + +.....++..++++ . +.+.+ ++++++.++
T Consensus 98 An~av~~aL--------l~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d--~-~~~~ID~d~l~~~a~ 166 (399)
T PF00464_consen 98 ANLAVYMAL--------LKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVD--P-DTGLIDYDELEKLAK 166 (399)
T ss_dssp HHHHHHHHH--------T-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB---T-TTSSB-HHHHHHHHH
T ss_pred HHHHHHHHH--------HhhcCcEEecChhhcccccccccccccccccccceEEEEeeeee--c-CCCeECHHHHHHHHh
Confidence 999999988 699999998766554331 11111 0 01113466666442 1 23444 899999887
Q ss_pred ccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcC
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g 257 (452)
+ .+|++|++....+ -..+|++++.++|++.|+ ++++|.+|-.|.+ +-.+. .+|++++|.||+|.|
T Consensus 167 ~-----~kPklIi~G~S~y--~~~~d~~~~reIad~vga-~l~~D~sH~~GLIa~g~~~~P~~--~ADvvt~sThKtl~G 236 (399)
T PF00464_consen 167 E-----HKPKLIICGASSY--PRPIDFKRFREIADEVGA-YLMADISHIAGLIAGGLFPNPFP--YADVVTGSTHKTLRG 236 (399)
T ss_dssp H-----H--SEEEEE-SST--SS---HHHHHHHHHHTT--EEEEE-TTTHHHHHTTSS--GCC--TSSEEEEESSGGG-S
T ss_pred h-----cCCCEEEECchhc--cCccCHHHHHHHHHhcCc-EEEecccccccceehheecCccc--cceEEEeeccccccc
Confidence 4 6899999975543 457899999999999999 8999999976543 33333 389999999999999
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCccccccc---ccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAW---IGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|.| |++++++...............+... .-...+ .|.+....+.++..++..+.+. .++.+.+++.++++.|
T Consensus 237 Prg-giI~~~~~~~~~~~~~~~~~~~l~~~-I~~avfP~~qg~~h~~~iaalAval~ea~~~--~fk~Ya~qVv~NAk~L 312 (399)
T PF00464_consen 237 PRG-GIILTNKGSKNVDKKGKEIDEELAEK-IDSAVFPGLQGGPHMHRIAALAVALKEALSP--EFKEYAKQVVKNAKAL 312 (399)
T ss_dssp SS--EEEEES-SEEEE-TTS-EEEHHHHHH-HHHHHTTTT-SS--HHHHHHHHHHHHHHTSH--HHHHHHHHHHHHHHHH
T ss_pred cCc-eEEEEcCCccccCCcccccHHHHHHH-hccccCCCcccCcchhHHHHHHHHHhcccCH--HHHHHHHHHHHHHHHH
Confidence 998 99999832222100000000000000 000011 1445555666777677665432 5688999999999999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.+.|.+. |+.+... ....+++++.+.. .+.+..+..+.|.+ .||.+.....+...+ ...+.
T Consensus 313 a~~L~~~-G~~v~~g-gTd~H~vlvd~~~-----~~~~g~~a~~~Le~-~gI~vnkn~iP~d~~-----------~~~~s 373 (399)
T PF00464_consen 313 AEALQER-GFKVVTG-GTDNHQVLVDLRS-----FGIDGKEAEKALEE-AGIIVNKNTIPGDRS-----------PFVPS 373 (399)
T ss_dssp HHHHHHT-T-EEGGG-S-SSSEEEEEGGG-----GTS-HHHHHHHHHH-TTEE-EEE--TTTST-----------TTT-S
T ss_pred HHHHhhC-CcEEEEC-CCCCCeEEEEecc-----cccchHHHHHHHHh-cCeeecccccCCCCC-----------CCCCC
Confidence 9999987 8887653 2347788888741 24577778788854 699986533332111 23467
Q ss_pred eEEecccccC----CHHHHHHHHHHH
Q 012991 415 YARISHQVYN----TLEDYEKFRDAV 436 (452)
Q Consensus 415 ~iRis~~~~~----t~~di~~l~~~l 436 (452)
.|||+....+ .++|++.+.+.|
T Consensus 374 GlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 374 GLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp EEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred EEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 8999987654 367777776654
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-20 Score=162.55 Aligned_cols=333 Identities=14% Similarity=0.131 Sum_probs=226.2
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHh
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI 118 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l 118 (452)
..+.|-......+..+.+++|.+... ++.. |+.++...++++.+|+++|- +..+|++|||.++.++++.-
T Consensus 22 ~~vDLRSDTvT~PTdeMr~am~eA~v-----gDdV--yGeD~tt~rLE~~vA~l~GK---EAgLFv~SGTmgNllaIm~H 91 (384)
T KOG1368|consen 22 RSVDLRSDTVTVPTDEMRRAMAEASV-----GDDV--YGEDPTTNRLEQRVAELFGK---EAGLFVPSGTMGNLLAIMVH 91 (384)
T ss_pred eccccccccccCChHHHHHHHhhccc-----Cccc--ccCCccHHHHHHHHHHHhCc---cceeeecccccccHHHHHHH
Confidence 34455555555555556666655432 2222 34456678999999999998 47799999999999999876
Q ss_pred hcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc--cCCCceEEEE
Q 012991 119 GRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK--KDGKMIRLAI 195 (452)
Q Consensus 119 ~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~--~~~~~~~lv~ 195 (452)
+ .++|.+|++.+.+|.-.+..-.. +.-.|+.++.+ ...+++.+ ++++|++++-.. -+.+-|++|.
T Consensus 92 c-------~~rg~eii~gd~~HI~~~E~gg~-s~l~gv~~~tv----~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIc 159 (384)
T KOG1368|consen 92 C-------HQRGSEIIVGDRAHIHRYEQGGI-SQLAGVHVRTV----KNENDGTMDLEDIEAAIRVPKGDCHMPPTKLIC 159 (384)
T ss_pred h-------cCCCceEEeccchheeehhccCh-hhhccceeEee----eeCCCCeeeHHHHHHhhcCCCCCccCCCceEEE
Confidence 3 46899999999988765544332 45567888888 44556677 999999997432 1224689999
Q ss_pred EeccCCCCc-ccccHHH---HHHHHHHcCCCEEEEeccccc---CCccccccc--cCccEEEEcCcccCcCCCCcEEEEE
Q 012991 196 IDHITSMPC-VVIPVRK---LVKICRDEGVDQVFVDAAHAM---GSIKIDVKE--IGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 196 ~~~~~n~tG-~~~~l~~---i~~l~~~~~~~~~ivD~a~~~---g~~~~~~~~--~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
+++.++.+| .++|+++ |.++|+++|+ .+++|||--+ -...+.+++ -.+|.++..++|.+++|.| .+++.
T Consensus 160 lENT~~~~Gg~vlPle~~~~v~~lak~~gl-kLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVG-SViVG 237 (384)
T KOG1368|consen 160 LENTHNNCGGKVLPLEELDRVKALAKRHGL-KLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVG-SVIVG 237 (384)
T ss_pred eeccccccCceEeeHHHHHHHHHHHhccCC-eeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcc-cEEEc
Confidence 999998887 8899775 5778999999 7999997321 111222222 2478999999999999997 78889
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
+++++.+ ...+...+|+++. + + .+++. +++-.+.+ .+. ..++-.+++..+.+.+.+.+++++
T Consensus 238 ~k~FI~k---A~~~RKalGGGmR-Q--------s-GvLaa-aaLval~~---~~~-~L~~dHk~A~~lAe~~~~~~~i~v 299 (384)
T KOG1368|consen 238 SKDFIDK---ARHFRKALGGGMR-Q--------S-GVLAA-AALVALDE---NVP-LLRADHKRAKELAEYINTPEEIRV 299 (384)
T ss_pred cHHHHHH---HHHHHHHhcCchh-H--------H-HHHHH-HHHHHhhc---chH-HHHHHHHHHHHHHHHhccccceee
Confidence 9999986 3444444555541 1 0 11111 12222222 233 344456777778888877655766
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
..+... .+++.+.+.. ...++.++++.+.+ +||.+-.+ ....+|+.+++-.|.
T Consensus 300 ~v~a~e-tNiv~~~l~q-----~~~~~~~l~~~~~k-~gi~lm~~--------------------~s~r~Rivlh~Qvt~ 352 (384)
T KOG1368|consen 300 EVPAVE-TNIVNMVLCQ-----ARLTAEELCKFLEK-NGILLMGG--------------------ASRRIRIVLHHQVTD 352 (384)
T ss_pred ecchhh-cceeeeeccc-----ccCCHHHHHHHHHH-CCeEEeec--------------------cccceEEEEEEecCH
Confidence 555221 5566655531 36789999999954 69987421 123599999998999
Q ss_pred HHHHHHHHHHHHHH
Q 012991 427 EDYEKFRDAVILLV 440 (452)
Q Consensus 427 ~di~~l~~~l~~~~ 440 (452)
++++.+...+++.+
T Consensus 353 ~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 353 EDVEYVKSVLSKKF 366 (384)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999995444
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-18 Score=171.34 Aligned_cols=333 Identities=14% Similarity=0.163 Sum_probs=208.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccC--
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG-- 125 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~-- 125 (452)
.|...+.|.+++.+.+.... ..+.. -..+...++.+.++++++. +.++|+++|++|+..++. +++.++..
T Consensus 89 ~Gh~~p~v~~ai~~ql~~~~-~~~~~---~~~~~~~~la~~L~~~~~~---~~~~f~~SGseA~e~Alk-lAr~~~~~~~ 160 (474)
T PLN02624 89 QGHCHPKIIKALTEQAEKLT-LSSRA---FYNDKFPEFAEYLTSMFGY---DMVLPMNTGAEGVETAIK-LARKWGYEKK 160 (474)
T ss_pred CCCCCHHHHHHHHHHHHhcC-Ccccc---cCCHHHHHHHHHHHhhcCC---CeEEEeCChHHHHHHHHH-HHHHHHHhhc
Confidence 35567779999999887642 11111 1245567788899998865 589999999999999998 55554210
Q ss_pred CCCCC-CEEEEeCCcchhHHHHHHHHHHhc----C-----cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 126 RFHRN-DTVLMLHCAFQAVKKSIQAYVTRA----G-----GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 126 ~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~----g-----~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
...++ ..|+.....|++.......+.... + ..+..+ +.++ .+.+++.++.. ..++++|+
T Consensus 161 g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l~~~---~~~iaaii 229 (474)
T PLN02624 161 GIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKV----DFGD----LDALEKIFEED---GDRIAAFL 229 (474)
T ss_pred CCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEe----CCCC----HHHHHHHHHhC---CCCEEEEE
Confidence 00123 357777777777533322111000 0 011222 2222 57777777532 46799999
Q ss_pred EeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC-CCcEEEE
Q 012991 196 IDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP-PSVAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~ 265 (452)
++.+++++|.+.| +++|.++|++||+ ++|+|++|+ +|.. ..+.....+|++++| |.++++ ..+|.++
T Consensus 230 iEpv~~~~G~v~p~~~~L~~l~~lc~~~gi-llI~DEv~tG~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~ 306 (474)
T PLN02624 230 FEPIQGEAGVVIPPDGYLKAVRELCSKHNV-LMIADEIQTGLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVSAVL 306 (474)
T ss_pred ECCccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcceeee
Confidence 9999999999988 9999999999999 899999987 3321 223334467888875 986654 3478888
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GT 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~ 344 (452)
.++++... + .+.. . .. +...+.....+..++++.+.+ +.+.++..++.+++++.|.++. .+
T Consensus 307 ~~~~i~~~-~-~~~~---~------~~--T~~g~pl~~aaa~aaLe~l~~-----~~l~~~~~~~~~~l~~~L~~l~~~~ 368 (474)
T PLN02624 307 ADKDVMLC-I-KPGE---H------GS--TFGGNPLASAVAMAALQVVQD-----EKLAERSAKLGQELRDQLQKIQKQF 368 (474)
T ss_pred ecHHHHhH-h-ccCC---c------CC--CCCCCHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHhC
Confidence 87766654 1 1110 0 00 011233344445555655543 2356677778888888887652 12
Q ss_pred C-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 345 S-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 345 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
. ........+.++.+.+.... .....+.++++.|.+ .||.+... ..+++||+++..
T Consensus 369 ~~~i~~vrg~G~~~~i~l~~~~--~~~~~a~~~~~~L~e-~GV~v~p~--------------------~~~~lR~~p~l~ 425 (474)
T PLN02624 369 PKLIKEVRGRGLLNAVVLNSPK--LGPVSAYDVCLKLKE-RGLLAKPT--------------------HDTIIRLAPPLS 425 (474)
T ss_pred CCceEEEEeeEEEEEEEecCCC--cChHHHHHHHHHHHh-CCeEEecC--------------------CCCEEEEECCcc
Confidence 1 11111123455555553110 002345678888866 59998521 246899999888
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 012991 424 NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~~ 443 (452)
+|++||+.++++|+++++..
T Consensus 426 ~t~e~id~~l~~L~~~l~~~ 445 (474)
T PLN02624 426 ISEDELQECSKALSDVLEHD 445 (474)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998654
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-18 Score=168.08 Aligned_cols=339 Identities=12% Similarity=0.145 Sum_probs=214.9
Q ss_pred CCCCeEEeccCC----CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNGS----FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~~----~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.+..++.+..+. .|...+.+.+++.+.+.... ..+. ....+...++.+.++++++. +.++++++|++|+
T Consensus 35 ~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~~~l~~~l~~~~~~---~~~~~~~SGs~A~ 107 (401)
T TIGR01885 35 EGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLT-LSSR---AFYNDVFGEFAEYVTKLFGY---DKVLPMNTGAEAV 107 (401)
T ss_pred CCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhcc-cccc---ccCCHHHHHHHHHHHhhcCC---CEEEEeCccHHHH
Confidence 345555554432 33457779999988876532 1111 11356678899999999875 5889999999999
Q ss_pred HHHHHHhhcccccC---CCCCCCEEEEeCCcchhH-HHHHHHHHHh------cC---cEEEEEeCCCCCCChHHHHHHHH
Q 012991 112 AIVLQQIGRGFTEG---RFHRNDTVLMLHCAFQAV-KKSIQAYVTR------AG---GSVVEVQLPFPLASEEEIINEFK 178 (452)
Q Consensus 112 ~~~~~~l~~~~~~~---~~~~g~~Vl~~~~~~~s~-~~~~~~~a~~------~g---~~v~~~~~~~~~~~~~~~~~~l~ 178 (452)
..++..+. .+... ....++.|+.....|++. ..++.. ... .+ ..+..+ +..+ ++.++
T Consensus 108 e~ai~~a~-~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~d----~~~le 177 (401)
T TIGR01885 108 ETAIKLAR-KWGYKVKGIPENQAIIVSAKGNFHGRTLGAISM-STDPDSRTNFGPYVPGFKKI----PYNN----LEALE 177 (401)
T ss_pred HHHHHHHH-HHhhhhcCCCCCCCEEEEECCCcCcccHHHHhC-cCCcccccccCCCCCCceEe----CCCC----HHHHH
Confidence 99998652 22100 012346788888887753 333322 110 11 112223 2222 57788
Q ss_pred HHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc--c--ccccccCccEEEE
Q 012991 179 KGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI--K--IDVKEIGADFYVS 249 (452)
Q Consensus 179 ~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~--~--~~~~~~~~d~~~~ 249 (452)
+.+++. ..++.+|+++.+.+++|.+.| +++|.++|++||+ ++|+|++|. +|.. . .+...+.+|++++
T Consensus 178 ~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~-lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~ 253 (401)
T TIGR01885 178 EALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNV-LLIADEIQTGLGRTGKLLCVDHENVKPDIVLL 253 (401)
T ss_pred HHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCccchhhHHhhcCCCCCEEEe
Confidence 888643 357889999999999999987 8999999999999 899999974 3211 1 2223446888876
Q ss_pred cCcccCcCC-CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 250 NLHKWFFCP-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 250 s~~K~l~g~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
| |.+.++ ..+|+++.++++++. +.... . ...+ +.+.....+..++++.+.+ +.+.++.+
T Consensus 254 g--K~l~~g~~~ig~v~~~~~i~~~-~~~~~----~------~~t~--~~~p~~~~aa~a~L~~i~~-----~~l~~~~~ 313 (401)
T TIGR01885 254 G--KALSGGVYPVSAVLADDDVMLT-IKPGE----H------GSTY--GGNPLACAVAVAALEVLEE-----EKLAENAE 313 (401)
T ss_pred e--ccccCCCCCcEEEEEcHHHHhh-ccCCC----C------CCCC--CCCHHHHHHHHHHHHHHHh-----ccHHHHHH
Confidence 5 987543 237888888777764 21111 0 0111 1222334444556666553 24567788
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++.+++++.|.++ +..++......+.+..+.++.. ..+.+..++.+.|.++ ||.+..
T Consensus 314 ~~~~~~~~~L~~l-~~~~~~~~~g~g~~~~i~~~~~---~~~~~~~~l~~~l~~~-Gv~v~~------------------ 370 (401)
T TIGR01885 314 KLGEIFRDQLKKL-PKPIITEVRGRGLLNAIVIDES---KTGRTAWDLCLKLKEK-GLLAKP------------------ 370 (401)
T ss_pred HHHHHHHHHHHhc-cCCceeEEeecCeeEEEEeccC---cchhHHHHHHHHHHhC-CEEEEe------------------
Confidence 8899999999887 3333222222355655555421 0013567899999764 999842
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..++.+|++++...+++||++++++|++++
T Consensus 371 --~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 371 --THGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred --cCCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 123689999998899999999999999876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=156.50 Aligned_cols=165 Identities=21% Similarity=0.213 Sum_probs=131.1
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEV 161 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~ 161 (452)
++++++.++++++.+ .+++++++|+|+|+.+++.++ .+++++|+++++.|++... ..+...|.+++.+
T Consensus 2 ~~~~~~~l~~~~~~~-~~~~~~~~~~t~a~~~~~~~~--------~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v 69 (170)
T cd01494 2 LEELEEKLARLLQPG-NDKAVFVPSGTGANEAALLAL--------LGPGDEVIVDANGHGSRYW---VAAELAGAKPVPV 69 (170)
T ss_pred HHHHHHHHHHHcCCC-CCcEEEeCCcHHHHHHHHHHh--------CCCCCEEEEeecccceehh---hHHHhcCCEEEEe
Confidence 468899999999753 578999999999999999987 3568999999999998763 1246679999998
Q ss_pred eCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---
Q 012991 162 QLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI--- 237 (452)
Q Consensus 162 ~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~--- 237 (452)
+.+. +..... .+.+++... +.+++++++++++|++|...|+++|+++|+++|+ ++|+|++++.+....
T Consensus 70 ~~~~--~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~-~li~D~a~~~~~~~~~~~ 141 (170)
T cd01494 70 PVDD--AGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGI-LLLVDAASAGGASPAPGV 141 (170)
T ss_pred ccCC--CCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCC-EEEEeccccccccccccc
Confidence 6421 111111 224444332 5789999999999999999999999999999999 799999999877765
Q ss_pred cccccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 238 DVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 238 ~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
+....++|+++.|+||++++ +|+|++++|
T Consensus 142 ~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 142 LIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred ccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 45566899999999998666 778999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-18 Score=167.98 Aligned_cols=339 Identities=12% Similarity=0.132 Sum_probs=213.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.|.+++.+.+...... . .+...+...++.++|++++..+ .+.++|++|||+|+..++. ++|.++..
T Consensus 95 ~lGH~~p~v~~Ai~~ql~~l~~~-~---~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~Alk-lAr~~t~~- 167 (459)
T PRK11522 95 NVGHRNPVVVSAVQNQLAKQPLH-S---QELLDPLRAMLAKTLAALTPGK-LKYSFFCNSGTESVEAALK-LAKAYQSP- 167 (459)
T ss_pred hcCCCCHHHHHHHHHHHhhCccc-c---cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCchHHHHHHHH-HHHHHhcc-
Confidence 35677888999999988754211 1 1223455677888888887643 4689999999999999998 55555310
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCC-----CCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLP-----FPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITS 201 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n 201 (452)
+.+.+|+....+|++.......+......+..+.+.. .|..+ .+.+++.+++......++.+|+++....
T Consensus 168 -~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~iAavIvEpv~g 242 (459)
T PRK11522 168 -RGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGN----IEAMRTALSECKKTGDDVAAVILEPIQG 242 (459)
T ss_pred -CCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCC----HHHHHHHHHHhhccCCcEEEEEEecccC
Confidence 1245788888888886544322111000000000000 01111 4566666653222246789999999999
Q ss_pred CCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEEEEecCcc
Q 012991 202 MPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFLYCRKSIL 271 (452)
Q Consensus 202 ~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~~~~~~~ 271 (452)
..|.+.| ++++.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.++|+ ..+|.+++++++.
T Consensus 243 ~~G~~~pp~~yl~~lr~lc~~~g~-llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggG~~Pigav~~~~~i~ 319 (459)
T PRK11522 243 EGGVILPPEGYLTAVRKLCDEFGA-LLILDEVQTGMGRTGKMFACEHENVQPDILCLA--KALGGGVMPIGATIATEEVF 319 (459)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCC-EEEeccceecCCccchhhhhhccCCCCCEEEec--hhhhCCCccceeEEEcHHHH
Confidence 9999887 8999999999999 999999984 33221 12223358988665 988765 2478888887766
Q ss_pred ccCCC-CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CCC-cCC
Q 012991 272 SSDMH-HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GTS-LGS 348 (452)
Q Consensus 272 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~~-~~~ 348 (452)
+. +. .++. ...++.| +.....+..++++.+.+ +.+.++++++.++|.+.|.++. ... ++.
T Consensus 320 ~~-~~~~~~~---------~~~T~~g--np~~~Aaala~L~~i~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~ 382 (459)
T PRK11522 320 SV-LFDNPFL---------HTTTFGG--NPLACAAALATINVLLE-----QNLPAQAEQKGDYLLDGFRQLAREYPDLVQ 382 (459)
T ss_pred HH-hccCCcc---------cCCCCCC--CHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 54 11 1110 0001111 22233334445555553 3567889999999999998763 222 222
Q ss_pred CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHH
Q 012991 349 PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~d 428 (452)
.....+.++.+.+. +......+.+.|.++ ||.+.... ...+.+|++++...|++|
T Consensus 383 ~VrG~Gl~~giel~------~~~~~~~i~~~l~~~-Gvl~~~~~------------------~~~~~lr~~Ppl~~t~~~ 437 (459)
T PRK11522 383 EARGKGMLMAIEFV------DNEIGYNFASEMFRQ-RVLVAGTL------------------NNAKTIRIEPPLTLTIEQ 437 (459)
T ss_pred eEEeceeEEEEEec------CchHHHHHHHHHHHC-CeEEEecC------------------CCCCEEEEECCccCCHHH
Confidence 22234667777664 122356788888774 99985221 124689999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 012991 429 YEKFRDAVILLVEE 442 (452)
Q Consensus 429 i~~l~~~l~~~~~~ 442 (452)
|++++++|.++++.
T Consensus 438 id~~l~~l~~~l~~ 451 (459)
T PRK11522 438 CEQVLKAARKALAA 451 (459)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999865
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-18 Score=166.44 Aligned_cols=324 Identities=13% Similarity=0.090 Sum_probs=204.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+......... ...+...++.++++++++. +.++|++||++|+..++... |++....
T Consensus 52 ~lGh~~p~v~~A~~~~~~~~~~~~~~----~~~~~~~~la~~l~~~~~~---~~v~~~~sGseA~e~Alk~a-r~~~~~~ 123 (406)
T PRK12381 52 ALGHAHPALREALNEQASKFWHTGNG----YTNEPVLRLAKKLIDATFA---DRVFFCNSGAEANEAALKLA-RKYAHDR 123 (406)
T ss_pred cCCCCCHHHHHHHHHHHhhcccccCc----cCCHHHHHHHHHHHhhCCC---CeEEEcCCcHHHHHHHHHHH-HHHHhhc
Confidence 46677778999999987653111111 1234457788999998754 59999999999999999854 4442111
Q ss_pred C-CCCCEEEEeCCcchhHHHHHHHHHHhcCcE------------EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 127 F-HRNDTVLMLHCAFQAVKKSIQAYVTRAGGS------------VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 127 ~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~------------v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
. ..+.+|+..+..|++.......+ .+.. +..+ +..+ .+.+++.+ .+++++
T Consensus 124 ~~~~r~~ii~~~~~yHG~t~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l------~~~~aa 186 (406)
T PRK12381 124 YGSHKSGIVAFKNAFHGRTLFTVSA---GGQPKYSQDFAPLPPDIRHA----AYND----LNSASALI------DDQTCA 186 (406)
T ss_pred CCCCCCeEEEECCCcCCcchhHHhh---cCCcccccCCCCCCCCeeEe----CCCC----HHHHHHhc------cCCeeE
Confidence 1 24568888888888865433222 1211 1111 1111 67888888 467889
Q ss_pred EEEeccCCCCcccc-----cHHHHHHHHHHcCCCEEEEecccc-cCCcc--c--cccccCccEEEEcCcccCcCCCCcEE
Q 012991 194 AIIDHITSMPCVVI-----PVRKLVKICRDEGVDQVFVDAAHA-MGSIK--I--DVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 194 v~~~~~~n~tG~~~-----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~--~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
|+++. .+++|-+. .+++|.++|++||+ ++|+|+++. +|... + ......+|++ +++|.+.++.-+|+
T Consensus 187 viiEP-v~~~gg~~~~~~~~l~~l~~l~~~~~~-llI~DEv~tG~gr~G~~~~~~~~~v~pDi~--t~sK~l~gG~~ig~ 262 (406)
T PRK12381 187 VIVEP-IQGEGGVIPADKAFLQGLRELCDRHNA-LLIFDEVQTGVGRTGELYAYMHYGVTPDVL--TTAKALGGGFPIGA 262 (406)
T ss_pred EEEeC-CcCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEcchhhCCCCCcchhhhHhhCCCCCEE--EehhhhhCCCceEE
Confidence 99874 45555432 37799999999999 899999984 32221 1 1222357765 55698765444899
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW- 342 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~- 342 (452)
++.++++.+. + .... ... +...+.....+..++++.+.+ +.++++++++.+++.+.|.++.
T Consensus 263 ~~~~~~~~~~-~-~~~~---------~~~--t~~~~pl~~aaa~a~l~~l~~-----~~~~~~~~~~~~~l~~~L~~l~~ 324 (406)
T PRK12381 263 MLTTEKCASV-M-TVGT---------HGT--TYGGNPLASAVAGKVLELINT-----PEMLNGVKQRHDWFVERLNTINA 324 (406)
T ss_pred EEEcHHHHhh-c-CCCC---------CCC--CCCCCHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887765 2 1110 000 012233334444455655542 3568888899999999998762
Q ss_pred CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 343 GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
...+.......+.++++.++.. .......+.+.|.++ ||.+.. ..++.+|++++.
T Consensus 325 ~~~~~~~vrg~Gl~~~~~l~~~----~~~~~~~~~~~l~~~-Gv~v~~--------------------~g~~~lRl~p~~ 379 (406)
T PRK12381 325 RYGLFSEIRGLGLLIGCVLNAE----YAGKAKQISQEAAKA-GVMVLI--------------------AGPNVVRFAPAL 379 (406)
T ss_pred hCCCEEEEecCeEEEEEEecCc----hhhHHHHHHHHHHHC-CcEEee--------------------CCCCEEEEeCCc
Confidence 2222222223356667766420 012456788888764 999842 113689999998
Q ss_pred cCCHHHHHHHHHHHHHHHhc
Q 012991 423 YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~~~ 442 (452)
..|++||++++++|++++++
T Consensus 380 ~~t~~~i~~~~~~l~~~l~~ 399 (406)
T PRK12381 380 NISEEEITTGLDRFARACER 399 (406)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999998864
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=164.64 Aligned_cols=331 Identities=10% Similarity=0.106 Sum_probs=197.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... .+.. ....+...++.+.+.+..+ .+.++|++||++|+..++..+ +.+.. .
T Consensus 49 ~lGh~~p~v~~a~~~q~~~~~-~~~~---~~~~~~~~~la~~l~~~~~---~~~v~f~~SGseA~e~Aik~a-r~~~~-~ 119 (395)
T PRK03715 49 CLGHCNPGMVEALAAQAEKLI-NPSP---AFYNEPMAKLAGLLTQHSC---FDKVFFANSGAEANEGAIKLA-RKWGR-K 119 (395)
T ss_pred cCCCCCHHHHHHHHHHHHhcc-cccc---cccCHHHHHHHHHHhhccC---CCEEEEeCCcHHHHHHHHHHH-HHHhh-c
Confidence 456667779999998876532 1111 1123344555555555432 358999999999999999865 33321 1
Q ss_pred CCC-CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCC-hHHHHHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 127 FHR-NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLAS-EEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 127 ~~~-g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
.++ .++|+..+..||+.......+......+....+....... .....+.+++.+ .+++++|+++..++..|
T Consensus 120 ~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l------~~~~aavi~Epv~~~gG 193 (395)
T PRK03715 120 HKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLI------TDKTVAVMLEPVQGEGG 193 (395)
T ss_pred cCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHc------CCCceEEEEeCCcCCCC
Confidence 122 3578888777766443332221111111111111000000 001267888888 45789999999999999
Q ss_pred cccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 205 VVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 205 ~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
.+.| +++|.++|++||+ ++|+|++++ +|-.. .+.....+|+++++ |.+.++..+|.+++++++...
T Consensus 194 ~~~~~~~~l~~l~~l~~~~~~-llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~~i~~~-- 268 (395)
T PRK03715 194 VIPATREFMQQLRALTKQHGL-LLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLG--KGIGGGVPLAALLAKAEVAVF-- 268 (395)
T ss_pred CccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCCCcchhhHhhcCCCCceeeeh--hhhhCCcceEEEEEccccccc--
Confidence 9877 9999999999999 899999986 22221 12223358987765 988775557888888777531
Q ss_pred CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCCccccc
Q 012991 276 HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSLGSPPEICA 354 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~ 354 (452)
.... ...++.+ +.....+..++++.+.+ +.+.++.+++.+++.+.|.++.. ..+ ......+
T Consensus 269 ~~~~----------~~~T~~g--~pl~~aaala~L~~l~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~i-~~vrG~G 330 (395)
T PRK03715 269 EAGD----------QGGTYNG--NPLMTAVGVAVISQLLA-----PGFLEGVRARGEYLKEKLLELSEERGL-EGERGEG 330 (395)
T ss_pred cCCC----------cCCCCCC--CHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHhhcCCc-CeEEcce
Confidence 1110 0111112 22233334445555542 45688888999999998876521 112 1122336
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhh--hcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRV--RFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l 432 (452)
.++.+.+.+ . ....+.+.+.+ +.||.+.. ..++.+|++++...|++||+.+
T Consensus 331 lm~~i~l~~------~-~~~~~~~~~~~~~~~Gi~~~~--------------------~~~~~lR~~p~l~~t~~ei~~~ 383 (395)
T PRK03715 331 LLRALLLGK------D-IGPQIVEKARDMQPDGLLLNA--------------------PRPNLLRFMPALNVTTEEIDQM 383 (395)
T ss_pred eEEEEEecC------c-hHHHHHHHHHhccCCCEEEee--------------------cCCCEEEEeCCcccCHHHHHHH
Confidence 666666641 1 22334433322 12988742 1235899999999999999999
Q ss_pred HHHHHHHHhc
Q 012991 433 RDAVILLVEE 442 (452)
Q Consensus 433 ~~~l~~~~~~ 442 (452)
+++|++.++.
T Consensus 384 ~~~l~~~l~~ 393 (395)
T PRK03715 384 IAMLRSVLDK 393 (395)
T ss_pred HHHHHHHHHh
Confidence 9999998863
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-17 Score=164.14 Aligned_cols=338 Identities=12% Similarity=0.117 Sum_probs=207.3
Q ss_pred CCCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.++.++.+..+ ..|..++.+.+++.+.+...... ...+ ..+...++.+.++++.+. +.++|++||++|+
T Consensus 38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~---~~~~~~~l~~~l~~~~~~---~~~~~~~sGseA~ 110 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHI-SNVF---TNEPALRLAKKLIDATFA---ERVFFANSGAEAN 110 (403)
T ss_pred CCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcc-cCcc---CCHHHHHHHHHHHhhCCC---CEEEEeCchHHHH
Confidence 34455555433 46778888999999887653111 1111 123346888889888754 5999999999999
Q ss_pred HHHHHHhhcccccCCC-CCCCEEEEeCCcchhHHHHHHHHHH----hcC-----cEEEEEeCCCCCCChHHHHHHHHHHH
Q 012991 112 AIVLQQIGRGFTEGRF-HRNDTVLMLHCAFQAVKKSIQAYVT----RAG-----GSVVEVQLPFPLASEEEIINEFKKGI 181 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~-~~g~~Vl~~~~~~~s~~~~~~~~a~----~~g-----~~v~~~~~~~~~~~~~~~~~~l~~~i 181 (452)
..++.. ++.+..... ...++|+..+..|++.......+.. ..+ .++..+ +.++ .+.+++.+
T Consensus 111 e~a~kl-ar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l 181 (403)
T PRK05093 111 EAAFKL-ARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHV----PFND----LAAVKAVI 181 (403)
T ss_pred HHHHHH-HHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEe----CCCC----HHHHHHHh
Confidence 999984 444421111 1345788777777764432211100 001 122333 2222 57788888
Q ss_pred hccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCcc--c--cccccCccEEEEcCc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIK--I--DVKEIGADFYVSNLH 252 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~--~--~~~~~~~d~~~~s~~ 252 (452)
.+++++|+++..+++.|...+ +++|.++|++||+ ++|+|++++. +... . ......+|+. |++
T Consensus 182 ------~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--s~s 252 (403)
T PRK05093 182 ------DDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNA-LLIFDEVQTGMGRTGDLFAYMHYGVTPDIL--TSA 252 (403)
T ss_pred ------cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCCCccchhhhhcCCCCCEE--Eec
Confidence 467999999955444454433 8899999999999 8999999872 2111 1 1223346765 556
Q ss_pred ccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 253 KWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 253 K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
|.+.++.-+|+++.++++.+. +..... .. +...+...+.+..++++.+.. +.+.++++++.+
T Consensus 253 K~l~~G~rig~vv~~~~i~~~-l~~~~~----------~~--t~~~~~~~~~aa~a~L~~~~~-----~~~~~~~~~~~~ 314 (403)
T PRK05093 253 KALGGGFPIGAMLTTAEIASH-FKVGTH----------GS--TYGGNPLACAVAEAVFDIINT-----PEVLEGVKARRQ 314 (403)
T ss_pred ccccCCcceEEEEEcHHHHhh-cCCCCC----------CC--CCCCCHHHHHHHHHHHHHHhh-----ccHHHHHHHHHH
Confidence 986543338999998887765 211110 00 012223344445556666542 345677888999
Q ss_pred HHHHHHHHHc-CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAW-GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 333 ~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
++.+.|.++. ...+.......+.++++.++.. ...+..++++.|.++ ||.+.. .
T Consensus 315 ~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~----~~~~~~~~~~~l~~~-Gv~v~~--------------------~ 369 (403)
T PRK05093 315 RFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQ----YKGRARDFLNAAAEE-GVMVLV--------------------A 369 (403)
T ss_pred HHHHHHHHHHhhCCCeEeEeeCceEEEEEecCc----chhHHHHHHHHHHHC-CeEEec--------------------C
Confidence 9999998762 1222222222356777776520 011456788888775 999852 1
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
..+++|++++...++++|+.++++|++++.
T Consensus 370 g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~ 399 (403)
T PRK05093 370 GPDVLRFAPSLVIEEADIDEGLARFEKAVA 399 (403)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 136899998888899999999999999875
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=165.82 Aligned_cols=332 Identities=12% Similarity=0.107 Sum_probs=208.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.|.+++.+.+...... . .+...+...++.++|++++..+ .+.++|++|||+|++.++. ++|.+..
T Consensus 88 ~lGh~hp~v~~Av~~ql~~l~~~-~---~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~SGsEA~e~Alk-lAr~~t~-- 159 (442)
T TIGR03372 88 NVGHRNPNVIAAVENQLAKQPLH-S---QELLDPLRALLAKTLAALTPGK-LKYSFFCNSGTESVEAALK-LAKAYQS-- 159 (442)
T ss_pred hcCCCCHHHHHHHHHHHHhCCCc-c---cccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHH-HHHHHHh--
Confidence 46778888999999988654211 1 1222455677888888887653 3678999999999999998 5555521
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhc----C-----cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRA----G-----GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~----g-----~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
.+.+.+|+.....|++.......+.... + ..+..+ |..+ .+.+++.+++......++.+|+++
T Consensus 160 ~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~----p~~d----~~~~~~~l~~~~~~~~~vAavIvE 231 (442)
T TIGR03372 160 PRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHV----AFGD----IEAMLKALNECKKTGDDVAAIILE 231 (442)
T ss_pred hcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEe----CCCC----HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 0234689998888888654432211100 0 112223 2222 344444443211124678999999
Q ss_pred ccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEEEEe
Q 012991 198 HITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFLYCR 267 (452)
Q Consensus 198 ~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~~~ 267 (452)
......|.+.| ++++.++|++||+ ++|+|+++. +|-.. .+.....+|++++ .|.++++ ..+|.++++
T Consensus 232 pv~g~gG~~~p~~~yl~~l~~lc~~~g~-llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~--gK~lg~G~~Pigavv~~ 308 (442)
T TIGR03372 232 PIQGEGGVILPPEGYLPAVRALCDEFGA-LLILDEVQTGMGRTGKMFACEHEGVQPDILCL--AKALGGGVMPIGATIAT 308 (442)
T ss_pred CccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeecccCCCccccchhhhhcCCCCCeeee--hhhhcCCcccceEEEec
Confidence 99988999888 8999999999999 999999984 44322 1222335898875 5988765 246888888
Q ss_pred cCccccCCC-CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CC
Q 012991 268 KSILSSDMH-HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TS 345 (452)
Q Consensus 268 ~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~ 345 (452)
+++.+. +. .++. ...++.| +..+..+..++++.+.+ +.+.++.+++.+++.+.|.++.. ..
T Consensus 309 ~~i~~~-~~~~~~~---------~~~T~~g--np~~~Aaa~a~L~~i~~-----~~l~~~~~~~G~~l~~~L~~l~~~~~ 371 (442)
T TIGR03372 309 EAVFSV-LFDNPFL---------HTTTFGG--NPLACAAALATINELLE-----KNLPAQAAIKGDFLLDGFQQLAAEYP 371 (442)
T ss_pred HHHHHh-hhccCcc---------ccCCCCC--CHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 777664 21 1100 0111111 22233344445666653 34667788888888888876521 21
Q ss_pred -cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 346 -LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 346 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
........+.++.+.+. +......+.+.|.++ ||.+.... ...+.+|+.++...
T Consensus 372 ~~i~~vRG~Gl~~giel~------~~~~~~~i~~~l~~~-Gvl~~~~~------------------~~~~~lr~~Ppl~~ 426 (442)
T TIGR03372 372 DLIIEARGKGLLMAIEFR------DNEIGYAFAKELFQQ-NILVAGTL------------------NNAKSIRIEPPLTI 426 (442)
T ss_pred CceEEEecceEEEEEEeC------ChHHHHHHHHHHHHC-CcEEeecC------------------CCCCEEEEECCccc
Confidence 22222234667777664 122346788888774 99984211 12368999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 012991 425 TLEDYEKFRDAVILL 439 (452)
Q Consensus 425 t~~di~~l~~~l~~~ 439 (452)
|.+|++++++++.+.
T Consensus 427 t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 427 TIEQCALVIKAAKDA 441 (442)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-18 Score=159.22 Aligned_cols=318 Identities=16% Similarity=0.094 Sum_probs=219.7
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCC--CCEEEEeCCcchhHHHHHHHHHHh
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR--NDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~--g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
.....+..++-..++.+|+.+..+.-.-|+|+|+++.++.....-...+ .++ ..+++++...| .+|..+++.
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~--~k~I~~p~iv~~~~v~----~a~eK~a~y 189 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKA--QKGIDKPNIVTPQNVH----AAFEKAARY 189 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHh--ccCCCCccccchHHHH----HHHHHHHhh
Confidence 3446677889999999999983233366889999955444432111100 011 13566655555 456666777
Q ss_pred cCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH-cCCCEEEEecccc
Q 012991 154 AGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD-EGVDQVFVDAAHA 231 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~~ivD~a~~ 231 (452)
.+.+++.+++. . .+..+ +..+..++ +++|..++.+.++.|+|.+.|+++|.++..+ +++ ++++|++.+
T Consensus 190 f~v~l~~V~~~--~-~~~~~D~~k~~~~i------~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~i-piHvDa~~G 259 (491)
T KOG1383|consen 190 FEVELREVPLD--E-GDYRVDPGKVVRMI------DENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDI-PIHVDACLG 259 (491)
T ss_pred EEEEEEeeecc--c-cceEecHHHHHHHh------ccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCC-ceeecccCc
Confidence 89999999652 1 34444 88999999 7899999999999999999999999999988 999 699999876
Q ss_pred cCCc--------cccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCcccc
Q 012991 232 MGSI--------KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQ 303 (452)
Q Consensus 232 ~g~~--------~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (452)
.... ++|+...++-.++++.||+-+.|.|+|+++.+.+-... ..-++..++.++.....+.-|+.....+
T Consensus 260 gFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~--~q~~~~~~w~Gg~y~s~TlngSR~g~~v 337 (491)
T KOG1383|consen 260 GFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLP--HQLFFHTDWLGGIYASPTLNGSRPGSQV 337 (491)
T ss_pred cccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEccccccc--ceEEEeccccCccccCcccccCCcccHH
Confidence 5444 44666566778999999988889999877776544432 1222233444443333333456666666
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhh
Q 012991 304 LVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR 383 (452)
Q Consensus 304 ~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 383 (452)
+++++++-.+.. +|..+..+++.+.++.+++.++++.++.+++++. ++|.+.+. ...+..++.+.|.+
T Consensus 338 a~~wa~~~~lG~--eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~-----vs~~~~~s----~~~~i~elsd~l~~- 405 (491)
T KOG1383|consen 338 AAQWAALMSLGE--EGYRENTQNIVETARKLREGIENIKGIKIVGKPL-----VSFILFGS----NDVNIFELSDLLRK- 405 (491)
T ss_pred HHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhhhccccceecCCCc-----EEEEEccC----CccchhhhhHHHHh-
Confidence 666666554443 3788888889999999999999998899888754 44444321 34677899999976
Q ss_pred cceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHH-HHHHHHHHHHHHhc
Q 012991 384 FGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED-YEKFRDAVILLVEE 442 (452)
Q Consensus 384 ~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~d-i~~l~~~l~~~~~~ 442 (452)
+|+.++....+ ..+.+++.--+..++ .++++..+++++++
T Consensus 406 ~GW~lnalq~P-------------------~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~e 446 (491)
T KOG1383|consen 406 KGWILNALQFP-------------------AAIHICVTRVHAREDVADRFVADIRKVVEE 446 (491)
T ss_pred cCcCccccCCC-------------------CceEEEEEeeeccHHHHHHHHHHHHHHHHH
Confidence 59998754433 356666654445555 67788888777754
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-18 Score=150.62 Aligned_cols=353 Identities=13% Similarity=0.082 Sum_probs=209.1
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh---hhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChh
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF---YFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNAT 108 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t 108 (452)
..+.+.|..|.+...|. +.+..+............. -.|...++...+.+++++++ |-. ...+|.+|+|+.
T Consensus 29 t~g~imLggGNPa~iPe-m~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQ 107 (417)
T COG3977 29 TPGAIMLGGGNPARIPE-MDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQ 107 (417)
T ss_pred CCCceeeCCCCcccChh-HHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCcc
Confidence 46689999888888887 8888777766654444221 12444555555566666554 322 267999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCC--CEEEEe-CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH--HHHHHHH-Hh
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRN--DTVLML-HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI--INEFKKG-IE 182 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g--~~Vl~~-~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~--~~~l~~~-i~ 182 (452)
.+...++..++-+. ..| ++|+.+ .|+|.+...+--. +--++.+.+.......+.+ --++++. +
T Consensus 108 s~fFYlfNlF~G~~-----sdG~~k~illPLaPeYiGY~d~~l~-----~d~fVs~kP~iel~~~g~FKY~vDF~~l~i- 176 (417)
T COG3977 108 SAFFYLFNLFAGRR-----SDGTEKKILLPLAPEYIGYADAGLE-----EDLFVSAKPNIELLPAGQFKYHVDFEHLHI- 176 (417)
T ss_pred chHHHHHHHhcCcc-----CCCcceeEeeccChhhccccccccC-----ccceeeccCCcccccccceeeccCHHHccc-
Confidence 99999998775332 333 467776 8898775322110 1112222211111122222 1222221 2
Q ss_pred ccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccccccc----cCcc-EEEEcCccc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE----IGAD-FYVSNLHKW 254 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~----~~~d-~~~~s~~K~ 254 (452)
++.+.+|+++-|+||||.+.- +.+|.+++++||+ ++++|.|++.+...+-+.. |+.. +.++|.+|
T Consensus 177 -----~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~gi-PliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK- 249 (417)
T COG3977 177 -----GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGI-PLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSK- 249 (417)
T ss_pred -----ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCC-cEEEecccCCCCCceecccccccCCCCEEEEeehhh-
Confidence 678999999999999999974 5567778999999 6999999987654433322 2333 56779999
Q ss_pred CcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh---hcCHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF---EGGIDGIMQRNHE 329 (452)
Q Consensus 255 l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~---~~g~~~~~~~~~~ 329 (452)
.|.+| +|+++.+++++.. ..... ..... . ..-++.+.+.+.+++- ....+-++-.++.
T Consensus 250 -~GLPG~R~GIiIane~viqa--itnmn---~iisL-------a----p~~~G~Aia~~mie~gdl~rlseqVIrPFY~~ 312 (417)
T COG3977 250 -LGLPGSRCGIIIANEKVIQA--ITNMN---GIISL-------A----PGRMGPAIAAEMIESGDLLRLSEQVIRPFYRN 312 (417)
T ss_pred -cCCCCcceeEEEccHHHHHH--HHhcc---ceeee-------c----CCCccHHHHHHHhhcchHHHHHHHhhhHHHHH
Confidence 45555 8999999988875 11110 00000 0 0111222233333320 0012223333444
Q ss_pred HHHHHHHHHHHH-c--CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeeccc-CCCCCCCCCCCC
Q 012991 330 QALKMARMLANA-W--GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ-APKDDGQPQAGA 405 (452)
Q Consensus 330 ~~~~l~~~L~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~-~~~~~~~~~~~~ 405 (452)
..+.....|+.. + .+.+-.|++ ..|.|.++.+ -..+..++++.|.++ |+.+.+++. +++.+
T Consensus 313 ~~q~~~~~l~~~lp~~~~~iHkpEG--AIFlWLWf~d-----LPItt~~LYq~LKa~-Gvl~VPG~~FFpGl~------- 377 (417)
T COG3977 313 RVQTTIAILRRYLPEYRCLIHKPEG--AIFLWLWFKD-----LPITTEELYQRLKAR-GVLMVPGHYFFPGLD------- 377 (417)
T ss_pred HHHHHHHHHHHhcCccceeeecCCc--ceeehhhhcc-----CCCCHHHHHHHHHhC-eEEEecccccCCCCC-------
Confidence 444444444432 2 234445554 5566665542 246788999999775 988765544 44321
Q ss_pred CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 406 RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 406 ~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
+--....+|+|++... +.+.|++-+.+|.+.+++.
T Consensus 378 -~ewpH~hqC~Rmn~~~--~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 378 -KEWPHTHQCMRMNYVP--EPEKIEKGVAILAEEVERA 412 (417)
T ss_pred -CCCCCccceEEEecCC--CHHHHHHHHHHHHHHHHHH
Confidence 0012456799999976 7888999999988887654
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=158.63 Aligned_cols=346 Identities=16% Similarity=0.146 Sum_probs=231.1
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch-----hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEec-ChhHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD-----FYFNSLRKGILESRAAVKDLINADDVGEISLVD-NATTAAA 112 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~-g~t~a~~ 112 (452)
.+.+|+.| +...|++|++..+.-+..+.+.+.+ +.+..+.+...++++.+++++++|+.-.|+|.. |+|..+.
T Consensus 5 ~~~nFsaG-Pa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~ 83 (365)
T COG1932 5 RVYNFSAG-PAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFA 83 (365)
T ss_pred CCCCCCCC-cccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHH
Confidence 45677754 5666777888888877777664433 345677888999999999999999777888876 5778888
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH--HHHHHHHHhccccCCCc
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI--INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~--~~~l~~~i~~~~~~~~~ 190 (452)
.+..+|. ..+..=.+....|.+....+ |...+..+.........++.+.+ .+... + .++
T Consensus 84 ~~p~nLl--------~~~~~~yv~~g~Ws~~a~~e---A~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~------~~~ 144 (365)
T COG1932 84 MAPMNLL--------GKRGTDYVDTGAWSEFAIKE---AKKVGKQPKLIDARIEEAGYGSIPDLSKWD--F------SDN 144 (365)
T ss_pred HHHHhhh--------cccCceeEeeeehhHhHHHH---HHHhcccccccccceeccCccCCCChhhcc--c------CCC
Confidence 8888873 33322033344444432333 45555433332211011122222 22211 2 233
Q ss_pred eEEEEEeccCCCCcccccH-HHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 191 IRLAIIDHITSMPCVVIPV-RKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l-~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
..-|.+|+.++.+|+.++- +.+. .+ . ++++|.++.++..++|+.+ .|++.++.+|. .||.|+++++++++
T Consensus 145 ~ayv~~~~NeTi~Gv~v~~~p~~~---~~--~-~~v~D~SS~ilsr~iDvsk--~dviyagaQKn-lGpaGltvvIvr~~ 215 (365)
T COG1932 145 DAYVHFCWNETISGVEVPELPDIG---SD--G-LLVADASSAILSRPIDVSK--YDVIYAGAQKN-LGPAGLTVVIVRPD 215 (365)
T ss_pred ccEEEEecCCcccceEccCCCCCC---CC--c-eEEEecccHHhcCCCChhH--cceEEEehhhc-cCccceEEEEEcHH
Confidence 5558999999999998772 3331 11 6 6999999999999999986 48999999996 89999999999999
Q ss_pred ccccCCCCCc-eec--cCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-
Q 012991 270 ILSSDMHHPV-VSH--EFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS- 345 (452)
Q Consensus 270 ~~~~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~- 345 (452)
++.+ + ..+ ... .|-. ...+.....||+...++-+..+++|+.+ .+|++++.++.++.++.|++.+.+.+-+.
T Consensus 216 ~l~r-~-~~~~~P~if~y~~-~~~~~s~yNTPptfa~y~~~lv~~Wlk~-~GGl~~~~~rn~~ka~~LY~~id~s~fy~~ 291 (365)
T COG1932 216 LLER-A-ESYTLPSIFDYLT-HADNGSMYNTPPTFAWYLLGLVFKWLKS-QGGLEALEARNQAKAQLLYDWIDKSDFYRN 291 (365)
T ss_pred HHhc-c-cccCCchHhhchh-hhccCCccCCcHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 9987 2 111 100 1111 1122233478888888889999999998 58999999999999999999999873222
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
...+......-++|.+.+ ...+. .+...+.++ |+..-.++.. .+.+|+|+.....
T Consensus 292 ~v~~~~RS~mnV~f~~~~-----~~ld~-~fv~eae~~-gl~~lkGhr~------------------vgGmRasiynA~~ 346 (365)
T COG1932 292 LVAKANRSRMNVTFTLVD-----AELDK-GFVAEAEAA-GLIYLKGHRS------------------VGGLRASIYNAVP 346 (365)
T ss_pred ccchhhccceeEEEEcCc-----HHHHH-HHHHHHHHc-CCceeccccC------------------CCceeeeeecCCC
Confidence 333332333446777752 23444 444554444 7665545332 3459999998889
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
.++|+.|++.|+.+.++
T Consensus 347 ~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 347 LEDVEALTDFMDWFEET 363 (365)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=164.30 Aligned_cols=328 Identities=14% Similarity=0.123 Sum_probs=194.9
Q ss_pred CCCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.++.++.+..+ ..++ .+.+.+++.+.+.....++.. ...+.++.+++.+.......++|++|||+|+
T Consensus 27 dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~--------~~~~~~~~la~~l~~~~~~~~~~~~SGseA~ 97 (375)
T PRK04260 27 DGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNL--------YLNSLQEEVAQKLIGDKDYLAFFCNSGAEAN 97 (375)
T ss_pred CCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCc--------cCCHHHHHHHHHHhcCcCCEEEEcCccHHHH
Confidence 34445555333 2467 455999999887654222211 2344566677655433123468999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh------cCcEEEEEeCCCCCCChHHHHHHHHHHHhccc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR------AGGSVVEVQLPFPLASEEEIINEFKKGIEKGK 185 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~------~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~ 185 (452)
..++... +. ..++++|++.+..|++.......++.. .+..+..++.. +.+ ..+.+++.+
T Consensus 98 ~~Al~~a-r~-----~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----dl~~l~~~l---- 162 (375)
T PRK04260 98 EAAIKIA-RK-----ATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA-IFN----DLNSVKALV---- 162 (375)
T ss_pred HHHHHHH-HH-----hcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe-CCC----CHHHHHHhc----
Confidence 9888865 22 245678888877766533222111110 00000001000 111 167788877
Q ss_pred cCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc--cc--cccccCccEEEEcCcccCc
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI--KI--DVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~--~~--~~~~~~~d~~~~s~~K~l~ 256 (452)
.+++++|+++.+++++|.+.+ +++|.++|+++|+ ++|+|+++. +|.. .. ......+|++ +++|.+.
T Consensus 163 --~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~-~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~ 237 (375)
T PRK04260 163 --NKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGI-LLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLA 237 (375)
T ss_pred --CCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhhCCCcccchhhhHhhCCCCCEE--Eeccccc
Confidence 457899999999999999865 7999999999999 899999985 2211 11 1223457866 5679876
Q ss_pred CCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 257 CPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 257 g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
++.-+|++++++++... +.... .... ...+...+.+..++++.+. .+.+.++.++..+++++
T Consensus 238 ~G~~ig~~~~~~~~~~~-~~~~~----------~~~t--~~~~~~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~~~~ 299 (375)
T PRK04260 238 NGVPVGAMLAKSSLGGA-FGYGS----------HGST--FGGNKLSMAAASATLDIML-----TAGFLEQALENGNYLQE 299 (375)
T ss_pred CCcceEEEEEcHHHHhh-cCCCC----------CCCC--CCcCHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHH
Confidence 43347999998877664 21110 0000 1112223333333444433 23455666666777777
Q ss_pred HHHHHcC-CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 337 MLANAWG-TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 337 ~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
.|.+... ..........+.++++.++ .+..++.+.|.+ .||.+.+ ...+.
T Consensus 300 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~-~Gi~v~~--------------------~~~~~ 350 (375)
T PRK04260 300 QLQKALQDKETVTTVRGLGYMIGIETT--------ADLSQLVEAARD-KGLIVLT--------------------AGTNV 350 (375)
T ss_pred HHHHHHhhCCCeeEEeccceEEEEEec--------CcHHHHHHHHHh-CCCEEec--------------------CCCCE
Confidence 6665421 1111111123677777663 245678899876 4999842 12368
Q ss_pred EEecccccCCHHHHHHHHHHHHHH
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+|++++...+.+||++++++|+++
T Consensus 351 lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 351 IRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred EEEcCCCccCHHHHHHHHHHHHHh
Confidence 999998888999999999999875
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-17 Score=161.00 Aligned_cols=340 Identities=14% Similarity=0.109 Sum_probs=208.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC--CCCcEEEe-cChhHHHHHHHHHhhcccc
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD--DVGEISLV-DNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~i~~t-~g~t~a~~~~~~~l~~~~~ 123 (452)
..|..++.|.+++.+.+.... .... .....+...++.+++++.+..+ ..+.++|+ +||++|++.++.. +|.+
T Consensus 48 ~lGh~~p~v~~ai~~ql~~~~-~~~~--~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~Alkl-Ar~~- 122 (412)
T TIGR02407 48 NYGHNNPKLKQALIDYLADDG-IIHS--LDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKL-ARKV- 122 (412)
T ss_pred cCCCCCHHHHHHHHHHHhhcc-ceec--cccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHH-Hhhh-
Confidence 356788889999998876421 1111 1112344566777777764222 11356664 8999999999984 4443
Q ss_pred cCCCCCCCEEEEeCCcchhHHHHHHHHHHh------cC---cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 124 EGRFHRNDTVLMLHCAFQAVKKSIQAYVTR------AG---GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 124 ~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~------~g---~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
..+.+|+.....||+.......+... .+ ..+..+|.+.........++.+++.+++.....+++++|
T Consensus 123 ----tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aav 198 (412)
T TIGR02407 123 ----TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAV 198 (412)
T ss_pred ----cCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEE
Confidence 34568999898888865544332110 01 122333221000000122667888775432212468999
Q ss_pred EEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcC-CCCcEEE
Q 012991 195 IIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFC-PPSVAFL 264 (452)
Q Consensus 195 ~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g-~~G~G~l 264 (452)
+++...++.|.+.+ +++|.++|++||+ ++|+|++++ +|-. ..+.....+|++++| |++.+ ..-+|++
T Consensus 199 i~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~pigav 275 (412)
T TIGR02407 199 ILETVQGEGGINVASDEWLQRLEKLCRRHDI-LLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLPLALT 275 (412)
T ss_pred EeccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCccchhHHhcccCCCCCEEEec--hhccCCccceeEE
Confidence 99999999998643 7789999999999 899999986 4322 223334578988765 98764 4448999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
+++++. .. + .+.. ...++ +.+..+..+..++++. +. .+.+.++++++.+++.+.|..+..
T Consensus 276 ~~~~~~-~~-~-~~~~---------~~~T~--~gnpl~~aaa~a~l~~~i~-----~~~l~~~~~~~g~~l~~~l~~l~~ 336 (412)
T TIGR02407 276 LIKPEL-DV-W-KPGE---------HNGTF--RGNNLAFVTATAALEYYWS-----DDAFEKAVQRKSEIIQERLDRIVA 336 (412)
T ss_pred EEchhh-hc-c-CCCc---------cCCCC--CccHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 998775 43 1 1110 00111 1222222333445553 33 245677788888888888775421
Q ss_pred -CC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 344 -TS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 344 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
.. +.......+.++++.++ +......+...+.++ ||.+.... ..++.||++++
T Consensus 337 ~~~~~~~~vrg~Gl~~~l~l~------~~~~~~~~~~~~~~~-Gv~v~~~~------------------~~~~~lr~~p~ 391 (412)
T TIGR02407 337 EYPELIKQVRGRGLMQGIECG------DGDLAGKIAKAAFEN-GLIIETSG------------------PNDEVIKLLPP 391 (412)
T ss_pred hCCCceEeeecceeEEEEEec------ChHHHHHHHHHHHHC-CCEEeccC------------------CCCCEEEEECC
Confidence 11 11222234677888886 233456788888764 99985311 22468999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
...|++|++.+++++++.+++
T Consensus 392 l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 392 LTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998853
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-17 Score=161.90 Aligned_cols=343 Identities=14% Similarity=0.146 Sum_probs=210.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+........ .+...+...++-+.|++.++.. .+.++|+++||+|++.++. ++|.+
T Consensus 54 ~lGh~~p~v~~Ai~~ql~~~~~~~~---~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGsEAve~Alk-lAr~~---- 124 (443)
T PRK08360 54 NVGHNNPRVVKAIKEQTDKLIHYTP---IYGFPVEPLLLAEKLIEIAPGD-NPKVSFGLSGSDANDGAIK-FARAY---- 124 (443)
T ss_pred ccCCCCHHHHHHHHHHHHhccCccc---cccCcHHHHHHHHHHHHhCCCC-CCEEEEcCCHHHHHHHHHH-HHHHh----
Confidence 4567888899999998875321111 1122345567778888887653 3689999999999999998 55554
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh-----c--C--cEEEEEeCCCCCC-------ChH--HHHHHHHHHHhccccCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR-----A--G--GSVVEVQLPFPLA-------SEE--EIINEFKKGIEKGKKDG 188 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~-----~--g--~~v~~~~~~~~~~-------~~~--~~~~~l~~~i~~~~~~~ 188 (452)
..+.+|+.....|++.......+... . + ..+..++.+.... .+. ...+.+++.+++.. ..
T Consensus 125 -tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 202 (443)
T PRK08360 125 -TKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEV-YA 202 (443)
T ss_pred -cCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhcc-CC
Confidence 34567888888877754332211110 0 0 1233333221000 000 12455666664311 13
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
+++++|+++...+++|.+.+ +++|.++|++||+ ++|+|++++ +|... .......+|++++ +|.+.++.
T Consensus 203 ~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~-llI~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~~G~ 279 (443)
T PRK08360 203 EGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGI-LLVVDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLGGGL 279 (443)
T ss_pred CCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCccchhhhhcCCCCCEEEe--cccccCCc
Confidence 67999999988899999876 7789999999999 899999986 33221 1122345788765 69876543
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
.+|++++++++.+. +. .. .+ . .+...+.....+..++++.+.+ +.+.++++++.+++.+.|.
T Consensus 280 pigav~~~~~i~~~-~~-~~-~~--------~--~T~~~~p~~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l~~~L~ 341 (443)
T PRK08360 280 PISATIGRAEIMDS-LP-PL-AH--------A--FTLSGNPVASAAALAVIEEIEE-----KNLLKRAEKLGNYTKKRLE 341 (443)
T ss_pred eeEEEEEcHHHHhh-hc-CC-CC--------C--CCCCcCHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHH
Confidence 47898888877765 21 11 00 0 0111222234444455555553 2467888888889888887
Q ss_pred HHc-CCCcCCCcccccceEEEEcCCc--cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 340 NAW-GTSLGSPPEICAAMVMVGLPSR--LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 340 ~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
++. ...++......+.++.+.+.+. ....+......+...|.+ .||.+.. ...+.+
T Consensus 342 ~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~--------------------~~~~~l 400 (443)
T PRK08360 342 EMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWE-LGLIVTF--------------------FSGNVL 400 (443)
T ss_pred HHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHH-CCeEEee--------------------cCCCEE
Confidence 652 2333333323355655554210 000111234567788876 4998742 123689
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++..+|++||+.+++++.+.+..
T Consensus 401 r~~P~l~~t~~~id~~~~~l~~~l~~ 426 (443)
T PRK08360 401 RIQPPLTIEKEVLDEGLDILEEAIED 426 (443)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998864
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-17 Score=152.77 Aligned_cols=329 Identities=21% Similarity=0.261 Sum_probs=219.4
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEe-cChhHHHHHHHHHhhcccccCCCC-CCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLV-DNATTAAAIVLQQIGRGFTEGRFH-RNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t-~g~t~a~~~~~~~l~~~~~~~~~~-~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
.+..+++.+++++|++..|.+ .|.+. +.|+++=.+-+. +.|+|-+..-. .++.|++++..|..|..... .
T Consensus 105 qG~l~li~~Lq~~L~~ITG~D---avsLQP~AGAqGE~aGll-~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAa----m 176 (496)
T COG1003 105 QGYLELIYELQEWLKEITGMD---AVSLQPNAGAQGEYAGLL-AIRAYHESRGEGHRNICLIPDSAHGTNPASAA----M 176 (496)
T ss_pred HHHHHHHHHHHHHHHHhcCCc---eeeccCCCCcchhhHHHH-HHHHHHHHcCCCcCcEEEeeccccCCChhhHh----h
Confidence 566788999999999999985 55544 456555343333 33444322212 34689999999999876654 4
Q ss_pred cCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccc-cHHHHHHHHHHcCCCEEEEecccc
Q 012991 154 AGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVI-PVRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~-~l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
.|.+|+.+ +.++++.+ +++|++.+ +++++++++++|++ .|.+- ++.+|+++.|++|. .+..|||.-
T Consensus 177 ~G~~VV~V----~~~~~G~VDlddLk~k~------~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg-~vY~DGANl 244 (496)
T COG1003 177 AGFKVVVV----KCDENGNVDLDDLRAKA------EDNLAALMITNPST-LGVFEEDIREICEIVHEAGG-QVYYDGANL 244 (496)
T ss_pred cCceEEEE----ecCCCCCccHHHHHHHh------ccceeEEEeccCcc-cccchhhHHHHHHHHHHcCC-EEEecCcch
Confidence 69999999 66777887 99999999 68999999999987 68874 69999999999999 899999853
Q ss_pred cCCcc-ccccccCccEEEEcCcccCcCCC-----CcEEEEEecCccccCCCCCceeccCCC---Ccc-cccccccccCcc
Q 012991 232 MGSIK-IDVKEIGADFYVSNLHKWFFCPP-----SVAFLYCRKSILSSDMHHPVVSHEFGN---GLP-IESAWIGTRDYS 301 (452)
Q Consensus 232 ~g~~~-~~~~~~~~d~~~~s~~K~l~g~~-----G~G~l~~~~~~~~~~l~~~~~~~~~~~---~~~-~~~~~~~~~~~~ 301 (452)
-..+. .....+|+|++-+++||+|+.|+ |.|-+.++..+... +-.|...+..+. ... ....-.....+.
T Consensus 245 NA~vG~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pf-LP~p~~~~~~~~y~~~~~~~~s~g~~~a~~G 323 (496)
T COG1003 245 NAIVGLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPF-LPGPVVYHDVGEYRLDYDGKKSIGVSAAPYG 323 (496)
T ss_pred hhhhccccccccccceEEeecccccccCCCCCCCCCCceehHhhcccc-CCCCcccCCCccccccCCCCccceeeccccC
Confidence 32222 12334589999999999986554 47788888777764 322221011110 000 000000112222
Q ss_pred ccccHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc-cccceEEEEcCCccccCChhhHHHHHHH
Q 012991 302 AQLVIPSAVTFVSRF-EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGH 379 (452)
Q Consensus 302 ~~~~~~~al~~~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (452)
+...+..+..++... ..|++..-+...-+++|+.+.|+. .+++...+. .+..-+.+.... +....+.+..++++.
T Consensus 324 s~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~-l~~~~Gv~~~DvAKr 400 (496)
T COG1003 324 SASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARP-LKKETGVRALDVAKR 400 (496)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechH-hHhhcCCcHHHHHHH
Confidence 222233334333332 136777777788899999999986 344432222 223333333321 122346788999999
Q ss_pred HhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 380 LRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 380 L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
|.. +|+..|+.+++ ....+.+-|-+.-..+.+++|+++++|.++.++..
T Consensus 401 LlD-~GfHaPT~~FP---------------liV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~ 449 (496)
T COG1003 401 LLD-YGFHAPTMYFP---------------LIVAGTLMIEPTESESKEELDRFIDAMIAIREEAD 449 (496)
T ss_pred HHh-cCCCCCcccCc---------------cccccceeecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 975 79999988876 23457899998887889999999999999987654
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=157.39 Aligned_cols=343 Identities=12% Similarity=0.082 Sum_probs=207.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... .... .....+...++.++|++.+..+..+.+.|++|||+|++.++.. +|.+
T Consensus 67 ~lGh~~p~v~~Ai~~ql~~~~-~~~~--~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~Alkl-Ar~~---- 138 (441)
T PRK05769 67 NVGHAHPKVVKAVKEQAEKFL-HYSL--TDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKI-ARYH---- 138 (441)
T ss_pred ccCCCCHHHHHHHHHHHHhcc-CccC--cccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHH-HHHH----
Confidence 356777889999999886531 1111 1112345677888888887532136899999999999999984 4443
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh-c---------CcEEEEEeCCC----CCC--C---hHH-HHHHHHHHHhcccc
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR-A---------GGSVVEVQLPF----PLA--S---EEE-IINEFKKGIEKGKK 186 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~-~---------g~~v~~~~~~~----~~~--~---~~~-~~~~l~~~i~~~~~ 186 (452)
..+.+|+....+|++.......+... . ...+..++.+. +.+ + +.. ..+.+++.+.+...
T Consensus 139 -tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 217 (441)
T PRK05769 139 -TGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLV 217 (441)
T ss_pred -hCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhcc
Confidence 34568998888888865443322100 0 01123333211 001 0 111 14556663321101
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc--c--cccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK--I--DVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~--~~~~~~~d~~~~s~~K~l~g 257 (452)
...++.+|+++......|.+.| +++|.++|++||+ ++|+|++++ +|... + ......+|++++| |.+++
T Consensus 218 ~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~-lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~--K~l~~ 294 (441)
T PRK05769 218 PPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGI-LLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLA--KAIAG 294 (441)
T ss_pred CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhhCCCcccceehhhccCCCCCEEEEc--ccccC
Confidence 1357899999999998999988 9999999999999 899999987 33222 1 1112357988754 88776
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
+..+|++++++++... .... ...++.+ +.....+..++++.+. . .+.++.+++.++|.+.
T Consensus 295 G~p~gav~~~~~i~~~--~~~~----------~~~T~~g--~p~~~aaa~a~L~~l~-----~-~~~~~~~~~g~~l~~~ 354 (441)
T PRK05769 295 GLPLGAVIGRAELMFL--PPGS----------HANTFGG--NPVAAAAALATLEELE-----E-GLLENAQKLGEYLRKE 354 (441)
T ss_pred CcccEEEEEehhhhhc--CCCC----------CCCCCCc--CHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHH
Confidence 5557888888877642 1100 0111112 2222333333444443 2 6678888999999999
Q ss_pred HHHHcC-CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 338 LANAWG-TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 338 L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
|.++.. ..++......+.++.+.+.+.....+......+.+.+.++ ||.+.. ...+.+
T Consensus 355 L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-Gil~~~--------------------~~~~~l 413 (441)
T PRK05769 355 LKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKR-GLLLLG--------------------AGKSAI 413 (441)
T ss_pred HHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhC-CcEEec--------------------CCCCEE
Confidence 977632 3333232233556665552110000111235677777664 998842 123689
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|+++....|++||+++++++++++..
T Consensus 414 r~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 414 RIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998853
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-18 Score=158.99 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=138.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+....+++.++++.|+. +++.+++|..|+..++..+ ++.|++|+.....|.....-++.+..+
T Consensus 71 Ysr~~nPt~~~le~~iaal~ga~---~~l~fsSGmaA~~~al~~L--------~~~g~~iV~~~~~Y~gT~~~l~~~~~~ 139 (409)
T KOG0053|consen 71 YSRSGNPTRDVLESGIAALEGAA---HALLFSSGMAAITVALLHL--------LPAGDHIVATGDVYGGTLRILRKFLPK 139 (409)
T ss_pred cccCCCCchHHHHHHHHHHhCCc---eEEEecccHHHHHHHHHHh--------cCCCCcEEEeCCCcccHHHHHHHHHHH
Confidence 44444566788999999999995 5788888888888888876 588999999999999999988888889
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++...+++ ++ .+.+++++ .+++++|+++.|+||+..+.|+++|+++||++|+ +++||.+.+.+
T Consensus 140 ~gie~~~vd~----~~----~~~~~~~i------~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~-~vvVDnTf~~p 204 (409)
T KOG0053|consen 140 FGGEGDFVDV----DD----LKKILKAI------KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGF-LVVVDNTFGSP 204 (409)
T ss_pred hCceeeeech----hh----HHHHHHhh------ccCceEEEEECCCCCccccccHHHHHHHHhhCCC-EEEEeCCcCcc
Confidence 9999998842 22 68888888 5789999999999999999999999999999999 89999987766
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEe
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR 267 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~ 267 (452)
.-.+.-.+|+|+++.|.+||++|-.- .|.++.+
T Consensus 205 -~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n 239 (409)
T KOG0053|consen 205 -YNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLN 239 (409)
T ss_pred -cccChhhcCCCEEEEeeeeeecCCcceeeeEEecC
Confidence 33455566899999999998655322 4677776
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-16 Score=156.14 Aligned_cols=340 Identities=13% Similarity=0.140 Sum_probs=204.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC-C-CcEEEe-cChhHHHHHHHHHhhcccc
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD-V-GEISLV-DNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~-~~i~~t-~g~t~a~~~~~~~l~~~~~ 123 (452)
..|..++.+.+++.+.+.... .... .....+...++.+++++.+..+. . +.++|+ +|||+|++.++. ++|.+
T Consensus 52 ~lGh~~p~v~~ai~~ql~~~~-~~~~--~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~Alk-lAr~~- 126 (425)
T PRK09264 52 NYGHNNPVLKQALIDYLQRDG-ITHG--LDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALK-LARKV- 126 (425)
T ss_pred cCCCCCHHHHHHHHHHHHhcc-cccc--cccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHH-HHHHh-
Confidence 356778889999998876421 1111 11123445667777777653221 1 256674 899999999998 44544
Q ss_pred cCCCCCCCEEEEeCCcchhHHHHHHHHHH----h--cC---cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 124 EGRFHRNDTVLMLHCAFQAVKKSIQAYVT----R--AG---GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 124 ~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~----~--~g---~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
..+.+|+....+|++.......+.. + .+ ..+..++.+.....+...++.+++.+++.....+++.+|
T Consensus 127 ----tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aav 202 (425)
T PRK09264 127 ----TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAV 202 (425)
T ss_pred ----cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEE
Confidence 3456889888888886543322111 0 01 123344321100001123677888886432212468899
Q ss_pred EEeccCCCCcccc----cHHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcC-CCCcEEE
Q 012991 195 IIDHITSMPCVVI----PVRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFC-PPSVAFL 264 (452)
Q Consensus 195 ~~~~~~n~tG~~~----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g-~~G~G~l 264 (452)
+++......|.+. .+++|.++|++||+ ++|+|++++ +|-. ..+.....+|++++| |.+.+ +..+|++
T Consensus 203 i~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~--K~l~~~G~pigav 279 (425)
T PRK09264 203 IVETVQGEGGINVASAEWLQRLAKLCRKHDI-LLIVDDIQAGCGRTGTFFSFERAGITPDIVTLS--KSISGYGLPMALV 279 (425)
T ss_pred EEecccCCCCCcCCCHHHHHHHHHHHHHcCc-EEEEechhhCCccccHHHHHhhcCCCCCEEEec--cccCCCccceEEE
Confidence 9999988888765 38899999999999 899999986 3211 123233468987775 97543 3336888
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH-HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV-TFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
++++++ .. + .+.. . ..++.++ ..+..+..+++ +.+. .+.+.++++++.+++.+.|.++..
T Consensus 280 ~~~~~i-~~-~-~~~~---~------~~T~~gn--p~~~aaa~a~l~~~~~-----~~~l~~~~~~~g~~l~~~l~~l~~ 340 (425)
T PRK09264 280 LIKPEL-DV-W-KPGE---H------NGTFRGN--NLAFVTATAALEEYWS-----DDAFEKEVKAKGELVRERLEEIAA 340 (425)
T ss_pred EEchhh-hc-c-CCCc---c------CCCCCCC--HHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888775 33 2 1110 0 0111122 22223333444 2322 245778888888888888876521
Q ss_pred -CC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 344 -TS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 344 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
.. +.......+.++++.++ +......+...+.++ ||.+.... .....||++++
T Consensus 341 ~~~~~~~~vrg~Gl~~~i~l~------~~~~~~~l~~~~~~~-Gv~~~~~~------------------~~~~~lr~~p~ 395 (425)
T PRK09264 341 KYPGLGAEVRGRGMMQGIDFG------DGELAGKIAAEAFEN-GLIIETSG------------------PEDEVVKLLPP 395 (425)
T ss_pred hCCCceecceecccEEEEEec------ChHHHHHHHHHHHHC-CCEEeccC------------------CCCCEEEEeCC
Confidence 22 11222233667777775 233456788888765 99985321 12368999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+|++||+.++++|++.++.
T Consensus 396 l~~t~~ei~~~~~~l~~~l~~ 416 (425)
T PRK09264 396 LTIDEEELEEGLDILEEAVAE 416 (425)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999998864
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=158.48 Aligned_cols=344 Identities=14% Similarity=0.169 Sum_probs=210.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.|.+++.+.+..... ... .....+...++.++|++.+.....+.++|++||++|++.++. ++|.+
T Consensus 55 ~lGH~~p~v~~Ai~~ql~~~~~-~~~--~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~Aik-lAr~~---- 126 (445)
T PRK08593 55 NVGHAPPRVVEAIKAQADKFIH-YTP--AYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIK-FARAY---- 126 (445)
T ss_pred cCCCCCHHHHHHHHHHHHhccC-ccc--cccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHH-HHHHh----
Confidence 3567778899999988765311 111 112245567788888888754212589999999999999998 44443
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh-------cC---cEEEEEeCCCCC------C-ChH--HHHHHHHHHHhccccC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR-------AG---GSVVEVQLPFPL------A-SEE--EIINEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~-------~g---~~v~~~~~~~~~------~-~~~--~~~~~l~~~i~~~~~~ 187 (452)
..+.+|+..+..|++.......+... .+ ..+..++.+... . .+. ..++.+++.+++.. .
T Consensus 127 -tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 204 (445)
T PRK08593 127 -TGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYL-P 204 (445)
T ss_pred -hCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhc-C
Confidence 33567888888888765433221110 00 113334322110 0 011 11456666554210 1
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCccc----cccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIKI----DVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~~----~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++++|+++......|.+.| +++|.++|++||+ ++|+|+++ ++|.... +.....+|++++ +|.+.++
T Consensus 205 ~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~-llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~--gK~l~~G 281 (445)
T PRK08593 205 ADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGI-LFAVDDIQQGLGRTGKWSSISHFNITPDLMSF--GKSLAGG 281 (445)
T ss_pred CCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhhCCCcCchHHHHHhcCCCCCEeee--cccccCC
Confidence 357899999999998898876 8899999999999 89999997 4443221 222335787765 4887654
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|++++++++.+. +.... ..++...+.....+..++++.+.+ +.+.++.+++.+++.+.|
T Consensus 282 ~p~gav~~~~~i~~~-~~~~~------------~~~T~~~~pl~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l~~~L 343 (445)
T PRK08593 282 MPMSAIVGRKEIMES-LEAPA------------HLFTTGANPVSCAAALATIDMIED-----ESLLQRSAEKGEYARKRF 343 (445)
T ss_pred cccEEEEEcHHHHhh-hccCC------------CCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHH
Confidence 447888898888765 21110 000112222333444455566553 356778888889999988
Q ss_pred HHHc-CCCcCCCcccccceEEEEcCCc--cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 339 ANAW-GTSLGSPPEICAAMVMVGLPSR--LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
.++. ...++......+.++.+.+... ....+......+...+.+ .||.+... ..+.
T Consensus 344 ~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~--------------------~~~~ 402 (445)
T PRK08593 344 DQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVIIAV--------------------AGNV 402 (445)
T ss_pred HHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEecc--------------------CCCE
Confidence 8752 1233222223344555544210 011112234568888866 49988421 1368
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|++++..+|++||+.+++++.+.++.
T Consensus 403 lr~~p~l~~t~~~id~~~~~l~~~l~~ 429 (445)
T PRK08593 403 LRFQPPLVITYEQLDTALNTIEQAFTA 429 (445)
T ss_pred EEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998864
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-16 Score=161.01 Aligned_cols=356 Identities=12% Similarity=0.106 Sum_probs=211.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccC
Q 012991 46 GSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG 125 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~ 125 (452)
...|...+.+.+++.+.+..... .+.. .....+...++.++|.+++...+.+.++|+++|++|+..++... |.|...
T Consensus 101 ~~lGh~hp~v~~Av~~ql~~~~~-~~~~-~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlA-r~~~~~ 177 (504)
T PLN02760 101 TALGGSEPRLVAAATEQLNKLPF-YHSF-WNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLV-WYYNNA 177 (504)
T ss_pred cccCCCCHHHHHHHHHHHhhccc-eecc-cccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHH-HHHHHh
Confidence 45667778899999998875321 1111 01224556778888888764322468999999999999999854 443211
Q ss_pred CCCC-CCEEEEeCCcchhHHHHHHHHHH------hcCc---EEEEEeCCC------CCCChH---HH-HHHHHHHHhccc
Q 012991 126 RFHR-NDTVLMLHCAFQAVKKSIQAYVT------RAGG---SVVEVQLPF------PLASEE---EI-INEFKKGIEKGK 185 (452)
Q Consensus 126 ~~~~-g~~Vl~~~~~~~s~~~~~~~~a~------~~g~---~v~~~~~~~------~~~~~~---~~-~~~l~~~i~~~~ 185 (452)
.-.+ ..+|+..+..|++.......+.. ..+. .+..++.+. +..... .. .+++++.+.+.
T Consensus 178 ~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~- 256 (504)
T PLN02760 178 LGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKE- 256 (504)
T ss_pred cCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhc-
Confidence 1112 36788888777775332211110 0010 022222110 101111 11 46677777421
Q ss_pred cCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCccc----cccccCccEEEEcCcccCc
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIKI----DVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~~----~~~~~~~d~~~~s~~K~l~ 256 (452)
..+++++|+++......|.+.| +++|.++|++||+ ++|+|+++ ++|-... +.....+|+++++ |.+.
T Consensus 257 -~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~-lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~lg 332 (504)
T PLN02760 257 -GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDI-LFIADEVICAFGRLGTMFGCDKYNIKPDLVSLA--KALS 332 (504)
T ss_pred -CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEecchhhCCcccchhhHHHhcCCCCcEEEec--cccc
Confidence 1356899999999888899988 9999999999999 89999998 5654321 2223358987776 9886
Q ss_pred CCC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 257 CPP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 257 g~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
|+. .+|.+++++++.+. + .+.. . .........++.+ +..+..+..++++.+.+ +.+.++++++.++|+
T Consensus 333 gG~~PigAv~~~~~i~d~-~-~~~~-~-~~~~~~h~~T~~g--nPl~~Aaala~Le~i~~-----~~l~~~~~~~g~~l~ 401 (504)
T PLN02760 333 SAYMPIGAVLVSPEISDV-I-HSQS-N-KLGSFAHGFTYSG--HPVSCAVALEALKIYKE-----RNIPEHVNKIAPRFQ 401 (504)
T ss_pred CCccccceEeecHHHHhh-h-hccc-c-cccCcccCCCCCC--CHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHH
Confidence 642 36778888887764 2 1100 0 0000001111222 22233333445555543 356888899999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCCh-----hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE-----DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
+.|.++....++......+.++.+.+.+.....+. .-...+.+.+.+ .||.+..
T Consensus 402 ~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~-------------------- 460 (504)
T PLN02760 402 DGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKK-RGMLVRV-------------------- 460 (504)
T ss_pred HHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHh-CCcEEEe--------------------
Confidence 99987633333333333456666655321010000 014557777766 4999842
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+..+|+++....|++||+++++++.+++..
T Consensus 461 -~g~~lrl~Ppl~it~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 461 -AGDNIMMSPPLIITPEEVDELISIYGKALKA 491 (504)
T ss_pred -cCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1247999999888999999999999998864
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-17 Score=160.58 Aligned_cols=352 Identities=11% Similarity=0.121 Sum_probs=210.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+..... .... ....+...++.++|++++..+ .+.+.|++||++|++.++. ++|.++...
T Consensus 62 ~lGh~~p~v~~ai~~ql~~l~~-~~~~--~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~Alk-lAr~~~~~~ 136 (445)
T PRK09221 62 NAGHGRPEIVEAVARQAATLDY-APAF--QMGHPLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALK-IALAYHRAR 136 (445)
T ss_pred cCCCCCHHHHHHHHHHHHhccC-cccc--ccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHH-HHHHHHHhc
Confidence 3567888899999988765311 1111 112344567888888887542 4689999999999999998 445443111
Q ss_pred CC-CCCEEEEeCCcchhHHHHHHHHHH----h--cC---cEEEEEeCCC--C---CC----ChH-HHHHHHHHHHhcccc
Q 012991 127 FH-RNDTVLMLHCAFQAVKKSIQAYVT----R--AG---GSVVEVQLPF--P---LA----SEE-EIINEFKKGIEKGKK 186 (452)
Q Consensus 127 ~~-~g~~Vl~~~~~~~s~~~~~~~~a~----~--~g---~~v~~~~~~~--~---~~----~~~-~~~~~l~~~i~~~~~ 186 (452)
-+ ...+|+....+|++.......+.. + .+ ..+..++.+. + .. ... ...+++++.+++..
T Consensus 137 g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~- 215 (445)
T PRK09221 137 GQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHD- 215 (445)
T ss_pred CCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcC-
Confidence 11 245888888888875433211100 0 00 1122332210 0 00 001 11567777775421
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc--c--ccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI--K--IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~--~--~~~~~~~~d~~~~s~~K~l~g 257 (452)
.+++.+|+++......|.+.| +++|.++|++||+ ++|+|++++ +|-. . .+.....+|+++++ |.+.|
T Consensus 216 -~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~-llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~g--K~l~g 291 (445)
T PRK09221 216 -ASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGI-LLIFDEVITGFGRLGAAFAAERFGVTPDIITFA--KGLTN 291 (445)
T ss_pred -CCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeehhhCCCcCchhhHHHhcCCCCCEEEec--ccccc
Confidence 257899999999999999988 9999999999999 899999984 5432 1 22223357988776 87654
Q ss_pred C-CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 P-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+ ..+|.+++++++.+. +.... ..........++.+ +.....+..++++.+.+ +.+.++.+++.+++++
T Consensus 292 G~~Pi~av~~~~~i~~~-~~~~~---~~~~~~~~~~T~~~--~pl~~aaa~a~L~~i~~-----~~l~~~~~~~g~~l~~ 360 (445)
T PRK09221 292 GAIPMGAVIASDEIYDA-FMQGP---EYAIEFFHGYTYSA--HPVACAAGLATLDIYRE-----EDLFERAAELAPYFED 360 (445)
T ss_pred CcccceeeEEcHHHHHh-hccCc---ccccccccccCCCc--CHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHH
Confidence 3 236778888877664 21100 00000000111112 22223333345555553 2467889999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++.....+.+....+.+..+.+.... ........++.+.|.++ ||.+.. .++.+
T Consensus 361 ~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~-~~~~~~~~~~~~~~~~~-Gv~~~~---------------------~~~~l 417 (445)
T PRK09221 361 AVHSLKGLPHVIDIRNIGLVAGIELAPRP-GAPGARGYEAFMKCFEK-GLLVRY---------------------TGDTI 417 (445)
T ss_pred HHHhhccCCCEEEEecCceEEEEEEeccc-ccccchHHHHHHHHHHC-CeEEee---------------------cCCEE
Confidence 99876433322222223444444442100 00112345788888765 999852 12589
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++...|++||++++++|++.+.+
T Consensus 418 r~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 418 ALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998854
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-16 Score=159.83 Aligned_cols=352 Identities=12% Similarity=0.144 Sum_probs=210.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+....... .. ....+...++.+++++++... .+.+.|+++||+|++.++. ++|.|....
T Consensus 59 ~lGh~~p~v~~ai~~ql~~l~~~~-~~--~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk-lAr~~~~~~ 133 (442)
T PRK13360 59 NAGHGRPEIVEAVRAQAGELDYAP-AF--QMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALK-IALAYHRAR 133 (442)
T ss_pred ccCCCCHHHHHHHHHHHHhCCCcc-cC--CcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHH-HHHHHHHhc
Confidence 347788889999998886532111 11 112344567888888887532 4689999999999999988 445442111
Q ss_pred CC-CCCEEEEeCCcchhHHHHHHHHH----Hhc--C---cEEEEEeCCCC-----CC----ChHH-HHHHHHHHHhcccc
Q 012991 127 FH-RNDTVLMLHCAFQAVKKSIQAYV----TRA--G---GSVVEVQLPFP-----LA----SEEE-IINEFKKGIEKGKK 186 (452)
Q Consensus 127 ~~-~g~~Vl~~~~~~~s~~~~~~~~a----~~~--g---~~v~~~~~~~~-----~~----~~~~-~~~~l~~~i~~~~~ 186 (452)
-. .+.+|+....+|++.......+. .+. + ..+..++.+.. .. .... ..+.+++.++..
T Consensus 134 g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~-- 211 (442)
T PRK13360 134 GEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH-- 211 (442)
T ss_pred CCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc--
Confidence 11 24589998888888543221110 000 1 11223332100 00 0111 256788888532
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCcc----ccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
...++.+|+++......|.+.| +++|.++|++||+ ++|+|+++ ++|-.. .+.....+|+++++ |.+.|
T Consensus 212 ~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~-llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~g--K~l~g 288 (442)
T PRK13360 212 DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGI-LLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCA--KGLTN 288 (442)
T ss_pred CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCCCccchhhhhcCCCCceeeee--ecccc
Confidence 1357899999999999999988 9999999999999 89999998 555432 12223457888664 98765
Q ss_pred C-CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 P-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+ ..+|.+++++++.+. +..... .+.......++ +.+.....+..++++.+.+ +.+.++.+++.+++.+
T Consensus 289 G~~P~gav~~~~~i~~~-~~~~~~---~~~~~~~~~T~--~g~pl~~aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~ 357 (442)
T PRK13360 289 GAIPMGAVFVSSEIHDA-FMQGPE---AGIEFFHGYTY--SGHPLACAAALATLDLYER-----EGLLTRAARLAPYWED 357 (442)
T ss_pred CccceEEEEEcHHHHHH-hhcCCc---cccccccCCCC--CCCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 3 236777888877654 211000 00000001111 1233334445556666654 2467788889999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++.......+....+.+..+.+..... .....+.++...|.++ ||.+.. .++.+
T Consensus 358 ~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~-~~~~~~~~~~~~l~~~-Gvl~~~---------------------~~~~l 414 (442)
T PRK13360 358 ALHSLRDAPHVIDIRNLGLVGAVELAPRDG-KPGKRAYEVFLKCFEK-GLMIRY---------------------TGDIL 414 (442)
T ss_pred HHHHhhcCCCeeeeeccceEEEEEEecCCC-CcchhHHHHHHHHHHC-CcEEEe---------------------cCCEE
Confidence 988763332222222223333333321000 0112345677777664 999842 12579
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++...|++||++++++|.+.+++
T Consensus 415 r~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 415 ALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred EEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998853
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=160.00 Aligned_cols=345 Identities=12% Similarity=0.117 Sum_probs=208.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.|.+++.+.+......+... ...+...++.++|+++++.. .+.++|++||++|+..++. ++|.+
T Consensus 56 ~lGh~~p~v~~a~~~q~~~~~~~~~~~---~~~~~~~~la~~L~~~~~~~-~~~v~f~~SGseA~e~Alk-lAr~~---- 126 (433)
T PRK08117 56 NVGHRHPKVVQAIKEQADKLMHGPSGV---IYYESILKLAEELAEITPGG-LDCFFFSNSGAEAIEGALK-LAKHV---- 126 (433)
T ss_pred cCCCCCHHHHHHHHHHHHhccCccccc---cCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHH-HHHHh----
Confidence 345677889999999886542111111 12455688889999988432 4689999999999999998 55544
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHH----h-cC-----cEEEEEeCCCCC------C-ChH--HHHHHHHHHHhccccC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVT----R-AG-----GSVVEVQLPFPL------A-SEE--EIINEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~----~-~g-----~~v~~~~~~~~~------~-~~~--~~~~~l~~~i~~~~~~ 187 (452)
....+|+..+..||+.......+.. . .+ ..+..++.+... . ... ...+.+++.+++.. .
T Consensus 127 -tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 204 (433)
T PRK08117 127 -TKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQV-T 204 (433)
T ss_pred -cCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhcc-C
Confidence 3356788888777774433211100 0 00 112233321100 0 011 12566777765311 1
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCcc--c--cccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIK--I--DVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~--~--~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++++|+++......|.+.| +++|.++|++||+ ++|+|++|+. |-.. + ......+|++ +++|.+.++
T Consensus 205 ~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEv~tG~gr~G~~~~~~~~gv~pDi~--t~sK~lg~G 281 (433)
T PRK08117 205 PEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGI-LLIFDEVQTGFGRTGEWFAAQTFGVVPDIM--TIAKGIASG 281 (433)
T ss_pred CCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCC-EEEEecchhccCccccchhHhhcCCCCCEe--ehhhhccCC
Confidence 357899999999999999988 9999999999999 8999999872 1111 1 1112346764 566987654
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
.-+|+++.++++.+. + ... . .+ . +...+.....+..++++.+.+ +.+.++++++.+++.+.|
T Consensus 282 ~pigav~~~~~i~~~-~-~~~-~--~~------~--T~~~np~~~aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~~L 343 (433)
T PRK08117 282 LPLSAVVASKELMEQ-W-PLG-S--HG------T--TFGGNPVACAAALATLEVIKE-----EKLLDNANEMGAYALERL 343 (433)
T ss_pred CcceeEEEcHHHHhh-c-cCC-C--CC------C--CCCcCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHH
Confidence 447888888887765 2 111 0 00 0 012233334444455555542 346777888888888888
Q ss_pred HHHcC-CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 339 ANAWG-TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 339 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
.++.. ..+.......+.++.+.+.+.....+......+.+.+.+ .||.+.... ...+.+|
T Consensus 344 ~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~g------------------~~~~~lR 404 (433)
T PRK08117 344 EVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLE-KGLLFYLCG------------------NAGNVLR 404 (433)
T ss_pred HHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHH-CCCEEeecC------------------CCCCEEE
Confidence 77521 222222222344555555211110112234567777766 499874211 1246899
Q ss_pred ecccccCCHHHHHHHHHHHHHHHhc
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++..+|++||++++++|.+++++
T Consensus 405 l~p~~~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 405 MIPPLTVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred EeCCccCCHHHHHHHHHHHHHHHHH
Confidence 9998889999999999999998864
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-16 Score=158.36 Aligned_cols=345 Identities=11% Similarity=0.075 Sum_probs=212.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... .... .....+...++.+++++.++.. .+.+.|++|||+|++.++.. +|.+
T Consensus 66 ~lGh~~p~i~~Ai~~ql~~~~-~~~~--~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEA~e~Alkl-Ar~~---- 136 (457)
T PRK05639 66 STGYSHPKLVKAVQEQVALIQ-HSMI--GYTHSERAIRVAEKLAEISPIE-NPKVLFGLSGSDAVDMAIKV-SKFS---- 136 (457)
T ss_pred ccCCCCHHHHHHHHHHHHhcc-cccc--CccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHH-HHHh----
Confidence 356777889999998876531 1111 1112345567888888887643 36899999999999999984 4443
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh-----cC-----cEEEEEeCCCCC----------CChH--H-HHHHHHHHHhc
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR-----AG-----GSVVEVQLPFPL----------ASEE--E-IINEFKKGIEK 183 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~-----~g-----~~v~~~~~~~~~----------~~~~--~-~~~~l~~~i~~ 183 (452)
..+.+|+....+|++.......+... .+ ..+..++.+.+. +.+. . ..+.+++.+..
T Consensus 137 -tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 215 (457)
T PRK05639 137 -TRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFS 215 (457)
T ss_pred -cCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 34568888888888865443322110 11 123344332110 0001 1 13456665532
Q ss_pred cccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCccc
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~ 254 (452)
.....+++++|+++......|.+.| +++|.++|++||+ ++|+|++++ +|-.. .+.....+|++++ .|.
T Consensus 216 ~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~-llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~--gK~ 292 (457)
T PRK05639 216 HVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGI-LLVMDEVQTGIGRTGKWFASEWFEVKPDLIIF--GKG 292 (457)
T ss_pred hhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhhccCcCchHHHHHhcCCCCCEEEe--chh
Confidence 1111467999999998888888765 7789999999999 899999986 32221 1222346899985 599
Q ss_pred CcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 255 FFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 255 l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
+.|+.++|++++++++.+. ..... + .++.+ +.....+..++++.+.+ +.+.++.+++.++|
T Consensus 293 l~gG~pi~av~~~~~i~~~-~~~~~-----~------~T~~g--~p~~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l 353 (457)
T PRK05639 293 VASGMGLSGVIGRKELMDL-TSGSA-----L------LTPAA--NPVISAAAEATLEIIEE-----ENLLKNALKVGEFI 353 (457)
T ss_pred hcCCCcceeEEehHHHHhh-cCCCc-----c------cCCCc--CHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHH
Confidence 8876778999998887763 11011 0 11112 22223334445555553 34567778888999
Q ss_pred HHHHHHHc-CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 335 ARMLANAW-GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 335 ~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.+.|.++. ...++......+.++.+.+-......+......+.+.+.++ |+.+.... ..+
T Consensus 354 ~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~g------------------~~~ 414 (457)
T PRK05639 354 KKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFEL-GLILPSYG------------------MFG 414 (457)
T ss_pred HHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhC-CeEEeecC------------------CCC
Confidence 98888752 23333333334556665542100011112245677777764 99985321 124
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+|+.+....|++|++.++++|++.++.
T Consensus 415 ~~lr~~Ppl~it~~~id~~~~~l~~~l~~ 443 (457)
T PRK05639 415 NVIRITPPLVITKEIAEKGLEIMERAIKD 443 (457)
T ss_pred CEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999864
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-16 Score=156.01 Aligned_cols=326 Identities=11% Similarity=0.086 Sum_probs=204.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... ..... ...+...++.+.+++..+. +.++|+++||+|++.++. ++|.+....
T Consensus 28 ~lGh~~p~v~~ai~~q~~~~~-~~~~~---~~~~~~~~la~~l~~~~~~---~~v~f~~sGseA~e~Alk-lAr~~~~~~ 99 (382)
T PLN00144 28 ALGHGDPDWVKAVAEQAGTLA-HVSNV---YHTIPQVELAKRLVASSFA---DRVFFCNSGTEANEAAIK-FARKYQRVR 99 (382)
T ss_pred cCCCCCHHHHHHHHHHHHhcC-Ccccc---ccCHHHHHHHHHHHhcCCC---CeEEEeCCcHHHHHHHHH-HHHHHHhcc
Confidence 456778889999999887532 11111 1134456677777776543 599999999999999998 445543211
Q ss_pred CC--C------CCEEEEeCCcchhHHHHHHHHHHhcCc---------EEEEEeCCCCCCChHHHHHHHHHHHhccccCCC
Q 012991 127 FH--R------NDTVLMLHCAFQAVKKSIQAYVTRAGG---------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK 189 (452)
Q Consensus 127 ~~--~------g~~Vl~~~~~~~s~~~~~~~~a~~~g~---------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 189 (452)
.. + +.+|+....+|++.......+...... .+..+ +..+ ++.+++.++ ..
T Consensus 100 ~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~~~-----~~ 166 (382)
T PLN00144 100 APDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFV----EYGN----LEAARKLIQ-----KG 166 (382)
T ss_pred CCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEe----CCCC----HHHHHHhcC-----CC
Confidence 11 1 357999888888865443221110000 11222 1111 577887774 35
Q ss_pred ceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCCCC
Q 012991 190 MIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
++++|+++..+++.|...+ +++|.++|++||+ ++|+|++++ +|-. +.+.....+|++++ +|.+.+...
T Consensus 167 ~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~-llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~--sK~l~~G~p 243 (382)
T PLN00144 167 KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGA-LLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTL--AKPLAGGLP 243 (382)
T ss_pred CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCccchHhhhhhcCCCCCEEEe--cccccCCcc
Confidence 7889999888888555432 7789999999999 899999976 3222 11244456885555 598876555
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|++++++++.+. + .+.. ...+ ...+.....+..++++++.+ ..+.++++++.+++.+.|.+
T Consensus 244 ig~v~~~~~~~~~-~-~~~~---------~~~T--~~~~pl~~aaa~a~l~~i~~-----~~~~~~~~~~g~~l~~~l~~ 305 (382)
T PLN00144 244 IGAVLVTEKVASA-I-NPGD---------HGST--FAGGPLVCNAALAVLDKISK-----PGFLASVAKKGEYLRELLRR 305 (382)
T ss_pred eEEEEEcHHHHhc-c-CCCC---------CCCC--CCCCHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHH
Confidence 8999998888765 2 1110 0111 12222233444455677663 33466677777777777665
Q ss_pred Hc-CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 341 AW-GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 341 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
+. ...........+.++++.+. .+...+.+.+.++ ||.+... ...+.+|++
T Consensus 306 ~~~~~~~~~~vrg~G~~~~l~l~--------~~~~~~~~~~~~~-Gv~i~~~-------------------~~~~~lrl~ 357 (382)
T PLN00144 306 KLGGNPHVKEVRGVGLLVGIQLD--------VPAGPLVDACRDS-GLLVLTA-------------------GKGDVVRLV 357 (382)
T ss_pred HHhhCCCceeeecCceEEEEEec--------CccHHHHHHHHHC-CeEEeec-------------------CCCCEEEEe
Confidence 42 22122222224778888772 2345788888764 9998532 113689999
Q ss_pred ccccCCHHHHHHHHHHHHHHHhc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++...+++|++.+++.|.+++..
T Consensus 358 p~~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 358 PPLVISEAELEQAVEILADCLPA 380 (382)
T ss_pred CCCccCHHHHHHHHHHHHHHHHh
Confidence 99877899999999999998864
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-16 Score=158.44 Aligned_cols=342 Identities=15% Similarity=0.190 Sum_probs=208.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.|.+++.+.+.... ... +.....+...++.+++++.++....+.++|+++|++|++.++. ++|.+
T Consensus 69 ~lGh~~p~v~~ai~~q~~~~~-~~~--~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk-lAr~~---- 140 (443)
T PRK06058 69 SVGNSAPRVVEAVREQVARFT-HTC--FMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVK-IARSY---- 140 (443)
T ss_pred ccCCCCHHHHHHHHHHHHhcc-Ccc--ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHH-HHHHh----
Confidence 356778889999999886531 111 1112245566788888888753212589999999999999998 44444
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHH-----hcC-----cEEEEEeCCCCCCCh--------H---HHHHHHHHHHhccc
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVT-----RAG-----GSVVEVQLPFPLASE--------E---EIINEFKKGIEKGK 185 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~-----~~g-----~~v~~~~~~~~~~~~--------~---~~~~~l~~~i~~~~ 185 (452)
..+++|+....+|++.......+.. +.+ ..+..++.+.+.++. . ...+.+++.+.
T Consensus 141 -tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 216 (443)
T PRK06058 141 -TGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG--- 216 (443)
T ss_pred -hCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhC---
Confidence 3457899999999887544332211 001 112223221111110 0 01333444442
Q ss_pred cCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCc
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~ 256 (452)
.+++++|+++......|.+.| +++|.++|++||+ ++|.|+++. +|-.. .+.....+|+++++ |.+.
T Consensus 217 --~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gi-llI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~g--K~l~ 291 (443)
T PRK06058 217 --ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGV-VFIADEVQTGFARTGAWFACEHEGIVPDLITTA--KGIA 291 (443)
T ss_pred --CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcChhhhHHHhcCCCCCEEEEc--cccc
Confidence 367899999888777787765 8899999999999 899999975 33221 12223458998886 9887
Q ss_pred CCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 257 CPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 257 g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
|+..+|++++++++.+. + .+.. ...+ ...+..+..+..++++.+.+ +.+.++.+++.+++.+
T Consensus 292 ~G~Pi~av~~~~~i~~~-~-~~~~---------~~~T--~~gnpl~~aaa~a~L~~~~~-----~~l~~~~~~~g~~l~~ 353 (443)
T PRK06058 292 GGLPLSAVTGRAEIMDA-P-HPGG---------LGGT--YGGNPVACAAALAAIETIEE-----DDLVARARQIEALMTD 353 (443)
T ss_pred CCCccEEEEEcHHHHhh-c-cCCC---------CCCC--CCCCHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHH
Confidence 65558999998887764 2 1110 0011 12222333444445555543 3567888888999999
Q ss_pred HHHHHcC-CCcCCCcccccceEEEEcCC-ccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 337 MLANAWG-TSLGSPPEICAAMVMVGLPS-RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 337 ~L~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.|.++.. ..++......+.++.+.+.. .....+..-...+.+.+.++ ||.+.... ..++
T Consensus 354 ~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~~~~~~------------------~~~~ 414 (443)
T PRK06058 354 RLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAA-GVIVLTCG------------------TYGN 414 (443)
T ss_pred HHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHC-CeEEeccC------------------CCCC
Confidence 9987632 23322222335565555521 00001111245677777664 99985321 1136
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++|+.++...|++||+.++++|++++++
T Consensus 415 ~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 415 VIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 8999998889999999999999998753
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-16 Score=156.18 Aligned_cols=342 Identities=11% Similarity=0.142 Sum_probs=211.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.+.+++.+.+.... .. .+.....+...++.+++++++...+.+.++|++|||+|++.++.. +|.+
T Consensus 54 lGh~~p~v~~ai~~ql~~~~-~~--~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~Alkl-Ar~~----- 124 (421)
T PRK09792 54 TGHRHPDLVAAVEQQLQQFT-HT--AYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKI-ARAH----- 124 (421)
T ss_pred CCCCCHHHHHHHHHHHHhcc-Cc--ccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHH-HHHh-----
Confidence 46777889999999876531 11 111122344566777788876532236899999999999999984 4433
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHH-----hcC-----cEEEEEeCCCCCCCh----HHHHHHHHHHHhccccCCCceEE
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVT-----RAG-----GSVVEVQLPFPLASE----EEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~-----~~g-----~~v~~~~~~~~~~~~----~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
..+.+|+....+|++.......+.. +.+ ..+..++. |.+.. ....+.+++.+++.. ..+++++
T Consensus 125 tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~--p~~~~~~~~~~~~~~l~~~~~~~~-~~~~iaa 201 (421)
T PRK09792 125 TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPY--PSDLHGISTQDSLDAIERLFKSDI-EAKQVAA 201 (421)
T ss_pred cCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCC--CcccccccHHHHHHHHHHHHHhcc-CCCceEE
Confidence 3446899888888886544332211 001 01233333 21111 112577787775310 1357899
Q ss_pred EEEeccCCCCcccc-c---HHHHHHHHHHcCCCEEEEecccc-cCCcc--cccc--ccCccEEEEcCcccCcCCCCcEEE
Q 012991 194 AIIDHITSMPCVVI-P---VRKLVKICRDEGVDQVFVDAAHA-MGSIK--IDVK--EIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 194 v~~~~~~n~tG~~~-~---l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~~~~--~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
|+++..++++|... | +++|.++|++||+ ++|+|++++ +|-.. +... ...+|++++ +|.+.++..+|++
T Consensus 202 vi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~--gK~l~~G~pigav 278 (421)
T PRK09792 202 IIFEPVQGEGGFNVAPKELVAAIRRLCDEHGI-VMIADEVQSGFARTGKLFAMDHYADKPDLMTM--AKSLAGGMPLSGV 278 (421)
T ss_pred EEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCCCCchhHHHhcCCCCcEEEe--ehhhcCCCceEEE
Confidence 99999999999865 6 7899999999999 899999976 32221 1111 235786555 5988765558999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG- 343 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~- 343 (452)
++++++.+. + .+.. ...+ ...+.....+..+.++++.+ +.+.++.+++.+++.+.|..+..
T Consensus 279 ~~~~~i~~~-~-~~~~---------~~~T--~~gnpl~~aaa~a~l~~l~~-----~~~~~~~~~~g~~l~~~l~~l~~~ 340 (421)
T PRK09792 279 VGNANIMDA-P-APGG---------LGGT--YAGNPLAVAAAHAVLNIIDK-----ESLCERANQLGQRLKNTLIDAKES 340 (421)
T ss_pred EEcHHHHhc-c-CCCC---------cCCC--CCCCHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 998887765 2 1110 0011 11222233344455666654 24566777888888887766521
Q ss_pred CCcCCCcccccceEEEEcCCccc-cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLR-VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
...+......+.++++.+++... ..+......+.+.+.++ ||.+.. . +..++.+|+.++.
T Consensus 341 ~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~---~---------------g~~~~~irl~P~l 401 (421)
T PRK09792 341 VPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQ-GLLLLT---C---------------GAYGNVIRFLYPL 401 (421)
T ss_pred CCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHC-CcEEee---c---------------CCCCCEEEEeCCC
Confidence 22233333447788888753100 00112456788888764 999831 1 1224789999998
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q 012991 423 YNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~~ 441 (452)
..+++||++++++|.+++.
T Consensus 402 ~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 402 TIPDAQFDAAMKILQDALS 420 (421)
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 8899999999999998874
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-17 Score=165.54 Aligned_cols=310 Identities=10% Similarity=0.028 Sum_probs=211.9
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
.......++++..|+.||++ ...++++|+|.++..++.++ +++||.|++++.+|.|++.++.. .|+
T Consensus 192 ~~~G~i~eAe~~aA~~fgAd--~tyfvvNGTS~~n~av~~a~--------~~~Gd~VLvdRN~HKSv~~aLil----sga 257 (713)
T PRK15399 192 DHTGPHLEAEEYIARTFGAE--QSYIVTNGTSTSNKIVGMYA--------APAGSTLLIDRNCHKSLAHLLMM----SDV 257 (713)
T ss_pred CCChHHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHHHh--------cCCCCEEEeecccHHHHHHHHHH----cCC
Confidence 34556899999999999996 77888999999999999987 69999999999999999887655 599
Q ss_pred EEEEEeCCCCCCChH--------HH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEe
Q 012991 157 SVVEVQLPFPLASEE--------EI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 157 ~v~~~~~~~~~~~~~--------~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD 227 (452)
.++++.+.. +..+ .+ .+.+++.|++.++ ..+|+.++++++++ .|.++++++|+++| |++++++|
T Consensus 258 ~PVYl~P~~--n~~Gi~g~I~~~~~~~e~I~~~i~~~p~-~~~p~~vvit~pTY-dGi~yd~~~I~~~~---g~~~ilvD 330 (713)
T PRK15399 258 VPIWLKPTR--NALGILGGIPRREFTRDSIEEKVAATTQ-AQWPVHAVITNSTY-DGLLYNTDWIKQTL---DVPSIHFD 330 (713)
T ss_pred eeEEecccc--cccCCcCCCChhhccHHHHHHHHHhCCC-cCCceEEEEECCCC-CceeeCHHHHHHHh---CCCEEEEe
Confidence 999997532 2222 11 3888999987542 24567899998865 79999999999999 78334799
Q ss_pred ccccc--CCcc-c-ccccc----CccEE---EEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCccccccccc
Q 012991 228 AAHAM--GSIK-I-DVKEI----GADFY---VSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIG 296 (452)
Q Consensus 228 ~a~~~--g~~~-~-~~~~~----~~d~~---~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (452)
+||+. ...+ + +...+ ++|.+ +.|.||.+.+....+++.++..+-...+... .....+.
T Consensus 331 EAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a-----------~~m~~ST 399 (713)
T PRK15399 331 SAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEA-----------FMMHTST 399 (713)
T ss_pred ccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHH-----------HHHHcCC
Confidence 99863 1111 1 11111 46766 9999999989988899888664221111111 1223357
Q ss_pred ccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC------CCcCCCcc----c--------c-----
Q 012991 297 TRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG------TSLGSPPE----I--------C----- 353 (452)
Q Consensus 297 ~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~~----~--------~----- 353 (452)
+|++..++++..+..++... .| +.+.+...+++..+++.+.++.+ +++..++. . .
T Consensus 400 SPsY~LmASLD~a~~~m~~~-~G-~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~ 477 (713)
T PRK15399 400 SPSYPIVASVETAAAMLRGN-PG-KRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFK 477 (713)
T ss_pred CcHHHHHHHHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCccccccc
Confidence 88998888888888888731 14 45666677888888888877644 33333210 0 0
Q ss_pred ----------cceEEEEcCCcc--c--cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 354 ----------AAMVMVGLPSRL--R--VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 354 ----------~~~~~~~~~~~~--~--~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
..=+.+..|... + ...+.++..+.+.|++ +||.+-.. ....+-+-
T Consensus 478 ~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e-~gI~~E~~--------------------d~~~vL~l 536 (713)
T PRK15399 478 DADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDE-RGIVVEKT--------------------GPYNLLFL 536 (713)
T ss_pred ccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHH-cCCEEEec--------------------CCCeEEEE
Confidence 000112222100 0 0235678889999965 69998422 22456666
Q ss_pred ccccCCHHHHHHHHHHHHHHHh
Q 012991 420 HQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++..+|.+++++|+++|.++-+
T Consensus 537 ~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 537 FSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred eCCCCCHHHHHHHHHHHHHHHH
Confidence 6666799999999999998754
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-16 Score=165.46 Aligned_cols=355 Identities=16% Similarity=0.147 Sum_probs=239.2
Q ss_pred CCCCHHHHHhhhcc---CCCCe-EEeccCCCC-CCcHHHHHHHHHHHHHHhc-CCchh-hhhhhhHHHHHHHHHHHhHhC
Q 012991 22 RCISEAEIRDEFSH---HQHGV-ARINNGSFG-SCPKSVLADQQKWQLKFLQ-QPDDF-YFNSLRKGILESRAAVKDLIN 94 (452)
Q Consensus 22 ~~~~~~~ir~~~~~---~~~~~-~~l~~~~~~-~~p~~v~e~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~la~~~~ 94 (452)
..++..++.++|.. .+..+ -|++.|.++ ..|+.+.+.+.+.-..+.. .|-.. .+.+..+.+-+.++.++++.|
T Consensus 44 ~~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtG 123 (939)
T TIGR00461 44 APSKEYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTG 123 (939)
T ss_pred CCCCHHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHC
Confidence 34566666666543 22222 366777766 4555455455443221111 11110 234556678889999999999
Q ss_pred CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHH
Q 012991 95 ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEII 174 (452)
Q Consensus 95 ~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 174 (452)
.+ ..+.-+..++|++-+.++.+.... .+++++|++++..|+.....+.-.++..|++++.++ .
T Consensus 124 m~-~aNaSl~d~atA~aEa~~~a~~~~-----~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~-----------~ 186 (939)
T TIGR00461 124 LP-VANASLLDEGTAAAEAMALSFNVS-----KKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD-----------C 186 (939)
T ss_pred CC-hhhhhccchhhHHHHHHHHHHHhh-----cCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc-----------H
Confidence 96 778888999998888777765210 123579999999999998888877888999999882 2
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCccc
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 254 (452)
++|++.+ ++..|++++|++ .|.+.|+++|++++|++|. ++++++-.-......+...+|+|+++.+.+++
T Consensus 187 ~~l~~~~--------~~~~v~~q~Pn~-~G~ied~~~i~~~~h~~ga-l~~~~ad~~al~ll~~Pge~GaDi~vg~~q~f 256 (939)
T TIGR00461 187 SDIKKAV--------DVFGCLLQYPAT-DGSILDYKQLIDALHSHKS-LVSVAADLMALTLLTPPGHYGADIVLGSSQRF 256 (939)
T ss_pred HHHhhcC--------CEEEEEEECCCC-CeEEecHHHHHHHHHHcCC-EEEEEechHHhCCcCCHHHcCCcEEeeCCCcc
Confidence 3344333 467888888765 7999999999999999999 89997665555555677778999998888874
Q ss_pred Cc----CCCCcEEEEEecCccccCCCCCcee--ccC-CCC-ccc--------ccccccccCccccccHHH---H--HHHH
Q 012991 255 FF----CPPSVAFLYCRKSILSSDMHHPVVS--HEF-GNG-LPI--------ESAWIGTRDYSAQLVIPS---A--VTFV 313 (452)
Q Consensus 255 l~----g~~G~G~l~~~~~~~~~~l~~~~~~--~~~-~~~-~~~--------~~~~~~~~~~~~~~~~~~---a--l~~~ 313 (452)
-. |+++.|++.+++++..+ +-.+... .+. |.. +.. -+..-+++|+....++.+ + +.++
T Consensus 257 g~p~g~GGP~aG~~a~~~~l~r~-lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~ 335 (939)
T TIGR00461 257 GVPMGYGGPHAAFFAVKDEYNRK-MPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYH 335 (939)
T ss_pred CCCCCCCCCceeeeeecHhhHhh-CCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHH
Confidence 32 24448999999988876 3222222 111 111 111 112345666654444443 2 3344
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeeccc
Q 012991 314 SRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ 393 (452)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~ 393 (452)
.. +|++++.+++..++.++.+.|.+ .|+++..++- ..-+.+.++ ..++.++.+.+.++ ||.++.
T Consensus 336 G~--~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~~f--F~~~~v~~~-------~~~~~~i~~~~~~~-gi~l~~--- 399 (939)
T TIGR00461 336 GP--KGLKNIARRIHSLTSILANGLEN-DPHELINKTW--FDTLTVKVG-------NGISSELLKAAEEF-NINLRA--- 399 (939)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCc--cceEEEEeC-------CCCHHHHHHHHHHC-CCeeee---
Confidence 43 38899999999999999999988 4888776521 222333332 23577899998775 999753
Q ss_pred CCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 394 APKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
..++.+++|+..++|.+||+.+++++.
T Consensus 400 -----------------~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 400 -----------------VDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred -----------------cCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 123589999999999999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-17 Score=149.51 Aligned_cols=364 Identities=17% Similarity=0.156 Sum_probs=238.3
Q ss_pred HHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCchh-hh-hh-hhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPDDF-YF-NS-LRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 27 ~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~~~-~~-~~-~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
+-|.+|-..+.+++-.. ++-...+.+|.|++-..+.+-.+ .|+.. |+ .. -++...-++++..+.|+++ ++.+
T Consensus 30 ~ii~~Ek~RQ~~gieLI--aSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ld-p~kW 106 (477)
T KOG2467|consen 30 DIIEKEKERQKRGIELI--ASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLD-PEKW 106 (477)
T ss_pred HHHHHHHHhhhcceeEe--ecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCC-HHHC
Confidence 34444443333444333 35567788899999888876432 34332 22 22 2444556788889999996 6643
Q ss_pred ---EEecChhHHHHHHHHHhhcccccCCCCCCCEEEE---eCCcchhHHHHHHHHHHhcCcEEEEE-----eCCCCCC-C
Q 012991 102 ---SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLM---LHCAFQAVKKSIQAYVTRAGGSVVEV-----QLPFPLA-S 169 (452)
Q Consensus 102 ---~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~---~~~~~~s~~~~~~~~a~~~g~~v~~~-----~~~~~~~-~ 169 (452)
+..-||+.|+..+..++ ++|+++|+- ++..|-++...- .+.++..+ .++..++ +
T Consensus 107 GVNVQp~SGSPANfavYtal--------l~Ph~RiMGLDLP~GGHLsHGy~T------~~kkISa~SiyFeSmPYkv~~~ 172 (477)
T KOG2467|consen 107 GVNVQPYSGSPANFAVYTAL--------LKPHERIMGLDLPSGGHLSHGYQT------PTKKISATSIYFESMPYKVDPS 172 (477)
T ss_pred ceeeccCCCCchhhHHHhhh--------cCCCCeeeeccCCCCCcccccccc------CCceeeeeeeecccCceeeCCC
Confidence 34568889999999987 699999984 444554432211 12222222 2333445 3
Q ss_pred hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC-----ccccccccC
Q 012991 170 EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS-----IKIDVKEIG 243 (452)
Q Consensus 170 ~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~-----~~~~~~~~~ 243 (452)
.+.+ +|.||+... .-+|++++.- .+.....+|.+++.++|.+.|+ .++.|-||-.|. ++-.+. .
T Consensus 173 TG~IDYD~Le~~A~-----~frPk~iiaG--~SaY~R~~DYaR~R~Iad~~gA-~Lm~DMAHISgLVAA~vipsPFe--y 242 (477)
T KOG2467|consen 173 TGYIDYDKLEKTAT-----LFRPKLIIAG--TSAYSRLIDYARFRKIADKVGA-YLMADMAHISGLVAAGVIPSPFE--Y 242 (477)
T ss_pred CCceehHHHHHHHH-----hcCCcEEEec--cccchhhccHHHHHHHHHhcCc-eeehhhhhHHHHHhcccCCCccc--c
Confidence 4566 999999775 5789998884 4456778999999999999999 899999985543 333333 4
Q ss_pred ccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceec--cCCCCccccc----ccccccCccccccHHHHHHHHHHhh
Q 012991 244 ADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSH--EFGNGLPIES----AWIGTRDYSAQLVIPSAVTFVSRFE 317 (452)
Q Consensus 244 ~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~al~~~~~~~ 317 (452)
+|+|+.+.||+|.||+| |+++.|+.+... .+.... .|.....+++ ...|.|.-..+.+++.|+......
T Consensus 243 ~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~---~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tp- 317 (477)
T KOG2467|consen 243 CDIVTTTTHKSLRGPRG-AMIFYRKGVKSI---KPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP- 317 (477)
T ss_pred cceeeccccccccCCcc-eeEEEeccCCcC---CCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCH-
Confidence 79999999999999998 899998866653 111000 0110000000 112445555778888888887765
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCC
Q 012991 318 GGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397 (452)
Q Consensus 318 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~ 397 (452)
.++.+.+++.++++.|.+.|.+. |++++..... .+++.+.+.. .+++...+-..| +..+|.+.....++..
T Consensus 318 -efk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTD-nHlvLvDLr~-----~G~dGarvE~vl-e~~~I~~NKNtvpGD~ 388 (477)
T KOG2467|consen 318 -EFKEYQKQVLKNAKALASALISR-GYKLVTGGTD-NHLVLVDLRP-----KGVDGARVEKVL-ELCHIALNKNTVPGDK 388 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHc-CceEecCCcc-ceEEEEeccc-----cCCchHHHHHHH-HHhhhhhcCCcCCCCc
Confidence 78999999999999999999987 8887654322 5677776642 345554443333 3347777544444332
Q ss_pred CCCCCCCCCCCCCCccceEEecccccCC----HHHHHHHHHHHHHHHhc
Q 012991 398 DGQPQAGARDKDGIITGYARISHQVYNT----LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~iRis~~~~~t----~~di~~l~~~l~~~~~~ 442 (452)
+ ...++.|||+....+| ++|.+++.+.|.+.++-
T Consensus 389 S-----------al~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~i 426 (477)
T KOG2467|consen 389 S-----------ALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVKI 426 (477)
T ss_pred c-----------ccCCCceeccchhhcccCccHHHHHHHHHHHHHHHHH
Confidence 2 4678899999877766 68899999999888764
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=169.24 Aligned_cols=318 Identities=12% Similarity=0.062 Sum_probs=211.0
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHH-HHHHHHhc
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKS-IQAYVTRA 154 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~-~~~~a~~~ 154 (452)
...+..+.++++..|+.||++ ...++++|+|.+|..++.++ +++||.|++++.+|.|++.+ +.. .
T Consensus 170 ~~~eG~i~eAq~~AA~~fgAd--~tyFlvNGTS~gn~a~i~a~--------~~~Gd~VLvdRN~HKSv~hgaLiL----s 235 (720)
T PRK13578 170 LIHEGAAKDAQKHAAKVFNAD--KTYFVLNGTSASNKVVTNAL--------LTPGDLVLFDRNNHKSNHHGALIQ----A 235 (720)
T ss_pred CCCChHHHHHHHHHHHHhCCC--ceEEEeCChhHHHHHHHHHh--------cCCCCEEEeecccHHHHHHHHHHH----c
Confidence 344566899999999999996 78888999999999999987 69999999999999999885 544 5
Q ss_pred CcEEEEEeCCCCCCChH--------HH-HHHHHHHHhccc-c--CCCc-eEEEEEeccCCCCcccccHHHHHHH-HHHcC
Q 012991 155 GGSVVEVQLPFPLASEE--------EI-INEFKKGIEKGK-K--DGKM-IRLAIIDHITSMPCVVIPVRKLVKI-CRDEG 220 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~~--------~~-~~~l~~~i~~~~-~--~~~~-~~lv~~~~~~n~tG~~~~l~~i~~l-~~~~~ 220 (452)
|+.++++.+.. +..+ .+ .+.++++|++.. . ...+ .++++++++++ .|.++++++|+++ |+.++
T Consensus 236 Ga~PVYl~P~~--n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~ 312 (720)
T PRK13578 236 GATPVYLETAR--NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD 312 (720)
T ss_pred CCeEEEeeccc--cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC
Confidence 99999997532 2221 12 355888887641 1 0113 48999999876 7999999999998 67777
Q ss_pred CCEEEEecccccC--Ccc----c--cccccCcc----EEEEcCcccCcCCCCcEEEEEecCcccc---CCCCCceeccCC
Q 012991 221 VDQVFVDAAHAMG--SIK----I--DVKEIGAD----FYVSNLHKWFFCPPSVAFLYCRKSILSS---DMHHPVVSHEFG 285 (452)
Q Consensus 221 ~~~~ivD~a~~~g--~~~----~--~~~~~~~d----~~~~s~~K~l~g~~G~G~l~~~~~~~~~---~l~~~~~~~~~~ 285 (452)
. +++|+||+.= ..+ + ..-..++| +++.|.||.+.+....+++.++.+.+.. ++....+..
T Consensus 313 -~-llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~--- 387 (720)
T PRK13578 313 -Y-ILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNN--- 387 (720)
T ss_pred -c-EEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHH---
Confidence 3 8999998631 112 1 11234788 9999999998888888888887765431 000001000
Q ss_pred CCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH-HHHcCCCcCCCccc------------
Q 012991 286 NGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML-ANAWGTSLGSPPEI------------ 352 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~------------ 352 (452)
......+.+|++..++++..+..++... .| +.+.+...+++..+++.| ....++++..|+.-
T Consensus 388 ---al~m~qSTSPsY~LmASLDva~~~m~~~-~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~ 462 (720)
T PRK13578 388 ---AFMLHASTSPFYPLFAALDVNAKMHEGE-SG-RRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQ 462 (720)
T ss_pred ---HHHHHcCCChHHHHHHHHHHHHHHHHHh-hC-HHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhh
Confidence 0122335788888888888877777741 24 445566777788888887 55555554432100
Q ss_pred --------------c---------------cceEEEEcCCcc---c--cCChhhHHHHHHHHhhhcceEeeecccCCCCC
Q 012991 353 --------------C---------------AAMVMVGLPSRL---R--VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD 398 (452)
Q Consensus 353 --------------~---------------~~~~~~~~~~~~---~--~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~ 398 (452)
. ..=+.+..+... + ...+..+..+.+.|+++ ||.+-..
T Consensus 463 ~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~-gI~~E~~------- 534 (720)
T PRK13578 463 IASDLRFFSFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLREN-GIVPEKC------- 534 (720)
T ss_pred hcccccccccccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHc-CCEEEec-------
Confidence 0 000112222100 0 00122367899999776 9988422
Q ss_pred CCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 399 GQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 399 ~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
....+-+-++..+|.+++++|+++|.++.+
T Consensus 535 -------------d~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 535 -------------DLNSILFLLTPAEDMAKLQQLVAMLARFEK 564 (720)
T ss_pred -------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 123444444555799999999999998854
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-16 Score=155.42 Aligned_cols=345 Identities=12% Similarity=0.132 Sum_probs=205.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... ... +.....+...++.+++++++.....+.++|+++||+|++.++. ++|.+
T Consensus 46 ~lGh~~p~v~~a~~~ql~~~~-~~~--~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk-lAr~~---- 117 (420)
T TIGR00700 46 NIGHSHPRVVDAVRTQVAEFT-HTC--FMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVK-IARSY---- 117 (420)
T ss_pred cCCCCCHHHHHHHHHHHHhcc-Ccc--ccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHH-HHHHh----
Confidence 346777889999999886531 111 1112234456677778887753223689999999999999998 45544
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHH-----hcCc-----EEEEEeCCCCCC-------ChHH-HHHHHHHHHhccccCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVT-----RAGG-----SVVEVQLPFPLA-------SEEE-IINEFKKGIEKGKKDG 188 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~-----~~g~-----~v~~~~~~~~~~-------~~~~-~~~~l~~~i~~~~~~~ 188 (452)
..+.+|+....+|++.......+.. +.+. .+..++.+.+.. .... .++.+++.+... ...
T Consensus 118 -tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 195 (420)
T TIGR00700 118 -TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID-VGA 195 (420)
T ss_pred -cCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh-cCC
Confidence 3456788888888886544432211 0111 122233211100 0111 145666665311 114
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
+++.+|+++.....+|...+ +++|.++|++||+ ++|.|++++ +|... .+.....+|+++ ++|.+.++.
T Consensus 196 ~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gi-llI~DEV~tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~~G~ 272 (420)
T TIGR00700 196 NNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGI-VFIADEVQTGFARTGAMFACEHEGPEPDLIT--TAKSLADGL 272 (420)
T ss_pred CcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEEecccCCcccchhHHHhhcCCCCCEEE--eeccccCCc
Confidence 67999999999888998876 8899999999999 799999976 32221 122223578776 569876555
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
-+|++++++++.+. + .+.. ...+ ...+...+.+..++++.+.+ +.+.++..++.+++.+.|.
T Consensus 273 pig~v~~~~~i~~~-~-~~~~---------~~~T--~~~~pl~~aaa~a~l~~l~~-----~~~~~~~~~~g~~l~~~L~ 334 (420)
T TIGR00700 273 PLSGVTGRAEIMDA-P-APGG---------LGGT--YAGNPLACAAALAVLAIIES-----EGLIERARQIGRLVTDRLT 334 (420)
T ss_pred ceEEEEecHHHHhh-c-CCCC---------cCCC--CCcCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHH
Confidence 58999998887765 2 1110 0111 11222333444445666553 2356666777777777776
Q ss_pred HHcC-CCcCCCcccccceEEEEcCCcc-ccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 340 NAWG-TSLGSPPEICAAMVMVGLPSRL-RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 340 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
++.. ..........+.++++.+.+.. ...+......+.+.+.+ .||.+.++..+ ++++|
T Consensus 335 ~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~p~~~f------------------~~~lR 395 (420)
T TIGR00700 335 TLKAVDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHA-AGLLLLTCGMF------------------GNIIR 395 (420)
T ss_pred HHHhhCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHH-CCeEEeccCCC------------------CCEEE
Confidence 6522 1111111123667777652110 00112234566666655 59998543211 36899
Q ss_pred ecccccCCHHHHHHHHHHHHHHHh
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++++...++++++..+++|.+++.
T Consensus 396 l~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 396 FLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred EECCCCcCHHHHHHHHHHHHHHhh
Confidence 999876789999999999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-16 Score=158.05 Aligned_cols=357 Identities=11% Similarity=0.116 Sum_probs=212.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+....... . ....+...++.++|+++++.. +.++|++|||+|++.++. ++|.|+...
T Consensus 60 ~lGh~~p~v~~ai~~q~~~~~~~~-~---~~~~~~~~~lae~l~~~~~~~--~~v~f~~sGseA~e~Alk-lAr~~t~~~ 132 (451)
T PRK07678 60 NVGYGRKELAEAAYEQLKTLSYFP-L---TQSHEPAIKLAEKLNEWLGGE--YVIFFSNSGSEANETAFK-IARQYHAQK 132 (451)
T ss_pred cCCCCCHHHHHHHHHHHHhcCccc-c---ccCCHHHHHHHHHHHHhCCCC--CEEEEeCCcHHHHHHHHH-HHHHHHHhc
Confidence 346777889999998876532111 1 112344567888888887653 589999999999999998 555553211
Q ss_pred CCC-CCEEEEeCCcchhHHHHHHHHHHhc---------CcEEEEEeCCC----CCC---ChHHH--HHHHHHHHhccccC
Q 012991 127 FHR-NDTVLMLHCAFQAVKKSIQAYVTRA---------GGSVVEVQLPF----PLA---SEEEI--INEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~~~-g~~Vl~~~~~~~s~~~~~~~~a~~~---------g~~v~~~~~~~----~~~---~~~~~--~~~l~~~i~~~~~~ 187 (452)
-++ ..+|+.....|++.......+.... ...+..++.+. +.. +.... .+.+++.++.. .
T Consensus 133 g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~ 210 (451)
T PRK07678 133 GEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWE--L 210 (451)
T ss_pred CCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhc--C
Confidence 112 3688888888888554332211000 01122232210 000 01111 55677777521 1
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCcc----ccccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIK----IDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~----~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++.+|+++......|.+.| ++++.++|++||+ ++|+|+++ ++|-.. .+.....+|+++++ |.+.|+
T Consensus 211 ~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~-llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~g--K~lggG 287 (451)
T PRK07678 211 SETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGA-LLISDEVICGFGRTGKAFGFMNYGVKPDIITMA--KGITSA 287 (451)
T ss_pred CCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeehhhcCCcCchhHHHHhcCCCCCEEEee--cccccC
Confidence 467999999988887888876 7899999999999 99999998 454432 22223458999886 988765
Q ss_pred -CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 259 -PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 259 -~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
..+|.+++++++.+. + .+... . .......++ ..+..+..+..++++.+.+ +.+.++.+++.++|.+.
T Consensus 288 ~~Pi~av~~~~~i~~~-~-~~~~~--~-~~~~h~~T~--~gnp~~~aaa~a~l~~l~~-----~~~~~~~~~~g~~l~~~ 355 (451)
T PRK07678 288 YLPLSATAVKKEIYEA-F-KGKGE--Y-EHFRHVNTF--GGNPAACALALKNLEIMEN-----ENLIERSAQLGELLLEQ 355 (451)
T ss_pred CcceeEEEEcHHHHHH-H-hccCc--c-cccccCCCC--CcCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 248898999888764 2 11000 0 000001111 1122233333445555543 34677888888898888
Q ss_pred HHHHc-CCCcCCCcccccceEEEEcCCcc--ccC-ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 338 LANAW-GTSLGSPPEICAAMVMVGLPSRL--RVM-GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 338 L~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
|.++. ...++......+.++.+.+.... ... +......+...|.++ ||.+....... ....
T Consensus 356 l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~-Gv~~~~~g~~v--------------~~~~ 420 (451)
T PRK07678 356 LKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEK-GLIIGKNGDTV--------------AGYN 420 (451)
T ss_pred HHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHC-CcEEeecCccc--------------cCCC
Confidence 86542 22222222233555555552100 000 112245778888765 99985321100 0123
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+|++++..+|++||+++++++.++++.
T Consensus 421 ~~lrl~Ppl~it~~eid~~~~~l~~~l~~ 449 (451)
T PRK07678 421 NVLTLSPPLVISSEEIAFIVGTLKTALER 449 (451)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999998853
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=158.23 Aligned_cols=344 Identities=11% Similarity=0.091 Sum_probs=207.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+....... ......+...++.++|+++++.+ .+.+.|++|||+|++.++. ++|.+....
T Consensus 56 ~lGh~~p~i~~Ai~~q~~~~~~~~---~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~Alk-lAr~~~~~~ 130 (428)
T PRK07986 56 IHGYNHPQLNAAMKSQIDAMSHVM---FGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMK-MALQYWQAK 130 (428)
T ss_pred cCCCCCHHHHHHHHHHHhhcCCcc---ccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHH-HHHHHHHhc
Confidence 446777889999998876532111 11112345677788888887543 4689999999999999998 445442110
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh-------cC---cEEEEEeCCCCCC-C-h-HHHHHHHHHHHhccccCCCceEE
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR-------AG---GSVVEVQLPFPLA-S-E-EEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~-------~g---~~v~~~~~~~~~~-~-~-~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
-..+.+|+....+|++.......+... .+ ..+..++.+.... . . ....+++++.+++. .+++.+
T Consensus 131 g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~---~~~iaa 207 (428)
T PRK07986 131 GEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAH---RHEIAA 207 (428)
T ss_pred CCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhC---CCcEEE
Confidence 123568999988888754332211000 00 0112232211000 0 0 12267788878532 457889
Q ss_pred EEEecc-CCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcE
Q 012991 194 AIIDHI-TSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVA 262 (452)
Q Consensus 194 v~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G 262 (452)
|+++.. +...|...+ +++|.++|++||+ ++|+|+++. +|-.. .+.....+|++++ .|.+.|+ ..+|
T Consensus 208 vi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~-lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~--gK~l~gG~~p~~ 284 (428)
T PRK07986 208 VILEPIVQGAGGMRIYHPEWLKRVRKLCDREGI-LLIADEIATGFGRTGKLFACEHAGIAPDILCL--GKALTGGTMTLS 284 (428)
T ss_pred EEEechhcCcCCcccCCHHHHHHHHHHHHHcCC-EEEEeccccCCccCCCeeeecccCCCCCEEEe--chhhhCCcccCc
Confidence 999875 555566432 7899999999999 899999984 33221 1233346898875 5987655 2467
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
.+++++++.+. +. +.. ........++. .+.....+..++++.+.+ +.+.++.+++.+++.+.|.++.
T Consensus 285 av~~~~~i~~~-~~-~~~----~~~~~~~~T~~--g~p~~~aaa~a~L~~i~~-----~~~~~~~~~~g~~l~~~l~~l~ 351 (428)
T PRK07986 285 ATLTTREVAET-IS-NGE----AGCFMHGPTFM--GNPLACAVANASLSLLES-----GDWQQQVAAIEAQLREELAPLR 351 (428)
T ss_pred chhchHHHHHH-hh-cCC----CCccccCCCCC--cCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHh
Confidence 77788877764 21 100 00000011111 222233334445555553 2458888899999999988763
Q ss_pred CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 343 GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
....+......+.++.+.+. +......+.+.|.++ |+.+... ++.+|+.++.
T Consensus 352 ~~~~i~~vRg~Gl~~~ve~~------~~~~~~~~~~~l~~~-Gl~~~~~---------------------g~~i~~~Ppl 403 (428)
T PRK07986 352 DAPMVADVRVLGAIGVVETT------RPVNMAALQRFFVEQ-GVWIRPF---------------------GKLIYLMPPY 403 (428)
T ss_pred cCCCEEeEeccceEEEEEeC------CcccHHHHHHHHHHC-CcEEEec---------------------CCEEEEeCCC
Confidence 33322222234556666553 122356788888764 9988521 2589999998
Q ss_pred cCCHHHHHHHHHHHHHHHhc
Q 012991 423 YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~~~ 442 (452)
..|++||++++++|.+.++.
T Consensus 404 ~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 404 IILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 89999999999999999864
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=158.84 Aligned_cols=353 Identities=10% Similarity=0.076 Sum_probs=210.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+.... .... + ....+...++.+++++++..+ .+.+.|+++||+|++.++. ++|.+....
T Consensus 65 ~lGh~~p~v~~Av~~q~~~~~-~~~~-~-~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~Alk-lAr~~~~~~ 139 (460)
T PRK06541 65 QVGHGRAELAEAAAKQAGTLA-FFPL-W-SYAHPPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWK-LAKQYFKLT 139 (460)
T ss_pred cCCCCCHHHHHHHHHHHhhCc-Cccc-c-ccCCHHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHH-HHHHHHHhc
Confidence 456777889999998886531 1111 0 112345567778888887543 4689999999999999998 445442100
Q ss_pred CC-CCCEEEEeCCcchhHHHHHHHHHHh----c--C---cEEEEEeCCC----C-CCCh----HH-HHHHHHHHHhcccc
Q 012991 127 FH-RNDTVLMLHCAFQAVKKSIQAYVTR----A--G---GSVVEVQLPF----P-LASE----EE-IINEFKKGIEKGKK 186 (452)
Q Consensus 127 ~~-~g~~Vl~~~~~~~s~~~~~~~~a~~----~--g---~~v~~~~~~~----~-~~~~----~~-~~~~l~~~i~~~~~ 186 (452)
-. .+.+|+....+|++.......+... . + ..+..++.+. + ..++ .. .++.+++.+++.
T Consensus 140 g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 217 (460)
T PRK06541 140 GKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE-- 217 (460)
T ss_pred CCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--
Confidence 01 2468998888888765433221110 0 0 1122232211 0 0011 11 146778777531
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCccc----cccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIKI----DVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~~----~~~~~~~d~~~~s~~K~l~g 257 (452)
...++.+|+++...++.|.+.+ +++|.++|++||+ ++|+|+++ ++|-... ......+|++++ +|.+.+
T Consensus 218 ~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~-llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~--gK~l~~ 294 (460)
T PRK06541 218 GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDV-LLVSDEVICAFGRLGEMFGCERFGYVPDIITC--AKGITS 294 (460)
T ss_pred CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCcCchhhhhhhcCCCCCEEEe--cccccC
Confidence 1356889999988999999988 8999999999999 89999998 5653321 112235898875 598776
Q ss_pred CC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 PP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+. .+|.+++++++.+. +.... .. .....+ ...+.....+..+.++.+.+ +.+.++++++.++|.+
T Consensus 295 G~~pigav~~~~~i~~~-~~~~~-~~-----~~~~~T--~~gnp~~~aaala~l~~l~~-----~~~~~~~~~~g~~l~~ 360 (460)
T PRK06541 295 GYSPLGAMIASDRLFEP-FLDGP-TM-----FLHGYT--FGGHPVSAAVALANLDIFER-----EGLLDHVRDNEPAFRA 360 (460)
T ss_pred CccceeEEEEcHHHHHH-hhcCC-Cc-----cccCCC--CCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHH
Confidence 43 47888888887764 11110 00 000000 11111222333334444442 3467888999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccC----Chh----hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVM----GED----DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
.|.++....++......+.++.+.+.+..... ... -...+.+.|.++ ||.+....
T Consensus 361 ~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~---------------- 423 (460)
T PRK06541 361 TLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEA-GLYCRADD---------------- 423 (460)
T ss_pred HHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhC-CeEEEecC----------------
Confidence 99887433332222233556666552100000 000 112566777664 99985310
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+.+|+++....|++||+.++++|.+.+..
T Consensus 424 --~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 424 --RGDPVVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred --CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12368999999889999999999999999864
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=157.48 Aligned_cols=344 Identities=10% Similarity=0.083 Sum_probs=210.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... .... .....+...++.+++++.+..+ .+.+.|+++|++|++.++. ++|++....
T Consensus 57 ~lGh~~p~v~~ai~~q~~~~~-~~~~--~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~Alk-lAr~~~~~~ 131 (429)
T PRK06173 57 LHGYNHPRLNAAATNQLAKMS-HIMF--GGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMK-MALQYQQAK 131 (429)
T ss_pred cCCCCCHHHHHHHHHHHHhcC-Cccc--cccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHH-HHHHHHHHh
Confidence 346777889999998876532 1111 1112345677888888887542 4699999999999999998 455442111
Q ss_pred CCC-CCEEEEeCCcchhHHHHHHHHHH-----hcC-----cEEEEEeCCCCC--CChHH-HHHHHHHHHhccccCCCceE
Q 012991 127 FHR-NDTVLMLHCAFQAVKKSIQAYVT-----RAG-----GSVVEVQLPFPL--ASEEE-IINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 127 ~~~-g~~Vl~~~~~~~s~~~~~~~~a~-----~~g-----~~v~~~~~~~~~--~~~~~-~~~~l~~~i~~~~~~~~~~~ 192 (452)
-++ +.+|+....+||+.......+.. +.+ ..+..++.+... ..... .++.+++.++.. .++++
T Consensus 132 g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~---~~~iA 208 (429)
T PRK06173 132 GEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQK---GDEIA 208 (429)
T ss_pred CCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhC---CCcEE
Confidence 123 45788888888874322111100 000 012223221000 01111 267778888532 46799
Q ss_pred EEEEecc-CCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCC-Cc
Q 012991 193 LAIIDHI-TSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPP-SV 261 (452)
Q Consensus 193 lv~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~-G~ 261 (452)
+|+++.. ....|.+.| +++|.++|++||+ ++|+|++|. +|-.. .+.....+|++++ .|.+.|+. .+
T Consensus 209 Avi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~-llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~--gK~l~gG~~p~ 285 (429)
T PRK06173 209 ALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV-LLIFDEIATGFGRTGKLFALEHAGVVPDIMCI--GKALTGGYLTL 285 (429)
T ss_pred EEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC-eEEecchhcCCCcCCcchHHHhcCCCCCEEEe--ehhhhCCcccc
Confidence 9999985 777788754 7789999999999 899999984 22221 1222335898884 69886552 36
Q ss_pred EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 262 AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 262 G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
+.++.++++.+. +. +. .........++ ..+.....+..++++.+.+ +.+.++++++.++|.+.|.++
T Consensus 286 ~a~~~~~~i~~~-~~-~~----~~~~~~~~~T~--~g~p~~~aaa~a~l~~i~~-----~~~~~~~~~~g~~l~~~L~~~ 352 (429)
T PRK06173 286 SATITTEAIAQT-IC-SG----EAKCFMHGPTF--MANPLACAIAAESIRLLLE-----SPWQQNIQRIEAQLKQELAPA 352 (429)
T ss_pred ceEEecHHHHHH-Hh-cC----CCCccccCCCC--CcCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHh
Confidence 777788777654 21 10 00000000011 1222333444455666654 235778889999999999865
Q ss_pred cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 342 WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
.+...+......+.++.+.+. +..+...+.+.|.++ ||.+... ++.+|+.++
T Consensus 353 ~~~~~v~~vRg~Gl~~~iel~------~~~~~~~i~~~l~e~-Gi~v~~~---------------------g~~l~~~Pp 404 (429)
T PRK06173 353 AEFDSVAEVRVLGAIGVVEMK------EPVNMATLQPRFVEH-GIWVRPF---------------------GKLVYIMPP 404 (429)
T ss_pred hcCCCeeeeeccceEEEEEeC------CcccHHHHHHHHHHC-CeEEEec---------------------CCEEEEeCC
Confidence 344333222234666667664 223456788888775 9998521 258999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
...|++|++.++++|++.+..
T Consensus 405 l~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 405 FIISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=159.72 Aligned_cols=329 Identities=14% Similarity=0.131 Sum_probs=193.6
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|..++.|.+++.+.+.... . + ....+...+++++|++++... +.++|++||++|+..++... |.+
T Consensus 62 lGh~~p~v~~ai~~q~~~~~----~-~-~~~~~~~~~lae~l~~~~~~~--~~v~~~~sGseA~e~Alk~a-r~~----- 127 (423)
T TIGR00713 62 LGHAHPRVVEAVKEALERGT----S-Y-GAPTEAEILLAKEIISRVPSV--EMVRFVNSGTEATMSAVRLA-RGY----- 127 (423)
T ss_pred cCCCCHHHHHHHHHHHHhCC----c-C-CCCCHHHHHHHHHHHHhCCcc--cEEEEeCCHHHHHHHHHHHH-HHh-----
Confidence 46788889999999876521 1 1 123456788999999988653 68999999999999999854 333
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCC-------------CCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLP-------------FPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~-------------~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
..+++|++.+++|++.......+.. .+......+.. .+.+ .++++++.+++. ..++++|
T Consensus 128 ~gr~~ii~~~~~yhG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~l~~~i~~~---~~~~aav 199 (423)
T TIGR00713 128 TGRDKIIKFEGCYHGHHDALLVKAG-SGAATLGLPTSPGVPEDFAKLTLVLPYN----DLEALEEVFEEY---GEEIAGV 199 (423)
T ss_pred hCCCEEEEEcCCCCCChhhhhcccc-CcccccCCCCCCCCCcccccceEEeCCC----CHHHHHHHHHHc---CCcEEEE
Confidence 4568999999999986433322100 01000000000 0111 167888888532 3578888
Q ss_pred EEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCc--c--ccccccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 195 IIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSI--K--IDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 195 ~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~--~--~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
+++...+.+|.+.| +++|.++|++||+ ++|+|+++..... . .......+|++ +++|.+.++..+|++++
T Consensus 200 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~pig~v~~ 276 (423)
T TIGR00713 200 IVEPVAGNMGVVPPKPEFLAGLRALTEEYGS-LLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIGGGLPVGAFGG 276 (423)
T ss_pred EEeCCCCCCCCcCCCHHHHHHHHHHHHHhCC-EEEEEccccccccCcchhHHHhCCCcchh--hhhhhhcCCCceeeeeE
Confidence 88755555898877 6799999999999 8999999853221 1 11122346765 57798654333799999
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc---C
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW---G 343 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---~ 343 (452)
++++.+. +.... . .....+...+...+.+..++++.+.+. + +.++.+++.+++++.|.++. +
T Consensus 277 ~~~i~~~-~~~~~-~--------~~~~~T~~~~~~~~aaa~a~l~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~ 341 (423)
T TIGR00713 277 RREIMER-LAPEG-P--------VYQAGTLSGNPLAMAAGLATLKLLDEE--G---VYTELDELAKRLAEGLSEVLEDTG 341 (423)
T ss_pred HHHHHHh-hCcCC-C--------eeeccCCCCCHHHHHHHHHHHHHHhcc--c---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887765 21100 0 000001122333344444556655531 2 34455555555555554321 3
Q ss_pred CCcCCCcccccceEEEEcCCc--ccc-----CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 344 TSLGSPPEICAAMVMVGLPSR--LRV-----MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
+.. .....+.++.+.+... .+. .+......+.+.|.+ .||.++.. ..+.+
T Consensus 342 ~~~--~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~--------------------~~~~~ 398 (423)
T TIGR00713 342 IPH--TVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPS--------------------QFEAC 398 (423)
T ss_pred CCe--EEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecC--------------------Cccce
Confidence 221 1111244544433210 000 001123467778876 59998521 12457
Q ss_pred EecccccCCHHHHHHHHHHHHHHHh
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~ 441 (452)
|+++. .|++|++.++++|.++++
T Consensus 399 ~l~~~--~t~~~i~~~~~~l~~~l~ 421 (423)
T TIGR00713 399 FLSAA--HTEEDIENTIEAAEEVFA 421 (423)
T ss_pred eeECC--CCHHHHHHHHHHHHHHHh
Confidence 88876 499999999999998875
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-17 Score=155.63 Aligned_cols=350 Identities=13% Similarity=0.125 Sum_probs=221.5
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
|.--+.+.+++.+.+....-. .. +.....+ ..++.++|+++....+-+.|+|++|||+|++.++. ++++|++..-+
T Consensus 59 Gh~~~~i~~Ai~~Q~~~l~~~-~~-~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlK-ma~qY~~~~G~ 134 (449)
T COG0161 59 GHGRPEIAEAIKKQLDKLPHV-MF-GGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALK-MALQYWRARGQ 134 (449)
T ss_pred CcCCHHHHHHHHHHHHhCCch-hh-cccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHH-HHHHHHHhcCC
Confidence 556677999998888764211 11 1122223 67888899999884336899999999999999998 66776544344
Q ss_pred CC-CEEEEeCCcchhHHHHHHHHHH----h---cC---cEEEEEeCCCC------CCChH---HHHHHHHHHHhccccCC
Q 012991 129 RN-DTVLMLHCAFQAVKKSIQAYVT----R---AG---GSVVEVQLPFP------LASEE---EIINEFKKGIEKGKKDG 188 (452)
Q Consensus 129 ~g-~~Vl~~~~~~~s~~~~~~~~a~----~---~g---~~v~~~~~~~~------~~~~~---~~~~~l~~~i~~~~~~~ 188 (452)
+. .+++.-...|++...+...+.. + .+ ..+..++.+.. .+.+. ...++|++.|.+. +
T Consensus 135 p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~---g 211 (449)
T COG0161 135 PQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEH---G 211 (449)
T ss_pred CcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhc---C
Confidence 53 4588878888775544322211 0 00 11222322211 01122 3378899888764 4
Q ss_pred -CceEEEEEeccCCC-Cccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCcc----ccccccCccEEEEcCcccCcC
Q 012991 189 -KMIRLAIIDHITSM-PCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 189 -~~~~lv~~~~~~n~-tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
+++.+|+++..... .|++.| +++|.++|++||+ ++|.|++- ++|-.. .+-....+|+++.+ |.|.|
T Consensus 212 ~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~I-LlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~a--KGLT~ 288 (449)
T COG0161 212 PETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGI-LLIADEVATGFGRTGKMFACEHAGIVPDILCLA--KGLTG 288 (449)
T ss_pred cccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCc-EEEeecceeCCCcCchhhhhhhcCCCCCeeeec--ccccc
Confidence 67899999888776 788776 7899999999999 99999975 344321 12223468999988 87755
Q ss_pred C-CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 P-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+ ..+|.+++++++.+. +.... ...+.+|......-+++++|++-++-+ ..+.+.++.+++..++.+
T Consensus 289 GY~Pl~a~l~~~~I~~~-~~~~~----------~~~f~HG~TYsghPlacAaAla~L~i~--e~e~l~~~~~~~~~~l~~ 355 (449)
T COG0161 289 GYLPLSAVLTSDRIYEA-FSDGD----------AGAFMHGHTYSGNPLACAAALANLDIL--EEEDLLERVAEIGAYLQA 355 (449)
T ss_pred cchhhHhHhhhHHHHHH-Hhccc----------CCeeccCCccccCHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHH
Confidence 3 337777888877775 22211 111112222222334445555555544 335678889999999999
Q ss_pred HHHH-HcCCCcCCCcccccceEEEEcCCccccCC---hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 337 MLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMG---EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 337 ~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
.|.+ +.+-..+......+.+..+.+-...+.+. ..-...+...+.++ |+.+++.
T Consensus 356 ~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~-Gl~iRp~--------------------- 413 (449)
T COG0161 356 GLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALER-GLLIRPL--------------------- 413 (449)
T ss_pred HHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHC-CeEEeec---------------------
Confidence 9987 43334444444446666666532111111 01145677777665 9999743
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
+..+=+++.+..|++||+++++++++.+++.
T Consensus 414 g~~i~~~PPliit~~eid~l~~~l~~al~~~ 444 (449)
T COG0161 414 GDVIYLMPPLIITREEIDELVDALREALDET 444 (449)
T ss_pred CCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 2478899998899999999999999998753
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-16 Score=154.35 Aligned_cols=341 Identities=12% Similarity=0.110 Sum_probs=208.8
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.|.+++.+.+....... . ....+...++.++|+++...+ .+.+.|++|||+|++.++.. +|.+
T Consensus 67 lGh~~p~v~~Ai~~q~~~~~~~~-~---~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~Alkl-Ar~~----- 135 (451)
T PRK06062 67 IGHQHPKVVAAIQEQAARLCTVA-P---AHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRM-ARLH----- 135 (451)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcC-C---ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHH-HHHh-----
Confidence 56777789999999886532111 1 112445677888888887542 46999999999999999984 4443
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhc---C-----cEEEEEeCCCCC-------CC-hHH--HHHHHHHHHhccccCCC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRA---G-----GSVVEVQLPFPL-------AS-EEE--IINEFKKGIEKGKKDGK 189 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~---g-----~~v~~~~~~~~~-------~~-~~~--~~~~l~~~i~~~~~~~~ 189 (452)
..+.+|+.....||+.......+.... . ..+..++.+.+. ++ +.. .++.+++.++.. ..+
T Consensus 136 tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~ 213 (451)
T PRK06062 136 TGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELE--GPS 213 (451)
T ss_pred hCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhc--CCC
Confidence 345689988888888654433221100 0 011222221111 11 111 167788888531 125
Q ss_pred ceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCC-
Q 012991 190 MIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPP- 259 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~- 259 (452)
++++|+++......|.+.| +++|.++|++||+ ++|+|++++ +|-.. .+.....+|+++++ |.+.|+.
T Consensus 214 ~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~-lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~g--K~lggG~~ 290 (451)
T PRK06062 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGI-VLIADEVMAGFGRTGKWFAIEHFGVVPDLITFA--KGVNSGYV 290 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCC-EEEeeccccCCCcCcHHHHHHhcCCCCCeeeec--hhhhcCCc
Confidence 7899999999988899988 8999999999999 899999986 33221 12223468988765 9887653
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA-LKMARML 338 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~-~~l~~~L 338 (452)
.+|.+++++++.+. +.... + ....++.+ +..+..+..++++.+.+ +.+.++.+++. .++.+.|
T Consensus 291 Pigav~~~~~i~~~-~~~~~----~----~~~~T~~g--npl~~Aaa~a~L~~l~~-----~~l~~~~~~~G~~~l~~~L 354 (451)
T PRK06062 291 PLGGVAISEAIAAT-FADRP----Y----PGGLTYSG--HPLACAAAVATINAMEE-----EGIVENAARIGAEVLGPGL 354 (451)
T ss_pred CcEEEEEcHHHHHH-hccCC----C----CCCCCCCC--CHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHH
Confidence 47888888877664 21100 0 00111122 22233344455666553 23677777776 5788888
Q ss_pred HHHcC-CCcCCCcccccceEEEEcCCccccCC---h-----hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 339 ANAWG-TSLGSPPEICAAMVMVGLPSRLRVMG---E-----DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 339 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
.++.. ..++......+.++.+.+........ . .....+...|.++ ||.+..
T Consensus 355 ~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~------------------- 414 (451)
T PRK06062 355 RELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKER-GLLPFV------------------- 414 (451)
T ss_pred HHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHC-CcEEee-------------------
Confidence 76522 22222222335555555521000000 0 0234677888764 998741
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+.+|+++...+|++||+.+++++++.++.
T Consensus 415 --~~~~lrl~ppl~~t~~eid~~~~~l~~~l~~ 445 (451)
T PRK06062 415 --NGNRIHVVPPCTVTEDEVREGLAILDAALAV 445 (451)
T ss_pred --cCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 1358999998888999999999999998864
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-16 Score=154.76 Aligned_cols=342 Identities=11% Similarity=0.095 Sum_probs=206.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... . ..+.....+...++.++++++.+.+ .+.+.|+++||+|++.++. ++|+|....
T Consensus 53 ~lGh~~p~i~~ai~~q~~~~~-~--~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~Alk-lAr~~~~~~ 127 (422)
T PRK05630 53 AHGHGHPRLKAAAHKQIDTMS-H--VMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIK-MALQYSKGQ 127 (422)
T ss_pred cCCCCCHHHHHHHHHHHHhCC-C--cccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHH-HHHHHHHhc
Confidence 457777889999998886531 1 1111112344677888888887542 4699999999999999998 555553111
Q ss_pred CCC-CCEEEEeCCcchhHHHHHHHHHHhc-------C---cEEEEEeCCCCCC-Ch--HH-HHHHHHHHHhccccCCCce
Q 012991 127 FHR-NDTVLMLHCAFQAVKKSIQAYVTRA-------G---GSVVEVQLPFPLA-SE--EE-IINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 127 ~~~-g~~Vl~~~~~~~s~~~~~~~~a~~~-------g---~~v~~~~~~~~~~-~~--~~-~~~~l~~~i~~~~~~~~~~ 191 (452)
-.+ +.+|+....+|++.......+.... + ..+..++.+.... .. .. ..+.+++.+ .+++
T Consensus 128 g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------~~~i 201 (422)
T PRK05630 128 GHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLI------DETV 201 (422)
T ss_pred CCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHH------hhce
Confidence 112 4589998888887543332111100 0 1122232211000 11 11 156667666 3578
Q ss_pred EEEEEecc-CCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CC
Q 012991 192 RLAIIDHI-TSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PS 260 (452)
Q Consensus 192 ~lv~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G 260 (452)
.+|+++.. ....|...| +++|.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.+.|+ ..
T Consensus 202 AAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~-llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~g--K~l~gG~~p 278 (422)
T PRK05630 202 AAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDI-LLIADEIATGFGRTGELFATLAAGVTPDIMCVG--KALTGGFMS 278 (422)
T ss_pred EEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCC-EEEEecceeCCCcCchhhHHHhcCCCCCeeeee--chhhcCccc
Confidence 99999974 666777654 7789999999999 899999974 33221 12223468998664 998553 23
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|++++++++.+. +..+. .........++ ..+.....+..++++.+.+ +.+.++.+++.+++.+.|..
T Consensus 279 ~~av~~~~~i~~~-~~~~~----~~~~~~h~~T~--~g~Pla~aaa~aaL~~l~~-----~~~~~~~~~~g~~l~~~L~~ 346 (422)
T PRK05630 279 FAATLCTDKVAQL-ISTPN----GGGALMHGPTF--MANPLACAVAHASLEIIET-----GMWRKQVKRIEAELIAGLSP 346 (422)
T ss_pred cceeeccHHHHHH-HhccC----CCCccccCCCC--cCCHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHH
Confidence 6888888887764 21110 00000001111 1222233334445555553 24566888888888888876
Q ss_pred HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc
Q 012991 341 AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420 (452)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 420 (452)
+.....+......+.++.+.+. +..++..+.+.+.++ |+.+.. .++.+|+.+
T Consensus 347 l~~~~~v~~vRg~Gl~~~ie~~------~~~~~~~~~~~~~~~-Gl~~~~---------------------~g~~l~~~P 398 (422)
T PRK05630 347 LAHLPGVADVRVLGAIGVVEME------QPVDMEEATQAAVDH-GVWLRP---------------------FGRLVYVMP 398 (422)
T ss_pred hhcCCCeeeeeccccEEEEEEC------CcccHHHHHHHHHHC-CeEEEe---------------------cCCEEEEEC
Confidence 4322222222234667777664 122355788888764 999842 125899999
Q ss_pred cccCCHHHHHHHHHHHHHHHhc
Q 012991 421 QVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 421 ~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+...|++||+.++++|++.+..
T Consensus 399 pL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 399 PYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred CccCCHHHHHHHHHHHHHHHhc
Confidence 9989999999999999998864
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-16 Score=154.48 Aligned_cols=350 Identities=11% Similarity=0.093 Sum_probs=210.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccccc-C
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTE-G 125 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~-~ 125 (452)
..|...+.+.+++.+.+..... ... .....+...++.++++++++.. .+.++|+++||+|++.++... +++.. .
T Consensus 67 ~lGh~~p~v~~Ai~~ql~~~~~-~~~--~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGseAve~AlKlA-~~~~~~r 141 (453)
T PRK06943 67 LFGHANPRINAALKDQLDTLEH-AML--AGCTHEPAIELAERLAALTGGT-LGHAFFASDGASAVEIALKMS-FHAWRNR 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHhcCC-ccc--cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCCHHHHHHHHHHH-HHHHHHh
Confidence 4578888899999998865311 111 1112345567888888887643 368999999999999999844 33311 0
Q ss_pred CCCCCCEEEEeCCcchhHHHHHHHHHHhc------C---cEEEEEeCCCC----CC-C-h-H--HHHHHHHHHHhccccC
Q 012991 126 RFHRNDTVLMLHCAFQAVKKSIQAYVTRA------G---GSVVEVQLPFP----LA-S-E-E--EIINEFKKGIEKGKKD 187 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~------g---~~v~~~~~~~~----~~-~-~-~--~~~~~l~~~i~~~~~~ 187 (452)
....+.+|+....+|++.......+.... + ..+..++.+.. .. . + . ..++.+++.++..
T Consensus 142 g~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 218 (453)
T PRK06943 142 GRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAER--- 218 (453)
T ss_pred CCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhC---
Confidence 11234689998888888543322111000 0 01223332110 00 0 0 1 1157777777532
Q ss_pred CCceEEEEEec-cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCccc----cccccCccEEEEcCcccCcC
Q 012991 188 GKMIRLAIIDH-ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIKI----DVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 188 ~~~~~lv~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~~----~~~~~~~d~~~~s~~K~l~g 257 (452)
.+++.+|+++. +....|.+.+ ++++.++|++||+ ++|+|+++. +|-... +.....+|+++++ |.+.|
T Consensus 219 ~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gi-llI~DEV~TG~GRtG~~fa~~~~gv~PDivt~g--Kgl~g 295 (453)
T PRK06943 219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGV-HLIADEIAVGCGRTGTFFACEQAGVWPDFLCLS--KGISG 295 (453)
T ss_pred CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCC-EEEeechhhCCCCCcchhHHHhCCCCCCeEeee--hhhcc
Confidence 46899999998 3777788765 7789999999999 999999974 443321 2223468999996 98877
Q ss_pred CC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 PP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+. .+|.+++++++.+. +.... .........++.| +..+..+..+.++.+.+ +.+.++..++.++|.+
T Consensus 296 G~~Pi~av~~~~ei~~~-~~~~~----~~~~~~~~~T~~g--npl~~aaa~a~L~~i~~-----~~l~~~~~~~G~~l~~ 363 (453)
T PRK06943 296 GYLPLSLVLSRDAIFAA-FYDDD----VTRGFLHSHSYTG--NPLACRAALATLDLFAE-----DDVLARNARKSARLRA 363 (453)
T ss_pred CcccceEEEEcHHHHHh-hcccC----ccCCccCCCCCCC--CHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH
Confidence 63 58888898887764 11100 0000000111112 22223333344555543 3467788888899999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++.....+......+.++.+.+..... ....-...+...+.++ |+.+.. .++.+
T Consensus 364 ~L~~l~~~~~v~~vrG~Gl~~gvel~~~~~-~~~~~~~~i~~~~~~~-Gll~~~---------------------~g~~l 420 (453)
T PRK06943 364 ALAPLAAHPQVRHLRQRGTIFAFDVALDGD-AARTFSRRFFEAALER-ELLLRP---------------------IGTTV 420 (453)
T ss_pred HHHHHhcCCCEEeEeccccEEEEEEccCCC-cchHHHHHHHHHHHHC-CcEEEe---------------------cCCEE
Confidence 988763222222222345566666531000 0011245677777664 998842 12469
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|+++....|++||++++++|++.+.+
T Consensus 421 ~~~Ppl~it~~eid~~~~~l~~al~~ 446 (453)
T PRK06943 421 YLMPPYVLDDDEIAWLAERTRATLDA 446 (453)
T ss_pred EEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 99998888999999999999999864
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-15 Score=150.26 Aligned_cols=344 Identities=13% Similarity=0.113 Sum_probs=209.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+..... ... .....+...++.+++++.+..+..+.++|++|||+|++.++.. +|.+
T Consensus 53 ~lGh~~p~v~~ai~~ql~~l~~-~~~--~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~Alkl-Ar~~---- 124 (425)
T PRK07495 53 NTGHRHPRVIAAVKAQLDRFTH-TCH--QVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKI-ARAA---- 124 (425)
T ss_pred ccCCCCHHHHHHHHHHHhhccC-ccc--CccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHH-HHHh----
Confidence 3577888899999998875321 111 1122345666788888887532125899999999999999984 4443
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHH-----hcC-----cEEEEEeCCCCCCCh----HHHHHHHHHHHhccccCCCceE
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVT-----RAG-----GSVVEVQLPFPLASE----EEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~-----~~g-----~~v~~~~~~~~~~~~----~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
..+.+|+.....|++.......+.. +.+ ..+..++. |.+.. ....+.+++.++.. ...++++
T Consensus 125 -tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~l~~~~~~~-~~~~~ia 200 (425)
T PRK07495 125 -TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPF--PVELHGVSVEQSLAALDKLFKAD-VDPQRVA 200 (425)
T ss_pred -hCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecC--CcccccccHHHHHHHHHHHHHhc-cCCCceE
Confidence 3456899888888886543322110 001 12333433 21111 11256667776421 0135789
Q ss_pred EEEEeccCCCCcccc-c---HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCCCcEE
Q 012991 193 LAIIDHITSMPCVVI-P---VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 193 lv~~~~~~n~tG~~~-~---l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
+|+++.....+|... | +++|.++|++||+ ++|+|++++ +|-.. .+.....+|++++ +|.+.++..+|+
T Consensus 201 avi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~-llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tl--sK~l~~G~piga 277 (425)
T PRK07495 201 AIIIEPVQGEGGFYPAPAAFMKALRELCDQHGI-LLIADEVQTGFARTGKLFAMEHHEVAADLTTM--AKGLAGGFPLAA 277 (425)
T ss_pred EEEECCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhhcCCcCCCceeecccCCCCCEEee--hhhhcCCccceE
Confidence 999998877778654 3 7789999999999 899999976 32221 1222234677665 598766545789
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
+++++++.+. + .+.. ...+ ...+.....+..++++++.+ +.+.++.+++.+++.+.|.++..
T Consensus 278 v~~~~~i~~~-~-~~~~---------~~~T--~~~~pl~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l~~~L~~l~~ 339 (425)
T PRK07495 278 VTGRAEIMDA-P-GPGG---------LGGT--YGGNPLGIAAAHAVLDVIEE-----EDLCERANQLGNRLKQRLASLRE 339 (425)
T ss_pred EEEcHHHHhc-c-CCCC---------cCCC--CCCCHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHh
Confidence 8898887765 2 1110 0111 12222334444456666653 34677888888888888876522
Q ss_pred -CCcCCCcccccceEEEEcCCccc-cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 344 -TSLGSPPEICAAMVMVGLPSRLR-VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 344 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
..........+.++++.+.+... ..+..-...+.+.+.+ .|+.+.... ..++.+|+.++
T Consensus 340 ~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~g------------------~~~~~~r~~Pp 400 (425)
T PRK07495 340 TVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALE-KGLILLTCG------------------VHGNVIRFLAP 400 (425)
T ss_pred hCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHH-CCeEEeecC------------------CCCCEEEEeCC
Confidence 22222222336777777632100 0011123567777766 499984211 12368999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
...|++|++.++++|++.++.
T Consensus 401 l~it~~~id~~~~~l~~~l~~ 421 (425)
T PRK07495 401 ITIQDDVFAEALDILEASILE 421 (425)
T ss_pred CccCHHHHHHHHHHHHHHHHH
Confidence 989999999999999999864
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-16 Score=154.15 Aligned_cols=345 Identities=14% Similarity=0.117 Sum_probs=203.6
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|..++.+.+++.+.+.... . ..+.....+...++.+.+++..+.+..+.++|+++|++|+..++... +.+
T Consensus 55 lGh~~~~i~~a~~~~~~~~~-~--~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alkla-r~~----- 125 (425)
T PRK08088 55 TGHLHPKVVAAVEAQLKKLS-H--TCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAA----- 125 (425)
T ss_pred CCCCCHHHHHHHHHHHhhCC-C--ccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHH-HHH-----
Confidence 46667889999998876531 1 11111112234567777777776532258899999999999988854 433
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHh-c----Cc-----EEEEEeCCCCCCC-h-HHHHHHHHHHHhccccCCCceEEEE
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTR-A----GG-----SVVEVQLPFPLAS-E-EEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~-~----g~-----~v~~~~~~~~~~~-~-~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
..+.+|++.+++|++.......+... . |. .+..++.+.+..+ + ...++.|++.++... ..+++++|+
T Consensus 126 ~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~-~~~~~aavi 204 (425)
T PRK08088 126 TKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDA-APEDIAAII 204 (425)
T ss_pred hCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhcc-CCCceEEEE
Confidence 34457787799888876554432110 0 00 0111111111111 1 112567888875211 135788999
Q ss_pred EeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCcc----ccccccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 196 IDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 196 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
++......|.+.+ +++|.++|++||+ ++|+|++++. +... ++.....+|+ .|++|.+.+...+|++++
T Consensus 205 ~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~-~lI~Dev~~g~g~~g~~~~~~~~~~~pdi--~s~sK~l~~G~rig~v~~ 281 (425)
T PRK08088 205 IEPVQGEGGFYAASPAFMQRLRALCDEHGI-MLIADEVQTGAGRTGTLFAMEQMGVAADL--TTFAKSIAGGFPLAGVTG 281 (425)
T ss_pred ECcccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCcchhHHhhcCCCCCE--EEEeccccCCCcceeeEe
Confidence 9888777787766 7899999999999 8999999763 2211 1122233554 566798765555899999
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CC
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TS 345 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~ 345 (452)
++++++. +.... . . .+...+...+ .+++.++... ..+.+.++.++..+++.+.|.++.. ..
T Consensus 282 ~~~~~~~-~~~~~----~------~--~t~~~~~~~~---~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 343 (425)
T PRK08088 282 RAEVMDA-IAPGG----L------G--GTYAGNPIAC---AAALAVLKVF--EQENLLQKANALGEKLKDGLLAIAEKHP 343 (425)
T ss_pred cHHHHhh-cCCCC----C------C--CCCCcCHHHH---HHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888775 21111 0 0 0111222233 3344444432 2345566666777777777665421 21
Q ss_pred cCCCcccccceEEEEcCCccc--cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 346 LGSPPEICAAMVMVGLPSRLR--VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
........+.++|+.+.+... ..+......+.+.+.++ ||.+.... ..++.+|++++..
T Consensus 344 ~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~-Gv~~~~~~------------------~~~~~iRl~~~~~ 404 (425)
T PRK08088 344 EIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDK-GLILLSCG------------------PYYNVLRILVPLT 404 (425)
T ss_pred CeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhC-CCEEecCC------------------CCCCEEEEECCCC
Confidence 111122237778888732100 01233467788888765 98764211 1236899999988
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 012991 424 NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~ 442 (452)
.+.+||+..++.|+++++.
T Consensus 405 ~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 405 IEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999864
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-15 Score=153.35 Aligned_cols=354 Identities=8% Similarity=0.106 Sum_probs=212.6
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.+.+++.+.+.... .....+. ...+...++.++|++++..+ .+.++|++|||+|++.++. ++|.|....-
T Consensus 60 lGh~~p~i~~Ai~~q~~~~~-~~~~~~~-~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlK-lAr~~~~~~g 135 (459)
T PRK05965 60 VGYGQESIVEAAAEQMRELP-YATGYFH-FGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVR-FIRHYWNATG 135 (459)
T ss_pred CCCCCHHHHHHHHHHHHhcC-Ccccccc-cCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHH-HHHHHHHhcC
Confidence 35677889999999886531 1111111 12344567888888887542 4689999999999999998 4565532111
Q ss_pred -CCCCEEEEeCCcchhHHHHHHHHHH----h--cC---cEEEEEeCCCCC-----CCh---HH-HHHHHHHHHhccccCC
Q 012991 128 -HRNDTVLMLHCAFQAVKKSIQAYVT----R--AG---GSVVEVQLPFPL-----ASE---EE-IINEFKKGIEKGKKDG 188 (452)
Q Consensus 128 -~~g~~Vl~~~~~~~s~~~~~~~~a~----~--~g---~~v~~~~~~~~~-----~~~---~~-~~~~l~~~i~~~~~~~ 188 (452)
..+.+|+....+||+.......+.. + .+ ..+..++.+++. ++. .. .++.+++.+++.. .
T Consensus 136 ~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~ 213 (459)
T PRK05965 136 RPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELG--A 213 (459)
T ss_pred CCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcC--C
Confidence 1245799888888886432211110 0 11 012233322111 111 11 1567888775321 2
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
+++.+|+++......|.+.| +++|.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.+.|+.
T Consensus 214 ~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gi-llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~ 290 (459)
T PRK05965 214 DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGI-LFVADEVITGFGRTGPLFACEAEGVVPDLMTVA--KGLTSGY 290 (459)
T ss_pred CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhccCccCchhhhHhhcCCCCCeEEec--hhhccCC
Confidence 57899999998888888765 6789999999999 999999975 43321 12223468999987 9887763
Q ss_pred -CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 260 -SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 260 -G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
.+|.+++++++.+. +.... ..........++.| +..+..+..++++.+.+ +.+.++.+++.+++.+.|
T Consensus 291 ~Pi~av~~~~~i~~~-~~~~~---~~~~~~~h~~T~~g--npl~~Aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~~l 359 (459)
T PRK05965 291 VPMGAVLMSDHVYQG-IADGA---GAAAPVGHGYTYSA--HPVSAAVGLEVLRLYHE-----GGLLANGQKAGPRFAAGL 359 (459)
T ss_pred cceeEEEEcHHHHHH-Hhccc---cccccccccCCCCC--CHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHH
Confidence 58999998888764 11100 00000001111112 22222333334555543 456778889999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCCh-----hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE-----DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.++....++......+.++.+.+.......+. .-...+.+.+.++ |+.+.. ...
T Consensus 360 ~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gll~~~--------------------~g~ 418 (459)
T PRK05965 360 DALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYAN-GLVFRA--------------------FGD 418 (459)
T ss_pred HhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhC-CeEEEe--------------------cCC
Confidence 87633222222333456666655311000001 1245677777664 999852 113
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+|+.+..-.|++||+++++++.+.+++
T Consensus 419 ~~i~~~PpL~it~~ei~~~~~~l~~~l~~ 447 (459)
T PRK05965 419 GVLGFAPALCCTEGEFDLIFERTRKTLDD 447 (459)
T ss_pred cEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 57999999888999999999999998864
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-17 Score=164.13 Aligned_cols=310 Identities=12% Similarity=0.037 Sum_probs=211.9
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
...+....++++.+|+.||++ ...++++|+|.++..++.++ +++||.|++++.+|.|++.++.. .|
T Consensus 191 l~~~G~i~eAe~~AA~~fgAd--~tyfvvNGTS~~n~av~~a~--------~~~Gd~VLvdRN~HKSv~haLil----sg 256 (714)
T PRK15400 191 LDHSGPHKEAEEYIARVFNAD--RSYMVTNGTSTANKIVGMYS--------APAGSTVLIDRNCHKSLTHLMMM----SD 256 (714)
T ss_pred CCCChHHHHHHHHHHHHhCCC--cEEEEeCchHHHHHHHHHHh--------cCCCCEEEeecccHHHHHHHHHH----cC
Confidence 344567899999999999996 77888999999999999986 58999999999999999887655 59
Q ss_pred cEEEEEeCCCCCCChH--------HH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEE
Q 012991 156 GSVVEVQLPFPLASEE--------EI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFV 226 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~~--------~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~iv 226 (452)
+.++++.+.. +..+ .+ .+.+++.|++.++ ..+|..++++++++ .|.++++++|+++|+.++ +++
T Consensus 257 a~PVYl~P~r--n~~Gi~g~I~~~~~~~e~i~~~i~~~p~-ak~p~~~vit~pTY-dG~~yd~~~I~~~~~~~~---ilv 329 (714)
T PRK15400 257 VTPIYFRPTR--NAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNSTY-DGLLYNTDFIKKTLDVKS---IHF 329 (714)
T ss_pred CeEEEecccc--cccCCccCCCccccCHHHHHHHHHhCcc-ccCccEEEEECCCC-ccEecCHHHHHHHhCCCC---EEE
Confidence 9999997532 2221 12 5888888876432 13455789988865 799999999999998775 479
Q ss_pred ecccccCC--cc-c-ccc--ccCc---c--EEEEcCcccCcCCCCcEEEEEecCcccc-CCCCCceeccCCCCccccccc
Q 012991 227 DAAHAMGS--IK-I-DVK--EIGA---D--FYVSNLHKWFFCPPSVAFLYCRKSILSS-DMHHPVVSHEFGNGLPIESAW 294 (452)
Q Consensus 227 D~a~~~g~--~~-~-~~~--~~~~---d--~~~~s~~K~l~g~~G~G~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~ 294 (452)
|+||+.=. .+ + +.. ..++ | +++.|.||.+.+....+++.++.. +.. .+... .....
T Consensus 330 DEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-vd~~~~n~a-----------~~m~~ 397 (714)
T PRK15400 330 DSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEA-----------YMMHT 397 (714)
T ss_pred EccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC-CCHHHHHHH-----------HHHHc
Confidence 99976311 11 1 111 1234 4 999999999888888788777554 221 01111 12233
Q ss_pred ccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC------CCcCCCcc----------------c
Q 012991 295 IGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG------TSLGSPPE----------------I 352 (452)
Q Consensus 295 ~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~~----------------~ 352 (452)
+.+|++..++++..+..++... .| +.+.+...+++..+++.|.++.+ +++..++. .
T Consensus 398 STSPsY~l~ASLD~a~~~m~~~-~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whg 475 (714)
T PRK15400 398 TTSPHYGIVASTETAAAMMKGN-AG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHG 475 (714)
T ss_pred CCCcHHHHHHHHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccC
Confidence 4788998888888888888741 14 55666778888888998887755 44433220 0
Q ss_pred c-----------cceEEEEcCCccc----cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 353 C-----------AAMVMVGLPSRLR----VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 353 ~-----------~~~~~~~~~~~~~----~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
. ..=+.+..|.... ...+.++..+.+.|.+ +||.+-.. ....+-
T Consensus 476 f~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e-~gI~~E~~--------------------d~~~iL 534 (714)
T PRK15400 476 FKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDE-HGIVVEKT--------------------GPYNLL 534 (714)
T ss_pred cccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHH-cCCEEEec--------------------CCCeEE
Confidence 0 0001222221000 0025567788899955 69998422 234566
Q ss_pred ecccccCCHHHHHHHHHHHHHHHh
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+-++..+|.+++++|+++|.++-+
T Consensus 535 fl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 535 FLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHH
Confidence 666666799999999999998744
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-16 Score=152.16 Aligned_cols=330 Identities=10% Similarity=0.070 Sum_probs=198.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+....... .. ...+...++.++|+++.+. .+.++|++||++|++.++. ++|.|.+..
T Consensus 53 ~lGh~~p~v~~ai~~q~~~~~~~~-~~---~~~~~~~~la~~L~~~~~~--~~~v~f~~sGseA~e~Alk-lAr~~~~~~ 125 (408)
T PRK04612 53 GLGHNDPDLVAALTEQAGKLWHTS-NV---FYSAPPLKLAEELVTASRF--AEKVFLCNSGTEANEAAIK-LVRKWASSQ 125 (408)
T ss_pred cCCCCCHHHHHHHHHHHHhccccc-cc---cCCHHHHHHHHHHHhhCCC--CCEEEEcCchHHHHHHHHH-HHHHHHHhh
Confidence 456788889999998876531111 11 1233456677777777643 2689999999999999998 455542110
Q ss_pred CC--CCCEEEEeCCcchhHHHHHHHHHHhc----Cc-----EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 127 FH--RNDTVLMLHCAFQAVKKSIQAYVTRA----GG-----SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 127 ~~--~g~~Vl~~~~~~~s~~~~~~~~a~~~----g~-----~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
-+ .+.+|+....+|++............ +. .+..+ +.. ..+.+++.++ .+++++|+
T Consensus 126 g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~----d~~~l~~~~~-----~~~~aavi 192 (408)
T PRK04612 126 GRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYV----DFN----DVEALEAAMA-----GGDVAAVM 192 (408)
T ss_pred CCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEc----CCC----CHHHHHHhhC-----CCCEEEEE
Confidence 01 13478888888888644332211000 00 01111 111 1577787774 35677777
Q ss_pred EeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc--cccc--ccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 196 IDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK--IDVK--EIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 196 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~~~~--~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
++..+...|.+.+ +++|.++|++||+ ++|+|++++ +|... +... ...+|++++ +|.+.++..+|+++.
T Consensus 193 ~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~-llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~--~K~l~~G~piga~~~ 269 (408)
T PRK04612 193 LEPIQGEGGVMPAAPGFLARVRALCDQHDA-LLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTL--AKALGGGFPIGAMLA 269 (408)
T ss_pred ECCccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCCchhhhhhcCCCCCEEEE--cchhcCCCceEEEEE
Confidence 7755444444432 7789999999999 899999986 32221 1111 123455554 598765444788888
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CC
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TS 345 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~ 345 (452)
++++.+. + .... ...++ +.+.....+..++++.+.+ +.+.++.+++.+++.+.|.++.. ..
T Consensus 270 ~~~~~~~-~-~~~~---------~~~t~--~~~p~~~aaa~a~L~~~~~-----~~l~~~~~~~g~~l~~~l~~l~~~~~ 331 (408)
T PRK04612 270 GPKVAET-M-QFGA---------HGTTF--GGNPLAAAVARVALRKLAS-----PQIAANVARQSAALRAGLEALNAEFG 331 (408)
T ss_pred CHHHHhh-h-cCCC---------cCCCC--CCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8776554 2 1110 01111 1223333444445555553 45688888999999999887632 23
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
++......+.++.+.+... ....+..+.+.+.+ .|+.+.. ...+.+|+.++...|
T Consensus 332 ~i~~vrg~Gl~~~i~~~~~----~~~~a~~i~~~l~~-~Gvlv~~--------------------~g~~~lRl~Ppl~it 386 (408)
T PRK04612 332 VFAQVRGRGLMLGAVLAPA----HAGQAGAILDLAAE-HGLLLLQ--------------------AGPDVLRFVPALNLT 386 (408)
T ss_pred CeeeeeccceEEEEEecCc----hhhHHHHHHHHHHH-CCeEEee--------------------CCCCEEEEcCCccCC
Confidence 3333333455666655210 01235678888876 4999842 123689999999899
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
.+||+.+++++++.+..
T Consensus 387 ~eeid~~l~~l~~~l~~ 403 (408)
T PRK04612 387 DAELADGLARLRLALAD 403 (408)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-15 Score=152.73 Aligned_cols=354 Identities=10% Similarity=0.105 Sum_probs=211.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+..... ... ......+...++.++|++++..+ .+.++|+++|++|++.++... |.+....
T Consensus 61 ~lGh~~p~i~~Ai~~q~~~~~~-~~~-~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlKla-r~~~~~~ 136 (460)
T PRK06105 61 ALGFSEQRLVEAAARQMKKLPF-YHT-FSHKSHGPVIDLAEKLVAMAPVP-MSKVFFTNSGSEANDTVVKLV-WYYNNAL 136 (460)
T ss_pred cCCCCCHHHHHHHHHHHHhCCC-eec-ccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhc
Confidence 4567788899999998875310 011 11112445677888888888643 468999999999999999853 4432111
Q ss_pred C-CCCCEEEEeCCcchhHHHHHHHHHHh------cC---cEEEEEeCCCC--C----C--Ch-HHH-HHHHHHHHhcccc
Q 012991 127 F-HRNDTVLMLHCAFQAVKKSIQAYVTR------AG---GSVVEVQLPFP--L----A--SE-EEI-INEFKKGIEKGKK 186 (452)
Q Consensus 127 ~-~~g~~Vl~~~~~~~s~~~~~~~~a~~------~g---~~v~~~~~~~~--~----~--~~-~~~-~~~l~~~i~~~~~ 186 (452)
- ..+.+|+.....|++.......+... .+ ..+..++.+.. . . +. ... .+++++.+...
T Consensus 137 g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~-- 214 (460)
T PRK06105 137 GRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAE-- 214 (460)
T ss_pred CCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHc--
Confidence 1 22468888888887754332111000 01 01222222100 0 0 00 111 56778777421
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCcc----ccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
...++.+|+++......|.+.+ +++|.++|++||+ ++|+|+++ ++|-.. .+.....+|+++++ |.+.|
T Consensus 215 ~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~-llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~g--K~lgg 291 (460)
T PRK06105 215 GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDI-LLVADEVICGFGRTGNMFGCETFGIKPDILVMS--KQLSS 291 (460)
T ss_pred CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-eEEEeccccCCCcCchhhhHHhcCCCCCeeeee--ccccc
Confidence 1357899999998888898877 8899999999999 89999998 465432 22233468988776 98876
Q ss_pred C-CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 P-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+ ..+|.+++++++.+. + .+... ..+ ......+ ...+..+..+..++++.+.+ +.+.++++++.++|.+
T Consensus 292 G~~P~~av~~~~~i~~~-~-~~~~~-~~~-~~~h~~T--~~gnpl~~aaa~a~L~~i~~-----~~l~~~v~~~g~~l~~ 360 (460)
T PRK06105 292 SYQPLSAVLMNEKVYDP-I-ADESG-KIG-TFGHGFT--ASGHPVAAAVALENLAIIEE-----RDLVGNAAERGARLQA 360 (460)
T ss_pred CcccceEEEEcHHHHHH-H-hcccc-cCc-ccccCCC--CCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHH
Confidence 5 236888888877654 1 11000 000 0000001 11122222333345555553 3567888999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCC-----hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMG-----EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
.|.++....++......+.+..+.+........ ..-+..+...+.+ .|+.+..
T Consensus 361 ~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~-~Gvl~~~--------------------- 418 (460)
T PRK06105 361 RLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHE-HGVISRA--------------------- 418 (460)
T ss_pred HHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHH-CCeEEEe---------------------
Confidence 998763333333333445565665521100000 1113567777766 4999842
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++.+|+++....|++||+.+++++.+.+++
T Consensus 419 ~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 449 (460)
T PRK06105 419 MGDTLAFCPPLIITAAQVDEMVDRFGRALDD 449 (460)
T ss_pred cCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 1258999999888999999999999998864
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=153.72 Aligned_cols=333 Identities=13% Similarity=0.167 Sum_probs=215.9
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
++..+.+.++++.+....++ +.-..+..+.-.++++.+|+++|.+ +.++|..|- ..+...+.++ +.
T Consensus 154 g~ca~~~~~~~~kygl~~cs---s~~e~G~~~~hkelE~l~A~f~g~e--~a~vF~mGf-~TNs~~~p~l--------~~ 219 (519)
T KOG1357|consen 154 GPCAEASLKSFDKYGLSRCS---SRHEAGTTEEHKELEELVARFLGVE--DAIVFSMGF-ATNSMNIPSL--------LG 219 (519)
T ss_pred CcCChHHHHHHHHhcccccc---cchhcccHHHHHHHHHHHHHhcCCc--ceEEEeccc-cccccCccee--------ec
Confidence 35556678888776433221 1112334556788999999999996 888888772 2333444443 68
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCc---eEEEEEeccCCCCcc
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKM---IRLAIIDHITSMPCV 205 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~---~~lv~~~~~~n~tG~ 205 (452)
++.-|+.+...|.|..... +..|+.++.+ ..++-..+-..|+++|...+--+++ .-+|++....++-|.
T Consensus 220 ~gsLIiSDelNHaSi~~Ga----RLSgAtiRVf----kHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~ 291 (519)
T KOG1357|consen 220 KGSLIISDELNHASLITGA----RLSGATTRVF----RHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGT 291 (519)
T ss_pred CCcceeeccccchheeccc----cccCceEEEE----ecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCe
Confidence 9999999999999976664 5579999988 5565444445555555533211222 236788888889999
Q ss_pred cccHHHHHHHHHHcCCCEEEEecccccCCccc---------cccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 206 ~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
+.+++++++++|+|.+ +++.|+||+.|+++. ..+.-++|++.+++.|+ +|..| |++..++++++. +.
T Consensus 292 iv~Lp~vvalkkkyka-yl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKS-fga~G-Gyiagsk~lid~-lr 367 (519)
T KOG1357|consen 292 IVDLPEVVALKKKYKA-YLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKS-FGAAG-GYIAGSKELIDY-LR 367 (519)
T ss_pred ecccHHHHHhhccccE-EEEeeccccccccCCCCcceeeccCCCchhheeecceehhh-ccccc-ceecCcHHHHhh-hc
Confidence 9999999999999999 999999999887632 23333689999999996 66665 888889888886 33
Q ss_pred CCceeccCCCCcccccccccccCccccc-cHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccc
Q 012991 277 HPVVSHEFGNGLPIESAWIGTRDYSAQL-VIPSAVTFVSR--FEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEIC 353 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~al~~~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 353 (452)
.+.....+ +++..+.++ ....+++.+.- ...+-++..+++.+++++++..|.+. ++.+++...
T Consensus 368 t~s~~~~y-----------at~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~d-- 433 (519)
T KOG1357|consen 368 TPSPSALY-----------ATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNND-- 433 (519)
T ss_pred cCCCceee-----------cccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCC--
Confidence 22211111 222222211 12223444331 00123455667889999999999876 777766654
Q ss_pred cceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHH
Q 012991 354 AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFR 433 (452)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~ 433 (452)
++++-+-+- .......+.+.|.++ +|.+.....+.. .......|+|.+..+|.|++++++
T Consensus 434 SpVvplll~------~~~k~~~f~r~~l~~-nigvVvvgfPat-------------pl~e~r~R~c~Sa~ht~e~ld~~l 493 (519)
T KOG1357|consen 434 SPVVPLLLY------GPAKIVAFSREMLER-NIGVVVVGFPAT-------------PLLESRARFCLSASHTKEDLDRAL 493 (519)
T ss_pred CCcceeeec------CcccccHHHHHHHhc-CceEEEEeCCCc-------------hHHHhHHHhhhcccccHHHHHHHH
Confidence 333322221 011223566566554 777755555432 134567899999999999999999
Q ss_pred HHHHHHHh
Q 012991 434 DAVILLVE 441 (452)
Q Consensus 434 ~~l~~~~~ 441 (452)
+.+.+.-+
T Consensus 494 ~~i~~~g~ 501 (519)
T KOG1357|consen 494 EVIDRVGD 501 (519)
T ss_pred HHHhhhch
Confidence 99987753
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-15 Score=148.21 Aligned_cols=345 Identities=12% Similarity=0.113 Sum_probs=204.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... ... +.....+...++.+++++++.....+.++|+++||+|++.++.. +|.+
T Consensus 53 ~lGh~~p~v~~ai~~ql~~~~-~~~--~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~Alkl-Ar~~---- 124 (421)
T PRK06777 53 NTGHRHPKVVAAVRQQLDQFT-HTA--YQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKI-ARAY---- 124 (421)
T ss_pred ccCCCCHHHHHHHHHHHhhcc-ccc--ccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHH-HHHh----
Confidence 346777889999999887531 111 11112334566777788887542246899999999999999984 4443
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh-cCc---------EEEEEeCCCCCC--ChHHHHHHHHHHHhccccCCCceEEE
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR-AGG---------SVVEVQLPFPLA--SEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~-~g~---------~v~~~~~~~~~~--~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
..+.+|+.....|++.......+... ... .+..++.+.... .....++.+++.+++.. ..+++++|
T Consensus 125 -tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~-~~~~iaav 202 (421)
T PRK06777 125 -TGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADI-APDQVAAI 202 (421)
T ss_pred -hCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhcc-CCCceEEE
Confidence 34567888888888865444322110 000 011221110000 01112566777775210 13578999
Q ss_pred EEeccCCCCccc-cc---HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCVV-IP---VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~~-~~---l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
+++......|.. .| +++|.++|++||+ ++|+|++++ +|... .......+|+++ ++|.+.++..+|+++
T Consensus 203 i~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~--~sK~l~~G~pigav~ 279 (421)
T PRK06777 203 LLEPIQGEGGFNVAPPEFMSALRTLCDEHGI-LLIADEVQTGFARTGKLFAMEYYDVKPDLIT--MAKSLGGGMPISAVV 279 (421)
T ss_pred EECCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhhCCccCCchhhhhhcCCCCCEEe--eehhhcCCCceEEEE
Confidence 999998888864 45 7899999999999 899999986 22211 111123478775 569876544489999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-C
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-T 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~ 344 (452)
.++++.+. + .+.. ...+ ...+.....+..++++.+.+ +.+.++.+++.+++.+.|.++.. .
T Consensus 280 ~~~~i~~~-~-~~~~---------~~~T--~~~~p~~~aaa~a~L~~~~~-----~~l~~~~~~~g~~l~~~L~~l~~~~ 341 (421)
T PRK06777 280 GRAEVMDA-P-APGG---------LGGT--YAGNPLAVAAALAVLDVIAE-----EKLCQRALILGAHLVEVLEKAKASC 341 (421)
T ss_pred EcHHHHhc-c-CCCC---------CCCC--CCcCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98887765 2 1110 0011 11233334444455555442 46788888999999999987621 1
Q ss_pred CcCCCcccccceEEEEcCCc-cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 345 SLGSPPEICAAMVMVGLPSR-LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
.++......+.++.+.+... ....+..-...+...+.+ .||.+.++.. .++++|+++...
T Consensus 342 ~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~~~------------------~g~~lr~~ppl~ 402 (421)
T PRK06777 342 PAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALE-EGLLLLSCGV------------------HGNVIRFLYPLT 402 (421)
T ss_pred CCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHh-CCeEEeecCC------------------CCCEEEEeCCCC
Confidence 11111122244555444210 000001113445555655 4999854321 136899999877
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 012991 424 NTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~ 441 (452)
.+++++++++++|++.+.
T Consensus 403 i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 403 IPDAQFSKALNILTRLLA 420 (421)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999998763
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=148.21 Aligned_cols=326 Identities=15% Similarity=0.182 Sum_probs=198.9
Q ss_pred hHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEE
Q 012991 79 RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSV 158 (452)
Q Consensus 79 ~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v 158 (452)
+..+.++++.+++++|.+ .+++|++||.|++++.. + .+++||+| +.+.|.....+. ....|..+
T Consensus 70 ~~s~~~lE~~va~~~G~~---~av~v~sGT~Al~ll~~-l-------~l~pGDeV--psn~~f~Tt~ah---Ie~~Gav~ 133 (450)
T TIGR02618 70 SRNFYHLERTVRELYGFK---YVVPTHQGRGAENLLSQ-I-------AIKPGDYV--PGNMYFTTTRYH---QEKNGATF 133 (450)
T ss_pred CCcHHHHHHHHHHHHCCC---eEEEcCCHHHHHHHHHH-h-------CCCCcCEE--CCceeHHHHHHH---HHhCCeEE
Confidence 444788999999999995 79999999999887653 3 36899977 667775544442 14457655
Q ss_pred EEEeCCC----C--CCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-ccccc---HHHHHHHHHHcCCCEEEEe
Q 012991 159 VEVQLPF----P--LASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIP---VRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 159 ~~~~~~~----~--~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~ivD 227 (452)
.-++.+. . ....+.+ ++++++.|+.. ...++++|.+..++|.. |..+| +++|.++|++||+ ++|.|
T Consensus 134 vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~--~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl-~vi~D 210 (450)
T TIGR02618 134 VDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEV--GADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGI-KVFYD 210 (450)
T ss_pred EeeecccccccccCCCCCCCcCHHHHHHHhccc--cCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCC-EEEEE
Confidence 5553220 0 0123555 99999999631 11245677777777765 78855 6889999999999 79999
Q ss_pred cccccCCcc-----------cccc------ccCccEEEEcCcccCcCCCCcEEEEEec-CccccCCCCCceeccCCCCcc
Q 012991 228 AAHAMGSIK-----------IDVK------EIGADFYVSNLHKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLP 289 (452)
Q Consensus 228 ~a~~~g~~~-----------~~~~------~~~~d~~~~s~~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~ 289 (452)
+|+.++.-. .++. ...+|.+++|++|..+++.| |+++.++ +++++ . ...... + .+++
T Consensus 211 aAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k-~-r~~~~~-~-eG~~ 285 (450)
T TIGR02618 211 ATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQS-A-KELVVV-F-EGMP 285 (450)
T ss_pred ccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHH-H-HHHhhh-c-CCcc
Confidence 999875311 1120 11589999999998777887 7887654 44443 1 111000 1 1100
Q ss_pred cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc--c
Q 012991 290 IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR--V 367 (452)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 367 (452)
..|......+.++..+++.... ....++....+++|.+.|.+. |+.+..|.+ ++.+++....-+- .
T Consensus 286 ----tyGgla~r~~~ala~gL~e~~~-----~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~g--gh~V~vda~~~lph~~ 353 (450)
T TIGR02618 286 ----SYGGLAGRDMEAMAIGIREAVD-----YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVG--GHAVFLDARRFLPHIP 353 (450)
T ss_pred ----ccCchhhhhHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHC-CCcccCCCC--cceEEEEhHHhCCCCC
Confidence 0122222233333334443332 234445566789999999988 998877765 5677765421000 0
Q ss_pred CChhhHHHHHHHHhhhcceEe-eecccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHHHHhccc
Q 012991 368 MGEDDALRLRGHLRVRFGVEV-PIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 368 ~~~~~~~~l~~~L~~~~gI~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~~~ 444 (452)
....-+..++-+|..+.||.. ..+....+.+. .-... ....-..+|+.++-- -|..+++.+.+++..+.++..
T Consensus 354 ~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~--~~~~~--~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~ 428 (450)
T TIGR02618 354 QDQFPAQSLAASIYVETGVRSMERGIVSAGRNN--VTGEH--HRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRD 428 (450)
T ss_pred hhhChHHHHHHHHHHHhCccEEeecceecccCC--CCCcc--cCCccceeeeccccccccHhHHHHHHHHHHHHHhhHh
Confidence 124567788888887778874 22222111000 00000 011235799998622 378999999999999987643
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-15 Score=165.63 Aligned_cols=345 Identities=13% Similarity=0.108 Sum_probs=213.1
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.|.+++.+.+...... +. + ..+...++.+++++++..+ .+.++|++|||+|+..++. ++|++
T Consensus 597 lGh~hp~v~~Ai~~q~~~l~~~-~~-~---~~~~~~elae~L~~~~p~~-~~~v~f~~SGsEA~e~Alk-lAr~~----- 664 (972)
T PRK06149 597 LGHGHPRLAAAAARQWSLLNTN-SR-F---HYAAVAEFSERLAALAPDG-LDTVFLVNSGSEANDLAIR-LAWAA----- 664 (972)
T ss_pred cCCCCHHHHHHHHHHHHhcccc-cc-c---cCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHH-HHHHh-----
Confidence 5667777999998887654221 11 1 2345677888899988532 3689999999999999998 44443
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHh----cCc------EEEEEeCCC----CC--CC-hHHHHHHHHHHHhccccCCCc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTR----AGG------SVVEVQLPF----PL--AS-EEEIINEFKKGIEKGKKDGKM 190 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~----~g~------~v~~~~~~~----~~--~~-~~~~~~~l~~~i~~~~~~~~~ 190 (452)
..+.+|++.+..|++.......+... .+. .+..++.+. +. ++ .....+++++.++.......+
T Consensus 665 tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 744 (972)
T PRK06149 665 SGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRG 744 (972)
T ss_pred cCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCc
Confidence 34567888888888654332111100 000 122222211 01 11 111234445444322222467
Q ss_pred eEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCccc-----cccccCccEEEEcCcccCcCCCC
Q 012991 191 IRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIKI-----DVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~~-----~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+.+|+++......|.+.+ +++|.++|++||+ ++|+|+++ ++|-... +.....+|+++++ |.++++..
T Consensus 745 iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~-llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~g--K~lg~G~P 821 (972)
T PRK06149 745 LAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGG-VCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMA--KGMGNGHP 821 (972)
T ss_pred eEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCC-EEEEEeehhcCCccCccchhhhhcCCCCCEEEec--ccccCCee
Confidence 899999999888899888 8999999999999 89999998 5654431 1123458998765 98877666
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|++++++++.+. + ... . .+ ..++.| +..+..+..++++.+.+ +.+.++.+++.++|++.|.+
T Consensus 822 l~av~~~~~i~~~-~-~~~-~-~~------~sT~~g--nP~~~aaala~L~~i~~-----e~l~~~~~~~G~~l~~~L~~ 884 (972)
T PRK06149 822 LGAVITRREIAEA-L-EAE-G-YF------FSSTGG--SPVSCRIGMAVLDVLRE-----EKLQENARRVGDHLKARLEA 884 (972)
T ss_pred eEEEEEcHHHHhh-h-ccC-C-cc------cCCCCC--CHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHH
Confidence 8999999888765 2 110 0 00 001111 22222333344555543 35677888888999999887
Q ss_pred HcC-CCcCCCcccccceEEEEcCC-cc-ccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 341 AWG-TSLGSPPEICAAMVMVGLPS-RL-RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 341 ~~~-~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
+.. ..++......+.++.+.+.. .. ...+......+.+.|.++ ||.+... +...+.+|
T Consensus 885 l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~-Gvl~~~~------------------g~~~~vl~ 945 (972)
T PRK06149 885 LADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLEL-GVIMQPT------------------GDHLNILK 945 (972)
T ss_pred HHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhC-CeEEeec------------------CCCCCEEE
Confidence 632 23333333446666666521 00 001112245788888775 9998532 12246899
Q ss_pred ecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
+.+....|++||+.++++|.+++.++
T Consensus 946 ~~Ppl~it~~~id~~~~~l~~~l~~~ 971 (972)
T PRK06149 946 IKPPLCLDRESADFFVDMLDRVLTEG 971 (972)
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHhh
Confidence 99998889999999999999998653
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-15 Score=149.50 Aligned_cols=338 Identities=13% Similarity=0.124 Sum_probs=206.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.|.+++.+.+....... . ....+...++.++|+++++.. .+.++|++||++|++.++. ++|++
T Consensus 85 lGh~~p~v~~Ai~~ql~~~~~~~-~---~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~Alk-lAr~~----- 153 (459)
T PRK06082 85 LGYGHPHVIEKVKEQMAKLPFSP-R---RFTNETAIECAEKLTEIAGGE-LNRVLFAPGGTSAIGMALK-LARHI----- 153 (459)
T ss_pred cCCCCHHHHHHHHHHHHhCCCcc-C---ccCCHHHHHHHHHHHHhCCCC-CCEEEECCCcHHHHHHHHH-HHHHh-----
Confidence 46677789999998887542111 1 122456778888999988642 4689999999999999988 44443
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhc------C---cEEEEEeCCC----CCCCh---HH-HHHHHHHHHhccccCCCc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRA------G---GSVVEVQLPF----PLASE---EE-IINEFKKGIEKGKKDGKM 190 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~------g---~~v~~~~~~~----~~~~~---~~-~~~~l~~~i~~~~~~~~~ 190 (452)
..+.+|+.....|++.......+.... + ..+..++.+. +..+. .. .++.+++.+++ ..+
T Consensus 154 tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~ 229 (459)
T PRK06082 154 TGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK----EGG 229 (459)
T ss_pred cCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc----CCC
Confidence 345788888887777543222111000 0 0122232110 11111 11 15678887753 247
Q ss_pred eEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCC-Cc
Q 012991 191 IRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPP-SV 261 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~-G~ 261 (452)
+++|+++...+..+.+.| +++|.++|++||+ ++|+|++++ +|-.. .+.....+|++++ .|.+.|+. .+
T Consensus 230 vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~-llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~--gKgl~gG~~P~ 306 (459)
T PRK06082 230 IGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNV-LLIIDEIPNGMGRTGEWFTHQAYGIEPDILCI--GKGLGGGLVPI 306 (459)
T ss_pred EEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhhCCCccchhhHhHhhCCCCCEEEe--cccccCCCCcc
Confidence 889999988776333445 7899999999999 899999976 33221 1222345899985 59887653 47
Q ss_pred EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 262 AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 262 G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
|.+++++++... .... + ...++ ..+..+..+..+.++.+.+ +.+.++.+++.++|.+.|.++
T Consensus 307 ~av~~~~~i~~~--~~~~----~-----~~~T~--~gnpl~~aaa~a~L~~l~~-----~~l~~~~~~~g~~l~~~L~~l 368 (459)
T PRK06082 307 AAMITKDKYNTA--AQIS----L-----GHYTH--EKSPLGCAAALATIEVIEQ-----EGLLEKVKADSQFMRERLLEM 368 (459)
T ss_pred eEEEEcHHHHhh--ccCC----C-----CCCCC--CcCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHH
Confidence 888888776542 1100 0 00111 1222233334445555553 346788899999999999875
Q ss_pred cC-CCcCCCcccccceEEEEcCCcc--ccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 342 WG-TSLGSPPEICAAMVMVGLPSRL--RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 342 ~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.. ..++......+.++.+.+.... ......-...+...+.+ .|+.+... ..+.+|+
T Consensus 369 ~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~--------------------~~~~i~~ 427 (459)
T PRK06082 369 KAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLN-NGLSFKVS--------------------QGNVIQL 427 (459)
T ss_pred HhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHh-CCCEEEec--------------------CCCEEEE
Confidence 32 3333333344666666663110 00001113456677766 49987421 1368999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++....|++||+++++++++.+..
T Consensus 428 ~Ppl~it~~eid~~~~~l~~~l~~ 451 (459)
T PRK06082 428 SPPLIITREELTQALAILEEAIAK 451 (459)
T ss_pred eCCCccCHHHHHHHHHHHHHHHHH
Confidence 999888999999999999998864
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-15 Score=149.93 Aligned_cols=352 Identities=12% Similarity=0.092 Sum_probs=209.8
Q ss_pred CCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
++.++.+..+ ..|..++.+.+++.+.+........ .....+...++.+.++++++.+ .+.+.|+++||+|++
T Consensus 44 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e 119 (427)
T TIGR00508 44 GRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMF---GGFTHKPAIELCQKLVKMTPNA-LDCVFLADSGSVAVE 119 (427)
T ss_pred CCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccc---cccCCHHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHH
Confidence 4455544332 4567778899999988765321111 1112344567888888887543 479999999999999
Q ss_pred HHHHHhhcccccCCCCC-CCEEEEeCCcchhHHHHHHHHHHhc-------C-c--EEEEEeCCCCCCC-----hHHHHHH
Q 012991 113 IVLQQIGRGFTEGRFHR-NDTVLMLHCAFQAVKKSIQAYVTRA-------G-G--SVVEVQLPFPLAS-----EEEIINE 176 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~-g~~Vl~~~~~~~s~~~~~~~~a~~~-------g-~--~v~~~~~~~~~~~-----~~~~~~~ 176 (452)
.++.. ++.++...-.+ ..+|+.....|++.......+.... + . .+..++. |... .....++
T Consensus 120 ~Alkl-Ar~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~ 196 (427)
T TIGR00508 120 VALKM-ALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPA--PQNRFDEEWNEEAITP 196 (427)
T ss_pred HHHHH-HHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCC--CCccccchhHHHHHHH
Confidence 99984 34332100112 3689999998888654332211100 0 0 0111111 1110 1112567
Q ss_pred HHHHHhccccCCCceEEEEEecc-CCCCcccc----cHHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccE
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHI-TSMPCVVI----PVRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADF 246 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~-~n~tG~~~----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~ 246 (452)
+++.+++. .+++++|+++.. +...|... .+++|.++|++||+ ++|+|++|. +|... .+.....+|+
T Consensus 197 l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~-llI~DEv~tG~Gr~G~~~~~~~~~v~pDi 272 (427)
T TIGR00508 197 LAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDI-LLIADEIATGFGRTGKLFACEHAGVVPDI 272 (427)
T ss_pred HHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCCccchhhhcCCCCCE
Confidence 77777543 357889999975 55555543 47899999999999 899999983 33221 1222346888
Q ss_pred EEEcCcccCcCCC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHH
Q 012991 247 YVSNLHKWFFCPP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQ 325 (452)
Q Consensus 247 ~~~s~~K~l~g~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~ 325 (452)
+++ +|.+.|+. .++.++.++++.+. +.... .+ ......++. .+.....+..++++.+.+ +.+.+
T Consensus 273 ~~~--gK~l~gG~~p~~a~~~~~~~~~~-~~~~~----~~-~~~~~~T~~--g~p~~~aaa~a~l~~l~~-----~~~~~ 337 (427)
T TIGR00508 273 LCV--GKALTGGYMTLSATVTTDKVAQT-ISSGE----AG-CFMHGPTFM--GNPLACAVAEASLAILLE-----GEWQK 337 (427)
T ss_pred EEe--chhhhcCcccceEEEEcHHHHHH-HhcCC----CC-ccccCCCCC--cCHHHHHHHHHHHHHHHh-----CCHHH
Confidence 875 69876542 35777777777654 21100 00 000001111 122333444455666553 23578
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCC
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGA 405 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~ 405 (452)
+.+++.++|.+.|.++............+.++.+.+. +..+...+.+.|.++ ||.+...
T Consensus 338 ~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~------~~~~~~~~~~~l~~~-Gv~~~~~-------------- 396 (427)
T TIGR00508 338 QVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMY------KPVNVEELQKKFVEQ-GVWIRPF-------------- 396 (427)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEEC------CccCHHHHHHHHHHC-CeEEEec--------------
Confidence 8899999999999876322212222223666666663 123456788888775 9998421
Q ss_pred CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 406 RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 406 ~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+|++++..+|++||+++++++++.+.+
T Consensus 397 -------~~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 397 -------GKLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred -------CCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 247999999888999999999999999865
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-15 Score=147.03 Aligned_cols=346 Identities=14% Similarity=0.092 Sum_probs=205.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC-CCcE-EEecChhHHHHHHHHHhhccccc
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD-VGEI-SLVDNATTAAAIVLQQIGRGFTE 124 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~i-~~t~g~t~a~~~~~~~l~~~~~~ 124 (452)
..|..++.+.+++.+.+..... ........+...++.++|++++.... ...+ ++++|||+|++.++. ++|.|
T Consensus 52 ~lGh~~p~i~~ai~~q~~~~~~---~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~Alk-lAr~~-- 125 (442)
T TIGR00709 52 ALGHNHPNMKQKILDYLQSGLP---LHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIK-LAKTY-- 125 (442)
T ss_pred cCCCCCHHHHHHHHHHHHhccC---ccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHH-HHHHh--
Confidence 3467788899999988765210 10111224556677888888875321 1344 456899999999998 55544
Q ss_pred CCCCCCCEEEEeCCcchhHHHHHHHHHH----hcC-----cEEEEEeCCCCC----C---C-hHH-HHHHHHHHHhcccc
Q 012991 125 GRFHRNDTVLMLHCAFQAVKKSIQAYVT----RAG-----GSVVEVQLPFPL----A---S-EEE-IINEFKKGIEKGKK 186 (452)
Q Consensus 125 ~~~~~g~~Vl~~~~~~~s~~~~~~~~a~----~~g-----~~v~~~~~~~~~----~---~-~~~-~~~~l~~~i~~~~~ 186 (452)
..+.+|+....+|++.......+.. +.+ ..+..++.+... + + +.. ..+.+++.++....
T Consensus 126 ---tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (442)
T TIGR00709 126 ---TGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVES 202 (442)
T ss_pred ---cCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhcc
Confidence 3456899988888886655433211 011 112333321100 0 0 001 12334444432111
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
...++++|+++.+.+..|.+.+ +++|.++|++||+ ++|.|+++. +|-.. .+.....+|++++ +|.+.+
T Consensus 203 ~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~-llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~~ 279 (442)
T TIGR00709 203 GVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDI-KLILDEVQAGFGRSGTMFAFEHAGIEPDFVVM--SKAVGG 279 (442)
T ss_pred CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCCCCchhHHHHcCCCCcEEEE--cccccC
Confidence 1356888999888888887753 7789999999999 899999976 43221 1122345899986 598776
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
+..+|.++++++ ... + .+.. . .. +...+..+..+..++++.+.+ +.+.++.+++.+++.+.
T Consensus 280 G~Pigav~~~~~-~~~-~-~~~~---~------~~--T~~gnpla~aaa~a~L~~i~~-----~~l~~~~~~~g~~l~~~ 340 (442)
T TIGR00709 280 GLPLAVLLIAPE-FDA-W-QPAG---H------TG--TFRGNQLAMVTGTEALNYWKD-----DNLAQNAQERGERITSF 340 (442)
T ss_pred CcccEEEEEchH-Hhc-c-CCCc---C------CC--CCCcCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHH
Confidence 555888888877 443 1 1110 0 01 112223333444445555543 34677888889999998
Q ss_pred HHHHc-CCCcCCCcccccceEEEEcCCccccC--------ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 338 LANAW-GTSLGSPPEICAAMVMVGLPSRLRVM--------GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 338 L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
|.++. ...++......+.++.+.+.+..... +..-...+...+.+ .|+.+....
T Consensus 341 L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~---------------- 403 (442)
T TIGR00709 341 LDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFE-NGLLLETGG---------------- 403 (442)
T ss_pred HHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHH-CCeEEeecC----------------
Confidence 88753 23333333344666666663210000 00123567777766 499884211
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++.+|+.++...|++||+.+++++.+.+.+
T Consensus 404 --~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 404 --REGEVFRLLCPITIDQEECEEGISRFKQAVEE 435 (442)
T ss_pred --CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12468999999999999999999999999864
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-15 Score=149.03 Aligned_cols=355 Identities=12% Similarity=0.111 Sum_probs=209.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+...... .. +.....+...++.++|+++++.++.+.+.|++|||+|++.++. ++|.|++..
T Consensus 55 ~lGh~~p~v~~Ai~~ql~~~~~~-~~-~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~Alk-lAr~~~~~~ 131 (449)
T PRK07481 55 NVGHNREEVKEAIVRQLDELEYY-ST-FDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALK-LARQYWKVR 131 (449)
T ss_pred cCCCCCHHHHHHHHHHHHhccce-ec-ccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHH-HHHHHHHhc
Confidence 45677788999999887653111 01 0011234567788888888743224689999999999999998 455553111
Q ss_pred CCC-CCEEEEeCCcchhHHHHHHHHHHhc------C---cEEEEEeCCC----CCC--ChH---HH-HHHHHHHHhcccc
Q 012991 127 FHR-NDTVLMLHCAFQAVKKSIQAYVTRA------G---GSVVEVQLPF----PLA--SEE---EI-INEFKKGIEKGKK 186 (452)
Q Consensus 127 ~~~-g~~Vl~~~~~~~s~~~~~~~~a~~~------g---~~v~~~~~~~----~~~--~~~---~~-~~~l~~~i~~~~~ 186 (452)
-++ +.+|+....+|++.......+.... + ..+..++.+. +.+ +.. .. .+.+++.+...
T Consensus 132 g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~-- 209 (449)
T PRK07481 132 GQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQ-- 209 (449)
T ss_pred CCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 112 4678888888888543222111000 0 1122232211 111 111 12 45667766421
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
..+++.+|+++......|.+.| ++++.++|++||+ ++|.|+++. +|-.. .+.....+|+++++ |.+.|
T Consensus 210 ~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~-llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~g 286 (449)
T PRK07481 210 GPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGI-LLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLA--KGITS 286 (449)
T ss_pred CCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCC-EEEEeehhhCcCcCchhhHhhhcCCCCCEEEEe--ecccC
Confidence 1367999999999888888765 7899999999999 999999975 43321 22233468999886 98876
Q ss_pred CC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 PP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+. .+|.+++++++.+. + .+.. ......... +|-. ..-+++.+++..++.+ ..+.+.++.+++.+++.+
T Consensus 287 G~~Pi~av~~~~~i~~~-~-~~~~--~~~~~~~h~----~T~~-gnpl~~aaa~a~L~~l--~~~~l~~~~~~~g~~l~~ 355 (449)
T PRK07481 287 GYVPLGATMVNARIADA-F-EANA--DFGGAIMHG----YTYS-GHPVACAAALATLDIV--VREDLPANAAKRGAYLLE 355 (449)
T ss_pred CCcCceEEEEcHHHHHH-H-hccC--ccccccccC----CCCC-CCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHH
Confidence 53 47888888877664 1 1110 000000001 1111 1222233344444333 234577888889999999
Q ss_pred HHHHHcC-CCcCCCcccccceEEEEcCCccccCC-----hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 337 MLANAWG-TSLGSPPEICAAMVMVGLPSRLRVMG-----EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 337 ~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
.|.++.. ..++......+.++.+.+.......+ ..-...+.+.+.++ |+.+...
T Consensus 356 ~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~------------------- 415 (449)
T PRK07481 356 GLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVAREN-GVLVRPS------------------- 415 (449)
T ss_pred HHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhC-CeEEEec-------------------
Confidence 9887632 33333333345566666531100000 11235677777664 9988421
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++.+|+++....|++||+.+++++.+.++.
T Consensus 416 --g~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 445 (449)
T PRK07481 416 --GTKIILSPPLVIQREDVDRIVDALDAGLSA 445 (449)
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 236899998888999999999999999864
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-15 Score=145.64 Aligned_cols=326 Identities=14% Similarity=0.129 Sum_probs=194.1
Q ss_pred hHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHH-HHHHHHhcCcE
Q 012991 79 RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKS-IQAYVTRAGGS 157 (452)
Q Consensus 79 ~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~-~~~~a~~~g~~ 157 (452)
+..+.++++.+++++|.+ .++.|++||.|++++.. + .+++||+| +...|.....+ + ...|..
T Consensus 77 d~s~~~LE~~vAe~lG~e---~aV~v~sGTaAl~ll~~-l-------~v~pGd~V--p~n~~f~Tt~ahI----~~~Ga~ 139 (460)
T PRK13237 77 SRNFYHLEETVQEYYGFK---HVVPTHQGRGAENLLSR-I-------AIKPGQYV--PGNMYFTTTRYHQ----ELNGGI 139 (460)
T ss_pred CCcHHHHHHHHHHHHCCC---eEEEeCCHHHHHHHHHH-h-------CCCCcCEE--CCccchHhhHHHH----HhCCcE
Confidence 334788999999999995 79999999999998644 3 36889965 55555544333 3 335664
Q ss_pred EEEEeCC------CCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-cccc---cHHHHHHHHHHcCCCEEEE
Q 012991 158 VVEVQLP------FPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVI---PVRKLVKICRDEGVDQVFV 226 (452)
Q Consensus 158 v~~~~~~------~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~---~l~~i~~l~~~~~~~~~iv 226 (452)
+.-+..+ ......+.+ ++++++.|+... ..++.+|.+..+.|.. |... ++++|.++|++||+ .+|.
T Consensus 140 fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl-~Vi~ 216 (460)
T PRK13237 140 FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGI-KVFF 216 (460)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCC-EEEE
Confidence 4433211 001123556 999999996321 2355666666667776 6665 57899999999999 7999
Q ss_pred ecccccCCcc-----------cccc------ccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcc
Q 012991 227 DAAHAMGSIK-----------IDVK------EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLP 289 (452)
Q Consensus 227 D~a~~~g~~~-----------~~~~------~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (452)
|+|+.++... .++. ....|.+++|++|.+.++.| |+++.+++.+...+ ..+...+.|...
T Consensus 217 DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~-r~~~~~~eG~~t- 293 (460)
T PRK13237 217 DATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEA-KELVVVYEGMPS- 293 (460)
T ss_pred ECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHH-HHhccccCCCcC-
Confidence 9999887321 1111 11479999999998877776 88888765443301 111000011100
Q ss_pred cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCcc--cc
Q 012991 290 IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRL--RV 367 (452)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 367 (452)
.|..+..-+.++..++.... ...+.++.....++|.+.|.+. |+.++.|.+ ++-+++....-. -.
T Consensus 294 -----ygg~~grd~~alAvgl~E~~-----~~~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~g--gH~v~vda~~~lph~~ 360 (460)
T PRK13237 294 -----YGGMAGRDMEAMAIGIEESV-----QYEYIEHRVGQVRYLGEKLLAA-GVPIVEPVG--GHAVFLDARRFLPHLP 360 (460)
T ss_pred -----CCChhhhHHHHHHhHHHhhc-----hHHHHHHHHHHHHHHHHHHHHC-CCceecCCC--ceEEEEEhHHhCCCCC
Confidence 01111112223333333222 1245555667889999999887 898888765 444544321100 00
Q ss_pred CChhhHHHHHHHHhhhcceEee-ecccCCCCCCCCCCCCCCCCCCccceEEecccc-cCCHHHHHHHHHHHHHHHhccc
Q 012991 368 MGEDDALRLRGHLRVRFGVEVP-IHYQAPKDDGQPQAGARDKDGIITGYARISHQV-YNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 368 ~~~~~~~~l~~~L~~~~gI~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~~di~~l~~~l~~~~~~~~ 444 (452)
....-+..++-+|..+.||... .+....+.+. .-... ....-..+|+.+.- .-|.+++|.+.++|..+.++..
T Consensus 361 ~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~--~~~~~--~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~ 435 (460)
T PRK13237 361 QDQFPAQALAAELYIESGVRSMERGIVSAGRDP--KTGEN--HYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRE 435 (460)
T ss_pred cccChHHHHHHHHHHHhCcCeEeecceecccCC--CCCcc--CCCccceeeeccccccccHHHHHHHHHHHHHHHHhHh
Confidence 1245677888888877788742 1211111000 00000 01113579999862 2378999999999999987643
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=141.51 Aligned_cols=290 Identities=14% Similarity=0.104 Sum_probs=192.0
Q ss_pred HHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEEE
Q 012991 83 LESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEV 161 (452)
Q Consensus 83 ~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~ 161 (452)
.+++.++++--+.. ++++.++.|+.+.+.+++++. +.|| ++|++..|+|...... |...+++++.+
T Consensus 72 k~ls~a~~~dkpLt-~dnic~GvGsDE~ID~iiR~~--------c~PGkeKIl~cPPtysMY~v~----A~iNd~eVvkv 138 (375)
T KOG0633|consen 72 KRLSDALAQDKPLT-SDNICVGVGSDELIDLIIRCV--------CDPGKEKILDCPPTYSMYVVD----AAINDAEVVKV 138 (375)
T ss_pred chhhhhcccCCCCC-ccceEEecCcHHHHHHHHhhe--------ecCCccceeecCCcceeEEEE----eecCCceEEEe
Confidence 44555555555554 789999999999999999976 5777 7999999988653222 34568899998
Q ss_pred eCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc-CCCEEEEeccccc--C--Cc
Q 012991 162 QLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE-GVDQVFVDAAHAM--G--SI 235 (452)
Q Consensus 162 ~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~-~~~~~ivD~a~~~--g--~~ 235 (452)
+ .+.+..+ ++.+.+.++. ...++++++++|.||||..+..+.|.++.+-- |. ++++|+|+-- | ..
T Consensus 139 p----l~pdF~lnvdai~evl~~----ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~ng-lVVvDEAYidFsg~~S~ 209 (375)
T KOG0633|consen 139 P----LNPDFSLNVDAIAEVLEL----DSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNG-LVVVDEAYIDFSGVESR 209 (375)
T ss_pred c----CCCCccccHHHHHHHHhc----cccceEEEEcCCCCCCcccccHHHHHHHHhCCCCc-EEEEeeeeEeecccccc
Confidence 4 4556666 8999998875 46899999999999999999999999988754 67 7999998631 2 11
Q ss_pred cccccccCccEEEEcCcccCcCCCC--cEEEEEecCcccc--CCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 236 KIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSS--DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 236 ~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
-.-+.+..--++..+++|. +|..| +|+.+...++.+. .+..|+ ..+. .+-.+|++
T Consensus 210 ~~lV~kYpNLivlqTlSKs-fGLAGiRvG~~~~~~~ia~iln~~KaPY-----------------NiS~---~~s~~AL~ 268 (375)
T KOG0633|consen 210 MKLVKKYPNLIVLQTLSKS-FGLAGIRVGYGAFPLSIAEILNRAKAPY-----------------NISV---AGSVAALA 268 (375)
T ss_pred chHhHhCCceeehhhhhhh-cCcceeEeecccccHHHHHHHHhccCCc-----------------cccc---hhHHHHHH
Confidence 1112222223455689997 88888 5666666655553 112222 1111 11122333
Q ss_pred HHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEee
Q 012991 312 FVSRF-EGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVP 389 (452)
Q Consensus 312 ~~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~ 389 (452)
.+..- ....+..+..+.+.+.+|.+.|.++++.. ++++.. ++|+.+.+.+. ..+. ++.++..+..++|+.|+
T Consensus 269 Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~d--aNFiLi~v~~~---~n~~-akkly~q~at~~gVvVR 342 (375)
T KOG0633|consen 269 ALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSD--ANFILIEVTGG---DNGM-AKKLYKQDATKMGVVVR 342 (375)
T ss_pred hcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccc--ccEEEEEEcCC---CcHH-HHHHHHHHHHhcceEEE
Confidence 22210 11356667777788888999999887654 333333 77888887521 1122 34455555566899997
Q ss_pred ecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 390 IHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
..... ..-.|++|++.+ |+|+-..+++.++..
T Consensus 343 frgse---------------~~c~G~lRitvG---t~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 343 FRGSE---------------EGCKGYLRITVG---TPEENTVLMKCLKQF 374 (375)
T ss_pred EcCCc---------------cccceeEEEEcC---CcccchHHHHHHHhh
Confidence 42221 123589999999 888888898888765
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=142.72 Aligned_cols=329 Identities=13% Similarity=0.094 Sum_probs=207.2
Q ss_pred hhhhhhHHHHHHHHHHHhHhC----CC-CCC-cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHH
Q 012991 74 YFNSLRKGILESRAAVKDLIN----AD-DVG-EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSI 147 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~----~~-~~~-~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~ 147 (452)
..|+...++-++...+.+..+ .+ ..+ .+.+|+|.|.+++.++..+ +++||.|++...+|.+.....
T Consensus 94 lQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~--------~N~gd~vlie~~ty~~AL~s~ 165 (472)
T KOG0634|consen 94 LQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTL--------INRGDHVLIEEYTYPSALQSM 165 (472)
T ss_pred hccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHh--------hcCCCceEEecccchHHHHhc
Confidence 446667777788888888665 22 122 7899999999999999987 699999999999999876665
Q ss_pred HHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccC---CCceEEE-EEeccCCCCcccccHH---HHHHHHHHcC
Q 012991 148 QAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKD---GKMIRLA-IIDHITSMPCVVIPVR---KLVKICRDEG 220 (452)
Q Consensus 148 ~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~---~~~~~lv-~~~~~~n~tG~~~~l~---~i~~l~~~~~ 220 (452)
+ ..|++++.+ +.++++.+++.|++.+..-.-. .+++.++ .++..+||||..++++ +|.+||++|+
T Consensus 166 ~----a~gv~~ipv----~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyD 237 (472)
T KOG0634|consen 166 E----ALGVKIIPV----KMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYD 237 (472)
T ss_pred c----ccCceEEec----cccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 4 458777777 4466666689999988743221 2446554 6788899999999865 7999999999
Q ss_pred CCEEEEecccccCCcc--------------------------ccccccCccEEEEcCcccCcCC-CCcEEEEEecCcccc
Q 012991 221 VDQVFVDAAHAMGSIK--------------------------IDVKEIGADFYVSNLHKWFFCP-PSVAFLYCRKSILSS 273 (452)
Q Consensus 221 ~~~~ivD~a~~~g~~~--------------------------~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~~~~~~~~~ 273 (452)
+ +++.|+.+.+..+. ++++-.|-.+-.-||+| +.+| .-+|++.+++-++++
T Consensus 238 f-LIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSK-iiaPGlRlG~it~~~~~l~r 315 (472)
T KOG0634|consen 238 F-LIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSK-IIAPGLRLGWITGNSLFLKR 315 (472)
T ss_pred E-EEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhh-hhcCcceeEEeecCHHHHHH
Confidence 9 99999887643221 11111122234458999 4554 338998888877765
Q ss_pred CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC----HHHHHHHHHHHHHHHHHHHHHH-cC--CCc
Q 012991 274 DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG----IDGIMQRNHEQALKMARMLANA-WG--TSL 346 (452)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g----~~~~~~~~~~~~~~l~~~L~~~-~~--~~~ 346 (452)
+ ... .+. .+..|+...+..+.+-+..+.+. | +..++..+..++..+..+|.+- |. .++
T Consensus 316 -i-l~~------ae~-----~t~~pSg~sq~iv~a~l~~wgqe--G~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~ 380 (472)
T KOG0634|consen 316 -I-LDL------AEV-----ATSGPSGFSQGIVYAMLKRWGQE--GFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEY 380 (472)
T ss_pred -H-hhh------cce-----eecCcccccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEE
Confidence 1 111 000 01123433433333334333321 3 3344555556666666666553 22 234
Q ss_pred CCCcccccceEEEEcCCccc-cCChhh-HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 347 GSPPEICAAMVMVGLPSRLR-VMGEDD-ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
..|.+ +.|+|+.++-... .+...+ ..++...+..++||.+.++..+...- .. ...+-++|++++++
T Consensus 381 ~~P~a--GmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p----~~-----s~~kiffRls~a~a- 448 (472)
T KOG0634|consen 381 HPPKA--GMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDP----ES-----SWSKIFFRLSIAFA- 448 (472)
T ss_pred ecCCc--ceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcC----cc-----CCCcceEEEEeecC-
Confidence 44444 8899999961111 111233 44555544556799997776653210 00 11224999999875
Q ss_pred CHHHHHHHHHHHHHHHhcccccc
Q 012991 425 TLEDYEKFRDAVILLVEEGQVCQ 447 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~~~~~~ 447 (452)
..++++..++++...+++...++
T Consensus 449 ~~e~l~~g~~rf~~~ike~f~~~ 471 (472)
T KOG0634|consen 449 EPEKLDEGIERFGSVIKEHFITN 471 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcc
Confidence 56688888888888887766554
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-15 Score=148.79 Aligned_cols=352 Identities=13% Similarity=0.137 Sum_probs=202.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.|.+++.+.+..... .+.. .....+...++.++++++++.. .+.++|+++||+|+..++... |.|+...
T Consensus 67 ~lGh~hp~v~~A~~~q~~~~~~-~~~~-~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AiklA-r~~~~~~ 142 (460)
T PRK12403 67 NLGYGRKDLAAAAARQMEQLPY-YNMF-FHTTHPAVIELSELLFSLLPGH-YSHAIYTNSGSEANEVLIRTV-RRYWQVL 142 (460)
T ss_pred cCCCCCHHHHHHHHHHHHhCCC-eecc-cccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhh
Confidence 3567777799999998876421 1111 1123455778889999988742 468999999999999999854 4332100
Q ss_pred CCCCC-EEEEeCCcchhHHHHHHHHHHhc-----C---cEEEEEeCCCCC----C----ChHHH-HHHHHHHHhccccCC
Q 012991 127 FHRND-TVLMLHCAFQAVKKSIQAYVTRA-----G---GSVVEVQLPFPL----A----SEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 127 ~~~g~-~Vl~~~~~~~s~~~~~~~~a~~~-----g---~~v~~~~~~~~~----~----~~~~~-~~~l~~~i~~~~~~~ 188 (452)
-++++ .|+....+||+.......+.... + ..+..++.+... + ..... .+.+++.+.+. ..
T Consensus 143 g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~ 220 (460)
T PRK12403 143 GKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL--GA 220 (460)
T ss_pred CCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh--CC
Confidence 12333 44455556665432221111000 0 012233221100 0 01111 45666665421 13
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
+++++|+++......|.+.| +++|.++|++||+ ++|+|++++ +|-.. .+.....+|++++ .|.+.|+.
T Consensus 221 ~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~-lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~--gK~lggG~ 297 (460)
T PRK12403 221 ENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDV-LLCADEVIGGFGRTGEWFAHEHFGFEPDTLSI--AKGLTSGY 297 (460)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCchhhhhhhcCCCCCeEEE--cccccccc
Confidence 57889999999888899887 8999999999999 899999985 43322 1222335899985 59887663
Q ss_pred -CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHH
Q 012991 260 -SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH-EQALKMARM 337 (452)
Q Consensus 260 -G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~-~~~~~l~~~ 337 (452)
.+|.+++++++.+. +. +. +.......++ ..+.....+..++++.+.+ +.+.++.+ ++.+++.+.
T Consensus 298 ~Piga~v~~~~i~~~-~~-~~-----~~~~~~~~T~--~gnPl~~Aaala~L~~i~~-----~~l~~~~~~~~g~~l~~~ 363 (460)
T PRK12403 298 VPMGGLVLSKRIAEA-LV-EQ-----GGVFAHGLTY--SGHPVAAAVAIANLKALRD-----EGVVTRVKDDTGPYLQRC 363 (460)
T ss_pred cceEEEEECHHHHHH-Hh-cC-----CCccccCCCC--CCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHH
Confidence 47777788776654 11 10 0000000111 1222233334445555553 23567775 788888888
Q ss_pred HHHHc-CCCcCCCcccccceEEEEcCCc--cccC-Ch--hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 338 LANAW-GTSLGSPPEICAAMVMVGLPSR--LRVM-GE--DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 338 L~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~--~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
|.++. ...++......+.++.+.+... .... .. .-...+...+.++ |+.+...
T Consensus 364 L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-------------------- 422 (460)
T PRK12403 364 LREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEE-GVIIRST-------------------- 422 (460)
T ss_pred HHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhC-CEEEEec--------------------
Confidence 87642 2233333333456666655311 0000 00 0123344555564 9998521
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.+.+|+++....|++|++.+++++++++++-
T Consensus 423 -~~~~~l~Ppl~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 423 -LGRMIMAPALVAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1468999998889999999999999999764
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-15 Score=148.92 Aligned_cols=346 Identities=12% Similarity=0.147 Sum_probs=201.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+......... ....+...++.++|+++++....+.+.|++|||+|++.++. ++|.+
T Consensus 67 ~lGh~~p~v~~ai~~q~~~~~~~~~~---~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~Alk-lAr~~---- 138 (451)
T PRK06918 67 NVGHSHPKVKEALHKQVDQYIHTGFN---VMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVK-IARKY---- 138 (451)
T ss_pred CCCCCCHHHHHHHHHHHHhccCcccc---ccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHH-HHHHH----
Confidence 34677788999999988653111111 11234567788888888864312589999999999999998 45544
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh-c------C---cEEEEEeCCC----CCC--C-h-HH-HHHHHHHHHhccccC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR-A------G---GSVVEVQLPF----PLA--S-E-EE-IINEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~-~------g---~~v~~~~~~~----~~~--~-~-~~-~~~~l~~~i~~~~~~ 187 (452)
..+.+|+....+||+.......+... . + ..+..++.+. +.. . . .. ..+.++..+... ..
T Consensus 139 -tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (451)
T PRK06918 139 -TKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISE-VA 216 (451)
T ss_pred -hCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhh-cC
Confidence 34567888888888865444322110 0 0 1122232211 000 0 0 11 134455544210 01
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc--ccccccc--CccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI--KIDVKEI--GADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~--~~~~~~~--~~d~~~~s~~K~l~g~ 258 (452)
.+++.+|+++......|.+.| +++|.++|++||+ ++|.|+++. ++.. .+....+ .+|++ +++|.+.++
T Consensus 217 ~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gi-llI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~~G 293 (451)
T PRK06918 217 PETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGI-LFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLGAG 293 (451)
T ss_pred CCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhcCC
Confidence 357899999988777787654 6789999999999 799999975 3222 1222222 37866 566987655
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
.-+|++++++++.+. + .+.. . .. +...+.....+..++++.+.+ +.+.++.+++.+++.+.|
T Consensus 294 ~pig~v~~~~~i~~~-~-~~~~---~------~~--T~~g~~l~~aaa~a~l~~i~~-----~~~~~~~~~~g~~l~~~l 355 (451)
T PRK06918 294 VPISGVIGRKEIMDE-S-APGE---L------GG--TYAGSPLGCAAALAVLDIIEK-----ENLNDRAIELGKVVMNRF 355 (451)
T ss_pred CccEEEEEcHHHHhc-c-CCCC---c------Cc--CCCcCHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHH
Confidence 558999998887765 2 1110 0 00 112222333444445666653 234566677777888877
Q ss_pred HHHc-CCCcCCCcccccceEEEEcC-Cc-cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 339 ANAW-GTSLGSPPEICAAMVMVGLP-SR-LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
.++. ...........+.++.+.+. +. ....+......+.+.+.+ .||.+..+.. .+++
T Consensus 356 ~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~Gvlv~~~~~------------------~~~~ 416 (451)
T PRK06918 356 EEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANK-RGLLLLSAGT------------------YGNV 416 (451)
T ss_pred HHHHhhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHH-CCeEEeecCC------------------CCCE
Confidence 7652 22221111122444443331 10 000112235567777766 4999854311 1368
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|++++...|+++|+.++++|++.++.
T Consensus 417 lrl~p~l~~t~~~id~~l~~l~~~l~~ 443 (451)
T PRK06918 417 IRVLMPLVITDEQLEEGLTIIEESLQA 443 (451)
T ss_pred EEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 999998767899999999999998864
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-15 Score=149.36 Aligned_cols=354 Identities=16% Similarity=0.144 Sum_probs=210.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... .... +.....+...++.+++++++..+ .+.+.|++|||+|++.++. ++|.+....
T Consensus 64 ~lGh~~p~v~~Ai~~q~~~~~-~~~~-~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~Alk-lAr~~~~~~ 139 (466)
T PRK07036 64 NVGYGREEMADAIADQARRLP-YYTP-FGDMTNAPAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALR-FVHYYFNVR 139 (466)
T ss_pred cCCCCCHHHHHHHHHHHHhCc-cccc-ccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHH-HHHHHHHhc
Confidence 346777889999998876531 1111 11012445677888888887542 4689999999999999998 455542111
Q ss_pred C-CCCCEEEEeCCcchhHHHHHHHHHHhcC---------cEEEEEeCCCCC----C----ChHH-HHHHHHHHHhccccC
Q 012991 127 F-HRNDTVLMLHCAFQAVKKSIQAYVTRAG---------GSVVEVQLPFPL----A----SEEE-IINEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~g---------~~v~~~~~~~~~----~----~~~~-~~~~l~~~i~~~~~~ 187 (452)
- ....+|+....+|++.......+....+ ..+..++.+... . .... ..+.+++.+... .
T Consensus 140 g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~ 217 (466)
T PRK07036 140 GRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSL--G 217 (466)
T ss_pred CCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHc--C
Confidence 1 1236888888888885433221111000 113333322110 0 0111 145666666421 1
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc--cc---ccccCccEEEEcCcccCcC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK--ID---VKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~~---~~~~~~d~~~~s~~K~l~g 257 (452)
.+++++|+++......|.+.| +++|.++|++||+ ++|+|+++. +|-.. +. .....+|+++++ |.+.|
T Consensus 218 ~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~-llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~g--K~l~g 294 (466)
T PRK07036 218 ADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDI-LYISDEVVTGFGRLGHFFASEAVFGIQPDIITFA--KGLTS 294 (466)
T ss_pred CCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeechhCCCcCchhhhhhhhcCCCCCEEEEc--ccccc
Confidence 467999999999888898877 8899999999999 899999984 54432 11 223468998886 98876
Q ss_pred CC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 PP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+. .+|.+++++++.+. +..... .+.......++.+ +..+..+..+.++.+.+ +.+.++.+++.++|.+
T Consensus 295 G~~Pi~av~~~~~i~~~-~~~~~~---~~~~~~~~~T~~g--npl~~aaa~a~Le~i~~-----~~l~~~~~~~g~~l~~ 363 (466)
T PRK07036 295 GYQPLGAVIISERLLDV-ISGPNA---KGNVFTHGFTYSG--HPVACAAALKNIEIMER-----EGLCEHVREVGPYFEE 363 (466)
T ss_pred CccccEEEEEcHHHHHH-HhcccC---cCcccccCCCCCC--CHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 52 47888888887764 211100 0000000111112 22223333344555442 3567888899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccC-----ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVM-----GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
.|.++....++......+.++.+.+.+..... +..-...+.+.+.++ ||.+..
T Consensus 364 ~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~--------------------- 421 (466)
T PRK07036 364 RLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQER-GLLVRP--------------------- 421 (466)
T ss_pred HHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHC-CcEEee---------------------
Confidence 99765332222223344666666653110000 011235677777664 998842
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+.+|+++....|++||+.+++++.+.++.
T Consensus 422 ~~~~~~l~Ppl~it~~~id~~~~~l~~al~~ 452 (466)
T PRK07036 422 LEHLCVLSPPLIITRAQIDEIVAILRAAIEE 452 (466)
T ss_pred cCCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 1247899998888999999999999988865
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-15 Score=143.19 Aligned_cols=324 Identities=15% Similarity=0.164 Sum_probs=205.2
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
|..++.|.+++++.+..- ..+ . .+++..-++-+.|.+.++. .+.|-|+++||+|.+.+++ ++|.| .
T Consensus 68 GH~~p~V~~Av~~~l~~G----~~f-g-~Pte~Ei~~Aell~~~~p~--~e~vrfvnSGTEAtmsAiR-lARa~-----T 133 (432)
T COG0001 68 GHAHPAVVEAVQEQLERG----LSF-G-APTELEVELAELLIERVPS--IEKVRFVNSGTEATMSAIR-LARAY-----T 133 (432)
T ss_pred CCCCHHHHHHHHHHHHhc----CCC-C-CCCHHHHHHHHHHHHhcCc--ccEEEEecchhHHHHHHHH-HHHHh-----h
Confidence 467777999999987652 222 1 1345556677888888876 3799999999999999998 56654 5
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCc-----------------EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGG-----------------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-----------------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
.+++|+..+.+|++....+-.-+. .|. .+..+ |.++ ++.+++++++. ++++
T Consensus 134 gR~kIikF~G~YHG~~D~~lv~ag-sg~~t~g~p~s~Gvp~~~a~~ti~~----~yND----~~al~~~~~~~---g~~I 201 (432)
T COG0001 134 GRDKIIKFEGCYHGHSDSLLVKAG-SGAATLGSPSSPGVPADVAKHTLVL----PYND----LEALEEAFEEY---GDDI 201 (432)
T ss_pred CCCeEEEEcCCCCCCccHHHhhcC-cCcccCCCCCCCCCChhhhccEEEe----cCCC----HHHHHHHHHHc---CCcE
Confidence 678999999999998777644211 111 11122 2233 78888888764 5789
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCccc----cccccCccEEEEcCcccCcCCCCcEE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSIKI----DVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~~~----~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
++|+++......|.+.| ++.|.++|+++|+ ++|.|++....-.++ ++....+|+.+++ |.++|+..+|.
T Consensus 202 AaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~-lLI~DEViTGFR~~~gGaq~~~gi~PDlttlG--KiIGGGlP~ga 278 (432)
T COG0001 202 AAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGA-LLIFDEVITGFRVALGGAQGYYGVEPDLTTLG--KIIGGGLPIGA 278 (432)
T ss_pred EEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCc-EEEEecchhhcccCCcccccccCcCcchhhhh--hhhcCCcceee
Confidence 99999988888899887 6689999999999 999999875322221 2333457887776 98888777899
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCcc--ccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYS--AQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
+-.+.++.+. ..|.- ..+..||.+.. ++.+-.++++.+.+ .+...+++.++.+.|.+.|++.
T Consensus 279 ~gGr~eiM~~--~~p~g----------~vyqaGT~sgnplamaAG~atl~~l~~----~~~~y~~l~~~~~~L~~gl~~~ 342 (432)
T COG0001 279 FGGRAEIMEQ--LAPLG----------PVYQAGTLSGNPLAMAAGLATLEELMT----EEGVYERLDALGERLAEGLRAA 342 (432)
T ss_pred eccHHHHHhh--hCCCC----------CccccCCCCCcHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHHH
Confidence 8899998885 22221 11122444332 23333334444443 1235667777777777777654
Q ss_pred c---CCCcCCCcccccceEEEEcCC--ccccC-----ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 342 W---GTSLGSPPEICAAMVMVGLPS--RLRVM-----GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 342 ~---~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
. ++.+.... .+.++.+.+-+ ..... +......+...|.++ ||++++...
T Consensus 343 ~~~~g~~~~v~~--~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~~------------------ 401 (432)
T COG0001 343 AERHGIPLTVNR--VGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQF------------------ 401 (432)
T ss_pred HHHhCCCeEEee--ecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCccc------------------
Confidence 2 44332211 12333333211 10000 011123455566565 999863221
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...=+|.. +|++||+++++++.++++.
T Consensus 402 --ea~flS~a--hte~di~~~~~a~~~~~~~ 428 (432)
T COG0001 402 --EAGFLSTA--HTEEDIDRTLEAADEAFKE 428 (432)
T ss_pred --cceeeecc--cCHHHHHHHHHHHHHHHHH
Confidence 23344544 5999999999999988764
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-15 Score=149.23 Aligned_cols=351 Identities=9% Similarity=0.119 Sum_probs=210.4
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC-
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR- 126 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~- 126 (452)
.|..++.|.+++.+.+.... ..... ....+...++.++|++++... .+.++|++|||+|++.++. ++|.+....
T Consensus 70 lGh~~p~v~~Ai~~ql~~l~-~~~~~--~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~Alk-lAr~~~~~~g 144 (460)
T PRK06916 70 HGHQVPELDEAIREQLNKIA-HSTLL--GLANVPSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIK-MAFQYWQNKG 144 (460)
T ss_pred cCCCCHHHHHHHHHHHHhCC-Ccccc--ccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHH-HHHHHHHhcC
Confidence 46788889999999887531 11111 112344567888888887542 3689999999999999998 445432111
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhcC---------cEEEEEeCCC----CC--CCh---HHHHHHHHHHHhccccCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRAG---------GSVVEVQLPF----PL--ASE---EEIINEFKKGIEKGKKDG 188 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g---------~~v~~~~~~~----~~--~~~---~~~~~~l~~~i~~~~~~~ 188 (452)
...+.+|+....+|++.......+..... ..+..++.+. +. +.+ ...++.+++.++.. .
T Consensus 145 ~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~ 221 (460)
T PRK06916 145 KPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEK---H 221 (460)
T ss_pred CCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhC---C
Confidence 12346899999988886544322111000 1122232210 00 101 11267777777532 4
Q ss_pred CceEEEEEec-cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDH-ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
+++.+|+++. +....|.+.+ +++|.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.+.|+
T Consensus 222 ~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~-llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~g--K~l~gG 298 (460)
T PRK06916 222 EEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNV-LFITDEVATGFGRTGKMFACEHENVTPDIMTAG--KGLTGG 298 (460)
T ss_pred CcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCC-EEEeechhhCCCcCchhhHHHhcCCCCCeeeee--hhhhcC
Confidence 6899999998 5777787754 7789999999999 899999975 33221 12223468998875 988766
Q ss_pred C-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 259 P-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 259 ~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
. .+|.+++++++.+. +..... .........++.+ +.....+..+.++.+.+ +.+.++++++.+++.+.
T Consensus 299 ~~Pi~av~~~~ei~~~-~~~~~~---~~~~~~~~~T~~g--npl~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l~~~ 367 (460)
T PRK06916 299 YLPIAITVTTDEIYNA-FYGDYE---EQKTFFHGHSYTG--NPLGCAVALANLELYEK-----TNLIEQVARKTEYVATQ 367 (460)
T ss_pred ccccceeeecHHHHHH-hhcccc---ccCccccCCCCCC--CHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHH
Confidence 3 58888898887764 110000 0000000111112 22233334445555543 34678889999999999
Q ss_pred HHHHcCCCcCCCcccccceEEEEcCCccccCC----hhh-HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 338 LANAWGTSLGSPPEICAAMVMVGLPSRLRVMG----EDD-ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 338 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
|.++.....+......+.++.+.+.+....++ ... ...+...+.++ ||.+.. .
T Consensus 368 l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~---------------------~ 425 (460)
T PRK06916 368 LEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSREL-GMLTRP---------------------L 425 (460)
T ss_pred HHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHC-CeEEEe---------------------c
Confidence 98764332222233345555555531100000 111 34677777664 999842 1
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++.+|+.++...|++||+.+++++++.++.
T Consensus 426 g~~l~~~Ppl~it~~~id~~~~~l~~~l~~ 455 (460)
T PRK06916 426 GNTIVFMPPLASTIDELDEMLRILYKAISD 455 (460)
T ss_pred CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 258999999889999999999999999864
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-15 Score=147.76 Aligned_cols=353 Identities=11% Similarity=0.085 Sum_probs=209.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCC----CCCCcEEEecChhHHHHHHHHHhhccc
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINA----DDVGEISLVDNATTAAAIVLQQIGRGF 122 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~i~~t~g~t~a~~~~~~~l~~~~ 122 (452)
..|...+.+.+++.+.+.... ..... .-..+...++-+++++++.. ++.+.++|+++||+|++.++. ++|.|
T Consensus 77 ~lGh~~p~i~~Ai~~q~~~l~-~~~~~--~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlK-lAr~~ 152 (472)
T PRK08742 77 LFGHAEPRIGAAIAAQAGELE-QVMLA--GFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALK-MAFHY 152 (472)
T ss_pred cCCCCCHHHHHHHHHHHHhCC-Ccccc--ccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHH-HHHHH
Confidence 456777889999988876431 11111 11234456778888887743 123689999999999999998 45554
Q ss_pred ccCCCCC-CCEEEEeCCcchhHHHHHHHHHHhc------C---cEEEEEeCCCC----CC-C--h--HHHHHHHHHHHhc
Q 012991 123 TEGRFHR-NDTVLMLHCAFQAVKKSIQAYVTRA------G---GSVVEVQLPFP----LA-S--E--EEIINEFKKGIEK 183 (452)
Q Consensus 123 ~~~~~~~-g~~Vl~~~~~~~s~~~~~~~~a~~~------g---~~v~~~~~~~~----~~-~--~--~~~~~~l~~~i~~ 183 (452)
....-.+ +.+|+....+|++.......+.... + ..+..++.+.. .. . + ....+.+++.++.
T Consensus 153 ~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (472)
T PRK08742 153 FHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ 232 (472)
T ss_pred HHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh
Confidence 2111112 4689988888888653332211000 0 01222322110 00 0 0 1125777777753
Q ss_pred cccCCCceEEEEEec-cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcc
Q 012991 184 GKKDGKMIRLAIIDH-ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHK 253 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K 253 (452)
. .+++.+|+++. .....|.+.| ++++.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |
T Consensus 233 ~---~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gi-llI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~g--K 306 (472)
T PRK08742 233 S---PGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGA-FLIADEIATGFGRTGTLFACEQAGVMPDLLCLS--K 306 (472)
T ss_pred C---CCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCCCccchHHHhcCCCCCEEEEc--c
Confidence 2 46789999997 4666787655 7789999999999 999999975 44332 22233468999996 9
Q ss_pred cCcCCC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 254 WFFCPP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 254 ~l~g~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
.+.|+. .+|.+++++++.+. + .... .........++.| +..+..+..++++.+.+ +.+.++.+++.+
T Consensus 307 gl~gG~~Plaav~~~~ei~~~-~-~~~~---~~~~~~h~~T~~g--npl~~Aaa~a~L~~i~~-----~~l~~~~~~~g~ 374 (472)
T PRK08742 307 GLTGGFLPLSAVLATQQLYDA-F-LDDS---RERAFLHSHSYTG--NPLACAAALATLDIFAD-----DDVIARNQPTAA 374 (472)
T ss_pred cccCCCCCcceeeccHHHHHH-h-hccC---ccCccCcCCCCCc--cHHHHHHHHHHHHHHHH-----CCHHHHHHHHHH
Confidence 887663 58888888887664 1 1100 0000000111112 22233344445555553 345677777777
Q ss_pred HHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCCh----hh-HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE----DD-ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
++.+.+..+.....+......+.++.+.+......... .. ...+.+.+.++ ||.+..
T Consensus 375 ~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~----------------- 436 (472)
T PRK08742 375 RMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALAR-GVVLRP----------------- 436 (472)
T ss_pred HHHHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHC-CeEEEe-----------------
Confidence 77766655433333333334466666666311000000 11 24567777665 999852
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.++.||+.++...|++||+.++++|++.+++.
T Consensus 437 ----~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 437 ----LGDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred ----cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 12589999999999999999999999998764
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-15 Score=147.57 Aligned_cols=339 Identities=13% Similarity=0.127 Sum_probs=194.6
Q ss_pred CCCCCcHHHH--HHHHHHHHHHhc-CCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccc
Q 012991 47 SFGSCPKSVL--ADQQKWQLKFLQ-QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 47 ~~~~~p~~v~--e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~ 123 (452)
..|...+.|. +++.+.+..... .+... ....+...++.++++++.+.++.+.++|++|||+|++.++. ++|+|+
T Consensus 51 ~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~Alk-lAr~~t 127 (431)
T TIGR03251 51 ALGMNHPALVDDLAFRARLGAAAVNKPSNS--DVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALK-TAFDWK 127 (431)
T ss_pred CCCCCChhhhHHHHHHHHHHHhhhcccccC--CCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHH-HHHHHh
Confidence 3466667788 888887765421 11111 11233345566667776533234689999999999999998 556553
Q ss_pred cC----CCC---CCCEEEEeCCcchhHHHHHHHHHHhcCcEEE--------EEeCC---CCCC----C---h--HHHHHH
Q 012991 124 EG----RFH---RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV--------EVQLP---FPLA----S---E--EEIINE 176 (452)
Q Consensus 124 ~~----~~~---~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~--------~~~~~---~~~~----~---~--~~~~~~ 176 (452)
.. .-+ .+.+|+....+|++.......+.......-. .++.+ .+.. + . ...+++
T Consensus 128 ~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 207 (431)
T TIGR03251 128 SRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQ 207 (431)
T ss_pred hcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHH
Confidence 11 001 1468999998888865443322111000000 01110 0100 0 0 111556
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEE
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFY 247 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~ 247 (452)
+++.++.. .+++.+|+++......|.+.+ +++|.++|++||+ ++|+|++++ +|... .+.....+|++
T Consensus 208 ~~~~~~~~---~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEV~tG~GrtG~~~a~~~~gv~PDi~ 283 (431)
T TIGR03251 208 ARAAFAER---PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDA-LLIFDEVQTGVGLTGTAWAYQQLGVQPDIV 283 (431)
T ss_pred HHHHHHhC---CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecchhccCccchHHHHHhcCCCCCEE
Confidence 66677532 468999999999888898753 7899999999999 999999987 54431 22333468999
Q ss_pred EEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 248 VSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 248 ~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
+++ |.+ |. .|++. .+++.+. ....+ ........++ +.+.....+..++++.+.+ +.+.+++
T Consensus 284 ~~g--K~~--~~-~g~~~-~~~i~~~--~~~~~----~~~~~~~~T~--~gnpl~~aaa~a~L~~l~~-----~~l~~~~ 344 (431)
T TIGR03251 284 AFG--KKT--QV-CGIMA-GRRVDEV--ADNVF----AVPSRLNSTW--GGNLVDMVRATRILEIIEE-----ERLVDNA 344 (431)
T ss_pred Eec--ccC--cc-ceEEe-cchHHHh--hhhcc----cCccccCCCC--CCCHHHHHHHHHHHHHHHh-----cCHHHHH
Confidence 875 764 33 35553 3332111 00000 0000011111 1222344445556666654 2345566
Q ss_pred HHHHHHHHHHHHHHc-CCC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAW-GTS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGA 405 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~ 405 (452)
+++.+++.+.|.++. ... +.......+.++.+.++ +......+.+.|.+ .||.+..
T Consensus 345 ~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~------~~~~~~~~~~~l~~-~Gvl~~~--------------- 402 (431)
T TIGR03251 345 RVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLP------STADRDEVIRQLYR-EGVLLLG--------------- 402 (431)
T ss_pred HHHHHHHHHHHHHHHHhCccceecccccceeEEEEeC------CHHHHHHHHHHHHh-CCeEEec---------------
Confidence 677777777776541 122 22222233667677775 22234578888876 4999842
Q ss_pred CCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 406 RDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 406 ~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
...+.+|++++..+|++||++++++|.+
T Consensus 403 -----~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 403 -----CGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred -----CCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 1125799999999999999999999975
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-15 Score=146.01 Aligned_cols=358 Identities=11% Similarity=0.102 Sum_probs=209.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.|.+++.+.+..... ........+...++.++|++.+... .+.++|+++||+|++.++.. +|++....
T Consensus 44 ~lGh~hp~v~~Ai~~ql~~~~~---~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~Alkl-Ar~~~~~r 118 (447)
T PRK06917 44 GIGHGVKEIADAIKEQAEEVSF---VYRSQFTSEPAEKLAKKLSDLSPGD-LNWSFFVNSGSEANETAMKI-AIQHFQER 118 (447)
T ss_pred cCCCCCHHHHHHHHHHHhhCcC---ccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCChHHHHHHHHHH-HHHHHHhc
Confidence 3567778899999998875311 1001112455677888888887542 36889999999999999984 44432111
Q ss_pred C-CCCCEEEEeCCcchhHHHHHHHHHHhcCc---------EEEEEeCCC----CCCCh-----HHHHHHHHHHHhccccC
Q 012991 127 F-HRNDTVLMLHCAFQAVKKSIQAYVTRAGG---------SVVEVQLPF----PLASE-----EEIINEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~---------~v~~~~~~~----~~~~~-----~~~~~~l~~~i~~~~~~ 187 (452)
- ..+.+|+.....|++.......+...... .+..++.+. +.++. ....+.+++.+++..
T Consensus 119 g~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~-- 196 (447)
T PRK06917 119 GIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIG-- 196 (447)
T ss_pred CCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcC--
Confidence 1 23468888888888865444322111000 112222110 11111 111467777775321
Q ss_pred CCceEEEEEeccCCC-Cccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcC
Q 012991 188 GKMIRLAIIDHITSM-PCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~-tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
.+++.+|+++..... -|.+.| +++|.++|++||+ ++|+|+++. +|-.. .......+|+++++ |.+.|
T Consensus 197 ~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~-llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~g--K~l~~ 273 (447)
T PRK06917 197 AEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDI-LFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLG--KGLGA 273 (447)
T ss_pred CCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCC-EEEEechhhCcCcccchhhHHhcCCCCCEEEee--ehhcc
Confidence 247899999987653 346554 6789999999999 899999976 33221 12223358988775 98876
Q ss_pred CC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 PP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+. .+|.+.+++++.+. + .+.. + ......+ ...+.....+..+.++.+.+ +.+.++++++.++|.+
T Consensus 274 G~~Pi~a~~~~~~i~~~-~-~~~~----~-~~~~~~T--~~gnpl~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l~~ 339 (447)
T PRK06917 274 GYTPIAATVVSDRVMEP-I-LRGS----R-SIMSGHT--LSANPLSAATALAVLEYMEK-----HNLPEKAAEKGEYLIK 339 (447)
T ss_pred CCcceEEEEEcHHHHHH-H-hccC----c-ccccccC--CCCCHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHH
Confidence 53 47888888877664 1 1100 0 0000001 11222233334445555543 3467788899999999
Q ss_pred HHHHHcC-CCcCCCcccccceEEEEcCCccccC-----ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 337 MLANAWG-TSLGSPPEICAAMVMVGLPSRLRVM-----GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 337 ~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
.|.++.. ..++......+.++.+.+-.....+ +..-...+...+.++ ||.+...... .. +
T Consensus 340 ~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~~-~~------------g 405 (447)
T PRK06917 340 GLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKN-GLLLYPAVAG-QD------------G 405 (447)
T ss_pred HHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhC-CcEEEecccc-cC------------C
Confidence 9887632 2333333334556656552100000 011245677777664 9998532110 00 1
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++.+|+++....|++||+.+++++.+.+++
T Consensus 406 ~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 437 (447)
T PRK06917 406 KEGDAVIIAPPMTITYSELDELLSIFAKSVEE 437 (447)
T ss_pred CCCCEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 23478999999888999999999999998864
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-15 Score=150.17 Aligned_cols=343 Identities=15% Similarity=0.137 Sum_probs=204.6
Q ss_pred CCCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.++.++.+..+ ..|..++.+.+++.+.+... . . .+...+...++.+++++++.- .+.++|++||++|+
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~---~-~--~~~~~~~~~~la~~L~~~~~~--~~~v~~~~sGseA~ 119 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKG---L-S--FGAPTELEVELAELVIELVPS--IEMVRMVNSGTEAT 119 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhC---C-c--CCCCCHHHHHHHHHHHHhCCC--CCEEEEecCHHHHH
Confidence 34555555443 24577888999999888652 1 1 122345567888888888742 36899999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh----cC------cE--E--EEEeCCCCCCChHHHHHHH
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR----AG------GS--V--VEVQLPFPLASEEEIINEF 177 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~----~g------~~--v--~~~~~~~~~~~~~~~~~~l 177 (452)
..++.... . ...+++|+..++.|++........+.. .+ .. + ..+.. +..+ .+.+
T Consensus 120 e~Aik~a~-~-----~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d----~~~l 187 (426)
T PRK00062 120 MSAIRLAR-G-----YTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTA--PYND----LEAV 187 (426)
T ss_pred HHHHHHHH-H-----HhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEc--CCCC----HHHH
Confidence 99998642 2 234678999999998864333221000 00 00 0 01111 1111 5777
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCcc----ccccccCccEEEE
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKEIGADFYVS 249 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~~~~d~~~~ 249 (452)
++.+++. .+++++|+++....++|.+.| +++|.++|++||+ ++|+|++|+..-.. .+.....+|++
T Consensus 188 ~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~G~r~g~~~~~~~~~~~pDi~-- 261 (426)
T PRK00062 188 EELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGA-LLIFDEVMTGFRVALGGAQGYYGVTPDLT-- 261 (426)
T ss_pred HHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeechhccccCCccHHHHhCCCcchH--
Confidence 7777532 357889999988888999988 8999999999999 89999998622111 11112246764
Q ss_pred cCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 250 NLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 250 s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
+++|.+.++..+|++++++++.+. +. +. +. .... .+...+.....+..++++.+.+ +.+.++.++
T Consensus 262 ~~gK~l~~G~p~ga~~~~~~i~~~-~~-~~-----~~--~~~~-~T~~~~p~~~aaa~a~L~~~~~-----~~~~~~~~~ 326 (426)
T PRK00062 262 TLGKIIGGGLPVGAFGGRREIMEQ-LA-PL-----GP--VYQA-GTLSGNPLAMAAGLATLKLLKE-----PGFYEELEA 326 (426)
T ss_pred hhhhHhhCCCcceeeeEHHHHHHh-hc-cC-----CC--ceec-ccCcCCHHHHHHHHHHHHHHhc-----chHHHHHHH
Confidence 556987654336888888877765 21 10 00 0000 0111222333444445555543 246777788
Q ss_pred HHHHHHHHHHHHc-CCCcCCCcccccceEEEEcCCccc-------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 330 QALKMARMLANAW-GTSLGSPPEICAAMVMVGLPSRLR-------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 330 ~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
+.+++++.|.++. ...+.......+.++.+.+..... ..+......+.+.|.++ ||.+....
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-Gv~v~~~~--------- 396 (426)
T PRK00062 327 LTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDE-GVYLAPSQ--------- 396 (426)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHC-CeEeecCC---------
Confidence 8888888876541 111111111235566555531100 00111235788888765 99985321
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.+++++ .+|++||++++++|++++..
T Consensus 397 -----------~~~~~~~~--~~t~~ei~~~~~~l~~~l~~ 424 (426)
T PRK00062 397 -----------FEAGFVSA--AHTDEDIEKTLEAARKAFAA 424 (426)
T ss_pred -----------cCceeeec--cCCHHHHHHHHHHHHHHHHh
Confidence 13456654 45999999999999998853
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-15 Score=146.57 Aligned_cols=352 Identities=12% Similarity=0.112 Sum_probs=211.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... .... .....+...++.+++++++..+ .+.+.|+++||+|++.++. ++|.|....
T Consensus 60 ~lGh~~p~v~~Ai~~ql~~l~-~~~~--~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlK-lAr~~~~~~ 134 (466)
T PRK07030 60 VFGHANPRINQRIKDQVDQLE-HVIL--AGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALK-MSFHYWRNR 134 (466)
T ss_pred cCCCCCHHHHHHHHHHHHhcC-Cccc--cccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHH-HHHHHHHHh
Confidence 356777889999998886531 1111 0112455677888888877532 4699999999999999998 444442111
Q ss_pred C-CCCCEEEEeCCcchhHHHHHHHHHHhc------C---cEEEEEeCCCC----CC---ChH--HHHHHHHHHHhccccC
Q 012991 127 F-HRNDTVLMLHCAFQAVKKSIQAYVTRA------G---GSVVEVQLPFP----LA---SEE--EIINEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~-~~g~~Vl~~~~~~~s~~~~~~~~a~~~------g---~~v~~~~~~~~----~~---~~~--~~~~~l~~~i~~~~~~ 187 (452)
- ..+.+|+....+||+.......+.... + ..+..++.+.. .. ... ..++.+++.+++.
T Consensus 135 g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~--- 211 (466)
T PRK07030 135 GKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEH--- 211 (466)
T ss_pred CCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhC---
Confidence 1 224678888888888653332211100 0 01222322110 00 001 1156778877532
Q ss_pred CCceEEEEEec-cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcC
Q 012991 188 GKMIRLAIIDH-ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 188 ~~~~~lv~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
.+++.+|+++. +....|.+.+ +++|.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.+.|
T Consensus 212 ~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~-llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~g 288 (466)
T PRK07030 212 HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGV-HLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLS--KALTG 288 (466)
T ss_pred CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCC-EEEEeehhhCcCccccchHHHhcCCCCCEEeee--hhccC
Confidence 46899999997 4666788765 7789999999999 999999975 44321 12333468999996 98877
Q ss_pred CC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 PP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+. .+|.+++++++.+. +.... . .........++.+ +..+..+..+.++.+.+ +.+.++.+++.+++.+
T Consensus 289 G~~Pi~av~~~~ei~~~-~~~~~-~--~~~~~~h~~T~~g--npla~aaa~a~L~~i~~-----~~l~~~~~~~G~~l~~ 357 (466)
T PRK07030 289 GYLPLAAVLTTDTVYQA-FYDDY-P--TLRAFLHSHSYTG--NPLACAAALATLDIFEQ-----DNVIENNRALARRMAE 357 (466)
T ss_pred CcccceEEEecHHHHHH-Hhccc-c--cccccccCCCCCC--CHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH
Confidence 63 58888898888764 11000 0 0000001111112 22233334445555553 4467888899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCcccc----CCh-hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRV----MGE-DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
.|.++.....+......+.++.+.+...... ... .....+.+.+.++ |+.+..
T Consensus 358 ~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~--------------------- 415 (466)
T PRK07030 358 ATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALER-GALLRP--------------------- 415 (466)
T ss_pred HHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHC-CeEEEe---------------------
Confidence 9987633222222233456666655310000 000 1124677777664 998842
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++.+|+.++...|++||+.+++++.+.+++
T Consensus 416 ~g~~i~~~Ppl~it~~eid~~~~~l~~al~~ 446 (466)
T PRK07030 416 LGSVVYFLPPYVITPEQIDFLAEVASEGIDI 446 (466)
T ss_pred cCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 1257999999888999999999999999875
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.3e-15 Score=145.36 Aligned_cols=335 Identities=13% Similarity=0.103 Sum_probs=192.3
Q ss_pred CCCCcHHHHHHHHHH-HHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 48 FGSCPKSVLADQQKW-QLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
.|..++.+.+++.+. .................++.+.+.+.+++++.. +.+.++|++||++|++.++. ++++|....
T Consensus 72 lGh~~p~i~~Ai~~q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~-~~~~v~f~~SGsEAvE~AlK-lAr~~~~~~ 149 (464)
T TIGR00699 72 IGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPK-GQDQVWTGMSGSDANELAFK-AAFMYYRSK 149 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCC-CcCEEEEeCCcHHHHHHHHH-HHHHHHHhc
Confidence 367778899999874 222111111111111122333333334555543 24689999999999999998 444442100
Q ss_pred ---C----------------CC---CCEEEEeCCcchhHHHHHHHHHHhc-----C---cEEEEEeCCC---CC----C-
Q 012991 127 ---F----------------HR---NDTVLMLHCAFQAVKKSIQAYVTRA-----G---GSVVEVQLPF---PL----A- 168 (452)
Q Consensus 127 ---~----------------~~---g~~Vl~~~~~~~s~~~~~~~~a~~~-----g---~~v~~~~~~~---~~----~- 168 (452)
. .+ ..+||....+||+.......+.... + ..+..++.+. +. .
T Consensus 150 ~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~ 229 (464)
T TIGR00699 150 QRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKE 229 (464)
T ss_pred CCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCccccccccccc
Confidence 0 01 2379999999888655443221100 1 0111222110 00 0
Q ss_pred -Ch--HHHHHHHHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----
Q 012991 169 -SE--EEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK---- 236 (452)
Q Consensus 169 -~~--~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~---- 236 (452)
.. ...++.+++.+++. ..++.+|+++......|.+.| +++|.++|++||+ ++|+|+++. +|-..
T Consensus 230 ~~~~~~~~l~~l~~~l~~~---~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~-lLI~DEV~tGfGrtG~~fa 305 (464)
T TIGR00699 230 NAKEEQRCLEEVEDLIKKW---HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNV-AFIVDEVQTGVGATGKFWA 305 (464)
T ss_pred chhHHHHHHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeeeeeCCCCCcchhH
Confidence 01 12267788888532 457999999999988899987 8999999999999 899999974 33321
Q ss_pred cccccc--CccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH
Q 012991 237 IDVKEI--GADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314 (452)
Q Consensus 237 ~~~~~~--~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 314 (452)
.+.... .+|+++++ |.+.+. |+++.+ +.+.. ..+.. ... +...+..+..+..++++.+.
T Consensus 306 ~e~~gv~~~PDi~t~g--K~lg~g---G~~~~~-~~~~~--~~~~~---------~~~--T~~gnp~~~aaa~a~L~~l~ 366 (464)
T TIGR00699 306 HEHWNLDDPPDMVTFS--KKFQTA---GYFFHD-PAFRP--NKPYR---------QFN--TWMGDPSRALILREIIQEIK 366 (464)
T ss_pred HHhcCCCCCCCEEEeh--hhhccC---Cccccc-hhccC--CCCcc---------ccc--CCCCCHHHHHHHHHHHHHHH
Confidence 111122 38997775 976321 232222 22211 01100 000 11122223333344555555
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHc-CCC-cCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee
Q 012991 315 RFEGGIDGIMQRNHEQALKMARMLANAW-GTS-LGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI 390 (452)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~ 390 (452)
+ +.+.++.+++.+++.+.|.++. ... ++.... ..+.++.+.++ +......+.+.+.++ |+.+..
T Consensus 367 ~-----~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~------~~~~~~~i~~~~~~~-Gvl~~~ 434 (464)
T TIGR00699 367 R-----KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTP------DEAKRDKLLKKARNN-GVNIGG 434 (464)
T ss_pred h-----cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecC------CHHHHHHHHHHHHHC-CcEEec
Confidence 3 3467777888888888887752 122 222211 34677777775 222356788888775 999852
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 391 HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
...+.||+.++...|++||+.++++|.+.
T Consensus 435 --------------------~g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 435 --------------------CGVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred --------------------CCCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 11368999999999999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-14 Score=143.75 Aligned_cols=346 Identities=12% Similarity=0.089 Sum_probs=206.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC--CCcEEEe-cChhHHHHHHHHHhhcccc
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD--VGEISLV-DNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~i~~t-~g~t~a~~~~~~~l~~~~~ 123 (452)
..|..++.|.+++.+.+......... .-..+...++.+++.+++..+- .+.++|+ ++|++|++.++.. +|.+
T Consensus 76 ~lGh~~p~v~~Ai~~ql~~~~~~~~~---~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~Alkl-Ar~~- 150 (464)
T PRK06938 76 ALGHNHPVVIEAIQQVLADELPLHTL---DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKL-VKTA- 150 (464)
T ss_pred ccCCCCHHHHHHHHHHHHhhhccccc---ccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHH-HHHh-
Confidence 35677888999999887542111110 1123444556677777664320 1357675 7999999999984 4433
Q ss_pred cCCCCCCCEEEEeCCcchhHHHHHHHHHHhc------C---cEEEEEeCCCCC----C---Ch-H-HHHHHHHHHHhccc
Q 012991 124 EGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA------G---GSVVEVQLPFPL----A---SE-E-EIINEFKKGIEKGK 185 (452)
Q Consensus 124 ~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~------g---~~v~~~~~~~~~----~---~~-~-~~~~~l~~~i~~~~ 185 (452)
..+.+|+....+||+.......+.... + ..+..++.++.. . +. . ...+.+++.+++..
T Consensus 151 ----tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 226 (464)
T PRK06938 151 ----TGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPE 226 (464)
T ss_pred ----hCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhc
Confidence 345689988888888654443221100 0 123344332110 0 00 1 12677888885321
Q ss_pred cCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCc
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~ 256 (452)
...+++.+|+++......|.+.| ++++.++|++||+ ++|.|+++. +|-.. .+.....+|+++++ |.+.
T Consensus 227 ~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~gi-LlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~g--Kglg 303 (464)
T PRK06938 227 SGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGI-PLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLS--KAIG 303 (464)
T ss_pred cCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCcHHHHHHhcCCCCCEEEee--cccc
Confidence 11246899999988877788765 7799999999999 999999975 43221 12223468999997 9887
Q ss_pred CCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 257 CPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 257 g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
|+..+|.++.++++ +. + .+.. ...++.| +..+..+..+.++.+.+ +++.++.+++.++|.+
T Consensus 304 gG~PlsAv~~~~~~-~~-~-~~~~---------~~~T~~g--npla~Aaa~a~L~~l~~-----~~l~~~~~~~G~~l~~ 364 (464)
T PRK06938 304 GSLPLAVVVYREWL-DT-W-QPGA---------HAGTFRG--NQMAMAAGSATLRYIKE-----HRLAEHAAAMGERLRE 364 (464)
T ss_pred CCCceEEEeehhHh-hc-c-CCCC---------CCCCCCc--CHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHH
Confidence 76668888887764 43 1 1110 0111112 22223333344454443 4567888888999999
Q ss_pred HHHHHc-CCCcCCCcccccceEEEEcCCccccC--------ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 337 MLANAW-GTSLGSPPEICAAMVMVGLPSRLRVM--------GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 337 ~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
.|.++. ...++......+.++.+.+....... +..-...+...+.+ .|+.+....
T Consensus 365 ~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~g--------------- 428 (464)
T PRK06938 365 HLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLR-RGLILELGG--------------- 428 (464)
T ss_pred HHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHH-CCeEEeecC---------------
Confidence 988763 23333333344666666653110000 01113457777766 499885311
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+.+|+.++...|++||+.+++++.+.+..
T Consensus 429 ---~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 429 ---RHGSVVRFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred ---CCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 12368999999889999999999999998864
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-15 Score=161.70 Aligned_cols=345 Identities=12% Similarity=0.157 Sum_probs=215.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.|.+++.+.+.....+. ....+...++.++|++.+..+ .+.+.|++|||+|++.++. ++|.+
T Consensus 635 ~lGH~hp~v~~Ai~~q~~~l~~~~-----~~~~~~~~~lAe~L~~~~p~~-~~~v~f~nSGsEA~e~Alk-lAr~~---- 703 (1013)
T PRK06148 635 HVGHAHPRVVAAAARQAARLNTNT-----RYLHDAIVAYAERLTATLPDG-LTVAFFVNSGSEANSLALR-LARAH---- 703 (1013)
T ss_pred hcCCCCHHHHHHHHHHHhhcCCcC-----CcCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHH-HHHHh----
Confidence 466778889999999887642211 112455677888888887543 4688999999999999998 45544
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHH----h-cC----cEEEEEeCC----CCCC--Ch--H-HHHHHHHHHHhccccCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVT----R-AG----GSVVEVQLP----FPLA--SE--E-EIINEFKKGIEKGKKDG 188 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~----~-~g----~~v~~~~~~----~~~~--~~--~-~~~~~l~~~i~~~~~~~ 188 (452)
..+.+|++...+|++.......+.. . .+ ..+..++.+ .+.. +. . ...+.+++.++......
T Consensus 704 -tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 782 (1013)
T PRK06148 704 -TGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKG 782 (1013)
T ss_pred -cCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccC
Confidence 3456889888888876533211100 0 01 112222211 0111 11 1 11455666664322224
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc-----ccccccCccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK-----IDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~-----~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
+++++|+++......|.+.+ ++++.++|++||+ ++|+|+++. +|-.. .......+|+++++ |.++|+
T Consensus 783 ~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~-llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~g--K~lggG 859 (1013)
T PRK06148 783 RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGG-VCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMG--KPIGNG 859 (1013)
T ss_pred CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCC-EEEEEecccCCCCCCCcchhhhhcCCCcceeeec--ccccCC
Confidence 67999999998888888876 8899999999999 999999984 44332 12223468998886 998877
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|.+++++++.+. + .+ +. ....++.| +..+..+..+.++.+.+ +.+.++.+++.++|.+.|
T Consensus 860 ~Plgav~~~~ei~~~-~-~~------g~--~~~~Tf~g--npla~aaa~a~L~~i~~-----e~l~~~~~~~G~~l~~~L 922 (1013)
T PRK06148 860 HPMGAVVTTREIADS-F-DN------GM--EYFNTFGG--NPVSCAIGLAVLDIIED-----EDLQRNALEIGNYLLAGL 922 (1013)
T ss_pred cceEEEEEcHHHHhh-c-cC------CC--ccccCCCC--CHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHH
Confidence 668999999888765 2 11 00 00011112 22223333344555543 456788889999999999
Q ss_pred HHHcC-CCcCCCcccccceEEEEcCCc--cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 339 ANAWG-TSLGSPPEICAAMVMVGLPSR--LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 339 ~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
.++.. ..++......+.++.+.+... ....+......+.+.+.++ ||.+... +...+.
T Consensus 923 ~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~------------------g~~~~v 983 (1013)
T PRK06148 923 RELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARER-GILIGTE------------------GPHDNV 983 (1013)
T ss_pred HHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhC-CeEEecc------------------CCCCCE
Confidence 87632 333333334466666665310 0001111245678888764 9998421 122478
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|+.++...|++||+.++++|.+++.+
T Consensus 984 lr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148 984 LKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999864
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-15 Score=145.68 Aligned_cols=358 Identities=10% Similarity=0.080 Sum_probs=209.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+..... .... ....+...++.++|++++... .+.+.|++|||+|++.++. ++|.|....
T Consensus 43 ~lGh~~p~v~~av~~ql~~~~~-~~~~--~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~Alk-lAr~~~~~~ 117 (443)
T PRK07483 43 CLGHSHPRVIAAIHAQIDRLAY-AHTS--FFTTEPAEALADRLVAAAPAG-LEHVYFVSGGSEAVEAALK-LARQYFVEI 117 (443)
T ss_pred ccCCCCHHHHHHHHHHHHhccC-cccc--ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCCcHHHHHHHHH-HHHHHHHhc
Confidence 3567788899999998875310 0110 112344567888888877532 4689999999999999998 455542111
Q ss_pred CCC-CCEEEEeCCcchhHHHHHHHHHHh------cC---cEEEEEeCCCCCCC---------hHH-HHHHHHHHHhcccc
Q 012991 127 FHR-NDTVLMLHCAFQAVKKSIQAYVTR------AG---GSVVEVQLPFPLAS---------EEE-IINEFKKGIEKGKK 186 (452)
Q Consensus 127 ~~~-g~~Vl~~~~~~~s~~~~~~~~a~~------~g---~~v~~~~~~~~~~~---------~~~-~~~~l~~~i~~~~~ 186 (452)
-++ +.+|+....+||+.......+... .+ ..+..++.+++... ... ..+.+++.+.+.
T Consensus 118 g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 195 (443)
T PRK07483 118 GQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILEL-- 195 (443)
T ss_pred CCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--
Confidence 112 357888888888865433221110 00 11122322111110 011 146777766421
Q ss_pred CCCceEEEEEeccCC-CCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCc
Q 012991 187 DGKMIRLAIIDHITS-MPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n-~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~ 256 (452)
..+++.+|+++.... ..|.+.| ++.|.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.+.
T Consensus 196 ~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gi-llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~ 272 (443)
T PRK07483 196 GPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGV-LLILDEVMCGMGRTGTLFACEEDGVAPDLVTIA--KGLG 272 (443)
T ss_pred CCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCC-EEEEecceeCcccCcHHHHHhhcCCCCCeeeeh--hhhc
Confidence 135789999998775 3477665 7899999999999 899999975 43321 12223468999986 9887
Q ss_pred CCC-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 257 CPP-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 257 g~~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
|+. .+|.+++++++.+. + .+.. .......++.+ +..+..+..+.++.+.+ +.+.++.+++.++|.
T Consensus 273 gG~~Pi~av~~~~~i~~~-~-~~~~-----~~~~h~~T~~g--npl~~aaa~a~l~~i~~-----~~l~~~~~~~g~~l~ 338 (443)
T PRK07483 273 AGYQPIGAVLASDRIYDA-I-ADGS-----GFFQHGHTYLG--HATACAAALAVQRVIAE-----DGLLANVRARGEQLR 338 (443)
T ss_pred cCccccEEEEEcHHHHHH-H-hcCC-----CccccCCCCCC--CHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHH
Confidence 764 58888898887664 1 1100 00000011111 22223333344555543 456788888999999
Q ss_pred HHHHHH-cCCCcCCCcccccceEEEEcCCccccCC-----hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 336 RMLANA-WGTSLGSPPEICAAMVMVGLPSRLRVMG-----EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 336 ~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+.|.++ ....++......+.++.+.+.+...... ..-...+.+.+.++ |+.+........
T Consensus 339 ~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~~~~~~------------- 404 (443)
T PRK07483 339 ARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMAR-GLMVYPMGGTID------------- 404 (443)
T ss_pred HHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHC-CcEEEecCcccc-------------
Confidence 998764 2233333333345566665521100000 01235677777664 999853211000
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+..++.+|+.+....|++||+.++++|++.+.+
T Consensus 405 ~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~ 437 (443)
T PRK07483 405 GVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA 437 (443)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 112468999999999999999999999999864
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-15 Score=144.55 Aligned_cols=307 Identities=13% Similarity=0.122 Sum_probs=192.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+......... ...+...++.++++++.+. +.+++++|||+|++.++.... .
T Consensus 37 ~lGh~~p~v~~ai~~ql~~~~~~~~~----~~~~~~~~la~~l~~~~~~---~~v~~~~SGseA~e~Alklar-~----- 103 (364)
T PRK04013 37 VLGHNHPEWVEEMSEQLEKLVVAGPM----FEHEEKEEMLEELSKWVNY---EYVYMGNSGTEAVEAALKFAR-L----- 103 (364)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCccCC----cCCHHHHHHHHHHHhhcCC---CEEEEeCchHHHHHHHHHHHH-H-----
Confidence 45677777999999988764211111 1245567788889998865 589999999999999999652 2
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh----cCc-----EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR----AGG-----SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~----~g~-----~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
...+++|++.+.+|++.......+... .+. .+..+ +.++ .+.+++.+ .+++++|+++
T Consensus 104 ~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~----~~~d----~~~l~~~i------~~~~aAvivE 169 (364)
T PRK04013 104 YTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHI----PFND----VEAAKEAI------TKETAAVIFE 169 (364)
T ss_pred HhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEe----cCCC----HHHHHHHh------cCCcEEEEEc
Confidence 233479999999888864443211000 011 11222 1111 46778877 4689999999
Q ss_pred ccCCCCcccc-c---HHHHHHHHHHcCCCEEEEeccccc---CCc-cccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 198 HITSMPCVVI-P---VRKLVKICRDEGVDQVFVDAAHAM---GSI-KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 198 ~~~n~tG~~~-~---l~~i~~l~~~~~~~~~ivD~a~~~---g~~-~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
......|... | +++|.++|++||+ ++|.|++++. |.. ..+.....+|+++++ |.+.|+..+|.++.+.+
T Consensus 170 pi~g~gG~~~~~~~yl~~lr~lc~~~gi-llI~DEv~tG~RtG~~~a~~~~gv~PDiv~~g--K~lggG~P~~a~~~~~~ 246 (364)
T PRK04013 170 PIQGEGGIVPAKEEFVKTLRDLTEDVGA-LLIADEVQSGLRTGKFLAIEHYKVEPDIVTMG--KGIGNGVPVSLTLTNFD 246 (364)
T ss_pred CCcCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhhcCCCCchhHHHhcCCCCCEEEec--ccccCCceeEEEEeccc
Confidence 9888777765 4 8899999999999 8999999862 211 112223468988886 98876555777777665
Q ss_pred ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 270 ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
+... .+ ..++ ..+..+..+..+.++.+.+ +.+.++.++. |.++.. ..+..
T Consensus 247 ~~~~----~~-----------~~T~--~gnp~~~aaa~a~l~~i~~-----~~l~~~~~~~-------l~~l~~-~~v~~ 296 (364)
T PRK04013 247 VERG----KH-----------GSTF--GGNPLACKAVAVTLRILRR-----ERLVEKAGEK-------FIEIKG-ERVVT 296 (364)
T ss_pred ccCC----Cc-----------CCCC--CcCHHHHHHHHHHHHHHHh-----ccHHHHHHHH-------HHHhcc-Cccee
Confidence 4211 01 0011 1122233333445555553 2344444432 222211 22223
Q ss_pred cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 350 PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
....+.++.+.+. . ....+.+.+.++ |+.+.. ...+.+|+.++...|++|+
T Consensus 297 vRG~Gl~~gve~~-------~-~~~~i~~~~~~~-Gll~~~--------------------~g~~vlr~~Ppl~it~~~i 347 (364)
T PRK04013 297 TRGRGLMIGIVLK-------K-PVGKYVEELQNR-GYLVHT--------------------AGQRVIRLLPPLIISKDTM 347 (364)
T ss_pred eeeCcEEEEEEeC-------C-cHHHHHHHHHhC-CcEEee--------------------CCCCEEEEeCCcccCHHHH
Confidence 3344666666663 1 245677777664 998842 1136899999998999999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
+.++++|++.+..
T Consensus 348 ~~~~~~l~~~l~~ 360 (364)
T PRK04013 348 EEAKSAIEGVIND 360 (364)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=145.51 Aligned_cols=351 Identities=12% Similarity=0.121 Sum_probs=206.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+....... ..+ ....+...++.++|+++++.+ .+.++|++|||+|++.++.. +|.|....
T Consensus 63 ~lGh~~p~v~~Ai~~q~~~~~~~~-~~~-~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~Alkl-Ar~~~~~~ 138 (456)
T PRK07480 63 NVGYGRKELADAAARQMRELPYYN-TFF-KTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRM-VRHYWALK 138 (456)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcc-ccc-ccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHH-HHHHHHhc
Confidence 356777889999999887531111 110 112455677888888887643 46999999999999999984 45442110
Q ss_pred CCC-CCEEEEeCCcchhHHHHHHHHH------HhcC---cEEEEEeCCCCC------C--ChHHH-HHHHHHHHhccccC
Q 012991 127 FHR-NDTVLMLHCAFQAVKKSIQAYV------TRAG---GSVVEVQLPFPL------A--SEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~~~-g~~Vl~~~~~~~s~~~~~~~~a------~~~g---~~v~~~~~~~~~------~--~~~~~-~~~l~~~i~~~~~~ 187 (452)
-++ +.+|+....+|++.......+. ...+ ..+..++.++.. + +.... .+.+++.+... .
T Consensus 139 g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~ 216 (456)
T PRK07480 139 GKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL--G 216 (456)
T ss_pred CCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc--C
Confidence 112 3578888888887543221110 0001 011222211100 0 01111 46666555321 1
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++.+|+++......|.+.| +++|.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.+.|+
T Consensus 217 ~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~-llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~gG 293 (456)
T PRK07480 217 ADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDI-LLVADEVICGFGRTGEWFGSQHFGIKPDLMTIA--KGLTSG 293 (456)
T ss_pred CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCcCcchhhhhhcCCCCCeeeee--hhhccC
Confidence 357899999998888888876 8899999999999 899999984 54332 22223458988776 988765
Q ss_pred C-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHHH
Q 012991 259 P-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN-HEQALKMAR 336 (452)
Q Consensus 259 ~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~-~~~~~~l~~ 336 (452)
. .+|.+++++++.+. +.... + ......++.| +..+..+..++++.+.+ +.+.++. +++.++|.+
T Consensus 294 ~~Pi~av~~~~~i~~~-~~~~~-----~-~~~~~~T~~g--npl~~Aaa~a~L~~l~~-----~~l~~~~~~~~g~~l~~ 359 (456)
T PRK07480 294 YIPMGAVGVGDRVAEV-LIEEG-----G-EFNHGFTYSG--HPVAAAVALANLRILRD-----EGIVERVRDDTGPYLQK 359 (456)
T ss_pred CccceEEEEcHHHHHH-HhcCC-----C-CcccCCCCCc--CHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 3 47888888887654 10000 0 0001111122 22233334445555543 3456677 477888888
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCCh-----hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE-----DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
.|.++....++......+.++.+.+-+....... .....+.+.+.++ ||.+..
T Consensus 360 ~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~--------------------- 417 (456)
T PRK07480 360 RLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFAN-GLIMRA--------------------- 417 (456)
T ss_pred HHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHC-CcEEee---------------------
Confidence 8877533333333334466666655210000000 1124566677664 998842
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+.+|+++....|++||+.++++|.+.+..
T Consensus 418 ~~~~l~~~Ppl~it~~eid~~~~~l~~al~~ 448 (456)
T PRK07480 418 VGDRMIISPPLVITHAEIDELVEKARKALDA 448 (456)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1257999999888999999999999999865
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-14 Score=145.68 Aligned_cols=355 Identities=10% Similarity=0.045 Sum_probs=209.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|..++.|.+++.+.+.... +... +.....+...++.++|++.+..+ .+.++|++|||+|++.++. ++|.|....-
T Consensus 64 lGh~~p~v~~Av~~q~~~~~-~~~~-~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlK-lAr~~~~~~g 139 (461)
T PRK07482 64 VGYGRTEVAEAIAEQAKELA-YYHT-YVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIK-LVWYYNNVLG 139 (461)
T ss_pred CCCCCHHHHHHHHHHHHhcC-cccc-ccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHH-HHHHHHHhcC
Confidence 46777889999999887631 1111 11112455677888888887542 4689999999999999998 4454421111
Q ss_pred -CCCCEEEEeCCcchhHHHHHHHHHH------hcC---cEEEEEeCCCCCC------Ch---HH-HHHHHHHHHhccccC
Q 012991 128 -HRNDTVLMLHCAFQAVKKSIQAYVT------RAG---GSVVEVQLPFPLA------SE---EE-IINEFKKGIEKGKKD 187 (452)
Q Consensus 128 -~~g~~Vl~~~~~~~s~~~~~~~~a~------~~g---~~v~~~~~~~~~~------~~---~~-~~~~l~~~i~~~~~~ 187 (452)
..+.+|+....+||+.......+.. ..+ ..+..++.+.... .. .. ..+.+++.+.+. .
T Consensus 140 ~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~ 217 (461)
T PRK07482 140 RPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAE--G 217 (461)
T ss_pred CCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--C
Confidence 2246889888888885433211110 011 1122222211000 00 11 257777777421 1
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++.+|+++......|.+.| +++|.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.+.|+
T Consensus 218 ~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~gi-LlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG 294 (461)
T PRK07482 218 PDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDI-LLIADEVVTGFGRLGSMFGSDHYGIEPDLITVA--KGLTSA 294 (461)
T ss_pred CCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCC-EEEEeccccCCCcCcchhhHHhcCCCCCEEEEc--cccccC
Confidence 357899999988887788765 7789999999999 999999975 43321 12223468999986 988776
Q ss_pred C-CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 259 P-SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 259 ~-G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
. .+|.+++++++.+. + .... ...+......++ ..+..+..+..+.++.+.+ +.+.++.+++.+++.+.
T Consensus 295 ~~Pi~av~~~~~i~~~-~-~~~~--~~~~~~~h~~T~--~gnpl~~Aaa~a~L~~~~~-----~~l~~~~~~~g~~l~~~ 363 (461)
T PRK07482 295 YAPLSGSIVGEKVWDV-L-EQGS--DEHGAIGHGWTY--SGHPICAAAALANLDILER-----ENLVGNAAEVGAYFRAR 363 (461)
T ss_pred ccccceeeecHHHHHH-H-hccc--ccCCccccCCCC--CcCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 4 57888888776553 1 1100 000000001111 1222223333344555543 34677788888888888
Q ss_pred HHHHc-CCCcCCCcccccceEEEEcCCccccCCh-----hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 338 LANAW-GTSLGSPPEICAAMVMVGLPSRLRVMGE-----DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 338 L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
|.++. ...++......+.++.+.+.+....... .-...+...+.++ |+.+... .
T Consensus 364 L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~-------------------~ 423 (461)
T PRK07482 364 LRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALER-GVIARAM-------------------P 423 (461)
T ss_pred HHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHC-CcEEecC-------------------C
Confidence 87652 2222222223456666666321000000 0135677788764 9987421 1
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++.+|+.++...|++||+++++++.+.+++
T Consensus 424 ~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 454 (461)
T PRK07482 424 HGDILGFAPPLVLTRAEADEIVAIAKDAVDE 454 (461)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999998888999999999999999865
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=149.28 Aligned_cols=311 Identities=15% Similarity=0.142 Sum_probs=209.2
Q ss_pred hhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE
Q 012991 78 LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS 157 (452)
Q Consensus 78 ~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~ 157 (452)
+.....++++..|+.+|++ ...++++|+|.|+..+++++ +++||.|++++.+|.|+..++.. .|+.
T Consensus 68 p~G~i~eAqe~aA~~fgAd--~tyFvvNGTS~ank~vi~a~--------~~~GD~VLvdRN~HKSi~~glil----aGa~ 133 (557)
T COG1982 68 PEGPIKEAQELAARVFGAD--HTYFVVNGTSTANKAVINAV--------LTPGDKVLVDRNCHKSIHHGLIL----AGAT 133 (557)
T ss_pred CCccHHHHHHHHHHHhCCC--ceEEEECCccHHHHHHHHhh--------cCCCCEEEecCCccHHHHHHHHH----cCCc
Confidence 3456899999999999996 67888999999999999987 69999999999999999888644 5889
Q ss_pred EEEEeCCCCCCC----hHHH-HHHHHHHHhccccCCCce-EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccc
Q 012991 158 VVEVQLPFPLAS----EEEI-INEFKKGIEKGKKDGKMI-RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 158 v~~~~~~~~~~~----~~~~-~~~l~~~i~~~~~~~~~~-~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
++++.+. .+. .+.+ .+.+++++.++ +.- ++++++++++ .|+.+++++|.+.++.+++ ++.+|.+|.
T Consensus 134 Pvyl~p~--~np~~gi~ggI~~~~~~~~l~~~----~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a-~v~~deah~ 205 (557)
T COG1982 134 PVYLEPS--RNPLYGIIGGIPLETFKEALLAH----PDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGA-WVLYDEAHP 205 (557)
T ss_pred eEEecCC--CCccccccCCCCHHHHHHHHHhC----hhhheeEEEecCcc-ceEeecHHHHHHHHhhcCc-eEEhhhcCc
Confidence 9888652 222 2334 78888888653 344 8889988876 7999999999999999999 599999886
Q ss_pred cC-----CccccccccCccEEEEcCcccCcCCCCcEEEEEecC-ccccCCCCCceeccCCCCcccccccccccCcccccc
Q 012991 232 MG-----SIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLV 305 (452)
Q Consensus 232 ~g-----~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (452)
+- ..+....+.++|+++.|.||.+.+......+.++++ .+.. ..++. ......+++|++..+++
T Consensus 206 ~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~----~r~ne------a~~~h~STSPsY~l~AS 275 (557)
T COG1982 206 AHFDFSPMLPESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNH----ERFNE------ALMMHQSTSPSYPLMAS 275 (557)
T ss_pred ccccccccCcchhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCH----HHHHH------HHHHHccCCchHHHHHH
Confidence 52 222222235789999999998877777788888764 2221 11100 01222346788877777
Q ss_pred HHHHHHHHHHhhcCHHHH---HHHHHHHHHHHHHHHHHHcCCCcCCCccc---cc----------------ceEEEEcCC
Q 012991 306 IPSAVTFVSRFEGGIDGI---MQRNHEQALKMARMLANAWGTSLGSPPEI---CA----------------AMVMVGLPS 363 (452)
Q Consensus 306 ~~~al~~~~~~~~g~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~----------------~~~~~~~~~ 363 (452)
+..|-.+... .|...+ .....+.++.+++...++.++.+..++.. .. .=+.+..|
T Consensus 276 lD~Ar~~~~~--~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp- 352 (557)
T COG1982 276 LDVARMQEGN--AGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTP- 352 (557)
T ss_pred HHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecC-
Confidence 7664333332 244332 44556667777777777765655544420 00 01222232
Q ss_pred ccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
..+..+..+.+.|+++ ||...... .....+-+++....+..++++|+++++.+-...
T Consensus 353 ----~~Gipg~~v~~~L~e~-gii~e~~~------------------d~~~lll~~~~~gk~~~lv~~L~~f~r~~d~d~ 409 (557)
T COG1982 353 ----EFGIPGAIVAKYLREH-GIIPEETG------------------DYSNLLLFSPGIGKWQTLVDRLLEFKRRYDDDA 409 (557)
T ss_pred ----CCCCcHHHHHHHHHHc-CCeeeecC------------------CceeeEEeeeccchHHHHHHHHHHHHHhhhccc
Confidence 2477888999999775 88763211 112344455443456777888888888554443
Q ss_pred ccc
Q 012991 444 QVC 446 (452)
Q Consensus 444 ~~~ 446 (452)
...
T Consensus 410 ~l~ 412 (557)
T COG1982 410 PLK 412 (557)
T ss_pred hHh
Confidence 333
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-14 Score=142.52 Aligned_cols=330 Identities=12% Similarity=0.130 Sum_probs=197.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.|.+++.+.+..... . . ...+...++.+++++.+.. .+.+.|+++||+|++.++.. +|.+
T Consensus 66 ~lGh~~p~v~~ai~~q~~~~~~---~--~-~~~~~~~~la~~l~~~~p~--~~~v~f~~sGseA~e~Alkl-Ar~~---- 132 (428)
T PRK12389 66 ITGHAHPHITKAITEAAENGVL---Y--G-TPTELEIEFAKMLKEAIPS--LEKVRFVNSGTEAVMTTIRV-ARAY---- 132 (428)
T ss_pred ccCCCCHHHHHHHHHHHHhCCc---c--C-CCCHHHHHHHHHHHHhCCC--CcEEEEeCCHHHHHHHHHHH-HHHh----
Confidence 3567777799999988764311 1 1 1234457777788777652 46899999999999999984 4443
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhc----------Cc------EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCc
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRA----------GG------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKM 190 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~----------g~------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 190 (452)
..+.+|+.....|++............ +. .+..+ +.++ .+.+++.+++. ..+
T Consensus 133 -tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l~~~---~~~ 200 (428)
T PRK12389 133 -TGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITV----PFND----IEALKEALDKW---GDE 200 (428)
T ss_pred -hCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEc----CCCC----HHHHHHHHHhc---CCc
Confidence 345789988888888654432211100 00 01111 1111 57777777543 357
Q ss_pred eEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCccc----cccccCccEEEEcCcccCcCCCCcE
Q 012991 191 IRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSIKI----DVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~~~----~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
+.+|+++......|.+.| +++|.++|++||+ ++|+|++++..-... ......+|+++++ |.+.|+..+|
T Consensus 201 vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~-llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~g--K~lggG~Pi~ 277 (428)
T PRK12389 201 VAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGA-LVIYDEVITAFRFMYGGAQDLLGVEPDLTALG--KIIGGGLPIG 277 (428)
T ss_pred EEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEEccccccccCcchhhHHhCCCCCeeeec--hhhcCCCcee
Confidence 899999999988999888 8999999999999 899999987431111 1122358987665 9887655578
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
.+++++++.+. + .+. +. .....++ ..+.....+..+.++.+.+ +.+.++.+++.+++.+.|.++.
T Consensus 278 av~~~~~i~~~-~-~~~-----~~-~~~~~T~--~gnpl~~Aaala~L~~l~~-----~~l~~~~~~~g~~l~~~L~~l~ 342 (428)
T PRK12389 278 AYGGRKDIMEQ-V-APL-----GP-AYQAGTM--AGNPASMAAGIACLEVLQQ-----EGVYEKLDRLGAMLEEGILEAA 342 (428)
T ss_pred EEeEHHHHHhh-h-ccC-----CC-cccccCC--ccCHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHH
Confidence 88888887765 2 110 00 0000111 1222233334445555543 3467888999999999988752
Q ss_pred C-CCcCCCcccccceEEEEcCCcccc-------CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 343 G-TSLGSPPEICAAMVMVGLPSRLRV-------MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 343 ~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
. ..+........+++.+.+...... .+......+.+.|.++ ||.+.... .+
T Consensus 343 ~~~~~~~~v~r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~--------------------~~ 401 (428)
T PRK12389 343 EKHGITITINRLKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQ-GINLAPSK--------------------YE 401 (428)
T ss_pred HhCCCCEEEEecCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHC-CcEeecCC--------------------CC
Confidence 1 111111101122333333210000 0011245677788764 99985321 12
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.++ ...|++||+++++++++.+++
T Consensus 402 ~~~~~--l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 402 AWFLT--TAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred Ceeec--CCCCHHHHHHHHHHHHHHHHh
Confidence 23443 445999999999999998853
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-14 Score=140.28 Aligned_cols=345 Identities=13% Similarity=0.076 Sum_probs=203.1
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCC-CcE-EEecChhHHHHHHHHHhhcccccC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDV-GEI-SLVDNATTAAAIVLQQIGRGFTEG 125 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~i-~~t~g~t~a~~~~~~~l~~~~~~~ 125 (452)
.|...+.+.+++.+.+........ .....+...++.+++++.++.... ..+ ++++|||+|++.++. ++|.+
T Consensus 72 lGH~~p~v~~Ai~~q~~~~~~~~~---~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~Alk-lAr~~--- 144 (459)
T PRK06931 72 LGHNHPDVLQSIQDVLTSGLPLHT---LDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIK-LAKTY--- 144 (459)
T ss_pred CCCCCHHHHHHHHHHHhhhccccc---cccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHH-HHHHh---
Confidence 467778899999988764211000 111245566778888888753211 134 555899999999998 44443
Q ss_pred CCCCCCEEEEeCCcchhHHHHHHHHHHhc---------CcEEEEEeCCCC----CC---ChHH--HHHHHHHHHhccccC
Q 012991 126 RFHRNDTVLMLHCAFQAVKKSIQAYVTRA---------GGSVVEVQLPFP----LA---SEEE--IINEFKKGIEKGKKD 187 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~---------g~~v~~~~~~~~----~~---~~~~--~~~~l~~~i~~~~~~ 187 (452)
..+++|+.....|++.......+.... ...+..++.+.. .+ ++.. +.+.+++.+......
T Consensus 145 --tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (459)
T PRK06931 145 --TGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESG 222 (459)
T ss_pred --cCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcC
Confidence 445689999998888765543221110 012333332210 01 0011 123344444321112
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++.+|+++......|.+.| ++++.++|++||+ ++|.|+++. +|-.. .+.....+|+++++ |.+.|+
T Consensus 223 ~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~-LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~g--K~l~gG 299 (459)
T PRK06931 223 VRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGI-LLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMS--KAVGGG 299 (459)
T ss_pred CCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecchhcCCcCchHHHhhhcCCCCCEEEec--ccccCC
Confidence 356899999988888888765 7799999999999 999999975 43221 12223468999986 988776
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|.+..+++. +. + .+.. ...++.| +..+..+..+.++.+.+ +.+.++.+++.++|.+.|
T Consensus 300 ~Pi~av~~~~~~-~~-~-~~~~---------~~~T~~g--npla~aaala~L~~l~~-----~~l~~~~~~~G~~l~~~L 360 (459)
T PRK06931 300 LPLAVLGIKKEF-DA-W-QPGG---------HTGTFRG--NQLAMATGLTTLKILKE-----ENLAQNAAERGEWLKAQL 360 (459)
T ss_pred cceeeeeeHHHH-hh-c-cCCC---------CCCCCCC--CHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 557877776653 32 1 1110 0111112 22223333344555443 346778888888888888
Q ss_pred HHHc-CCCcCCCcccccceEEEEcCCcccc-------C-ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 339 ANAW-GTSLGSPPEICAAMVMVGLPSRLRV-------M-GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
.++. ...++......+.++.+.+.+.... . +..-...+...+.++ |+.+....
T Consensus 361 ~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~----------------- 422 (459)
T PRK06931 361 AELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFEN-GLLLERGG----------------- 422 (459)
T ss_pred HHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHC-CcEEeecC-----------------
Confidence 7762 2233333333466666665311000 0 011134566777664 99884211
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++.+|+.++...|++||+.+++++.+.+..
T Consensus 423 -~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 423 -RNGNVVRLLPPLLITQAECEEFIDRFEQALLA 454 (459)
T ss_pred -CCCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence 12468999999989999999999999998864
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=140.55 Aligned_cols=364 Identities=20% Similarity=0.251 Sum_probs=194.1
Q ss_pred CCccccccCCCC---CCCCCHHHHHhhhccC---CC-CeEEeccCCCC-CCcHHHHHH-HHHHHHHHhc--CCch-hhhh
Q 012991 9 ELTHHVSKKPKL---TRCISEAEIRDEFSHH---QH-GVARINNGSFG-SCPKSVLAD-QQKWQLKFLQ--QPDD-FYFN 76 (452)
Q Consensus 9 ~~~~~~~~~~~~---~~~~~~~~ir~~~~~~---~~-~~~~l~~~~~~-~~p~~v~e~-~~~~~~~~~~--~~~~-~~~~ 76 (452)
+..|..++..++ ...++..++.+++..+ +. ..-++..|... ..|. +.+. +...-. |.+ .|-. -.+.
T Consensus 29 ~~IP~~i~~~~~~~lp~~~sE~e~~r~~~~la~kN~~~~~fiG~G~y~~~~P~-~i~~~i~~~~e-f~TaYtPYQpEisQ 106 (429)
T PF02347_consen 29 SDIPEEIRLKKPLNLPEPLSEYELLRHLERLASKNKSYTSFIGAGSYTHYVPA-VIDRNILSRPE-FYTAYTPYQPEISQ 106 (429)
T ss_dssp TTS-GGG-SS----------HHHHHHHHHHHHTTS--TTS---CTTT-----H-HHHH-HHCCHH-CCCS-STTSGGGBH
T ss_pred hhCCHhhcCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCccccccccCceeCh-hhcCccccChh-hhccCCCCCcHHHH
Confidence 345555543322 2347777777776531 11 23355555555 4444 4444 332221 111 1111 0134
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
+..+.+.+.+..++++.|.+ ..+.-+-.++|++-+.++.++... -+.+++|+++...|+.+...++-++...|+
T Consensus 107 G~Lq~lfe~Qs~i~eLTGmd-vaNaSlyd~atA~aEa~~ma~r~~-----~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~ 180 (429)
T PF02347_consen 107 GRLQALFEYQSMICELTGMD-VANASLYDGATAAAEAMLMAVRAT-----KRKRNKVLVPESLHPQTRAVLRTYAAPLGI 180 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTSS-EE-SEBSSCCHHHHHHHHHHHHHH-----TT---EEEEETTS-CHHHHHHHHHCCHCCE
T ss_pred HHHHHHHHHHHHHHHhhCCC-ccCCCCCChhHHHHHHHHHHHHhc-----ccCCcEEEEcCCcChhhHHHHHHhhhhCCe
Confidence 55667889999999999996 445567778887777776655211 123569999999999988888777788899
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccc--ccCC
Q 012991 157 SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAH--AMGS 234 (452)
Q Consensus 157 ~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~--~~g~ 234 (452)
+++.++.. +.+. .+ ++++..|++++|++ .|.+.++++|.+++|++|. ++++ ++. +++.
T Consensus 181 ~iv~~~~~----~~~~-~d------------~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~ga-l~~~-~ad~~aL~~ 240 (429)
T PF02347_consen 181 EIVEVPLD----EDGT-TD------------DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGA-LVIV-GADPNALGG 240 (429)
T ss_dssp EEEEE-BB----TTCS-B-------------STTEEEEEEESS-T-TSB--THHHHHHHHHHTT--EEEE-CGGCCGCCT
T ss_pred EEEEeccc----ccCC-cc------------ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCC-EEEE-ecCHHHHhC
Confidence 99998542 2110 11 37899999999986 7999999999999999999 7887 664 2333
Q ss_pred ccccccccCccEEEEcCcccCc-----CCCCcEEEEEecCccccCCCCCce-e--cc-CCCC-cc--cc------ccccc
Q 012991 235 IKIDVKEIGADFYVSNLHKWFF-----CPPSVAFLYCRKSILSSDMHHPVV-S--HE-FGNG-LP--IE------SAWIG 296 (452)
Q Consensus 235 ~~~~~~~~~~d~~~~s~~K~l~-----g~~G~G~l~~~~~~~~~~l~~~~~-~--~~-~~~~-~~--~~------~~~~~ 296 (452)
+ .....+|+|+++.+ +|.|+ |++|.|++.+++++..+ ++..+ . .+ .|.. +. .+ +..-.
T Consensus 241 l-~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~--lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKA 316 (429)
T PF02347_consen 241 L-KSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQ--LPGRIVGQTKDADGKRAFVLTLQTREQHIRREKA 316 (429)
T ss_dssp C---GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGG--S-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCS
T ss_pred c-CChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhh--CCCceecccccccccceeeeccccccccccccch
Confidence 2 23456699999665 77663 44558999999998886 33332 1 11 1211 10 00 01223
Q ss_pred ccCccccccH-----HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChh
Q 012991 297 TRDYSAQLVI-----PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGED 371 (452)
Q Consensus 297 ~~~~~~~~~~-----~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (452)
+.++....++ ...+.++.. +|++++.+++..+++|+.+.|.+..+..+..+. .-.++....+ ..
T Consensus 317 tSNIctnqaL~A~~a~~Yl~~~G~--~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~--f~e~v~~~~~-------~~ 385 (429)
T PF02347_consen 317 TSNICTNQALLALAAAIYLAYLGP--EGLREIAERIHLNAHYLAERLKKIYGLPFDNPF--FFEFVVVFSK-------DK 385 (429)
T ss_dssp TT---SS-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSS--BSSEEEEESS--------H
T ss_pred hhhhhhhHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC--ceeeeeecCC-------cH
Confidence 4444322222 223444443 389999999999999999999886344443322 1233333332 12
Q ss_pred hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHH
Q 012991 372 DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 372 ~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
...++.+.... .|+..+ + ...+.+-+|+.-.+|.+|||++++++
T Consensus 386 ~~~~l~~~~~~-~gl~~~--~------------------~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 386 EVEELLKRGIE-GGLNLR--Y------------------PDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp HHHHHHHTT-----EEEG--G------------------G-SSEEEEE--TT--HHHHHHHHH--
T ss_pred HHHHHHHHHHh-cCCCcc--c------------------cCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 33345444433 354432 1 22348999999989999999999874
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-14 Score=142.01 Aligned_cols=343 Identities=14% Similarity=0.119 Sum_probs=198.9
Q ss_pred CCCCCcHHHHH--HHHHHHHHHhc-CCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccc
Q 012991 47 SFGSCPKSVLA--DQQKWQLKFLQ-QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 47 ~~~~~p~~v~e--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~ 123 (452)
..|...+.|.+ ++.+.+..... .+... ....+...++.++|+++.+.++.+.+.|++||++|++.++. ++|+|+
T Consensus 58 ~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~--~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlK-lAr~~~ 134 (443)
T PRK08297 58 ALGMNHPALADDPEFRAELGRAALNKPSNS--DVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALK-VAFDWK 134 (443)
T ss_pred cCCCCChHHhhHHHHHHHHHHhhhhccccC--CcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHH-HHHHHh
Confidence 45677777999 98888765421 11111 11234456677777777632224699999999999999998 455552
Q ss_pred cC----CCC---CCCEEEEeCCcchhHHHHHHHHHHhcC-----cEE---EEEeCCC---CC-C-C---hH----HHHHH
Q 012991 124 EG----RFH---RNDTVLMLHCAFQAVKKSIQAYVTRAG-----GSV---VEVQLPF---PL-A-S---EE----EIINE 176 (452)
Q Consensus 124 ~~----~~~---~g~~Vl~~~~~~~s~~~~~~~~a~~~g-----~~v---~~~~~~~---~~-~-~---~~----~~~~~ 176 (452)
.. .-. .+.+|+....+|++.......+..... ... ..++.+. +. . + .. ..++.
T Consensus 135 ~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (443)
T PRK08297 135 SRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQ 214 (443)
T ss_pred hccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHH
Confidence 10 001 136899999998886544332211000 000 0011110 10 0 0 00 11566
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCccc----cccccCccEE
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIKI----DVKEIGADFY 247 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~~----~~~~~~~d~~ 247 (452)
+++.+.+. .+++.+|+++......|.+.| +++|.++|++||+ ++|+|+++. +|-... +.....+|++
T Consensus 215 ~~~~i~~~---~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~-llI~DEV~tGfGRtG~~~a~~~~gv~PDiv 290 (443)
T PRK08297 215 ARAAFERH---PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDA-LLIFDEVQTGVGLTGTAWAYQQLGVRPDIV 290 (443)
T ss_pred HHHHHHhC---CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhhccCccchHHHHHhcCCCCCEE
Confidence 77777542 468999999988888888754 7899999999999 899999985 444321 1223368999
Q ss_pred EEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 248 VSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 248 ~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
+++ |.+ |. .|++ ..+++.+. ....+. ... ....++ ..+..+..+..++++.+.+ +.+.+++
T Consensus 291 ~~g--K~l--~~-~a~l-~~~~i~~~--~~~~~~---~~~-~~~~T~--~gnpl~~aaa~a~L~~l~~-----~~l~~~~ 351 (443)
T PRK08297 291 AFG--KKT--QV-CGIM-AGRRVDEV--EDNVFA---VSS-RINSTW--GGNLVDMVRARRILEVIEE-----DGLVENA 351 (443)
T ss_pred Eec--ccc--cc-ccee-cchHHHHh--hhhhcc---Ccc-ccCCCC--CccHHHHHHHHHHHHHHHh-----cCHHHHH
Confidence 864 975 32 2444 43332211 000000 000 000111 1122222333334444442 4567788
Q ss_pred HHHHHHHHHHHHHHcC-CCcCC-CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAWG-TSLGS-PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGA 405 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~ 405 (452)
+++.+++.+.|.++.. ..... .....+.++.+.++ +......+.+.|.+ .||.+...
T Consensus 352 ~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~------~~~~~~~~~~~l~~-~Gvl~~~~-------------- 410 (443)
T PRK08297 352 ARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLP------TTADRDEVIRRLWE-EGVLVLPC-------------- 410 (443)
T ss_pred HHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEec------CHHHHHHHHHHHHH-CCEEEecC--------------
Confidence 8888888888877521 22111 22233667777764 22335678888876 49998421
Q ss_pred CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 406 RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 406 ~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+.+|++++...|++|++.++++|.+.+++
T Consensus 411 ------~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~ 441 (443)
T PRK08297 411 ------GERSIRFRPALTVTTEEIDAAIDALRRALPE 441 (443)
T ss_pred ------CCCeEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 1257999998888999999999999998854
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-14 Score=141.54 Aligned_cols=327 Identities=14% Similarity=0.104 Sum_probs=197.1
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.+.+++.+.+..... + ....+...++.+.|++.++. +.+.|++|||+|++.++.. +|.+
T Consensus 89 lGh~~p~i~~Av~~q~~~~~~-----~-~~~~~~~~~lAe~l~~~~~~---~~v~F~nSGtEA~e~Alrl-AR~~----- 153 (453)
T PRK07046 89 FGHSPAPVARALAEQARRGLT-----T-MLPSEDAAWVGEELARRFGL---PYWQVATTATDANRFVLRW-ARAV----- 153 (453)
T ss_pred cCCCCHHHHHHHHHHHHhCCC-----C-CCCCHHHHHHHHHHHHHhCC---CEEEEECCHHHHHHHHHHH-HHHh-----
Confidence 456777799999988764211 1 11245567788888888754 6899999999999999984 4444
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhc----------Cc------EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRA----------GG------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~----------g~------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
..+++|+.....|++....... +... |. .+..+ +.++ ++.+++.+. ..++
T Consensus 154 TGr~~ii~~~g~YHG~~d~~l~-~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~nd----~~~l~~~l~-----~~~v 219 (453)
T PRK07046 154 TGRPKILVFNGCYHGTVDDVFV-DLVDGRPVQRPGLLGQVHDLTATTRVV----EFND----LAALEAALA-----DGDV 219 (453)
T ss_pred hCCCEEEEECCCCCCCcHHhHh-hccCCCCCCCCCCCCCCccccCceEee----CCCC----HHHHHHHhC-----CCCe
Confidence 4467899988888885432221 1001 10 01111 2222 678888774 3578
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc----cCCccccccccCccEEEEcCcccCcCCCCcEE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA----MGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~----~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
.+|+++......|.+.| ++++.++|++||+ ++|+|++++ .|... ......+|+++++ |.+.|+..+|.
T Consensus 220 Aavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~-llI~DEV~tfr~g~Gg~~-~~~gv~PDi~t~g--K~lggG~Pi~a 295 (453)
T PRK07046 220 AAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGT-LLVIDETHTISSGPGGYT-RAHGLEPDFLVVG--KPIAGGVPCAV 295 (453)
T ss_pred EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCC-EEEEEccccCccCCcchh-HHhCCCccceeeh--hhhcCCCccee
Confidence 99999988888888876 7899999999999 999999985 33221 1123458998764 98887666899
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccc--cCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGT--RDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
+.+++++.+. + .+......... ....+| .+.....+..+.++.+.+ +.+.++.+++.++|.+.|.++
T Consensus 296 v~g~~~i~~~-~-~~~~~~~~~~~----~~~~~T~~gnpl~~aa~~a~L~~l~~-----~~~~~~~~~~g~~l~~~L~~l 364 (453)
T PRK07046 296 YGFSAELAER-A-QAAKASAPPGH----SGIGTTLSANALAMAAMRATLAEVMT-----EAAYAHMLALAARLAAGLRAV 364 (453)
T ss_pred eeehHHHHHH-H-hhccccCCCCC----ceeCCCCcccHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHH
Confidence 8898887764 2 11100000000 001122 122223333334444432 345778888888888888764
Q ss_pred c-CCCcCCCcccccceEEEEcCCc--ccc------CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 342 W-GTSLGSPPEICAAMVMVGLPSR--LRV------MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 342 ~-~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
. ...+.......+.++.+.+.+. ... .+..-...+...+.++ ||.+.. .
T Consensus 365 ~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~---------------------~ 422 (453)
T PRK07046 365 IARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNR-GVLITP---------------------F 422 (453)
T ss_pred HHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHC-CCEEec---------------------c
Confidence 2 1222111112233444433110 000 0011123466666564 998742 1
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.+++++. +|++||+.+++++.+.+++
T Consensus 423 ~~~~~~~p~--~t~~did~~~~~~~~~l~~ 450 (453)
T PRK07046 423 HNMMLVCPA--TTAADVDRLVAAFDACLGE 450 (453)
T ss_pred cCcEEEeCC--CCHHHHHHHHHHHHHHHHH
Confidence 246788876 5999999999999998854
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-14 Score=134.88 Aligned_cols=330 Identities=14% Similarity=0.107 Sum_probs=212.0
Q ss_pred hhhhHHHHHHHHHHHhHhCCCC--------CCcEEEecChhHHHHHHHHHhhcc-ccc-----CCCCCC----C-EEEEe
Q 012991 76 NSLRKGILESRAAVKDLINADD--------VGEISLVDNATTAAAIVLQQIGRG-FTE-----GRFHRN----D-TVLML 136 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~--------~~~i~~t~g~t~a~~~~~~~l~~~-~~~-----~~~~~g----~-~Vl~~ 136 (452)
+..+++..-.-+++++++++|+ ...-++..++++++..++.+.... +.+ ..+... + .+..+
T Consensus 109 Pa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~S 188 (511)
T KOG0628|consen 109 PACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCS 188 (511)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEec
Confidence 4456677778899999998762 234466677778888777765322 111 111111 1 34457
Q ss_pred CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHH
Q 012991 137 HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKI 215 (452)
Q Consensus 137 ~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l 215 (452)
+.+|.|+.++. -..|++++.++ .+....+ .+.|+++|+++...+--|.+|+.+-.++.+..+.++.+|..+
T Consensus 189 Dqahssveka~----~i~~VklR~l~----td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~V 260 (511)
T KOG0628|consen 189 DQAHSSVEKAC----LIAGVKLRALP----TDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPV 260 (511)
T ss_pred CcccchHHHhH----hhcceeEEEee----cccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcch
Confidence 88999987653 44688999995 3444444 788888888765546678899999999989999999999999
Q ss_pred HHHcCCCEEEEecccccCCcc---cc--ccc-cCccEEEEcCcccCcCCCCcEEEEEecCcccc-CC--CCCceeccCCC
Q 012991 216 CRDEGVDQVFVDAAHAMGSIK---ID--VKE-IGADFYVSNLHKWFFCPPSVAFLYCRKSILSS-DM--HHPVVSHEFGN 286 (452)
Q Consensus 216 ~~~~~~~~~ivD~a~~~g~~~---~~--~~~-~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~-~l--~~~~~~~~~~~ 286 (452)
|+++|+ ++|||+|++....- +. ++. -.+|.+.+..|||+..=--+..+|+++..... .+ .+-++.+.+..
T Consensus 261 c~~~gl-WLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~ 339 (511)
T KOG0628|consen 261 CREEGL-WLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQG 339 (511)
T ss_pred hhhcCE-EEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhc
Confidence 999999 59999998754321 11 111 13799999999997654446778887763321 00 11112111111
Q ss_pred CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH---HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCC
Q 012991 287 GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH---EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPS 363 (452)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (452)
. ..+......|-...+.++..++.... + |.++++++++ ++++.+.+.+.+-+.+++..+.. -+.++|++..
T Consensus 340 ~-~~Dyrhwqipl~rRfRSLKlWfv~R~-~--Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~--lgLvcFRlk~ 413 (511)
T KOG0628|consen 340 S-APDYRHWQIPLGRRFRSLKLWFVLRS-Y--GVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRI--LGLVCFRLKG 413 (511)
T ss_pred c-CCCccccccccccchhhHHHHHHHHH-H--hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccc--cceeEEeecC
Confidence 1 11222223344445555555444333 2 5555555544 55566666666666788888766 7799999973
Q ss_pred ccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc-ccCCHHHHHHHHHHHHHHHhc
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ-VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l~~~~~~ 442 (452)
++...+.+...+.....|.+.+... .+.-.||++++ ..++.+||+...+.|.+..+.
T Consensus 414 -----~N~~ne~Ll~~in~~g~i~l~~~~l-----------------~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~ 471 (511)
T KOG0628|consen 414 -----DNEINEALLNRLNSSGRIHLVPASL-----------------HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADE 471 (511)
T ss_pred -----CcHHHHHHHHHHHhcCcEEEEEeee-----------------cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence 2334567888888777787754332 33468999986 456788899999999888765
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=134.07 Aligned_cols=344 Identities=14% Similarity=0.124 Sum_probs=207.0
Q ss_pred HHHHhhhccC-CCCeEEeccC------CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCC--
Q 012991 27 AEIRDEFSHH-QHGVARINNG------SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NAD-- 96 (452)
Q Consensus 27 ~~ir~~~~~~-~~~~~~l~~~------~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-- 96 (452)
-.+.+.|... .+..|+|..| +-.+.-++|.++-+...... .. -.|-+-++.....+.+.+++ |.+
T Consensus 14 lgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~----~~-k~Yl~i~G~~~f~~~~~~llFG~d~~ 88 (396)
T COG1448 14 LGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE----KT-KNYLPIEGLPEFLEAVQKLLFGADSP 88 (396)
T ss_pred hHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccc----cc-cccCCcCCcHHHHHHHHHHhcCCCcH
Confidence 3444555432 2334455443 33344455666655544332 11 12334556677777777754 432
Q ss_pred --CCCcE--EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 97 --DVGEI--SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 97 --~~~~i--~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
..+.+ +.|.|||.|+.+++.-+.+ +.+...|.+++|+|+.+...+ +..|.++...+.-+.. ....
T Consensus 89 ~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~------~~~~~~vwis~PtW~NH~~If----~~aGl~v~~Y~Yyd~~-~~~~ 157 (396)
T COG1448 89 ALAEDRVATVQTLGGTGALRVAADFLAR------FFPDATVWISDPTWPNHKAIF----EAAGLEVETYPYYDAE-TKGL 157 (396)
T ss_pred HHHhhhHhheecCCcchHHHHHHHHHHH------hCCCceEEeCCCCcHhHHHHH----HhcCCceeeeeccccc-cccc
Confidence 12233 6789999999999998753 567778999999999876665 4469999999764321 1222
Q ss_pred HHHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEeccc-ccCCccccccc-------
Q 012991 173 IINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAH-AMGSIKIDVKE------- 241 (452)
Q Consensus 173 ~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~-~~g~~~~~~~~------- 241 (452)
..+.+.+.+++. ..+.-+++...++||||.-.. +++|+++.++.+. +.++|-|+ +++.- ++-+.
T Consensus 158 df~~mla~L~~a---~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~l-ip~~D~AYQGF~~G-leeDa~~lR~~a 232 (396)
T COG1448 158 DFDGMLADLKTA---PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGL-IPFFDIAYQGFADG-LEEDAYALRLFA 232 (396)
T ss_pred cHHHHHHHHHhC---CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeeeehhhhhhccc-hHHHHHHHHHHH
Confidence 266666667654 345567788889999999765 5578999999999 89999775 33321 22111
Q ss_pred -cCc-cEEEEcCcccCcCCCC--cEEEEEe-c--CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH---
Q 012991 242 -IGA-DFYVSNLHKWFFCPPS--VAFLYCR-K--SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT--- 311 (452)
Q Consensus 242 -~~~-d~~~~s~~K~l~g~~G--~G~l~~~-~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~--- 311 (452)
.+. -+++.|++|. +|.+| +|++.+- . +.... .....- ..-+...++|+..........|.
T Consensus 233 ~~~~~~lva~S~SKn-fgLYgERVGa~~vva~~~~~a~~-v~sqlk--------~~iR~~ySnPP~~Ga~vva~IL~~p~ 302 (396)
T COG1448 233 EVGPELLVASSFSKN-FGLYGERVGALSVVAEDAEEADR-VLSQLK--------AIIRTNYSNPPAHGAAVVATILNNPE 302 (396)
T ss_pred HhCCcEEEEehhhhh-hhhhhhccceeEEEeCCHHHHHH-HHHHHH--------HHHHhccCCCchhhHHHHHHHhCCHH
Confidence 122 5788899995 88888 6655442 1 22211 000000 00111123344333333222221
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEe
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEV 388 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v 388 (452)
.-..|+..++.+++|+.++++.|.+.|.+.. .+.....+ .+++.+ .+.+.+++ +.|++++||++
T Consensus 303 Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q---~GMFsy---------~Gls~~QV-~rLree~~IY~ 369 (396)
T COG1448 303 LRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQ---RGMFSY---------TGLSPEQV-DRLREEFGIYL 369 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhc---Cceeec---------CCCCHHHH-HHHHHhccEEE
Confidence 1112223578999999999999999998842 13333222 345443 36788777 55567899998
Q ss_pred eecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 389 PIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.. .| |||++.. +...|+.+++++.++
T Consensus 370 v~----------------------sG--Ri~vaGl-~~~ni~~va~ai~~v 395 (396)
T COG1448 370 VA----------------------SG--RINVAGL-NTSNIDYVAKAIAAV 395 (396)
T ss_pred ec----------------------CC--eeeeccC-ChhhHHHHHHHHHhh
Confidence 41 12 9999875 577799999998765
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-14 Score=139.59 Aligned_cols=323 Identities=16% Similarity=0.137 Sum_probs=194.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|..++.|.+++.+.+.... . +. ...+...++-++|++.+.. .+.+.|+++||+|++.++. ++|.+
T Consensus 113 lGh~~p~v~~av~~ql~~~~----~-~~-~~~~~~~~lAe~l~~~~p~--~~~v~f~~SGsEA~e~Alk-lAR~~----- 178 (474)
T PLN02482 113 IGHADDEVLAALAETMKKGT----S-FG-APCLLENVLAEMVIDAVPS--VEMVRFVNSGTEACMGVLR-LARAY----- 178 (474)
T ss_pred cCCCCHHHHHHHHHHHhhCC----C-CC-CCCHHHHHHHHHHHHhCCC--CCEEEEeCChHHHHHHHHH-HHHHh-----
Confidence 46777889999999886531 1 11 1234556777788887753 4799999999999999998 45544
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHh----------cCc------EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTR----------AGG------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~----------~g~------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
..+.+|+.....|++....+...+.. .|. .+..+ +.++ ++.+++.+++. .+++
T Consensus 179 tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~nd----~~~l~~~l~~~---~~~i 247 (474)
T PLN02482 179 TGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTA----PYND----LEAVKKLFEAN---KGEI 247 (474)
T ss_pred cCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEe----cCCC----hHHHHHHHHhC---CCce
Confidence 34568998888888854332111000 000 01111 2221 57788777542 4678
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCc-c----ccccccCccEEEEcCcccCcCCCCcE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSI-K----IDVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~-~----~~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
++|+++......|.+.| +++|.++|++||+ ++|+|+++. |.. . .......+|++++ .|.+.|+..+|
T Consensus 248 AavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~-lLI~DEV~t-GfR~g~~ga~~~~gv~PDi~t~--gK~lggG~Pig 323 (474)
T PLN02482 248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGA-LLVFDEVMT-GFRIAYGGAQEYFGITPDLTTL--GKVIGGGLPVG 323 (474)
T ss_pred EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecccc-CeecCcchHhHHhCCCCCEEEe--cchhhCCCceE
Confidence 99999999988998877 5589999999999 899999985 321 0 0112235888766 59887655578
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccc--cCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGT--RDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
.+..++++.+. + .+. ... ...+| .+.....+..++++.+.+ +.+.+++.++.++|++.|.+
T Consensus 324 av~g~~ei~~~-~-~~~------~~~----~~~~T~~gnpl~~aAala~L~~l~~-----~~~~~~~~~~g~~l~~~L~~ 386 (474)
T PLN02482 324 AYGGRREIMEM-V-APA------GPM----YQAGTLSGNPLAMTAGIHTLKRLQQ-----PGTYEYLDKITKKLIQGILE 386 (474)
T ss_pred EEEEcHHHHHh-h-ccC------CCc----ccccCcchhHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHH
Confidence 88888888775 2 110 000 00122 122223333344555542 34678888899999999887
Q ss_pred Hc---CCCcCCCcccccceEEEEcCC--ccc-----cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 341 AW---GTSLGSPPEICAAMVMVGLPS--RLR-----VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 341 ~~---~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
+. +..+... ...+++.+.+.. ... ..+......+...|.++ ||++......
T Consensus 387 l~~~~g~~~~~~--~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-Gv~~~~~~~~---------------- 447 (474)
T PLN02482 387 AGKKAGHEMCGG--YISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEE-GVYLAPSQFE---------------- 447 (474)
T ss_pred HHHhcCCCEEEc--ccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHC-CeEEeccCCC----------------
Confidence 62 1222111 112233332211 000 00111234677777664 9998532110
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+ .++..+|++||+++++++++++.
T Consensus 448 --~~----~psl~ht~~dId~~l~al~~~l~ 472 (474)
T PLN02482 448 --AG----FTSLAHTEEDIDFTIAAAERVLA 472 (474)
T ss_pred --CC----cCCCCCCHHHHHHHHHHHHHHHH
Confidence 01 14455699999999999999875
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.4e-14 Score=138.23 Aligned_cols=331 Identities=13% Similarity=0.152 Sum_probs=195.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.+.+++.+.+.... . + ....+...++-++|.+.++.. .+.+.|+++||+|++.++. ++|.+
T Consensus 67 lGh~~p~v~~ai~~q~~~~~----~-~-~~~~~~~~~la~~L~~~~~~~-~~~v~f~~SGsEA~e~Aik-lAr~~----- 133 (433)
T PRK00615 67 HGHSHPKICDAIQQGAERGT----S-Y-GLTSEQEILFAEELFSYLGLE-DHKIRFVSSGTEATMTAVR-LARGI----- 133 (433)
T ss_pred cCCCCHHHHHHHHHHHHhCC----C-C-CCCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHH-HHHHh-----
Confidence 46777889999988876531 1 1 112345677788888887643 3699999999999999998 44443
Q ss_pred CCCCEEEEeCCcchhHHHH-HHHHHHhcCcE---E-EEE--eCC------CCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 128 HRNDTVLMLHCAFQAVKKS-IQAYVTRAGGS---V-VEV--QLP------FPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~-~~~~a~~~g~~---v-~~~--~~~------~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
..+.+|+....+|++.... +..+ ...+.. . ... +.. .+.++ .+.+++.+++. ..++++|
T Consensus 134 tgr~~ii~~~~~yHG~td~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~~---~~~~aav 205 (433)
T PRK00615 134 TGRSIIIKFLGCYHGHADTLLQGI-SFSETSLDTLTHLVDTDLAHPLTLSLPYND----FQIFQTVMNSL---GHRVAGV 205 (433)
T ss_pred hCCCEEEEEcCccCCCCcccCccc-ccCCCCcCcCCCCCCCCCCCCCeEeCCCCC----HHHHHHHHHhc---CCceEEE
Confidence 3456888888888874311 1100 000100 0 000 000 01111 57778777543 3578899
Q ss_pred EEeccCCCCcccccH----HHHHHHHHHcCCCEEEEecccccCC-cc----ccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCVVIPV----RKLVKICRDEGVDQVFVDAAHAMGS-IK----IDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l----~~i~~l~~~~~~~~~ivD~a~~~g~-~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
+++....+.|.+.|. ++|.++|++||+ ++|+|+++. |. .. .......+|++++ +|.+.|+..+|+++
T Consensus 206 I~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~-llI~DEv~t-G~R~G~~ga~~~~gv~PDi~~~--gK~lggG~p~~av~ 281 (433)
T PRK00615 206 IFEPICANMGVVLPKPGFIEGIIQTCRRTGS-LSIMDEVVT-GFRVAQGGAAAIYHVKPDITVY--GKILGGGLPAAAVV 281 (433)
T ss_pred EECCCCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEcccc-cccccHhHHHHhcCCCCCeEEE--cccccCCcceeeee
Confidence 999999988998874 599999999999 899999984 32 11 1122336888875 59887544368888
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc---
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW--- 342 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~--- 342 (452)
+++++.+. + .+. + ......+ ...+.....+..++++.+.+ +.++++++++.+++.+.|++..
T Consensus 282 ~~~~i~~~-~-~~~-----~-~~~~~~T--~~g~p~~~aa~la~L~~i~~-----~~~~~~~~~~g~~l~~~l~~~~~~~ 346 (433)
T PRK00615 282 AHKSIMDH-L-APE-----G-TIFQAGT--LSGNPLAMAAGKASINLCRE-----QGFYTQLSTLEQNFLSPIEEMIRSQ 346 (433)
T ss_pred ecHHHHhh-h-cCC-----C-CcccCCC--CcccHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888775 2 110 0 0000001 11222233444445555543 3357778888888877776531
Q ss_pred CCCcCCCcccccceEEEEcCCcc--cc-----CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 343 GTSLGSPPEICAAMVMVGLPSRL--RV-----MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
++.+.. .. .+.++.+.+.+.. .. .+......+...|.++ ||++..... +.
T Consensus 347 g~~v~~-~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~--------------------~~ 403 (433)
T PRK00615 347 GFPVSL-VR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSK-GVYLSPSPF--------------------EA 403 (433)
T ss_pred CCCeEE-Ee-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHC-CeeecCccc--------------------cc
Confidence 233211 11 2455555553110 00 0111234677888664 999853211 11
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
..++..+|++||+++++++.++++.-
T Consensus 404 --~~ls~~ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 404 --SFLSSAHSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred --cceecCCCHHHHHHHHHHHHHHHHHH
Confidence 13344459999999999999998764
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-14 Score=136.01 Aligned_cols=337 Identities=14% Similarity=0.080 Sum_probs=204.5
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccC-----C-CCCCCEEEEeCCcchhHHHHHHHH
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG-----R-FHRNDTVLMLHCAFQAVKKSIQAY 150 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~-----~-~~~g~~Vl~~~~~~~s~~~~~~~~ 150 (452)
.+.-...++-....+..|-+....-+|++||+-++..+..+..-+.... . .-|.-.+.+++.+|.|+.++..++
T Consensus 138 vF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~l 217 (510)
T KOG0629|consen 138 VFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFL 217 (510)
T ss_pred eEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHh
Confidence 3344456777778888887633366888888888777776442222110 0 011123456788999998887765
Q ss_pred HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecc
Q 012991 151 VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAA 229 (452)
Q Consensus 151 a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a 229 (452)
...--.++.+ +.++.+.+ +++||+.|-.....+..|.+|-++..++..|++.|++.|+++|++|++ ++|||+|
T Consensus 218 -g~gtd~c~~v----~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~l-WmHvDAA 291 (510)
T KOG0629|consen 218 -GLGTDHCIKV----KTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKL-WMHVDAA 291 (510)
T ss_pred -ccCCceeEEe----cccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCE-EEEeecc
Confidence 2112567777 56778888 999999987654445568999999999999999999999999999999 5999999
Q ss_pred cccCCcc-cc----ccc-cCccEEEEcCcccCcCCCCcEEEEEecCc-ccc-------CCCCCceeccCCCCcccccccc
Q 012991 230 HAMGSIK-ID----VKE-IGADFYVSNLHKWFFCPPSVAFLYCRKSI-LSS-------DMHHPVVSHEFGNGLPIESAWI 295 (452)
Q Consensus 230 ~~~g~~~-~~----~~~-~~~d~~~~s~~K~l~g~~G~G~l~~~~~~-~~~-------~l~~~~~~~~~~~~~~~~~~~~ 295 (452)
.+.|.+- .. +.. -.+|.++.++||+++.|..++..+.+.+- +.. ++...- ..|.... +..--
T Consensus 292 wGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~d--K~YdvS~--DTgdK 367 (510)
T KOG0629|consen 292 WGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQD--KFYDVSY--DTGDK 367 (510)
T ss_pred cccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccC--ceeeccc--ccccc
Confidence 8876541 11 111 14789999999998888777777766443 221 011100 0111110 00000
Q ss_pred cccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-ccccceEEEE-cCCcccc-CC--h
Q 012991 296 GTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-EICAAMVMVG-LPSRLRV-MG--E 370 (452)
Q Consensus 296 ~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~-~~--~ 370 (452)
+.....-.-.....+-|-..-.+|+++-.+++.++++|+.+.|++..++...... ....+ ++|+ .|..... .. .
T Consensus 368 ~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~n-v~fw~vp~~lR~~~~~~e 446 (510)
T KOG0629|consen 368 AIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVN-VCFWYVPPSLRGWQENPE 446 (510)
T ss_pred hhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEE-EeeccCchHhccCcccch
Confidence 1111111111222333333323589999999999999999999999886543332 22122 3332 2322111 10 0
Q ss_pred hh------HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc-cCCHHHHHHHHHHHHHHH
Q 012991 371 DD------ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV-YNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 371 ~~------~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~~di~~l~~~l~~~~ 440 (452)
.+ +..+.+...++ |-... +|.+. ...++++|+.+.. ..+.+|++-+++.|.++-
T Consensus 447 ~~~rL~kVaPkIK~~Mm~~-Gt~Mi-~YqPl--------------~~~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 447 RDSRLVKVAPKIKERMMKK-GTTMI-GYQPL--------------GDKPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred hhhHHHhhCcHHHHHHHhc-cceee-Eeccc--------------ccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 00 12344444444 44432 23321 3567799998854 357899999999987764
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-13 Score=122.72 Aligned_cols=349 Identities=15% Similarity=0.155 Sum_probs=235.9
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch-----hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe-cChhHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD-----FYFNSLRKGILESRAAVKDLINADDVGEISLV-DNATTAA 111 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t-~g~t~a~ 111 (452)
+.+++|..| +...|.+|+..+++-+.++++.+.+ +.+..+..++.+.+..+.+++++|+...|+|. .|||..+
T Consensus 6 ~~vvnFaaG-PAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qF 84 (370)
T KOG2790|consen 6 ERVVNFAAG-PAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQF 84 (370)
T ss_pred cceeecCCC-cccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccc
Confidence 457788744 6677888888887777666655433 34567778899999999999999977788776 4678777
Q ss_pred HHHHHHhhcccccCCCCCC---CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHH--HHHHHHHhcccc
Q 012991 112 AIVLQQIGRGFTEGRFHRN---DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEII--NEFKKGIEKGKK 186 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g---~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~--~~l~~~i~~~~~ 186 (452)
..+..+|.- ++.| |-|++-..+ .+++.. |.+.|..-..++-- ..-.++.++ +.++ +
T Consensus 85 aAv~lNL~g------lK~g~~AdYiVTGsWS----~KA~~E-Akk~~~~~~V~~~~-k~y~ygkvPd~~~w~--~----- 145 (370)
T KOG2790|consen 85 AAVPLNLIG------LKHGRCADYVVTGSWS----AKAAEE-AKKYGTPNIVIPKL-KSYTYGKVPDPSTWE--L----- 145 (370)
T ss_pred cccchhhhc------cccCCccceEEecccc----HHHHHH-HHhhCCceEEeccc-cccccCcCCChhhcc--c-----
Confidence 777777741 3444 456664433 255555 56666543333210 101122332 2222 2
Q ss_pred CCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 187 DGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
+++-+.|+.|...+..|+-++.-. +-.-++. +++.|-.+-+-..++|+..+ +++....+|. .||.|+.++++
T Consensus 146 -~~da~yvyyCaNETVHGVEf~~~P---~~~~~~~-vlVaDmSSnflSrpvDvsk~--gvi~aGAQKN-~G~aG~Tvviv 217 (370)
T KOG2790|consen 146 -NPDASYVYYCANETVHGVEFDFIP---VNDPKGA-VLVADMSSNFLSRPVDVSKF--GVIFAGAQKN-VGPAGVTVVIV 217 (370)
T ss_pred -CCCccEEEEecCceeeceecCCCC---CCCCCCc-eEEEecccchhcCCccchhc--ceEEeccccc-cCccccEEEEE
Confidence 566678999999999999765322 1223578 79999888888899999876 5688889996 89999999999
Q ss_pred ecCccccCC-CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 267 RKSILSSDM-HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 267 ~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
|++++.... ..|.. .+|-. +..+..-..||+...++.+...++|+.+ .+|+.++.+...+.+..+++.+.+.-|+-
T Consensus 218 r~dllg~~~~~tP~v-~dyk~-~~~NnSlyNTpP~f~iy~~~Lv~~~il~-~GGl~a~e~~n~~KskllYd~iD~s~gfy 294 (370)
T KOG2790|consen 218 RKDLLGNALDITPSV-LDYKI-MDKNNSLYNTPPCFGIYVMGLVFEWILE-KGGLAAMEKLNQEKSKLLYDAIDNSNGFY 294 (370)
T ss_pred ehhhhcccccCCccc-cceee-eccccccccCCCeeeeeehhhHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhcCCeE
Confidence 999987611 11211 01110 1122334578999999999999999998 58999999999999999999999875653
Q ss_pred -cCCCccccc-ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 346 -LGSPPEICA-AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 346 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
.+-.+..++ .-+.|++.+ +....+-+.++. ++ +..--.++++ .|.+|.|+-..
T Consensus 295 ~cpVe~~~RS~MNV~Fri~~-----d~Le~eFLkeA~-~~-~mv~LKGhRS------------------VGGiRASlYNA 349 (370)
T KOG2790|consen 295 RCPVEPSVRSRMNVPFRIEK-----DELEAEFLKEAA-KE-HMVQLKGHRS------------------VGGIRASLYNA 349 (370)
T ss_pred Ecccchhhhhhcccceeecc-----hHHHHHHHHHHH-Hh-hhhccccccc------------------cccchhhhhcc
Confidence 222222223 235677742 455555565655 43 4432233433 46899999888
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 012991 424 NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~ 442 (452)
.+-+++++|++.|+++.+.
T Consensus 350 isv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 350 ISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 8999999999999998753
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-13 Score=121.41 Aligned_cols=328 Identities=14% Similarity=0.145 Sum_probs=210.3
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccccc--CC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTE--GR 126 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~--~~ 126 (452)
|...+.+++++++..+.+.- .++ ........+..+.+.++|+. +.++-++.|.+|.+.++. |+|+|.. .-
T Consensus 74 Ghchpki~~aLqeq~~kLtl-ssr---afYnd~~~~f~~~vt~lf~~---~kvlpmnTGaEa~Eta~K-LaR~wgy~~K~ 145 (427)
T KOG1402|consen 74 GHCHPKIIKALQEQADKLTL-SSR---AFYNDVLGEFAEYVTKLFGY---DKVLPMNTGAEAVETACK-LARKWGYRKKN 145 (427)
T ss_pred CCCCHHHHHHHHHHHhHhhh-hhH---HHhhhhHHHHHHHHHHhcCc---ceeeecccchhHHHHHHH-HHHHHHHhhcc
Confidence 34445599999888775421 112 11245677888999999998 478888889999999998 5555432 11
Q ss_pred CCCCC-EEEEeCCcchhHHHHHHHHH------HhcCc----EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 127 FHRND-TVLMLHCAFQAVKKSIQAYV------TRAGG----SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 127 ~~~g~-~Vl~~~~~~~s~~~~~~~~a------~~~g~----~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
...+. .|+....+|++-..++-.++ ..+|- -+..+ |.++ .++|+.+++ .++.++++
T Consensus 146 ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v----~Y~d----~eale~~l~-----~~~vaaFi 212 (427)
T KOG1402|consen 146 IPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKV----PYGD----AEALEVALK-----SPNVAAFI 212 (427)
T ss_pred CCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceee----ccCC----HHHHHHHhc-----CCCeeEEE
Confidence 22233 45555666654221111100 00010 01111 1111 688999997 68899999
Q ss_pred EeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCC-----ccccccccCccEEEEcCcccCcC-CCCcEEEE
Q 012991 196 IDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGS-----IKIDVKEIGADFYVSNLHKWFFC-PPSVAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K~l~g-~~G~G~l~ 265 (452)
++.++.--|++.| ++.+.++|++||+ ++|.|+.|+.-. ...|.....+|++++. |.|.| .+.++.++
T Consensus 213 vEPIQGEaGVvvP~~GYL~~vreLCtkynv-l~I~DEvQTGl~RTGk~la~d~env~PDivilg--KalSGG~~Pvsavl 289 (427)
T KOG1402|consen 213 VEPIQGEAGVVVPPPGYLKKVRELCTKYNV-LLIADEVQTGLARTGKLLACDYENVRPDIVILG--KALSGGVYPVSAVL 289 (427)
T ss_pred eeccccccceEeCCchhHHHHHHHHHhhcE-EEEehhhhhcccccCcEEEeehhhcCCCeEEEe--ccccCCeeeeEEEE
Confidence 9999999999987 7899999999999 999999986422 2457777789999987 77654 34467777
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-C
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-T 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~ 344 (452)
+.+++... +.|-. ..+++.|.| ......-++++.+. .+.+.++...+...++..|.+++. +
T Consensus 290 ~~~~im~~--~~pge---------HgsTyggNp--Lg~~vaiAalevi~-----eekL~era~~lG~~l~~~L~~l~~~~ 351 (427)
T KOG1402|consen 290 ADDDIMLN--IKPGE---------HGSTYGGNP--LGCAVAIAALEVIV-----EEKLVERAAKLGEILRDQLNKLQKKF 351 (427)
T ss_pred ecHHHHhc--cCCCc---------cccccCCCh--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 77777654 22221 111112222 22222334556655 477889999999999999988742 2
Q ss_pred -CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 345 -SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 345 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
.+......++.+..+.+... ...+.++.+++-.|.+ .|+...+.+ ++.||+.+...
T Consensus 352 p~~v~~VRGrGl~~ai~i~~~--~~~~~~aw~~cl~lk~-~g~LAkptH--------------------~~IiRfaPPL~ 408 (427)
T KOG1402|consen 352 PHVVKEVRGRGLLNAIVINPS--KTSGQDAWDVCLALKE-NGLLAKPTH--------------------GNIIRFAPPLV 408 (427)
T ss_pred cchhheeeccceEEEEEeccc--cccchhHHHHHHcccc-cccccCCCC--------------------CCeEEecCCcc
Confidence 12333333455554443210 0124577788888865 488764332 35999999998
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 012991 424 NTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~ 441 (452)
.+++|++.-+++|++.+.
T Consensus 409 I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 409 ISEEDLREGIEAIEKTIA 426 (427)
T ss_pred cCHHHHHHHHHHHHHHhc
Confidence 999999999999998764
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=140.95 Aligned_cols=195 Identities=15% Similarity=0.208 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCE
Q 012991 53 KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDT 132 (452)
Q Consensus 53 ~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~ 132 (452)
+++++++.+.. .+.. .|+.++...++++.+++++|.+ ..+|+++||.|+.+++.++ +++++.
T Consensus 9 ~~m~~a~~~a~-----~gd~--~Yg~D~~~~~l~~~i~~l~g~e---~a~f~~sGT~An~~al~~~--------~~~~~~ 70 (290)
T PF01212_consen 9 PAMLEAMAAAN-----VGDD--AYGEDPTTARLEERIAELFGKE---AALFVPSGTMANQLALRAH--------LRPGES 70 (290)
T ss_dssp HHEEHHHHHTT-----SB-C--CTTSSHHHHHHHHHHHHHHTSS---EEEEESSHHHHHHHHHHHH--------HHTTEE
T ss_pred HHHHHHHHccc-----cCCc--ccCCChhHHHHHHHHHHHcCCC---EEEEeCCCChHHHHHHHHH--------HhcCCc
Confidence 33777774321 1222 3667788999999999999995 5679999999999999988 378899
Q ss_pred EEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-cccccH-
Q 012991 133 VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIPV- 209 (452)
Q Consensus 133 Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~l- 209 (452)
|+..++.|..+...-.. +...|.++..++ ..+.+.+ +++|++.++....+..++++|.++++++.. |.++++
T Consensus 71 vi~~~~aHi~~~E~ga~-~~~~G~~~~~l~----~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~ 145 (290)
T PF01212_consen 71 VICADTAHIHFDETGAI-EELSGAKLIPLP----SDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLE 145 (290)
T ss_dssp EEEETTEHHHHSSTTHH-HHHTTCEEEEEB----ECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HH
T ss_pred eeccccceeeeeccchh-hHhcCcEEEECC----CcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHH
Confidence 99998888755433221 345799999994 3343666 999999998754445789999999988753 888875
Q ss_pred --HHHHHHHHHcCCCEEEEeccc---c---cCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCcccc
Q 012991 210 --RKLVKICRDEGVDQVFVDAAH---A---MGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSS 273 (452)
Q Consensus 210 --~~i~~l~~~~~~~~~ivD~a~---~---~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~ 273 (452)
++|.++||++|+ .+|+|||- + .+....++. .++|++++|++|.++.+.| ++++++++.++.
T Consensus 146 el~ai~~~a~~~gl-~lhmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~~G-avl~~~~~~i~~ 214 (290)
T PF01212_consen 146 ELRAISELAREHGL-PLHMDGARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAPGG-AVLAGNKEFIAK 214 (290)
T ss_dssp HHHHHHHHHHHHT--EEEEEETTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SSSE-EEEEESHHHHHH
T ss_pred HHHHHHHHHHhCce-EEEEehhhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccccc-eEEEechHHHHH
Confidence 467888999999 89999982 2 233233333 3699999999998555554 888899886654
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-13 Score=132.42 Aligned_cols=333 Identities=15% Similarity=0.092 Sum_probs=180.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+.... . +. .......++.++|++++.. .+.+.|+++||+|++.++. ++|.+
T Consensus 61 ~lGh~~p~v~~Ai~~q~~~~~----~-~~-~~~~~~~~la~~l~~~~p~--~~~v~f~~sGseA~e~Alk-lAr~~---- 127 (431)
T PRK06209 61 GLGHAYPPVVEAVREALQDGC----N-FT-RPSAIELDAAESFLELIDG--ADMVKFCKNGSDATSAAVR-LARAY---- 127 (431)
T ss_pred hcCCCCHHHHHHHHHHHHhCc----C-CC-CCCHHHHHHHHHHHHhCCc--cceEEEecCHHHHHHHHHH-HHHHH----
Confidence 456777889999999887532 1 11 1233344677888888753 3689999999999999998 55544
Q ss_pred CCCCCEEEEe-CCcchhHHHHHHHH-HHhcCcE--EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCC
Q 012991 127 FHRNDTVLML-HCAFQAVKKSIQAY-VTRAGGS--VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSM 202 (452)
Q Consensus 127 ~~~g~~Vl~~-~~~~~s~~~~~~~~-a~~~g~~--v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~ 202 (452)
....+|+.. ...|++........ ....+.. +.......+.++ ++.+++.+++. ..++++|+++....+
T Consensus 128 -tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~~---~~~~aavi~Epv~g~ 199 (431)
T PRK06209 128 -TGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYND----IASLEALFEDH---PGRIACVILEPATAD 199 (431)
T ss_pred -hCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCCC----HHHHHHHHHhC---CCCEEEEEEccccCC
Confidence 233566665 34443311110000 0000100 000000012222 67888888642 356888888776544
Q ss_pred CcccccHHHHHHHHHHcCCCEEEEecccccCCccc--cc---cccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC
Q 012991 203 PCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI--DV---KEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277 (452)
Q Consensus 203 tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~--~~---~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~ 277 (452)
.+....+++|.++|++||+ ++|+|+++. |.... .. ....+|++++ .|.++|+..+|+++.++++.+. +
T Consensus 200 ~~~~~~l~~l~~lc~~~g~-lLI~DEv~t-G~~~~~~g~~~~~gv~PDi~t~--gK~lggG~p~~av~~~~~i~~~-~-- 272 (431)
T PRK06209 200 EPQDGFLHEVRRLCHENGA-LFILDEMIT-GFRWHMRGAQKLYGIVPDLSCF--GKALGNGFAVSALAGKREYMEL-G-- 272 (431)
T ss_pred CCCHHHHHHHHHHHHHcCC-EEEEEcccc-cCCcCcchhhHHhCCCcceeee--hhhhcCCcccEEEEEHHHHHhh-h--
Confidence 3333348899999999999 899999983 32111 11 1235788665 5988765446888888776653 0
Q ss_pred CceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCC---cccc
Q 012991 278 PVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GTSLGSP---PEIC 353 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~---~~~~ 353 (452)
.+....... ......+.+++.....+..++++.+.+ +.+.++.+++.+++++.|.++. ...+... ....
T Consensus 273 ~~~~~~~~~--~~~~~~T~~~np~~~aaa~a~l~~i~~-----~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~ 345 (431)
T PRK06209 273 GLEHTDRER--VFLLSTTHGAETHALAAAIATMAIYRD-----EDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRP 345 (431)
T ss_pred cccccCCCC--ceeeccCCCCCHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecce
Confidence 000000000 000001122333445555566676664 2357777788888888776541 1111111 1111
Q ss_pred cceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHH
Q 012991 354 AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFR 433 (452)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~ 433 (452)
..+..+... ..+.....-...+.+.|.++ ||.++ .++++ ..+|++||++++
T Consensus 346 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-Gi~~p-------------------------~l~is--~~ht~~dId~~l 396 (431)
T PRK06209 346 CCLTYSTLD-GNGQPSQAFRTLFLQETIRR-GVLMP-------------------------SLVVS--YAHGDADIERTI 396 (431)
T ss_pred EEEEEecCC-cccCCcHHHHHHHHHHHHHC-Ccccc-------------------------ccccc--ccCCHHHHHHHH
Confidence 112221111 00000111123566777664 98763 24454 346999999999
Q ss_pred HHHHHHHhcc
Q 012991 434 DAVILLVEEG 443 (452)
Q Consensus 434 ~~l~~~~~~~ 443 (452)
+++.+++..-
T Consensus 397 ~~l~~~l~~~ 406 (431)
T PRK06209 397 DAVHGALGVY 406 (431)
T ss_pred HHHHHHHHHH
Confidence 9999888653
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=136.23 Aligned_cols=355 Identities=11% Similarity=0.059 Sum_probs=201.6
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC--
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH-- 128 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~-- 128 (452)
..+.+.+++.+.+..+. +..+.....+...++-++|++..+.+..+.++|++||++|++.++....++|....-.
T Consensus 383 ~~p~I~~Ai~~Qa~rl~---hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~ 459 (817)
T PLN02974 383 LQPELARAVAYAAGRYG---HVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLE 459 (817)
T ss_pred CCHHHHHHHHHHHhhCC---ccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35669999998876641 1111111234456666777775442213689999999999999998553434211001
Q ss_pred -----------CCCEEEEeCCcchhHHHHHHHHHHhc---C---cE-----EEEEeCCC------------CCC------
Q 012991 129 -----------RNDTVLMLHCAFQAVKKSIQAYVTRA---G---GS-----VVEVQLPF------------PLA------ 168 (452)
Q Consensus 129 -----------~g~~Vl~~~~~~~s~~~~~~~~a~~~---g---~~-----v~~~~~~~------------~~~------ 168 (452)
...+||....+||+.......+.... + .. ...++.+. |..
T Consensus 460 ~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~ 539 (817)
T PLN02974 460 NSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLE 539 (817)
T ss_pred ccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccc
Confidence 24579999999888655544321100 0 00 01111100 000
Q ss_pred -----------------C---hHHH-HHHHHHHHhccc--cCCCceEEEEEecc-CCCCccccc----HHHHHHHHHHcC
Q 012991 169 -----------------S---EEEI-INEFKKGIEKGK--KDGKMIRLAIIDHI-TSMPCVVIP----VRKLVKICRDEG 220 (452)
Q Consensus 169 -----------------~---~~~~-~~~l~~~i~~~~--~~~~~~~lv~~~~~-~n~tG~~~~----l~~i~~l~~~~~ 220 (452)
+ .... .+.+++.|++.. ...+++.+|+++-. ....|++.+ ++.|.++|++||
T Consensus 540 ~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~g 619 (817)
T PLN02974 540 GEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRK 619 (817)
T ss_pred ccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhC
Confidence 0 0011 366777775311 12357899999984 666788865 778999999999
Q ss_pred CCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEEEEecCccccCCCCCceeccCCCCccccccc
Q 012991 221 VDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAW 294 (452)
Q Consensus 221 ~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (452)
+ ++|.|+++. +|-.. .+.....+|+++++ |.|.|+ ..+|.+++++++.+. +..+. .........++
T Consensus 620 i-lLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~g--KgLtgG~~Plaa~l~~~~I~~~-f~~~~----~~~~~~hg~Ty 691 (817)
T PLN02974 620 I-PVIFDEVFTGLWRLGVESAWELLGCKPDIACYA--KLLTGGLVPLAATLATEEVFEA-FRGPS----KLDALLHGHSY 691 (817)
T ss_pred C-EEEEeecccCCCcccchhhHHhcCCCCCEEeec--ccccCCCCccEEEEEcHHHHHh-hcccc----ccCCcccCCCC
Confidence 9 899999975 33221 22223458999988 988776 358999999888775 21110 00000000111
Q ss_pred ccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH-HHcCCCcCCCcccccceEEEEcCCccccCC--hh
Q 012991 295 IGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA-NAWGTSLGSPPEICAAMVMVGLPSRLRVMG--ED 371 (452)
Q Consensus 295 ~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 371 (452)
+-+..+..+..++++.+++. +-.+.+.++..++..++.+.|. .+.....+......+.++.+.+.+...... ..
T Consensus 692 --~gnpl~cAaala~L~~~~~~-~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~ 768 (817)
T PLN02974 692 --TAHPMGCAAAAKALQWYKDP-STNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSL 768 (817)
T ss_pred --CcCHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchH
Confidence 11222223333455555541 1234556666666666666662 232233333333446677776642100000 01
Q ss_pred hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 372 DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 372 ~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
-+..+.+.+..+.||.++.. ++.||+.+...+++++++++++.|.+.+
T Consensus 769 ~a~~v~~~~~~~~Gl~~r~~---------------------Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 769 YARSVVRRLRREDGIYARPL---------------------GNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred HHHHHHHHHHHhCCEEEEec---------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 24567778872359998631 2589999888899999999999998765
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=121.02 Aligned_cols=333 Identities=16% Similarity=0.140 Sum_probs=205.4
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
|...+.|.+++.+.+..++ ..... + ..+-..++.+.|+..+..+ -..++|++||++|+++++. ++|.|+
T Consensus 65 GHchP~v~~a~~kQl~~l~-H~t~~--~-~~~pi~~~Ae~L~s~~P~~-l~~vfF~nsGsEANelal~-mar~Yt----- 133 (442)
T KOG1404|consen 65 GHCHPDVVAAAVKQLKKLY-HTTSG--Y-LNPPIHDLAEALVSKLPGD-LKVVFFVNSGSEANELALK-MARLYT----- 133 (442)
T ss_pred CCCChHHHHHHHHhhhhhE-Eeecc--c-cCCcHHHHHHHHHHhCCCC-ceEEEEecCCchHHHHHHH-HHHHhc-----
Confidence 4455668888888775432 11111 2 2334567777788877664 5678999999999999987 666653
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeC------------C------CCCCC----hHHHHHHHHHHHhcccc
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQL------------P------FPLAS----EEEIINEFKKGIEKGKK 186 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~------------~------~~~~~----~~~~~~~l~~~i~~~~~ 186 (452)
..-+||..+.+|+++.....- ..+......+. + ++-++ .+.+.++++..+....
T Consensus 134 ~~~diIa~r~~YHG~t~~t~g---lt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~- 209 (442)
T KOG1404|consen 134 GNLDIIARRNSYHGNTLYTLG---LTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDG- 209 (442)
T ss_pred CCceEEEeeccccCCchhhcc---cccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcC-
Confidence 233788888888776433211 11211111111 0 11111 1222566666665432
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCc----cccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSI----KIDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~----~~~~~~~~~d~~~~s~~K~l~g 257 (452)
.+.+++++.+.+....|.+.+ ++++.++|+++|. ++|.|++++. |-. .++-...-+|+++.+ |.|++
T Consensus 210 -~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Gg-l~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmA--KgiGn 285 (442)
T KOG1404|consen 210 -PETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGG-LFIADEVQTGFGRTGHMWGFESHGVVPDIVTMA--KGIGN 285 (442)
T ss_pred -CCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCC-EEEehhhhhccccccccccccccCCCccHHHHH--hhccC
Confidence 345789999999998898864 7899999999999 9999999863 322 223333347888776 98887
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
...+|.++..+++... +.... .+ . .++ +..+.+...+ .++++.++ .+++.++..+...+|.+.
T Consensus 286 G~Pl~AVvtt~EIa~v-~~~~~-~~--f------nTy-ggnP~a~avg-~aVL~Vik-----ee~LqE~aa~vG~yl~~~ 348 (442)
T KOG1404|consen 286 GFPLGAVVTTPEIADV-LNQKS-SH--F------NTY-GGNPVACAVG-LAVLKVIK-----EENLQENAAEVGSYLLEK 348 (442)
T ss_pred CCcceeeecCHHHHHH-HHhcc-cc--c------ccc-CCCchhHHHH-HHHHHHHH-----HHhHHHHHHHHHHHHHHH
Confidence 7668999998887765 21111 00 0 001 2222222222 23555555 478899999999999999
Q ss_pred HHHHcC-CCcCCCcccccceEEEEcCC-ccccCC--hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 338 LANAWG-TSLGSPPEICAAMVMVGLPS-RLRVMG--EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 338 L~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
|.++.. .++++....++-++-+.+-+ ...... ..-...+.+.+.+ +|+.+..+. ..+
T Consensus 349 l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke-~Gvlvg~g~------------------i~G 409 (442)
T KOG1404|consen 349 LAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKE-LGVLVGKGG------------------IHG 409 (442)
T ss_pred HHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHH-hCeeeeccc------------------ccc
Confidence 988743 45666555555555555421 101111 1122356777755 699995433 234
Q ss_pred ceEEecccccCCHHHHHHHHHHH
Q 012991 414 GYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l 436 (452)
+.+||++..--|.+|++.+++..
T Consensus 410 ~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 410 NVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred eEEEecCCeeccHHHHHHHHHHH
Confidence 59999999888999998777755
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-12 Score=120.81 Aligned_cols=338 Identities=18% Similarity=0.186 Sum_probs=218.1
Q ss_pred EeccCCCC-CCcHHHHH-HHHHHHHHHhcC-Cchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 42 RINNGSFG-SCPKSVLA-DQQKWQLKFLQQ-PDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 42 ~l~~~~~~-~~p~~v~e-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
|++.|.++ ..|+ |++ .+-+.-..+..+ |-.. -+.+..+.+.+.+..++++.|.+ ..+.-+--++|++-+.+..+
T Consensus 79 fiG~GyY~~~~P~-vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~-VANASm~DeaTAaAEAm~ma 156 (450)
T COG0403 79 FIGAGYYDTYTPP-VILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLD-VANASMLDEATAAAEAMLMA 156 (450)
T ss_pred hccCcccCCcCcH-HHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCC-cccchhhhhHHHHHHHHHHH
Confidence 67777777 4555 444 544322111100 1000 12344556788999999999996 77888888888887777776
Q ss_pred hhcccccCCCCC--CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 118 IGRGFTEGRFHR--NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 118 l~~~~~~~~~~~--g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.. ..+ .++|+++...|+.....++-+++..|+++...+. ++ .+++++. + ...+..++
T Consensus 157 ~r-------~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~----~d----~~~l~~~-~-----~~~~~gv~ 215 (450)
T COG0403 157 KR-------VTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDA----DD----LDDLESA-D-----DGDVFGVL 215 (450)
T ss_pred HH-------hhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEecc----ch----hhhhhhc-c-----ccCeEEEE
Confidence 52 233 5899999999999999998888888999998843 32 5777766 3 56899999
Q ss_pred EeccCCCCc-ccccHHHHHHHHHHcCCCEEEEec-ccccCCccccccccCccEEEEcCcccCcCC-----CCcEEEEEec
Q 012991 196 IDHITSMPC-VVIPVRKLVKICRDEGVDQVFVDA-AHAMGSIKIDVKEIGADFYVSNLHKWFFCP-----PSVAFLYCRK 268 (452)
Q Consensus 196 ~~~~~n~tG-~~~~l~~i~~l~~~~~~~~~ivD~-a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~-----~G~G~l~~~~ 268 (452)
+.+|++ .| ...++++|.+.+|++|. ++++=. --+++.+ -....+|+|+++++.+- ++-| +..|++.+++
T Consensus 216 vQyP~~-~G~~~~d~~~l~~~~h~~~a-l~~v~aDplaL~LL-~pPGe~GADIvvG~~Qr-fGvPmgfGGPhag~fA~~~ 291 (450)
T COG0403 216 VQYPNT-FGIVEEDLRALIEAAHSAGA-LVIVAADPLALGLL-KPPGEFGADIVVGSAQR-FGVPMGFGGPHAGYFAVKD 291 (450)
T ss_pred EecCCC-CCccchhHHHHHHHHhhcCC-EEEEEechhHhhcc-CCccccCCceEEecCcc-cCCCcCCCCcceeeeeEhH
Confidence 999985 67 66679999999999998 676642 2233333 23445699999999887 4333 3378999999
Q ss_pred CccccCCCCCcee---cc-CCCC---cccc------cccccccCccccccHHH-----HHHHHHHhhcCHHHHHHHHHHH
Q 012991 269 SILSSDMHHPVVS---HE-FGNG---LPIE------SAWIGTRDYSAQLVIPS-----AVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 269 ~~~~~~l~~~~~~---~~-~~~~---~~~~------~~~~~~~~~~~~~~~~~-----al~~~~~~~~g~~~~~~~~~~~ 330 (452)
+..++ ++..+. .+ .|.. +..+ +..-.|.|+....++.+ .+.++.. .|++++.+++.++
T Consensus 292 ~~~R~--mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp--~GLk~iA~r~~~~ 367 (450)
T COG0403 292 EFKRQ--MPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGP--QGLKEIAERIHRL 367 (450)
T ss_pred hHhhc--CCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHH
Confidence 99876 444331 11 1111 0000 11234455543333222 2234443 3899999999999
Q ss_pred HHHHHHHHHHHc-CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAW-GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 331 ~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+.++.++|.+.. |+++..... -.-+.++++ ......+.++... .||-++..
T Consensus 368 a~~la~~L~~~~~g~~~~~~~f--Fdt~~v~~~-------~~~~~~l~~~~~~-~G~~L~~~------------------ 419 (450)
T COG0403 368 AAYLAAGLKEIGAGVELVFDHF--FDTFTVRVP-------EEVAEALLAAAIA-GGINLRRV------------------ 419 (450)
T ss_pred HHHHHHHHhhcCCceEeccccc--eeeEEEecc-------hhHHHHHHHHHHh-cCCceeee------------------
Confidence 999999999763 456554311 122334443 1233445555433 47777532
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
....+-+++.-.+|.+||+.+++++....
T Consensus 420 --~~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 420 --DADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred --cCCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 23467888888889999999999987653
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=120.84 Aligned_cols=355 Identities=14% Similarity=0.149 Sum_probs=210.6
Q ss_pred CCCCeEEeccCCCC--CCcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGSFG--SCPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.+++++++...++. ...+.+.+.....+..+.-. =+....|+....=.++++.||+++|++ +.|+...|-+ ++.
T Consensus 92 ~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E--~aivYs~gF~-ti~ 168 (467)
T KOG1358|consen 92 DGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTE--DAIVYSYGFS-TIE 168 (467)
T ss_pred cCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCc--ceeeeccccc-hhh
Confidence 35667777666654 23344666655555544110 001112444455577999999999996 7777777665 456
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH---HHHHHHHHhccccCCC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI---INEFKKGIEKGKKDGK 189 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~~ 189 (452)
.++-++ .+.||.|+++...+.++..+++. . .-.+.++ .+++...+ ....+..-++.++. .
T Consensus 169 S~ipaf--------sKrGDIi~~de~~nfaIq~Glql--S--RS~i~~F----khndm~~lerll~E~~~~~~K~~k~-~ 231 (467)
T KOG1358|consen 169 SAIPAF--------SKRGDIIFVDEAVNFAIQKGLQL--S--RSTISYF----KHNDMEDLERLLPEQEDEDQKNPKK-A 231 (467)
T ss_pred hcchhh--------hccCcEEEEehhhhHHHHHHHhh--h--hheeEEe----cCCCHHHHHHhccCcchhhhhcccc-c
Confidence 666655 58899999998888887777654 2 3355555 44443222 11111111121111 1
Q ss_pred c-eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---------ccccccCccEEEEcCcccCcCCC
Q 012991 190 M-IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---------IDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 190 ~-~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
. .+.|+++...-++|.++|+++|.++..+|.. .+|+|+..++|... +.+..-.+|++++|..-. .+..
T Consensus 232 ~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~-RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~a-las~ 309 (467)
T KOG1358|consen 232 LTRRFIVVEGLYANTGDICPLPEIVKLKNKYKF-RVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETA-LASG 309 (467)
T ss_pred cceEEEEEEeeccCCCcccccHHHHHHHhhheE-EEEEecccccccccccCccccccCCCCccceeeeeeccccc-cccc
Confidence 2 4678899999999999999999999999999 89999998887542 223333579999998775 3444
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
| |+..++.-.... .... |.+.... ...|++....+. .++..+.+ ...+.+.++.....+...|.
T Consensus 310 G-gFc~G~~~i~~h---QrLS----g~~Y~fS---AslPp~la~aa~-~ai~i~~~----~p~~~~~L~~k~~~~H~~l~ 373 (467)
T KOG1358|consen 310 G-GFCAGKSFIADH---QRLS----GSGYCFS---ASLPPYLAGAAI-KAILIEEW----NPEIVQPLRAKVAKFHAALS 373 (467)
T ss_pred C-ceeecceeeEee---eecc----ccceeee---ccCchhhhhhHH-HHHHHHhh----Ccchhhhhhccccccchhhh
Confidence 3 565554333332 2221 1111111 134444333332 24444443 12256667777777888887
Q ss_pred HHcCCCcCCCcccccceEEEEcCCccccCC-hh-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 340 NAWGTSLGSPPEICAAMVMVGLPSRLRVMG-ED-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
...++.+.+.+. ++++.+.+.+...-.+ .. -.+++++....+ ++.+.....-.. .++ ...+..||
T Consensus 374 ~~s~~~v~~~~~--SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~---------~e~-~~~~pSir 440 (467)
T KOG1358|consen 374 SNSGFIVSGSPE--SPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEK---------LER-CPIPPSIR 440 (467)
T ss_pred cCCceEEecCcC--CceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhh---------ccc-CCCCCcEE
Confidence 665667766655 6777777653211110 11 124566666555 776632111000 000 23455799
Q ss_pred ecccccCCHHHHHHHHHHHHHHHh
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+++....+++|++++++.|+++..
T Consensus 441 i~~~a~~seeel~ra~~~ik~~~~ 464 (467)
T KOG1358|consen 441 ICVSAGMSEEELERAAELIKEVAS 464 (467)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=120.74 Aligned_cols=315 Identities=15% Similarity=0.164 Sum_probs=169.0
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccC-------CCC-CCCEEEEeCCcchhHHHHHH
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG-------RFH-RNDTVLMLHCAFQAVKKSIQ 148 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~-------~~~-~g~~Vl~~~~~~~s~~~~~~ 148 (452)
+-..++.++|+..++++|++ ++++++..+++-. ++...+.+.+.+. ..+ +.-+.+.+.|.|.-+ .++
T Consensus 66 G~l~Gipe~r~l~a~llgv~-~~~viv~gNSSL~--lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRH-Fai- 140 (425)
T PF12897_consen 66 GGLDGIPEARELFAELLGVP-PENVIVGGNSSLN--LMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRH-FAI- 140 (425)
T ss_dssp S-SS--HHHHHHHHHHHTS--GGGEEE-SS-HHH--HHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHH-HHH-
T ss_pred CccCChHHHHHHHHHHhCCC-HHHEEEeccchHH--HHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHH-HHH-
Confidence 56778999999999999997 7888887666543 3333333333211 111 233789999998764 333
Q ss_pred HHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE-EEEeccCCCCcccccHHHHHHHHH----HcCCCE
Q 012991 149 AYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL-AIIDHITSMPCVVIPVRKLVKICR----DEGVDQ 223 (452)
Q Consensus 149 ~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l-v~~~~~~n~tG~~~~l~~i~~l~~----~~~~~~ 223 (452)
++..|++...||+ .+++...|.+|+.+.+ .+.+|. ..++--+||||..++-+.+.+++. ..+. .
T Consensus 141 --~E~~Giemi~VpM----~~dGPDmD~Ve~LV~~----D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DF-R 209 (425)
T PF12897_consen 141 --TEHFGIEMIPVPM----TEDGPDMDMVEELVAE----DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDF-R 209 (425)
T ss_dssp --HHHCT-EEEEEEE----ETTEE-HHHHHHHTHT----STTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT--E
T ss_pred --HHhhCcEEEecCC----CCCCCCHHHHHHHHhc----CCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCe-E
Confidence 6778999999954 5566668999998865 456665 467777999999999887777763 4588 8
Q ss_pred EEEecccccCCcc----c----ccc-----c--cCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCc
Q 012991 224 VFVDAAHAMGSIK----I----DVK-----E--IGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGL 288 (452)
Q Consensus 224 ~ivD~a~~~g~~~----~----~~~-----~--~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~ 288 (452)
++.|.|+++=++. . ++- . .+--++..|.+|--+.+.|++++..+++-+.. + ...+...
T Consensus 210 I~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~-~-~~~~~~~----- 282 (425)
T PF12897_consen 210 IFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAW-I-KKHLSVQ----- 282 (425)
T ss_dssp EEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHH-H-HHHHHHH-----
T ss_pred EEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHH-H-HHHhcCc-----
Confidence 9999998765441 1 110 0 12336778999977888889999888776664 1 1111000
Q ss_pred ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH----HHHHHHHHHH-Hc---CC-CcCCCcccccceEEE
Q 012991 289 PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ----ALKMARMLAN-AW---GT-SLGSPPEICAAMVMV 359 (452)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~----~~~l~~~L~~-~~---~~-~~~~~~~~~~~~~~~ 359 (452)
+=.++-.. .....+++...++|+.+..++..+. .+.+.+.|++ +. ++ +...|.+ +.|+++
T Consensus 283 ------tIgpdKvN---QLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~G--GYFIsl 351 (425)
T PF12897_consen 283 ------TIGPDKVN---QLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKG--GYFISL 351 (425)
T ss_dssp -------S---HHH---HHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SB--SS-EEE
T ss_pred ------eeCccHHH---HHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCC--ceEEEE
Confidence 00111111 2234556664322443333332222 2223334433 22 22 3455555 788888
Q ss_pred EcCCccccCChhhHHHHHHHHhhhcceEeee-cccCC-CCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 360 GLPSRLRVMGEDDALRLRGHLRVRFGVEVPI-HYQAP-KDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~-~~~~~-~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
... .-.++++.+...+ .||.+.. +..++ +. ...+..|||++++ .+.+|++..++.+.
T Consensus 352 d~~-------~G~AkrvV~lake-AGV~LT~AGAtfPyg~------------DP~D~nIRiAPS~-P~leel~~Am~~~~ 410 (425)
T PF12897_consen 352 DVL-------DGTAKRVVELAKE-AGVALTPAGATFPYGK------------DPRDSNIRIAPSY-PSLEELETAMDVFA 410 (425)
T ss_dssp EES-------TT-HHHHHHHHHH-TTEE---TTTTSGGG--------------TTS-EEEE--SS-S-HHHHHHHHHHHH
T ss_pred ecC-------CChHHHHHHHHHH-hCceeCCCCCCCCCCC------------CCCCCcEEecCCC-CCHHHHHHHHHHHH
Confidence 876 2367888888866 5999844 32221 11 1345689999975 57999999999999
Q ss_pred HHHhccccc
Q 012991 438 LLVEEGQVC 446 (452)
Q Consensus 438 ~~~~~~~~~ 446 (452)
-+++.....
T Consensus 411 ~cv~la~~e 419 (425)
T PF12897_consen 411 TCVKLAAVE 419 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888765544
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-12 Score=117.74 Aligned_cols=343 Identities=15% Similarity=0.141 Sum_probs=199.0
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCCcEEEecChhHHHHHHHHHhhcccccC
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVGEISLVDNATTAAAIVLQQIGRGFTEG 125 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~i~~t~g~t~a~~~~~~~l~~~~~~~ 125 (452)
.|..+++.-...+... +++...|+.++++.-+|+.+|+++... +++.|++|.|++.|+..++..+.+
T Consensus 87 fp~Dai~RA~~~L~~~---gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~----- 158 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDC---GGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA----- 158 (475)
T ss_pred CCHHHHHHHHHHHHhc---CCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc-----
Confidence 4444444444444433 333344667788899999999998532 478999999999999999998753
Q ss_pred CCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 126 RFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
.+.+-|+++-|.|+=....+..+ |...+..=+ ...+...+ .++|++.+++.. ..-+++++++-+|.||||
T Consensus 159 --~~~~GvliPiPQYPLYsAti~l~----~~~~v~YyL--dEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTG 229 (475)
T KOG0258|consen 159 --GKKTGVLIPIPQYPLYSATISLL----GGTQVPYYL--DEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTG 229 (475)
T ss_pred --CCCCceEeecCCCchhHHHHHHh----CCcccceee--ccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccc
Confidence 57789999999998765555433 444443322 11222233 788888777554 356889999999999999
Q ss_pred cccc---HHHHHHHHHHcCCCEEEEecccccCCcc-----c-------cccc---cCccEEEE-cCcccCc---CCCCcE
Q 012991 205 VVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK-----I-------DVKE---IGADFYVS-NLHKWFF---CPPSVA 262 (452)
Q Consensus 205 ~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~-------~~~~---~~~d~~~~-s~~K~l~---g~~G~G 262 (452)
.+.+ +++|..+|+++++ .++.|+++--.... . .+.. ..+-.+++ |.||... |..| |
T Consensus 230 qvls~e~ie~i~~fa~~~~l-~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RG-G 307 (475)
T KOG0258|consen 230 QVLSEENIEGIICFAAEEGL-VLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRG-G 307 (475)
T ss_pred hhhcHHHHHHHHHHHHHcCe-EEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccC-C
Confidence 9975 7789999999999 89999875321110 0 1111 12223333 6778754 3454 5
Q ss_pred EEEE---ecCcccc-------CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 263 FLYC---RKSILSS-------DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 263 ~l~~---~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
++=+ .++.... .+..+.. .+--....++.-.+|.+++.. +.. ..+.+.+.++..+.
T Consensus 308 YmEv~n~~prv~~qi~Kl~si~lc~~V~-GQ~~vdl~VnPP~Pgd~Sy~~---------~~~----Ekd~il~~l~~ra~ 373 (475)
T KOG0258|consen 308 YMESLNRDPRVKQQIKKLASIKLCPQVS-GQKLVDLVVNPPKPGDPSYDL---------FSS----EKDGILSSLRSRAK 373 (475)
T ss_pred eeecccCChhHHHHHHHHHhhhhcCCcc-chhhhceecCCCCCCCcchhh---------hhh----hhHhHHHHHHHHhH
Confidence 5432 1222221 0111110 000000111111223333321 112 23556667778888
Q ss_pred HHHHHHHHHcCCCcCCCcccccceEEEEcCCcccc---CChhhHH-HHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRV---MGEDDAL-RLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
.+.+.+..+.|+....+++.+..|--+.+|...-. ..+..++ -.+..|++.-||++.++..++
T Consensus 374 l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFG------------- 440 (475)
T KOG0258|consen 374 LTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFG------------- 440 (475)
T ss_pred HHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCC-------------
Confidence 89999999988887766653222333345521000 0011222 245566677899998777663
Q ss_pred CCCccc--eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 409 DGIITG--YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ~~~~~~--~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+| -+|.++-.-. .+-|+++-++=++++++
T Consensus 441 --Q~~GtyH~R~TiLp~~-~~~i~~~~~fH~~f~~~ 473 (475)
T KOG0258|consen 441 --QKEGTYHFRTTILPPG-LEIIEKFKKFHAEFMDE 473 (475)
T ss_pred --CCCceeEEEEeecCch-hHHHHHHHHHHHHHHHh
Confidence 3334 4888875433 35577776666666654
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=121.75 Aligned_cols=317 Identities=16% Similarity=0.131 Sum_probs=172.6
Q ss_pred HHHHHHhHhCCCCCCcEEEecChh-HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeC
Q 012991 85 SRAAVKDLINADDVGEISLVDNAT-TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQL 163 (452)
Q Consensus 85 ~~~~la~~~~~~~~~~i~~t~g~t-~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~ 163 (452)
+-.-+-+..|+++....++++-+| .++.+++.++.+ -...+.|+.+..+|.|-..++ ..+|.+++.++.
T Consensus 61 l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~------r~~a~~Viw~ridqkSc~kai----~~AGl~~~vV~~ 130 (389)
T PF05889_consen 61 LVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRM------RPKAKYVIWPRIDQKSCFKAI----ERAGLEPVVVEN 130 (389)
T ss_dssp HHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHH------HCT--EEEEEEEETHHHHHHH----HHTT-EEEEE-E
T ss_pred HHHHHHHHcCCccccceEEEecccccHHHHHHHHHhc------ccCCceEEEeeccccchHHHH----HhcCCeEEEeec
Confidence 333444557876444566666655 677777777741 135689999999999887776 456999999864
Q ss_pred CCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccccc-HHHHHHHHHHcCCCEEEEecccccCCccc-----
Q 012991 164 PFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP-VRKLVKICRDEGVDQVFVDAAHAMGSIKI----- 237 (452)
Q Consensus 164 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~-l~~i~~l~~~~~~~~~ivD~a~~~g~~~~----- 237 (452)
....+.-....+.+++.+++. +....+.++++.+...|...| +++|+++|++||+ +.++-+|+++-....
T Consensus 131 ~~~~d~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~I-PhlvNnAYgvQ~~~~~~~i~ 206 (389)
T PF05889_consen 131 VLEGDELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDI-PHLVNNAYGVQSSKCMHLIQ 206 (389)
T ss_dssp EEETTEEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT---EEEEGTTTTT-HHHHHHHH
T ss_pred cCCCCeeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCC-ceEEccchhhhHHHHHHHHH
Confidence 211111111167777777654 567789999999999999987 9999999999999 799999998822100
Q ss_pred -cccccCccEEEEcCcccCcCCCCcEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHH
Q 012991 238 -DVKEIGADFYVSNLHKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR 315 (452)
Q Consensus 238 -~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 315 (452)
-...-..|+++-|..|-|..|.|-+.++... ..+.. ....|+|.-+..+..-+..-+..+..
T Consensus 207 ~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~----------------vs~~YpGRas~sp~ld~~itLl~LG~ 270 (389)
T PF05889_consen 207 QAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILA----------------VSKEYPGRASASPSLDLFITLLSLGC 270 (389)
T ss_dssp HHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHH----------------HHHTSHSHBTSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHH----------------HHHHhhhhhhcccchHHHHHHHHHhh
Confidence 0001134566666666666666644444432 22322 11111222222222112222223332
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecc
Q 012991 316 FEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHY 392 (452)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~ 392 (452)
. |+..+.....+...++.+.|.+.. +-.+...+.+ .-.+.|.++..... ..-+...|...|..+ ||.-..+.
T Consensus 271 ~--g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N-~is~a~tl~~l~~~-~~k~~~~lgs~Lf~R-~VsG~RvV 345 (389)
T PF05889_consen 271 T--GYGALLKERKASFPYLKERLKKWAEEVGERLLETPRN-HISMAFTLDTLYEI-SQKDGTFLGSMLFKR-GVSGIRVV 345 (389)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT--SSEEEEE-TTCCTC-CSSHHHHHHHHHHHT-TEESSEEE
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-CeeEEEECccchhh-ccchhhhHHHHHHhC-Ccccceee
Confidence 2 566666666777777777776532 3233332321 23455565421111 113457888999775 77643322
Q ss_pred cCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 393 QAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+...+.. .+. ....-.++-++-....+.+||+.+++.|+++++
T Consensus 346 ~~~~~~~t--sh~---~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 346 TPGGKKQT--SHS---SNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp ETSSCEEE--TTS---S--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred ccCCCccc--ccC---CCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 21111000 000 022346899977777899999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=119.42 Aligned_cols=358 Identities=13% Similarity=0.052 Sum_probs=201.5
Q ss_pred eEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHh
Q 012991 40 VARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI 118 (452)
Q Consensus 40 ~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l 118 (452)
+|.|-+-+.. .+.+..+++|.. ++.. |.-++.+.++++.+++++|.+ .+++|..|+.+..++...+
T Consensus 43 ~IDLrSDTgT~apS~~m~aAM~~--------GDD~--Y~gdpSv~~Lee~vael~G~E---~alpthqGRgaE~Il~~~~ 109 (467)
T TIGR02617 43 FIDLLTDSGTGAVTQSMQAAMMR--------GDEA--YSGSRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIYIPVL 109 (467)
T ss_pred EEECccCCCCCCCCHHHHHHHHc--------CCcc--cccCchHHHHHHHHHHHhCCc---eEEECCCCchHHHHHHHhh
Confidence 4455444444 355657777764 2222 223445788999999999994 7889989999988888876
Q ss_pred hcccccCCCC-CCCEEEEeCC----cchhHHHHHHHHHHhcCcEEEEEeCCC------CCCChHHH-HHHHHHHHhcccc
Q 012991 119 GRGFTEGRFH-RNDTVLMLHC----AFQAVKKSIQAYVTRAGGSVVEVQLPF------PLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 119 ~~~~~~~~~~-~g~~Vl~~~~----~~~s~~~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
+ + +|+++.+... .|..+.......+...|+.++.+..+. +....+.+ ++++++.|+...
T Consensus 110 ~--------~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g- 180 (467)
T TIGR02617 110 I--------KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVG- 180 (467)
T ss_pred c--------ccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcC-
Confidence 3 4 6676664332 222222211111455688877753321 11123566 999999997431
Q ss_pred CCCceEEEEEecc-CCCCcccccH---HHHHHHHHHcCCCEEEEeccccc-----------CCccccccc------cCcc
Q 012991 187 DGKMIRLAIIDHI-TSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAM-----------GSIKIDVKE------IGAD 245 (452)
Q Consensus 187 ~~~~~~lv~~~~~-~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~-----------g~~~~~~~~------~~~d 245 (452)
.+++-.+..+-. |..-|...|+ +++.++|++||+ .+|+|+|--+ +....++.. ..+|
T Consensus 181 -~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GI-plhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aD 258 (467)
T TIGR02617 181 -PNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDI-PVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYAD 258 (467)
T ss_pred -CCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCC-cEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCC
Confidence 122323222222 3335878775 577889999999 7999986311 233333221 2589
Q ss_pred EEEEcCcccCcCCCCcEEEEEecC---ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHH
Q 012991 246 FYVSNLHKWFFCPPSVAFLYCRKS---ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDG 322 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G~G~l~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~ 322 (452)
.+++|++|.++.|.| |+++.+++ .+-. -.........|.. ..|..+...+-+++.++.... .+.
T Consensus 259 svt~slsKglgApvG-g~Lag~d~~~~~l~~-~~~~~~i~~EGf~------tYGGlagrd~ea~a~Gl~e~~-----~~~ 325 (467)
T TIGR02617 259 MLAMSAKKDAMVPMG-GLLCFKDDSFFDVYT-ECRTLCVVQEGFP------TYGGLEGGAMERLAVGLYDGM-----NLD 325 (467)
T ss_pred EEEEEcCCCCCCccc-ceEEecchhHHHHHH-HHHhhcccccCCc------CcCchhHHHHHHHHhhhhhcc-----cHH
Confidence 999999999888888 88888876 2211 0111111111111 113233333333333333222 233
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEc----CCccccCChhhHHHHHHHHhhhcceEe-eecccCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL----PSRLRVMGEDDALRLRGHLRVRFGVEV-PIHYQAPKD 397 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~~~gI~v-~~~~~~~~~ 397 (452)
+.++-....+||.+.|.+. |+.+.. .+ ++-+.+.. |- . .....-+..++-+|..+.||.. ..+....+.
T Consensus 326 yl~~ri~qv~yl~~~L~~~-Gvpi~~-~G--ghav~iDa~~~lph-i-p~~~fpa~al~~~ly~~~GiR~~e~G~~~~~r 399 (467)
T TIGR02617 326 WLAYRINQVQYLVNGLEEI-GVVCQQ-AG--GHAAFVDAGKLLPH-I-PADQFPAHALACELYKVAGIRAVEIGSLLLGR 399 (467)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcEEe-cC--ccEEEEehhhhCCC-C-ChhhCcHHHHHHHHHHHcCcceEeecceeccc
Confidence 4444567788999999887 887766 43 22333321 10 0 0134567788888887778874 112211110
Q ss_pred CCCCCCCCCCCCCCccceEEecccc-cCCHHHHHHHHHHHHHHHhccc
Q 012991 398 DGQPQAGARDKDGIITGYARISHQV-YNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~iRis~~~-~~t~~di~~l~~~l~~~~~~~~ 444 (452)
+. .-... ....-..+|+.+.- .-|.+++|.+++++..+.++..
T Consensus 400 d~--~~~~~--~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~ 443 (467)
T TIGR02617 400 DP--KTGKQ--LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAP 443 (467)
T ss_pred CC--CCCcc--CCCccceeeeccccccccHhHHHHHHHHHHHHHhhhh
Confidence 00 00000 01123579999862 2388999999999999987643
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-11 Score=127.12 Aligned_cols=349 Identities=15% Similarity=0.149 Sum_probs=218.7
Q ss_pred CCCCHHHHHhhhcc---CCC-CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcC-Cchh-hhhhhhHHHHHHHHHHHhHhC
Q 012991 22 RCISEAEIRDEFSH---HQH-GVARINNGSFG-SCPKSVLADQQKWQLKFLQQ-PDDF-YFNSLRKGILESRAAVKDLIN 94 (452)
Q Consensus 22 ~~~~~~~ir~~~~~---~~~-~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~la~~~~ 94 (452)
..++..++.+++.. .+. -.-|++.|.++ ..|..+.+.+.+.-..+..+ |-.. -+.+..+.+.+.+..++++.|
T Consensus 59 ~~~sE~e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtG 138 (954)
T PRK12566 59 AALDEQAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTG 138 (954)
T ss_pred CCCCHHHHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhC
Confidence 34566666665432 222 23477777777 56664536654432211111 1110 124455667889999999999
Q ss_pred CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHH
Q 012991 95 ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEII 174 (452)
Q Consensus 95 ~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 174 (452)
.+ ..+.-+-.++|++-+.++.+.. +. -.+..+|++++..|+.....++-+++..|++++.-
T Consensus 139 m~-vaNASl~D~atA~aEA~~ma~~--~~---~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~~------------- 199 (954)
T PRK12566 139 LD-LANASLLDEATAAAEAMALAKR--VA---KSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVVD------------- 199 (954)
T ss_pred ch-hhhhhhccchhHHHHHHHHHHH--Hh---hcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEEc-------------
Confidence 96 6676777788876665555442 10 01256899999999998888877778888887742
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccc--ccCCccccccccCccEEEEcCc
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAH--AMGSIKIDVKEIGADFYVSNLH 252 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~--~~g~~~~~~~~~~~d~~~~s~~ 252 (452)
++++.+ +.++..|++.+|++ .|.+.++++|.+++|+.|. +++ +++. +++.+ .....+|+|+++.+.+
T Consensus 200 -~~~~~~------~~~~~~v~vq~P~~-~G~i~d~~~i~~~~h~~ga-l~~-~~~d~laL~ll-~~Pge~GADI~vG~~Q 268 (954)
T PRK12566 200 -AVDNLA------AHAVFGALLQYPDT-HGEIRDLRPLIDQLHGQQA-LAC-VAADLLSLLVL-TPPGELGADVVLGSTQ 268 (954)
T ss_pred -chhhcC------CCCEEEEEEECCCC-ceEEccHHHHHHHHHHcCC-EEE-EEeCHHHHhCC-CChhhcCCcEEeeCCC
Confidence 233333 45788999998875 7999999999999999999 644 5443 33333 2345679999988766
Q ss_pred ccC-----cCCCCcEEEEEecCccccCCCCCce---eccC-CC---Cccc----c--cccccccCccccccHHHHH----
Q 012991 253 KWF-----FCPPSVAFLYCRKSILSSDMHHPVV---SHEF-GN---GLPI----E--SAWIGTRDYSAQLVIPSAV---- 310 (452)
Q Consensus 253 K~l-----~g~~G~G~l~~~~~~~~~~l~~~~~---~~~~-~~---~~~~----~--~~~~~~~~~~~~~~~~~al---- 310 (452)
- | +|+++.|++.+++++..+ ++..+ +.+. |. .... + +..-.|.|+....++.+.+
T Consensus 269 ~-fGvp~~~GGP~ag~~a~~~~~~R~--~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y 345 (954)
T PRK12566 269 R-FGVPMGYGGPHAAYFACRDDYKRA--MPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFY 345 (954)
T ss_pred c-CCCCCCCCCCCeeeeeehHHHHhh--CCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 4 3 334447999999888776 33322 1111 11 0000 0 1223555555444433322
Q ss_pred -HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEee
Q 012991 311 -TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVP 389 (452)
Q Consensus 311 -~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~ 389 (452)
.++.. +|++++.+++..++.++.+.|.+ .|+++... .+|-.|.+. .+.++.++.+...+ .||-++
T Consensus 346 ~~~~Gp--~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~----~fF~~~~v~------~~~~~~~~~~~a~~-~~~n~r 411 (954)
T PRK12566 346 AVYHGP--EGLKRIAQRVHRLTAILAAGLEA-KGIKRLNR----HFFDTLTLE------VGGAQAAIIESAEA-ARINLR 411 (954)
T ss_pred HHHhCh--HHHHHHHHHHHHHHHHHHHHHHh-cCCccccC----CccceEEEE------ccCCHHHHHHHHHH-CCCeeE
Confidence 22222 37888899999999999999998 58887654 223333332 11135566666545 488886
Q ss_pred ecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 390 IHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
.. +.+.+.+|+.-.+|.+|++.++.++.
T Consensus 412 ~~--------------------~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 412 IL--------------------GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred Ee--------------------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 32 23579999998899999999999984
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-11 Score=111.99 Aligned_cols=263 Identities=13% Similarity=0.148 Sum_probs=162.6
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.++.-+++.+++.+....+ .+....+...+ .-++.+.+.+..+-...+.|.|.++||+|++.++. ++|++..-.
T Consensus 70 ~Ghanpev~ral~~q~~k~---~hs~~~~~t~e-av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK-~Ark~~~~~- 143 (433)
T KOG1401|consen 70 LGHANPEVARALAEQAKKL---GHSSNGYFTLE-AVELEEVLSAVLGKGSAERVFFCNSGTEANETALK-FARKFTGKK- 143 (433)
T ss_pred cCCCCHHHHHHHHHHHhhh---eeccCccccHH-HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHH-HHHHhhccc-
Confidence 4555666888888777654 22222233333 55677788888865556899999999999999998 555543211
Q ss_pred CCC--CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCC---hHH--HHHHHHHHHhccccCCCceEEEEEeccC
Q 012991 128 HRN--DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLAS---EEE--IINEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 128 ~~g--~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~---~~~--~~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
.+. .+||....+|++-..++...+... ....+.+ |... ... ...++++.++.+ ...+.+|+++...
T Consensus 144 ~~~~~t~~Iaf~nsyHG~tlgals~~~~s---~y~~~~~-p~~p~v~~~~ynd~t~l~k~~~~h---~~~IaAVIvEPiq 216 (433)
T KOG1401|consen 144 HPEKKTKFIAFENSYHGRTLGALSVTGNS---KYGLPFD-PIAPDVVTAEYNDSTALEKLFESH---KGEIAAVIVEPIQ 216 (433)
T ss_pred CCccceeEEEEecCcCCcchhHHHhhccc---ccCCCCC-CCCCceeecccCCHHHHHHHHHhC---CCceEEEEEeccc
Confidence 111 359999999988655554322111 1111100 0000 011 168888888754 3458999999988
Q ss_pred CCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCccc----cccccCccEEEEcCcccCcCCCCcEEEEEecCcc
Q 012991 201 SMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIKI----DVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSIL 271 (452)
Q Consensus 201 n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~~----~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~ 271 (452)
-..|.... +..|.++|+++++ ++|.|+++.. |-... .+-...+|+.+.. |.|.|+-.+|...+++++.
T Consensus 217 GaGG~~p~~peFl~~L~k~C~~~~v-l~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~a--K~L~gGlPigA~~v~~kV~ 293 (433)
T KOG1401|consen 217 GAGGIIPADPEFLIGLRKECDDNGV-LLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVA--KPLGGGLPIGATGVRDKVA 293 (433)
T ss_pred CCCCcccCCHHHHHHHHHHHhhcCc-eEEeehhhhCccccchHHHHHHhCcCCcceeeh--hhccCCceeEEEeehHHHH
Confidence 77777643 5678999999999 8999999863 32211 1222358888877 9887766689999999888
Q ss_pred ccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 272 SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
+. +..+. . +..|+.....-+++.++..-+.++ .-.+..+++....+.|++.+.+.
T Consensus 294 ~~-i~~~~-------~-----l~hg~Tf~gnpLacsa~~~~l~~l--~~~e~~k~vs~~~k~L~~~l~e~ 348 (433)
T KOG1401|consen 294 EM-ISPGD-------H-----LYHGGTFSGNPLACSAGIKVLDEL--KDPETLKNVSKIGKELRKLLDEY 348 (433)
T ss_pred hh-cCCCC-------c-----cccCcccCCChhhhhHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 76 22111 1 111222222333444454444444 44566777777888888887765
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=121.85 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=136.8
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 121 (452)
...+.+-+...+++++++...+..+..- .. .........+.......+.++...+.++++++.+.|+.+++.++
T Consensus 30 ~~t~lG~s~~~~e~iea~~~~~~~~v~L-e~--~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al--- 103 (395)
T COG1921 30 LMTNLGRSLYSPEAIEAMKEAMRAPVEL-ET--DLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNAL--- 103 (395)
T ss_pred eeccCCCccCCHHHHHHHHHHhccccee-ee--ecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhh---
Confidence 3344455666677999988877653211 11 11111223333333333444443468899999999999998876
Q ss_pred cccCCCCCCCEEEEeC-----CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 122 FTEGRFHRNDTVLMLH-----CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 122 ~~~~~~~~g~~Vl~~~-----~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
..+.+|+++. +.++.+... ++..|++++.+.. .+.- ..+++.+| ++++++++
T Consensus 104 ------~~~~EvVis~g~lV~gg~~~v~d~----~~~aG~~l~EvG~------tn~t~~~d~~~AI------ne~ta~ll 161 (395)
T COG1921 104 ------AEGKEVVVSRGELVEGGAFRVPDI----IRLAGAKLVEVGT------TNRTHLKDYELAI------NENTALLL 161 (395)
T ss_pred ------ccCCeEEEEccccccCCCCChhHH----HHHcCCEEEEecc------cCcCCHHHHHHHh------ccCCeeEE
Confidence 4466666652 345555444 4567999999942 1222 78999999 89999988
Q ss_pred EeccCCCCccc--ccHHHHHHHHHHcCCCEEEEecccccCCcc-c---cccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 196 IDHITSMPCVV--IPVRKLVKICRDEGVDQVFVDAAHAMGSIK-I---DVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 196 ~~~~~n~tG~~--~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-~---~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
-.+.+|. |.. .+.++++++||++|+ ++++|.+++..... . ..-+.|+|+|++|++|.|+||. .|+++++++
T Consensus 162 kV~s~~~-~f~~~l~~~~l~~ia~~~~l-pvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkKe 238 (395)
T COG1921 162 KVHSSNY-GFTGMLSEEELVEIAHEKGL-PVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKKE 238 (395)
T ss_pred EEeeccc-cccccccHHHHHHHHHHcCC-CEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc-cceEechHH
Confidence 8877764 443 478899999999999 79999987654321 1 2334589999999999877787 699999999
Q ss_pred cccc
Q 012991 270 ILSS 273 (452)
Q Consensus 270 ~~~~ 273 (452)
++++
T Consensus 239 lI~~ 242 (395)
T COG1921 239 LIEK 242 (395)
T ss_pred HHHH
Confidence 9986
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=120.23 Aligned_cols=321 Identities=20% Similarity=0.262 Sum_probs=204.3
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEe-cChhHHHHHHHHHhhcccccCCCCCC--CEEEEeCCcchhHHHHHHHHHH
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLV-DNATTAAAIVLQQIGRGFTEGRFHRN--DTVLMLHCAFQAVKKSIQAYVT 152 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t-~g~t~a~~~~~~~l~~~~~~~~~~~g--~~Vl~~~~~~~s~~~~~~~~a~ 152 (452)
.+.+++..++++.+++..|.+ .+.|. ++|.++=..-+. ..|.|.+. ...| ...+++-..|..+.... .
T Consensus 578 qGY~~lf~~Le~~Lc~iTG~D---~~s~QPNsGA~GEYaGL~-~IRaY~~~-kge~hRnvClIPvSAHGTNPASA----~ 648 (1001)
T KOG2040|consen 578 QGYQQLFTELEKDLCEITGFD---SFSLQPNSGAQGEYAGLR-VIRAYLES-KGEGHRNVCLIPVSAHGTNPASA----A 648 (1001)
T ss_pred hhHHHHHHHHHHHhheeeccc---ceeecCCCCcccchhhHH-HHHHHHHh-ccCCcceeEEEeecccCCChhhH----H
Confidence 455778889999999999984 66655 444443222222 23333211 1222 35667888888876654 4
Q ss_pred hcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccc-cHHHHHHHHHHcCCCEEEEeccc
Q 012991 153 RAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVI-PVRKLVKICRDEGVDQVFVDAAH 230 (452)
Q Consensus 153 ~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~-~l~~i~~l~~~~~~~~~ivD~a~ 230 (452)
..|.+++.+ ..+..+.+ ..+|++..+++ .++.++++++.|++ .|++. .++++.++.|+||- -+..|||.
T Consensus 649 MagmkvvpV----~~~~~G~id~~dLk~kaekh---~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGG-QVYlDGAN 719 (1001)
T KOG2040|consen 649 MAGMKVVPV----GCDANGNIDMVDLKAKAEKH---KDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGG-QVYLDGAN 719 (1001)
T ss_pred hcCCEEEEe----eccCCCCccHHHHHHHHHHh---hhhhheeEEecccc-cccccccHHHHHHHHHhcCC-EEEecCCC
Confidence 469999988 55677777 88999888875 56788999999987 58875 59999999999999 79999984
Q ss_pred c---cCCccccccccCccEEEEcCcccCcCC-----CCcEEEEEecCccccCC-CCCceeccC-CCCcccc---cccccc
Q 012991 231 A---MGSIKIDVKEIGADFYVSNLHKWFFCP-----PSVAFLYCRKSILSSDM-HHPVVSHEF-GNGLPIE---SAWIGT 297 (452)
Q Consensus 231 ~---~g~~~~~~~~~~~d~~~~s~~K~l~g~-----~G~G~l~~~~~~~~~~l-~~~~~~~~~-~~~~~~~---~~~~~~ 297 (452)
- .|.. ....+|+|+.-..+||+++-| +|.|-+.+++.+... + ..|..+... +...++. ..-.|+
T Consensus 720 MNAqVGlc--~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapf-LP~HpVvs~~~~~~~~~~gsVsaaP~Gs 796 (1001)
T KOG2040|consen 720 MNAQVGLC--RPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF-LPSHPVVSPGRPEDTSPVGSVSAAPWGS 796 (1001)
T ss_pred ccceeccc--CCccccccceeecccceeeecCCCCCCCCCccchhhhcccc-CCCCCccCCCCCCCCCCccceeccCCCc
Confidence 2 2322 122347899999999998544 446777777766653 1 112221110 1111111 000111
Q ss_pred cCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHH
Q 012991 298 RDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLR 377 (452)
Q Consensus 298 ~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (452)
..+.+ .-++.++.|.. +|+...-+-..-+++|+.+.|+....+-..++...+..-+++.+.. .+...++.+.+++
T Consensus 797 a~ILp--ISwaYikmMG~--~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~-fK~~agieavDvA 871 (1001)
T KOG2040|consen 797 ALILP--ISWAYIKMMGS--GGLKDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRP-FKKTAGIEAVDVA 871 (1001)
T ss_pred ceeeh--hHHHHHHHhcc--cccchhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechh-hccccCCcHHHHH
Confidence 11111 12345566664 3777777777889999999999864333333333223333333321 1222467888999
Q ss_pred HHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 378 GHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 378 ~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.|. ++|+..|....+ ..+++-|-+.-..+.+|+|+++++|-.+-
T Consensus 872 KRL~-DYgFHaPTmswP-----------------V~gtLMIEPTESE~k~ElDRfcdAliSIr 916 (1001)
T KOG2040|consen 872 KRLM-DYGFHAPTMSWP-----------------VAGTLMIEPTESEDKAELDRFCDALISIR 916 (1001)
T ss_pred HHHH-hccCCCCccccc-----------------cCCceEeccCccccHHHHHHHHHHHHHHH
Confidence 9995 589998766554 35789998887788999999999986654
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=120.52 Aligned_cols=287 Identities=15% Similarity=0.221 Sum_probs=168.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccc-cC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT-EG 125 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~-~~ 125 (452)
..|...+.+.+++.+.+...... . ......+...++.+.|.+.++.. .+.+.|++||++|++.++... +++. ..
T Consensus 29 ~lGh~~p~i~~ai~~~~~~~~~~--~-~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~Alkla-~~~~~~~ 103 (339)
T PF00202_consen 29 NLGHNHPEIAEAIAEQANKLNYV--S-FSGFTHPEAAELAEKLAELFPGG-LDRVFFANSGSEAVEAALKLA-RQYHNKR 103 (339)
T ss_dssp TT-BT-HHHHHHHHHHHHHCSSC--S-TTTSEEHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHT
T ss_pred ecCCCccccchhHHHHhhhcccc--c-ccceeccchhhhhhhhhhccccc-cceeeeccCchHHHHHHHHHh-hcccccc
Confidence 55677778999999887653211 1 11223455778888999998543 479999999999999999854 3211 11
Q ss_pred CCCCCCEEEEeCCcchhHHHHHHHHH----HhcC-----cEEEEEeCCCCCCCh-HHH-HHHHHHHHhccccCCCceEEE
Q 012991 126 RFHRNDTVLMLHCAFQAVKKSIQAYV----TRAG-----GSVVEVQLPFPLASE-EEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~s~~~~~~~~a----~~~g-----~~v~~~~~~~~~~~~-~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
......+|+....+|++.......+. .+.+ ..+..+|.+.+..++ ... .+.+++.+.+.. .+++.+|
T Consensus 104 ~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iaav 181 (339)
T PF00202_consen 104 AYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALN--ADEIAAV 181 (339)
T ss_dssp HHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHH--GGGEEEE
T ss_pred cccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhc--CCcEEEE
Confidence 12345699999999887543332210 0011 234556543211100 111 333444333211 4678999
Q ss_pred EEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
+++......|...+ +++|.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.+.|+..+|.++
T Consensus 182 ivEPi~g~~G~~~~~~~~l~~l~~lc~~~gi-llI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p~sav~ 258 (339)
T PF00202_consen 182 IVEPIQGEGGMIPPPPEYLRELRELCREHGI-LLIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLPISAVL 258 (339)
T ss_dssp EEESSBTTTTSBEE-TTHHHHHHHHHHHTT--EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSSEEEEE
T ss_pred EEeccccccCccccccchhhehccccccccc-ceecccccccccccCCccceecccccCcccccc--cchhhhhhccccc
Confidence 99998888887764 6899999999999 899999986 33221 22334468999997 9988777789999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-C
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-T 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~ 344 (452)
+++++.+. + .+.. ...++.+ +..+..+..+.++.+++ +.+.+++.++.+++.+.|.++.. .
T Consensus 259 ~~~~i~~~-~-~~~~---------~~~T~~g--~p~~~aaa~~~l~~~~~-----~~~~~~~~~~g~~l~~~L~~l~~~~ 320 (339)
T PF00202_consen 259 GSEEIMEA-F-QPGS---------HGSTFGG--NPLSCAAALATLEILEE-----EDLLERVRELGERLREGLRELAARY 320 (339)
T ss_dssp EEHHHHTT-S-CTTS---------STCTTTT---HHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhcc-c-cccc---------ccccccc--chHhhhhhhhHHHhhcc-----HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99988875 1 1110 0111111 11222333344555553 34567778888888888876532 1
Q ss_pred CcCCCcccccceEEEEc
Q 012991 345 SLGSPPEICAAMVMVGL 361 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~ 361 (452)
.++......+.++.+.+
T Consensus 321 ~~i~~vrg~Gl~~~ie~ 337 (339)
T PF00202_consen 321 PLIGEVRGIGLMIGIEL 337 (339)
T ss_dssp TTEEEEEEETTEEEEEE
T ss_pred CCeEEEeeeCeEEEEEE
Confidence 22222223355555544
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-13 Score=127.50 Aligned_cols=199 Identities=14% Similarity=0.235 Sum_probs=42.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCch-h--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccc
Q 012991 46 GSFGSCPKSVLADQQKWQLKFLQQPDD-F--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF 122 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~ 122 (452)
-+-.+.++++.+++.+....+.. ... . ..++ .-+..+.+.++.+.|++ ..+++++..+|+.+++.++
T Consensus 13 LGRs~l~~~a~~a~~~~a~~Y~n-LE~dl~~G~Rg--~R~~~v~~ll~~ltgAe---aA~VvNnnaAAv~L~l~~l---- 82 (367)
T PF03841_consen 13 LGRSPLSEEAIEAVAEVASGYSN-LEYDLETGKRG--SRYAHVEELLCELTGAE---AALVVNNNAAAVLLALNTL---- 82 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccc--ccccccccccccccccc---ccccccccccccccccccc----
Confidence 33456677788888766544311 111 0 0011 11455777889999884 6677787788999998876
Q ss_pred ccCCCCCCCEEEEeCCcchhHHHHHH--HHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEecc
Q 012991 123 TEGRFHRNDTVLMLHCAFQAVKKSIQ--AYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHI 199 (452)
Q Consensus 123 ~~~~~~~g~~Vl~~~~~~~s~~~~~~--~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~ 199 (452)
..+.+|+++..+-..+...|+ .+.+..|++++++-. . ..- +++++++| +++|++++..|.
T Consensus 83 -----a~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGt----t--N~t~~~Dye~AI------~e~Ta~ll~Vh~ 145 (367)
T PF03841_consen 83 -----AKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGT----T--NRTHLSDYEKAI------TENTAALLKVHT 145 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----cccccccccccccccccccccccccccccccccccccc----c--cccccccccccc------cccccccccccc
Confidence 567899998776554443332 223667899988842 2 222 78999999 899999999887
Q ss_pred CCC--Cccc--ccHHHHHHHHHHcCCCEEEEeccccc-------C--Ccc--ccccccCccEEEEcCcccCcCCCCcEEE
Q 012991 200 TSM--PCVV--IPVRKLVKICRDEGVDQVFVDAAHAM-------G--SIK--IDVKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 200 ~n~--tG~~--~~l~~i~~l~~~~~~~~~ivD~a~~~-------g--~~~--~~~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
+|. .|.. .+++++++++|+|++ ++++|..++. | ..+ .+.-+.|+|++++|+.|.|+||. .|++
T Consensus 146 Sn~~i~GFt~~~~~~el~~la~~~~l-p~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI 223 (367)
T PF03841_consen 146 SNFRIQGFTGEVSLEELAELAKEHGL-PVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGII 223 (367)
T ss_dssp ---------------HHHHHHHHHT---EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEE
T ss_pred cccccccccccccHHHHHHHHhhcCC-cEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEE
Confidence 775 3433 489999999999999 7999976532 1 111 12345689999999999777777 6999
Q ss_pred EEecCcccc
Q 012991 265 YCRKSILSS 273 (452)
Q Consensus 265 ~~~~~~~~~ 273 (452)
+.+++++++
T Consensus 224 ~Gkk~lI~~ 232 (367)
T PF03841_consen 224 VGKKELIEK 232 (367)
T ss_dssp EEEHHHHHH
T ss_pred EeCHHHHHH
Confidence 999999987
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-10 Score=102.61 Aligned_cols=360 Identities=14% Similarity=0.169 Sum_probs=211.4
Q ss_pred hhccCCCCeEEec----cCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecCh
Q 012991 32 EFSHHQHGVARIN----NGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNA 107 (452)
Q Consensus 32 ~~~~~~~~~~~l~----~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~ 107 (452)
.|.....+.-||+ .+-.+...++|.++....+.....+. + .-.+++.+-+++..+.+=++ +.++|++||
T Consensus 39 QYmfDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat~~tN~-R---Flhd~lv~cA~~l~stlPeL---svc~F~NSG 111 (452)
T KOG1403|consen 39 QYMFDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMATISTNN-R---FLHDELVQCARTLTSTLPEL---SVCFFVNSG 111 (452)
T ss_pred ceeeccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhHhcccc-h---hhHHHHHHHHHHHhhcCCCc---eEEEEecCC
Confidence 3554445555553 22345556668888777766543321 1 12244555555555555443 688999999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc---C---cEEEEEe---CCC-----------CC
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA---G---GSVVEVQ---LPF-----------PL 167 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~---g---~~v~~~~---~~~-----------~~ 167 (452)
++|+.++++ |+|.| .....|++.+..|++.......++... | .++.++. .++ +.
T Consensus 112 SEANDLALR-LAR~f-----tkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~ 185 (452)
T KOG1403|consen 112 SEANDLALR-LARNF-----TKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPD 185 (452)
T ss_pred chhhHHHHH-HHHhh-----cccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCc
Confidence 999999998 55543 555667777777777655543332111 1 1222222 110 11
Q ss_pred CChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc-----
Q 012991 168 ASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----- 236 (452)
Q Consensus 168 ~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----- 236 (452)
.+.+.. .+.+++.++..-..+...++++.++..+--|.++| .+.+++..+.+|- ++|+|+++- +|-+.
T Consensus 186 a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGG-v~IaDEVQvGFGRvG~hyWa 264 (452)
T KOG1403|consen 186 ADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGG-VCIADEVQVGFGRVGSHYWA 264 (452)
T ss_pred ccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCC-eEEeehhhhcccccchhhhh
Confidence 112233 66777766543333556778888888888999987 5678888899998 799999873 44332
Q ss_pred ccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh
Q 012991 237 IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF 316 (452)
Q Consensus 237 ~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 316 (452)
+.....-+|+++.. |-++.+..++++...+++.+. + ... +..+-.++.|+|.. .+.++..+...
T Consensus 265 fq~y~fiPDIVtmg--KpmGNGhPVa~VattkeIA~A-f-~at-------gv~YFNTyGGnPVs-----CAv~laVm~v~ 328 (452)
T KOG1403|consen 265 FQTYNFIPDIVTMG--KPMGNGHPVAAVATTKEIAQA-F-HAT-------GVEYFNTYGGNPVS-----CAVGLAVMRVC 328 (452)
T ss_pred hhhhccccchheec--ccCCCCCeeeEEeccHHHHHH-h-ccc-------cceehhccCCCchh-----HHHHHHHHHHH
Confidence 22223457888887 776666668998888888775 2 110 11111112233332 23345555543
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCCcccccceEEEEcCC-c-cccCChhhHHHHHHHHhhhcceEeeeccc
Q 012991 317 EGGIDGIMQRNHEQALKMARMLANAWG-TSLGSPPEICAAMVMVGLPS-R-LRVMGEDDALRLRGHLRVRFGVEVPIHYQ 393 (452)
Q Consensus 317 ~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~L~~~~gI~v~~~~~ 393 (452)
.-+.+.++.+....+|...|.++.. .+.++.....+-|+-+.+-. . ....+...+..+...|.+.++|.+...
T Consensus 329 --e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD-- 404 (452)
T KOG1403|consen 329 --EDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD-- 404 (452)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC--
Confidence 4567788888888888888876532 34455444445555555421 1 111222345567788888888888421
Q ss_pred CCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 394 APKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+...+.+.|-+..--++++.+.++..|.+++.
T Consensus 405 ----------------GPh~NilKiKPPmCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 405 ----------------GPHRNILKIKPPMCFNEENADEFVLGLDEILT 436 (452)
T ss_pred ----------------CCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence 34467888876433367777777777777663
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-09 Score=100.23 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHhHhCCCCCCcEEEe--cChhHHHHHHHHHhhcccccCCCCCCCEEEEeC-CcchhHHHHHHHH-----
Q 012991 79 RKGILESRAAVKDLINADDVGEISLV--DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLH-CAFQAVKKSIQAY----- 150 (452)
Q Consensus 79 ~~~~~~~~~~la~~~~~~~~~~i~~t--~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~~~~----- 150 (452)
+.+.+.+.+-.|+.|+++ +.++=. .|||+|+.+++.++ ++|||+++... .-|......+..-
T Consensus 53 D~GRd~le~iyA~vfgaE--~ALVRpq~vSGTHAi~~~Lfg~--------LrpGD~ll~~tG~PYDTL~~VIG~~g~~~G 122 (403)
T PF06838_consen 53 DIGRDKLERIYADVFGAE--DALVRPQFVSGTHAIALALFGV--------LRPGDELLSITGKPYDTLEEVIGIRGNGPG 122 (403)
T ss_dssp -HHHHHHHHHHHHHCT-S--EEEEETTS-SHHHHHHHHHHHH----------TT-EEEESSSS--CCHHHHHTSSSSSSS
T ss_pred CccHHHHHHHHHHHhCch--hhhhcccccchHHHHHHHHHhc--------CCCCCeEEEcCCCchhhHHHHhCCCCCCCC
Confidence 557788999999999995 444432 58999999999987 79999999653 3454443333210
Q ss_pred -HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc----c---cHHHHHHHHHHc--
Q 012991 151 -VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV----I---PVRKLVKICRDE-- 219 (452)
Q Consensus 151 -a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~----~---~l~~i~~l~~~~-- 219 (452)
-...|+++..++ ..+++.+ .+.+++++ ++++++|++.-- .|.- + +++++.+++|+.
T Consensus 123 SL~e~Gi~Y~~v~----L~~dg~~D~~~i~~~~------~~~tk~v~IQRS---rGYs~R~sl~i~~I~~~i~~vk~~~p 189 (403)
T PF06838_consen 123 SLKEFGIKYREVP----LTEDGTIDWEAIKKAL------KPNTKMVLIQRS---RGYSWRPSLTIEEIKEIIKFVKEINP 189 (403)
T ss_dssp STGGGT-EEEE------B-TTSSB-HHHHHHHH------HTTEEEEEEE-S----TTSSS----HHHHHHHHHHHHHH-T
T ss_pred ChHHhCceeEEEe----ecCCCCcCHHHHHHhh------ccCceEEEEecC---CCCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 022378999994 4555555 89999999 578999999643 3432 2 345555555654
Q ss_pred CCCEEEEecccccCCccccccccCccEEEEcCcccCcC---CCCcEEEEEecCcccc
Q 012991 220 GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFC---PPSVAFLYCRKSILSS 273 (452)
Q Consensus 220 ~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g---~~G~G~l~~~~~~~~~ 273 (452)
++ +++||.+++-..-.......|+|++..|+-|..+| |.| |+++.++++++.
T Consensus 190 ~~-iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptG-GYIaGr~~lVe~ 244 (403)
T PF06838_consen 190 DV-IIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTG-GYIAGRKDLVER 244 (403)
T ss_dssp TS-EEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS--EEEEESHHHHHH
T ss_pred Ce-EEEEeCCcceeccccCccccchhheeccceeCCCCCccCcC-CEEechHHHHHH
Confidence 68 89999999987777777788999999999998765 454 899999999986
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-07 Score=87.10 Aligned_cols=364 Identities=15% Similarity=0.117 Sum_probs=204.6
Q ss_pred eccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccc
Q 012991 43 INNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF 122 (452)
Q Consensus 43 l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~ 122 (452)
|.-.+++.+....+.+|-.--+.+ .-+..+..+..++.+.||.. .++-|.-|-.|=++....+.+.
T Consensus 52 LTDSGTgams~~qwaamm~GDEAY----------agsrs~~~L~~avkdifGfq---~~iPthQGRgAE~Il~~i~ik~- 117 (471)
T COG3033 52 LTDSGTGAMTDKQWAAMMRGDEAY----------AGSRSYYALADAVKDIFGFQ---YTIPTHQGRGAENILIPILIKK- 117 (471)
T ss_pred eccCCcccccHHHHHHHhccchhh----------cccccHHHHHHHHHHhcCce---eeeeccCCccHHHHHHHHHhhh-
Confidence 344456666665665554322211 11222566788899999983 6666766666655555544331
Q ss_pred ccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh------HHH-HHHHHHHHhccccCCCceEEEE
Q 012991 123 TEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE------EEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 123 ~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~------~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
+...+|.+.+.++..|.-...+- ....|+.++-+.++...+.+ +.+ ++.|++.|++.. .+++..|+
T Consensus 118 --~~~~pg~~~~~~sN~~FdTTr~h---~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG--~~nvp~I~ 190 (471)
T COG3033 118 --GEQEPGSKMVAFSNYHFDTTRGH---IQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVG--ADNVPYIV 190 (471)
T ss_pred --ccccCCccccccccceecchhHH---HHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhC--cccCcEEE
Confidence 24567777777777776655444 34568777777664332222 445 899999997542 22343443
Q ss_pred Ee-ccCCCCccccc---HHHHHHHHHHcCCCEEEEeccccc-----------CCcccccccc------CccEEEEcCccc
Q 012991 196 ID-HITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAM-----------GSIKIDVKEI------GADFYVSNLHKW 254 (452)
Q Consensus 196 ~~-~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~-----------g~~~~~~~~~------~~d~~~~s~~K~ 254 (452)
.+ ..|+..|.-.+ ++++.+||++|++ +++.|++-.. |.....+... .+|-++.|.-|=
T Consensus 191 ~tiT~NsagGQpVSm~n~r~v~~ia~ky~i-pvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD 269 (471)
T COG3033 191 LTITNNSAGGQPVSMANMKAVYEIAKKYDI-PVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKD 269 (471)
T ss_pred EEEeccccCCCcchHHhHHHHHHHHHHcCC-cEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeecccc
Confidence 33 33445666544 6789999999999 7999976321 1112221111 478899999996
Q ss_pred CcCCCCcEEEEEecCcc----ccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 255 FFCPPSVAFLYCRKSIL----SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 255 l~g~~G~G~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
-...-| |+++.+++-. .. . .....-+.|... .|......+-+++.++..-. ..+- .++-.+.
T Consensus 270 ~lvnmG-Gfl~~~D~~~fDvy~~-~-~~~~V~~eG~~t------YGgl~GrdmealAvGL~e~~----~~~y-l~~Rv~Q 335 (471)
T COG3033 270 GLVNMG-GFLCFKDDSFFDVYEE-C-RTLVVVQEGFPT------YGGLAGRDMEALAVGLREGV----NFDY-LAHRVAQ 335 (471)
T ss_pred ceeccc-cEEEecCccHHHHHHH-H-HhheEeeccccc------cCcccchhHHHHHHHHHHhc----CcHH-HHHHHHH
Confidence 555665 8999987732 21 1 111111111110 12233333333444443322 2333 3444677
Q ss_pred HHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc--cCChhhHHHHHHHHhhhcceEeee-cccCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR--VMGEDDALRLRGHLRVRFGVEVPI-HYQAPKDDGQPQAGARD 407 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~~-~~~~~~~~~~~~~~~~~ 407 (452)
.+||.+.|.+. |+++..|.+. +-+.+...+-+- ..+...++.++-.|..+.||...- +....+.+ ..-..+
T Consensus 336 v~YL~~~l~~~-GVpi~~paGG--Havfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd--~ktg~q- 409 (471)
T COG3033 336 VQYLADGLEEA-GVPIVQPAGG--HAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRD--PKTGKQ- 409 (471)
T ss_pred HHHHHHHHHhc-CCeeEecCCC--ceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccC--CCcccc-
Confidence 89999999988 8888777663 333333211000 012456777888887778998632 21111100 000000
Q ss_pred CCCCccceEEeccccc-CCHHHHHHHHHHHHHHHhcccccccc
Q 012991 408 KDGIITGYARISHQVY-NTLEDYEKFRDAVILLVEEGQVCQML 449 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~~~~~~~~ 449 (452)
....-..+|+.+.-. -|.+++|.++++++++.++++.-+-|
T Consensus 410 -~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~~ikgL 451 (471)
T COG3033 410 -HPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAEDIKGL 451 (471)
T ss_pred -CCCchheeeEeccccccchhHHHHHHHHHHHHHhccccCCCc
Confidence 012235799998632 37899999999999999987644333
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-08 Score=90.87 Aligned_cols=273 Identities=12% Similarity=0.056 Sum_probs=139.3
Q ss_pred CCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHH
Q 012991 98 VGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEF 177 (452)
Q Consensus 98 ~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l 177 (452)
.-.|+|++|+|+.++.++.+|.... ..-.+.-.|+...|-|++.......+ + ....++.. |. ..+
T Consensus 66 gr~IV~GtGsTQL~~AalyALSp~~--~~~~~p~~VVa~aPYY~~Y~~qt~~f-~--s~~y~w~G-----da-----~~~ 130 (363)
T PF04864_consen 66 GRYIVFGTGSTQLFNAALYALSPNA--SPSSSPASVVAAAPYYSSYPEQTDFF-D--SRLYKWAG-----DA-----SNF 130 (363)
T ss_dssp TSEEEEECHHHHHHHHHHHHHCHHT---TTSSSEEEEE-SS--CHHHHHCCCT----BTTEEEEE-----EC-----CCG
T ss_pred CcEEEEcCCHHHHHHHHHHhcCCCC--CCCCCCceeEecCCCccchHHHHHhc-c--ccCccccc-----cH-----Hhh
Confidence 4689999999999999999994310 00112237888888888764443332 1 11223321 10 000
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-cccccccCccEEEEcCcccCc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-KIDVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~~~~~~~~d~~~~s~~K~l~ 256 (452)
. .. .+..+-+=++++||||.|.+-. .+++.-+. .+|.|-|+..++. |+.. ..+-|++.++.+| +.
T Consensus 131 ~---~~---~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~-k~I~D~AYYWPhyTpI~~-~aD~DiMLFT~SK-~T 196 (363)
T PF04864_consen 131 K---NS---DNPSPYIELVTSPNNPDGQLRE-----AVLNGSSG-KVIHDLAYYWPHYTPITA-PADHDIMLFTLSK-LT 196 (363)
T ss_dssp T---T----S-CCGEEEEEESS-TTT-----------SSTTTEE-EEEEE-TT-STTTS---S--B--SEEEEEHHH-HC
T ss_pred c---cC---CCCCCeEEEEeCCCCCcccccc-----hhcCCCCc-ceeeeeeeecccccccCC-CCCCceEEEEEec-cc
Confidence 0 00 0345667799999999998721 12244456 6899999998875 3332 3356999999999 47
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhc--C--------HHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEG--G--------IDGIM 324 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--g--------~~~~~ 324 (452)
|=.| +|+.+++++.+.+ .+..+. ...|.-.. .-+...+++.+..+.+ + ++--+
T Consensus 197 GHAGSR~GWAlVKD~~Va~-kM~~y~-------------~lnTiGvS-~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~ 261 (363)
T PF04864_consen 197 GHAGSRFGWALVKDEEVAK-KMTKYM-------------ELNTIGVS-RDSQLRALKILKVVLDGYGTEKGTEDIFHFGY 261 (363)
T ss_dssp S-GGG-EEEEEES-HHHHH-HHHHHH-------------HHHCSS---HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHH
T ss_pred CccccccceeeecCHHHHH-HHHHHH-------------HHhcccCc-HHHHHHHHHHHHHHHhcccCCCCccchHHHHH
Confidence 6666 8999998876654 111121 01111111 1111123333332100 1 11122
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcC--CCc---------ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeeccc
Q 012991 325 QRNHEQALKMARMLANAWGTSLG--SPP---------EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ 393 (452)
Q Consensus 325 ~~~~~~~~~l~~~L~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~ 393 (452)
+..+++...|.+.+.+...+.+. .|+ .....+.|++... . ...+-.+.|+ +.||.-+.+..
T Consensus 262 ~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~------e-ed~DC~~~l~-~~~I~tr~G~~ 333 (363)
T PF04864_consen 262 STMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCER------E-EDEDCYAVLR-EAKIITRSGVL 333 (363)
T ss_dssp HHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESS------C-GGSSHHHHHH-CTTEEEEEGGG
T ss_pred HHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCC------c-ccccHHHHHH-hCCcccCCCCc
Confidence 33344445555555443223332 111 1235677877641 1 1234556665 46999998887
Q ss_pred CCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 394 APKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+. ....++|+|+-- +++|.+.|++.|..+
T Consensus 334 fg---------------a~~ryVRlSml~--~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 334 FG---------------ADSRYVRLSMLK--RDDDFDQLLERLSKL 362 (363)
T ss_dssp GT---------------S-TTEEEEESSS---HHHHHHHHHHHHCC
T ss_pred cC---------------CCCCeEEEeccC--CHHHHHHHHHHHHhh
Confidence 73 456799999974 889999999999764
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-06 Score=79.03 Aligned_cols=293 Identities=15% Similarity=0.173 Sum_probs=166.4
Q ss_pred HHHHHHHHHHhH-hCCCC----CCcE--EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 81 GILESRAAVKDL-INADD----VGEI--SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 81 ~~~~~~~~la~~-~~~~~----~~~i--~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
+....++..+++ +|.+. .+.+ +.+-|||.|+.+.+.-+.+ +-+...|.++.|.|.++...| +.
T Consensus 75 Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~------~~~~~~VY~SnPTW~nH~~if----~~ 144 (410)
T KOG1412|consen 75 GLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLAT------FYNKNTVYVSNPTWENHHAIF----EK 144 (410)
T ss_pred CchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHH------hcccceeEecCCchhHHHHHH----HH
Confidence 345566666664 44331 2332 5567899999999887754 234567999999999876666 44
Q ss_pred cC-cEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec-cCCCCccccc---HHHHHHHHHHcCCCEEEEe
Q 012991 154 AG-GSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH-ITSMPCVVIP---VRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 154 ~g-~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~-~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD 227 (452)
.| .++...+. |..+. ..+ ++.+...|+.. .+. .++++.. .+||||.=.. ..+|++..++.+. +.+.|
T Consensus 145 aGf~tv~~Y~y-Wd~~~-k~~d~e~~Lsdl~~A---Pe~-si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~l-f~fFD 217 (410)
T KOG1412|consen 145 AGFTTVATYPY-WDAEN-KCVDLEGFLSDLESA---PEG-SIIILHACAHNPTGMDPTREQWKQIADVIKSKNL-FPFFD 217 (410)
T ss_pred cCCceeeeeee-ecCCC-ceecHHHHHHHHhhC---CCC-cEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCc-eeeee
Confidence 57 34544532 22221 223 67777777542 222 3444444 4999997543 4578888888898 78999
Q ss_pred ccc-ccCCcccccccc--------Cc-cEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCccccc
Q 012991 228 AAH-AMGSIKIDVKEI--------GA-DFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIES 292 (452)
Q Consensus 228 ~a~-~~g~~~~~~~~~--------~~-d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~ 292 (452)
-|+ ++..-+++.+.| +. -|++-||.|- +|.++ +|.+.+ ++..+.. +..... . ..+
T Consensus 218 iAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKN-fGlYneRvGnltvv~~n~a~i~~-v~SQl~-------l-viR 287 (410)
T KOG1412|consen 218 IAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKN-FGLYNERVGNLTVVVNNPAVIAG-VKSQLT-------L-VIR 287 (410)
T ss_pred hhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhh-cccccccccceEEEecChhHHHH-HHHHHH-------H-HHh
Confidence 764 433333433332 33 3566699996 77777 664433 2333222 100000 0 000
Q ss_pred ccccccCccccccHHHH---H---HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc--C-CC-cCCCcccccceEEEEcC
Q 012991 293 AWIGTRDYSAQLVIPSA---V---TFVSRFEGGIDGIMQRNHEQALKMARMLANAW--G-TS-LGSPPEICAAMVMVGLP 362 (452)
Q Consensus 293 ~~~~~~~~~~~~~~~~a---l---~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~--~-~~-~~~~~~~~~~~~~~~~~ 362 (452)
++-+..+.++...+ + +..+++...++.+-.|+++++..|++.|..+. | |. +. +..+++.+
T Consensus 288 ---~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~----~QiGMFSy--- 357 (410)
T KOG1412|consen 288 ---SNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHIT----QQIGMFSY--- 357 (410)
T ss_pred ---hccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----hhccceee---
Confidence 11111122222221 1 12222222467888889999999999998762 2 11 11 22456555
Q ss_pred CccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 363 SRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 363 ~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++.++.++ +.|.+++.|++- ..| ||+++..| ...+|.+.+++.+.+..
T Consensus 358 ------TGLtp~qV-~~li~~h~vyLl----------------------~~G--RInisGLN-~~NveyVAkAIde~Vr~ 405 (410)
T KOG1412|consen 358 ------TGLTPAQV-DHLIENHKVYLL----------------------SDG--RINISGLN-MKNVEYVAKAIDETVRA 405 (410)
T ss_pred ------cCCCHHHH-HHHHHhceEEEe----------------------cCC--cEeeeccc-cccHHHHHHHHHHHHHh
Confidence 46777666 555566899873 223 77776654 56688888888888764
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=92.55 Aligned_cols=292 Identities=17% Similarity=0.194 Sum_probs=183.9
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEV 161 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~ 161 (452)
+...+..++++.|.+ ..+.-+---||+|-+.++.+. ...++.+++++...|+.....+.-.++..|+++...
T Consensus 165 llNyQTmi~dlTGL~-~aNASLLDEgTAaaEAm~l~~-------~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~ 236 (1001)
T KOG2040|consen 165 LLNYQTMITDLTGLP-MANASLLDEGTAAAEAMALCN-------RINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS 236 (1001)
T ss_pred HhhhHHhhhhccCCc-ccchhhhccchhHHHHHHHHH-------hhcccceEEecCCCCcchhhhhhccccccceeEEec
Confidence 445678899999997 667766666776666666654 346677899999999988777765455555554433
Q ss_pred eCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecc-cccCCcccccc
Q 012991 162 QLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAA-HAMGSIKIDVK 240 (452)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a-~~~g~~~~~~~ 240 (452)
++ +++... .++...|++..|.+ .|.+.|..++++.+++.+. ++++-.- -++ .+-....
T Consensus 237 ~~--------------~~~~~s----~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~s-~vv~atDLLaL-tiLrpPg 295 (1001)
T KOG2040|consen 237 DI--------------KEADYS----SKDVSGVLVQYPDT-EGSVLDFDELVELAHANGS-LVVMATDLLAL-TILRPPG 295 (1001)
T ss_pred CH--------------HHhhcc----ccceeEEEEEcCCC-CCcccCHHHHHHHhhccCc-eEEEeehhhHH-HccCChh
Confidence 11 111111 45678899998876 6999999999999999988 5554211 111 1112344
Q ss_pred ccCccEEEEcCcccCcCCCC-----cEEEEEecCccccCCCCCce---eccC-CCCc-------ccc--cccccccCccc
Q 012991 241 EIGADFYVSNLHKWFFCPPS-----VAFLYCRKSILSSDMHHPVV---SHEF-GNGL-------PIE--SAWIGTRDYSA 302 (452)
Q Consensus 241 ~~~~d~~~~s~~K~l~g~~G-----~G~l~~~~~~~~~~l~~~~~---~~~~-~~~~-------~~~--~~~~~~~~~~~ 302 (452)
.+|+|++++|.+. ++-|-| .||+.++.++.+. ++... ..+. |... ..+ +..-.|.++..
T Consensus 296 efGaDIavGSsQR-FGVPlGYGGPHAaFfAv~~~l~R~--mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICT 372 (1001)
T KOG2040|consen 296 EFGADIAVGSSQR-FGVPLGYGGPHAAFFAVSESLVRM--MPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICT 372 (1001)
T ss_pred hcCceeeeccccc-cCccccCCCchHHHHHHHHHHHhh--CCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhH
Confidence 5689999999998 565544 4566666666554 33322 1111 1100 000 01124555555
Q ss_pred cccHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHH
Q 012991 303 QLVIPSAVTFVSRF---EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGH 379 (452)
Q Consensus 303 ~~~~~~al~~~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (452)
..++.+-+..+-.+ ..|++.+.+++...+..|..+|... |-++... .+|=.+++. -+.+.+++.+.
T Consensus 373 AQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k----~fFDTLkI~------~~~s~~~~l~r 441 (1001)
T KOG2040|consen 373 AQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHK----PFFDTLKIR------CGCSAEEVLDR 441 (1001)
T ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhccc----cccceEEEE------ecCcHHHHHHH
Confidence 44444444333221 2489999999999999999999876 5555443 223222221 13367778777
Q ss_pred HhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 380 LRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 380 L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
..++ +|-.+. ...+.+-+++--.++.+||+.++.++.
T Consensus 442 A~~~-~iNlr~--------------------~ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 442 AAKR-QINLRL--------------------VEDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred HHhh-cCceEE--------------------eecCceEEeecccccHHHHHHHHHHHc
Confidence 6564 776652 334688899988889999999998865
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-06 Score=79.88 Aligned_cols=307 Identities=14% Similarity=0.127 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHh-hccccc----------------CCCCCCC---EEEEeCC
Q 012991 79 RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI-GRGFTE----------------GRFHRND---TVLMLHC 138 (452)
Q Consensus 79 ~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l-~~~~~~----------------~~~~~g~---~Vl~~~~ 138 (452)
.+..+.+++.+...-.- ....|...-+|+-|++.++.+. .|...+ ....||. -|+....
T Consensus 122 kd~~~~l~~~ll~~APK-G~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aPg~P~lsvlsF~g 200 (484)
T KOG1405|consen 122 KDFAEKLRQSLLSIAPK-GQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAPGAPDLSVLSFKG 200 (484)
T ss_pred hhHHHHHHHHHHhhCcc-hHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCCCCceeeeeecc
Confidence 44556666666665433 2356666667777888877755 222110 0123332 4666677
Q ss_pred cchhHHHHHHHHHHhcCcEEEEEeC---CCCCCCh-----------------HH-HHHHHHHHHhccccCCCceEEEEEe
Q 012991 139 AFQAVKKSIQAYVTRAGGSVVEVQL---PFPLASE-----------------EE-IINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 139 ~~~s~~~~~~~~a~~~g~~v~~~~~---~~~~~~~-----------------~~-~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
+|++- .+..++......+..+++ +||..+. +. .++++|+.|.+.........+++++
T Consensus 201 aFHGR--~~g~lstT~SKpIHKldiPaFdWPiA~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvE 278 (484)
T KOG1405|consen 201 AFHGR--TFGSLSTTHSKPIHKLDIPAFDWPIAPFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVE 278 (484)
T ss_pred ccccc--cccccccccCccccccCCCCCCCCCCCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEee
Confidence 77653 333333333334444443 2332211 12 2677777777654333456889999
Q ss_pred ccCCCCcccc----cHHHHHHHHHHcCCCEEEEecccccCC-c-------cccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 198 HITSMPCVVI----PVRKLVKICRDEGVDQVFVDAAHAMGS-I-------KIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 198 ~~~n~tG~~~----~l~~i~~l~~~~~~~~~ivD~a~~~g~-~-------~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
-+++.-|.-. =+..+.++|++|++ .+|||++|..|. . ..++.. .+|++++| |-+ ..| | .+
T Consensus 279 PIQsEGGDnhaSp~Ff~kLrdi~~Kh~v-~fivDEVQTGgGaTGk~WaHehw~l~~-PpD~vTFS--KK~--q~g-G-ff 350 (484)
T KOG1405|consen 279 PIQSEGGDNHASPDFFRKLRDITKKHGV-AFIVDEVQTGGGATGKFWAHEHWNLDS-PPDVVTFS--KKF--QTG-G-FF 350 (484)
T ss_pred chhccCCCccCCHHHHHHHHHHHHhcCe-EEEeeeeecCCCccCceeeehhcCCCC-Cccceehh--hhh--hcC-c-cc
Confidence 8888777754 26789999999999 899999986542 2 122222 57999887 543 232 4 34
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-C
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-T 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~ 344 (452)
.+.+++-. .||. .-.+|+|-|.-.. -+..+++.+. .+.+.+.+....++|.+.|.++.. .
T Consensus 351 h~~~frpn---~pYr---------ifNTWmGdP~k~l--ll~~vv~~I~-----~~~Ll~n~~~vG~~l~~gL~~Lq~~~ 411 (484)
T KOG1405|consen 351 HDEEFRPN---EPYR---------IFNTWMGDPSKNL--LLEEVVQEIK-----REDLLNNVAHVGKALLKGLLELQAKY 411 (484)
T ss_pred cCcccCCC---chHH---------HhhhhcCChHHHH--HHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55555543 4442 1223455444322 2233344333 466777788888888888876521 0
Q ss_pred -CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 345 -SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 345 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
.....-..++.|+.+..| ++.-.+.+...++- .|+.+. + =+...||+-++..
T Consensus 412 p~~~~~~RGrGTF~a~d~p------s~~~Rdk~i~~~~~-nGv~~G-G-------------------Cg~~siRfRPsLv 464 (484)
T KOG1405|consen 412 PGKINNLRGRGTFIAWDCP------SGSIRDKLILIARL-NGVNLG-G-------------------CGDKSIRFRPSLV 464 (484)
T ss_pred chhhhcccccceEEEEeCC------ChHHHHHHHHHHHH-cCceec-c-------------------cccceeeecccee
Confidence 111122235888888887 34444567777755 488873 1 1235688887766
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 012991 424 NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~ 442 (452)
-++.+.+.+++.+.+++..
T Consensus 465 f~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 465 FRKHHADIFLDIFDKILAG 483 (484)
T ss_pred ehhhhHHHHHHHHHHHhcc
Confidence 6888899999999998753
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-07 Score=85.17 Aligned_cols=332 Identities=13% Similarity=0.114 Sum_probs=188.5
Q ss_pred CCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH-hCCCC----CCcEE--Ee
Q 012991 38 HGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL-INADD----VGEIS--LV 104 (452)
Q Consensus 38 ~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~~----~~~i~--~t 104 (452)
..-++|..|.+ ....++|+++-++.... ..+. .|-+-.+..+..+..+++ +|... ...++ .+
T Consensus 52 ~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~-~ldK----EYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~ 126 (427)
T KOG1411|consen 52 PKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASL-SLDK----EYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQT 126 (427)
T ss_pred cceeeecccceecCCCCeeeeHHHHHHHHHHhhh-cccc----hhccccchHHHHHHHHHHhhcCCchhhhccceeEEEe
Confidence 34556655543 24455688877766542 1111 233344566666666665 34321 23444 35
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhcc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKG 184 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~ 184 (452)
-|||.|+...+.-+.+ +-++..|.+++|+|..+...+.. .|..+..+...++.. .+...+.+.+.+.+.
T Consensus 127 lSGTGaLriga~Fl~~------f~~~~~I~ip~PTWgNh~~if~~----ag~~~~~yrYyd~~t-~gld~~g~ledl~~~ 195 (427)
T KOG1411|consen 127 LSGTGALRVGAEFLAR------FYPSRDIYIPDPTWGNHKNIFKD----AGLPVKFYRYYDPKT-RGLDFKGMLEDLGEA 195 (427)
T ss_pred ccCcchhhHHHHHHHh------hccccceeecCCcccccCccccc----cCcceeeeeeccccc-cccchHHHHHHHhcC
Confidence 5899998888876653 45688999999999887777744 588887776543322 222244444444322
Q ss_pred ccCCCceEEEEEeccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccc---cCCccccccc------cCcc-EEEEcC
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHA---MGSIKIDVKE------IGAD-FYVSNL 251 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~---~g~~~~~~~~------~~~d-~~~~s~ 251 (452)
.+.--+++-...+||||+=. ..++|.++.++.+. +-+.|.|+. .|....|... .+-+ +++-|+
T Consensus 196 ---p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~-~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSy 271 (427)
T KOG1411|consen 196 ---PEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNL-LPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSY 271 (427)
T ss_pred ---CCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccc-cchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhh
Confidence 23334556666799999753 36688999999998 789998752 2333333221 1334 455599
Q ss_pred cccCcCCCC--cEEEE--Eec-Ccccc------CCCCCceeccCCCCcccccccccccCccccccHHHHH---HHHHHhh
Q 012991 252 HKWFFCPPS--VAFLY--CRK-SILSS------DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV---TFVSRFE 317 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~--~~~-~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al---~~~~~~~ 317 (452)
.|- .|.+| +|.+- +++ +...+ -+..|.. ++|+..........+ +....+.
T Consensus 272 AKN-MGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmY---------------SnPP~hGArIv~~Il~d~~l~~~W~ 335 (427)
T KOG1411|consen 272 AKN-MGLYGERVGALSVVCKDADEAKRVESQLKILIRPMY---------------SNPPLHGARIVATILSDPDLKNQWL 335 (427)
T ss_pred hhh-cchhhhccceeEEEecCHHHHHHHHHHHHHHhcccc---------------cCCCccchhhhhhccCChHHHHHHH
Confidence 996 78877 55442 222 22221 1122221 222222211111111 1111122
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 318 GGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 318 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
+..+.+.+|+...++.|.+.|... +......- ...-++++| ++.+++++ +.|.+++.|++.
T Consensus 336 ~evk~MadRi~~mR~~L~d~L~~~-gs~~~W~hI~~QIGMF~f---------Tgl~peQv-~~l~ke~~iYmT------- 397 (427)
T KOG1411|consen 336 GEVKGMADRIISMRQQLFDALEKE-GSPGNWSHITKQIGMFCF---------TGLNPEQV-DWLTKEYHIYLT------- 397 (427)
T ss_pred HHHHHHHHhhhhhHHHHhHHhhcC-CCCccHHHHHHhhheeee---------cCCCHHHH-HHHHhhheeeec-------
Confidence 246888899999999999998764 32211100 012456666 46677655 666677888873
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+--|||+... +...+..+.++|..+.+
T Consensus 398 -----------------~dGRiS~aG~-ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 398 -----------------KDGRISMAGL-SSSNVPYLADAIHAVTK 424 (427)
T ss_pred -----------------cCceEeeccc-cccCCcccchhhHhHhc
Confidence 1238888765 45568888888877654
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.8e-06 Score=75.92 Aligned_cols=173 Identities=17% Similarity=0.218 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEE--EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCC-cchhHHHHHHHH------
Q 012991 80 KGILESRAAVKDLINADDVGEIS--LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHC-AFQAVKKSIQAY------ 150 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~--~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~-~~~s~~~~~~~~------ 150 (452)
.+.+.+.+-.|+.||++ +.++ ---|||.|+..++.++ ++|||+.+.... .|......+..-
T Consensus 65 ~GRdtLe~vyA~vf~aE--~a~VRpq~isGTHAI~~aLfg~--------LRpgDell~i~G~PYDTLeevIG~rg~~~gS 134 (416)
T COG4100 65 LGRDTLERVYAQVFGAE--AALVRPQIISGTHAIACALFGI--------LRPGDELLYITGSPYDTLEEVIGLRGEGQGS 134 (416)
T ss_pred cchhHHHHHHHHHhccc--cceeeeeeecchhHHHHHHHhc--------cCCCCeEEEecCCcchhHHHHhccCCCCccc
Confidence 34566778899999996 4333 2357889999999876 799999887533 333332222110
Q ss_pred HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC----CCCcccccHHHHHHHHHHc--CCCE
Q 012991 151 VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT----SMPCVVIPVRKLVKICRDE--GVDQ 223 (452)
Q Consensus 151 a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~----n~tG~~~~l~~i~~l~~~~--~~~~ 223 (452)
-...|++.+.+ +...++.+ .+.+.+.+ +++|++|.+.-.. -|+=.+.++++|+++.|+. ++ +
T Consensus 135 L~dfgi~Y~~v----~Lt~~gkiD~~~v~~~i------~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~-i 203 (416)
T COG4100 135 LKDFGIKYKAV----PLTADGKIDIQAVKTAI------SDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNV-I 203 (416)
T ss_pred HHHhCcceeec----ccccCCcccHHHHHHhc------CccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCE-E
Confidence 02236788888 44456666 89999999 7899999886432 1222234567777788876 68 8
Q ss_pred EEEecccccCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCcccc
Q 012991 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSS 273 (452)
Q Consensus 224 ~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~ 273 (452)
++||.+++-..........++|++..|+-|.-+|..- .|++..+.++++.
T Consensus 204 vFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~ 255 (416)
T COG4100 204 VFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEA 255 (416)
T ss_pred EEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHh
Confidence 9999999887777777778999999999997444211 3788888888875
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00051 Score=61.35 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=99.0
Q ss_pred HHHHHHhHhCCCCCCcEEEec-ChhHHHHHHHHHhhcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEe
Q 012991 85 SRAAVKDLINADDVGEISLVD-NATTAAAIVLQQIGRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQ 162 (452)
Q Consensus 85 ~~~~la~~~~~~~~~~i~~t~-g~t~a~~~~~~~l~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~ 162 (452)
+..-+-++.|+....+.++++ -....+.+++..+.+ -+|. .-|+..+.+-.|..+.+-. .|+++..++
T Consensus 62 ~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~------krpkakyiiw~ridqks~~ksi~~----agfepiiie 131 (432)
T KOG3843|consen 62 FAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRH------KRPKAKYIIWLRIDQKSCFKSIIH----AGFEPIIIE 131 (432)
T ss_pred HHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhh------cCCcccEEEEEecchHHHHHHHHh----cCCCceeee
Confidence 334444555654233334333 333566677766643 2343 4677777776665555533 488888775
Q ss_pred CCCCCCChHHH--HHHHHHHHhccccCCCceEEEEEeccCCCCcc-cccHHHHHHHHHHcCCCEEEEecccccCCc---c
Q 012991 163 LPFPLASEEEI--INEFKKGIEKGKKDGKMIRLAIIDHITSMPCV-VIPVRKLVKICRDEGVDQVFVDAAHAMGSI---K 236 (452)
Q Consensus 163 ~~~~~~~~~~~--~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~-~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~---~ 236 (452)
.- .+.+..+ ++.+++.+++. ++..-+.+.+..+-..-. ...+++|+.+|..|++ +-+|..+++.-.. .
T Consensus 132 ~i--~d~d~l~tdleav~~~iee~---g~dcilci~sttscfapr~pd~leaiaaica~~di-phivnnayglqsee~i~ 205 (432)
T KOG3843|consen 132 NI--LDGDELITDLEAVEAIIEEL---GEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDI-PHIVNNAYGLQSEECIH 205 (432)
T ss_pred cc--ccchHHHHhHHHHHHHHHHh---CCceEEEEeecccccCCCCCchHHHHHHHHHccCc-hhhhccccccchHHHHH
Confidence 31 1222222 77777777654 444434333322211111 2348999999999999 6999988776432 1
Q ss_pred ---ccccccCccEEEEcCcccCcCCCCcEEEE-EecCcccc
Q 012991 237 ---IDVKEIGADFYVSNLHKWFFCPPSVAFLY-CRKSILSS 273 (452)
Q Consensus 237 ---~~~~~~~~d~~~~s~~K~l~g~~G~G~l~-~~~~~~~~ 273 (452)
-...--.+|.++-|..|.+..|.|.+++. +++..++.
T Consensus 206 ~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~ 246 (432)
T KOG3843|consen 206 KIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQE 246 (432)
T ss_pred HHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHH
Confidence 11111247889999999988888733332 35555554
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00064 Score=68.02 Aligned_cols=380 Identities=15% Similarity=0.066 Sum_probs=202.2
Q ss_pred HHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHH-HHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEe
Q 012991 29 IRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQ-LKFLQQPDDF--YFNSLRKGILESRAAVKDLINAD-DVGEISLV 104 (452)
Q Consensus 29 ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t 104 (452)
++++|..+ .|++........++..+....-. .....+|+.. .+........+.|-++..+++-. ....+.||
T Consensus 14 r~~e~s~~----~yldhag~tl~sesq~~g~~~~sq~~e~~nphs~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp 89 (728)
T KOG2142|consen 14 RDREFSRL----AYLDHAGRTLFSESQLEGVAFQSQSSENANPHSHLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLP 89 (728)
T ss_pred hhHHHHHH----HHHHhhhhhhhhhcccchhhhhhhccccCCCcccccchHHHHHHHHHHHHHHHHHhccccccccchhH
Confidence 67777643 28888877766655555532222 2223455554 23445567777888888898854 23577888
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCC---cchhHHHHHHHHHHhcCcEEEEE-eCCCCCCChHHHHHHHHHH
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHC---AFQAVKKSIQAYVTRAGGSVVEV-QLPFPLASEEEIINEFKKG 180 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~---~~~s~~~~~~~~a~~~g~~v~~~-~~~~~~~~~~~~~~~l~~~ 180 (452)
. .|+|+..++.++.+ ...+.+|--.+. .|-+....... -...|+.+..+ .+. ..++.... ...+..
T Consensus 90 ~-~t~al~~vae~fp~------~s~tekid~lrs~~y~hls~s~~~~~-~~~~~~gl~sy~q~~-~i~~~~~~-sls~~~ 159 (728)
T KOG2142|consen 90 A-LTEALKLVAEAFPF------YSQTEKIDNLRSDEYGHLSSSGHLMR-LDYSGIGLFSYSQTN-EISDSEEF-SLSESE 159 (728)
T ss_pred H-HHHHHHHHHHhCcc------ccccccccchhhhhhcccccccceee-eeeeccceEEeeeee-eccccccc-cccccc
Confidence 8 99999999999853 344444443333 23222100000 01123333333 110 01110000 001111
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
.. -....+.......|..|..+....+..+.-..+- ++++|.+.-....+++.....+|++.. +.| ++|.+.
T Consensus 160 ~~-----ls~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~-y~lldtaSrvSaf~Ldaesy~f~~~~~-llt-iFgyet 231 (728)
T KOG2142|consen 160 AN-----LSEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESE-YVLLDTASRVSAFPLDAESYPFDFNPK-LLT-IFGYET 231 (728)
T ss_pred cC-----cccchhcccchhcccccceeeeeeecccccCCce-EEEEEeecccccccchHhhCCCcccch-hee-ecCCCc
Confidence 10 1234456666666777765444444333333355 899999888888899999999999999 999 466553
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCc-------ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGL-------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~ 333 (452)
|.+......... +-....+.++.+.. -.+++..|+..+-.+++.........+..++...+......+.++
T Consensus 232 -gAvlv~~r~A~~-~Ggkt~sa~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~ 309 (728)
T KOG2142|consen 232 -GAVLVMNRSAEL-KGGKTASAEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANN 309 (728)
T ss_pred -hhhHHHhhhhHh-hcCccceeecccchHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHhhh
Confidence 444433222221 00000111222211 123456678888777777777777777667888888888888888
Q ss_pred HHHHHHHH---------cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCC
Q 012991 334 MARMLANA---------WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG 404 (452)
Q Consensus 334 l~~~L~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~ 404 (452)
....|.+. .+...+.| +..+.++.|.+.... +.++.--.+.... -++|..++++.+.. ++|...
T Consensus 310 whvlLda~~lG~kdmd~yglS~f~P-dfqg~sf~fv~g~d~--psgfGcl~VkKs~--i~~l~lrtGcfcn~--Gack~~ 382 (728)
T KOG2142|consen 310 WHVLLDALALGPKDMDSYGLSLFQP-DFQGPSFYFVFGRDD--PSGFGCLEVKKSA--ISGLELRTGCFCNI--GACKIY 382 (728)
T ss_pred HHHHHhhhccCcchHhhhhhhccCc-cceeeeEEEEeccCC--CCceeeeeeehhh--hhceeccCCCCCCC--cceeec
Confidence 88888763 22333443 334666666653210 0111111222222 35888887777532 234433
Q ss_pred C-------CC---C--CCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 405 A-------RD---K--DGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 405 ~-------~~---~--~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+ ++ + ...+.+.=-++ ++..|.+|+..++.++..-.
T Consensus 383 pgl~~~~~~~~~~~g~~cgD~dg~~~s-~~~~~~~~~~a~~~~~v~~~ 429 (728)
T KOG2142|consen 383 PGLYLEMSQKGLSAGKGCGDNDGQPVS-GYMQTPADVGAYLSAQVSDV 429 (728)
T ss_pred ccccHHHHHHHhhhccccccCCCCccc-ccccchhhhhHHHHHhhhhh
Confidence 2 00 0 00000000155 55568888888888765544
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0014 Score=55.26 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=41.2
Q ss_pred HHHHHHHHHhHh----C--CC-CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchh
Q 012991 82 ILESRAAVKDLI----N--AD-DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQA 142 (452)
Q Consensus 82 ~~~~~~~la~~~----~--~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s 142 (452)
..++|+++++++ | ++ ++++|++|+|+++|+.+++.++ +++||.|++++|.|++
T Consensus 94 ~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l--------~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 94 LANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCI--------ADPGDAFLVPTPYYAA 153 (153)
T ss_pred cHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHH--------cCCCCEEEEeCCCCCC
Confidence 444555555544 5 22 4789999999999999999987 5899999999999863
|
|
| >KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.7 Score=42.93 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=80.6
Q ss_pred EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCC---hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccc
Q 012991 132 TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLAS---EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVI 207 (452)
Q Consensus 132 ~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~---~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~ 207 (452)
.+.++...|. ....++|+..|+.-..+.+....+. ++.+ ...+++.|+++-..+++|-+++..-..+..|...
T Consensus 233 t~YiS~alh~---~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnD 309 (838)
T KOG0630|consen 233 TFYISEALHM---DLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQND 309 (838)
T ss_pred eEEEcccccH---HHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchH
Confidence 3444444443 2344446777876665543212222 3466 7888888887666577787777777778889998
Q ss_pred cHHHHHHHHHHcC-CCEEEEecccccCCccc-ccc------ccCccEEEEcCcccCcCCCCcEEEEEec
Q 012991 208 PVRKLVKICRDEG-VDQVFVDAAHAMGSIKI-DVK------EIGADFYVSNLHKWFFCPPSVAFLYCRK 268 (452)
Q Consensus 208 ~l~~i~~l~~~~~-~~~~ivD~a~~~g~~~~-~~~------~~~~d~~~~s~~K~l~g~~G~G~l~~~~ 268 (452)
-+-+|.++|++++ .| +++-| |++..+.. ... .-..|.++....-|+ |.+..-++...+
T Consensus 310 mi~kildi~eahakfW-LHasG-haiAALt~aepnnil~HV~eqldSMal~ialWL-GiPSaPiV~LHR 375 (838)
T KOG0630|consen 310 MILKILDICEAHAKFW-LHASG-HAIAALTCAEPNNILGHVEEQLDSMALNIALWL-GIPSAPIVLLHR 375 (838)
T ss_pred HHHHHHHHHHHhhhee-Eeecc-chhhheeecCcccchhHHHHHHhhccchhHHHh-CCCCCceEEeec
Confidence 9999999999997 84 88775 33322211 111 113577777778885 444344544433
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.40 E-value=1.2 Score=45.43 Aligned_cols=175 Identities=17% Similarity=0.182 Sum_probs=111.1
Q ss_pred HHHHHHhHhCCCCCC-cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHH-HHHHHhcCcEEEEEe
Q 012991 85 SRAAVKDLINADDVG-EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSI-QAYVTRAGGSVVEVQ 162 (452)
Q Consensus 85 ~~~~la~~~~~~~~~-~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~-~~~a~~~g~~v~~~~ 162 (452)
+++.+-++++.++.+ .+++|.+-.+|..+.+.... ++-... +..=..|++-...| ...|+..|+++....
T Consensus 181 ik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~-------f~~~~~-lltiFgyetgAvlv~~r~A~~~Ggkt~sa~ 252 (728)
T KOG2142|consen 181 IKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYP-------FDFNPK-LLTIFGYETGAVLVMNRSAELKGGKTASAE 252 (728)
T ss_pred eeeeeecccccCCceEEEEEeecccccccchHhhCC-------Ccccch-heeecCCCchhhHHHhhhhHhhcCccceee
Confidence 777888888887444 44678888888888887652 222223 55545555522222 222566677777665
Q ss_pred CCCCCCChHHHHHHHHHHHhccccCCCc--eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc--
Q 012991 163 LPFPLASEEEIINEFKKGIEKGKKDGKM--IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID-- 238 (452)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~--~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~-- 238 (452)
.+|| .....-++|++.++..+..... .-+.+|+..+-.||..+++.++ .++.+.++ .+..|.-+- |...++
T Consensus 253 f~wp--~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wm-t~al~~~w-hvlLda~~l-G~kdmd~y 327 (728)
T KOG2142|consen 253 FSWP--MLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWM-TLALANNW-HVLLDALAL-GPKDMDSY 327 (728)
T ss_pred cccc--hHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHH-HHHHhhhH-HHHHhhhcc-CcchHhhh
Confidence 5443 2233367899998753321111 2357888888899999999998 56666677 688885433 543332
Q ss_pred -ccccCccEEEEcCcccCcC--CCCcEEEEEecCccc
Q 012991 239 -VKEIGADFYVSNLHKWFFC--PPSVAFLYCRKSILS 272 (452)
Q Consensus 239 -~~~~~~d~~~~s~~K~l~g--~~G~G~l~~~~~~~~ 272 (452)
.....+|+...++++.++- |.|.|++.+++-.+.
T Consensus 328 glS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~i~ 364 (728)
T KOG2142|consen 328 GLSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSAIS 364 (728)
T ss_pred hhhccCccceeeeEEEEeccCCCCceeeeeeehhhhh
Confidence 3334589999999996543 566888888775543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 452 | ||||
| 1elq_A | 390 | Crystal Structure Of The Cystine C-S Lyase C-Des Le | 9e-10 | ||
| 1n2t_A | 386 | C-Des Mutant K223a With Gly Covalenty Linked To The | 4e-09 | ||
| 1kmj_A | 406 | E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE | 8e-05 | ||
| 1jf9_A | 408 | Crystal Structure Of Selenocysteine Lyase Length = | 8e-05 | ||
| 1c0n_A | 406 | Csdb Protein, Nifs Homologue Length = 406 | 9e-05 | ||
| 1i29_A | 406 | Crystal Structure Of Csdb Complexed With L-Propargy | 9e-05 |
| >pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des Length = 390 | Back alignment and structure |
|
| >pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The Plp-Cofactor Length = 386 | Back alignment and structure |
|
| >pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE PERSULFIDE Intermediate (Residue Css). Length = 406 | Back alignment and structure |
|
| >pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase Length = 408 | Back alignment and structure |
|
| >pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue Length = 406 | Back alignment and structure |
|
| >pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With L-Propargylglycine Length = 406 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 8e-18
Identities = 65/446 (14%), Positives = 136/446 (30%), Gaps = 87/446 (19%)
Query: 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKG----- 81
A +R +F GV ++ S G+ P + LA Q + + + N L +
Sbjct: 17 APLRQQF-ALPEGVIYLDGNSLGARPVAALARAQA----VIAEE---WGNGLIRSWNSAG 68
Query: 82 ----ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLH 137
+ LI A D GE+ + D + VL R R ++
Sbjct: 69 WRDLSERLGNRLATLIGARD-GEVVVTDTTSINLFKVLSAALR-VQATRSPERRVIVTET 126
Query: 138 CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197
F + + ++L + I++ + ++
Sbjct: 127 SNFPTDLYIAEG-LADMLQQGYTLRLVDSPEELPQAIDQD-------------TAVVMLT 172
Query: 198 HITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFC 257
H+ + ++ L + + G D AH+ G++ +D+ + GAD+ + +K+
Sbjct: 173 HVNYKTGYMHDMQALTALSHECGA-LAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNG 231
Query: 258 PP-SVAFLYCRKSILSSDMHHPV----------VSHEFGNGLPIESAWIGTRDYSAQLVI 306
P S AF++ + + + I GT+ ++ ++
Sbjct: 232 GPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMV 291
Query: 307 PSAVTFVSRFEGGIDGIMQRNHEQAL-----KMARMLANAWGTSLGSP--PEICAAMVMV 359
+ + + + + R AL ++ A +L +P + V
Sbjct: 292 ECGLDVFA--QTDMASL--RRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSF 347
Query: 360 GLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419
P V+ AL RG V Y R+ + R
Sbjct: 348 EHPEGYAVI---QALIDRG---------VIGDY-------------REPRIM-----RFG 377
Query: 420 -HQVYNTLEDYEKFRDAVILLVEEGQ 444
+Y T + + +++
Sbjct: 378 FTPLYTTFTEVWDAVQILGEILDRKT 403
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 62/378 (16%), Positives = 121/378 (32%), Gaps = 73/378 (19%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVL---MLHCA- 139
+R AV DL+NAD G + L + +++ + G V+ + A
Sbjct: 73 AAREAVADLVNADP-GGVVLGADRAVLLSLLAEASSSRAGLG-----YEVIVSRLDDEAN 126
Query: 140 -----FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194
A + G+ V+ + + E +++ I K RL
Sbjct: 127 IAPWLRAAHRY----------GAKVKW-AEVDIETGELPTWQWESLI------SKSTRLV 169
Query: 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKW 254
++ + V +R + K+ D G V VD + A +D++E AD N H W
Sbjct: 170 AVNSASGTLGGVTDLRAMTKLVHDVGA-LVVVDHSAAAPYRLLDIRETDADVVTVNAHAW 228
Query: 255 FFCPPSVAFLYCRKSILSSDMH------HPVVSHEFGNGLPIESAWIGTR---DYSAQLV 305
PP A ++ S+++S + G+ G +Y A L
Sbjct: 229 -GGPPIGAMVFRDPSVMNS-FGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALD 286
Query: 306 IPSAVTFVSRFEGGIDGIMQRNHEQALK---MARMLANAWGTSLGSPPEICAAM--VMVG 360
+ + R + + + M + + +G P + +
Sbjct: 287 ESARGSRRERLAVSMQSA--DAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHK 344
Query: 361 LPSRLRVMGEDDALRL--RGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418
+P+ + RL G L + + G D + G +
Sbjct: 345 VPA------DRVVQRLADNGILAIANT-----GSRV-----LDVLGVND----VGGAVTV 384
Query: 419 SHQVYNTLEDYEKFRDAV 436
Y+T+ + ++ A+
Sbjct: 385 GLAHYSTMAEVDQLVRAL 402
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 9e-17
Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 34/223 (15%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVL---MLHCAF 140
+ + D + + A A V+ + + ++ V+ H
Sbjct: 58 FIHNQLPKFLGCD---VARVTNGAREAKFAVMHSLAK--------KDAWVVMDENCH--- 103
Query: 141 QAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINE-FKKGIEKGKKDGKMIRLAIIDHI 199
S RAG ++ V P + I E F + IE+ K + LA+I +
Sbjct: 104 ----YSSYVAAERAGLNIALV--PKTDYPDYAITPENFAQTIEE-TKKRGEVVLALITYP 156
Query: 200 TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPP 259
+ V+K+ K+C + V + V+ A+A+G + + +KEIGADF V + HK
Sbjct: 157 DGNYGNLPDVKKIAKVCSEYDV-PLLVNGAYAIGRMPVSLKEIGADFIVGSGHK--SMAA 213
Query: 260 S--VAFLYCRKSILSS----DMHHPVVSHEFGNGLPIESAWIG 296
S + + ++ + E + I
Sbjct: 214 SGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIIT 256
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 47/202 (23%), Positives = 72/202 (35%), Gaps = 40/202 (19%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHC----- 138
+ R A+ + N D I++ DN TT IVL G + +G D +L+ C
Sbjct: 63 QLRQALAETFNVDP-NTITITDNVTTGCDIVLW--GLDWHQG-----DEILLTDCEHPGI 114
Query: 139 --AFQAVKKSIQAYVTRAGGSVVEVQ----LPFPLASEEEIINEFKKGIEKGKKDGKMIR 192
QA+ V A + R
Sbjct: 115 IAIVQAIAARFGITY-----RFFPVAATLNQGDAAAVLANHLGP-------------KTR 156
Query: 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQ---VFVDAAHAMGSIKIDVKEIGADFYVS 249
L I+ H+ V+P+ +++ +CR + V VD A + GS+ +D + D+Y
Sbjct: 157 LVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAF 216
Query: 250 NLHKWFFCPPSVAFLYCRKSIL 271
HKWF P V LY L
Sbjct: 217 TGHKWFAGPAGVGGLYIHGDCL 238
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-13
Identities = 52/381 (13%), Positives = 129/381 (33%), Gaps = 57/381 (14%)
Query: 86 RAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKK 145
+KD++ A++ EI+L++ T L + F + R +L+ AF +
Sbjct: 117 VGLMKDIVGANE-KEIALMNALTVN----LHLLMLSFFKPTPKR-YKILLEAKAFPSDHY 170
Query: 146 SIQAYVTRAGGSVVEVQLPFPLASEEEIIN--EFKKGIEKGKKDGKMIRLAIIDHITSMP 203
+I++ + G ++ E EE + + + IEK +I + + T
Sbjct: 171 AIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTG-- 228
Query: 204 CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPP-SVA 262
+ + K + +G V D AHA+G++++ + + G DF +K+ +A
Sbjct: 229 -QHFNIPAITKAGQAKGC-YVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIA 286
Query: 263 FLYCRKSILSSDMHHPVV------SHEFGNG---LPIESA---WIGTRDYSAQLVIPSAV 310
+ + + V S F I I + +++
Sbjct: 287 GAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASL 346
Query: 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE 370
+ + + +++ + ++ + +G + + + ++
Sbjct: 347 EIFK--QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKP-----------VVNIITP 393
Query: 371 DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT-----GYARIS--HQVY 423
L + F + +K G++ R++ +Y
Sbjct: 394 SHVEERGCQLTITF-----------SVPNKDVFQELEKRGVVCDKRNPNGIRVAPVP-LY 441
Query: 424 NTLEDYEKFRDAVILLVEEGQ 444
N+ D KF + + +++ +
Sbjct: 442 NSFHDVYKFTNLLTSILDSAE 462
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 87/397 (21%), Positives = 141/397 (35%), Gaps = 100/397 (25%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVL---MLHCA- 139
R V INA EI NAT A +V + D ++ M H +
Sbjct: 76 AVRNKVAKFINARSPREIVYTRNATEAINLVAY----SWGMNNLKAGDEIITTVMEHHSN 131
Query: 140 -----FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGI-EKGKKDGKMIR 192
A K G+V++ L +E + FK + EK K
Sbjct: 132 LVPWQMVAAKT----------GAVLKF---VQLDEQESFDLEHFKTLLSEKTK------- 171
Query: 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLH 252
L + HI++ V P ++ ++ G +V VDA + +DV+ I D+ V++ H
Sbjct: 172 LVTVVHISNTLGCVNPAEEIAQLAHQAGA-KVLVDACQSAPHYPLDVQLIDCDWLVASGH 230
Query: 253 KWFFCPPSVAFLYCRKSILSS--------DMHHPVVSHEFG-NGLPI--ESAWIGTRDYS 301
K P + FLY ++ IL + +M V F LP E+ GT +
Sbjct: 231 K-MCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEA---GTPAIA 286
Query: 302 AQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL 361
+ + +AV +++ G++ I N+E L + + +
Sbjct: 287 EAIALGAAVDYLTDL--GMENI--HNYEVEL-THYLWQG-----------------LGQI 324
Query: 362 PSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI---------- 411
P LR+ G + R L F V +H D D+DGI
Sbjct: 325 PQ-LRLYGPNPKHGDRAAL-ASFNVA-GLH---ASDVAT----MVDQDGIAIRSGHHCTQ 374
Query: 412 -------ITGYARISHQVYNTLEDYEKFRDAVILLVE 441
+G AR S YNT E+ + F ++ +
Sbjct: 375 PLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR 411
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 74/398 (18%), Positives = 132/398 (33%), Gaps = 105/398 (26%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVL---MLHCA- 139
R INA E+ V T +V + D ++ M H A
Sbjct: 71 NVRKRASLFINARSAEELVFVRGTTEGINLVAN----SWGNSNVRAGDNIIISQMEHHAN 126
Query: 140 -----FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGI-EKGKKDGKMIR 192
+ G+ + V PL + + + EK +
Sbjct: 127 IVPWQMLCARV----------GAELRV---IPLNPDGTLQLETLPTLFDEKTR------- 166
Query: 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLH 252
L I H++++ P+ +++ + G +V VD A A+ +DV+ + DFYV + H
Sbjct: 167 LLAITHVSNVLGTENPLAEMITLAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSGH 225
Query: 253 KWFFCPPSVAFLYCRKSILSS--------DMHHPVVSHEFG--NGLPI--ESAWIGTRDY 300
K + P + LY ++++L M V E P E+ GT +
Sbjct: 226 K-LYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA---GTPNT 281
Query: 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVG 360
+ + +A+ +VS G++ I +EQ L M L+ +
Sbjct: 282 GGIIGLGAALEYVSAL--GLNNI--AEYEQNL-MHYALSQ-----------------LES 319
Query: 361 LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI--------- 411
+P L + G + R + + F + H D G D GI
Sbjct: 320 VPD-LTLYGPQN----RLGV-IAFNLG-KHH---AYDVGS----FLDNYGIAVRTGHHCA 365
Query: 412 --------ITGYARISHQVYNTLEDYEKFRDAVILLVE 441
+ R S +YNT E+ ++ + +
Sbjct: 366 MPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR 403
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 205 VVIPVRKLVKICRDEGVDQVF-VDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
+ PV + +I + + + + VDA +G I ++++ D+ + HK F P V
Sbjct: 154 TIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHK-FHGPKGVGI 212
Query: 264 LYCRKSI 270
Y RK +
Sbjct: 213 TYIRKGV 219
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 205 VVIPVRKLVKICRDEGVDQVF-VDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
+ PV ++ ++ + +DA ++G I++DV++IGAD + + + P V
Sbjct: 153 TIQPVEEISEVLAGKAA---LHIDATASVGQIEVDVEKIGADMLTISSND-IYGPKGVGA 208
Query: 264 LYCRKSI-LSSDMH 276
L+ RK L +
Sbjct: 209 LWIRKEAKLQPVIL 222
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 205 VVIPVRKLVKICRDEGVDQVF-VDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
VV + + ++CR G+ ++ VDA ++G + ID+ ++ D + HK + P +
Sbjct: 178 VVQDIAAIGEMCRARGI--IYHVDATQSVGKLPIDLSQLKVDLMSFSGHK-IYGPKGIGA 234
Query: 264 LYCRK 268
LY R+
Sbjct: 235 LYVRR 239
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 38/253 (15%)
Query: 151 VTRAGGSVVEVQLP----FPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCV 205
R ++E+++P + +++ + I + + H T
Sbjct: 102 AKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPE-----------ITVVSVCHHDTPS-GT 149
Query: 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265
+ P+ + + G + VDA + G +K ++ AD YV+ +K PP + +
Sbjct: 150 INPIDAIGALVSAHGA-YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMG 208
Query: 266 ----CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY----SAQLVIPSAVTFVSRFE 317
+ ++ + + + E+AW + + S + V
Sbjct: 209 VSERAWAKMKANPL---APRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLN 265
Query: 318 GGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVM--VGLPSRLRVMGEDDALR 375
G + + R H K R A G S+ + + A+ V P + D
Sbjct: 266 EGPEAVWAR-HALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGV------DEKA 318
Query: 376 LRGHLRVRFGVEV 388
LR R R+GV
Sbjct: 319 LRQAARARYGVVF 331
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 7e-06
Identities = 61/464 (13%), Positives = 124/464 (26%), Gaps = 130/464 (28%)
Query: 12 HHVSKKPKLTRCISEAEIRD---EFSHHQ----HGVARINNGSFGSCPKSVLADQQKWQL 64
++VS+ ++R E + GV G G K+ +A
Sbjct: 129 YNVSRLQPYL------KLRQALLELRPAKNVLIDGVL----G-SG---KTWVALDVCLSY 174
Query: 65 KFLQQPDD--FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF 122
K + D F+ N + N+ +LQ++
Sbjct: 175 KVQCKMDFKIFWLN---------------------LKN----CNSPETVLEMLQKL---- 205
Query: 123 TEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIE 182
++ D + +R+ S + + S + + K
Sbjct: 206 ----LYQID----------------PNWTSRSDHS---SNIKLRIHSIQAELRRLLK--S 240
Query: 183 KGKKDGKMIRLAIIDHITSMPCVV----IPVRKLVKICRDEGVDQVFVDAAHAMGSIKID 238
K ++ L ++ ++ + + + L+ R + V D A + I
Sbjct: 241 KPYENC----LLVLLNVQN-AKAWNAFNLSCKILL-TTRFKQV----TDFLSAATTTHIS 290
Query: 239 VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH--HPVVSHEFGNGLPIESAWIG 296
+ + + +L CR L ++ +P + +
Sbjct: 291 LDHHSMTLTPDEVKSLL-----LKYLDCRPQDLPREVLTTNPRRLSIIAESI---RDGLA 342
Query: 297 TRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM--------ARMLANAWGTSLGS 348
T D + T + ++ R L + +L+ W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV--- 399
Query: 349 PPEICAAMVMVGLPSRLRVMGEDDALRLRGH-----LRVRFGVEVPIH------YQAPKD 397
+ +V+ L V + + L+V+ E +H Y PK
Sbjct: 400 -IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 398 DGQPQAGARDKDGIITGYARISHQVYNT--LEDYEKFRDAVILL 439
D Y+ I H + N E FR + L
Sbjct: 459 FDSDDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFRM--VFL 498
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 46/373 (12%), Positives = 105/373 (28%), Gaps = 121/373 (32%)
Query: 170 EEEIINEFK-KGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQV--FV 226
E+ ++ F K ++ K ++ IDHI V +L + + V FV
Sbjct: 26 EDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 227 DAAHA------MGSIKIDVKE--IGADFYVSNLHKWF-----FCPPSVA----------- 262
+ M IK + ++ + Y+ + + F +V+
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 263 ----------FLY----CRKSILSSDMHHPVVSHEFGNGLPIESAWI--GTRDYSAQLVI 306
+ K+ ++ D+ +S++ + + W+ + S + V+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCN-SPETVL 199
Query: 307 PSAVTFVSRFEG-------GIDGIMQRNHEQALKMARM------------LANAWGTSLG 347
+ + + I R H ++ R+ L N
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN---- 255
Query: 348 SPPEI-------C-----------AAMVMVGLPSRLRV------MGEDDALRL-RGHLRV 382
+ C + + + + + D+ L +L
Sbjct: 256 --AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 383 RFGVEVPIHYQAPKDDGQPQA----GARDKDGIIT-------GYARISHQV---YNTLED 428
R ++P + P+ +DG+ T +++ + N LE
Sbjct: 314 RPQ-DLPR--EVLT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 429 YE---KFRDAVIL 438
E F +
Sbjct: 369 AEYRKMFDRLSVF 381
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 37/265 (13%), Positives = 80/265 (30%), Gaps = 48/265 (18%)
Query: 151 VTRAGGSVVEVQLP----FPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCV 205
R V +++P F E+ + + RL + TS +
Sbjct: 107 ARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIR------------PRLLLTVQGDTS-TTM 153
Query: 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFL- 264
+ P+ +L +ICR + DA ++G ++ G D + + K P + +
Sbjct: 154 LQPLAELGEICRRYDA-LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPIT 212
Query: 265 ----------------YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY----SAQL 304
++ D ++ + + + W R +
Sbjct: 213 LSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTA 272
Query: 305 VIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMV-MVGLPS 363
+ + + G+D + R H+ A G + V V +P
Sbjct: 273 LFGARECARLILQEGLDYGIAR-HKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQ 331
Query: 364 RLRVMGEDDALRLRGHLRVRFGVEV 388
+ + + R + FG+E+
Sbjct: 332 GI------NGDQARKLMLEDFGIEI 350
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 205 VVIPVRKLVKICRDEGVDQVF---------VDAAHAMGSIKIDVKEIGADFYVSNLHKWF 255
V++P+ ++ + + + DAA A+G ++DV+++G DF HK
Sbjct: 190 VIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHK-- 247
Query: 256 FCPPSVAFLYCRK 268
F P + LY R
Sbjct: 248 FYGPRIGALYVRG 260
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 46/267 (17%), Positives = 80/267 (29%), Gaps = 50/267 (18%)
Query: 151 VTRAGGSVVEVQLP----FPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCV 205
R G +V ++ F I + K ++ + H TS
Sbjct: 105 AERYGANVHMLECEWGTVFDPEDIIREIKKVK------------PKIVAMVHGETS-TGR 151
Query: 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFL- 264
+ P++ + + CR E VDA +G ++ V E D + K P +A +
Sbjct: 152 IHPLKAIGEACRTEDA-LFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPIT 210
Query: 265 ---------YCRKSILSSDMHHPVVSHEFGNG---------LPIESAWIGTRDY----SA 302
RK + + GN +E W R +
Sbjct: 211 YNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEAT 270
Query: 303 QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL-GSPPEICAAMVMVGL 361
++ E G++ +R H A G L G + V +
Sbjct: 271 TMLYALREGVRLVLEEGLETRFER-HRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEI 329
Query: 362 PSRLRVMGEDDALRLRGHLRVRFGVEV 388
P + D +R L +FG+E+
Sbjct: 330 PGGI------DGESVRDMLLAQFGIEI 350
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 44/252 (17%), Positives = 77/252 (30%), Gaps = 38/252 (15%)
Query: 151 VTRAGGSVVEVQLP----FPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCV 205
R G V + P F L E + +E + + + H TS
Sbjct: 128 AGRYGADVRTISKPWGEVFSLE-------ELRTALETHR-----PAILALVHAETS-TGA 174
Query: 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265
P+ + ++CR+ G + VD ++G + I + G D S K C P +
Sbjct: 175 RQPLEGVGELCREFGT-LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFT 233
Query: 266 ----CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY----SAQLVIPSAVTFVSRFE 317
+ + V + + + W R Y L +
Sbjct: 234 MSSRAIEKLQRRRT--KVANWYL-DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQ 290
Query: 318 GGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMV-MVGLPSRLRVMGEDDALRL 376
G+ QR H++ ++ G SL E + V +P + D +
Sbjct: 291 EGLANCWQR-HQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGV------DGKAV 343
Query: 377 RGHLRVRFGVEV 388
L +EV
Sbjct: 344 ARRLLNEHNIEV 355
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 205 VVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFL 264
++ P+ ++ + G VDA + G I +D+ + D+ +S+ +K P AF+
Sbjct: 146 MLNPIDEVGALAHRYGKT-YIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFV 204
Query: 265 YCRKSIL 271
R+ L
Sbjct: 205 IAREQKL 211
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 34/253 (13%), Positives = 78/253 (30%), Gaps = 36/253 (14%)
Query: 151 VTRAGGSVVEVQLP----FPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCV 205
R G V ++ P F L + IE + + + H +S +
Sbjct: 112 SERYGADVRTIEGPPDRPFSLE-------TLARAIELHQ-----PKCLFLTHGDSS-SGL 158
Query: 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265
+ P+ + +IC + VDA ++ + + + D + K PP + +
Sbjct: 159 LQPLEGVGQICHQHDC-LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPIS 217
Query: 266 ----CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY----SAQLVIPSAVTFVSRFE 317
I + V + + + Y ++ L+ E
Sbjct: 218 ISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAE 277
Query: 318 GGIDGIMQRNHEQALKMARMLANAWGTSL--GSPPEICAAMVMVGLPSRLRVMGEDDALR 375
G++ ++R + ++ G + P + + +P + D +
Sbjct: 278 EGLENQIKR-RIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGV------DWWK 330
Query: 376 LRGHLRVRFGVEV 388
+ + F +EV
Sbjct: 331 VSQYAMNNFSLEV 343
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} Length = 379 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 48/323 (14%), Positives = 94/323 (29%), Gaps = 53/323 (16%)
Query: 127 FHRNDTVLMLHC---------AFQAVKKSIQAYVTRAG-GSVVEVQLPFPLASEEEIINE 176
++ L++ + K + + V A E PF E + +
Sbjct: 71 LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAK 130
Query: 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMG 233
K+ + H+ + +++ ++ L + G + +D A G
Sbjct: 131 IKE---------DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGL-LVIDCI-ASG 179
Query: 234 SIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSIL--SSDMHHPVVSHEFGNGLPI- 290
+ +D+KE+G D +S K + P + + + S + L I
Sbjct: 180 CVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIM 239
Query: 291 ESAWIGTRDYSA----QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346
+ G Y A + + E G D + + R + G
Sbjct: 240 RAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDA-QWELGNRVRKVLTDKGIES 298
Query: 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP-QAGA 405
+ A V+V E D +G G+++ G P + G
Sbjct: 299 VAAEGFEAPGVVV-------SYTERDD-MHKGSAFAEAGLQI--------AAGVPLKVGE 342
Query: 406 RDKDGIITGYARISHQVYNTLED 428
D R+ + L D
Sbjct: 343 PDNFKTF----RLGLFGLDKLTD 361
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 205 VVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFL 264
V+ + + C+ + D A + ++ E GAD ++ K CPP ++ +
Sbjct: 159 VLYDTMMIGEFCKKNNM-FFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVI 217
Query: 265 YCRK 268
Sbjct: 218 VLAP 221
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 18/119 (15%)
Query: 151 VTRAGGSVVEVQLP----FPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCV 205
V G V ++ + + K + I + TS V
Sbjct: 114 VESNGRKAVVLEYEPGKAVKPE-------DLDDALRKNPD----VEAVTITYNETS-TGV 161
Query: 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFL 264
+ P+ +L K+ ++ VFVDA AMG I + G D S+ K F PP +A
Sbjct: 162 LNPLPELAKVAKEHDK-LVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIG 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 452 | |||
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 100.0 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.98 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.98 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.98 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.98 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.98 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.98 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.97 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.97 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.97 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.97 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.97 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.97 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.97 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.97 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.97 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.97 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.97 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.97 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.97 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.97 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.97 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.97 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.97 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.97 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.97 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.97 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.97 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.97 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.97 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.97 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.97 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.97 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.97 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.97 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.97 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.97 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.97 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.97 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.97 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.97 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.97 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.97 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.97 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.97 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.97 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.97 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.96 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.96 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.96 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.96 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.96 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.96 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.96 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.96 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.96 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.96 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.96 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.96 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.96 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.96 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.96 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.96 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.96 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.96 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.96 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.95 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.95 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.95 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.95 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.95 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.95 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.95 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.95 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.95 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.95 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.95 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.95 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.95 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.95 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.95 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.95 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.95 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.95 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.95 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.95 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.95 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.94 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.94 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.94 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.94 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.94 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.94 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.94 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.94 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.94 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.94 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.94 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.94 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.94 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.94 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.94 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.94 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.94 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.94 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.93 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.93 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.93 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.93 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.93 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.93 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.93 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.93 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.93 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.93 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.93 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.88 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.93 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.93 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.93 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.93 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.93 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.93 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.92 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.92 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.92 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.92 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.92 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.92 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.92 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.92 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.92 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.92 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.92 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.92 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.92 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.92 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.91 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.91 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.91 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.91 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.91 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.91 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.91 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.9 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.9 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.9 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.9 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.9 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.9 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.9 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.9 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.9 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.89 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.89 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.89 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.89 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.89 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.89 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.88 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.88 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.88 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.88 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.88 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.88 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.88 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.88 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.87 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.87 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.86 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.86 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.85 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.85 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.85 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.81 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.81 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.76 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.61 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.65 |
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=320.88 Aligned_cols=380 Identities=18% Similarity=0.273 Sum_probs=292.1
Q ss_pred CCCHHHHHhhhccCCC-----CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhC
Q 012991 23 CISEAEIRDEFSHHQH-----GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLIN 94 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~-----~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~ 94 (452)
.++++.+|+.||.... +++||+.+..++.|+.+.+++.+.+.....+++. .+.+...+...+++++++++++
T Consensus 2 ~~~~~~~r~~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 81 (406)
T 1kmj_A 2 IFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 81 (406)
T ss_dssp CCCHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhCcccccccCCCceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 4678899999997543 5899999999999999999999988765444432 2345567789999999999999
Q ss_pred CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-
Q 012991 95 ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI- 173 (452)
Q Consensus 95 ~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~- 173 (452)
.++++++++|+|+|+|+.+++.++.+. .+++||+|+++.++|++....+..+++..|.+++.++. +.++.+
T Consensus 82 ~~~~~~v~~~~g~t~a~~~~~~~~~~~----~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~d 153 (406)
T 1kmj_A 82 ARSAEELVFVRGTTEGINLVANSWGNS----NVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL----NPDGTLQ 153 (406)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHTHHH----HCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB----CTTSCBC
T ss_pred CCCCCeEEEeCChhHHHHHHHHHhhhh----cCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEec----CCCCCcC
Confidence 832589999999999999999976210 04789999999999999887877767778999999954 333334
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcc
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHK 253 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K 253 (452)
+++|++++ .+++++|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|..++++...++|++++|+||
T Consensus 154 ~~~l~~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K 226 (406)
T 1kmj_A 154 LETLPTLF------DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSGHK 226 (406)
T ss_dssp GGGHHHHC------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred HHHHHHHh------ccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCC-EEEEEchhhcCCCCCcccccCCCEEEEEchh
Confidence 78899988 5689999999999999999999999999999999 7999999999887777666689999999999
Q ss_pred cCcCCCCcEEEEEecCccccCCCCCceeccCCCCc--------------ccccccccccCccccccHHHHHHHHHHhhcC
Q 012991 254 WFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGL--------------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGG 319 (452)
Q Consensus 254 ~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g 319 (452)
+ +|+.|+|++++++++++. + .+.. .++.. ....+..++++....+++.++++++.+. +
T Consensus 227 ~-~g~~G~G~~~~~~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~ 298 (406)
T 1kmj_A 227 L-YGPTGIGILYVKEALLQE-M-PPWE---GGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSAL--G 298 (406)
T ss_dssp T-TSCTTCEEEEECHHHHHH-C-CCSS---CSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH--C
T ss_pred c-cCCCCcEEEEEeHHHHhh-c-CCcc---cCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHc--C
Confidence 6 588889999999887765 2 2221 11110 0011234566766666676778887754 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 320 IDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
++.++++.+++++++.+.|.+++++++..+. ..++++.+.++ +.+..++.+.|.+ .||.+..+..+...
T Consensus 299 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~g~~~~~~-- 367 (406)
T 1kmj_A 299 LNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-NRLGVIAFNLG-------KHHAYDVGSFLDN-YGIAVRTGHHCAMP-- 367 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEEESCT-TCCSEEEEEET-------TCCHHHHHHHHHH-TTEECEEECTTCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-CcCCEEEEEEC-------CCCHHHHHHHHhh-CCcEEEeccccchH--
Confidence 8999999999999999999887777766553 23667777765 3456778888866 49999765432100
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+. ...++++|++++.++|++|+++++++|+++++.
T Consensus 368 -----~~~~-~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 368 -----LMAY-YNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp -----HHHH-TTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHh-cCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 0000 012479999999999999999999999998753
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=322.74 Aligned_cols=371 Identities=17% Similarity=0.148 Sum_probs=289.5
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
-+++.+|++||...++.+|||.++.++.|+.+.+++.+.+.....+++.. ++....+..+++++++++++|++ ++++
T Consensus 11 ~~~~~~r~~fp~~~~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v 89 (406)
T 3cai_A 11 YDVARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD-PGGV 89 (406)
T ss_dssp CCHHHHHHTCTTTTSSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGE
T ss_pred ccHHHHHHhhhhcCCCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCeE
Confidence 46789999999886679999999988999999999999887543344332 23345678899999999999995 7899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++|+|+|+++.+++.++.+ .+++||+|+++.++|+++...+..++++.|.+++.++++. +++.+ +++|++.
T Consensus 90 ~~~~g~t~al~~~~~~l~~-----~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~---~~~~~d~~~l~~~ 161 (406)
T 3cai_A 90 VLGADRAVLLSLLAEASSS-----RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI---ETGELPTWQWESL 161 (406)
T ss_dssp EEESCHHHHHHHHHHHTGG-----GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT---TTCCCCGGGHHHH
T ss_pred EEeCChHHHHHHHHHHHhh-----ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc---ccCCcCHHHHHHH
Confidence 9999999999999987632 1478999999999999998888776676799999995420 23334 7899998
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+ ++++++|++++++||||.+.|+++|.++|+++|+ ++|+|++|+.|..++++..+++|++++|+||+ +||.
T Consensus 162 l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~-~g~~- 232 (406)
T 3cai_A 162 I------SKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGA-LVVVDHSAAAPYRLLDIRETDADVVTVNAHAW-GGPP- 232 (406)
T ss_dssp C------CTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTC-EEEEECTTTTTTCCCCHHHHCCSEEEEEGGGG-TSCS-
T ss_pred h------CCCceEEEEeCCcCCccccCCHHHHHHHHHHcCC-EEEEEcccccCCCCCCchhcCCCEEEeehhhh-cCCC-
Confidence 8 5689999999999999999999999999999999 79999999998877776667899999999996 6765
Q ss_pred cE-EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC--------------HHHHHH
Q 012991 261 VA-FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG--------------IDGIMQ 325 (452)
Q Consensus 261 ~G-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g--------------~~~~~~ 325 (452)
+| ++++++++++. + .+.. ..++... ...+..++++...+.++.++++++.+. | ++.+++
T Consensus 233 ~G~~~~~~~~~~~~-l-~~~~-~~~~~~~-~~~~~~~t~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~~~~~~~ 306 (406)
T 3cai_A 233 IGAMVFRDPSVMNS-F-GSVS-TNPYATG-PARLEIGVHQFGLLAGVVASIEYLAAL--DESARGSRRERLAVSMQSADA 306 (406)
T ss_dssp CEEEEESCHHHHHT-S-CCCC-SCTTCCG-GGGGCCSCCCHHHHHHHHHHHHHHHTS--STTCCSSHHHHHHHHHHHHHH
T ss_pred cCeEEEEehHHHhh-c-CCcc-cCCCCCc-cccccCCCccHHHHHHHHHHHHHHHHh--ccccccchhhhhhhhHHHHHH
Confidence 78 99998877664 2 2221 1122221 122335677777777777888887753 4 688899
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecc------cCCCCCC
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHY------QAPKDDG 399 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~------~~~~~~~ 399 (452)
+.+++++++.+.|.+++++++..+....+++++|.++ +.+..++.+.|.+ .||.+..+. ....
T Consensus 307 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~--- 375 (406)
T 3cai_A 307 YLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVH-------KVPADRVVQRLAD-NGILAIANTGSRVLDVLGV--- 375 (406)
T ss_dssp HHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEET-------TBCHHHHHHHHHH-TTEECEECCSCHHHHHHTT---
T ss_pred HHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEEC-------CcCHHHHHHHHHH-CCcEEecCChHHHHHHcCC---
Confidence 9999999999999987777776654334568888875 3457789999976 599997654 1100
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
....+++|++++.+++++|+++++++|+++
T Consensus 376 ----------~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 376 ----------NDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp ----------TTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred ----------CCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 012478999999999999999999999753
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=312.92 Aligned_cols=365 Identities=20% Similarity=0.238 Sum_probs=280.3
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHh-cCCchhhhhh-hhHHHHHHHHHHHhHhCCCCCCcEE
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFL-QQPDDFYFNS-LRKGILESRAAVKDLINADDVGEIS 102 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~i~ 102 (452)
.++++|++|+.. ++++||+.+..++.|+.+.+++.+.+.... .++..+..+. ..+...++++.+++++|++ +++++
T Consensus 3 ~~~~~r~~f~~~-~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~-~~~v~ 80 (390)
T 1elu_A 3 MITPSLHQFPGL-ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTIT 80 (390)
T ss_dssp -------CCGGG-TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEE
T ss_pred chHHHHHhcCCC-CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCC-HHHEE
Confidence 457889999965 678999999999999889999998876542 1222111222 2467899999999999985 67999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
+|+|||+|+.+++.++ .+++||+|+++.++|++...++..+++..|.+++.++.+. .+++.+ +++|++.+
T Consensus 81 ~~~g~t~a~~~~~~~~-------~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~i 151 (390)
T 1elu_A 81 ITDNVTTGCDIVLWGL-------DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAA--TLNQGDAAAVLANHL 151 (390)
T ss_dssp EESSHHHHHHHHHHHS-------CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGG--GSSSSCHHHHHHTTC
T ss_pred EeCChHHHHHHHHhCC-------CCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCC--CCCccchHHHHHHhc
Confidence 9999999999999976 2478999999999999988877666677899999995421 022333 88999888
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHHHHHHHHH----HcCCCEEEEecccccCCccccccccCccEEEEcCcccCcC
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR----DEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~----~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g 257 (452)
.+++++|++++++||||.+.|+++|.++|+ ++|+ ++|+|++|+.|..++++...++|+++.|+|||++|
T Consensus 152 ------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~-~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~ 224 (390)
T 1elu_A 152 ------GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPV-RVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAG 224 (390)
T ss_dssp ------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCC-EEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCC
T ss_pred ------CCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCc-EEEEEcccccCCcCCChhhcCCCEEEccccccccC
Confidence 568999999999999999999999999999 9999 79999999999888777777899999999999899
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCc--------c------cccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGL--------P------IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
+.|+|++++++++++. +.... .|++. + ...+..++++...+.++.++++.+... +.++.+
T Consensus 225 ~~g~G~~~~~~~~~~~-~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~-~~~~~~ 298 (390)
T 1elu_A 225 PAGVGGLYIHGDCLGE-INPTY----VGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQ-GTAEER 298 (390)
T ss_dssp CTTCEEEEECTTTGGG-CCCCS----CCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHH-CCHHHH
T ss_pred CCceEEEEECHHhHhh-cCCcc----ccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 9999999999888775 32211 11100 0 012234666666677777788877653 238999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
+++.+++++++.+.|.+++++++..|....++++++.++ .+.+..++.+.|.+ .||.+..+.
T Consensus 299 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~-~gi~v~~~~----------- 360 (390)
T 1elu_A 299 YQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD------SPLGHRAIVQKLEE-QRIYLRTIA----------- 360 (390)
T ss_dssp HHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC------SSSCHHHHHHHHHH-TTEECEEET-----------
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcC------CCCCHHHHHHHHHH-CCEEEEecC-----------
Confidence 999999999999999987788776543234678888775 24467789999966 599986543
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.++++|++++.+++++|+++++++|+++
T Consensus 361 --------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 --------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp --------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred --------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 1368999998889999999999999754
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=323.29 Aligned_cols=362 Identities=16% Similarity=0.179 Sum_probs=282.3
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhh---hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYF---NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
++++|||+++.++.|+.+.+++.+.+..+...+...+. ..+.+..+++++++++++|++ +++|++|+|+|++++++
T Consensus 66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~al~~~ 144 (465)
T 3e9k_A 66 ENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGAN-EKEIALMNALTVNLHLL 144 (465)
T ss_dssp CBCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCC-GGGEEECSCHHHHHHHH
T ss_pred CCeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCC-cCCEEEECCHHHHHHHH
Confidence 47899999999999998999988887665332222111 133455678999999999996 78999999999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEE--EeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVE--VQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~--~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
+.++.+ ...++++|+++.++|++...++..+++..|.++.. +.+. +.+.++.+ ++++++++++. ++++
T Consensus 145 ~~~~~~-----~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~-~~~~~~~~d~~~l~~~i~~~---~~~~ 215 (465)
T 3e9k_A 145 MLSFFK-----PTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIK-PREGEETLRIEDILEVIEKE---GDSI 215 (465)
T ss_dssp HHHHCC-----CCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEEC-CCTTCSSCCHHHHHHHHHHH---GGGE
T ss_pred HHHhcc-----ccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEe-cCCCCCccCHHHHHHHHHhc---CCCe
Confidence 998842 11345679999999999988888767888877521 1110 33333444 89999999642 2589
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCc-CCCCcEEEEEecCc
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFF-CPPSVAFLYCRKSI 270 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~-g~~G~G~l~~~~~~ 270 (452)
++|++++++|+||.+.|+++|.++|++||+ ++++|++|+.|..++++..+++|++++|+||+++ ||.|+|++++++++
T Consensus 216 ~lv~~~~~~n~tG~~~~l~~i~~la~~~g~-~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~ 294 (465)
T 3e9k_A 216 AVILFSGVHFYTGQHFNIPAITKAGQAKGC-YVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH 294 (465)
T ss_dssp EEEEEESBCTTTCBBCCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGG
T ss_pred EEEEEeCcccCcceeecHHHHHHHHHHcCC-EEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHH
Confidence 999999999999999999999999999999 8999999999999999888899999999999985 67778999999988
Q ss_pred cccCCCCCceeccCCCC--------------cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 271 LSSDMHHPVVSHEFGNG--------------LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+.. + .+....+++.. .....+..|+++...+.++.++++.+.+. |++.++++..++++++.+
T Consensus 295 ~~~-~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~--~~~~~~~~~~~~~~~l~~ 370 (465)
T 3e9k_A 295 AHT-I-KPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQA--TMKALRKKSVLLTGYLEY 370 (465)
T ss_dssp TTT-S-CCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHH
T ss_pred Hhh-c-CCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHH
Confidence 775 3 22221111110 11233456789999999999999999876 899999999999999999
Q ss_pred HHHHH----------cCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCC
Q 012991 337 MLANA----------WGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG 404 (452)
Q Consensus 337 ~L~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~ 404 (452)
.|.++ +++++..|.. .++++++|.++ .+..++.+.|.++ ||.+..
T Consensus 371 ~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~--------~~~~~l~~~L~~~-Gi~v~~-------------- 427 (465)
T 3e9k_A 371 LIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS--------VPNKDVFQELEKR-GVVCDK-------------- 427 (465)
T ss_dssp HHHHHCC---------CEEECSCSSGGGBCSCEEEEEC--------CTTCCHHHHHHTT-TEECEE--------------
T ss_pred HHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec--------CCHHHHHHHHHHC-CEEEec--------------
Confidence 99986 6888776642 34788888875 1345788888765 999851
Q ss_pred CCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHhcc
Q 012991 405 ARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 405 ~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
..++++|+|+ +.++|.+||++++++|+++++..
T Consensus 428 ------~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 428 ------RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp ------ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred ------CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 2247999998 89999999999999999999764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=309.93 Aligned_cols=379 Identities=21% Similarity=0.267 Sum_probs=288.0
Q ss_pred CHHHHHhhhccCCC-----CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCc---hhhhhhhhHHHHHHHHHHHhHhCCC
Q 012991 25 SEAEIRDEFSHHQH-----GVARINNGSFGSCPKSVLADQQKWQLKFLQQPD---DFYFNSLRKGILESRAAVKDLINAD 96 (452)
Q Consensus 25 ~~~~ir~~~~~~~~-----~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~ 96 (452)
-+..+|++||.... .++||+.+.+++.|+.+.+++.+.+.....+++ ..++....+...++++.++++++.+
T Consensus 9 ~~~~~r~~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~ 88 (420)
T 1t3i_A 9 LAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR 88 (420)
T ss_dssp HHHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCccccccCCCceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35889999997533 389999999998899999999998876543433 2233334678899999999999983
Q ss_pred CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HH
Q 012991 97 DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-IN 175 (452)
Q Consensus 97 ~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~ 175 (452)
+++++++|+|||+|+.+++.++.+. .+++|++|+++.++|++....+..++...|.+++.++. ++++.+ ++
T Consensus 89 ~~~~v~~~~g~t~a~~~~~~~~~~~----~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~~~~~~d~~ 160 (420)
T 1t3i_A 89 SPREIVYTRNATEAINLVAYSWGMN----NLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL----DEQESFDLE 160 (420)
T ss_dssp CGGGEEEESSHHHHHHHHHHHTHHH----HCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB----CTTSSBCHH
T ss_pred CCCeEEEcCChHHHHHHHHHHhhhc----ccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEecc----CCCCCcCHH
Confidence 2689999999999999999976210 04789999999999999766666556778999999954 333434 89
Q ss_pred HHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccC
Q 012991 176 EFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWF 255 (452)
Q Consensus 176 ~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l 255 (452)
++++++ .+++++|++++++||+|.+.|+++|.++|++||+ ++|+|++|+.|..+++....++|++++|+|| +
T Consensus 161 ~l~~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~di~~~s~sK-~ 232 (420)
T 1t3i_A 161 HFKTLL------SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGA-KVLVDACQSAPHYPLDVQLIDCDWLVASGHK-M 232 (420)
T ss_dssp HHHHHC------CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCSEEEEEGGG-T
T ss_pred HHHHhh------CCCceEEEEeCCcccccCcCCHHHHHHHHHHcCC-EEEEEhhhccCCccCchhhcCCCEEEEehhh-h
Confidence 999999 5689999999999999999999999999999999 7999999999887766666789999999999 6
Q ss_pred cCCCCcEEEEEecCccccCCCCCceeccCCCCc-------------ccccccccccCccccccHHHHHHHHHHhhcCHHH
Q 012991 256 FCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGL-------------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDG 322 (452)
Q Consensus 256 ~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~ 322 (452)
+|+.|+|++++++++++. + .+... ++.. ....+..++++....+++.++++++.+. +++.
T Consensus 233 ~~~~g~G~~~~~~~~~~~-~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~ 305 (420)
T 1t3i_A 233 CAPTGIGFLYGKEEILEA-M-PPFFG---GGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDL--GMEN 305 (420)
T ss_dssp TSCTTCEEEEECHHHHHH-S-CCCSC---STTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH--CHHH
T ss_pred cCCCceEEEEEchHHHhh-c-Cceec---CCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHh--HHHH
Confidence 888889999999887765 2 22211 1100 0011223566666666666678887754 7899
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCcc---cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWGTSLGSPPE---ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
+.++.+++++++.+.|.+++++++..+.. ..++++++.++ +.+..++.+.|.+ .||.+..+..+...
T Consensus 306 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~~~~~~~~-- 375 (420)
T 1t3i_A 306 IHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA-------GLHASDVATMVDQ-DGIAIRSGHHCTQP-- 375 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET-------TBCHHHHHHHHHT-TTEECBCSCTTCHH--
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEEC-------CCCHHHHHHHHHH-CCeEEeeccccchH--
Confidence 99999999999999999877877765542 23678888775 2456778888866 59999765432100
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.... ...++++|++++.+++++|+++++++|+++++.
T Consensus 376 -----~~~~-~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 376 -----LHRL-FDASGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp -----HHHH-TTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHh-cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 0000 011578999999989999999999999999864
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=308.18 Aligned_cols=357 Identities=15% Similarity=0.143 Sum_probs=275.8
Q ss_pred hhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 32 EFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.||.+ .+.+||+++++++.|+.+.+++.+.+.. .+.+...+..+++++++++++|++ ++++++|+|||+|+
T Consensus 2 ~fp~~-~~~~yl~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a~ 72 (392)
T 2z9v_A 2 RYPEH-ADPVITLTAGPVNAYPEVLRGLGRTVLY-------DYDPAFQLLYEKVVDKAQKAMRLS-NKPVILHGEPVLGL 72 (392)
T ss_dssp CCCTT-SCCSEECSSSCCCCCHHHHHHTTSCCCC-------TTSHHHHHHHHHHHHHHHHHTTCS-SCCEEESSCTHHHH
T ss_pred CcccC-CCcceeecCCCcCCCHHHHHHHhccccc-------cccHHHHHHHHHHHHHHHHHhCCC-CCEEEEeCCchHHH
Confidence 46755 4568999999999999999998775421 122345667899999999999996 78999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++ +++||+|++++++|++.. +..+++..|.+++.++++ .++.+ +++|++++++ +++
T Consensus 73 ~~~~~~~--------~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~----~~~ 134 (392)
T 2z9v_A 73 EAAAASL--------ISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVP----YNEAIDPQAVADMLKA----HPE 134 (392)
T ss_dssp HHHHHHH--------CCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECC----TTSCCCHHHHHHHHHH----CTT
T ss_pred HHHHHHh--------cCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCC----CCCCCCHHHHHHHHhc----CCC
Confidence 9999987 478999999999999863 434456679999999653 22334 8999999864 357
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
+++|++++++||||.+.|+++|.++|+++|+ ++|+|++|+.|..++++..+++|++++|+|||++|+.|+|++++++++
T Consensus 135 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~ 213 (392)
T 2z9v_A 135 ITVVSVCHHDTPSGTINPIDAIGALVSAHGA-YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERA 213 (392)
T ss_dssp CCEEEEESEEGGGTEECCHHHHHHHHHHTTC-EEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHH
T ss_pred CcEEEEeccCCCCceeccHHHHHHHHHHcCC-eEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHH
Confidence 8999999999999999999999999999999 799999999988877777778999999999998999999999999887
Q ss_pred cccCCCCCce--e-ccCCC-----CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 271 LSSDMHHPVV--S-HEFGN-----GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 271 ~~~~l~~~~~--~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
++. +..... . ..++. .........++++...+.++.++++.+.+. |++.++++.+++++++.+.|.++
T Consensus 214 ~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~l~~~L~~~- 289 (392)
T 2z9v_A 214 WAK-MKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNE--GPEAVWARHALTAKAMRAGVTAM- 289 (392)
T ss_dssp HHH-HHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHH-hhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHc-
Confidence 654 211000 0 00110 000112234667777777777888887764 78999999999999999999987
Q ss_pred CCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc
Q 012991 343 GTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420 (452)
Q Consensus 343 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 420 (452)
++++..++. ..++++++.++ .+.+..++.+.|.+++||.+..+..+ ..++++|+++
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~~gi~v~~g~~~----------------~~~~~lRi~~ 347 (392)
T 2z9v_A 290 GLSVWAASDSIASPTTTAVRTP------DGVDEKALRQAARARYGVVFSSGRGE----------------TLGKLTRIGH 347 (392)
T ss_dssp TCCBSSSSGGGBCTTEEEEECC------TTCCHHHHHHHHHHHHCEECEECCGG----------------GTTTEEEEEC
T ss_pred CCeeccCCccccCCceEEEECC------CCCCHHHHHHHHHhcCCEEEecCCCC----------------CCCCeEEEeC
Confidence 887766331 24677888886 24567789999976569999765432 2357999996
Q ss_pred cc-cCCHHHHHHHHHHHHHHHhc
Q 012991 421 QV-YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 421 ~~-~~t~~di~~l~~~l~~~~~~ 442 (452)
.. +++.+|+++++++|++++++
T Consensus 348 ~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 348 MGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHH
Confidence 44 78999999999999999864
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=305.13 Aligned_cols=366 Identities=17% Similarity=0.225 Sum_probs=279.4
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
++|||+++.++.|+.+.+++.+.+.....+++.. +.+...+..+++++++++++|++ ++++++|+|+|+|+.+++.+
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~~~a~~~~~~~ 79 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSHHHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEECCchHHHHHHHHH
Confidence 4799999999999999999999887655555432 34566788899999999999996 68899999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+.+.+ .++||+|++++++|+++...+..+ .+.|++++.+++ +.++.+ +++|++++ .+++++|++
T Consensus 80 ~~~~~----~~~gd~vi~~~~~~~~~~~~~~~~-~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~~~~v~~ 144 (382)
T 4hvk_A 80 YAMRN----ARKGKHILVSAVEHMSVINPAKFL-QKQGFEVEYIPV----GKYGEVDVSFIDQKL------RDDTILVSV 144 (382)
T ss_dssp HHHHH----GGGCCEEEEETTCCHHHHHHHHHH-HHTTCEEEEECB----CTTSCBCHHHHHHHC------CTTEEEEEC
T ss_pred hhhhh----cCCCCEEEECCCCcHHHHHHHHHH-HhcCCEEEEecc----CCCCCcCHHHHHHHh------ccCceEEEE
Confidence 73211 178999999999999998887764 667999999954 444444 89999999 578999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++||||.+.|+++|.++|++||+ +|+|++|+.|..+.+....++|++++|+||+ +|+.|+|+++++++...
T Consensus 145 ~~~~nptG~~~~~~~i~~l~~~~~~--li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~---- 217 (382)
T 4hvk_A 145 QHANNEIGTIQPVEEISEVLAGKAA--LHIDATASVGQIEVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKL---- 217 (382)
T ss_dssp CSBCTTTCBBCCHHHHHHHHSSSSE--EEEECTTTBTTBCCCHHHHTCSEEEEESGGG-TSCTTCEEEEEETTCCC----
T ss_pred ECCCCCceeeCCHHHHHHHHHHcCE--EEEEhHHhcCCCCCCchhcCCCEEEEeHHHh-cCCCceEEEEEcCccCc----
Confidence 9999999999999999999999998 8999999999888887777899999999995 88889999999887622
Q ss_pred CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc-ccc
Q 012991 277 HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI-CAA 355 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~ 355 (452)
.+.. .+... ......++++...+.++.+++++..+ +++.++++.+++++++.+.|.+++++++..++.. ..+
T Consensus 218 ~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 290 (382)
T 4hvk_A 218 QPVI---LGGGQ-ENGLRSGSENVPSIVGFGKAAEITAM---EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPN 290 (382)
T ss_dssp CCSS---CSSCT-GGGTSCSCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTT
T ss_pred Cccc---ccCCC-cCccccCCcCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCC
Confidence 1221 11111 12233467777777777777776654 6888999999999999999998878877665532 245
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC----ccceEEecccccCCHHHHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI----ITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~iRis~~~~~t~~di~~ 431 (452)
+++|.++ +.+..++.+.|.++ ||.+..+..+...+.. ........+. .++++|++++.++|.+|+++
T Consensus 291 ~~~~~~~-------~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~ 361 (382)
T 4hvk_A 291 NVNVRFS-------YIEGESIVLSLDMA-GIQASTGSACSSKTLQ-PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDR 361 (382)
T ss_dssp EEEEEET-------TCCHHHHHHHHHHT-TCBCBCC--------C-CCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHH
T ss_pred EEEEEEC-------CCCHHHHHHHHHHC-CEEEeeCCccCCCCCc-chHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHH
Confidence 7888775 45677899999764 9999766544221000 0000000000 15799999999999999999
Q ss_pred HHHHHHHHHhccc
Q 012991 432 FRDAVILLVEEGQ 444 (452)
Q Consensus 432 l~~~l~~~~~~~~ 444 (452)
++++|++++++-.
T Consensus 362 ~~~~l~~~~~~~~ 374 (382)
T 4hvk_A 362 LLEVLPGVIERLR 374 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=302.56 Aligned_cols=363 Identities=17% Similarity=0.222 Sum_probs=272.2
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
++|||.++.++.|+.|.+++.+.+.....++... .+....+..+++++++++++|++ ++++++|+|||+|+.+++.+
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~ 79 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEESSHHHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEcCchHHHHHHHHHH
Confidence 3799999999999999999999886543444432 23345678899999999999996 68999999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+...+ .++||+|++++++|+++...+.. +...|.+++.+++ +.++.+ +++|++++ .+++++|++
T Consensus 80 l~~~~----~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~~~~v~~ 144 (382)
T 4eb5_A 80 YAMRN----ARKGKHILVSAVEHMSVINPAKF-LQKQGFEVEYIPV----GKYGEVDVSFIDQKL------RDDTILVSV 144 (382)
T ss_dssp HHHHH----GGGCCEEEEETTCCHHHHHHHHH-HTTTTCEEEEECB----CTTSCBCHHHHHHHC------CTTEEEEEC
T ss_pred HHhhc----cCCCCEEEECCCcchHHHHHHHH-HHhCCcEEEEecc----CCCCccCHHHHHHHh------cCCCeEEEE
Confidence 73111 16899999999999998777765 3457999999954 333444 89999998 567999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc-cccCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI-LSSDM 275 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~-~~~~l 275 (452)
++++||||.+.|+++|.++|+++|+ + |+|++|+.|..++++..+++|++++|+||+ +|+.|+|+++++++. +..
T Consensus 145 ~~~~nptG~~~~l~~i~~l~~~~~~-~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~~-- 219 (382)
T 4eb5_A 145 QHANNEIGTIQPVEEISEVLAGKAA-L-HIDATASVGQIEVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQP-- 219 (382)
T ss_dssp CSBCTTTCBBCCHHHHHHHHTTSSE-E-EEECTTTBTTBCCCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCCC--
T ss_pred eccCCCccccCCHHHHHHHHHHCCC-E-EEEcchhcCCcccCccccCCCEEEeehHHh-cCCCceEEEEEccccccCc--
Confidence 9999999999999999999999999 9 999999988777666656789999999996 888899999998874 221
Q ss_pred CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc-cc
Q 012991 276 HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI-CA 354 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~ 354 (452)
.. .+... ......++++...+.++.++++++.+ +++.++++.+++++++.+.|.+++++++..++.. .+
T Consensus 220 ---~~---~~~~~-~~~~~~~~~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 289 (382)
T 4eb5_A 220 ---VI---LGGGQ-ENGLRSGSENVPSIVGFGKAAEITAM---EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLP 289 (382)
T ss_dssp ---SS---CSSCT-GGGTSCSCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCT
T ss_pred ---ee---cCCCc-cccccCCCccHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCC
Confidence 11 11100 11223356666666777777877665 5788899999999999999988777776655422 25
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC----CccceEEecccccCCHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG----IITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~iRis~~~~~t~~di~ 430 (452)
++++|.++ +.+..++.+.|.+ .||.+..+..+...... ........+ ...+++|++++.+++++|++
T Consensus 290 ~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~ 360 (382)
T 4eb5_A 290 NNVNVRFS-------YIEGESIVLSLDM-AGIQASTGSACSSKTLQ-PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVD 360 (382)
T ss_dssp TEEEEEET-------TSCHHHHHHHHHH-HTCBCBCCCGGGTSSCC-CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHH
T ss_pred CEEEEEeC-------CcCHHHHHHHHHH-CCEEEeccccccCCCCc-ccHHHHHcCCChhccCCeEEEECCCCCCHHHHH
Confidence 67888775 3456789999976 59998765432110000 000000001 12579999999889999999
Q ss_pred HHHHHHHHHHhc
Q 012991 431 KFRDAVILLVEE 442 (452)
Q Consensus 431 ~l~~~l~~~~~~ 442 (452)
+++++|++++++
T Consensus 361 ~~~~~l~~~~~~ 372 (382)
T 4eb5_A 361 RLLEVLPGVIER 372 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=300.96 Aligned_cols=361 Identities=17% Similarity=0.201 Sum_probs=277.4
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD--FYFNSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
.++..+|++||.. .+.+|||.++.++.|+.+.+++.+.+....+++.. .+.....+..+++++++++++|++ ++++
T Consensus 14 ~~~~~~r~~f~~~-~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v 91 (416)
T 1qz9_A 14 DSLAPLRQQFALP-EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEV 91 (416)
T ss_dssp CTTGGGGGGBCCC-TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSE
T ss_pred chhHHHHHhCCCC-CCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCC-cccE
Confidence 3567889999965 78999999999988888999999887643233322 222234577899999999999995 6899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCC----CCCCE-EEEeCCcchhHHHHHHHHHHhc--CcEEEEEeCCCCCCChHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRF----HRNDT-VLMLHCAFQAVKKSIQAYVTRA--GGSVVEVQLPFPLASEEEII 174 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~----~~g~~-Vl~~~~~~~s~~~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~ 174 (452)
++|+|+|+++..++.++. .+ ++||+ |+++.++|+++..++..+++.. |.+++.++ . +
T Consensus 92 ~~~~g~t~al~~al~~~~------~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~----~------~ 155 (416)
T 1qz9_A 92 VVTDTTSINLFKVLSAAL------RVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVD----S------P 155 (416)
T ss_dssp EECSCHHHHHHHHHHHHH------HHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEES----S------G
T ss_pred EEeCChhHHHHHHHHhhc------ccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeC----c------H
Confidence 999999999988888662 12 67776 5666779998888876656665 89999884 3 4
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCccc
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 254 (452)
++|++++ .+++++|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|..+.++..+++|++++|+||+
T Consensus 156 ~~l~~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~ 228 (416)
T 1qz9_A 156 EELPQAI------DQDTAVVMLTHVNYKTGYMHDMQALTALSHECGA-LAIWDLAHSAGAVPVDLHQAGADYAIGCTYKY 228 (416)
T ss_dssp GGHHHHC------STTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCHHHHTCSEEEECSSST
T ss_pred HHHHHHh------CCCceEEEEeccccCcccccCHHHHHHHHHHcCC-EEEEEccccccCcCCChhhcCCCEEEecCccc
Confidence 7788888 5689999999999999999999999999999999 79999999998887776666799999999999
Q ss_pred CcCCCCc-EEEEEecCccccCCCCCceeccCCCC--------c----ccccccccccCccccccHHHHHHHHHHhhcCHH
Q 012991 255 FFCPPSV-AFLYCRKSILSSDMHHPVVSHEFGNG--------L----PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID 321 (452)
Q Consensus 255 l~g~~G~-G~l~~~~~~~~~~l~~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~ 321 (452)
++++.|+ |++++++++++. + .+....+++.. . .......++++...++++.++++.+.+ .+++
T Consensus 229 l~~g~~~~g~l~~~~~~~~~-l-~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~ 304 (416)
T 1qz9_A 229 LNGGPGSQAFVWVSPQLCDL-V-PQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQ--TDMA 304 (416)
T ss_dssp TCCCTTCCCEEEECTTTTTT-S-CCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTT--SCHH
T ss_pred CCCCCCCeEEEEECHHHHhc-c-CCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHh--cCHH
Confidence 8777777 999999988765 2 22211111110 0 011223456777777777778887763 3889
Q ss_pred HHHHHHHHHHHHHHHHHHHH-c--CCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 322 GIMQRNHEQALKMARMLANA-W--GTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
.++++.+++++++.+.|.++ + ++.+..+.. ..++++++.++ +..++.+.|.++ ||.+..
T Consensus 305 ~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~~-gi~~~~------ 368 (416)
T 1qz9_A 305 SLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP---------EGYAVIQALIDR-GVIGDY------ 368 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT---------THHHHHHHHHTT-TEECEE------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC---------CHHHHHHHHHhC-CcEecc------
Confidence 99999999999999999886 5 777766542 23678888875 256788988765 998742
Q ss_pred CCCCCCCCCCCCCCCccceEEeccc-ccCCHHHHHHHHHHHHHHHhcc
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQ-VYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l~~~~~~~ 443 (452)
...+++|++++ .++|++|+++++++|++++++.
T Consensus 369 --------------~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 369 --------------REPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp --------------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred --------------CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 12469999998 4889999999999999998754
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=305.53 Aligned_cols=363 Identities=14% Similarity=0.124 Sum_probs=276.2
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCC-cEEE
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG-EISL 103 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~i~~ 103 (452)
+++..+++||.+..+.+|+++.++.+.|+.+.+++.+.+.. .+.....+...++++++++++|++ ++ ++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~-~~~~i~~ 75 (393)
T 2huf_A 4 KVTPPAVLREPLVTPNKLLMGPGPSNAPQRVLDAMSRPILG-------HLHPETLKIMDDIKEGVRYLFQTN-NIATFCL 75 (393)
T ss_dssp SSCCCGGGGSCCCCCCCEECSSSCCCCCHHHHHHTTSCCCC-------TTSHHHHHHHHHHHHHHHHHHTCC-CSEEEEE
T ss_pred cccchhhhhcccCCCCeEEecCCCCCCCHHHHHHHHhhhcc-------CCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEE
Confidence 34445668888777777777777777888899988764321 122234677899999999999996 44 8999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|||+|+.+++.++ +++||+|++++++|++.. +..+++..|.+++.++++ .++.+ +++|+++++
T Consensus 76 ~~g~t~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~i~ 141 (393)
T 2huf_A 76 SASGHGGMEATLCNL--------LEDGDVILIGHTGHWGDR--SADMATRYGADVRVVKSK----VGQSLSLDEIRDALL 141 (393)
T ss_dssp SSCHHHHHHHHHHHH--------CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECC----TTCCCCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHH--------hCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEEeCC----CCCCCCHHHHHHHHh
Confidence 999999999999987 478999999999998852 333356789999999753 22334 899999984
Q ss_pred ccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcE
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
+ .++++|++++++||||.+.|+++|.++|+++|+ ++|+|++++.|..++++..+++|++++|+||+++|+.|+|
T Consensus 142 ~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G 215 (393)
T 2huf_A 142 I-----HKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNC-LLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGIT 215 (393)
T ss_dssp H-----HCCSEEEEESEETTTTEECCCTTHHHHHHHTTC-EEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCE
T ss_pred c-----cCCcEEEEEccCCCccccCCHHHHHHHHHHcCC-EEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeE
Confidence 2 178999999999999999999999999999999 7999999999888777777789999999999989999999
Q ss_pred EEEEecCccccCCCCC---ceecc---------CCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 263 FLYCRKSILSSDMHHP---VVSHE---------FGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
++++++++++. +... ...+. ++.. ....+..++++...+.++.++++++.+. +++.++++.+++
T Consensus 216 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~ 291 (393)
T 2huf_A 216 PVSFSHRAVER-YKRRNTKVKVYYWDMSLVGDYWGCF-GRPRIYHHTISSTLLYGLREAIAMACEE--GLPALIARHEDC 291 (393)
T ss_dssp EEEECHHHHHH-HHTCSSCCSCGGGCHHHHHHHTTCS-SSCCCCSCCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHH
T ss_pred EEEECHHHHHH-HhhcCCCCceEEEchHHHHhhhccc-cccCCCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHHH
Confidence 99998877654 1110 00000 1110 0112234677777777777788887654 789999999999
Q ss_pred HHHHHHHHHHHcCCCcCCCccc-ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEI-CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
++++.+.|.++ ++++..++.. .+.++++.++ .+.+..++.+.|.+++||.+..+..+
T Consensus 292 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~~gi~v~~g~~~--------------- 349 (393)
T 2huf_A 292 AKRLYRGLQDA-GFELYADPKDRLSTVTTIKVP------QGVDWLKAAQYAMKTYLVEISGGLGP--------------- 349 (393)
T ss_dssp HHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECC------TTCCHHHHHHHHHHHHCEECBCCCGG---------------
T ss_pred HHHHHHHHHHc-CCeeccCccccCCcEEEEEcC------CCCCHHHHHHHHHHhCCEEEecCccc---------------
Confidence 99999999987 8887765432 2448888875 24567789998876569999755432
Q ss_pred CCccceEEeccccc-CCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVY-NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++.+ ++++|+++++++|+++++.
T Consensus 350 -~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 350 -TAGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp -GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred -ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 2357999999554 5789999999999999864
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=294.51 Aligned_cols=362 Identities=19% Similarity=0.240 Sum_probs=269.7
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHh
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDD--FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI 118 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l 118 (452)
+|||.++.++.|+.+.+++.+.+.....+++. .+++...+...++++++++++|++ ++++++|+|||+|+.+++.++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~~ 81 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATESINWILKTV 81 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHHHHHHHhh
Confidence 79999999999999999999987643233432 345666788999999999999986 689999999999999999987
Q ss_pred hcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEe
Q 012991 119 GRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 119 ~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
.+. ..++||+|+++.++|+++...+.. +...|.+++.++. +.++.+ +++|++++ .+++++|+++
T Consensus 82 ~~~----~~~~gd~vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~~~~v~~~ 146 (384)
T 1eg5_A 82 AET----FEKRKRTIITTPIEHKAVLETMKY-LSMKGFKVKYVPV----DSRGVVKLEELEKLV------DEDTFLVSIM 146 (384)
T ss_dssp HHH----TTTTCCEEEECTTSCHHHHHHHHH-HHHTTCEEEECCB----CTTSCBCHHHHHHHC------CTTEEEEEEE
T ss_pred hhh----ccCCCCEEEECCCCchHHHHHHHH-HHhcCCEEEEEcc----CCCCccCHHHHHHHh------CCCCeEEEEE
Confidence 311 026899999999999998777754 3567999998854 333434 89999998 5689999999
Q ss_pred ccCCCCcccccHHHHHHHHHHcC--CCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc-cccC
Q 012991 198 HITSMPCVVIPVRKLVKICRDEG--VDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI-LSSD 274 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~--~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~-~~~~ 274 (452)
+++||||.++|+++|.++|+++| + ++|+|++|+.|..++++..+++|++++|+||+ +|+.|+|++++++++ +..
T Consensus 147 ~~~nptG~~~~~~~i~~l~~~~~~~~-~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~-~g~~G~G~~~~~~~~~~~~- 223 (384)
T 1eg5_A 147 AANNEVGTIQPVEDVTRIVKKKNKET-LVHVDAVQTIGKIPFSLEKLEVDYASFSAHKF-HGPKGVGITYIRKGVPIRP- 223 (384)
T ss_dssp SBCTTTCBBCCHHHHHHHHHHHCTTC-EEEEECTTTTTTSCCCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTSCCCC-
T ss_pred CCCCCcccccCHHHHHHHHHhcCCce-EEEEEhhhhcCCcccCchhcCCCEEEecHHHh-cCCCceEEEEEcCCCcccc-
Confidence 99999999999999999999999 9 79999999988777777666799999999996 888889999998876 221
Q ss_pred CCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc-cc
Q 012991 275 MHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE-IC 353 (452)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~ 353 (452)
.+.. .+. ......++++...+.++.++++...+ +++.++++.+++++++.+.|.+ +++++..++. ..
T Consensus 224 ---~~~~--~~~---~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~ 291 (384)
T 1eg5_A 224 ---LIHG--GGQ---ERGLRSGTQNVPGIVGAARAMEIAVE---ELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISL 291 (384)
T ss_dssp ---SBCS--SCT---TTTTBCSCCCHHHHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBC
T ss_pred ---cccc--Ccc---cccccCCCCChHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCC
Confidence 1100 000 01122356666666677777776544 6888999999999999999988 5777665532 23
Q ss_pred cceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC----CccceEEecccccCCHHHH
Q 012991 354 AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG----IITGYARISHQVYNTLEDY 429 (452)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~iRis~~~~~t~~di 429 (452)
..+++|.++ +.+..++.+.|.+ +||.+..+..+...... .....+..+ ...+++|++++.+++++|+
T Consensus 292 ~~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 362 (384)
T 1eg5_A 292 PNTLSVSFP-------NIRGSTLQNLLSG-YGIYVSTSSACTSKDER-LRHVLDAMGVDRRIAQGAIRISLCKYNTEEEV 362 (384)
T ss_dssp TTEEEEECT-------TCCHHHHHHHHHH-TTEECBC-------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHH
T ss_pred CCEEEEEeC-------CCCHHHHHHHHhh-CCeEEeccccccCCCCc-chHHHHHcCCChhhcCCeEEEECCCCCCHHHH
Confidence 567788775 3356789999865 59999765433110000 000000000 1247999999988999999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
++++++|++++++
T Consensus 363 ~~~~~~l~~~~~~ 375 (384)
T 1eg5_A 363 DYFLKKIEEILSF 375 (384)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=300.97 Aligned_cols=363 Identities=16% Similarity=0.209 Sum_probs=277.9
Q ss_pred HHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecC
Q 012991 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDN 106 (452)
Q Consensus 27 ~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g 106 (452)
..+|++||.... .+||+++++++.|+.+.+++.+.+. ..++....+..+++++.+++++|+++++++++|+|
T Consensus 8 ~~~r~~f~~~~~-~~~l~~~~~~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g 79 (386)
T 2dr1_A 8 EAFKEVYEMVKP-KYKLFTAGPVACFPEVLEIMKVQMF-------SHRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSS 79 (386)
T ss_dssp HHHHHHHHHHSC-CSEECCSSSCCCCHHHHHHTTSCCC-------CTTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSC
T ss_pred HHHHHHHhhcCc-cceeecCCCcCCcHHHHHHHhcccc-------cccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence 668999996544 5799999999999989998876532 12233346788999999999999953467999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
||+|+.+++.++ +++||+|++++++|++.. +...+...|.+++.++.+ .++.+ +++|++++++
T Consensus 80 ~t~a~~~~~~~l--------~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~-- 143 (386)
T 2dr1_A 80 GTGIMEASIRNG--------VSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYE----PGKAVKPEDLDDALRK-- 143 (386)
T ss_dssp HHHHHHHHHHHH--------SCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECC----TTCCCCHHHHHHHHHH--
T ss_pred hHHHHHHHHHHh--------hcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecC----CCCCCCHHHHHHHHhc--
Confidence 999999999987 478999999999998841 333356679999999653 22333 8999999864
Q ss_pred cCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
++++++|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|..++++..+++|++++|+||+++++.|+|+++
T Consensus 144 --~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~ 220 (386)
T 2dr1_A 144 --NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDK-LVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGA 220 (386)
T ss_dssp --CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTC-EEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEE
T ss_pred --CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCC-eEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEE
Confidence 3678999999999999999999999999999999 7999999999887777777789999999999988787899999
Q ss_pred EecCccccCCCCCc-eeccCCCC---ccc--ccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 266 CRKSILSSDMHHPV-VSHEFGNG---LPI--ESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 266 ~~~~~~~~~l~~~~-~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
+++++++. +.... ..+.+... ... .....++++...+.++.++++.+.+ .+|++.++++.+++++++.+.|.
T Consensus 221 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~g~~~~~~~~~~~~~~~l~~~L~ 298 (386)
T 2dr1_A 221 FSERFLEI-AEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEK-MGGKEKWLEMYEKRAKMVREGVR 298 (386)
T ss_dssp ECHHHHHH-HTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHH-HhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHH
Confidence 99887664 21100 00000000 000 1123456666667777777877664 12688999999999999999999
Q ss_pred HHcCCCcCCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 340 NAWGTSLGSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 340 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
++ ++++..++. ..+.++++.++ .+.+..++.+.|.++ ||.+..+..+ ..++++|+
T Consensus 299 ~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~~~~~----------------~~~~~iRi 354 (386)
T 2dr1_A 299 EI-GLDILAEPGHESPTITAVLTP------PGIKGDEVYEAMRKR-GFELAKGYGS----------------VKEKTFRI 354 (386)
T ss_dssp HT-TCCBSSCTTCBCSSEEEEECC------TTCCHHHHHHHHHHT-TEECEECCGG----------------GTTTEEEE
T ss_pred Hc-CCeeCcCccccCCceEEEEcC------CCCCHHHHHHHHHHC-CeEEecCccc----------------cCCCEEEE
Confidence 88 887765532 23678888886 245677899999876 9999765532 23469999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++.+++++|+++++++|++++++
T Consensus 355 ~~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 355 GHMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999989999999999999998864
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=309.30 Aligned_cols=345 Identities=12% Similarity=0.045 Sum_probs=250.5
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-----hhhhhhHHHHHHHHHHHhHhCCCCCCcEEE-ecChhHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-----YFNSLRKGILESRAAVKDLINADDVGEISL-VDNATTAAAI 113 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~i~~-t~g~t~a~~~ 113 (452)
.+||+++++++.|++|++++..++..+.++|++. .+..+.+.++++|+.+++++|++++++|+| |+|+|+++++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 4799999999999999999998887766666542 235567789999999999999974457888 6899999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH-H-HHHHHHHHhccccCCCce
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE-I-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~-~~~l~~~i~~~~~~~~~~ 191 (452)
++.++ +++||+|++...++.+. .|...+++.| ++..++.+. .+.+. + ++++++++ .++|
T Consensus 107 ai~~l--------~~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~--~~~G~~~~~~~~~~~l------~~~t 167 (386)
T 3qm2_A 107 VPLNL--------LGDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKI--TVDGKRAVKPMREWQL------SDNA 167 (386)
T ss_dssp HHHHH--------CTTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEE--EETTEEEECCGGGCCC------CTTC
T ss_pred HHHhc--------cCCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCc--ccCCCCCCchHHHhhc------CCCC
Confidence 99987 47889988776666664 4655578888 899886420 02232 2 56666666 6789
Q ss_pred EEEEEeccCCCCccc-ccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 192 RLAIIDHITSMPCVV-IPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~-~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
++|+++|.+|.+|++ .|+++|. +|+ ++++|++|++|..++|++.++ ++++|+|||+ ||+|+|++++++++
T Consensus 168 ~lV~~~h~et~tG~~i~pi~~i~-----~g~-~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~l-GP~G~g~l~v~~~~ 238 (386)
T 3qm2_A 168 AYLHYCPNETIDGIAIDETPDFG-----PEV-VVTADFSSTILSAPLDVSRYG--VIYAGAQKNI-GPAGLTLVIVREDL 238 (386)
T ss_dssp SCEEECSEETTTTEECCCCCCCC-----TTC-CEEEECTTTTTSSCCCGGGCS--EEEEETTTTT-CCTTEEEEEEEGGG
T ss_pred cEEEEECCcCCcCEecCchhhhc-----CCC-EEEEEcccccCCCCCCccccC--EEEEeccccc-CCCccEEEEECHHH
Confidence 999999999999996 8999985 799 799999999999999999875 6779999986 89999999999998
Q ss_pred cccCCCCCceec--cCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcC
Q 012991 271 LSSDMHHPVVSH--EFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLG 347 (452)
Q Consensus 271 ~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~ 347 (452)
++. ..+.... +++.. .......+|+++..++++.++++++.+. +|++++.++.+++++++++.|.++ ++ ...
T Consensus 239 ~~~--~~~~~p~~~~~~~~-~~~~~~~gTp~v~~i~~l~~Al~~~~~~-gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~ 313 (386)
T 3qm2_A 239 LGK--AHESCPSILDYTVL-NDNDSMFNTPPTFAWYLSGLVFKWLKAQ-GGVAAMHKINQQKAELLYGVIDNS-DFYRND 313 (386)
T ss_dssp CSC--CCTTSCGGGCHHHH-HHC-------CCSHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHTC-SSEECC
T ss_pred Hhh--hcccCCcHHHHHHH-hhcCCCCCCCcHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence 875 2222110 01100 0112335799999999999999999863 479999999999999999999887 54 222
Q ss_pred CCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 348 SPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 348 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.++. ....++.|.+++ .+.+ ..+...|.+ +||.+..++.+ .+.+|+|+..++|.
T Consensus 314 ~~~~~rs~~iv~f~~~~-----~~~~-~~~~~~L~~-~gI~~~~g~~~------------------~~~iRiS~~~~~t~ 368 (386)
T 3qm2_A 314 VAQANRSRMNVPFQLAD-----NTLD-KVFLEESFA-AGLHALKGHRV------------------VGGMRASIYNAMPI 368 (386)
T ss_dssp BCGGGBCSSEEEEEESS-----GGGH-HHHHHHHHH-TTEECCBCCTT------------------TCSEEEECCTTSCH
T ss_pred CCHHHcCceEEEEECCC-----cccc-HHHHHHHHH-CCCEEeCCCCC------------------cCeEEEEcCCCCCH
Confidence 2232 334688998872 1345 567777865 59998765543 24599999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+||++++++|+++.++
T Consensus 369 edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 369 EGVKALTDFMIDFERR 384 (386)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=307.22 Aligned_cols=352 Identities=14% Similarity=0.071 Sum_probs=265.4
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-----hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe-cChhHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-----YFNSLRKGILESRAAVKDLINADDVGEISLV-DNATTAAAI 113 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t-~g~t~a~~~ 113 (452)
+--||.++..+.|++|++++.+.+..+.+++.+. .+..+.+.++++|+.+++++|++++.+|+|+ +|+|+++++
T Consensus 13 ~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 92 (377)
T 3e77_A 13 LGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSA 92 (377)
T ss_dssp --CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHH
Confidence 4568888999999999999999987766665442 3456788999999999999999744679995 799999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++.+ .++||+|++...++.+. .|..++++.|..++.++.++ ..+..++.++..+ ++++++
T Consensus 93 a~~~l~~------~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~---~~~~~~~~~~~~i------~~~t~l 155 (377)
T 3e77_A 93 VPLNLIG------LKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLG---SYTKIPDPSTWNL------NPDASY 155 (377)
T ss_dssp HHHHHGG------GSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCS---SSCSCCCGGGCCC------CTTCSC
T ss_pred HHHhccC------CCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCC---CcCCCCChHHhcc------CCCccE
Confidence 9998842 13489998887777664 45566788898777764321 1111144454445 678999
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCcccc
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSS 273 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~ 273 (452)
|.++|.+|.+|++.|+ +|+++|+ ++++|++|++|..++|++.++ ++++|+|||+ ||+|+|++++++++++.
T Consensus 156 V~~~h~et~tG~~~pi-----i~~~~~~-~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~-gp~G~g~l~~~~~~l~~ 226 (377)
T 3e77_A 156 VYYCANETVHGVEFDF-----IPDVKGA-VLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNV-GSAGVTVVIVRDDLLGF 226 (377)
T ss_dssp EEEESEETTTTEECSS-----CCCCTTC-CEEEECTTTTTSSCCCGGGCS--EEEEEGGGTT-SCTTCEEEEEETTSCSC
T ss_pred EEEeCccCchheEchh-----hhccCCC-EEEEEcccccCCCCCchhhcC--EEEEeccccc-CCCccEEEEEcHHHHhh
Confidence 9999999999999998 4788999 799999999999999999876 6889999986 89999999999999876
Q ss_pred CCCCCceeccCCCC-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCC-Ccc
Q 012991 274 DMHHPVVSHEFGNG-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGS-PPE 351 (452)
Q Consensus 274 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~ 351 (452)
..+......... ........+||++..++++.++++++.+. +|++++.++.+++++++++.|.+++|+.+.. ++.
T Consensus 227 --~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~-GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~ 303 (377)
T 3e77_A 227 --ALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNN-GGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQ 303 (377)
T ss_dssp --CCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGG
T ss_pred --ccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHH
Confidence 232211111000 00112345899999999999999999863 4799999999999999999999988876432 233
Q ss_pred ccc-ceEEEEcCCccccCChhhH-HHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 352 ICA-AMVMVGLPSRLRVMGEDDA-LRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 352 ~~~-~~~~~~~~~~~~~~~~~~~-~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
.++ .++.|.++.. ..+.+. ..+.+.|.+ +||.+..++.. .+.+|+|+..++|.+||
T Consensus 304 ~rs~~ivsf~~~~~---~~~~~~~~~~l~~l~~-~Gi~~~~g~~~------------------~g~iRiS~~~~~t~edI 361 (377)
T 3e77_A 304 NRSKMNIPFRIGNA---KGDDALEKRFLDKALE-LNMLSLKGHRS------------------VGGIRASLYNAVTIEDV 361 (377)
T ss_dssp GBCSSEEEEEESST---TCCHHHHHHHHHHHHH-TTEESCBCCTT------------------TCSEEEECCTTSCHHHH
T ss_pred HcCCcEEEEEcCCC---CCchhHHHHHHHHHHH-CCcEEeCCCCc------------------CCEEEEECCCCCCHHHH
Confidence 334 4688998721 101111 356677755 59998655432 34699999999999999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
++++++|+++.++
T Consensus 362 d~l~~al~~~~~~ 374 (377)
T 3e77_A 362 QKLAAFMKKFLEM 374 (377)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999865
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=302.73 Aligned_cols=372 Identities=16% Similarity=0.146 Sum_probs=259.2
Q ss_pred hccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHH
Q 012991 33 FSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTA 110 (452)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a 110 (452)
|+....+.+|||.++.++.|+.+.+++.+.+.....++... +.+...+..++++++++++++++ ++++++|+|+|+|
T Consensus 14 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~t~a 92 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE-PDELIFTSGATES 92 (400)
T ss_dssp --------CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC-GGGEEEESCHHHH
T ss_pred CCcccCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC-CCcEEEeCCHHHH
Confidence 45556789999999999999999999999987766666543 33455778899999999999996 7899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCC-EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRND-TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~-~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
+.+++.++.+. ..++|| +|+++.++|+++...+..+ ...|.+++.+++ +.++.+ +++|++++ .
T Consensus 93 l~~~~~~l~~~----~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~ 157 (400)
T 3vax_A 93 NNIALLGLAPY----GERTGRRHIITSAIEHKAVLEPLEHL-AGRGFEVDFLTP----GPSGRISVEGVMERL------R 157 (400)
T ss_dssp HHHHHHTTHHH----HHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCEEEEECC----CTTCCCCHHHHHTTC------C
T ss_pred HHHHHHHHHHh----hccCCCCEEEECccccHhHHHHHHHH-HhcCCeEEEEcc----CCCCCcCHHHHHHhc------C
Confidence 99999976210 016799 9999999999998888774 567999999954 434444 89999988 5
Q ss_pred CceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEE-Ee
Q 012991 189 KMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLY-CR 267 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~-~~ 267 (452)
+++++|++++++||||.+.|+++|.++|+++|+ ++|+|++|+.+..+.++... +|++++|+|| ++|+.|+|+++ ++
T Consensus 158 ~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~-~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K-~~g~~g~g~~~~~~ 234 (400)
T 3vax_A 158 PDTLLVSLMHVNNETGVIQPVAELAQQLRATPT-YLHVDAAQGYGKVPGDLTTP-IDMISISGHK-IGAPKGVGALVTRR 234 (400)
T ss_dssp TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSC-EEEEECTTTTTTSGGGGGSC-CSEEEEETGG-GTSCSSCEEEEECB
T ss_pred CCceEEEEECCCCCceeeCcHHHHHHHHHhcCC-EEEEEhhhhcCCCCcChhhc-CcEEEEeHHH-hCCCCceEEEEEec
Confidence 789999999999999999999999999999999 79999999999888887777 9999999999 68898999999 88
Q ss_pred cCcccc--CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 268 KSILSS--DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 268 ~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
++.+.. ....+.. .+... ......++++...+.++.++++.+.+ ++++++++.+++++++.+.|. .++++
T Consensus 235 ~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~-~~~~~ 306 (400)
T 3vax_A 235 REEMDDERVPLEPIM---FGGGQ-ERKLRPGTLPVPLIMGLAEAAKIFEA---EHAQWQVAAQDLRSRLLAGLA-STSFQ 306 (400)
T ss_dssp CSSSTTCBCCCCCSS---CSSCT-GGGTSCSCCCHHHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHHHHT-TTTCE
T ss_pred chhccccccccCcee---cCCCc-eeeeecCCCCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHhhC-CCCEE
Confidence 733220 0011111 11111 12233466777777777778887665 789999999999999999998 77888
Q ss_pred cCCCccc-ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC----ccceEEecc
Q 012991 346 LGSPPEI-CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI----ITGYARISH 420 (452)
Q Consensus 346 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~iRis~ 420 (452)
+..++.. .++++++.++ +.+..++.+.|. + ||.++.+..+...+.. ........+. .++++|+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~L~-~-gi~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRls~ 376 (400)
T 3vax_A 307 VNGDQDHVVPHILNLSFE-------DVDAEAFLVTLK-D-LVAVATGSASTSASFT-PSHVLRAMGLPEEAASKSLRFSW 376 (400)
T ss_dssp ECSCTTSBCTTEEEEECT-------TCCHHHHHHHHH-H-HHHHTTTTEEEEEEEC-CHHHHHTTTCCHHHHTSEEEEEE
T ss_pred EeCCcccCCCCEEEEEeC-------CCCHHHHHHHHh-c-CcEEEecccccCCCCC-ccHHHHHcCCCccccCceEEEEc
Confidence 7666532 3468888875 456778999997 4 9988654322110000 0000000011 148999999
Q ss_pred -cccCCHHHHHHHHHHHHHHHh
Q 012991 421 -QVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 421 -~~~~t~~di~~l~~~l~~~~~ 441 (452)
+..++++|+++++++|+++++
T Consensus 377 ~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 377 TPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp EEC-------------------
T ss_pred cCCCCCHHHHHHHHHHHHHHhc
Confidence 988999999999999998875
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=300.58 Aligned_cols=364 Identities=15% Similarity=0.174 Sum_probs=277.3
Q ss_pred CCCHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCC-cE
Q 012991 23 CISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG-EI 101 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~i 101 (452)
..+.+++|+.||....+.+|++++++.+.|+.+.+++.+.+.. .++....+..+++++.+++++|++ ++ ++
T Consensus 17 ~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~~~~~la~~~g~~-~~~~v 88 (393)
T 1vjo_A 17 ISINDNQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAMNVSPVG-------HLDPAFLALMDEIQSLLRYVWQTE-NPLTI 88 (393)
T ss_dssp CCCCCTTCCCCCSCCCCCCEECSSSCCCCCHHHHHHHSSCCCC-------TTSHHHHHHHHHHHHHHHHHHTCC-CSCEE
T ss_pred eeecchhhhcCCccCCccceeccCCCCCCCHHHHHHHhccccc-------ccCHHHHHHHHHHHHHHHHHhCCC-CCcEE
Confidence 3456778889987666678999999999999899998775421 233335677899999999999995 67 89
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++|+|||+|+..++.++ +++||+|++++++|++. .+...++..|.+++.++++ .++.+ +++|++.
T Consensus 89 ~~t~g~t~al~~~~~~~--------~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~ 154 (393)
T 1vjo_A 89 AVSGTGTAAMEATIANA--------VEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKP----WGEVFSLEELRTA 154 (393)
T ss_dssp EESSCHHHHHHHHHHHH--------CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECC----TTCCCCHHHHHHH
T ss_pred EEeCchHHHHHHHHHhc--------cCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEEecC----CCCCCCHHHHHHH
Confidence 99999999999999987 47899999999999882 2333356679999999653 23334 8999999
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+++ .++++|++++++||||.+.|+++|.++|+++|+ ++|+|++++.|..++++...++|++++|+||+++++.|
T Consensus 155 l~~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~ 228 (393)
T 1vjo_A 155 LET-----HRPAILALVHAETSTGARQPLEGVGELCREFGT-LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPG 228 (393)
T ss_dssp HHH-----HCCSEEEEESEETTTTEECCCTTHHHHHHHHTC-EEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSS
T ss_pred Hhh-----CCceEEEEeccCCCcceeccHHHHHHHHHHcCC-EEEEECCccccCcCCcccccCccEEEEcCcccccCCCc
Confidence 952 178899999999999999999999999999999 79999999988887787777899999999999888888
Q ss_pred cEEEEEecCccccCCCC---CceeccCCCC----c-ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHH---PVVSHEFGNG----L-PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~---~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
+|++++++++++. +.. ......++.. . .......++++...+.++.++++.+.+. +++.++++++++++
T Consensus 229 ~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~ 305 (393)
T 1vjo_A 229 ASPFTMSSRAIEK-LQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE--GLANCWQRHQKNVE 305 (393)
T ss_dssp CEEEEECHHHHHH-HHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHH-HhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHH
Confidence 9999999887654 100 0000001100 0 0001112366777777778888876543 78999999999999
Q ss_pred HHHHHHHHHcCCCcCCCccc-ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAWGTSLGSPPEI-CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
++.+.|.++ ++++..+... ...++++.++ .+.+..++.+.|.+++||.+..+..+ .
T Consensus 306 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~gi~v~~g~~~----------------~ 362 (393)
T 1vjo_A 306 YLWERLEDI-GLSLHVEKEYRLPTLTTVCIP------DGVDGKAVARRLLNEHNIEVGGGLGE----------------L 362 (393)
T ss_dssp HHHHHHHHT-TCCBSSCGGGBCSSEEEEECC------TTCCHHHHHHHHHHHHCEECEECCGG----------------G
T ss_pred HHHHHHHHc-CCcccCCccccCCcEEEEEcC------CCCCHHHHHHHHHhhCCEEEecCccc----------------c
Confidence 999999987 8887665431 2467888876 24567789999976569999766543 2
Q ss_pred ccceEEeccc-ccCCHHHHHHHHHHHHHHH
Q 012991 412 ITGYARISHQ-VYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 412 ~~~~iRis~~-~~~t~~di~~l~~~l~~~~ 440 (452)
.++++|+++. ..++++++++++++|++++
T Consensus 363 ~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 363 AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 3579999964 4456778999999999876
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=297.71 Aligned_cols=369 Identities=16% Similarity=0.173 Sum_probs=279.6
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHH--HHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQL--KFLQQPDD---FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
+..++|||.++.++.|+.+.+++.+.+. ....++.. .+.+...+..++++++++++++++ ++++++|+|||+|+
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggt~a~ 98 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGATESD 98 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHHHHH
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCChHHHH
Confidence 5789999999999999999999988765 33333432 244566778899999999999996 78999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++.+.+ .++||+|+++.++|+++...+..+ ...|.+++.++. +.++.+ +++|++++ .++
T Consensus 99 ~~a~~~l~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~ 163 (423)
T 3lvm_A 99 NLAIKGAANFY----QKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAP----QRNGIIDLKELEAAM------RDD 163 (423)
T ss_dssp HHHHHHHHHHH----TTTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECC----CTTSCCCHHHHHHHC------CTT
T ss_pred HHHHHHHHHhh----ccCCCEEEECCccchHHHHHHHHH-HHcCCEEEEecc----CCCCccCHHHHHHhc------CCC
Confidence 99999875321 247999999999999988888764 667999999954 434444 89999999 578
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
+++|++++++||||.+.|+++|.++|++||+ ++|+|++++.+..+.+....++|++++|+|| ++|+.|+|+++++++.
T Consensus 164 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~di~~~s~sK-~~g~~g~G~~~~~~~~ 241 (423)
T 3lvm_A 164 TILVSIMHVNNEIGVVQDIAAIGEMCRARGI-IYHVDATQSVGKLPIDLSQLKVDLMSFSGHK-IYGPKGIGALYVRRKP 241 (423)
T ss_dssp EEEEECCSBCTTTCBBCCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCTTTSCCSEEEEESTT-TTSCSSCEEEEECBTT
T ss_pred cEEEEEeCCCCCCccccCHHHHHHHHHHcCC-EEEEEhhhhcCCCCcChhhcCCCEEEechHH-hcCCCCeEEEEEeccc
Confidence 9999999999999999999999999999999 7999999999988888888889999999999 5888889999999887
Q ss_pred cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 012991 271 LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP 350 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 350 (452)
... + .+.. .+.+. ......++++...+.++.++++.+.. .++.++++.+++++++.+.|.+++++++..++
T Consensus 242 ~~~-~-~~~~---~~~~~-~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 312 (423)
T 3lvm_A 242 RVR-I-EAQM---HGGGH-ERGMRSGTLPVHQIVGMGEAYRIAKE---EMATEMERLRGLRNRLWNGIKDIEEVYLNGDL 312 (423)
T ss_dssp BCC-C-CCSS---CSSCT-TTTTCCSCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTSTTEEEESCS
T ss_pred cCC-C-Cccc---cCCcc-cccccCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCc
Confidence 765 2 2221 11111 11223466777777777777877765 37888999999999999999888787766554
Q ss_pred c-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC----CccceEEecccccCC
Q 012991 351 E-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG----IITGYARISHQVYNT 425 (452)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~iRis~~~~~t 425 (452)
. ...+++.|.++ +.+..++.+.|.+ |.+..+..+...+.. ........+ ..++++|++++..++
T Consensus 313 ~~~~~~~~~~~~~-------~~~~~~l~~~l~~---i~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRi~~~~~~t 381 (423)
T 3lvm_A 313 EHGAPNILNVSFN-------YVEGESLIMALKD---LAVSSGSACTSASLE-PSYVLRALGLNDELAHSSIRFSLGRFTT 381 (423)
T ss_dssp TTBCTTEEEEEET-------TSCHHHHHHHTTT---EECBCCCC-----CC-CCHHHHHHTCCHHHHHTEEEEECCTTCC
T ss_pred cccCCCeEEEEeC-------CCCHHHHHHHHhh---heeccCccccCCCcc-ccHHHHHhCCCccccCceEEEECCCCCC
Confidence 3 22457777774 4567788888853 777655433211000 000000000 115799999999899
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 012991 426 LEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~~ 443 (452)
++||++++++|++++++-
T Consensus 382 ~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 382 EEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998653
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=294.38 Aligned_cols=353 Identities=12% Similarity=0.085 Sum_probs=270.2
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
++..++.++++...++.+.+++.+.. ..++.....+..++++++++++++.+..+.+++++|||+|+.+++.+
T Consensus 11 ~~~~~~~~pgp~~~~~~v~~a~~~~~-------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~ 83 (411)
T 3nnk_A 11 PPSRLLMGPGPINADPRVLRAMSSQL-------IGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVS 83 (411)
T ss_dssp CCCCEEESSSCCCCCHHHHHHHTSCC-------CCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHH
T ss_pred CccceeecCCCCCCCHHHHHHhhccc-------cccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHH
Confidence 44446666667777777888887532 11122334577899999999999997333478899999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +++||+|++++++|++.. +...+...|.+++.++. +.++.+ +++|++++++ .++++|++
T Consensus 84 ~--------~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~----~~~~~~d~~~l~~~i~~-----~~~~~v~~ 144 (411)
T 3nnk_A 84 A--------IRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEV----PWGEVFTPDQVEDAVKR-----IRPRLLLT 144 (411)
T ss_dssp H--------CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEEC----CTTCCCCHHHHHHHHHH-----HCCSEEEE
T ss_pred h--------cCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEec----CCCCCCCHHHHHHHHhh-----CCCeEEEE
Confidence 7 589999999999998742 23335677999999965 333344 8999999952 37899999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++|+||.+.|+++|.++|++||+ ++|+|++++.+..+++....++|++++|+|||++|+.|+|++++++++++. +.
T Consensus 145 ~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~-~~ 222 (411)
T 3nnk_A 145 VQGDTSTTMLQPLAELGEICRRYDA-LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEA-IR 222 (411)
T ss_dssp ESEETTTTEECCCTTHHHHHHHHTC-EEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHH-HH
T ss_pred eCCCCCcceeccHHHHHHHHHHcCC-EEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHH-Hh
Confidence 9999999999999999999999999 799999999999888888888999999999998999999999999887654 11
Q ss_pred CC--ceeccCCCC------cc----------------cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 277 HP--VVSHEFGNG------LP----------------IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 277 ~~--~~~~~~~~~------~~----------------~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
.. ....+.|.. .. ......++++...+.++.++++.+.+. |++.++++.+++++
T Consensus 223 ~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~ 300 (411)
T 3nnk_A 223 RRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQE--GLDYGIARHKLHGD 300 (411)
T ss_dssp TTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHH
Confidence 10 000011110 00 112344677777778888888887765 89999999999999
Q ss_pred HHHHHHHHHcCCCcCCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAWGTSLGSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
++.+.|.++ ++++..++. ..+.++++.+| .+.+..++.+.|.+++||.++.+... .
T Consensus 301 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~gi~v~~g~~~----------------~ 357 (411)
T 3nnk_A 301 ALVKGIQAM-GLETFGDLKHKMNNVLGVVIP------QGINGDQARKLMLEDFGIEIGTSFGP----------------L 357 (411)
T ss_dssp HHHHHHHHT-TCCBCSCGGGBCSSEEEEECC------TTCCHHHHHHHHHHHHSEEEEECCGG----------------G
T ss_pred HHHHHHHHc-CCEeCCCcccccccEEEEECC------CCCCHHHHHHHHHHhcCeEEeCccCC----------------C
Confidence 999999987 887766543 34678888886 35577889999877679999765432 3
Q ss_pred ccceEEecc-cccCCHHHHHHHHHHHHHHHhcc
Q 012991 412 ITGYARISH-QVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 412 ~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.++++|+++ +..++++|+++++++|++++++.
T Consensus 358 ~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 358 HGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 357999998 65668999999999999998753
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=288.96 Aligned_cols=338 Identities=14% Similarity=0.117 Sum_probs=258.2
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 121 (452)
|+.++++.+.|+.+.+++.+.+.. .+.+...+...++++++++++|++ ++++++|+|||+|+.+++.++
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~--- 71 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH-------HRTEAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNL--- 71 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC-------TTSHHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHH---
T ss_pred ccccCCCCCCCHHHHHHhccCCCC-------ccCHHHHHHHHHHHHHHHHHhCCC-CceEEEcCchHHHHHHHHHhc---
Confidence 566677777788899998875421 122345667899999999999996 689999999999999999987
Q ss_pred cccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 122 ~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
+++||+|++++++|++.. +..+++..|.+++.++++. ++.+ ++++++ +++++|++++++
T Consensus 72 -----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~----~~~~d~~~l~~---------~~~~~v~~~~~~ 131 (352)
T 1iug_A 72 -----FAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPY----GDTPRPEDVAK---------EGYAGLLLVHSE 131 (352)
T ss_dssp -----CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCT----TCCCCTTTSCC---------SSCSEEEEESEE
T ss_pred -----cCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCC----CCCCCHHHHhc---------cCCcEEEEEEec
Confidence 478999999999999975 4333567899999997532 2222 343332 467899999999
Q ss_pred CCCcccccHHHHHHHHHHc--CCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCC
Q 012991 201 SMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHP 278 (452)
Q Consensus 201 n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~ 278 (452)
||||.+.|+++|.++|++| |+ ++|+|++|+.|..++++...++|++++|+|||++|+.|+|+++++++.++. + .+
T Consensus 132 nptG~~~~l~~i~~l~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~-~-~~ 208 (352)
T 1iug_A 132 TSTGALADLPALARAFKEKNPEG-LVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALER-L-KP 208 (352)
T ss_dssp TTTTEECCHHHHHHHHHHHCTTC-EEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHT-C-CC
T ss_pred CCcceecCHHHHHHHHHhhCCCC-EEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHH-h-hC
Confidence 9999999999999999999 99 799999999888877776678999999999998999999999998887654 2 11
Q ss_pred ceeccCCCC----cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc
Q 012991 279 VVSHEFGNG----LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354 (452)
Q Consensus 279 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 354 (452)
..+..+.. ........++++...+.++.++++.+.+ .++.++++++++++++.+.|.++ ++++..++ ..+
T Consensus 209 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~ 282 (352)
T 1iug_A 209 -RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP---RLEEHLALKAWQNALLYGVGEEG-GLRPVPKR-FSP 282 (352)
T ss_dssp -CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG---GHHHHHHHHHHHHHHHHHHHHHT-TCEESCSS-BCT
T ss_pred -CCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC-CCcccccc-cCC
Confidence 00000000 0001123456666666667777777654 37888999999999999999987 88776554 236
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRD 434 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~ 434 (452)
+++++.++ ++.+..++.+.|.++ ||.+..+..+ ..++++|++++.+++.+|++++++
T Consensus 283 ~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~ 339 (352)
T 1iug_A 283 AVAAFYLP------EGVPYARVKEAFAQR-GAVIAGGQGP----------------LKGKVFRLSLMGAYDRYEALGVAG 339 (352)
T ss_dssp TCEEEECC------TTCCHHHHHHHHHTT-TEECEECCGG----------------GTTTEEEECCCSSCCHHHHHHHHH
T ss_pred eEEEEEcC------CCCCHHHHHHHHHHC-CEEEEeCCCc----------------cCCCEEEEEccccCCHHHHHHHHH
Confidence 78888886 245677899999775 9999765532 235799999999889999999999
Q ss_pred HHHHHHhc
Q 012991 435 AVILLVEE 442 (452)
Q Consensus 435 ~l~~~~~~ 442 (452)
+|++++++
T Consensus 340 ~l~~~~~~ 347 (352)
T 1iug_A 340 MFREVLEE 347 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=292.09 Aligned_cols=342 Identities=14% Similarity=0.116 Sum_probs=260.4
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHHHHHHHHHhhc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-DVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
+|+ +++.+.|+.+.+++.+.+.. ++.+...+...++++++++++|.+ +++++++|+|||+|+.+++.++
T Consensus 3 ~~~-~gp~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~-- 72 (353)
T 2yrr_A 3 LLT-PGPTPIPERVQKALLRPMRG-------HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANL-- 72 (353)
T ss_dssp ECS-SSSCCCCHHHHGGGGSCCCC-------TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTC--
T ss_pred cCC-CCCCCCCHHHHHHHhccccc-------ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHh--
Confidence 444 44556677799988765421 122344577899999999999985 3578999999999999999865
Q ss_pred ccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEecc
Q 012991 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHI 199 (452)
Q Consensus 121 ~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~ 199 (452)
.+ |+|++++++|++. .+...++..|.+++.++.+ .++.+ ++++++.+++ .++++|+++++
T Consensus 73 ------~~--d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~-----~~~~~v~~~~~ 133 (353)
T 2yrr_A 73 ------DR--GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFP----PGEPVDPEAVARALKR-----RRYRMVALVHG 133 (353)
T ss_dssp ------SC--CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECC----TTSCCCHHHHHHHHHH-----SCCSEEEEESE
T ss_pred ------cC--CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCC----CCCCCCHHHHHHHHHh-----CCCCEEEEEcc
Confidence 23 8899999999986 3444467789999999653 23334 8999999953 17889999999
Q ss_pred CCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC-C
Q 012991 200 TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH-P 278 (452)
Q Consensus 200 ~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~-~ 278 (452)
+||||.+.|+++|.++|++||+ ++|+|++|+.|..+.++..+++|++++|+|||++|+.|+|++++++++++. +.. +
T Consensus 134 ~nptG~~~~~~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~-l~~~~ 211 (353)
T 2yrr_A 134 ETSTGVLNPAEAIGALAKEAGA-LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKA-FTGKR 211 (353)
T ss_dssp ETTTTEECCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHH-CCCCS
T ss_pred CCCcceecCHHHHHHHHHHcCC-eEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHH-hccCC
Confidence 9999999999999999999999 799999999887777766667899999999998999999999999887764 211 1
Q ss_pred ceeccCCC----CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc
Q 012991 279 VVSHEFGN----GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354 (452)
Q Consensus 279 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 354 (452)
. ..+.. +........++++...+.++.++++++.+. |++.++++.+++++++.+.|.++ ++++..++...+
T Consensus 212 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 286 (353)
T 2yrr_A 212 G--WYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEE--GVAARERRAREVYAWVLEELKAR-GFRPYPKASPLP 286 (353)
T ss_dssp C--STTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCT
T ss_pred C--ccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCC
Confidence 0 00000 000012234566766777777788887654 78999999999999999999987 887765542236
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHH-HHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYE-KFR 433 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~-~l~ 433 (452)
++++|.++ .+.+..++.+.|.++ ||.+..+..+ ..++++|++++.+++.+|++ +++
T Consensus 287 ~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~g~~~----------------~~~~~iRi~~~~~~~~~~~~~~~~ 343 (353)
T 2yrr_A 287 TVLVVRPP------EGVDADRLVRALYAE-GVAVAGGIGP----------------TRGQVLRLGLMGEGARREAYQAFL 343 (353)
T ss_dssp TEEEEECC------TTCCHHHHHHHHHHT-TEECEECCGG----------------GTTTCEEEECSGGGSCHHHHHHHH
T ss_pred eEEEEECC------CCCCHHHHHHHHHHC-CEEEeCCccc----------------cCCCeEEEecCccCCHHHHHHHHH
Confidence 67788886 245678899999775 9999766543 23468999998888999999 999
Q ss_pred HHHHHHHhc
Q 012991 434 DAVILLVEE 442 (452)
Q Consensus 434 ~~l~~~~~~ 442 (452)
++|++++++
T Consensus 344 ~~l~~~l~~ 352 (353)
T 2yrr_A 344 KALDRALAL 352 (353)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=292.72 Aligned_cols=356 Identities=13% Similarity=0.155 Sum_probs=267.9
Q ss_pred hhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCC-cEEEecChhHH
Q 012991 32 EFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG-EISLVDNATTA 110 (452)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~i~~t~g~t~a 110 (452)
.||.+..+.+++.+.++...++.+.+++.+.+. ..+...+.....++++.++++++.+ ++ ++++|+|||+|
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~a 81 (396)
T 2ch1_A 10 LRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTVL-------SNFHAELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAG 81 (396)
T ss_dssp GSSCCCCCCCBCCSSSSCCCCHHHHHHTTSCCC-------CTTCHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHH
T ss_pred cCCCCCCCcceeecCCCCCCCHHHHHHhccccc-------cCCChhHHHHHHHHHHHHHHHhCCC-CCcEEEECCcHHHH
Confidence 477666666666666677777878888876431 1122233456899999999999996 56 79999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++||+|++++++|++.. +...++..|.+++.++++ .++.+ ++++++++++ .
T Consensus 82 l~~~~~~~--------~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~-----~ 142 (396)
T 2ch1_A 82 MEAMLSNL--------LEEGDRVLIAVNGIWAER--AVEMSERYGADVRTIEGP----PDRPFSLETLARAIEL-----H 142 (396)
T ss_dssp HHHHHHHH--------CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECC----TTSCCCHHHHHHHHHH-----H
T ss_pred HHHHHHHh--------cCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEecCC----CCCCCCHHHHHHHHHh-----C
Confidence 99999987 478999999999999853 322357789999999653 23334 8999999852 1
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
++++|++++++||||.++|+++|.++|+++|+ ++|+|++++.|..++++..+++|+++.|+||+++++.|+|+++++++
T Consensus 143 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~ 221 (396)
T 2ch1_A 143 QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDC-LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPK 221 (396)
T ss_dssp CCSEEEEESEETTTTEECCCTTHHHHHHHTTC-EEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH
T ss_pred CCCEEEEECCCCCCceecCHHHHHHHHHHcCC-EEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHH
Confidence 68999999999999999999999999999999 79999999998888887777889999999999999999999999887
Q ss_pred ccccCCCC------Cce-ec-----cCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 270 ILSSDMHH------PVV-SH-----EFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 270 ~~~~~l~~------~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
+++. +.. +.. .. .++.. .......++++...+.++.++++.+.+. +++.++++++++++++.+.
T Consensus 222 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~ 297 (396)
T 2ch1_A 222 ALDV-IRNRRTKSKVFYWDLLLLGNYWGCY-DEPKRYHHTVASNLIFALREALAQIAEE--GLENQIKRRIECAQILYEG 297 (396)
T ss_dssp HHHH-HHTCSSCCSCGGGCHHHHHHHTTCS-SSCCCCCCCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-hhhccCcccceEechHHHHHhhhhh-cccCCCCCCCcHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH
Confidence 6654 111 000 00 01100 0012234566666777777788876543 7899999999999999999
Q ss_pred HHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 338 LANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 338 L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
|.++ ++++..+.. ..+.++++.++ .+.+..++.+.|.+++||.+..+..+ ..+++
T Consensus 298 L~~~-g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~~gi~v~~g~~~----------------~~~~~ 354 (396)
T 2ch1_A 298 LGKM-GLDIFVKDPRHRLPTVTGIMIP------KGVDWWKVSQYAMNNFSLEVQGGLGP----------------TFGKA 354 (396)
T ss_dssp HHHH-TCCBSSCSGGGBCTTEEEEECC------TTCCHHHHHHHHHHHHCBCCBCCCGG----------------GTTTE
T ss_pred HHHC-CCeeccCCccccCCceEEEEcC------CCCCHHHHHHHHHHhCCEEEecCccc----------------cCCCE
Confidence 9998 888766543 22457888886 34567889999876569998754432 23579
Q ss_pred EEeccc-ccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQ-VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~-~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|++++ ..++++|+++++++|+++++.
T Consensus 355 iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 355 WRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999994 456899999999999999864
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=289.57 Aligned_cols=349 Identities=14% Similarity=0.184 Sum_probs=264.9
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 121 (452)
++.++++...|+.+.+++.+... ..+.....+...+++++++++++.++.+++++|+|||+|+..++.++
T Consensus 25 ~~~~p~p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--- 94 (393)
T 3kgw_A 25 LLLGPGPSNLAPRVLAAGSLRMI-------GHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--- 94 (393)
T ss_dssp EECSSSCCCCCHHHHHHTTCCCC-------CTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH---
T ss_pred eeccCCCCCCCHHHHHHhccccc-------CcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc---
Confidence 55555666777778888865321 11223345678899999999999974446999999999999999987
Q ss_pred cccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 122 ~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
+++||+|+++.+.|++. .+...+...|.+++.++++ .++.+ +++|++++++ .++++|++++++
T Consensus 95 -----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~~~~~----~~~~~d~~~l~~~i~~-----~~~~~v~~~~~~ 158 (393)
T 3kgw_A 95 -----LEPGDSFLTGTNGIWGM--RAAEIADRIGARVHQMIKK----PGEHYTLQEVEEGLAQ-----HKPVLLFLVHGE 158 (393)
T ss_dssp -----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECC----TTCCCCHHHHHHHHHH-----HCCSEEEEESEE
T ss_pred -----CCCCCEEEEEeCCchhH--HHHHHHHHcCCceEEEeCC----CCCCCCHHHHHHHHhh-----CCCcEEEEeccC
Confidence 58999999998888643 2333367789999999653 22334 8999999952 278999999999
Q ss_pred CCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC---
Q 012991 201 SMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH--- 277 (452)
Q Consensus 201 n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~--- 277 (452)
||||.+.|+++|.++|++||+ ++|+|++++.|..+++....++|++++|+||+++|+.|+|++++++++++. +..
T Consensus 159 nptG~~~~l~~i~~l~~~~~~-~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~-~~~~~~ 236 (393)
T 3kgw_A 159 SSTGVVQPLDGFGELCHRYQC-LLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYK-VYSRKT 236 (393)
T ss_dssp TTTTEECCCTTHHHHHHHTTC-EEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHH-HHTCSS
T ss_pred CcchhhccHHHHHHHHHHcCC-EEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHH-HhccCC
Confidence 999999999999999999999 799999999888888887788999999999998899999999999887654 211
Q ss_pred Cceec---------cCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q 012991 278 PVVSH---------EFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGS 348 (452)
Q Consensus 278 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 348 (452)
+.... .++.. .....+.++++...+.++.++++...+. +++.+.++++++++++.+.|.++ ++++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 312 (393)
T 3kgw_A 237 KPVSFYTDITYLAKLWGCE-GETRVIHHTTPVTSLYCLRESLALIAEQ--GLENCWRRHREATAHLHKHLQEM-GLKFFV 312 (393)
T ss_dssp CCSCSTTCHHHHHHHTTCS-SSCCCCCCCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-TCCBSS
T ss_pred CCCceeecHHHHHHhhhhc-cccCCCCCCCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHc-CCeecc
Confidence 00000 01100 1122345677777777787888877764 89999999999999999999988 877654
Q ss_pred Cc-c-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc-cccCC
Q 012991 349 PP-E-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH-QVYNT 425 (452)
Q Consensus 349 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t 425 (452)
+. . ..+.++++.++ .+.+..++.+.|.+++||.+..+..+ ..++++|+++ +..+|
T Consensus 313 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~gi~v~~g~~~----------------~~~~~iRi~~~~~~~~ 370 (393)
T 3kgw_A 313 KDPEIRLPTITTVTVP------AGYNWRDIVSYVLDHFSIEISGGLGP----------------TEERVLRIGLLGYNAT 370 (393)
T ss_dssp SSGGGBCSSEEEEECC------TTBCHHHHHHHHHHHHCEECBCCCGG----------------GTTTEEEEECCGGGCC
T ss_pred CChhhcCCeEEEEeCC------CCCCHHHHHHHHHHhCCEEEeCCccc----------------CCCCEEEEEecccCCC
Confidence 32 2 22456678876 35577889999977569999765432 3357999998 54459
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 012991 426 LEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~~~ 444 (452)
++|+++++++|++++++-.
T Consensus 371 ~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 371 TENVDRVAEALREALQHCP 389 (393)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999997643
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=291.03 Aligned_cols=340 Identities=16% Similarity=0.174 Sum_probs=262.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCC--CcEEEecChhHHHHHHHHHhhcccc
Q 012991 46 GSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDV--GEISLVDNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~i~~t~g~t~a~~~~~~~l~~~~~ 123 (452)
+++.+.|+.+.+++.+.+. ..+.....+..++++++++++++++ . +++++|+|||+|+. ++.++
T Consensus 8 ~gp~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~v~~~~g~t~al~-~~~~~----- 73 (384)
T 3zrp_A 8 VGPTTIKEDVLVAGLENNV-------GFTSKEFVEALAYSLKGLRYVMGAS-KNYQPLIIPGGGTSAME-SVTSL----- 73 (384)
T ss_dssp SSCSCCCHHHHHHTTCCSC-------CTTSHHHHHHHHHHHHHHHHHHTCC-TTSEEEEEESCHHHHHH-HGGGG-----
T ss_pred CCCCCCCHHHHHHhhcccc-------ccccHHHHHHHHHHHHHHHHHhCCC-CCCcEEEEcCCcHHHHH-HHHhh-----
Confidence 3455666668888876432 1123344678899999999999996 5 78999999999999 87765
Q ss_pred cCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCC
Q 012991 124 EGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSM 202 (452)
Q Consensus 124 ~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~ 202 (452)
+++||+|+++++.|++. .+..++...|.+++.+++ +.++.+ ++++++++++ .++++|++++++||
T Consensus 74 ---~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~----~~~~~~d~~~l~~~i~~-----~~~~~v~~~~~~np 139 (384)
T 3zrp_A 74 ---LKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRP----SPGDYVKPGEVEEEVRK-----SEYKLVALTHVETS 139 (384)
T ss_dssp ---CCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECC----STTCCCCHHHHHHHHHH-----SCEEEEEEESEETT
T ss_pred ---cCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecC----CCCCCCCHHHHHHHHHh-----CCCcEEEEeCCCCC
Confidence 58999999999999874 344446778999999954 333444 8999999952 36999999999999
Q ss_pred CcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCcee-
Q 012991 203 PCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVS- 281 (452)
Q Consensus 203 tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~- 281 (452)
+|.+.|+++|.++|++||+ ++|+|++|+.+..+.+....++|++++|+||+++|+.|+|++++++++++. +..+...
T Consensus 140 tG~~~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~-~~~~~~~~ 217 (384)
T 3zrp_A 140 TGVREPVKDVINKIRKYVE-LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSI-LDSQNSIA 217 (384)
T ss_dssp TTEECCHHHHHHHHGGGEE-EEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHH-HHHCCCSC
T ss_pred CceECcHHHHHHHHHhcCC-EEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHH-hcCCCCCC
Confidence 9999999999999999999 799999999999888888888999999999998889999999999887654 1011000
Q ss_pred ccCCC-Cccc---------ccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-
Q 012991 282 HEFGN-GLPI---------ESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP- 350 (452)
Q Consensus 282 ~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 350 (452)
.++.. .... .....|+++...+.++.++++++... +++.++++.+++++++.+.|.++ ++++..++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 294 (384)
T 3zrp_A 218 GYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKE--GIENRIKRHTMVASAIRAGLEAL-GLEIVARRP 294 (384)
T ss_dssp CSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSG
T ss_pred cccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcc
Confidence 00000 0000 11112477777777788888887765 89999999999999999999998 88776655
Q ss_pred c-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 351 E-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
. ..+++++|.++ +.+..++.+.|.++ ||.+..+..+ .. +++|++++.++|++|+
T Consensus 295 ~~~~~~~~~~~~~-------~~~~~~~~~~l~~~-gi~v~~g~~~---------------~~--~~iRi~~~~~~~~e~i 349 (384)
T 3zrp_A 295 ESYSNTVTGVILK-------VADPQKVLAGTVNE-GVEFAPGVHP---------------AF--KYFRIGHMGWVTPNDA 349 (384)
T ss_dssp GGBCSSEEEEECS-------SSCHHHHHHHHHTT-TCCCEECCCT---------------TC--CEEEEECCSSCCHHHH
T ss_pred cccCccEEEEECC-------CCCHHHHHHHHHHC-CEEEecCCCC---------------Cc--CEEEEeccccCCHHHH
Confidence 2 23567788886 25678899999875 9998755432 11 7999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 012991 430 EKFRDAVILLVEEG 443 (452)
Q Consensus 430 ~~l~~~l~~~~~~~ 443 (452)
++++++|++++++-
T Consensus 350 ~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 350 IIAISVIERTLRKL 363 (384)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998753
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=290.33 Aligned_cols=348 Identities=15% Similarity=0.152 Sum_probs=265.6
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE-EecChhHHHHHHHHHh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS-LVDNATTAAAIVLQQI 118 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~-~t~g~t~a~~~~~~~l 118 (452)
.+++. .++...++.+.+++.+. ....+.....+..+++++++++++|++ .+.++ +++|+|+|+.+++.++
T Consensus 12 ~~~~~-p~p~~~~~~v~~a~~~~-------~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l 82 (416)
T 3isl_A 12 RTIMT-PGPVEVDPRVLRVMSTP-------VVGQFDPAFTGIMNETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASV 82 (416)
T ss_dssp CEECS-SSSCCCCHHHHHHTTSC-------CCCTTSHHHHHHHHHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHH
T ss_pred ceeec-CCCcCcCHHHHHHhccc-------CCCCccHHHHHHHHHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHh
Confidence 33444 44555666677776552 112233445678899999999999997 55555 8899999999999987
Q ss_pred hcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEe
Q 012991 119 GRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 119 ~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
+++||+|++++++|+++. +...++..|.+++.++++ .++.+ +++|++++++ +++++|+++
T Consensus 83 --------~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~i~~-----~~~~~v~~~ 143 (416)
T 3isl_A 83 --------IEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECE----WGTVFDPEDIIREIKK-----VKPKIVAMV 143 (416)
T ss_dssp --------CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECC----TTCCCCHHHHHHHHHH-----HCCSEEEEE
T ss_pred --------cCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecC----CCCCCCHHHHHHHHhh-----CCCcEEEEE
Confidence 589999999999998742 343467789999999653 33344 8999999952 478999999
Q ss_pred ccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC
Q 012991 198 HITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~ 277 (452)
+++||||.+.|+++|.++|++||+ ++|+|++|+.|..+++....++|++++|+|||++|+.|+|++++++++++. +..
T Consensus 144 ~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~-~~~ 221 (416)
T 3isl_A 144 HGETSTGRIHPLKAIGEACRTEDA-LFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADV-IAA 221 (416)
T ss_dssp SEETTTTEECCCHHHHHHHHHTTC-EEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHH-HHT
T ss_pred ccCCCCceecCHHHHHHHHHHcCC-EEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHH-hhc
Confidence 999999999999999999999999 799999999999888888888999999999999999999999999887654 111
Q ss_pred Cc---ee--------ccCCCCc---------------ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 278 PV---VS--------HEFGNGL---------------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 278 ~~---~~--------~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
.. .. ...|+.. ....+..++++...+.++.++++.+.+. |++.++++.++++
T Consensus 222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~ 299 (416)
T 3isl_A 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEE--GLETRFERHRHHE 299 (416)
T ss_dssp C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHH
T ss_pred cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence 00 00 0000000 0112235677777888888888888765 8999999999999
Q ss_pred HHHHHHHHHHcCCCcCCCccc-ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEI-CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
+++.+.|.+. ++++..++.. .+.++++.++ ++.+..++.+.|.+++||.+..+..+
T Consensus 300 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~~gi~v~~g~~~---------------- 356 (416)
T 3isl_A 300 AALAAGIKAM-GLRLFGDDSCKMPVVTCVEIP------GGIDGESVRDMLLAQFGIEIASSFGP---------------- 356 (416)
T ss_dssp HHHHHHHHHT-TCCBCSCGGGBCTTEEEEECC------TTCCHHHHHHHHHHHHCEECBCCCST----------------
T ss_pred HHHHHHHHHc-CCEeccCccccCCcEEEEeCC------CCCCHHHHHHHHHHhCCEEEecCCCC----------------
Confidence 9999999986 8887766542 3578888886 35577889999977569999765432
Q ss_pred CccceEEecccccCCHHH-HHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLED-YEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~d-i~~l~~~l~~~~~~ 442 (452)
..++++|++++.+++.+| +++++++|++++++
T Consensus 357 ~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 357 LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence 345799999977777777 99999999999875
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=289.69 Aligned_cols=342 Identities=12% Similarity=0.061 Sum_probs=252.4
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-----hhhhhhHHHHHHHHHHHhHhCCCCCCcEEE-ecChhHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-----YFNSLRKGILESRAAVKDLINADDVGEISL-VDNATTAAA 112 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~i~~-t~g~t~a~~ 112 (452)
++++|+ +++.+.|++|++++...+..+.+++.+. .+..+.+.++++|+.+++++|++++.+|+| |+|+|++++
T Consensus 5 ~~~~f~-pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n 83 (361)
T 3m5u_A 5 RKINFS-AGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFA 83 (361)
T ss_dssp CCEECC-SSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred ceEeec-CCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHH
Confidence 344444 5677888889999999877666666542 234667899999999999999974568888 999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH--H-HHHHHHHHhccccCCC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE--I-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~-~~~l~~~i~~~~~~~~ 189 (452)
+++.++ + +++++++....+.+. .|...+++.|++++.++.++ .+. . ++. + | .+
T Consensus 84 ~~~~~~--------~-~~~~~~~i~~~~~~~--~~~~~a~~~G~~v~~~~~~~----~g~~~~~~~~-~--l------~~ 139 (361)
T 3m5u_A 84 MIPMNL--------A-LNGVCEYANTGVWTK--KAIKEAQILGVNVKTVASSE----ESNFDHIPRV-E--F------SD 139 (361)
T ss_dssp HHHHHH--------C-CSSCEEEEECSHHHH--HHHHHHHHTTCCEEEEEECT----TTTSCSCCCC-C--C------CT
T ss_pred HHHHhc--------C-CCCeEEEEeCCHHHH--HHHHHHHHcCCceEEEeccc----CcCCCcCChh-h--c------CC
Confidence 999987 3 667553222223332 45555788899999996532 221 1 333 2 5 57
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
++++|.++|.+|.+|.+.|. +++ +|+ ++++|++|++|..++|+.. +|++++|+|||+ ||+|+|+++++++
T Consensus 140 ~t~lv~~~~~e~~tG~~~~~-----i~~-~~~-~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~-gp~G~g~l~~~~~ 209 (361)
T 3m5u_A 140 NADYAYICSNNTIYGTQYQN-----YPK-TKT-PLIVDASSDFFSRKVDFSN--IALFYGGVQKNA-GISGLSCIFIRKD 209 (361)
T ss_dssp TSSEEEEESEETTTTEECSS-----CCC-CSS-CEEEECGGGTTSSCCCCTT--EEEEEEETTTTS-SCTTCEEEEEEHH
T ss_pred CCCEEEEeCCCCCcceeCCc-----ccc-cCC-EEEEEcccccCCCCCCccc--CCEEEEechhcc-CCCccEEEEEcHH
Confidence 89999999999999999772 344 499 7999999999999999985 689999999986 8999999999998
Q ss_pred ccccCCCCC-ceeccCCCC-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-Cc
Q 012991 270 ILSSDMHHP-VVSHEFGNG-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SL 346 (452)
Q Consensus 270 ~~~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~ 346 (452)
+++. + .+ ......... ........+||++..++++.++++++.+. +|++++.++.+++++++++.|.+++++ .+
T Consensus 210 ~~~~-~-~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~-gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~ 286 (361)
T 3m5u_A 210 MLER-S-KNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQ-GGLDKVHEKNSQKATMLYECIDLSNGFYKG 286 (361)
T ss_dssp HHHH-H-HTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHHTSTTSEEE
T ss_pred HHhh-h-cCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHHHHHCCCeeec
Confidence 8754 1 11 110000000 00112334899999999999999999862 489999999999999999999998666 54
Q ss_pred CCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 347 GSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 347 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
..++. ....++.|.+|+. .+.+ .++...|.+ +||.+..++.. .+.+|+|++.++|
T Consensus 287 ~~~~~~rs~~ivsf~~~~~----~~~~-~~~~~~L~~-~gI~~~~g~~~------------------~g~iRiS~~~~~t 342 (361)
T 3m5u_A 287 HADKKDRSLMNVSFNIAKN----KDLE-PLFVKEAEE-AGMIGLKGHRI------------------LGGIRASIYNALN 342 (361)
T ss_dssp SSCGGGBCSSEEEEEESSC----TTHH-HHHHHHHHH-TTEECCBCCTT------------------TCSEEEECCTTSC
T ss_pred cCCHHHcCCeEEEEECCCc----hhhh-HHHHHHHHH-CCCEEecCCCc------------------cCeEEEEccCCCC
Confidence 43333 3346888988720 1244 467788865 59998655432 2469999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
.+||++++++|+++.++
T Consensus 343 ~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 343 LDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998864
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=282.21 Aligned_cols=379 Identities=16% Similarity=0.194 Sum_probs=267.3
Q ss_pred hhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhh--hhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChh
Q 012991 31 DEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFY--FNSLRKGILESRAAVKDLINADDVGEISLVDNAT 108 (452)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t 108 (452)
++|+.. ++.+|||.+..++.|+.+.+++.+.+.....+|+..+ +....+..+++++++++++|++ ++++++|+|+|
T Consensus 11 ~~~~~~-~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t 88 (432)
T 3a9z_A 11 SVESPP-NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGK-PQDIIFTSGGT 88 (432)
T ss_dssp --------CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHH
T ss_pred cccCCC-CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEeCChH
Confidence 347754 6789999999888899999999998866444554322 3345677899999999999995 68999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCC-------------CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-H
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRN-------------DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-I 174 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g-------------~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~ 174 (452)
+|+.+++.++.+.+.....++| ++|+++..+|+++..++..+++..|.+++.++++. +++.+ +
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~---~~~~~d~ 165 (432)
T 3a9z_A 89 ESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSK---VNGQVEV 165 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCT---TTSSCCH
T ss_pred HHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCc---ccCCcCH
Confidence 9999999987421100000244 47778888888988888887777899999996421 13334 8
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcC----------CCEEEEecccccCCccccccccCc
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEG----------VDQVFVDAAHAMGSIKIDVKEIGA 244 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~----------~~~~ivD~a~~~g~~~~~~~~~~~ 244 (452)
++|++++ .+++++|++++++||||.++|+++|.++|++++ + ++|+|++|+.|..++++...++
T Consensus 166 ~~l~~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~-~livDea~~~~~~~~~~~~~~~ 238 (432)
T 3a9z_A 166 EDILAAV------RPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRV-LVHTDAAQALGKRRVDVEDLGV 238 (432)
T ss_dssp HHHHHTC------CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCC-EEEEECTTTTTTSCCCHHHHCC
T ss_pred HHHHHhc------cCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCce-EEEEEchhhhCCcccChhhcCC
Confidence 9999988 568999999999999999999999999999999 9 7999999999887777666689
Q ss_pred cEEEEcCcccCcCCCCcEEEEEecCc-cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 245 DFYVSNLHKWFFCPPSVAFLYCRKSI-LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 245 d~~~~s~~K~l~g~~G~G~l~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
|++++|+||+ +|+. +|+++++++. ... + .+. .+++.. ......++++...+.++.++++++.+ +++++
T Consensus 239 d~~~~s~~K~-~g~~-~G~~~~~~~~~~~~-~-~~~---~~~~~~-~~~~~~~~~~~~~~~a~~aal~~~~~---~~~~~ 307 (432)
T 3a9z_A 239 DFLTIVGHKF-YGPR-IGALYVRGVGKLTP-L-YPM---LFGGGQ-ERNFRPGTENTPMIAGLGKAADLVSE---NCETY 307 (432)
T ss_dssp SEEEEEGGGT-TCCS-CEEEEETTBTTTBC-C-CCS---CCSSCG-GGGTSCSCCCHHHHHHHHHHHHHHHH---HHHHH
T ss_pred CEEEEehhHh-cCCc-ceEEEEccccccCC-c-Cce---eecCCc-cccccCCCcCHHHHHHHHHHHHHHHh---hHHHH
Confidence 9999999996 6777 8999998876 332 2 221 122211 12234467777777777778887765 67889
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcC--CC--c-ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLG--SP--P-EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD 398 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~ 398 (452)
+++.+++++++.+.|.+++++.+. .+ . ...+.++.|.+++. +.+..++.+.+ .+|.+..+..+...
T Consensus 308 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l---~~i~~~~G~~~~~~- 378 (432)
T 3a9z_A 308 EAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGS-----QLRGYMVLAQC---QTLLASVGASCHSD- 378 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECST-----TCCHHHHHHHC---SSEECBSSCGGGGG-
T ss_pred HHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCC-----CCcHHHHHHHh---cCeEEeccccccCC-
Confidence 999999999999999987665432 33 1 12245777777521 22455666655 26766543322110
Q ss_pred CCCCCC--CCCCCCC----ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 399 GQPQAG--ARDKDGI----ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 399 ~~~~~~--~~~~~~~----~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+... .....+. ..+++|++++.++|++|+++++++|+++++.
T Consensus 379 -~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 379 -HEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp -GTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 00000 0000011 2479999999999999999999999998764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=273.69 Aligned_cols=347 Identities=14% Similarity=0.123 Sum_probs=255.5
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhh-HHHHHHHHHHHhHhCCCC-CCcEEEecChhHHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLR-KGILESRAAVKDLINADD-VGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~~i~~t~g~t~a~~~~~~~ 117 (452)
++.++.+ +...|+.|.+++.+.+ . ..+ ..+. +...++++++++++|.++ .+++++|+|||+|+.+++.+
T Consensus 5 ~~~~~~g-p~~~~~~v~~a~~~~~----~---~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG-PLTTSRTVKEAMLFDS----C---TWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS-SCCCCHHHHHTTCCCC----C---TTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC-CcCCCHHHHHHHhhhh----c---CCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 5677777 4456777999887632 1 111 1122 668899999999999431 24799999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeC-CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLH-CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
+ .++||+|++.+ +.|++.. ...+...|.+++.++++ .++.+ +++|++++++ ..++++|+
T Consensus 76 ~--------~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~----~~~~~~v~ 136 (366)
T 1m32_A 76 A--------LGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCG----EVARPDVQAIDAILNA----DPTISHIA 136 (366)
T ss_dssp S--------CCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECC----TTSCCCHHHHHHHHHH----CTTCCEEE
T ss_pred h--------cCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCC----CCCCCCHHHHHHHHhc----CCCeEEEE
Confidence 6 46888887665 6666532 22245669999999653 23334 8899999864 23688999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
+++++||||.+.|+++|.++|++||+ ++|+|++|+.+..++++..+++|++++|+||+++|+.|+|++++++++++. +
T Consensus 137 ~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~-~ 214 (366)
T 1m32_A 137 MVHSETTTGMLNPIDEVGALAHRYGK-TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAA-C 214 (366)
T ss_dssp EESEETTTTEECCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTT-C
T ss_pred EecccCCcceecCHHHHHHHHHHcCC-EEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHh-h
Confidence 99999999999999999999999999 799999999988877777678999999999998899999999999988765 2
Q ss_pred CCCceeccCCCCcccc------cccccccCccccccHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q 012991 276 HHPVVSHEFGNGLPIE------SAWIGTRDYSAQLVIPSAVTFVSRFEGG-IDGIMQRNHEQALKMARMLANAWGTSLGS 348 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~al~~~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 348 (452)
........+....... ....++++...+.++.++++.+.+. | ++.++++.+++++++.+.|.++ ++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 291 (366)
T 1m32_A 215 KGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKE--GGVAARHQRYQQNQRSLVAGMRAL-GFNTLL 291 (366)
T ss_dssp TTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHT-TCCBSS
T ss_pred cCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHc--cCHhHHHHHHHHHHHHHHHHHHHC-CCeecc
Confidence 2110000000000000 0012456666667777888887764 6 8889999999999999999987 777765
Q ss_pred Ccc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 349 PPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 349 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
++. ..+.++++.+++. .+.+..++.+.|.++ ||.+..+..+ ..+++|++++.+++++
T Consensus 292 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~-gi~v~~~~~~-----------------~~~~iRi~~~~~~~~~ 349 (366)
T 1m32_A 292 DDELHSPIITAFYSPED----PQYRFSEFYRRLKEQ-GFVIYPGKVS-----------------QSDCFRIGNIGEVYAA 349 (366)
T ss_dssp CGGGBCSSEEEEECCCC----TTCCHHHHHHHHHHT-TEECEECCCS-----------------SSCEEEEECCSSCCHH
T ss_pred CchhcCceEEEEEcCcc----CCCCHHHHHHHHHHC-CEEEECCcCC-----------------CCCEEEEecCCCCCHH
Confidence 532 2245888888620 034677899999775 9999765432 2479999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 012991 428 DYEKFRDAVILLVE 441 (452)
Q Consensus 428 di~~l~~~l~~~~~ 441 (452)
|+++++++|+++++
T Consensus 350 ~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 350 DITALLTAIRTAMY 363 (366)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=278.83 Aligned_cols=340 Identities=11% Similarity=0.080 Sum_probs=254.0
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
.++++.+ +...|+.+.+++.+.+..... ...+....+.+..+++++.+++++|.++++++++|+|+|+|+.+++.++
T Consensus 5 ~~~~~p~-p~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l- 81 (362)
T 3ffr_A 5 KIYFTPG-PSELYPTVRQHMITALDEKIG-VISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC- 81 (362)
T ss_dssp CEEECSS-SCCCCTTHHHHHHHHHHTTTT-TSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHH-
T ss_pred ceeccCC-CcCCCHHHHHHHHHHhcCCcc-CcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhc-
Confidence 4455544 555566688888776643210 0112234456788999999999999865678999999999999999987
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
.++ ++++..+.|++. .+..++...|++++.++.+ .++.+ +++++ + ++++++|++++
T Consensus 82 -------~~~--~~i~~~~~~~~~--~~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~--~------~~~~~~v~~~~ 138 (362)
T 3ffr_A 82 -------VEK--KSFHCVNGSFSK--RFYEFAGELGREAYKEEAA----FGKGFYPADIT--V------PADAEIICLTH 138 (362)
T ss_dssp -------CSS--EEEEEECSHHHH--HHHHHHHHTTCEEEEEECC----TTCCCCGGGCC--C------CTTCCEEEEES
T ss_pred -------cCC--cEEEEcCcHHHH--HHHHHHHHhCCCeEEEecC----CCCCCCHHHHh--c------cCCccEEEEEc
Confidence 344 666555555542 3333467789999999653 22223 56666 4 68899999999
Q ss_pred cCCCCcccccHHHHHHHHHHc-CCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC
Q 012991 199 ITSMPCVVIPVRKLVKICRDE-GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l~~~~-~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~ 277 (452)
++||||.++|+++|.++|++| |+ ++|+|++++.+..+.+... +|++++|+||+++++.|+|++++++++++. + .
T Consensus 139 ~~nptG~~~~l~~i~~la~~~p~~-~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~-~-~ 213 (362)
T 3ffr_A 139 NETSSGVSMPVEDINTFRDKNKDA-LIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEK-S-K 213 (362)
T ss_dssp EETTTTEECCHHHHTTSGGGSTTS-EEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHH-H-H
T ss_pred CCCCcceeCCHHHHHHHHHhCCCC-EEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHH-h-h
Confidence 999999999999999999999 99 7999999999988777654 899999999997779999999999887664 1 1
Q ss_pred CceeccCCCCc-----c--------cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 278 PVVSHEFGNGL-----P--------IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 278 ~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
+... |++. . ......++++...+.++.++++++... |++.+.++.+++++++.+.|.+++++
T Consensus 214 ~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~ 288 (362)
T 3ffr_A 214 ALLA---KRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQI--SADGIRKQTEEKAALINTYIESSKVF 288 (362)
T ss_dssp HHHH---TTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred hccc---cCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 1110 0000 0 001124677777777888888887764 78999999999999999999998888
Q ss_pred CcCCCc--ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 345 SLGSPP--EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 345 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
++..+. .....+++|.++ + +..++.+.|.++ ||.+..++.+ ..++++|+|++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~l~~~-gi~~~~g~~~----------------~~~~~iRis~~~ 343 (362)
T 3ffr_A 289 SFGVEDAKLRSMTTIVANTT-------M-LPGEINKILEPF-DMAVGAGYGS----------------KKETQIRIANFP 343 (362)
T ss_dssp EESSSCGGGBCSSEEEEEES-------S-CHHHHHHHHGGG-TEEEEECSGG----------------GTTTEEEEECCT
T ss_pred eeccCChhhcCCceEEEecC-------C-CHHHHHHHHHHC-CeEEecCccc----------------cCCCEEEEECCC
Confidence 776532 223667888886 2 678899999876 9999866543 335799999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 012991 423 YNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~ 440 (452)
+++++|+++++++|+++.
T Consensus 344 ~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 344 AHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999875
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=273.94 Aligned_cols=342 Identities=17% Similarity=0.114 Sum_probs=253.6
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhc
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
.|++.+...+.| .+.+++.+.+.....++.. .....+..++++++++++++++ ++++++|+|||+|+.+++.++..
T Consensus 33 ~~~~~~~~~~~~-~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~-~~~i~~~~ggt~a~~~~~~~~~~ 108 (397)
T 3f9t_A 33 NIFGSMCSNVLP-ITRKIVDIFLETNLGDPGL--FKGTKLLEEKAVALLGSLLNNK-DAYGHIVSGGTEANLMALRCIKN 108 (397)
T ss_dssp CBCSCSCCCCCT-HHHHHHHHHTTCCTTSGGG--BHHHHHHHHHHHHHHHHHTTCT-TCEEEEESCHHHHHHHHHHHHHH
T ss_pred CeEEEecCCCcH-HHHHHHHHHHhhcCCCccc--ChhHHHHHHHHHHHHHHHhCCC-CCCEEEecCcHHHHHHHHHHHHH
Confidence 467766555555 4888888876532222221 1245677889999999999996 78999999999999999998853
Q ss_pred ccc-----cCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 121 GFT-----EGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 121 ~~~-----~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.+. .....+||+|+++.++|++....+.. .|.+++.++. +.++.+ +++|++++++ .++++|
T Consensus 109 ~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~----~~~~~~d~~~l~~~i~~-----~~~~~v 175 (397)
T 3f9t_A 109 IWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM----MDLEYIYAPI----KEDYTIDEKFVKDAVED-----YDVDGI 175 (397)
T ss_dssp HHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH----HTCEEEEECB----CTTSSBCHHHHHHHHHH-----SCCCEE
T ss_pred HHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH----cCceeEEEee----CCCCcCCHHHHHHHHhh-----cCCeEE
Confidence 210 00113589999999999997766644 4999999954 444444 8999999952 278999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc--------------cccccccCccEEEEcCcccCcCCCC
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI--------------KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~--------------~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
++++++||||.+.|+++|.++|++||+ ++|+|++|+.+.. ++++.. ++|++++|+||+++++.+
T Consensus 176 ~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~ 253 (397)
T 3f9t_A 176 IGIAGTTELGTIDNIEELSKIAKENNI-YIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIP 253 (397)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSS
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHhCC-eEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCC
Confidence 999999999999999999999999999 7999999986543 344445 789999999998777878
Q ss_pred cEEEEEecCccccCCC--CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMH--HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|+++++++.+...+. .++. .+. ......++++.....++.+++..+... +++...++.+++++++.+.|
T Consensus 254 ~g~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~L 325 (397)
T 3f9t_A 254 SGGILFKDIGYKRYLDVDAPYL---TET---RQATILGTRVGFGGACTYAVLRYLGRE--GQRKIVNECMENTLYLYKKL 325 (397)
T ss_dssp CEEEEESSGGGGGGTCEECTTS---SSS---EECSSCSSCCSHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCHHHHHhhccCCccc---cCC---CccccccccccchHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999887765443110 1111 111 011223455555666677777776643 78889999999999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.++ ++.+..++. ++++++..+ +..++.+.|.++ ||.+..+. .++++|+
T Consensus 326 ~~~-g~~~~~~~~--~~~~~~~~~---------~~~~~~~~l~~~-gi~v~~~~-------------------~~~~~Ri 373 (397)
T 3f9t_A 326 KEN-NFKPVIEPI--LNIVAIEDE---------DYKEVCKKLRDR-GIYVSVCN-------------------CVKALRI 373 (397)
T ss_dssp HHT-TCCBSSCCS--SSEEEEECT---------THHHHHHHHHHT-TCBCEECS-------------------SSSEEEE
T ss_pred HHC-CCEEEcCCC--ccEEEEEeC---------CHHHHHHHHHhC-CeEEeccC-------------------CCCEEEE
Confidence 998 887665543 678888775 256888999775 99886432 2479999
Q ss_pred cccccCCHHHHHHHHHHHHHHHh
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+++.++|++|+++++++|+++++
T Consensus 374 ~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 374 VVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEcCCCCHHHHHHHHHHHHHhhC
Confidence 99988999999999999998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=279.01 Aligned_cols=349 Identities=15% Similarity=0.140 Sum_probs=252.2
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE-EecChhHHHHHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS-LVDNATTAAAIVLQQ 117 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~-~t~g~t~a~~~~~~~ 117 (452)
.+.+|+.+ +.+.|+.+.+++.+.+. .++.....+..+++++++++++|++...+++ +|+|||+|+.+++.+
T Consensus 19 ~~~~~~pg-p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~ 90 (376)
T 3f0h_A 19 GMLNFTVG-PVMSSEEVRAIGAEQVP-------YFRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMN 90 (376)
T ss_dssp SCEECSSS-SCCCCHHHHHHHTSCCC-------CCSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHH
T ss_pred CceeecCC-CCCCcHHHHHHhcCCCC-------CCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHh
Confidence 34555544 55666678888876431 1122334577899999999999996333555 588999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +++||+|+++++.|++.. +...+...|.++..++.+ .++.+ ++++++.+ ++++++|++
T Consensus 91 ~--------~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~~------~~~~~~v~~ 150 (376)
T 3f0h_A 91 C--------FTKKDKVLVIDGGSFGHR--FVQLCEIHEIPYVALKLE----HGKKLTKEKLYEYD------NQNFTGLLV 150 (376)
T ss_dssp H--------CCTTCCEEEEESSHHHHH--HHHHHHHTTCCEEEEECC----TTCCCCHHHHHTTT------TSCCCEEEE
T ss_pred c--------cCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCC----CCCCCCHHHHHHhh------ccCceEEEE
Confidence 7 489999999988777643 223357779999998653 22333 78888876 578999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++||||.++|+++|.++|++||+ ++|+|++++.+..++++...++|++++|+||+++++.|+|++++++++++. +.
T Consensus 151 ~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~-~~ 228 (376)
T 3f0h_A 151 NVDETSTAVLYDTMMIGEFCKKNNM-FFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVER-VE 228 (376)
T ss_dssp ESEETTTTEECCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHH-HH
T ss_pred ecccCCcceecCHHHHHHHHHHcCC-EEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHH-hh
Confidence 9999999999999999999999999 799999999998888777778999999999998779999999999887664 21
Q ss_pred CCceeccCCC-Ccc----cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc
Q 012991 277 HPVVSHEFGN-GLP----IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE 351 (452)
Q Consensus 277 ~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 351 (452)
.......+.. ... .......+++...++++.++++++.+. ++++.++++.+++++++.+.|.++ ++++..+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 306 (376)
T 3f0h_A 229 KSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKH-GGADAEVARIASQAADFRAKIKDL-PFELVSESP 306 (376)
T ss_dssp TCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSB
T ss_pred cCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHc-CCccCcccc
Confidence 1100000000 000 000112344444446677788877752 258889999999999999999876 565554332
Q ss_pred cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHH
Q 012991 352 ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 431 (452)
...++.+.. .+.+..++.+.|.+++||.++.+... ..++++|++++.++|++|+++
T Consensus 307 -~~~~~~~~~-------~~~~~~~l~~~l~~~~gi~v~~g~~~----------------~~~~~lRis~~~~~t~e~i~~ 362 (376)
T 3f0h_A 307 -ANGVTSVHP-------TTANAYDIFLKLKDEYGIWICPNGGE----------------MKDTIFRVGHIGALTHEDNTT 362 (376)
T ss_dssp -BTTEEEEEE-------SSSCHHHHHHHHHHHSSEECEECCGG----------------GTTTCEEEECCSSCCHHHHHH
T ss_pred -CceEEEEeC-------CCCCHHHHHHHHHHhCCEEEecCccc----------------cCCCEEEEecCCCCCHHHHHH
Confidence 233444433 24567889999987669999765321 235799999998899999999
Q ss_pred HHHHHHHHHhcc
Q 012991 432 FRDAVILLVEEG 443 (452)
Q Consensus 432 l~~~l~~~~~~~ 443 (452)
++++|+++++++
T Consensus 363 ~~~~l~~~l~~~ 374 (376)
T 3f0h_A 363 LVNAFKDLQKRN 374 (376)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=276.07 Aligned_cols=354 Identities=16% Similarity=0.142 Sum_probs=253.1
Q ss_pred CCCeEEecc-CCCCCCcHHHHHHHHHHHHHHhc--CC-chhhhhhhhHHHHHHHHH-HHhHhCCCCCCcEEEecChhHHH
Q 012991 37 QHGVARINN-GSFGSCPKSVLADQQKWQLKFLQ--QP-DDFYFNSLRKGILESRAA-VKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 37 ~~~~~~l~~-~~~~~~p~~v~e~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.+.++||+. .+.++.|+.+.+++.+.+..... .+ .....+...+...+++++ ++++++.+ ++++|+|+|+|+
T Consensus 6 ~~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~~g~t~a~ 82 (371)
T 2e7j_A 6 TKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAK 82 (371)
T ss_dssp --CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHH
T ss_pred CCCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEeCChHHHH
Confidence 356899998 44678888899999887754311 00 111234456678999999 99999984 999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++ +++||+|++++++|++....+ ...|.+++.++.+ .+.++.+ +++|++.+++... .++
T Consensus 83 ~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~--~~~~~~~d~~~l~~~l~~~~~-~~~ 147 (371)
T 2e7j_A 83 FAVMHSL--------AKKDAWVVMDENCHYSSYVAA----ERAGLNIALVPKT--DYPDYAITPENFAQTIEETKK-RGE 147 (371)
T ss_dssp HHHHHHH--------CCTTCEEEEETTCCHHHHHHH----HHTTCEEEEECCC--CTTTCCCCHHHHHHHHHHHTT-TSC
T ss_pred HHHHHHH--------hCCCCEEEEccCcchHHHHHH----HHcCCeEEEeecc--cCCCCCcCHHHHHHHHHhhcc-cCC
Confidence 9999987 478999999999999987764 4569999999521 3333334 8899998853211 157
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
+++|++++++||+|.+.|+++|.++|++||+ ++|+|++|+.+..+.+...+++|++++|+||+++++.++|++++++++
T Consensus 148 ~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~ 226 (371)
T 2e7j_A 148 VVLALITYPDGNYGNLPDVKKIAKVCSEYDV-PLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEW 226 (371)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHTTTC-CEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTT
T ss_pred eEEEEEECCCCCCcccCCHHHHHHHHHHcCC-eEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechh
Confidence 9999999999999999999999999999999 699999999988777766668899999999998888889999999886
Q ss_pred cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH--HHHHHHHHHHHHHHcCCCcCC
Q 012991 271 LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN--HEQALKMARMLANAWGTSLGS 348 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~--~~~~~~l~~~L~~~~~~~~~~ 348 (452)
++. ...+.. .+... ...+..++++.....++.++++++.. .+.++. +++++++.+.|.++ ++++..
T Consensus 227 ~~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~------~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 294 (371)
T 2e7j_A 227 AEI-VLRRSE---KYKNK-EVELLGCTARGATIITLMASFPHVRE------RIKRWDEEVEKARRFAAEMEKL-GIKQLG 294 (371)
T ss_dssp TTT-TTCBCS---SCTTS-BGGGTTCCCCSHHHHHHHHHHHHHHH------HGGGHHHHHHHHHHHHHHHHHT-TCEEES
T ss_pred hhh-hccccc---cCccc-ccccccCCcCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHc-CcEEec
Confidence 542 011211 00000 00111356666666666666666552 456677 88899999999887 877665
Q ss_pred CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE-eccccc-CCH
Q 012991 349 PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR-ISHQVY-NTL 426 (452)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR-is~~~~-~t~ 426 (452)
+....++++++.++ +..++.+.|.+ +||.+.. ..+... ..+..++++| ++++.+ +++
T Consensus 295 ~~~~~~~~~~~~~~---------~~~~~~~~l~~-~gi~~~~-~~~~~~----------~~g~~~~~iRii~~~~~~~~~ 353 (371)
T 2e7j_A 295 DNPHNHDLMFFHAE---------VLYEISKKAKG-GRFFLYR-ELKSRK----------IHGIKPGLTRYFKLSTYGLSD 353 (371)
T ss_dssp SSSCCSSEEEEECH---------HHHHHHHHSSS-GGGHHHH-HHHHTT----------EECSCTTCCSEEEEECTTCCH
T ss_pred CCCccCceEEEECC---------CHHHHHHHHHH-CCEEEEe-cccccc----------ccCCCCCceEEEEeeccCCCH
Confidence 54223678888763 56788899875 5999854 221000 0001257899 999988 899
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+|+++++++|++++++
T Consensus 354 ~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 354 EEVDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=275.59 Aligned_cols=379 Identities=12% Similarity=-0.005 Sum_probs=263.8
Q ss_pred CCCCHHHHHh----hhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC
Q 012991 22 RCISEAEIRD----EFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD 97 (452)
Q Consensus 22 ~~~~~~~ir~----~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 97 (452)
..++.+.+.+ .....+.+.+++....+.+.++.+.+++.+.+.....++.. .....++.+++++++++++|++.
T Consensus 35 ~~~~~~~~~~~~~~~i~l~gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~--~p~~~~le~~~~~~la~l~g~~~ 112 (502)
T 3hbx_A 35 NSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDE--YPVTTELQNRCVNMIAHLFNAPL 112 (502)
T ss_dssp SCCCHHHHHHHHHHHGGGSCCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTTT--CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHhccCCCCCceeccccCCCCCHHHHHHHHHHhccCCCChhc--ChhHHHHHHHHHHHHHHHhCCCc
Confidence 3455555444 33334445555554444566777888888765432222211 13356777889999999999961
Q ss_pred -CCc---EEEecChhHHHHHHHHHhhcccccCCCCCCC-----EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 012991 98 -VGE---ISLVDNATTAAAIVLQQIGRGFTEGRFHRND-----TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA 168 (452)
Q Consensus 98 -~~~---i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~-----~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~ 168 (452)
+++ .++|+|||+|+.+++.++.+.+......+|+ +|+++.++|.++.... ...|++++.+++ +
T Consensus 113 ~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~----~~~G~~~~~v~~----~ 184 (502)
T 3hbx_A 113 EEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFA----RYFEVELKEVKL----S 184 (502)
T ss_dssp CSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHH----HHTTCEEEEECC----B
T ss_pred ccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHH----HHcCceeEEEec----C
Confidence 223 3469999999999998875432110001244 9999999999876554 556999999954 3
Q ss_pred Ch-HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc------CCCEEEEecccccCC------
Q 012991 169 SE-EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE------GVDQVFVDAAHAMGS------ 234 (452)
Q Consensus 169 ~~-~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~------~~~~~ivD~a~~~g~------ 234 (452)
++ +.+ +++|++++ .++|++|++++++|++|.+.|+++|.++|+++ |+ ++|+|+|++.+.
T Consensus 185 ~~~~~~d~~~l~~~i------~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~-~l~VD~A~~~~~~p~~~~ 257 (502)
T 3hbx_A 185 EGYYVMDPQQAVDMV------DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDT-PIHVDAASGGFIAPFLYP 257 (502)
T ss_dssp TTBCSCCHHHHHHHC------CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCC-CEEEECTTGGGTHHHHCT
T ss_pred CCcCcCCHHHHHHHH------hhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCC-eEEEECCccchhhhhhCc
Confidence 32 445 89999999 57899999999999999999999999999999 99 599999998543
Q ss_pred -ccccccccCccEEEEcCcccCcCCCCcEEEEEecC-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 235 -IKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 235 -~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
.+.++...++|++++++|||+++|.|+|++++++. .+.. . ......+.+... ......++.+...++++.+++..
T Consensus 258 ~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~-~-~~~~~~yl~~~~-~~~~~~~sr~~~~~~a~~~al~~ 334 (502)
T 3hbx_A 258 ELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPE-E-LIFHINYLGADQ-PTFTLNFSKGSSQVIAQYYQLIR 334 (502)
T ss_dssp TCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCG-G-GCEEECSSSSCE-EECCSCCSCBSHHHHHHHHHHHH
T ss_pred ccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhH-H-hccCcccccCCC-CCccccCCchHHHHHHHHHHHHH
Confidence 23444445799999999999889999999888754 3322 1 011111112111 11112244444455667777776
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC-cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP-PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
+... |+..+.++..++++++.+.|.+++++++..+ +. .++++|.++.. ...+..++.+.|.++ ||.++..
T Consensus 335 lg~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~--~~~v~f~~~~~----~~~~~~~l~~~L~~~-Gi~v~~~ 405 (502)
T 3hbx_A 335 LGHE--GYRNVMENCRENMIVLREGLEKTERFNIVSKDEG--VPLVAFSLKDS----SCHTEFEISDMLRRY-GWIVPAY 405 (502)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS--SSEEEEEESSC----SSCCHHHHHHHHHTT-TCBCCEE
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC--ceEEEEEecCC----CcCCHHHHHHHHHhC-CcEEeec
Confidence 6543 7888999999999999999999877887765 33 67889988621 134667899999775 9998654
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+.. .....++|++++..+|.+|++++++.|+++++.
T Consensus 406 ~~p~~-------------~~~~~~lRisv~~~~t~edid~li~~L~~~l~~ 443 (502)
T 3hbx_A 406 TMPPN-------------AQHITVLRVVIREDFSRTLAERLVIDIEKVMRE 443 (502)
T ss_dssp ECCTT-------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCcc-------------cCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 33321 123468999999999999999999999998863
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=269.42 Aligned_cols=349 Identities=13% Similarity=0.118 Sum_probs=250.2
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC---CCCcEEEecChhHHHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD---DVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~i~~t~g~t~a~~~~~ 115 (452)
..+.|.. ++...++.+.+++.+.... ++.........++++.++++++.. +++++++|+|||+|+.+++
T Consensus 5 ~~~~~~p-~p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~ 76 (385)
T 2bkw_A 5 VDTLLIP-GPIILSGAVQKALDVPSLG-------HTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA 76 (385)
T ss_dssp CCEECSS-SSCCCCHHHHHTTSCCCCC-------TTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred cceeecC-CCcCchHHHHHHHhccccc-------cCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHH
Confidence 3444444 4556666688888754321 111222345677888888888763 1479999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.++.+. .++||+|++..+.+++.. +...+...|.+++.+++. +.++.+ +++|++++++ .++++|
T Consensus 77 ~~~~~~-----~~~gd~vlv~~~~~~~~~--~~~~~~~~g~~~~~v~~~---~~~~~~d~~~l~~~l~~-----~~~~~v 141 (385)
T 2bkw_A 77 SNFILS-----KAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRPL---KIGESVPLELITEKLSQ-----NSYGAV 141 (385)
T ss_dssp HHHSCT-----TCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECCS---STTSCCCHHHHHHHHHH-----SCCSEE
T ss_pred HHHhcc-----CCCCCeEEEEcCCcchHH--HHHHHHHcCCceEEEecC---CCCCCCCHHHHHHHHhc-----CCCCEE
Confidence 987311 278999988855433222 112246679999999541 333434 8999999952 378999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccc
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILS 272 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~ 272 (452)
++++++||||.+.|+++|.++|++| |+ ++|+|++|+.|..++++..+++|++++|+|||++|+.|+|+++++++.+.
T Consensus 142 ~~~~~~nptG~~~~l~~i~~~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~ 220 (385)
T 2bkw_A 142 TVTHVDTSTAVLSDLKAISQAIKQTSPET-FFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMD 220 (385)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHCTTS-EEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHH
T ss_pred EEEccCCCcCeEcCHHHHHHHHHhhCCCC-EEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHH
Confidence 9999999999999999999999999 99 79999999998887777777899999999999899999999999887765
Q ss_pred -cCCC----CCceeccCCCCc-cc----c------cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 273 -SDMH----HPVVSHEFGNGL-PI----E------SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 273 -~~l~----~~~~~~~~~~~~-~~----~------~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
. +. .+... ++... .. . ..+.++++...++++.++++++.+. |++.++++.+++++++.+
T Consensus 221 ~~-l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~ 295 (385)
T 2bkw_A 221 YA-LNDSKNGHVHG--YFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEE--GLHKRWDLHREMSDWFKD 295 (385)
T ss_dssp HH-TCHHHHCCCSC--STTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHH
T ss_pred HH-HhhccCCCCCc--eeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHH
Confidence 3 21 00000 11100 00 0 0112466666777777888887754 789999999999999999
Q ss_pred HH-HHHcCCCcCCCc--c-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 337 ML-ANAWGTSLGSPP--E-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 337 ~L-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
.| .++ ++++..+. . ..++++++.++ + ..++.+.|.+ .||.+..+..+ ...
T Consensus 296 ~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~l~~-~gi~v~~g~~~---------------~~~ 349 (385)
T 2bkw_A 296 SLVNGL-QLTSVSRYPSNMSAHGLTAVYVA-------D--PPDVIAFLKS-HGVVIAGGIHK---------------DIG 349 (385)
T ss_dssp HHHTTT-CCEESSCSSSTTBCSSCEEEECS-------C--HHHHHHHHHH-TTEECBCCCCT---------------TTG
T ss_pred HHHHhc-CceecccCcccccCCceEEEecC-------C--HHHHHHHHHH-CCeEEeCCCCc---------------ccC
Confidence 99 877 77766432 1 24778888886 2 5678888876 59999765432 124
Q ss_pred cceEEec-ccc---cCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARIS-HQV---YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis-~~~---~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|++ ++. .+|++|+++++++|++++++
T Consensus 350 ~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 350 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred CCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 5799999 652 46999999999999998753
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=269.45 Aligned_cols=382 Identities=12% Similarity=-0.031 Sum_probs=256.7
Q ss_pred CCCCCCHHHHHhhhccC--CCCeEEeccCCC--CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCC
Q 012991 20 LTRCISEAEIRDEFSHH--QHGVARINNGSF--GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINA 95 (452)
Q Consensus 20 ~~~~~~~~~ir~~~~~~--~~~~~~l~~~~~--~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 95 (452)
|...++.+++-+++... .......+.+.+ .+.++.+.+++.+.+.....++. ......++.+++++++++++|+
T Consensus 19 p~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~~~~~--~~~~~~~l~~~~~~~la~l~g~ 96 (452)
T 2dgk_A 19 PLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKE--EYPQSAAIDLRCVNMVADLWHA 96 (452)
T ss_dssp CCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBTTCTT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCCCChh--hChhHHHHHHHHHHHHHHHhCC
Confidence 33566666665544321 122222222222 34555677777665432111111 1244567788999999999999
Q ss_pred CCCCc-----EEEecChhHHHHHHHHHhhcccccCCCCC-----CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCC
Q 012991 96 DDVGE-----ISLVDNATTAAAIVLQQIGRGFTEGRFHR-----NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPF 165 (452)
Q Consensus 96 ~~~~~-----i~~t~g~t~a~~~~~~~l~~~~~~~~~~~-----g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~ 165 (452)
+ .+. +++|+|||+|+.+++.++...+......+ +++|++++ .|.++..+. ...|++++.+++
T Consensus 97 ~-~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~----~~~G~~v~~v~~-- 168 (452)
T 2dgk_A 97 P-APKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFA----RYWDVELREIPM-- 168 (452)
T ss_dssp C-CCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHH----HHTTCEEEECCC--
T ss_pred C-cccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHH----HHcCceEEEEec--
Confidence 7 444 89999999999999887742110000012 36999999 998866554 456999999954
Q ss_pred CCCC-hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc------CCCEEEEecccccCCc--
Q 012991 166 PLAS-EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE------GVDQVFVDAAHAMGSI-- 235 (452)
Q Consensus 166 ~~~~-~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~------~~~~~ivD~a~~~g~~-- 235 (452)
+. ++.+ +++|+++| +++|++|++++++|+||.+.|+++|+++|+++ |+ ++|+|++++.+..
T Consensus 169 --~~~~~~~d~~~l~~~i------~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~-~l~vD~a~~~~~~~~ 239 (452)
T 2dgk_A 169 --RPGQLFMDPKRMIEAC------DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDI-DMHIDAASGGFLAPF 239 (452)
T ss_dssp --BTTBCSCCHHHHHHHC------CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCC-CEEEECTTGGGTHHH
T ss_pred --CCCCCeECHHHHHHHH------hhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCC-cEEEEcccHHHHHHh
Confidence 32 3445 89999999 57899999999999999999999999999996 99 5999999987653
Q ss_pred -----cccccccCccEEEEcCcccCcCCCCcEEEEEecC-cc-ccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 236 -----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS-IL-SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 236 -----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
+.++...++|++++|+|||+++|.|+|+++++++ .+ .. + . ....+..+........++.+....+++.+
T Consensus 240 ~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~a 315 (452)
T 2dgk_A 240 VAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQE-L-V--FNVDYLGGQIGTFAINFSRPAGQVIAQYY 315 (452)
T ss_dssp HCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGG-G-C--EEECCTTCCEEECCSCCSCBCHHHHHHHH
T ss_pred hCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHH-h-c--cCccccCCCCCCcccCCCChhHHHHHHHH
Confidence 2343344789999999999889999999999764 33 22 1 1 11111111101111123444445556666
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcce
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGV 386 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 386 (452)
+++.+... |++.+.++..++++++.+.|.+++++++..+.. ...++++|.++... ....+..++.+.|.++ ||
T Consensus 316 al~~lg~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~--~~~~~~~~l~~~L~~~-Gi 390 (452)
T 2dgk_A 316 EFLRLGRE--GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE--DPGYTLYDLSERLRLR-GW 390 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTC--CCSCCHHHHHHHHHHT-TC
T ss_pred HHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcc--cccCCHHHHHHHHHhc-CC
Confidence 77766543 788999999999999999999987787764421 23678888886210 0123557899999775 99
Q ss_pred EeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 387 EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++....+.. ....+++|++++.++|.+|++++++.|+++++.
T Consensus 391 ~v~~~~~~~~-------------~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 391 QVPAFTLGGE-------------ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 433 (452)
T ss_dssp BCCEEECSTT-------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeCCcc-------------cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 8754322211 123468999999999999999999999998754
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=267.12 Aligned_cols=343 Identities=12% Similarity=0.074 Sum_probs=244.6
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCc-----hhhhhhhhHHHHHHHHHHHhHhCCCCCC-c-EEEecChhHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPD-----DFYFNSLRKGILESRAAVKDLINADDVG-E-ISLVDNATTAAA 112 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~~~~~~~-~-i~~t~g~t~a~~ 112 (452)
.+|++++++.+.|+.|++++.+.+..+.+.+. .++.....+..+++++.+++++|++ ++ + +++|+|||+++.
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCC-CCcEEEEECCCchHHHH
Confidence 46788888889999999999887643322111 1122344567899999999999996 43 5 467799999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH-H-HHHHHHHHhccccCCCc
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE-I-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~-~~~l~~~i~~~~~~~~~ 190 (452)
.++.++ +++||+|++..+.|.+.. +...++..| +++.++++.+ ++.+. + .++++ + +++
T Consensus 83 ~~~~~l--------~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~-~~~~~~~~~~~~~--i------~~~ 142 (362)
T 2c0r_A 83 MIPMNF--------LKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEA-SNYMTLPKLQEIQ--L------QDN 142 (362)
T ss_dssp HHHHHH--------CCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGG-GTTCSCCCGGGCC--C------CTT
T ss_pred HHHHhc--------CCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccc-cccccCCCHHHcc--c------CCC
Confidence 999987 478999998877655532 222356668 8988865310 01111 1 22222 4 578
Q ss_pred eEEEEEeccCCCCccc-ccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 191 IRLAIIDHITSMPCVV-IPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~-~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
|++|++++++|+||.. .|+++| +|+ ++++|++|+.|..++++..+ |++++|+||+ +||.|+|+++++++
T Consensus 143 t~~v~~~~~~n~tG~~~~~l~~i------~~~-~vivD~a~~~~~~~~~~~~~--d~~~~s~~K~-~g~~G~G~l~~~~~ 212 (362)
T 2c0r_A 143 AAYLHLTSNETIEGAQFKAFPDT------GSV-PLIGDMSSDILSRPFDLNQF--GLVYAGAQKN-LGPSGVTVVIVRED 212 (362)
T ss_dssp EEEEEEESEETTTTEECSSCCCC------TTS-CEEEECTTTTTSSCCCGGGC--SEEEEETTTT-TCCSSCEEEEEEGG
T ss_pred cCEEEEeCCcCccceeccccccc------CCC-EEEEEChhhccCCccchhHC--cEEEEecccc-ccCcCcEEEEEcHH
Confidence 9999999999999996 677777 899 69999999999888776654 8999999998 57999999999998
Q ss_pred ccccCCCCCceeccCCCC-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcC
Q 012991 270 ILSSDMHHPVVSHEFGNG-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLG 347 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~ 347 (452)
+++. +. +.....+... ........++++...++++.++++++.+. ++++.++++.+++++++.+.|.+++++ .+.
T Consensus 213 ~~~~-l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 289 (362)
T 2c0r_A 213 LVAE-SP-KHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEER-GGLEGVQQANRKKASLIYDAIDQSGGFYRGC 289 (362)
T ss_dssp GSSS-CC-TTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHTSTTSSEES
T ss_pred HHhh-cc-ccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 8865 32 1100000000 00011223677777788888888887641 258999999999999999999987435 654
Q ss_pred CCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 348 SPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 348 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.++. ....+++|.++ .+.+..++.+.|.++ ||.+..+..+ .+++|+|++.+++.
T Consensus 290 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~-gi~~~~g~~~------------------~~~iRis~~~~~~~ 344 (362)
T 2c0r_A 290 VDVDSRSDMNITFRLA------SEELEKEFVKASEQE-GFVGLKGHRS------------------VGGLRASIYNAVPY 344 (362)
T ss_dssp SCGGGBCSSEEEEECS------CHHHHHHHHHHHHHT-TEESCBCCTT------------------TCSEEEECCTTSCH
T ss_pred CChHHcCCcEEEEEcC------CcchHHHHHHHHHHC-CCeeccCCCC------------------CCEEEEECCCCCCH
Confidence 3322 23567888876 345678899999764 9987543321 35799999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 012991 427 EDYEKFRDAVILLVE 441 (452)
Q Consensus 427 ~di~~l~~~l~~~~~ 441 (452)
+|+++++++|+++++
T Consensus 345 e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 345 ESCEALVQFMEHFKR 359 (362)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=260.72 Aligned_cols=339 Identities=15% Similarity=0.163 Sum_probs=251.1
Q ss_pred CCeEEeccCCC-C-CCcHHHHHHHHHHHHHHh-cCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 38 HGVARINNGSF-G-SCPKSVLADQQKWQLKFL-QQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 38 ~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
..++.|..+.+ + ..++.+.+++.+.+..+. ..+.+....+..+...++++.+++++|.+ ..+++++|++|+..+
T Consensus 64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~~a 140 (427)
T 2w8t_A 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTT---GAIVFSTGYMANLGI 140 (427)
T ss_dssp EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHH
T ss_pred ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCC---ceEEecCcHHHHHHH
Confidence 34667777753 5 467789999998887643 12222223344577899999999999984 567778888899998
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
+.++ +++||.|+++.+.|.++..++. ..|.+++.+ +..+ +++|++.+++.. ..++++|
T Consensus 141 l~~l--------~~~gd~vl~~~~~h~~~~~~~~----~~g~~~~~~----~~~d----~~~le~~l~~~~--~~~~~~v 198 (427)
T 2w8t_A 141 ISTL--------AGKGEYVILDADSHASIYDGCQ----QGNAEIVRF----RHNS----VEDLDKRLGRLP--KEPAKLV 198 (427)
T ss_dssp HHHH--------SCTTCEEEEETTCCHHHHHHHH----HSCSEEEEE----CTTC----HHHHHHHHHTSC--SSSCEEE
T ss_pred HHHh--------cCCCCEEEECCcccHHHHHHHH----HcCCeeEEe----CCCC----HHHHHHHHHhcc--CCCCeEE
Confidence 8876 4789999999999999877654 458898888 3322 688888886421 1278999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---------ccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---------IDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
++++++||+|.+.|+++|.++|++||+ ++|+|++|+.+... +++. .++|+++.|++|+ +|++| |+++
T Consensus 199 ~~~~~~n~tG~~~~l~~l~~l~~~~g~-~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~-~g~~g-G~v~ 274 (427)
T 2w8t_A 199 VLEGVYSMLGDIAPLKEMVAVAKKHGA-MVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKS-VGTVG-GFVV 274 (427)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHTTC-EEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSST-TCSCC-EEEE
T ss_pred EEcCCCCCCCCccCHHHHHHHHHHcCC-EEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhh-hccCC-CEEE
Confidence 999999999999999999999999999 79999999987654 3332 2579999999997 56887 9999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++++. +. ... ....+.++.+...+.++.++++.+. ..+.++++++++++++.+.|.++ ++.
T Consensus 275 ~~~~l~~~-l~-~~~---------~~~~~~~~~~~~~~aa~~~al~~~~----~~~~~~~~~~~~~~~l~~~L~~~-g~~ 338 (427)
T 2w8t_A 275 SNHPKFEA-VR-LAC---------RPYIFTASLPPSVVATATTSIRKLM----TAHEKRERLWSNARALHGGLKAM-GFR 338 (427)
T ss_dssp ECCTTGGG-GG-GTC---------HHHHSSCCCCHHHHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred eCHHHHHH-HH-Hhc---------ccccccCCCCHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 99888775 21 110 0011123444444444445666543 24778889999999999999988 777
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+..++ ..++++++.++ +..+..++.+.|.++ ||.+..+..+.. ....+++|++++.++|
T Consensus 339 ~~~~~-~~~~~~~~~~~------~~~~~~~l~~~L~~~-Gi~v~~~~~~~~-------------~~~~~~lRi~~~~~~t 397 (427)
T 2w8t_A 339 LGTET-CDSAIVAVMLE------DQEQAAMMWQALLDG-GLYVNMARPPAT-------------PAGTFLLRCSICAEHT 397 (427)
T ss_dssp ESCSS-CCSSEEEEEES------SHHHHHHHHHHHHHT-TEECEEECTTTS-------------CTTCEEEEEECCTTCC
T ss_pred ccCCC-CCCCEEEEEEC------CHHHHHHHHHHHHHC-CeEEeeeCCCCC-------------CCCCeEEEEEeCCCCC
Confidence 65333 12678888886 345677899999876 999976654321 1224689999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
++|+++++++|++++++
T Consensus 398 ~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 398 PAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999865
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=261.67 Aligned_cols=343 Identities=12% Similarity=0.114 Sum_probs=250.2
Q ss_pred CCCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSF-G-SCPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
+..++.|..+.+ + +.++.+.+++.+.+..+... +...+.++..+...+++++++++++.+ + .+++++||+|+..
T Consensus 42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~--~-~i~~~sGt~a~~~ 118 (399)
T 3tqx_A 42 EKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTD--D-TILYSSCFDANGG 118 (399)
T ss_dssp TEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHT
T ss_pred CeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCC--c-EEEECchHHHHHH
Confidence 345677776654 4 35788999999888764211 112223445677899999999999985 4 5555667889999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ +++|++|+++.+.|++....+ +..|.++..++. .+ ++++++.+++....+.++++
T Consensus 119 ~l~~~--------~~~gd~v~~~~~~~~~~~~~~----~~~g~~~~~~~~----~d----~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 119 LFETL--------LGPEDAIISDELNHASIIDGI----RLCKAQRYRYKN----NA----MGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp THHHH--------CCTTCEEEEETTCCHHHHHHH----HSCCSEEEEECT----TC----TTHHHHHHHHHHTTTCSSEE
T ss_pred HHHHh--------cCCCCEEEECCcccHHHHHHH----HHcCCceeEeCC----CC----HHHHHHHHHhhhccCCCceE
Confidence 88876 589999999999999876654 456999998843 22 45666666543222238999
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc------cccc--cCccEEEEcCcccCcCCCCcEEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI------DVKE--IGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~------~~~~--~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|.... +... .++|+++.|+||+++|++| |+++
T Consensus 179 v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~ 256 (399)
T 3tqx_A 179 IATDGVFSMDGIIADLKSICDLADKYNA-LVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTS 256 (399)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTC-EEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEE
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCC-EEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEE
Confidence 9999999999999999999999999999 799999997664322 1111 2579999999998776888 9999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
.++++++. + .... ....+.++.+...+.++.++++...+ +.+.++++++++++++.+.|.++ +++
T Consensus 257 ~~~~~~~~-~-~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-g~~ 321 (399)
T 3tqx_A 257 GHKEIIEW-L-RNRS---------RPYLFSNTVAPVIVATSLKVLELLKT---EGPQLRKQLQENSRYFRAGMEKL-GFQ 321 (399)
T ss_dssp ECHHHHHH-H-HHHC---------HHHHSSCCCCHHHHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred cCHHHHHH-H-HHhC---------cceeccCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 98887765 1 1110 00111234555455555566666532 67889999999999999999988 777
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+..+. ++++++.++ ...+..++.+.|.++ ||.+..+..+.. ....+++|++++..++
T Consensus 322 ~~~~~---~~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~~~~~~~-------------~~~~~~iRi~~~~~~~ 378 (399)
T 3tqx_A 322 LVPGN---HPIIPVMLG------DAQLATNMADHLLQE-GIYVVGFSYPVV-------------PMGKARIRVQMSAVHT 378 (399)
T ss_dssp BCCCS---SSEEEEEEE------CHHHHHHHHHHHHHT-TEECCEECTTTS-------------CTTCEEEEEECCTTCC
T ss_pred cCCCC---CCEEEEEeC------CHHHHHHHHHHHHHC-CCEEeeeCCCCC-------------CCCCceEEEEeecCCC
Confidence 66332 668888876 345678899999875 999975433211 1235799999998899
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
++|+++++++|++++++
T Consensus 379 ~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 379 QQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999865
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-31 Score=255.84 Aligned_cols=335 Identities=12% Similarity=0.090 Sum_probs=248.8
Q ss_pred CCCCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCC
Q 012991 20 LTRCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDV 98 (452)
Q Consensus 20 ~~~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 98 (452)
.....+...+++.+.. +.+++|+.+... +.|+.+.+++.+.+.....++. ... .++++++++++|++ +
T Consensus 14 ~~~~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-------~~~-~~lr~~la~~~~~~-~ 82 (365)
T 3get_A 14 YEPGKDIEVIAKEYGV--KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPD-------DSM-IELKSTLAQKYKVQ-N 82 (365)
T ss_dssp CCCCCCHHHHHHHTTC--SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCC-------TTC-HHHHHHHHHHHTCC-G
T ss_pred CCCCCCHHHHHHhcCC--CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCC-------CCh-HHHHHHHHHHhCCC-c
Confidence 3445567777777753 679999977554 5778899999887653222221 122 68999999999985 7
Q ss_pred CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHH
Q 012991 99 GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l 177 (452)
+++++|+|+|+|+.+++.++ +++||+|+++.++|.+....+ +..|.+++.+++ + ++++ + ++++
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~--~-~~~~-~d~~~l 146 (365)
T 3get_A 83 ENIIIGAGSDQVIEFAIHSK--------LNSKNAFLQAGVTFAMYEIYA----KQCGAKCYKTQS--I-THNL-DEFKKL 146 (365)
T ss_dssp GGEEEESSHHHHHHHHHHHH--------CCTTCEEEECSSCCTHHHHHH----HHHTCEEEECSS--S-SCCH-HHHHHH
T ss_pred ceEEECCCHHHHHHHHHHHH--------hCCCCEEEEeCCChHHHHHHH----HHcCCEEEEEec--C-CCCC-CCHHHH
Confidence 89999999999999999987 588999999999999876655 445999999854 1 3345 6 9999
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHH--HcCCCEEEEecccccCC------ccccc----cccCcc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR--DEGVDQVFVDAAHAMGS------IKIDV----KEIGAD 245 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~--~~~~~~~ivD~a~~~g~------~~~~~----~~~~~d 245 (452)
++++ .+++++|++++++||||.++|.+++.++++ ++|+ ++|+|++|+.+. .+.+. ...+.+
T Consensus 147 ~~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T 3get_A 147 YETH------KDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDC-LVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV 219 (365)
T ss_dssp HHHT------TTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTS-EEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTE
T ss_pred HHHh------CCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCc-EEEEeCccHHHhcccCCcccccHhHHhccCCCE
Confidence 9999 578999999999999999999999988888 6799 899999987332 22221 123567
Q ss_pred EEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 246 FYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
+++.|+||+ +|++| +|++++++++++. + .... ...+++...+.++.++++.. ..++..
T Consensus 220 i~~~s~sK~-~~~~G~r~G~~~~~~~~~~~-~-~~~~-------------~~~~~~~~~~~~~~~~l~~~----~~~~~~ 279 (365)
T 3get_A 220 LYLGTFSKL-YGLGGLRIGYGIANANIISA-F-YKLR-------------APFNVSNLALKAAVAAMDDD----EFTEKT 279 (365)
T ss_dssp EEEEESSST-TSCTTTCCEEEEECHHHHHH-H-HHHS-------------CTTCSCHHHHHHHHHHHTCH----HHHHHH
T ss_pred EEEeecchH-hcCcchheEEEEcCHHHHHH-H-HHhc-------------CCCCcCHHHHHHHHHHhCCH----HHHHHH
Confidence 889999997 45444 7999998777664 1 1110 00224444444445555432 247788
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
+++++++++++.+.|.++ ++++..+. ++++++.++ .. +..++.+.|.++ ||.+..+..+
T Consensus 280 ~~~~~~~~~~l~~~l~~~-g~~~~~~~---~~~~~~~~~------~~-~~~~~~~~l~~~-gi~v~~g~~~--------- 338 (365)
T 3get_A 280 LENNFSQMELYKEFAKKH-NIKIIDSY---TNFITYFFD------EK-NSTDLSEKLLKK-GIIIRNLKSY--------- 338 (365)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCEECCCS---SSEEEEECS------SS-CHHHHHHHHHTT-TEECEECGGG---------
T ss_pred HHHHHHHHHHHHHHHHhC-CCEECCCC---CeEEEEECC------CC-CHHHHHHHHHHC-CEEEEECccC---------
Confidence 889999999999999988 77765433 567888886 22 677899999775 9999776554
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+ ++++|++++ +.+|+++++++|++++
T Consensus 339 ------~--~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 339 ------G--LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ------T--CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred ------C--CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 1 579999987 8999999999999876
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=274.20 Aligned_cols=375 Identities=15% Similarity=0.087 Sum_probs=265.3
Q ss_pred CCCCCCHHHHHhhhccC-C--CCeEEeccCCCC---CCcHHHHHHHHHHHHHHhc-CCchh-hhhhhhHHHHHHHHHHHh
Q 012991 20 LTRCISEAEIRDEFSHH-Q--HGVARINNGSFG---SCPKSVLADQQKWQLKFLQ-QPDDF-YFNSLRKGILESRAAVKD 91 (452)
Q Consensus 20 ~~~~~~~~~ir~~~~~~-~--~~~~~l~~~~~~---~~p~~v~e~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~la~ 91 (452)
|...++.+++.+++... . ....+.+....+ ..++.+.+.+.+.+..... ++... ......++.+++++++++
T Consensus 39 p~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~ 118 (497)
T 3mc6_A 39 PSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLR 118 (497)
T ss_dssp CSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHH
Confidence 34567777776665321 1 234444443333 2345677888777665322 12111 113445677889999999
Q ss_pred HhCCC-CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCC-
Q 012991 92 LINAD-DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLAS- 169 (452)
Q Consensus 92 ~~~~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~- 169 (452)
++|++ +.+++++|+|||+|+.+++.++.....+..-.++++|+++.+.|.++..++ ...|.+++.+++ ++
T Consensus 119 ~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~----~~~G~~~~~v~~----~~~ 190 (497)
T 3mc6_A 119 MFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAA----YYFGMKLRHVEL----DPT 190 (497)
T ss_dssp HTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHH----HHSCCEEEEECB----CTT
T ss_pred HhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHH----HHcCCeEEEEec----Ccc
Confidence 99986 467999999999999999998742110000012379999999999976665 446999999954 33
Q ss_pred hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc------------c
Q 012991 170 EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI------------K 236 (452)
Q Consensus 170 ~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~------------~ 236 (452)
++.+ +++|++++ .+++++|++++++|++|.+.|+++|+++|++||+ ++|+|++|+.+.. +
T Consensus 191 ~~~~d~~~l~~~i------~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~-~livD~a~~~~~~~f~~~~~~~~~~~ 263 (497)
T 3mc6_A 191 TYQVDLGKVKKFI------NKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKL-PLHVDSCLGSFIVSFMEKAGYKNLPL 263 (497)
T ss_dssp TCSBCTTTTGGGC------CSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTC-CEEEETTTTHHHHGGGTTTTCCSCCC
T ss_pred cCcCCHHHHHHHH------hhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCC-EEEEECcchhhhhhhhhhhcccCCcc
Confidence 3444 78899888 5689999999999999999999999999999999 6999999874322 3
Q ss_pred ccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh
Q 012991 237 IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF 316 (452)
Q Consensus 237 ~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 316 (452)
++....++|++++|+||+++++.|+|+++++++.+.. . .......+..+........++.+....+++.++++.+...
T Consensus 264 ~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~ 341 (497)
T 3mc6_A 264 LDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRM-H-QYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGEN 341 (497)
T ss_dssp CSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHT-T-TSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHh-h-hhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHH
Confidence 5555668999999999998899999999998766554 1 1111111111110111122444444466777888877754
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCC
Q 012991 317 EGGIDGIMQRNHEQALKMARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAP 395 (452)
Q Consensus 317 ~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~ 395 (452)
|++++.++..++++++.+.|.+ ++++++..++. .++++|..+ +.+..++.+.|.++ ||.++....
T Consensus 342 --~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~--~~~v~~~~~-------~~~~~~l~~~L~~~-Gi~v~~~~~-- 407 (497)
T 3mc6_A 342 --GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR--YSVISFSSK-------TLNIHELSDRLSKK-GWHFNALQK-- 407 (497)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC--SSEEEEECT-------TTTHHHHHHHHHTT-TCBCEECCS--
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC--eeEEEEeCC-------CCCHHHHHHHHHhC-CEEEecCCC--
Confidence 7888999999999999999999 68888776543 667777764 45778999999775 998764322
Q ss_pred CCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 396 KDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
+..+|+++. .+|.+|+++++++|++++++.
T Consensus 408 -----------------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 408 -----------------PVALHMAFT-RLSAHVVDEICDILRTTVQEL 437 (497)
T ss_dssp -----------------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHH
T ss_pred -----------------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHH
Confidence 347899998 679999999999999998653
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=258.02 Aligned_cols=335 Identities=14% Similarity=0.078 Sum_probs=243.9
Q ss_pred CCCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCC
Q 012991 21 TRCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG 99 (452)
Q Consensus 21 ~~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 99 (452)
....+...+++.+. .+.+++|+.+... +.|+.+.+++.+.+... ..+ +.....+++++++++++++ ++
T Consensus 17 ~~~~~~~~~~~~~~--~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----~~y---~~~~~~~lr~~la~~~~~~-~~ 85 (363)
T 3ffh_A 17 KPGKREEEVMAELG--LTKITKLSSNENPLGTSKKVAAIQANSSVET-----EIY---PDGWASSLRKEVADFYQLE-EE 85 (363)
T ss_dssp ---CHHHHHHHTTT--CSCCEECSSCSCTTCCCHHHHHHHHTCBSCC-----CBC-------CHHHHHHHHHHHTCC-GG
T ss_pred CCCCCHHHHHHhcC--CCceEEccCCCCCCCCCHHHHHHHHHHHHHh-----hcC---CCcchHHHHHHHHHHhCCC-hh
Confidence 34455666777775 3678999988555 56777888887754221 111 2345689999999999985 78
Q ss_pred cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHH
Q 012991 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFK 178 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~ 178 (452)
++++|+|+|+++.+++.++ +++|++|+++.++|++....+ +..|.+++.++.+ .++.+ +++++
T Consensus 86 ~v~~~~g~t~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~----~~~~~d~~~l~ 149 (363)
T 3ffh_A 86 ELIFTAGVDELIELLTRVL--------LDTTTNTVMATPTFVQYRQNA----LIEGAEVREIPLL----QDGEHDLEGML 149 (363)
T ss_dssp GEEEESSHHHHHHHHHHHH--------CSTTCEEEEEESSCHHHHHHH----HHHTCEEEEEECC----TTSCCCHHHHH
T ss_pred hEEEeCCHHHHHHHHHHHH--------ccCCCEEEEcCCChHHHHHHH----HHcCCEEEEecCC----CCCCcCHHHHH
Confidence 9999999999999999987 478999999999999866554 4459999999653 22334 89999
Q ss_pred HHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCc-----cccc-cccCccEEEEc
Q 012991 179 KGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSI-----KIDV-KEIGADFYVSN 250 (452)
Q Consensus 179 ~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~-----~~~~-~~~~~d~~~~s 250 (452)
+++ ++++++|++++++||||.++|.+++.++++.+ |+ ++|+|++|+.... .... ...+.++++.|
T Consensus 150 ~~i------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s 222 (363)
T 3ffh_A 150 NAI------DEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDV-LVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRT 222 (363)
T ss_dssp HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTS-EEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEE
T ss_pred Hhc------ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCc-EEEEeCchHhhcCccccCHHHHhhcCCCEEEEee
Confidence 999 57899999999999999999999999999887 99 8999999984321 1111 11234578889
Q ss_pred CcccCcCCCCc--EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 251 LHKWFFCPPSV--AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 251 ~~K~l~g~~G~--G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
++|+ +|++|. |++++++++++. + .... ...+.+...+.++.++++.. +.++..+++.+
T Consensus 223 ~sK~-~g~~G~r~G~~~~~~~~~~~-l-~~~~-------------~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~ 282 (363)
T 3ffh_A 223 FSKI-YGLASARVGYGIADKEIIRQ-L-NIVR-------------PPFNTTSIGQKLAIEAIKDQ----AFIGECRTSNA 282 (363)
T ss_dssp SSST-TCCSSCCCEEEEECHHHHHH-H-HHTC-------------CSCCCBHHHHHHHHHHHHCH----HHHHHHHHHHH
T ss_pred chhh-hcCchhceeeeecCHHHHHH-H-HHhC-------------CCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHH
Confidence 9996 566664 999998877765 1 1110 01233444444444444422 24677888899
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++++++.+.|.+.+++.+..+. ++++++.++ . +..++.+.|.+ +||.+..+..+
T Consensus 283 ~~~~~l~~~l~~~~g~~~~~~~---~~~~~~~~~-------~-~~~~~~~~l~~-~gi~v~~g~~~-------------- 336 (363)
T 3ffh_A 283 NGIKQYEAFAKRFEKVKLYPAN---GNFVLIDLG-------I-EAGTIFSYLEK-NGYITRSGAAL-------------- 336 (363)
T ss_dssp HHHHHHHHHHHHCTTCEECCCC---SSEEEEECS-------S-CHHHHHHHHHH-TTEECEETTTT--------------
T ss_pred HHHHHHHHHHhhCCCceECCCC---CeEEEEECC-------C-CHHHHHHHHHH-CCeEEEeCccC--------------
Confidence 9999999999986687765432 567888886 2 66789999976 49999876554
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..++++|++++ +++|+++++++|++++
T Consensus 337 --~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 337 --GFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp --TCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred --CCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 22579999987 8999999999998763
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=262.67 Aligned_cols=324 Identities=12% Similarity=0.156 Sum_probs=238.7
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 75 FNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
...+.+.++++++.+++++|++ +.++||+|||+|+++++..+ .+||+|++.+++|++. .+..++...
T Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~sgt~a~~~~~~~~---------~~gd~vi~~~~~~~~~--~~~~~~~~~ 96 (379)
T 3ke3_A 30 SKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGTYGMEAVARQL---------TIDEDCLIIRNGWFSY--RWTQILEKG 96 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHHH---------CTTCEEEEEECSHHHH--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCC--CEEEEcCChhHHHHHHHHhC---------CCCCeEEEEeCCchhH--HHHHHHHHh
Confidence 3445677899999999999996 78899999999999987644 6899999999999875 333335555
Q ss_pred C--cEEEEEeCCCCC-----CChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCE
Q 012991 155 G--GSVVEVQLPFPL-----ASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQ 223 (452)
Q Consensus 155 g--~~v~~~~~~~~~-----~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~ 223 (452)
| .+++.++.+... ...+.+ ++++++++++ +++++|++++++|++|.+.| +++|.++|++||+ +
T Consensus 97 g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~-----~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~-~ 170 (379)
T 3ke3_A 97 KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE-----DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGG-L 170 (379)
T ss_dssp CCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHH-----HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTC-E
T ss_pred CCCCceEEEeccccccccccCCCCCCCHHHHHHHHhh-----cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCC-E
Confidence 5 477887652100 001123 7899998852 46889999999999999999 9999999999999 8
Q ss_pred EEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCce-eccCCCC--------c-ccccc
Q 012991 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVV-SHEFGNG--------L-PIESA 293 (452)
Q Consensus 224 ~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~-~~~~~~~--------~-~~~~~ 293 (452)
+|+|++++ |..++++..+++|++++|+|||++||.|+|++++++++++. +..... ...+... . .....
T Consensus 171 li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 248 (379)
T 3ke3_A 171 LVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKK-VESTESNCFSLDLKQWLTIMRAYENGGHA 248 (379)
T ss_dssp EEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHH-HHTCCCSCSTTCHHHHHHHHHHHHTTSCC
T ss_pred EEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHh-hhcCCCCceeecHHHHHHHHHhhhccCCC
Confidence 99999999 88888888889999999999999999999999999887654 211000 0000000 0 00011
Q ss_pred cccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccc-eEEEEcCCccccCChhh
Q 012991 294 WIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAA-MVMVGLPSRLRVMGEDD 372 (452)
Q Consensus 294 ~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 372 (452)
+.++++...++++.++++++.+. |++.+.++.+++++++++.|.++ |+++..++...++ +..+..+ +.+
T Consensus 249 ~~~t~~~~~~~a~~aal~~~~~~--g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~-------~~~ 318 (379)
T 3ke3_A 249 YHATMPTDSLRQFRDAILEAKEI--GFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTE-------RDD 318 (379)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECS-------CHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccC-------Ccc
Confidence 23588888888999999988865 89999999999999999999987 8877655443344 4444443 212
Q ss_pred HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 373 ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 373 ~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
. .+.+.|.+ +||.+..+..+.... ...++.+|+|++.++|++||++++++|++++++
T Consensus 319 ~-~~~~~L~~-~Gi~v~~g~~~~~~~-----------~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 319 M-HKGSAFAE-AGLQIAAGVPLKVGE-----------PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp H-HSSHHHHH-TTCCCEECCCCSSCC-----------CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHH-CCeEEeCCccccccc-----------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence 2 23566755 599987654431100 123579999999999999999999999998864
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=258.04 Aligned_cols=340 Identities=13% Similarity=0.159 Sum_probs=249.7
Q ss_pred CCCCeEEeccCCC-CC-CcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGSF-GS-CPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~~-~~-~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.+..++.|+.+.+ +. .|+.+.+++.+.+...... .......+..+..+++++.+++++|. +++++|+|||+|+.
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~---~~v~~~~ggt~a~~ 117 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK---EAAILFSTGFQSNL 117 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHH
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC---CcEEEECCHHHHHH
Confidence 3456788888765 53 7788999998887654211 11112234467789999999999997 48999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceE
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
+++.++ +++||+|+++.+.|.++...+ ...|.+++.++. .+ +++|++.+++.. .++++
T Consensus 118 ~~~~~~--------~~~gd~V~~~~p~~~~~~~~~----~~~g~~~~~v~~----~d----~~~l~~~l~~~~--~~~~~ 175 (398)
T 3a2b_A 118 GPLSCL--------MGRNDYILLDERDHASIIDGS----RLSFSKVIKYGH----NN----MEDLRAKLSRLP--EDSAK 175 (398)
T ss_dssp HHHHHS--------SCTTCEEEEETTCCHHHHHHH----HHSSSEEEEECT----TC----HHHHHHHHHTSC--SSSCE
T ss_pred HHHHHH--------hCCCCEEEECCccCHHHHHHH----HHcCCceEEeCC----CC----HHHHHHHHHhhc--cCCce
Confidence 999976 588999999999999886665 446999998843 22 688888886421 02789
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc---cccccc-c----CccEEEEcCcccCcCCCCcEEE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE-I----GADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~-~----~~d~~~~s~~K~l~g~~G~G~l 264 (452)
+|++++++||||.+.|+++|.++|++||+ ++|+|++++.+.. ..++.. . ++|+++.|+||+ +++.| |++
T Consensus 176 ~v~~~~~~nptG~~~~~~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~-~~~~G-G~~ 252 (398)
T 3a2b_A 176 LICTDGIFSMEGDIVNLPELTSIANEFDA-AVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKS-LASLG-GFV 252 (398)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSST-TCSSC-EEE
T ss_pred EEEEeCCCCCCCCccCHHHHHHHHHHcCc-EEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccc-ccCCC-cEE
Confidence 99999999999999999999999999999 7999999987643 122111 1 369999999997 66888 999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. + ..... .....++++.....++.++++.... .+.++++++++++++.+.|.++ ++
T Consensus 253 ~~~~~~~~~-l-~~~~~---------~~~~~~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-g~ 316 (398)
T 3a2b_A 253 AGDADVIDF-L-KHNAR---------SVMFSASMTPASVASTLKALEIIQN----EPEHIEKLWKNTDYAKAQLLDH-GF 316 (398)
T ss_dssp EECHHHHHH-H-HHHCH---------HHHSSBCCCHHHHHHHHHHHHHHHH----CTHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EeCHHHHHH-H-HHhcc---------cceecCCCCHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 998877664 1 11000 0011123333332234455655432 4567888999999999999987 77
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
++..+. ++++++.++ ++.+..++.+.|.++ ||.+..+..+.. ....+++|++++.++
T Consensus 317 ~~~~~~---g~~~~~~~~------~~~~~~~l~~~l~~~-gi~v~~~~~~~~-------------~~~~~~iRis~~~~~ 373 (398)
T 3a2b_A 317 DLGATE---SPILPIFIR------SNEKTFWVTKMLQDD-GVFVNPVVSPAV-------------PAEESLIRFSLMATH 373 (398)
T ss_dssp CBCSCC---SSEEEEECC------CHHHHHHHHHHHHHT-TEECEEECTTTS-------------CGGGCEEEEECCTTC
T ss_pred CcCCCC---CCEEEEEcC------CHHHHHHHHHHHHHC-CcEEEeeCCCCC-------------CCCCceEEEEEeCCC
Confidence 765432 678888886 355778899999876 999977654421 123579999999888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++|+++++++|++++++
T Consensus 374 ~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 374 TYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=257.37 Aligned_cols=341 Identities=13% Similarity=0.110 Sum_probs=246.9
Q ss_pred CCCeEEeccCCCC-C-CcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSFG-S-CPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~-~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
+..++.|+.+.+- + .|+.+.+++.+.+..+... ....+.+...+...++++++++++|++ + .+++++||+++..
T Consensus 44 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~-~i~~~sGs~a~~~ 120 (401)
T 1fc4_A 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME--D-AILYSSCFDANGG 120 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHT
T ss_pred CccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC--c-EEEeCChHHHHHH
Confidence 4567777666432 2 4788999999887653211 111233333677899999999999985 4 4566777889999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ .++||+|+++.+.|.+.... +...|.+++.++ ..+ .+++++.+++......++++
T Consensus 121 ~~~~~--------~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~----~~d----~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 121 LFETL--------LGAEDAIISDALNHASIIDG----VRLCKAKRYRYA----NND----MQELEARLKEAREAGARHVL 180 (401)
T ss_dssp THHHH--------CCTTCEEEEETTCCHHHHHH----HHTSCSEEEEEC----TTC----HHHHHHHHHHHHHTTCSSEE
T ss_pred HHHHH--------cCCCCEEEEcchhHHHHHHH----HHHcCCceEEEC----CCC----HHHHHHHHHHhhccCCCceE
Confidence 88876 47899999999999887654 355799998884 222 57777777532111127899
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-c--------ccccccCccEEEEcCcccCcCCCCcEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-K--------IDVKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~--------~~~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
|++++++||||.+.|+++|.++|+++|+ ++|+|++++.+.. + .++.. +.|+++.|+||+++|+.| |++
T Consensus 181 v~~~~~~nptG~~~~~~~i~~l~~~~~~-~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~ 257 (401)
T 1fc4_A 181 IATDGVFSMDGVIANLKGVCDLADKYDA-LVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYT 257 (401)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTE-EEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEE
T ss_pred EEEeCCcCCCCCCCCHHHHHHHHHHcCC-EEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEE
Confidence 9999999999999999999999999999 8999999975553 2 23322 579999999998757777 999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. + .... ....+.++.+...+.++.++++.+.. .+.++++++++++++.+.|.++ ++
T Consensus 258 ~~~~~~~~~-l-~~~~---------~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-g~ 321 (401)
T 1fc4_A 258 AARKEVVEW-L-RQRS---------RPYLFSNSLAPAIVAASIKVLEMVEA----GSELRDRLWANARQFREQMSAA-GF 321 (401)
T ss_dssp EECHHHHHH-H-HHHC---------HHHHHSCCCCHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EcCHHHHHH-H-HHhC---------cCceeCCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 998877764 1 1110 00111234555555555666666542 3677888999999999999987 77
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
++. +. .++++++.++ +..+..++.+.|.++ ||.+..+..+.. ....+++|++++.++
T Consensus 322 ~~~-~~--~~~~~~~~~~------~~~~~~~l~~~l~~~-gi~v~~~~~~~~-------------~~~~~~iRi~~~~~~ 378 (401)
T 1fc4_A 322 TLA-GA--DHAIIPVMLG------DAVVAQKFARELQKE-GIYVTGFFYPVV-------------PKGQARIRTQMSAAH 378 (401)
T ss_dssp CBC-CS--SSSEEEEEEE------CHHHHHHHHHHHHHT-TEECCEECTTSS-------------CTTCEEEEEECCTTC
T ss_pred ccc-CC--CCCEEEEEcC------ChHHHHHHHHHHHHC-CcEEeeecCCCC-------------CCCCceEEEEeCCCC
Confidence 765 32 3778888876 345677899999775 999976654321 122468999999888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++|+++++++|++++++
T Consensus 379 ~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 379 TPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-31 Score=267.33 Aligned_cols=341 Identities=13% Similarity=0.100 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHHh-cCCchhh-hhhhhHHHHHHHHHHHhHhCCC-CCCcE--EEecChhHHHHHHHHHhhcccccCCC
Q 012991 53 KSVLADQQKWQLKFL-QQPDDFY-FNSLRKGILESRAAVKDLINAD-DVGEI--SLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 53 ~~v~e~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~la~~~~~~-~~~~i--~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
..+.+.+.+.+.... .++.... .....+..+++++++++++|.+ +++++ ++|+|||+|+.+++.++...-.+..-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g 189 (514)
T 3mad_A 110 EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKG 189 (514)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC
Confidence 345556655554332 2222211 1334566778889999999985 11567 99999999999999987421100000
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
.++|+|+++.+.|.++..++.. .|.+++.+++ +.++.+ +++|++++ .+++++|++++++||+|.+
T Consensus 190 ~~~d~Vi~~~~~~~~~~~~~~~----~G~~v~~v~~----~~~~~~d~~~Le~~i------~~~~~~v~~~~~~nptG~~ 255 (514)
T 3mad_A 190 ITAPEAVVPVSAHAAFDKAAQY----FGIKLVRTPL----DADYRADVAAMREAI------TPNTVVVAGSAPGYPHGVV 255 (514)
T ss_dssp CSSCEEEEETTSCTHHHHHHHH----HTCEEEEECB----CTTSCBCHHHHHHHC------CTTEEEEEEETTCTTTCCC
T ss_pred CCCCeEEEeCccchHHHHHHHH----cCCeeEEeee----CCCCCCCHHHHHHHh------ccCCEEEEEeCCCCCCccc
Confidence 1238999999999997766544 5999999954 444444 89999999 5789999999999999999
Q ss_pred ccHHHHHHHHHHcCCCEEEEecccccCCc-----------cccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 207 IPVRKLVKICRDEGVDQVFVDAAHAMGSI-----------KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 207 ~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----------~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
.|+++|.++|++||+ ++|+|++|+.+.. +++....++|++++|+||+++++.|+|+++++++....
T Consensus 256 ~~l~~i~~la~~~~i-~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~-- 332 (514)
T 3mad_A 256 DPIPEIAALAAEHGI-GCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLH-- 332 (514)
T ss_dssp CCHHHHHHHHHHHTC-EEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHT--
T ss_pred cCHHHHHHHHHHhCC-eEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhc--
Confidence 999999999999999 7999999875533 35555668999999999998899999999998776654
Q ss_pred CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccc
Q 012991 276 HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAA 355 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 355 (452)
........+..+........++++....+++.++++.+... +++++.++..++++++.+.|.+++++++..++ .+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~~ 407 (514)
T 3mad_A 333 YQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE--GYLDATRRILQAADRLKAGVRAIPSLKILGDP---LW 407 (514)
T ss_dssp TTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC---SS
T ss_pred cccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC---eE
Confidence 12222212222111222334666666677788888877754 78899999999999999999998788876655 34
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRD 434 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~ 434 (452)
+++|..+ +.+..++.+.|.++ ||.++ +..+ ++.+|+++... +++++++++++
T Consensus 408 ~~~~~~~-------~~~~~~l~~~L~~~-Gi~v~-g~~~------------------~~~~Ri~~~~~~~~~e~i~~~l~ 460 (514)
T 3mad_A 408 VIAVASD-------ELNIYQVMEEMAGR-GWRLN-GLHR------------------PPAFHVALTLRHTEPGVVDRFLA 460 (514)
T ss_dssp EEEEECS-------SSCHHHHHHHHHTT-TCBCE-EETT------------------TTEEEEECCGGGGSTTHHHHHHH
T ss_pred EEEEeCC-------CCCHHHHHHHHHhc-CCEec-cCCC------------------CCeEEEEEecCCCCHHHHHHHHH
Confidence 7777653 45678899999775 99883 2221 36899999744 45699999999
Q ss_pred HHHHHHhc
Q 012991 435 AVILLVEE 442 (452)
Q Consensus 435 ~l~~~~~~ 442 (452)
+|++++++
T Consensus 461 ~L~~~l~~ 468 (514)
T 3mad_A 461 DLQDAVAQ 468 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=273.34 Aligned_cols=361 Identities=9% Similarity=0.009 Sum_probs=248.1
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch------------hhhhhhhHHHHHHHHHHHhH
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD------------FYFNSLRKGILESRAAVKDL 92 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~la~~ 92 (452)
++..++++|+.. ...+|||++++++.|+.|.+++.........++.. .......+..++++++++++
T Consensus 67 ~i~~~~~~~~~~-~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 145 (456)
T 2z67_A 67 KIKLFLKFLSMM-DTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQ 145 (456)
T ss_dssp HHHHHHHHHHTT-BGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHH
Confidence 356778889865 45689999999999998999887643110111111 11123566788999999999
Q ss_pred hCCCCCCcEEEecChh-HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH
Q 012991 93 INADDVGEISLVDNAT-TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE 171 (452)
Q Consensus 93 ~~~~~~~~i~~t~g~t-~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~ 171 (452)
+|++ ++ +++|+||| .++.+++.++. . ..+++.|++++++|++....+ +..|++++.++.. +.++++
T Consensus 146 ~g~~-~~-~~~t~g~te~a~~~al~~~~-~-----~~~~~~vi~~~~~h~s~~~~~----~~~G~~~~~v~~~-~~~~~~ 212 (456)
T 2z67_A 146 LGLN-VH-AIATPISTGMSISLCLSAAR-K-----KYGSNVVIYPYASHKSPIKAV----SFVGMNMRLVETV-LDGDRV 212 (456)
T ss_dssp TTCC-CE-EEEESSCHHHHHHHHHHHHH-H-----HHCCCEEEEECCCCHHHHHHH----HHTTCEEEEECCE-EETTEE
T ss_pred cCCC-CC-EEEeCcHHHHHHHHHHHHHH-H-----hcCCCEEEEECCCcHHHHHHH----HHcCCCceEEEEe-ccCCCC
Confidence 9996 45 99999999 56665666542 1 125678999999999965554 4569999998531 113444
Q ss_pred HH-HHHHHHHH-hccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC---Ccccccccc--Cc
Q 012991 172 EI-INEFKKGI-EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG---SIKIDVKEI--GA 244 (452)
Q Consensus 172 ~~-~~~l~~~i-~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g---~~~~~~~~~--~~ 244 (452)
.+ +++|++++ +... ..++.+|+.++++|++|.+.|+++|+++|+++|+ ++|+|+|++.. ..+.+...+ ++
T Consensus 213 ~~d~~~l~~~i~~~~~--~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~-~v~vD~A~~~~~~g~~~~~~~~~~~~~ 289 (456)
T 2z67_A 213 YVPVEDIENAIKKEIE--LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDI-PHIINGAYAIQNNYYLEKLKKAFKYRV 289 (456)
T ss_dssp ECCHHHHHHHHHHHHH--TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-CEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred CcCHHHHHHHHHHHhh--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-cEEEECcchHHHHHhhHHHHHhhCCCC
Confidence 55 89999988 3110 1368889899999999999999999999999999 69999877643 334444333 79
Q ss_pred cEEEEcCcccCcCCCCcEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 245 DFYVSNLHKWFFCPPSVAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 245 d~~~~s~~K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
|++++|+|||+++|.|+|+++++ ++++.. +...+ . |..+....+++.+++..+... |++++
T Consensus 290 D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~-l~~~~----~-----------g~~~~~~~~~~~aal~~l~~~--~~~~~ 351 (456)
T 2z67_A 290 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKE-ISLSY----P-----------GRASATPVVNTLVSLLSMGSK--NYLEL 351 (456)
T ss_dssp SEEEEEHHHHHCCCSSCEEEEESCHHHHHH-HHTTS----C-----------SCBCSHHHHHHHHHHHHHHHH--HHHHH
T ss_pred CEEEEcCCCCcCCCCCeEEEEEcCHHHHhh-cCcCC----C-----------CCCCCCHHHHHHHHHHHHHHH--HHHHH
Confidence 99999999998899999999995 455553 21111 1 111122244556666666543 78899
Q ss_pred HHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEc--CCccccCChhhHHHHHHHHhhhcceE-eeecccCCC-
Q 012991 324 MQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGL--PSRLRVMGEDDALRLRGHLRVRFGVE-VPIHYQAPK- 396 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~gI~-v~~~~~~~~- 396 (452)
.++..++++++.+.|.+++ |+.+..++ ++++|.+ + +. ..++.+.|.++ ||. ++.......
T Consensus 352 ~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~----~~v~~~~~~~-------~~-~~~l~~~L~~~-gi~~~rv~~~~g~f 418 (456)
T 2z67_A 352 VKNQKNSKKLLDELLNDLSKKTGGKFLDVE----SPIASCISVN-------SD-PVEIAAKLYNL-RVTGPRGIKKTDHF 418 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCBCCCC----CSSEEEEECS-------SC-HHHHHHHHHHT-TEESCEEECTTCHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCEecCCC----CeEEEEEecc-------cH-HHHHHHHHHHc-CCCcceEEeecCcc
Confidence 9999999999999999986 77666554 4566665 3 11 45788888765 763 222100000
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
.|.+|. ....+++|+|++.++|++||++++++|++++
T Consensus 419 ~G~~~~-------~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 419 GNCYLG-------TYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHTCSS-------CCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cccccc-------ccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 000111 1123699999999999999999999998754
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=264.21 Aligned_cols=360 Identities=13% Similarity=0.068 Sum_probs=245.6
Q ss_pred HHHHHhhhcc------CCCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC
Q 012991 26 EAEIRDEFSH------HQHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN 94 (452)
Q Consensus 26 ~~~ir~~~~~------~~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 94 (452)
.+.||+.+.. .++.+++|+.|.+. +.|+.+.+++.+.+.... ...|.......+++++++++++
T Consensus 36 ~~~i~~~~~~~~~~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~-----~~~y~~~~g~~~lr~~la~~~~ 110 (427)
T 3dyd_A 36 FNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK-----YNGYAPSIGFLSSREEIASYYH 110 (427)
T ss_dssp -----------CCCCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC-----SSSCCCTTCCHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhhcccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc-----CCCCCCCCCcHHHHHHHHHHHh
Confidence 4557776542 24568999988864 677889999998876421 1123334557889999999998
Q ss_pred -----CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCC
Q 012991 95 -----ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLAS 169 (452)
Q Consensus 95 -----~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~ 169 (452)
++ +++|++|+|||+|+.+++.++ .++|++|++++|+|++....+ ...|.+++.++... +.
T Consensus 111 ~~~~~~~-~~~v~~t~g~t~al~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~--~~ 175 (427)
T 3dyd_A 111 CPEAPLE-AKDVILTSGCSQAIDLCLAVL--------ANPGQNILVPRPGFSLYKTLA----ESMGIEVKLYNLLP--EK 175 (427)
T ss_dssp BTTBCCC-GGGEEEESSHHHHHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEEEEG--GG
T ss_pred hcCCCCC-hHHEEEecCcHHHHHHHHHHh--------cCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeccc--cc
Confidence 54 689999999999999999987 478999999999998865544 55699999986521 11
Q ss_pred hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC----ccccccc
Q 012991 170 EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKE 241 (452)
Q Consensus 170 ~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~ 241 (452)
...+ ++.+++.+ .+++++|++++++||||.++| +++|+++|+++|+ ++|+|++|+... ....+..
T Consensus 176 ~~~~d~~~l~~~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~~i~Deay~~~~~~g~~~~~~~~ 248 (427)
T 3dyd_A 176 SWEIDLKQLEYLI------DEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCV-PILADEIYGDMVFSDCKYEPLAT 248 (427)
T ss_dssp TTEECHHHHHSSC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-CEEEECTTTTCBCSSCCCCCGGG
T ss_pred CCCCCHHHHHHHh------ccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEcCchhhccCCCcCccHHH
Confidence 2223 88999888 567999999999999999999 8899999999999 799999987532 2223333
Q ss_pred cCcc---EEEEcCcccCcCCCC--cEEEEEecCcccc--CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH
Q 012991 242 IGAD---FYVSNLHKWFFCPPS--VAFLYCRKSILSS--DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314 (452)
Q Consensus 242 ~~~d---~~~~s~~K~l~g~~G--~G~l~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 314 (452)
++.+ +++.|++|. ++++| +|+++++++.... .+...... .. ....+++...+.++.++++...
T Consensus 249 ~~~~~~vi~~~S~sK~-~~~~G~riG~~~~~~~~~~~~~~i~~~l~~--------~~-~~~~~~~~~~~~a~~~~L~~~~ 318 (427)
T 3dyd_A 249 LSTDVPILSCGGLAKR-WLVPGWRLGWILIHDRRDIFGNEIRDGLVK--------LS-QRILGPCTIVQGALKSILCRTP 318 (427)
T ss_dssp GCSSCCEEEEEESTTT-SSCGGGCCEEEEEECSTTSSHHHHHHHHHH--------HH-HHHCCSCHHHHHHHHHHHHHSC
T ss_pred hCCCCcEEEEeecccc-CCCcCcceEEEEecCcchhhHHHHHHHHHH--------HH-hccCCCCHHHHHHHHHHHHhcC
Confidence 3333 667799995 56666 7999887532110 00000000 00 0013444445555555554311
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 315 RFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
. +.++..+++++++++++.+.|.+++++.+..+.. +.++++.++.. ...+..+..++++.|.+++||.+.++..+
T Consensus 319 ~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~--g~~~~~~l~~~-~~~~~~~~~~~~~~l~~~~gV~v~~g~~~ 393 (427)
T 3dyd_A 319 G--EFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSG--AMYLMVGIEME-HFPEFENDVEFTERLVAEQSVHCLPATCF 393 (427)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSB--TTEEEEEECGG-GCTTCSSHHHHHHHHHHHHCEECEEGGGG
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCe--eEEEEEecCHh-hcCCCCCHHHHHHHHHHHCCEEEECCccc
Confidence 1 1467788889999999999999887887665554 66777776521 00112456788888865569999876654
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcccc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQV 445 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~~ 445 (452)
..++++|+++. +++++|++++++|++++++-.+
T Consensus 394 ----------------~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~~ 426 (427)
T 3dyd_A 394 ----------------EYPNFIRVVIT--VPEVMMLEACSRIQEFCEQHYH 426 (427)
T ss_dssp ----------------TCTTEEEEESC--SCHHHHHHHHHHHHHHHHHHCC
T ss_pred ----------------CCCCeEEEEEC--CCHHHHHHHHHHHHHHHHHhhc
Confidence 22579999987 5899999999999999876443
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=256.42 Aligned_cols=348 Identities=11% Similarity=0.014 Sum_probs=248.6
Q ss_pred hccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHH
Q 012991 33 FSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-DVGEISLVDNATTA 110 (452)
Q Consensus 33 ~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a 110 (452)
|...+..+++|..+... +.|+.+.+++.+.+.. ....+.....+..+++.+.+++.+|.+ ++++|++|+|+|+|
T Consensus 22 ~d~~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a 97 (391)
T 3dzz_A 22 WGVLKEKELPMWIAEMDFKIAPEIMASMEEKLKV----AAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA 97 (391)
T ss_dssp TTTCCTTCEECCSSCCSSCCCHHHHHHHHHHHTT----CCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred eeccCCCceeccccCCCCCCCHHHHHHHHHHHhc----CcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence 33356689999887755 5678899999887643 112222234667788888888888832 26899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+. .+....+ +++|+++++ .+
T Consensus 98 ~~~~~~~l--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~l~-----~~ 159 (391)
T 3dzz_A 98 ISAMVRQF--------TSPGDQILVQEPVYNMFYSVI----EGNGRRVISSDLIY-ENSKYSVNWADLEEKLA-----TP 159 (391)
T ss_dssp HHHHHHHH--------SCTTCEEEECSSCCHHHHHHH----HHTTCEEEECCCEE-ETTEEECCHHHHHHHHT-----ST
T ss_pred HHHHHHHh--------CCCCCeEEECCCCcHHHHHHH----HHcCCEEEEeeeee-cCCceeecHHHHHHHHh-----cc
Confidence 99999987 488999999999999876655 45699999885421 0111123 899999994 26
Q ss_pred ceEEEEEeccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccccCC----ccccccccC---cc--EEEEcCcccCcC
Q 012991 190 MIRLAIIDHITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKEIG---AD--FYVSNLHKWFFC 257 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~~~---~d--~~~~s~~K~l~g 257 (452)
++++|++++++||||.++ ++++|+++|++||+ ++|+|++|+.+. ...++...+ +| +++.|+||++ |
T Consensus 160 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~-g 237 (391)
T 3dzz_A 160 SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQV-LLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF-N 237 (391)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH-T
T ss_pred CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCC-EEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc-c
Confidence 899999999999999994 57788999999999 899999987533 223333332 55 8999999974 4
Q ss_pred CCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 258 ~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
++| +|+++++ +++.+. + .... ......+++...+.++.++++.... ..+.++++.+++++++
T Consensus 238 ~~G~r~G~~~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l 302 (391)
T 3dzz_A 238 LAALHAACAIIPNPDLRAR-A-EESF----------FLAGIGEPNLLAIPAAIAAYEEGHD---WLRELKQVLRDNFAYA 302 (391)
T ss_dssp CTTTCCEEEECCSHHHHHH-H-HHHH----------HHHTCSSCCTTHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHH
T ss_pred ccchhheEEEECCHHHHHH-H-HHHH----------HhhccCCCCHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHH
Confidence 444 8998887 666554 1 1110 0001123444454555555544222 3678888899999999
Q ss_pred HHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 335 ARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 335 ~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.+.|.+ ++++.+..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.. ..+
T Consensus 303 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------~~~ 361 (391)
T 3dzz_A 303 REFLAKEVPEVKVLDSNA--SYLAWVDISA-----LGMNAEDFCKYLREKTGLIISAGNGYRG--------------NGH 361 (391)
T ss_dssp HHHHHHHCTTSEECCCCB--SSEEEEECGG-----GCSCHHHHHHHHHHHHCEECEESGGGCT--------------TGG
T ss_pred HHHHHhhCCCcEEeccCc--eEEEEEehhh-----cCCCHHHHHHHHHHhCCEEEeCchhhCC--------------CCC
Confidence 999998 67887766554 5566777752 1346788999996345999987665422 336
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++ ++++++++++++|++++++
T Consensus 362 ~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 362 EFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp GEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 89999998 5899999999999999865
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.8e-31 Score=257.78 Aligned_cols=352 Identities=12% Similarity=0.114 Sum_probs=239.9
Q ss_pred CCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC
Q 012991 22 RCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD 96 (452)
Q Consensus 22 ~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~ 96 (452)
....+....+.....++.+++|+.+.+. ..|+.+.+++.+.+... ...| .......++++.+++++ |++
T Consensus 14 ~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~y--~~~~g~~~l~~~la~~~~~~~g~~ 87 (388)
T 1j32_A 14 MTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQG----KTRY--GPAAGEPRLREAIAQKLQRDNGLC 87 (388)
T ss_dssp SSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTT----CCSC--CCTTCCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcC----CCCC--CCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3444444434333346778999887765 45777889888776431 1112 11222344555555554 542
Q ss_pred -CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-H
Q 012991 97 -DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-I 174 (452)
Q Consensus 97 -~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~ 174 (452)
+++++++|+|+|+|+.+++.++ +++||+|++++++|++....+ +..|.+++.++.+. ++.+.+ +
T Consensus 88 ~~~~~v~~~~g~~~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~ 153 (388)
T 1j32_A 88 YGADNILVTNGGKQSIFNLMLAM--------IEPGDEVIIPAPFWVSYPEMV----KLAEGTPVILPTTV--ETQFKVSP 153 (388)
T ss_dssp CCGGGEEEESHHHHHHHHHHHHH--------CCTTCEEEEESSCCTHHHHHH----HHTTCEEEEECCCG--GGTTCCCH
T ss_pred CChhhEEEcCCHHHHHHHHHHHh--------cCCCCEEEEcCCCChhHHHHH----HHcCCEEEEecCCc--ccCCCCCH
Confidence 3579999999999999999987 478999999999999876554 45699999985421 112233 8
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc----ccccc-----c
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKE-----I 242 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~-----~ 242 (452)
++|++++ .+++++|++++++||||.++| +++|+++|+++|+ ++|+|++++.+... ..+.. .
T Consensus 154 ~~l~~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~ 226 (388)
T 1j32_A 154 EQIRQAI------TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGL-WVLSDEIYEKILYDDAQHLSIGAASPEAY 226 (388)
T ss_dssp HHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred HHHHHhc------CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEEccchhcccCCCCCCCHHHcccccc
Confidence 9999998 568999999999999999976 8899999999999 79999998764321 11111 3
Q ss_pred CccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCH
Q 012991 243 GADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGI 320 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~ 320 (452)
+.|+++.|+||+ +|++| +|++++++++++. + .... .....+.+...+ .++...+.......
T Consensus 227 ~~~~~~~s~sK~-~~~~G~r~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~---~a~~~~l~~~~~~~ 289 (388)
T 1j32_A 227 ERSVVCSGFAKT-YAMTGWRVGFLAGPVPLVKA-A-TKIQ-----------GHSTSNVCTFAQ---YGAIAAYENSQDCV 289 (388)
T ss_dssp HTEEEEEESTTT-TTCTTTCCEEEECCHHHHHH-H-HHHH-----------HTTTCSCCHHHH---HHHHHHHHSCSHHH
T ss_pred CCEEEEeechhc-cCCcccceEEEEeCHHHHHH-H-HHHH-----------hhcccCCCHHHH---HHHHHHHhCCcHHH
Confidence 578999999997 57677 8999998877654 1 1110 000011222222 22333333211136
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCC
Q 012991 321 DGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQ 400 (452)
Q Consensus 321 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~ 400 (452)
+.++++++++++++.+.|.+++++++..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~----- 357 (388)
T 1j32_A 290 QEMLAAFAERRRYMLDALNAMPGLECPKPDG--AFYMFPSIAK-----TGRSSLDFCSELLDQHQVATVPGAAFG----- 357 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB--TTEECCBCGG-----GTCCHHHHHHHHHHHHCEECEEGGGGT-----
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcccCCCe--eEEEEEecCC-----CCCCHHHHHHHHHHhCCEEEeChhhhC-----
Confidence 7788888999999999998877887765543 4556665541 024667899888764699997765541
Q ss_pred CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 401 PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 401 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|++++ +++++++++++.|++++++
T Consensus 358 -----------~~~~iRis~~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 358 -----------ADDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp -----------CTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 2478999997 5899999999999988753
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.9e-32 Score=262.05 Aligned_cols=345 Identities=14% Similarity=0.116 Sum_probs=241.8
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch------hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecCh-hHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD------FYFNSLRKGILESRAAVKDLINADDVGEISLVDNA-TTAA 111 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~-t~a~ 111 (452)
.+++++.+ +.+.|+.|++++.+.+... .+++. .+.+...+..+++++++++++|+++++++++|+|+ |+|+
T Consensus 3 ~~~~~~~g-~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al 80 (360)
T 1w23_A 3 QVFNFNAG-PSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CCEECCSS-SCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred ceEeecCC-CcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHH
Confidence 34455544 5588888999998876432 12211 11344566789999999999999645699999998 9999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHH-HHhccccCCC
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKK-GIEKGKKDGK 189 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~-~i~~~~~~~~ 189 (452)
.+++.++... -++++.|+++.++|.+. .. +...| +++.++++. +++.+ ++++++ ++ ++
T Consensus 81 ~~~~~~l~~~-----~~~g~~vi~~~~~~~~~----~~-~~~~g-~~~~v~~~~---~~~~~d~~~l~~~~i------~~ 140 (360)
T 1w23_A 81 TMLPMNLLTK-----GTIGNYVLTGSWSEKAL----KE-AKLLG-ETHIAASTK---ANSYQSIPDFSEFQL------NE 140 (360)
T ss_dssp HHHHHHHCCT-----TCEEEEEECSHHHHHHH----HH-HHTTS-EEEEEEECG---GGTSCSCCCGGGCCC------CT
T ss_pred HHHHHHhcCC-----CCcccEEEecchhHHHH----HH-HHHhC-CeEEeeccc---ccCcCCccchHhhcc------CC
Confidence 9999887410 13466788877777652 11 45678 999996521 12222 567776 66 57
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
++++|++++++||||.++| +| +++||+ ++|+|++|+.+..++++..+ |++++|+||+ +|+.|+|+++++++
T Consensus 141 ~~k~v~~~~~~nptG~~~~--~i---~~~~~~-~li~D~a~~~~~~~~~~~~~--di~~~s~sK~-~~~~G~G~~~~~~~ 211 (360)
T 1w23_A 141 NDAYLHITSNNTIYGTQYQ--NF---PEINHA-PLIADMSSDILSRPLKVNQF--GMIYAGAQKN-LGPSGVTVVIVKKD 211 (360)
T ss_dssp TEEEEEEESEETTTTEECS--SC---CCCCSS-CEEEECTTTTTSSCCCGGGC--SEEEEETTTT-TSCTTCEEEEEEHH
T ss_pred CCCEEEEeCCCCCcceecc--cc---cccCCc-eEEEechhhcCCCCcCcccC--CEEEEEcccc-cCCCCcEEEEEcHH
Confidence 8999999999999999987 33 338999 69999999998877766544 8999999996 67889999999988
Q ss_pred ccccCCCCCceeccCCCCcc-cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcC
Q 012991 270 ILSSDMHHPVVSHEFGNGLP-IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLG 347 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~ 347 (452)
+++. + .+...+....... ......++++...++++.++++++.+. ++++.++++.+++++++.+.|.+++++ ...
T Consensus 212 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 288 (360)
T 1w23_A 212 LLNT-K-VEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDL-GGAEAIAKQNEEKAKIIYDTIDESNGFYVGH 288 (360)
T ss_dssp HHCS-C-CTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHTTTTSSEES
T ss_pred HHhh-c-ccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 8765 2 2221100000000 011223567777777777788876641 257889999999999999999987544 332
Q ss_pred C-CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 348 S-PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
. +....+.++++.++ +..+..++.+.|.+ .||.+..+.. .++++|++++.++++
T Consensus 289 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~-~gi~~~~~~~------------------~~~~iRis~~~~~~~ 343 (360)
T 1w23_A 289 AEKGSRSLMNVTFNLR------NEELNQQFLAKAKE-QGFVGLNGHR------------------SVGGCRASIYNAVPI 343 (360)
T ss_dssp SCGGGBCSSEEEEECS------SHHHHHHHHHHHHH-TTEESCBCCT------------------TTCSEEEECCTTSCH
T ss_pred CCchhccCcEEEEEcC------CCccHHHHHHHHHH-CCeeeecCCC------------------CCCeEEEEecCCCCH
Confidence 1 22222448888886 23456778888866 5999854322 146899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+|+++++++|++++++
T Consensus 344 ~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 344 DACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=252.19 Aligned_cols=325 Identities=12% Similarity=0.062 Sum_probs=242.7
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
.++.+++|+.+... +.|+.+.+++.+.+..... + +.....+++++++++++++ ++++++|+|+|+|+.++
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-------y-~~~~~~~l~~~la~~~~~~-~~~i~~~~g~~~a~~~~ 84 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVVKANR-------Y-AKNEILMLGNKLAAHHQVE-APSILLTAGSSEGIRAA 84 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGGGTTS-------C-CHHHHHHHHHHHHHHTTSC-GGGEEEESHHHHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHhhCcC-------C-CCCchHHHHHHHHHHhCCC-hHHEEEeCChHHHHHHH
Confidence 45778999887655 5778899999886643211 1 2346789999999999985 78999999999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+.++ .++||+|+++.++|++....+ +..|.+++.++. +.++.+ +++|++++++ .+++++
T Consensus 85 ~~~l--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~----~~~~~~d~~~l~~~l~~----~~~~~~ 144 (354)
T 3ly1_A 85 IEAY--------ASLEAQLVIPELTYGDGEHFA----KIAGMKVTKVKM----LDNWAFDIEGLKAAVAA----YSGPSI 144 (354)
T ss_dssp HHHH--------CCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECC----CTTSCCCHHHHHHHHHT----CSSCEE
T ss_pred HHHH--------hCCCCeEEECCCCchHHHHHH----HHcCCEEEEecC----CCCCCCCHHHHHHHhcc----CCCCCE
Confidence 9987 488999999999999876554 456999999954 333444 8999999953 268999
Q ss_pred EEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCccc---c----cccc-CccEEEEcCcccCcCCCC--c
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSIKI---D----VKEI-GADFYVSNLHKWFFCPPS--V 261 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~~~---~----~~~~-~~d~~~~s~~K~l~g~~G--~ 261 (452)
|++++++||||.++|.+++.++++. +|+ ++|+|++|+.+...- . .... +.++++.|+||++ |++| +
T Consensus 145 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~ 222 (354)
T 3ly1_A 145 VYLVNPNNPTGTITPADVIEPWIASKPANT-MFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIH-AMAGMRV 222 (354)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHTCCTTE-EEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTT-CCGGGCC
T ss_pred EEEeCCCCCcCCCcCHHHHHHHHHhCCCCe-EEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhc-cChhhhh
Confidence 9999999999999999988888887 999 899999987543221 1 1122 4568999999974 5444 7
Q ss_pred EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 262 AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 262 G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
|++++++++++. + .... ...+++...+.++.++++... .++..+++++++++++.+.|.++
T Consensus 223 G~~~~~~~~~~~-~-~~~~-------------~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~ 283 (354)
T 3ly1_A 223 GYAVAHPTVIAL-M-GRYV-------------AGEKINFSGVDAALASMNDSA----FITYSKKSNDVSRQILLKALEDL 283 (354)
T ss_dssp EEEECCHHHHHH-H-GGGT-------------TCSCCCHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecCHHHHHH-H-HHhc-------------CCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999888777664 1 1110 012344444444444544322 46778888999999999999988
Q ss_pred cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 342 WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
++.+..+ . +.++++.++ . +..++.+.|.+ +||.++ +..+ ..++++|++++
T Consensus 284 -~~~~~~~-~--~~~~~~~~~-------~-~~~~~~~~l~~-~gi~v~-g~~~----------------~~~~~iRis~~ 333 (354)
T 3ly1_A 284 -KLPYLPS-E--GNFVFHQLV-------V-PLKDYQTHMAD-AGVLIG-RAFP----------------PADNWCRISLG 333 (354)
T ss_dssp -TCCBCCC-C--SSEEEEECS-------S-CHHHHHHHHHH-TTEECC-CCCT----------------TCTTEEEEECC
T ss_pred -CCeECCC-C--ceEEEEECC-------C-CHHHHHHHHHH-CCEEEe-ecCC----------------CCCCEEEEEcC
Confidence 7776533 2 567888886 2 56789999976 599987 4432 23579999987
Q ss_pred ccCCHHHHHHHHHHHHHHHhcc
Q 012991 422 VYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~~ 443 (452)
+++|+++++++|+++++.+
T Consensus 334 ---~~~~i~~~~~~l~~~l~~~ 352 (354)
T 3ly1_A 334 ---TPQEMQWVADTMREFRKKS 352 (354)
T ss_dssp ---CHHHHHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHHHHHHhh
Confidence 8999999999999998764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.4e-31 Score=257.14 Aligned_cols=326 Identities=14% Similarity=0.167 Sum_probs=238.2
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCCCcEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDVGEISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~i~~t~g~t 108 (452)
.++.+++|+.+.++ ..|+.+.+++.+.+... .. .|.......++++.++++++ ++ ++++++|+|++
T Consensus 27 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~--~y~~~~~~~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~~ 99 (370)
T 2z61_A 27 EGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEG----KT--HYTDSRGILELREKISELYKDKYKADII-PDNIIITGGSS 99 (370)
T ss_dssp TTCCCEECCCCSCSSCCCHHHHHHHHHHHHTT----CC--SCCCTTCCHHHHHHHHHHHHHHSSCCCC-GGGEEEESSHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHHcC----cc--CCCCCCCCHHHHHHHHHHHHHHhCCCCC-hhhEEECCChH
Confidence 35778999988775 35777999988876531 11 12222335667777777764 43 68999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDG 188 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 188 (452)
+|+.+++.++ +++||+|++++++|++....+ ...|.+++.++ .+ +++|++.+ .
T Consensus 100 ~a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~----~d-----~~~l~~~l------~ 152 (370)
T 2z61_A 100 LGLFFALSSI--------IDDGDEVLIQNPCYPCYKNFI----RFLGAKPVFCD----FT-----VESLEEAL------S 152 (370)
T ss_dssp HHHHHHHHHH--------CCTTCEEEEESSCCTHHHHHH----HHTTCEEEEEC----SS-----HHHHHHHC------C
T ss_pred HHHHHHHHHh--------cCCCCEEEEeCCCchhHHHHH----HHcCCEEEEeC----CC-----HHHHHHhc------c
Confidence 9999999987 478999999999999876654 44699999883 11 68899888 4
Q ss_pred CceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc---cccccc----cCccEEEEcCcccCcCCCC-
Q 012991 189 KMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE----IGADFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~----~~~d~~~~s~~K~l~g~~G- 260 (452)
+++++|++++++||||.++|.+ |.++|++||+ ++|+|++|+.+.. +.++.. .+.|+++.|+||+ +|++|
T Consensus 153 ~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~ 229 (370)
T 2z61_A 153 DKTKAIIINSPSNPLGEVIDRE-IYEFAYENIP-YIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKL-YAMTGW 229 (370)
T ss_dssp SSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCS-EEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTT-TTCGGG
T ss_pred cCceEEEEcCCCCCcCcccCHH-HHHHHHHcCC-EEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhc-cCCccc
Confidence 6789999999999999999999 9999999999 8999999986543 222222 3578999999997 56666
Q ss_pred -cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 -VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 -~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|++++++++++. + ... ...+.++.+...+.++.++++. ... ..+.++++++++++++.+.|
T Consensus 230 r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~~l~~~L 293 (370)
T 2z61_A 230 RIGYVISNDEIIEA-I-LKL-----------QQNLFISAPTISQYAALKAFEKETER---EINSMIKEFDRRRRLVLKYV 293 (370)
T ss_dssp CCEEEECCHHHHHH-H-HHH-----------HHHHTSSSCHHHHHHHGGGGSHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHHHH-H-HHH-----------HhhcccCCCHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 8999998877664 1 111 0111123444444444444443 222 46778888999999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.++ ++++..+.. +.++++.++ . +..++.+.|.+++||.+..+..+.. ..++++|+
T Consensus 294 ~~~-g~~~~~~~~--~~~~~~~~~-------~-~~~~~~~~l~~~~gi~v~~g~~f~~--------------~~~~~~Ri 348 (370)
T 2z61_A 294 KDF-GWEVNNPIG--AYYVFPNIG-------E-DGREFAYKLLKEKFVALTPGIGFGS--------------KGKNYIRI 348 (370)
T ss_dssp HHT-TCBCCCCCB--TTEECCBCS-------S-CHHHHHHHHHHHHCEECEEGGGGCG--------------GGSSBEEE
T ss_pred HHc-CCeecCCCc--ceEEEEecC-------C-CHHHHHHHHHHhCCEEEeCchhhCC--------------CCCCEEEE
Confidence 887 777665543 566777765 2 5678889887445999977655421 13579999
Q ss_pred cccccCCHHHHHHHHHHHHHHHh
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+++ +++++++++++.|+++++
T Consensus 349 ~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 349 SYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp ECC--SCHHHHHHHHHHHHHHHC
T ss_pred EEe--CCHHHHHHHHHHHHHHHh
Confidence 999 589999999999998874
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-30 Score=260.99 Aligned_cols=364 Identities=14% Similarity=0.086 Sum_probs=242.8
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch--h-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDD--F-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
-.||+..+.+..|..+... ++... .++.. + .+....++.+++++++++++|.+ .++++||+|||+|+..++.
T Consensus 109 p~~~~~~~~~~~~~~~~~~---~l~~~-~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~-~~~~~~t~ggtea~~~al~ 183 (515)
T 2jis_A 109 PRFFNQLFSGLDPHALAGR---IITES-LNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS-SGDGIFCPGGSISNMYAVN 183 (515)
T ss_dssp TTEESSSCCCCCHHHHHHH---HHHHH-HCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS-SCEEEEESSHHHHHHHHHH
T ss_pred CCeEEEeeCCCCHHHHHHH---HHHHH-hccCCCchhhchHHHHHHHHHHHHHHHHhCCC-CCCeEEcCCcHHHHHHHHH
Confidence 3589988888888766653 23222 22222 1 22445677888999999999997 6899999999999998888
Q ss_pred HhhcccccCCCC-CCC------EEEEeCCcchhHHHHHHHHHHhcCc---EEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 117 QIGRGFTEGRFH-RND------TVLMLHCAFQAVKKSIQAYVTRAGG---SVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 117 ~l~~~~~~~~~~-~g~------~Vl~~~~~~~s~~~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
++...+. ..++ +|+ +|+++..+|+++..++.. .|. +++.++ .++++.+ +++|+++|++..
T Consensus 184 ~ar~~~~-~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~----~g~g~~~v~~v~----~~~~~~~d~~~L~~~i~~~~ 254 (515)
T 2jis_A 184 LARYQRY-PDCKQRGLRTLPPLALFTSKECHYSIQKGAAF----LGLGTDSVRVVK----ADERGKMVPEDLERQIGMAE 254 (515)
T ss_dssp HHHHHHC-TTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH----TTSCGGGEEEEC----BCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHh-hHHhhcCccccCCeEEEECCCccHHHHHHHHH----cCCCCCcEEEEe----cCCCCcCCHHHHHHHHHHHH
Confidence 7632110 0011 343 899999999998877654 355 888884 3444555 899999886432
Q ss_pred cCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc-----cccc-CccEEEEcCcccCcCCC
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID-----VKEI-GADFYVSNLHKWFFCPP 259 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~l~g~~ 259 (452)
..+.+|++|++++++|++|.+.|+++|+++|+++|+ ++|+|++++.+....+ +..+ ++|++++|+|||+++|.
T Consensus 255 ~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~-~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~ 333 (515)
T 2jis_A 255 AEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL-WLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL 333 (515)
T ss_dssp HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC-EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS
T ss_pred hCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCC
Confidence 223469999999999999999999999999999999 6999999998877544 3333 78999999999988899
Q ss_pred CcEEEEEecC--cccc--CCCCCceeccCCCCcccc-cccccccCc-----cccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 260 SVAFLYCRKS--ILSS--DMHHPVVSHEFGNGLPIE-SAWIGTRDY-----SAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 260 G~G~l~~~~~--~~~~--~l~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
|+|+++++++ ++.. ....++.. +...... ....++... ....+++++++.+... |++++.++..+
T Consensus 334 g~G~l~~~~~~~~~~~~~~~~~~yl~---~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~--g~~~~~~~~~~ 408 (515)
T 2jis_A 334 QCSALLLQDTSNLLKRCHGSQASYLF---QQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQ--GLERRIDQAFV 408 (515)
T ss_dssp CCEEEEESCCSCHHHHHHCC------------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CeeEEEEeChHHHHHHHhcCCchhcc---CCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHH--HHHHHHHHHHH
Confidence 9999999877 4432 01122221 1100000 000111111 1123344455555543 78899999999
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEc-CCcccc---CChhh------HHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGL-PSRLRV---MGEDD------ALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~------~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
+++++.+.|.+++++++..++. ...++|.. |..... ..... ...+.+.|.+. |+.+......
T Consensus 409 ~a~~l~~~L~~~~g~~~~~~~~--~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~----- 480 (515)
T 2jis_A 409 LARYLVEEMKKREGFELVMEPE--FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH----- 480 (515)
T ss_dssp HHHHHHHHHHTSTTEEESSCCS--SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-----
T ss_pred HHHHHHHHHhcCCCEEEeCCCC--eeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-----
Confidence 9999999999988888876643 34566654 311000 00110 12366677665 7644211110
Q ss_pred CCCCCCCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHh
Q 012991 400 QPQAGARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~ 441 (452)
....+++|+++ +.++|++||++++++|+++.+
T Consensus 481 ----------~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 481 ----------GTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp ----------TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred ----------CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 12246899999 789999999999999998875
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=254.43 Aligned_cols=339 Identities=17% Similarity=0.147 Sum_probs=239.9
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCc-EEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGE-ISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~-i~~t~g~t~a 110 (452)
+++++|+.+.+. ..|+.+.+++.+.+... ... |.......++++.+++++ |.+ ++++ +++|+||++|
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~--y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a 99 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKG----LTH--YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQA 99 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTT----CCS--CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHH
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCC----CCC--CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHH
Confidence 578999888765 46777999988876531 111 222223456666666666 842 3578 9999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++||+|++++++|++....+ +..|.+++.++++. ++...+ +++|++++ .+
T Consensus 100 ~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l------~~ 159 (389)
T 1gd9_A 100 FLMGLSAF--------LKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVPTYE--EDEFRLNVDELKKYV------TD 159 (389)
T ss_dssp HHHHHTTT--------CCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEECCG--GGTTCCCHHHHHHHC------CT
T ss_pred HHHHHHHh--------CCCCCEEEEcCCCchhHHHHH----HHCCCEEEEeccCC--ccCCCCCHHHHHHhc------Cc
Confidence 99999875 478999999999999976655 44599999996531 111223 89999998 45
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~l~g~ 258 (452)
++++|++++++||||.++| +++|+++|++||+ ++|+|++++.+.. ..++.. .+.|+++.|+||+ +|+
T Consensus 160 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~ 237 (389)
T 1gd9_A 160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDL-IVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKT-FAM 237 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTT-TTC
T ss_pred CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhh-cCC
Confidence 7899999999999999985 8889999999999 7999999987543 122222 3568999999997 566
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + .... .....+.+...+.++.++++.... ....+.++++++++++++.+
T Consensus 238 ~G~r~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~ 303 (389)
T 1gd9_A 238 TGWRLGFVAAPSWIIER-M-VKFQ-----------MYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWK 303 (389)
T ss_dssp GGGCCEEEECCHHHHHH-H-HHHH-----------TTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECHHHHHH-H-HHHH-----------hhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHH
Confidence 66 6999998877664 1 1110 000123333344444444443221 01367788889999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++ ++++..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.. ..++++
T Consensus 304 ~L~~~-g~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------~~~~~i 361 (389)
T 1gd9_A 304 RLNEM-GLPTVKPKG--AFYIFPRIRD-----TGLTSKKFSELMLKEARVAVVPGSAFGK--------------AGEGYV 361 (389)
T ss_dssp HHHHT-TCCCCCCCB--TTEECCBCGG-----GTCCHHHHHHHHHHHTCEECEEGGGGCG--------------GGTTBE
T ss_pred HHHHc-CCeecCCCe--eeEEEEeccC-----CCCCHHHHHHHHHHhCCEEEeCchhhCC--------------CCCCeE
Confidence 99987 777765543 5567777651 1346778999987446999977655421 235799
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++. +++++++++++|+++++.
T Consensus 362 Ri~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 362 RISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp EEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred EEEecC--CHHHHHHHHHHHHHHHHh
Confidence 999985 899999999999998865
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=257.93 Aligned_cols=355 Identities=12% Similarity=0.114 Sum_probs=248.7
Q ss_pred CHHHHHhhhccCC--------CCe-EEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHh
Q 012991 25 SEAEIRDEFSHHQ--------HGV-ARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLI 93 (452)
Q Consensus 25 ~~~~ir~~~~~~~--------~~~-~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~ 93 (452)
+++.+|+.||... +.+ .|+++...+ ..++.+.+++.+.+.....+++.+ ..+...+...++++++++++
T Consensus 25 ~~~~~~~~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~ 104 (401)
T 2bwn_A 25 DIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH 104 (401)
T ss_dssp EEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT
T ss_pred hhhcccccccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh
Confidence 3456788898642 233 355544434 234569999999887654433321 22345577899999999999
Q ss_pred CCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 94 NADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 94 ~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
+.+ +++++++|++ ++..++.++. ...+||+|+++.++|+++..++. ..|.+++.++ .++
T Consensus 105 ~~~--~~i~~~sG~~-a~~~~~~~l~------~~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~v~----~~d---- 163 (401)
T 2bwn_A 105 QKE--AALVFSSAYN-ANDATLSTLR------VLFPGLIIYSDSLNHASMIEGIK----RNAGPKRIFR----HND---- 163 (401)
T ss_dssp TCS--EEEEESCHHH-HHHHHHHHHH------HHSTTCEEEEETTCCHHHHHHHH----HSCCCEEEEC----TTC----
T ss_pred CCC--cEEEECCcHH-HHHHHHHHHh------cCCCCCEEEECchhhHHHHHHHH----HcCCeEEEEc----CCC----
Confidence 984 7777766655 7777766542 12588999999999999877764 4699999984 332
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-----c-cccc--cCcc
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK-----I-DVKE--IGAD 245 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~-~~~~--~~~d 245 (452)
.+++++.+++.. .+++++|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|... + .... ...|
T Consensus 164 ~~~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~ 240 (401)
T 2bwn_A 164 VAHLRELIAADD--PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGA-LTYIDEVHAVGMYGPRGAGVAERDGLMHRID 240 (401)
T ss_dssp HHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTTTTTSSTTSCCHHHHHTCGGGCS
T ss_pred HHHHHHHHHhhc--cCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCC-EEEEeccccccccCCCCceeeeccCccccCc
Confidence 567777775421 1478999999999999999999999999999999 79999999965421 1 1111 1358
Q ss_pred EEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHH
Q 012991 246 FYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQ 325 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~ 325 (452)
+++.|++|+ +|++| |+++.++++.+. + ..... .. .+..++++ ..+.++.++++++.+. |++.+++
T Consensus 241 i~~~s~sK~-~~~~G-G~~~~~~~~~~~-l-~~~~~-------~~-~~~~~~~~-~~~~a~~~al~~~~~~--~~~~~~~ 305 (401)
T 2bwn_A 241 IFNGTLAKA-YGVFG-GYIAASARMVDA-V-RSYAP-------GF-IFSTSLPP-AIAAGAQASIAFLKTA--EGQKLRD 305 (401)
T ss_dssp EEEEESSST-TCSCC-EEEEECHHHHHH-H-HHHCH-------HH-HTSBCCCH-HHHHHHHHHHHHHTSH--HHHHHHH
T ss_pred EEEeechhh-ccCCC-CEEecCHHHHHH-H-HHhCc-------Cc-eecCCCCH-HHHHHHHHHHHHHHhc--ccHHHHH
Confidence 899999997 56566 888887766553 1 10000 00 00113333 4555666777777643 5688999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCC
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGA 405 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~ 405 (452)
+++++++++.+.|.++ ++++..+. ++++++.++ .+.+..++.+.|.+++||.+..+..+..
T Consensus 306 ~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~~~------~~~~~~~~~~~L~~~~gi~v~~~~~~~~--------- 366 (401)
T 2bwn_A 306 AQQMHAKVLKMRLKAL-GMPIIDHG---SHIVPVVIG------DPVHTKAVSDMLLSDYGVYVQPINFPTV--------- 366 (401)
T ss_dssp HHHHHHHHHHHHHHHH-TCCBCCCS---SSCEEEECC------CHHHHHHHHHHHHHHHCEECCEECTTTS---------
T ss_pred HHHHHHHHHHHHHHHC-CCcccCCC---CCeEEEEeC------ChHHHHHHHHHHHhcCCEEEeecCCCCC---------
Confidence 9999999999999988 88776543 458888886 3456778999986345999976543311
Q ss_pred CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 406 RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 406 ~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
....+++|++++.++|++|+++++++|+++++
T Consensus 367 ----~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 367 ----PRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp ----CTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred ----CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 01235899999999999999999999998864
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=261.92 Aligned_cols=366 Identities=14% Similarity=0.085 Sum_probs=246.0
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+-.||+....++.++.+.+++..... +.+...+ ......++.+++++++++++|.++.+.++||+|||+|+..++.+
T Consensus 100 ~~~yl~~~~~~~~~~~v~~~~~~~~~--n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ 177 (497)
T 2qma_A 100 HPDCIAHLHTPPLMPAVAAEAMIAAL--NQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLML 177 (497)
T ss_dssp STTBCSSSCCCCBHHHHHHHHHHHHH--CCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHH
T ss_pred CCCeeEeCCCCCcHHHHHHHHHHHhh--cccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHH
Confidence 34699999999999999888865543 2222221 12344566777899999999996347999999999999999987
Q ss_pred hhcccc---------cCCCCC--CC-EEEEeCCcchhHHHHHHHHHHhcCc---EEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 118 IGRGFT---------EGRFHR--ND-TVLMLHCAFQAVKKSIQAYVTRAGG---SVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 118 l~~~~~---------~~~~~~--g~-~Vl~~~~~~~s~~~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
+...+. +.-..+ ++ +|+++..+|.++..++.. .|. +++.++ .++++.+ +++|++++
T Consensus 178 ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~----~g~g~~~v~~v~----~~~~~~~d~~~L~~~i 249 (497)
T 2qma_A 178 ARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASW----MGLGEKAVMTVD----ANADGTMDITKLDEVI 249 (497)
T ss_dssp HHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHH----TTSCGGGEEEEC----BCTTSSBCGGGHHHHH
T ss_pred HHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHH----cCCCcccEEEEe----cCCCCcCCHHHHHHHH
Confidence 421110 000111 45 899999999998877654 344 788884 3444444 78888888
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc----cccc-CccEEEEcCcccCc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID----VKEI-GADFYVSNLHKWFF 256 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~----~~~~-~~d~~~~s~~K~l~ 256 (452)
++....+.++.+|++++++|++|.+.|+++|+++|++||+ ++|+|++++.+..+.+ +..+ ++|++++|+|||++
T Consensus 250 ~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~-~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~ 328 (497)
T 2qma_A 250 AQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDM-WMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFY 328 (497)
T ss_dssp HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC-EEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTC
T ss_pred HHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCC-EEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccC
Confidence 6422112235689999999999999999999999999999 6999999988776554 2233 68999999999999
Q ss_pred CCCCcEEEEEecCc-cccCCCC--CceeccCCCCc----ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 257 CPPSVAFLYCRKSI-LSSDMHH--PVVSHEFGNGL----PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 257 g~~G~G~l~~~~~~-~~~~l~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
+|.|+|+++++++. +.. +.. .++. .... .......++..+ ..+++.++++.+.. +|++.+.++..+
T Consensus 329 ~p~~~G~l~~~~~~~~~~-~~~~~~yl~---~~~~~~~~~~~~~~~~~r~~-~al~~~~~l~~lg~--~g~~~~~~~~~~ 401 (497)
T 2qma_A 329 QTISCGALLVNDKSNFKF-LLHHADYLN---REHDELPNLVDKSIATTKRF-DALKVFMTMQNVGP--KALGDMYDHLLA 401 (497)
T ss_dssp CCSSCEEEEESCGGGGGG-GCC-----------------------CCSCCC-THHHHHHHHHHTCH--HHHHHHHHHHHH
T ss_pred CCcceEEEEEeCHHHHHH-hcCCchhcC---CccccCCCccccCCCCCCch-hHHHHHHHHHHhCH--HHHHHHHHHHHH
Confidence 99999999998654 332 211 1110 0000 000000011111 12234445555443 267888999999
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++++.+.|.+++++++..++. .++++|.++.... ....-..++.+.|.++ |+.+..+...
T Consensus 402 ~a~~l~~~L~~~~~~~~~~~~~--~~~v~f~~~~~~~-~~~~l~~~l~~~l~~~-G~~~~~~~~~--------------- 462 (497)
T 2qma_A 402 QTLEVADMIRTNDQFELLAEPS--LSTVLFRATHETA-DLDELNKALRLEALTR-GIAVLGETIV--------------- 462 (497)
T ss_dssp HHHHHHHHHHTCTTEEECSCCS--SSEEEEEECCSSS-CHHHHHHHHHHHHHHH-TSCBCEEEEE---------------
T ss_pred HHHHHHHHHhhCCCeEEEcCCC--ceEEEEEEcCCcc-CHHHHHHHHHHHHHhC-CCEEEEeeEE---------------
Confidence 9999999999888888765544 5688888752100 0000124577777665 8877433221
Q ss_pred CCccceEEecc-cccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISH-QVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+++|+++ +.++|++||+++++.|++++++
T Consensus 463 -~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 463 -DGKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp -TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2246899998 7889999999999999998754
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=257.39 Aligned_cols=330 Identities=15% Similarity=0.180 Sum_probs=236.8
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t~ 109 (452)
.++.+++|+.+.+. ..|+.+.+++.+.+... ... |.......++++.+++++ |++ +++++++|+|+|+
T Consensus 39 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~--y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~ 112 (389)
T 1o4s_A 39 KGEDVINLTAGEPDFPTPEPVVEEAVRFLQKG----EVK--YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQ 112 (389)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHTTC----CCC--CCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHhcC----CCC--CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHH
Confidence 46788999888765 45777899888776421 111 222233566677777766 753 3689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ +++||+|++++++|++....+ +..|.+++.++.+. ++...+ +++|++++ .
T Consensus 113 al~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l------~ 172 (389)
T 1o4s_A 113 ALFNAFMAL--------LDPGDEVIVFSPVWVSYIPQI----ILAGGTVNVVETFM--SKNFQPSLEEVEGLL------V 172 (389)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECCG--GGTTCCCHHHHHHTC------C
T ss_pred HHHHHHHHh--------CCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEecCC--ccCCCCCHHHHHHhc------c
Confidence 999999987 478999999999999976554 45699999996521 111223 89999988 4
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc---ccccc----cCccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK---IDVKE----IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~~~~~----~~~d~~~~s~~K~l~g~ 258 (452)
+++++|++++++||||.++| +++|+++|+++|+ ++|+|++++.+... .++.. .+.|+++.|+||+ +|+
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~-~~~ 250 (389)
T 1o4s_A 173 GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNF-YIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKS-HSM 250 (389)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTT-TTC
T ss_pred cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhh-cCC
Confidence 67999999999999999988 8899999999999 89999999865431 12211 3679999999997 566
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + .... .....+.+.. +..++...+.. +.+.++++++++++++.+
T Consensus 251 ~G~r~G~l~~~~~~~~~-l-~~~~-----------~~~~~~~~~~---~~~a~~~~l~~---~~~~~~~~~~~~~~~l~~ 311 (389)
T 1o4s_A 251 TGWRVGYLISSEKVATA-V-SKIQ-----------SHTTSCINTV---AQYAALKALEV---DNSYMVQTFKERKNFVVE 311 (389)
T ss_dssp GGGCCEEEECCHHHHHH-H-HHHH-----------HHHTCSCCHH---HHHHHHHHTTC---CCHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEeCHHHHHH-H-HHHh-----------hhcccCCCHH---HHHHHHHHHhc---cHHHHHHHHHHHHHHHHH
Confidence 66 7999998877654 1 1110 0001112222 22333334332 578888999999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++ ++++..+.. +.++++.++ .+..++.+.|.+++||.+..+..+. .++++
T Consensus 312 ~L~~~-g~~~~~~~~--~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~f~----------------~~~~~ 364 (389)
T 1o4s_A 312 RLKKM-GVKFVEPEG--AFYLFFKVR--------GDDVKFCERLLEEKKVALVPGSAFL----------------KPGFV 364 (389)
T ss_dssp HHHHT-TCCCCCCSB--SSEEEEECS--------SCHHHHHHHHHHHHCEECEEGGGGT----------------CTTEE
T ss_pred HHHhc-CCeeecCCc--ceEEEEeCC--------CCHHHHHHHHHHHCCEEEeCchhcC----------------CCCeE
Confidence 99987 777765543 566777764 2467888888634599997765541 14699
Q ss_pred EecccccCCHHHHHHHHHHHHHHHh
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~ 441 (452)
|++++. ++++++++++.|+++++
T Consensus 365 Ris~~~--~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 365 RLSFAT--SIERLTEALDRIEDFLN 387 (389)
T ss_dssp EEECCS--CHHHHHHHHHHHHHHHT
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHh
Confidence 999984 89999999999998874
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=254.83 Aligned_cols=348 Identities=9% Similarity=0.059 Sum_probs=248.8
Q ss_pred HHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC--CCCCCcEE
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN--ADDVGEIS 102 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~i~ 102 (452)
++...+.|. +.++++|+.+..+ +.|+.+.+++.+.+.. ....+.....+..+++++.+++.+| ++ +++++
T Consensus 22 ~d~~~~~~~--~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~y~~~~~~~~~~l~~~l~~~~g~~~~-~~~v~ 94 (391)
T 4dq6_A 22 WSEMEKKYG--TNDLLPMWVADMDFKAAPCIIDSLKNRLEQ----EIYGYTTRPDSYNESIVNWLYRRHNWKIK-SEWLI 94 (391)
T ss_dssp HHCHHHHHS--CSCSEECCSSSCSSCCCHHHHHHHHHHHTT----CCCCCBCCCHHHHHHHHHHHHHHHCCCCC-GGGEE
T ss_pred eeecccccC--CCCceeccccCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCHHHHHHHHHHHHHHhCCCCc-HHHeE
Confidence 455555563 4788999888765 6678899999887643 1122233446778899999999999 54 68999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCC-CCCCChHHH-HHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLP-FPLASEEEI-INEFKKG 180 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~-~~~l~~~ 180 (452)
+|+|+|+|+.+++.++ .++||+|+++.++|++....+ ...|.+++.+++. +. +....+ +++++++
T Consensus 95 ~~~g~~~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~-~~~~~~d~~~l~~~ 161 (391)
T 4dq6_A 95 YSPGVIPAISLLINEL--------TKANDKIMIQEPVYSPFNSVV----KNNNRELIISPLQKLE-NGNYIMDYEDIENK 161 (391)
T ss_dssp EESCHHHHHHHHHHHH--------SCTTCEEEECSSCCTHHHHHH----HHTTCEEEECCCEECT-TSCEECCHHHHHHH
T ss_pred EcCChHHHHHHHHHHh--------CCCCCEEEEcCCCCHHHHHHH----HHcCCeEEeeeeeecC-CCceEeeHHHHHHH
Confidence 9999999999999987 478999999999999876655 4569999988543 11 111223 8999999
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccccC-----ccEEE
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEIG-----ADFYV 248 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~~-----~d~~~ 248 (452)
+ .+ +++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ..++.... .++++
T Consensus 162 l------~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~ 233 (391)
T 4dq6_A 162 I------KD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNV-KIISDEIHSDIILKKHKHIPMASISKEFEKNTITC 233 (391)
T ss_dssp C------TT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEE
T ss_pred h------hc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCC-EEEeeccccccccCCCCccCHHHcCccccCcEEEE
Confidence 9 45 999999999999999954 7788899999999 8999999976332 22333332 33888
Q ss_pred EcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHH
Q 012991 249 SNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQ 325 (452)
Q Consensus 249 ~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~ 325 (452)
.|+||++ |++| +|++++++ ++.+. + .... .....++++...+.++.++++.... ..+.+++
T Consensus 234 ~s~sK~~-g~~G~r~G~~~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~ 297 (391)
T 4dq6_A 234 MAPTKTF-NIAGLQSSYVVLPDEKDYKL-L-DDAF----------TRIDIKRNNCFSLVATEASYNNGES---WLESFLE 297 (391)
T ss_dssp ECSHHHH-TCGGGCCEEEECCSHHHHHH-H-HHHH----------HHTTCCCCCHHHHHHHHHHHHHCHH---HHHHHHH
T ss_pred Eechhhc-cCcccceEEEEeCCHHHHHH-H-HHHH----------HhhcCCCCCHHHHHHHHHHHhchHH---HHHHHHH
Confidence 9999974 4444 78888876 55543 1 1110 0001134444444444445544222 3677888
Q ss_pred HHHHHHHHHHHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCC
Q 012991 326 RNHEQALKMARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG 404 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~ 404 (452)
+.+++++++.+.|.+ ++++.+..+.. +.++++.++. .+.+..++.+.|.+++||.+.++..+..
T Consensus 298 ~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------- 362 (391)
T 4dq6_A 298 YLESNIDFAIKYINENMPKLKVRKPEG--TYLLWVDFSA-----LGLSDEELESILVQKGKVALNQGNSFGI-------- 362 (391)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEECCCSB--SSEEEEECGG-----GCCCHHHHHHHHHHTTCEECEEGGGGCT--------
T ss_pred HHHHHHHHHHHHHHhhCCCCEecCCCc--cEEEEEEhhh-----cCCCHHHHHHHHHHhCCEEeeCchhhCC--------
Confidence 899999999999988 57887766554 5566677752 1346788999997756999987665422
Q ss_pred CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 405 ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 405 ~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
...+++|++++ ++++++++++++|++++
T Consensus 363 ------~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 363 ------GGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp ------TCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred ------CCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 23579999998 58999999999999876
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=252.22 Aligned_cols=341 Identities=13% Similarity=0.092 Sum_probs=239.5
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CC-CcEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DV-GEISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~-~~i~~t~g~t 108 (452)
.+..+++|+.+... ..++.+.+++.+.+... ....|.......++++.+++++ |.+ ++ ++|++|+|++
T Consensus 35 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~-----~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~ 109 (412)
T 2x5d_A 35 RGEDIIDLSMGNPDGPTPPHIVEKLCTVAQRE-----DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSK 109 (412)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHTC--------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHH
T ss_pred cCCCEEecCCCCCCCCCCHHHHHHHHHHHhCC-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChH
Confidence 46778999887765 35677888888765432 0112222344567777888877 753 25 6999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+|+.+++.++ +++||+|+++.++|++....+. ..|.+++.++... +....+ +++|++++
T Consensus 110 ~a~~~~~~~~--------~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~--~~~~~~d~~~l~~~i------ 169 (412)
T 2x5d_A 110 EGLAHLMLAT--------LDHGDTILVPNPSYPIHIYGAV----IAGAQVRSVPLVP--GIDFFNELERAIRES------ 169 (412)
T ss_dssp HHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHHH----HHTCEEEEEECST--TSCHHHHHHHHHHTE------
T ss_pred HHHHHHHHHh--------CCCCCEEEEcCCCchhHHHHHH----HcCCEEEEeecCC--ccCCCCCHHHHHHhc------
Confidence 9999999987 4789999999999998766654 4599999986531 112234 88899888
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEcCcccCc
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSNLHKWFF 256 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~l~ 256 (452)
.+++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ..++.. .+.|+++.|+||+ +
T Consensus 170 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~-~ 247 (412)
T 2x5d_A 170 IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDV-MVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKS-Y 247 (412)
T ss_dssp ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-C-C
T ss_pred ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEeccccccccCCCCCCChhhccCccCcEEEEecCccc-c
Confidence 467899999999999999987 5788999999999 8999999987542 122222 3568999999997 5
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|++| +|++++++++++. + ... ......+.+...+.++.++++... ..++.++++++++++++
T Consensus 248 ~~~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l 311 (412)
T 2x5d_A 248 NMAGWRIGFMVGNPELVSA-L-ARI-----------KSYHDYGTFTPLQVAAIAALEGDQ---QCVRDIARQYQQRRDVL 311 (412)
T ss_dssp SCTTSCCEEEEECHHHHHH-H-HHH-----------HHHHCCCCCHHHHHHHHHHHHSCS---HHHHHHHHHHHHHHHHH
T ss_pred CCcccceEEEEcCHHHHHH-H-HHH-----------HhhhccCCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHH
Confidence 5555 7999998877764 1 111 000112333334333333333211 13677888899999999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChh---hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGED---DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
.+.|.++ ++.+..+.. +.++++.++. +. +..++.+.|.+++||.+..+..+.. .
T Consensus 312 ~~~L~~~-g~~~~~~~~--g~~~~~~~~~------~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--------------~ 368 (412)
T 2x5d_A 312 VKGLREA-GWMVENPKA--SMYVWAKIPE------PYAHLGSLEFAKKLLQDAKVSVSPGIGFGD--------------Y 368 (412)
T ss_dssp HHHHHHH-TCCCCCCSB--SSEEEEECCT------TTGGGCHHHHHHHHHHHHCEECEEGGGGCG--------------G
T ss_pred HHHHHHC-CCEecCCCe--eeEEEEEcCC------ccCCCCHHHHHHHHHHHCCEEEeCchhhCC--------------C
Confidence 9999988 777765543 5678888862 33 5678888886546999987665421 2
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
.++++|++++. ++++++++++.|+++++...
T Consensus 369 ~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 369 GDDHVRFALIE--NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp GTTEEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEecC--CHHHHHHHHHHHHHHHHhcC
Confidence 35799999996 89999999999999987543
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=252.65 Aligned_cols=337 Identities=11% Similarity=0.125 Sum_probs=242.3
Q ss_pred CCCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhc-CCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSF-G-SCPKSVLADQQKWQLKFLQ-QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
+..++.|..+.. + +.++.+.+++.+.+..... ++...+.+...+...++++.+++++|++ +.+++++||+++..
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~ 114 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYS---RALLFISGFAANQA 114 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHH
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC---cEEEeCCcHHHHHH
Confidence 445666666553 5 4678899999988865421 1122233344577899999999999984 46666777999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ .++||.|+++.+.|.+...++ ...|.+++.++ ..+ .++|++.+++. .+++++
T Consensus 115 ~~~~~--------~~~gd~v~~~~~~~~~~~~~~----~~~g~~~~~~~----~~d----~~~l~~~l~~~---~~~~~~ 171 (384)
T 1bs0_A 115 VIAAM--------MAKEDRIAADRLSHASLLEAA----SLSPSQLRRFA----HND----VTHLARLLASP---CPGQQM 171 (384)
T ss_dssp HHHHH--------CCTTCEEEEETTCCHHHHHHH----HTSSSEEEEEC----TTC----HHHHHHHHHSC---CSSCEE
T ss_pred HHHHh--------CCCCcEEEEcccccHHHHHHH----HHcCCCEEEeC----CCC----HHHHHHHHHhc---CCCCeE
Confidence 99876 478999999999999876665 44699999884 322 67888888642 224789
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---c---cccccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---I---DVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~---~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
|++++++||||.+.|+++|.++|++||+ ++|+|++|+.+... . +....++|+++.|+||+ +++.| |+++++
T Consensus 172 v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~-~~~~G-G~~~~~ 248 (384)
T 1bs0_A 172 VVTEGVFSMDGDSAPLAEIQQVTQQHNG-WLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKG-FGVSG-AAVLCS 248 (384)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHTTC-EEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSST-TSSCC-EEEEEC
T ss_pred EEEeCCCCCCCCccCHHHHHHHHHHcCc-EEEEECCcccceecCCCCchHHhcCCCCcEEEeeccch-hhccC-cEEEeC
Confidence 9999999999999999999999999999 79999999876532 1 11123589999999997 56888 999998
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + ..... .....++.+...+.++.++++.+.+. ..+.++++++++++++.+.|.++ ++++.
T Consensus 249 ~~~~~~-l-~~~~~---------~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (384)
T 1bs0_A 249 STVADY-L-LQFAR---------HLIYSTSMPPAQAQALRASLAVIRSD--EGDARREKLAALITRFRAGVQDL-PFTLA 314 (384)
T ss_dssp HHHHHH-H-HHHCH---------HHHSSBCCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHHHHTTS-SCEEC
T ss_pred HHHHHH-H-HHhch---------hhhcCCCCCHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence 877664 1 11000 00011234444555555566665521 24678888999999999999886 66654
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
. . .++++++.++ .+.+..++.+.|.++ ||.+..+..+.. ....+++|++++..++++
T Consensus 315 ~-~--~~~~~~~~~~------~~~~~~~l~~~l~~~-gi~v~~~~~~~~-------------~~~~~~~Ri~~~~~~~~~ 371 (384)
T 1bs0_A 315 D-S--CSAIQPLIVG------DNSRALQLAEKLRQQ-GCWVTAIRPPTV-------------PAGTARLRLTLTAAHEMQ 371 (384)
T ss_dssp S-C--CSSBCCEEEE------SHHHHHHHHHHHHHT-TEECCEECTTSS-------------CTTCEEECCBCCTTCCHH
T ss_pred C-C--CCCEEEEEeC------CHHHHHHHHHHHHHC-CcEEEeecCCCC-------------CCCCceEEEEEcCCCCHH
Confidence 2 2 2567777775 345678899999775 999976554311 123478999999888999
Q ss_pred HHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILL 439 (452)
Q Consensus 428 di~~l~~~l~~~ 439 (452)
|+++++++|+++
T Consensus 372 ~i~~~~~~l~~~ 383 (384)
T 1bs0_A 372 DIDRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=255.95 Aligned_cols=335 Identities=16% Similarity=0.139 Sum_probs=235.5
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t~ 109 (452)
.++.+++|+.+.+. +.|+.+.+++.+.+... ... |....+..++++.+++++ |.+ ++++|++|+|+++
T Consensus 29 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~--y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~ 102 (385)
T 1b5p_A 29 QGVDLVALTAGEPDFDTPEHVKEAARRALAQG----KTK--YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQ 102 (385)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTT----CCS--CCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHH
T ss_pred cCCCEEEecCCCCCCCCCHHHHHHHHHHHhcC----CCC--CCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHH
Confidence 45678999887765 45677888887766431 111 222233456666677666 432 3679999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ +++||+|+++.|+|++....+ +..|.+++.++++. ++...+ ++++++++ .
T Consensus 103 al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l------~ 162 (385)
T 1b5p_A 103 ALFNLFQAI--------LDPGDEVIVLSPYWVSYPEMV----RFAGGVVVEVETLP--EEGFVPDPERVRRAI------T 162 (385)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEECCG--GGTTCCCHHHHHTTC------C
T ss_pred HHHHHHHHh--------cCCCCEEEEcCCCchhHHHHH----HHcCCEEEEeecCc--ccCCCCCHHHHHHhc------C
Confidence 999999987 589999999999998865554 45699999996521 111223 78999888 5
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccccc--CccEEEEcCcccCcCCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKEI--GADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~~--~~d~~~~s~~K~l~g~~G 260 (452)
+++++|++++++||||.++| +++|+++|++||+ ++|+|++++.... ..++..+ +.++++.|+||+ +|++|
T Consensus 163 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~-~~~~G 240 (385)
T 1b5p_A 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDF-YLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKA-FAMTG 240 (385)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTT-TTCGG
T ss_pred CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCC-EEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhh-cCCcc
Confidence 67999999999999999987 7789999999999 8999999875432 1122222 557889999996 77667
Q ss_pred --cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH---HHHhhcCHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF---VSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 261 --~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
+|++++++++++. + .... .....+.+...+.++.++++. ... .++.++++++++++++.
T Consensus 241 ~RiG~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~ 304 (385)
T 1b5p_A 241 WRIGYACGPKEVIKA-M-ASVS-----------RQSTTSPDTIAQWATLEALTNQEASRA---FVEMAREAYRRRRDLLL 304 (385)
T ss_dssp GCCEEEECCHHHHHH-H-HHHH-----------HTTTCSCCHHHHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCHHHHHH-H-HHHH-----------hhccCCCCHHHHHHHHHHHhCCCcchH---HHHHHHHHHHHHHHHHH
Confidence 8999998777654 1 1110 000112333333334444432 222 36778888899999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.++ ++++..++. +.++++.++. .+.+..++.+.|.+ +||.+..+..+. . +++
T Consensus 305 ~~L~~~-g~~~~~~~~--~~~~~~~~~~-----~~~~~~~l~~~l~~-~gv~v~~g~~f~---------------~-~~~ 359 (385)
T 1b5p_A 305 EGLTAL-GLKAVRPSG--AFYVLMDTSP-----IAPDEVRAAERLLE-AGVAVVPGTDFA---------------A-FGH 359 (385)
T ss_dssp HHHHHH-TCCBCCCSB--TTEEEEECTT-----TCSSHHHHHHHHHH-TTEECEESGGGT---------------C-TTE
T ss_pred HHHHHC-CCeecCCCe--eEEEEEecCC-----CCCCHHHHHHHHHH-CCeEEecccccC---------------C-CCe
Confidence 999988 887766554 5677777641 13467789999875 599998765541 1 479
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHh
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+|+|++ ++.++++++++.|+++++
T Consensus 360 iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 360 VRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp EEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHh
Confidence 999998 589999999999887664
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=251.94 Aligned_cols=334 Identities=11% Similarity=0.114 Sum_probs=238.3
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
.+.++||+++..++.|+.+.+++.+.+.. +. ......+..+++++++++++|.+ ++++++|+|||+|+..++.
T Consensus 12 ~p~~i~l~~~~~~~~~~~v~~a~~~~~~~---~~---~~~g~~~~~~~~~~~l~~~~g~~-~~~v~~~~g~t~a~~~~~~ 84 (359)
T 1svv_A 12 KPKPYSFVNDYSVGMHPKILDLMARDNMT---QH---AGYGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACS 84 (359)
T ss_dssp ---CEECSCSCSSCCCHHHHHHHHHHTTC---CC---CSTTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHH
T ss_pred CCeeEEecCCCcCCCCHHHHHHHHHHHhh---cc---ccccccHHHHHHHHHHHHHhCCC-CccEEEeCCchHHHHHHHH
Confidence 34589999988888889999999887642 11 12334677899999999999985 7899999999999999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc-cCCCceEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK-KDGKMIRLA 194 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~-~~~~~~~lv 194 (452)
++ .++||+|++++++|+++..+ . .+...|.+++.++. + ++.+ +++|++.+++.. .++.++++|
T Consensus 85 ~~--------~~~gd~vl~~~~~~~~~~~~-~-~~~~~g~~~~~v~~----~-~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 85 LA--------LRPWEAVIATQLGHISTHET-G-AIEATGHKVVTAPC----P-DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp HH--------CCTTEEEEEETTSHHHHSST-T-HHHHTTCCEEEECC----T-TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred HH--------hCCCCEEEEcccchHHHHHH-H-HHhcCCCeeEEEeC----C-CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 87 47899999999999987653 1 13556999999953 3 2334 889999886420 112358999
Q ss_pred EEeccCCCCccccc---HHHHHHHHHHcCCCEEEEeccc---ccCCccccccc----cCccEEEEcCcccCcCCCCcEEE
Q 012991 195 IIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAH---AMGSIKIDVKE----IGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 195 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~---~~g~~~~~~~~----~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
+++++ ||||.++| +++|.++|++||+ ++|+|+++ +.|..+.+... ..+|++++|++|+ +++.|.|++
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l 226 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGL-YLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALI 226 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTC-EEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEE
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCC-EEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEE
Confidence 99998 78999998 8889999999999 79999998 55655544332 3579999999996 888889999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. + .+... .+... .........+ ....+.. ++++.++++++++++++.+.| +.+++
T Consensus 227 ~~~~~~~~~-~-~~~~~--~~~~~-------~~~~~~~~~~---~~~~l~~--~~~~~~~~~~~~~~~~l~~~L-~~~~~ 289 (359)
T 1svv_A 227 ILNDALKPN-A-RHLIK--QRGAL-------MAKGWLLGIQ---FEVLMKD--NLFFELGAHSNKMAAILKAGL-EACGI 289 (359)
T ss_dssp ECSGGGCTT-H-HHHHH--HTTCC-------CTTTHHHHHH---HHHHTST--THHHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred EEcccHHHH-H-HHHHh--cCCcc-------cccchhhHHH---HHHHHhh--hhHHHHHHHHHHHHHHHHHHh-ccCCe
Confidence 998887765 2 11100 00000 0000011111 1222332 256788899999999999999 66788
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
++..+.. ++++++.++ .++.+.|.+++||.+.. ... ..++++|++++..+
T Consensus 290 ~~~~~~~--~~~~~~~~~-----------~~~~~~l~~~~gi~v~~-~~~----------------~~~~~iRi~~~~~~ 339 (359)
T 1svv_A 290 RLAWPSA--SNQLFPILE-----------NTMIAELNNDFDMYTVE-PLK----------------DGTCIMRLCTSWAT 339 (359)
T ss_dssp CBSSCCS--SSEECBEEE-----------HHHHHHHTTTEECEEEE-EET----------------TTEEEEEEECCTTC
T ss_pred EEccCCc--cceEEEEcC-----------HHHHHHHHHhcCEEEEe-ccc----------------CCCceEEEEccCcC
Confidence 8776544 566666543 36888887755999821 111 23579999998888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++|+++++++|+++++.
T Consensus 340 ~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 340 EEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp CHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999987753
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=256.04 Aligned_cols=359 Identities=16% Similarity=0.202 Sum_probs=247.3
Q ss_pred CCCCHHHHHhhhccC---CC--CeEEeccCCCC-CCcHHHHHHH--HHHHHHHhcCCch-hhhhhhhHHHHHHHHHHHhH
Q 012991 22 RCISEAEIRDEFSHH---QH--GVARINNGSFG-SCPKSVLADQ--QKWQLKFLQQPDD-FYFNSLRKGILESRAAVKDL 92 (452)
Q Consensus 22 ~~~~~~~ir~~~~~~---~~--~~~~l~~~~~~-~~p~~v~e~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~ 92 (452)
..++..+++++|+.+ .. -+.|++.+.++ ..|+.+.+.+ ..+... ..+.. ....+..+..++++++++++
T Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~la~~ 120 (438)
T 1wyu_A 43 EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTA--YTPYQPEVSQGVLQATFEYQTMIAEL 120 (438)
T ss_dssp CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHC--CSCCSGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhc--CCCCcchhhhhHHHHHHHHHHHHHHH
Confidence 457888999988752 12 12355555443 4677554443 222221 11211 11344567789999999999
Q ss_pred hCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 93 INADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 93 ~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
+|++ ++++++++|+|.+++.+..++. +++||+|+++.++|+++..++..+++..|++++.++.+ ++.
T Consensus 121 ~g~~-~~~i~~~~g~taa~ea~~~a~~-------~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~-----~~~ 187 (438)
T 1wyu_A 121 AGLE-IANASMYDGATALAEGVLLALR-------ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE-----GGR 187 (438)
T ss_dssp HTSS-EECSCBSSHHHHHHHHHHHHHH-------HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB-----TTB
T ss_pred hCCC-ccceEEeCcHHHHHHHHHHHHh-------cCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc-----CCc
Confidence 9996 6788999999966555555441 36899999999999999999988788899999999531 121
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecc-cccCCccccccccCccEEEEc
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAA-HAMGSIKIDVKEIGADFYVSN 250 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a-~~~g~~~~~~~~~~~d~~~~s 250 (452)
+ +++ + +++|++|+++++ |++|.+.|+++|+++|+++|+ ++|+|.. ++.|....+ ..+++|++++|
T Consensus 188 ~d~~~----i------~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~-~vivd~d~~a~g~~~~~-~~~g~D~~~~s 254 (438)
T 1wyu_A 188 TPLPE----V------GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGA-LFVAVADPLSLGVLKPP-GAYGADIAVGD 254 (438)
T ss_dssp CCCCC----C------CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTC-EEEEECCTTGGGTBCCH-HHHTCSEEEEE
T ss_pred cCHHH----h------CCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCC-EEEEEechhhccCcCCC-ccCCCCEEEEC
Confidence 1 222 4 568999999998 999999999999999999999 7997754 666654433 44679999999
Q ss_pred Ccc-----cCcCCCCcEEEEEecCccccCCCCCceec---cCCCC--ccc--------ccccccccCc---cccccHHHH
Q 012991 251 LHK-----WFFCPPSVAFLYCRKSILSSDMHHPVVSH---EFGNG--LPI--------ESAWIGTRDY---SAQLVIPSA 309 (452)
Q Consensus 251 ~~K-----~l~g~~G~G~l~~~~~~~~~~l~~~~~~~---~~~~~--~~~--------~~~~~~~~~~---~~~~~~~~a 309 (452)
.+| |++|| |+|++++++++++. + .+.... +..+. ... .....+++++ ..+.++.++
T Consensus 255 ~kk~~~~~~~~Gp-~~G~l~~~~~~~~~-l-~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa 331 (438)
T 1wyu_A 255 GQSLGLPMGFGGP-HFGFLATKKAFVRQ-L-PGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGA 331 (438)
T ss_dssp CTTTTCCCGGGCS-CCEEEEECGGGGGG-C-CSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHH
T ss_pred CcccCCCccCCCC-CeeEEEEcHHHHHh-C-CCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHH
Confidence 777 66777 78999999887775 2 222100 00000 000 0122455655 233444444
Q ss_pred --HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceE
Q 012991 310 --VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVE 387 (452)
Q Consensus 310 --l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~ 387 (452)
+..+... |++++.++.+++++++.+.|.+++|+++..+.. ...++.+..+ .+..++.+.|.++ ||.
T Consensus 332 ~~l~~~~~~--g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~L~~~-gi~ 399 (438)
T 1wyu_A 332 MYLAALGPE--GLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-FFNEFALALP--------KDPEAVRRALAER-GFH 399 (438)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-BCSEEEEECS--------SCHHHHHHHHHHT-TCC
T ss_pred HHHHHhCHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCC-eEEEEEEeCC--------CCHHHHHHHHHHC-Cce
Confidence 5555543 788999999999999999999888888766532 2333445442 3567899999775 998
Q ss_pred e--eecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 388 V--PIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 388 v--~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+ +.+..+ .++++|+|++.++|.+|+++++++|++++
T Consensus 400 v~~~~~~~~-----------------~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 400 GATPVPREY-----------------GENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp CCEECCTTS-----------------CSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ecccccccc-----------------CCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 8 333222 24799999999999999999999998864
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=255.54 Aligned_cols=352 Identities=13% Similarity=0.076 Sum_probs=246.4
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCCCcEEEecChhH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDVGEISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~i~~t~g~t~ 109 (452)
++.+++|+.+.+. +.|+.+.+++.+.+... . ...+.......++++.++++++ ++ +++|++|+|+|+
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~-~~~y~~~~g~~~lr~~la~~~~~~~g~~~~-~~~i~~t~g~t~ 116 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLREG----V-ASIYPNLDGLPELKQEASRFAKLFVNIDIP-ARACVPTVGSMQ 116 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHHT----G-GGSCCCTTCCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHH
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhCC----c-CcCCCCCCChHHHHHHHHHHHHHhhCCCCC-cccEEEeCCHHH
Confidence 5789999888766 45788999998877641 1 0122223334677777777776 43 689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCC--EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc
Q 012991 110 AAAIVLQQIGRGFTEGRFHRND--TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~--~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
|+.+++.++. ..++|| +|+++.++|++....+. ..|.+++.+++. ++...+ +++|+++++
T Consensus 117 al~~~~~~l~------~~~~gd~~~Vl~~~p~~~~~~~~~~----~~g~~~~~v~~~---~~~~~~d~~~l~~~l~---- 179 (437)
T 3g0t_A 117 GCFVSFLVAN------RTHKNREYGTLFIDPGFNLNKLQCR----ILGQKFESFDLF---EYRGEKLREKLESYLQ---- 179 (437)
T ss_dssp HHHHHHHHHT------TSCTTCSCCEEEEESCCHHHHHHHH----HHTCCCEEEEGG---GGCTTHHHHHHHHHHT----
T ss_pred HHHHHHHHHh------cCCCCCccEEEEeCCCcHhHHHHHH----HcCCEEEEEeec---CCCCccCHHHHHHHHh----
Confidence 9999999872 127899 99999999998766654 459999999652 112224 899999995
Q ss_pred CCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cc--------cccc-cCccEEEEc
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KI--------DVKE-IGADFYVSN 250 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~--------~~~~-~~~d~~~~s 250 (452)
++++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ++ ++.. .+.++++.|
T Consensus 180 -~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 257 (437)
T 3g0t_A 180 -TGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDV-IVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALS 257 (437)
T ss_dssp -TTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEE
T ss_pred -cCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCc-EEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEc
Confidence 467899999999999999997 6668999999999 8999999975322 21 2222 456789999
Q ss_pred CcccCcCCCC--cEEEEEecCccc-cCCCCCceeccCCCC------c-ccccccccccCccccccHHHHHHHHHHhhcCH
Q 012991 251 LHKWFFCPPS--VAFLYCRKSILS-SDMHHPVVSHEFGNG------L-PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGI 320 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~~~~~~~-~~l~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~ 320 (452)
+||+ +|++| +|++++++++++ . + .... ..++.. . ........+.+...+.++..+++....++...
T Consensus 258 ~sK~-~~~~G~r~G~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 333 (437)
T 3g0t_A 258 SSKA-FSYAGQRIGVLMISGKLYERE-Y-PDLE-ESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNF 333 (437)
T ss_dssp STTT-TSCGGGCCEEEEECHHHHHCB-C-GGGH-HHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCH
T ss_pred CccC-CCCccceeEEEEECHHHhhhh-h-hccc-ccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHH
Confidence 9997 55455 899999877765 3 0 0000 000000 0 00111123445555555555555544211127
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcC------CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 321 DGIMQRNHEQALKMARMLANAWGTSLG------SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 321 ~~~~~~~~~~~~~l~~~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
+.++++++++++++.+.|.++ ++.+. .++ ..+.++++.++ +.+..++.+.|.++ ||.+..+..+
T Consensus 334 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~l~~~L~~~-gi~v~~~~~~ 403 (437)
T 3g0t_A 334 RDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPL-ADGFYFTVGYK-------GMDSSKLIEKFVRY-GMCAITLKTT 403 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEEC-CSSSEEEEEET-------TCCHHHHHHHHHHT-TEECEESTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCC-ceeEEEEEecC-------CCCHHHHHHHHHHc-CeEEeecccc
Confidence 889999999999999999988 77766 231 12678888875 45678899999875 9999866554
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.. ..++++|+|++. .+.+|+++++++|++++++
T Consensus 404 ~~--------------~~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 404 GS--------------KRNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TC--------------CCTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred CC--------------CCCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 21 223789999984 4899999999999998865
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=251.90 Aligned_cols=328 Identities=13% Similarity=0.090 Sum_probs=238.0
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
...+++|+.+... +.|+.+.+++.+.+..... ..+. .....++++++++++|+++++++++|+|+|+|+.+++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~~y~-~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 102 (367)
T 3euc_A 29 SHGLVKLDAMENPYRLPPALRSELAARLGEVAL-----NRYP-VPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLA 102 (367)
T ss_dssp CTTCEECCSSCCCCCCCHHHHHHHHHHHHHHHT-----TCSC-CCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHH
T ss_pred CCCeeEccCCCCCCCCCHHHHHHHHHHhhhhhh-----hcCC-CCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHH
Confidence 4578999887755 5678899999888764211 1111 1246889999999999943689999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.++ +++||+|+++.++|++....+ ...|.+++.++++ .++.+ +++|++++++ .++++|
T Consensus 103 ~~~--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~-----~~~~~v 161 (367)
T 3euc_A 103 LAA--------ARPGAKVMAPVPGFVMYAMSA----QFAGLEFVGVPLR----ADFTLDRGAMLAAMAE-----HQPAIV 161 (367)
T ss_dssp HHT--------CCTTCEEEEEESCSCCSCHHH----HTTTCEEEEEECC----TTSCCCHHHHHHHHHH-----HCCSEE
T ss_pred HHH--------cCCCCEEEEcCCCHHHHHHHH----HHcCCeEEEecCC----CCCCCCHHHHHHHhhc-----cCCCEE
Confidence 976 588999999999999876554 5569999999653 23333 8999999952 278999
Q ss_pred EEeccCCCCccccc---HHHHHHHHHHc--CCCEEEEecccccCCc---cccccccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 195 IIDHITSMPCVVIP---VRKLVKICRDE--GVDQVFVDAAHAMGSI---KIDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 195 ~~~~~~n~tG~~~~---l~~i~~l~~~~--~~~~~ivD~a~~~g~~---~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
++++++||||.++| +++|+++|++| |+ ++|+|++|+.... .......+.++++.|++|+..++.++|++++
T Consensus 162 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~ 240 (367)
T 3euc_A 162 YLAYPNNPTGNLFDAADMEAIVRAAQGSVCRS-LVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAG 240 (367)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHTBTTSCBC-EEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEE
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCc-EEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeee
Confidence 99999999999976 56777789999 99 8999999874321 1122333556889999996222333789988
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
++++++. + .... ...+.+...+.++..+++. .. .++..+++.+++++++.+.|.+++++.+
T Consensus 241 ~~~~~~~-~-~~~~-------------~~~~~~~~~~~a~~~~l~~-~~---~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 301 (367)
T 3euc_A 241 DPQWLEQ-L-DKVR-------------PPYNVNVLTEATALFALEH-VA---VLDEQAAQLRAERSRVAEGMAAHGGVTV 301 (367)
T ss_dssp CHHHHHH-H-GGGC-------------CSSCCCHHHHHHHHHHHTT-HH---HHHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred CHHHHHH-H-HHhC-------------CCCCCCHHHHHHHHHHhcC-HH---HHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 8777664 1 1110 0123444444444445544 22 4678888899999999999998878775
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.. +. ++++++.++ +..++.+.|.+ +||.+..+..+.. ...+++|++++ +.
T Consensus 302 ~~-~~--~~~~~~~~~---------~~~~l~~~l~~-~gi~v~~~~~~~~--------------~~~~~iRis~~---~~ 351 (367)
T 3euc_A 302 FP-SA--ANFLLARVP---------DAAQTFDRLLA-RKVLIKNVSKMHP--------------LLANCLRVTVS---TP 351 (367)
T ss_dssp CC-CS--SSEEEEECS---------CHHHHHHHHHT-TTEECEECGGGCG--------------GGTTEEEEECC---CH
T ss_pred CC-CC--CeEEEEECC---------CHHHHHHHHHH-CCeEEEECCccCC--------------CCCCEEEEecC---CH
Confidence 43 32 567787774 56788888866 5999976654321 34679999987 89
Q ss_pred HHHHHHHHHHHHHHh
Q 012991 427 EDYEKFRDAVILLVE 441 (452)
Q Consensus 427 ~di~~l~~~l~~~~~ 441 (452)
+|+++++++|+++++
T Consensus 352 ~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 352 EENAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998864
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=250.05 Aligned_cols=345 Identities=12% Similarity=0.140 Sum_probs=237.3
Q ss_pred HHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CCCC
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--ADDV 98 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~ 98 (452)
+....+++...++.+++|+.+... +.|+.+.+++.+.+... . ..+....+..++++.+++++ | ++ +
T Consensus 19 ~~~~~~~~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~----~--~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-~ 91 (391)
T 3h14_A 19 VMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETD----A--LGYTVALGLPALRQRIARLYGEWYGVDLD-P 91 (391)
T ss_dssp HHHHHHHHHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHCCCCC-G
T ss_pred HHHHHHHHHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcC----C--CCCCCCCChHHHHHHHHHHHHHHhCCCCC-H
Confidence 333344444467889999988766 45677999988876431 1 12222233456666666665 4 43 6
Q ss_pred CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHH
Q 012991 99 GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l 177 (452)
++|++|+|+|+|+.+++.++ +++||+|+++.++|++....+ +..|.+++.+++.. +....+ ++++
T Consensus 92 ~~v~~t~g~~~al~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l 157 (391)
T 3h14_A 92 GRVVITPGSSGGFLLAFTAL--------FDSGDRVGIGAPGYPSYRQIL----RALGLVPVDLPTAP--ENRLQPVPADF 157 (391)
T ss_dssp GGEEEESSHHHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEECCG--GGTTSCCHHHH
T ss_pred HHEEEecChHHHHHHHHHHh--------cCCCCEEEEcCCCCccHHHHH----HHcCCEEEEeecCc--ccCCCCCHHHH
Confidence 89999999999999999987 588999999999999876554 45699999996521 111112 5555
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---cccccc-cCccEEEEc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE-IGADFYVSN 250 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~-~~~d~~~~s 250 (452)
++. ++++|++++++||||.++| +++|+++|++||+ ++|+|++++.... +..... .+.++++.|
T Consensus 158 ~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s 227 (391)
T 3h14_A 158 AGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGA-SFISDEIYHGIEYEAKAVTALELTDECYVINS 227 (391)
T ss_dssp TTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBSSSCCCCGGGTCSSSEEEEE
T ss_pred Hhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCC-EEEEECcchhcccCCCCcChhhcCCCEEEEEe
Confidence 432 6889999999999999998 7788999999999 8999999875332 222222 245688889
Q ss_pred CcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 251 LHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
++|+ +|++| +|++++++++++. + ... ...+..+++...+.++.++++ .. ..++..+++++
T Consensus 228 ~sK~-~g~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~-~~---~~~~~~~~~~~ 289 (391)
T 3h14_A 228 FSKY-FSMTGWRVGWMVVPEDQVRV-V-ERI-----------AQNMFICAPHASQVAALAALD-CD---AELQANLDVYK 289 (391)
T ss_dssp SSST-TCCTTSCCEEEECCGGGHHH-H-HHH-----------HHHTTCCCCHHHHHHHHHHTT-CH---HHHHHHHHHHH
T ss_pred chhc-cCCccceeEEEEeCHHHHHH-H-HHH-----------HhhhccCCCHHHHHHHHHHhC-Ch---HHHHHHHHHHH
Confidence 9997 45444 7999888877664 1 111 111123444444444444554 11 25678888899
Q ss_pred HHHHHHHHHHHHHcCCCc-CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
++++++.+.|.+. ++.. ..+.. +.++++.++. .+.+..++.+.|.+++||.+.++..+..
T Consensus 290 ~~~~~l~~~l~~~-~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~----------- 350 (391)
T 3h14_A 290 ANRKLMLERLPKA-GFTRIAPPDG--AFYVYADVSD-----LTDDSRAFAAEILEKAGVAVTPGLDFDP----------- 350 (391)
T ss_dssp HHHHHHHHHHHHH-TCCCBCCCCB--TTEEEEECTT-----TCSCHHHHHHHHHHHHCEECEEGGGTCT-----------
T ss_pred HHHHHHHHHHHHc-CCCcccCCCe--eEEEEEecCc-----cCCCHHHHHHHHHHHCCEEEcCchhhCC-----------
Confidence 9999999999988 5443 33433 5677777752 1346778888877656999987766532
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...++++|++++. +++++++++++|++++++
T Consensus 351 --~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 351 --ERGAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp --TTGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 1346799999987 789999999999999875
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=256.89 Aligned_cols=388 Identities=14% Similarity=0.077 Sum_probs=248.8
Q ss_pred CCCCCHHHHHhhh----cc---CCCCeEEeccCCCCCCcHHHHHHHHHHHHHH-hcCCchh-hhhhhhHHHHHHHHHHHh
Q 012991 21 TRCISEAEIRDEF----SH---HQHGVARINNGSFGSCPKSVLADQQKWQLKF-LQQPDDF-YFNSLRKGILESRAAVKD 91 (452)
Q Consensus 21 ~~~~~~~~ir~~~----~~---~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~la~ 91 (452)
...++.+++.+++ +. ..++ .|++....+..|..+.. +++... +.+...+ .+....++.+++++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~---~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~ 143 (504)
T 2okj_A 68 DHPESLEQILVDCRDTLKYGVRTGHP-RFFNQLSTGLDIIGLAG---EWLTSTANTNMFTYEIAPVFVLMEQITLKKMRE 143 (504)
T ss_dssp SSCCCHHHHHHHHHHHHHTSCCTTCT-TEESSSSCCCCHHHHHH---HHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhccCCCCCC-CEEEEccCCCCHHHHHH---HHHHHhhccCCCchhhChHHHHHHHHHHHHHHH
Confidence 3456665555443 21 1233 47887777777765543 222222 2222111 123345567778899999
Q ss_pred HhCCCC-CCcEEEecChhHHHHHHHHHhhcccccCCCCCC-----C-EEEEeCCcchhHHHHHHHHHHhcCc-EEEEEeC
Q 012991 92 LINADD-VGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN-----D-TVLMLHCAFQAVKKSIQAYVTRAGG-SVVEVQL 163 (452)
Q Consensus 92 ~~~~~~-~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g-----~-~Vl~~~~~~~s~~~~~~~~a~~~g~-~v~~~~~ 163 (452)
++|.+. .++++||+|||+|+.+++.++.........++| + +|+++.++|+++..++..+ . .|. +++.++
T Consensus 144 ~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~-g-~g~~~v~~v~- 220 (504)
T 2okj_A 144 IVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL-G-FGTDNVILIK- 220 (504)
T ss_dssp HHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT-T-SCGGGEEEEC-
T ss_pred HhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc-C-CCcccEEEEe-
Confidence 999963 578999999999999999887421100000134 5 7899999999988877553 1 133 788884
Q ss_pred CCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-----c
Q 012991 164 PFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK-----I 237 (452)
Q Consensus 164 ~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~ 237 (452)
.++++.+ +++|+++|++....+.+|++|++++++|++|.+.|+++|+++|++||+ ++|+|++++.+... .
T Consensus 221 ---~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~-~lhvD~a~~~~~~~~~~~~~ 296 (504)
T 2okj_A 221 ---CNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL-WLHVDAAWGGGLLMSRKHRH 296 (504)
T ss_dssp ---BCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTC-EEEEEETTGGGGGGCTTTGG
T ss_pred ---cCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-EEEEehhhhhHHHhCHhhHh
Confidence 4444555 899999986432223479999999999999999999999999999999 69999999887653 2
Q ss_pred cccc-cCccEEEEcCcccCcCCCCcEEEEEecC-cccc--CCCCCceeccCCCCc----cccc---ccccccCccccccH
Q 012991 238 DVKE-IGADFYVSNLHKWFFCPPSVAFLYCRKS-ILSS--DMHHPVVSHEFGNGL----PIES---AWIGTRDYSAQLVI 306 (452)
Q Consensus 238 ~~~~-~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~~~--~l~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~ 306 (452)
.+.. .++|++++++|||+++|.|+|+++++++ ++.. ....++.. +... .... ....+... ...++
T Consensus 297 ~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~rr~-~~l~~ 372 (504)
T 2okj_A 297 KLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLF---QPDKQYDVSYDTGDKAIQCGRHV-DIFKF 372 (504)
T ss_dssp GGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSC---CSCCSSCGGGCCGGGSSCSSCBC-CHHHH
T ss_pred hcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCcccc---CCcccccCcCCcccCCCCCCCCc-cHHHH
Confidence 3332 2689999999999888999999999874 4331 01223321 1110 0000 00011111 12344
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEc-CCcc-ccCC--h------hhHHHH
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL-PSRL-RVMG--E------DDALRL 376 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~------~~~~~l 376 (452)
.++++.+... |++.+.++..++++++.+.|.+.+++++..+.....++++|.. +... ...+ . ....++
T Consensus 373 ~a~l~~lg~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (504)
T 2okj_A 373 WLMWKAKGTV--GFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKI 450 (504)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHH
T ss_pred HHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHH
Confidence 4555555543 7888999999999999999998888887762111245566654 3110 0000 0 013578
Q ss_pred HHHHhhhcce-EeeecccCCCCCCCCCCCCCCCCCCccceEEeccc-ccCCHHHHHHHHHHHHHHHhc
Q 012991 377 RGHLRVRFGV-EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ-VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 377 ~~~L~~~~gI-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.|.++ |+ .+..... ....+++|+++. .++|++||++++++|+++.++
T Consensus 451 ~~~L~~~-G~~~~~~~~~----------------~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 451 KALMMES-GTTMVGYQPQ----------------GDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp HHHHHHH-TSCEEEEEEE----------------TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC-CcEEEEeeEE----------------CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888776 75 4432211 112368999996 889999999999999998754
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=256.97 Aligned_cols=343 Identities=13% Similarity=0.119 Sum_probs=237.4
Q ss_pred hhccCCCCeEEeccCCC---C-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh------CCCCCCcE
Q 012991 32 EFSHHQHGVARINNGSF---G-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI------NADDVGEI 101 (452)
Q Consensus 32 ~~~~~~~~~~~l~~~~~---~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i 101 (452)
.+...++.+++|+.+.+ . +.|+.+.+++.+.+... .. .|.......++++.+++++ +++ ++++
T Consensus 32 ~~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~--~y~~~~g~~~l~~~la~~l~~~~g~~~~-~~~v 104 (406)
T 1xi9_A 32 ELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEG----HN--YYGDSEGLPELRKAIVEREKRKNGVDIT-PDDV 104 (406)
T ss_dssp HHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTT----CC--SCCCTTCCHHHHHHHHHHHHHHHCCCCC-GGGE
T ss_pred HHHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcC----CC--CCCCCCCcHHHHHHHHHHHHHhcCCCCC-HHHE
Confidence 33335678999998877 3 45677999988876431 11 1222223456666666666 343 6899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++|+|+|+|+.+++.++ +++||+|++++++|++....+ ...|.+++.++.+. ++...+ +++|++.
T Consensus 105 ~~t~g~~~al~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~ 170 (406)
T 1xi9_A 105 RVTAAVTEALQLIFGAL--------LDPGDEILVPGPSYPPYTGLV----KFYGGKPVEYRTIE--EEDWQPDIDDIRKK 170 (406)
T ss_dssp EEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEEEEG--GGTSEECHHHHHHH
T ss_pred EEcCChHHHHHHHHHHh--------CCCCCEEEEcCCCCccHHHHH----HHcCCEEEEeecCC--CcCCcCCHHHHHHh
Confidence 99999999999999987 478999999999999876554 45699999986521 111123 8999999
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---cccccc--cCc-cEEEEcC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE--IGA-DFYVSNL 251 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~--~~~-d~~~~s~ 251 (452)
+ .+++++|++++++||||.++| +++|+++|++||+ ++|+|++++.+.. ...+.. .+. |+++.|+
T Consensus 171 l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 243 (406)
T 1xi9_A 171 I------TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEI-PVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGL 243 (406)
T ss_dssp C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-CEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEES
T ss_pred h------CcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCC-EEEEEcCccccccCCCCCCHHHcCCCceEEEEecc
Confidence 8 467999999999999999987 8899999999999 6999999876442 112222 245 7899999
Q ss_pred cccCcCCCC--cEEEE--Eec----CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 252 HKWFFCPPS--VAFLY--CRK----SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~--~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
||+ +|++| +|+++ .++ ++++. + ... .... .+.+...+.++.++++... ..++.+
T Consensus 244 sK~-~~~~G~r~G~~~~~~~~~~~~~l~~~-l-~~~-----------~~~~-~~~~~~~~~a~~~~l~~~~---~~~~~~ 305 (406)
T 1xi9_A 244 SKV-YFATGWRLGYMYFVDPENKLSEVREA-I-DRL-----------ARIR-LCPNTPAQFAAIAGLTGPM---DYLKEY 305 (406)
T ss_dssp TTT-TCCGGGCCEEEEEECTTCTTHHHHHH-H-HHH-----------HHHT-CCSCSHHHHHHHHHHHSCC---HHHHHH
T ss_pred ccc-cCCCccEEEEEEEecCchhHHHHHHH-H-HHH-----------HHhh-cCCCHHHHHHHHHHHhCCc---HHHHHH
Confidence 997 55566 79988 666 55543 1 111 0000 2333334444444443211 136778
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
+++++++++++.+.|.+++++.+..+.. +.++++.++.. .+.+..++.+.|.+++||.+..+..+..
T Consensus 306 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~l~~~l~~~~gi~v~~g~~f~~------- 372 (406)
T 1xi9_A 306 MKKLKERRDYIYKRLNEIPGISTTKPQG--AFYIFPKIEVG----PWKNDKEFVLDVLHNAHVLFVHGSGFGE------- 372 (406)
T ss_dssp HHHHHHHHHHHHHHHHTSTTEECCCCCB--SSEECCEECSC----SCSSHHHHHHHHHHHHCEECEEGGGGCG-------
T ss_pred HHHHHHHHHHHHHHHHhCCCCeeecCCe--eEEEEEecCcc----CCCCHHHHHHHHHHhCCEEEeCchhcCC-------
Confidence 8889999999999998877777655443 45555566510 0246678888886345999977655421
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++ ++++++++++++|++++++
T Consensus 373 -------~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 373 -------YGAGHFRAVFL--PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp -------GGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 23579999998 6999999999999998864
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=254.06 Aligned_cols=330 Identities=13% Similarity=0.078 Sum_probs=230.8
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCC--------CcEEEecChhHHHHHHHHHhhcccccC-----------CCCCCCEEEEe
Q 012991 76 NSLRKGILESRAAVKDLINADDV--------GEISLVDNATTAAAIVLQQIGRGFTEG-----------RFHRNDTVLML 136 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~--------~~i~~t~g~t~a~~~~~~~l~~~~~~~-----------~~~~g~~Vl~~ 136 (452)
....++.+++.+++++++|.++. ...+||+|||+|+..++.+....+... ...+++.|+++
T Consensus 109 p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s 188 (475)
T 3k40_A 109 PACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS 188 (475)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEEC
Confidence 45567788889999999999721 268999999999988888764322100 01134689999
Q ss_pred CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHH
Q 012991 137 HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKI 215 (452)
Q Consensus 137 ~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l 215 (452)
..+|.|+.+++.. .|.+++.+ +.++++ + +++|+++|++....+..|.+|++++++|++|.+.|+++|+++
T Consensus 189 ~~~H~s~~~~~~~----~g~~~~~v----~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~l 259 (475)
T 3k40_A 189 DQAHSSVERAGLL----GGVKLRSV----QSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPV 259 (475)
T ss_dssp TTSCHHHHHHHHH----HTCEEEEE----CCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred CCchHHHHHHHHH----cCCceEEE----ECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHH
Confidence 9999998877654 59999999 445566 7 999999997543333458899999999999999999999999
Q ss_pred HHHcCCCEEEEecccccCCcccc-c----cc-cCccEEEEcCcccCcCCCCcEEEEEecCcc-cc--CCCCCceeccCCC
Q 012991 216 CRDEGVDQVFVDAAHAMGSIKID-V----KE-IGADFYVSNLHKWFFCPPSVAFLYCRKSIL-SS--DMHHPVVSHEFGN 286 (452)
Q Consensus 216 ~~~~~~~~~ivD~a~~~g~~~~~-~----~~-~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~-~~--~l~~~~~~~~~~~ 286 (452)
|++||+ ++|+|+|++.+....+ . .. ..+|++++++|||+++|.|+|++++++... .. ....+++......
T Consensus 260 a~~~~~-~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~ 338 (475)
T 3k40_A 260 GNKHNL-WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQG 338 (475)
T ss_dssp HHHTTC-EEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------------
T ss_pred HHHhCC-eEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCC
Confidence 999999 6999999987654221 1 11 146999999999999999999999986533 22 0112222111000
Q ss_pred Ccc--cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCc
Q 012991 287 GLP--IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSR 364 (452)
Q Consensus 287 ~~~--~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (452)
..+ ......++.. ...+.++++++.+... |++++.++..++++++.+.|.+++++++..++. .++++|.++.
T Consensus 339 ~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~--~~iv~f~~~~- 412 (475)
T 3k40_A 339 SAPDYRHWQIPLGRR-FRALKLWFVLRLYGVE--NLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN--MGLVCFRLKG- 412 (475)
T ss_dssp ----------CCCGG-GTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCB--TTEEEEEESS-
T ss_pred CCCCcccccccCCCc-ccHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc--eEEEEEEeCC-
Confidence 000 0000011111 2345566777776653 899999999999999999999998998877654 6788898752
Q ss_pred cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHHHHhc
Q 012991 365 LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 365 ~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~ 442 (452)
......++.+.|.++.++++..... ....++|+++..+ +|++||++++++|+++.++
T Consensus 413 ----~~~~~~~l~~~L~~~g~~~~~~~~~-----------------~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 413 ----SNERNEALLKRINGRGHIHLVPAKI-----------------KDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp ----CHHHHHHHHHHHHHHTSCBCEEEEE-----------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHhCCcEEEEeeEE-----------------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2334678999998763334432221 2246999998644 6899999999999998764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=248.72 Aligned_cols=349 Identities=15% Similarity=0.134 Sum_probs=239.5
Q ss_pred CCCeEEeccCCCC---CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChh
Q 012991 37 QHGVARINNGSFG---SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNAT 108 (452)
Q Consensus 37 ~~~~~~l~~~~~~---~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t 108 (452)
++.+++|+.+.+. ..++.+.+++.+.+... +.... |.......++++.+++++ |.+ ++++|++|+|+|
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~---~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t 108 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKE---PKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGT 108 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHC---GGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhc---ccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHH
Confidence 3478899776543 25677888888877542 11112 333344677888888887 832 268999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+ .++ + +++|++++++....
T Consensus 109 ~a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~----~~~-~d~~~l~~~l~~~~~~ 171 (407)
T 2zc0_A 109 GALDLLGRVL--------IDPGDVVITENPSYINTLLAF----EQLGAKIEGVPVD----NDG-MRVDLLEEKIKELKAK 171 (407)
T ss_dssp HHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTTCEEEEEEEE----TTE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--------cCCCCEEEEeCCChHHHHHHH----HHcCCEEEEcccC----CCC-CCHHHHHHHHHhhhcc
Confidence 9999999987 478999999999999875554 5569999998652 223 4 88899888511000
Q ss_pred CCceEEE-EEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCcc----cccccc---CccEEEEcCcccCc
Q 012991 188 GKMIRLA-IIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSIK----IDVKEI---GADFYVSNLHKWFF 256 (452)
Q Consensus 188 ~~~~~lv-~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~~---~~d~~~~s~~K~l~ 256 (452)
..++++| ++++++||||.++|.+ +|+++|++||+ ++|+|++++.+... .++..+ +.++++.|++|+++
T Consensus 172 ~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 250 (407)
T 2zc0_A 172 GQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDL-LIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG 250 (407)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC
T ss_pred cCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC
Confidence 2478887 5789999999999986 89999999999 79999999865431 122222 34578889999854
Q ss_pred CCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHH
Q 012991 257 CPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFE-GGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 257 g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~g~~~~~~~~~~~~~~l~ 335 (452)
++..+|++++++++++. + .... . . +....+...+.++..+++... .+ ..++.++++++++++++.
T Consensus 251 ~G~r~G~~~~~~~~~~~-~-~~~~-~--~--------~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~ 316 (407)
T 2zc0_A 251 TGFRIGWIIAEGEILKK-V-LMQK-Q--P--------IDFCAPAISQYIALEYLKRGY-FEKYHLEGALLGYKEKRDIML 316 (407)
T ss_dssp TTSCCEEEECCHHHHHH-H-HHHH-T--T--------TTSSSCHHHHHHHHHHHHTTH-HHHHTTTTHHHHHHHHHHHHH
T ss_pred CCcceEEEecCHHHHHH-H-HHHH-H--h--------hcCCCCHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHH
Confidence 21127999998776654 1 1110 0 0 001122333333333443220 01 256777888889999999
Q ss_pred HHHHHH-cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 336 RMLANA-WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 336 ~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
+.|.+. +++.+..+.. +.++++.++ .+.+..++.+.|.+++||.+..+..+... ...++
T Consensus 317 ~~L~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~l~~~l~~~~gi~v~~g~~~~~~------------~~~~~ 376 (407)
T 2zc0_A 317 KALENHLPNAEFTKPIA--GMFVMFFLP------EGADGISFANELMEREGVVVVPGKPFYTD------------ESGKN 376 (407)
T ss_dssp HHHHHHCTTSCBCCCSB--SSEEEEECS------TTCCHHHHHHHHHHHTCEECBCSGGGCSS------------SCCTT
T ss_pred HHHHHhCCCCEEecCCC--cEEEEEEcC------CCCCHHHHHHHHHHhCCeEEECchhccCC------------CCCCC
Confidence 999874 5676655543 678888886 34567789999977669999766544221 12357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++|++++.. +++|+++++++|++++++
T Consensus 377 ~iRis~~~~-~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 377 AIRLNFSRP-SKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp EEEEECSSS-CTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence 999999876 899999999999998864
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=253.93 Aligned_cols=350 Identities=14% Similarity=0.092 Sum_probs=242.8
Q ss_pred HHhhhcc-CCCCeEEeccCCCCC---CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe
Q 012991 29 IRDEFSH-HQHGVARINNGSFGS---CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLV 104 (452)
Q Consensus 29 ir~~~~~-~~~~~~~l~~~~~~~---~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t 104 (452)
+++.+.. .++.+++|+.+.+.+ .++.+.+++.+.+.... .....|.......++++.+++++|++ +++|++|
T Consensus 22 ~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~---~~~~~y~~~~~~~~l~~~la~~~g~~-~~~v~~~ 97 (397)
T 2zyj_A 22 IRELLKLTQRPGILSFAGGLPAPELFPKEEAAEAAARILREKG---EVALQYSPTEGYAPLRAFVAEWIGVR-PEEVLIT 97 (397)
T ss_dssp HHHHHHHHTSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH---HHHTSCCCTTCCHHHHHHHHHHHTSC-GGGEEEE
T ss_pred HHHHHhhccCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcc---hhhhCCCCCCCCHHHHHHHHHHhCCC-hhhEEEe
Confidence 4444432 346789998776542 56778898888775421 11122333345788999999999975 6899999
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
+|+++|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+ .++ + +++|++++++
T Consensus 98 ~g~~~al~~~~~~~--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~----~~~-~d~~~l~~~l~~ 160 (397)
T 2zyj_A 98 TGSQQALDLVGKVF--------LDEGSPVLLEAPSYMGAIQAF----RLQGPRFLTVPAG----EEG-PDLDALEEVLKR 160 (397)
T ss_dssp SHHHHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEE----TTE-ECHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh--------CCCCCEEEEeCCCcHHHHHHH----HHcCCEEEecCcC----CCC-CCHHHHHHHHhh
Confidence 99999999999987 478999999999999876554 4569999988652 223 4 8999999853
Q ss_pred cccCCCceEEE-EEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCc----cccccccC------ccEEEE
Q 012991 184 GKKDGKMIRLA-IIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEIG------ADFYVS 249 (452)
Q Consensus 184 ~~~~~~~~~lv-~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~~------~d~~~~ 249 (452)
.++++| ++++++||||.++|.+ +|+++|++||+ ++|+|++++.+.. +.++..++ .++++.
T Consensus 161 -----~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~ 234 (397)
T 2zyj_A 161 -----ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGL-VVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLG 234 (397)
T ss_dssp -----CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTC-CEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEE
T ss_pred -----cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC-EEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEe
Confidence 367887 5799999999999865 88999999999 6999999986432 22333332 338889
Q ss_pred cCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 250 NLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 250 s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
|+||+++++.++|++++++++++. + .... ..+..+.+...+.++.++++... + ...+.+++++++
T Consensus 235 s~sK~~~~G~r~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~-~-~~~~~~~~~~~~ 299 (397)
T 2zyj_A 235 SFSKVLSPGLRVAFAVAHPEALQK-L-VQAK-----------QGADLHTPMLNQMLVHELLKEGF-S-ERLERVRRVYRE 299 (397)
T ss_dssp ESTTTTCGGGCCEEEECCHHHHHH-H-HHHH-----------HHHHSSCCHHHHHHHHHHHTTTH-H-HHHHHHHHHHHH
T ss_pred cccccccccceeEEEecCHHHHHH-H-HHHH-----------HhhcCCCCHHHHHHHHHHHHhCC-H-HHHHHHHHHHHH
Confidence 999985522337999998777664 1 1110 00001123333333333332211 0 136677888888
Q ss_pred HHHHHHHHHHHH-c-CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANA-W-GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 330 ~~~~l~~~L~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
+++++.+.|.+. + ++.+..+.. +.++++.++ .+.+..++.+.|.++ ||.+..+..+...
T Consensus 300 ~~~~l~~~L~~~~~~g~~~~~~~~--g~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~g~~f~~~---------- 360 (397)
T 2zyj_A 300 KAQAMLHALDREVPKEVRYTRPKG--GMFVWMELP------KGLSAEGLFRRALEE-NVAFVPGGPFFAN---------- 360 (397)
T ss_dssp HHHHHHHHHHHHSCTTSEECCCSB--SSEEEEECS------TTCCHHHHHHHHHHT-TEEEEESGGGCTT----------
T ss_pred HHHHHHHHHHHHCCCCeEEccCCc--cEEEEEEcC------CCCCHHHHHHHHHHC-CCEEechHHhcCC----------
Confidence 999999999874 5 576655543 678888886 245677899999876 9999776544211
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...++++|++++.. +++++++++++|++++++
T Consensus 361 --~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 361 --GGGENTLRLSYATL-DREGIAEGVRRLGRALKG 392 (397)
T ss_dssp --SCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 12357999999875 899999999999998864
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=254.53 Aligned_cols=342 Identities=12% Similarity=0.099 Sum_probs=242.7
Q ss_pred CeEEeccCCCC--CCcHHHHHHHHHHHHHHhcCCchhh--hhhhhHHHHHHHHHHHhHhCCCC-C-CcEEEecChhHHHH
Q 012991 39 GVARINNGSFG--SCPKSVLADQQKWQLKFLQQPDDFY--FNSLRKGILESRAAVKDLINADD-V-GEISLVDNATTAAA 112 (452)
Q Consensus 39 ~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~-~-~~i~~t~g~t~a~~ 112 (452)
.+++|+.+.+. +.|+.|.+++.+.+.... ...| .....+..+++.+.+++++|.+- + +++++|+|+++|+.
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~---~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~ 116 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGG---VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 116 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTH---HHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCC---CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHH
Confidence 47899876655 566779999988876421 0011 12345677888888999888741 2 69999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC--CChHHH-HHHHHHHHhccccCCC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL--ASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~--~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
.++.++ +++||+|+++.++|.+....+ +..|.+++.++..... ++.+.+ +++|+++++ +
T Consensus 117 ~~~~~l--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~------~ 178 (407)
T 3nra_A 117 LAVAAT--------VARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK------A 178 (407)
T ss_dssp HHHHTT--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH------T
T ss_pred HHHHHh--------CCCCCEEEEcCCcccchHHHH----HHcCCEEEEeecccccccCcCCCcCHHHHHHHHh------h
Confidence 999876 588999999999999876554 4569999999752110 122333 899999994 4
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccccc-----ccCccEEEEcCcccCcC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVK-----EIGADFYVSNLHKWFFC 257 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~-----~~~~d~~~~s~~K~l~g 257 (452)
++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ...+. ..+.++++.|++|+ +|
T Consensus 179 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~-~g 256 (407)
T 3nra_A 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGA-TVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKT-ES 256 (407)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSST-TC
T ss_pred CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccc-cC
Confidence 7889999999999999999 8899999999999 7999999986332 11211 23456899999997 45
Q ss_pred CCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 258 ~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
++| +|+++.++++++. + ... ...+..+++...+.++..+++.. .+.++..+++.+++++++.
T Consensus 257 ~~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~ 320 (407)
T 3nra_A 257 LSGYRLGVAFGSRAIIAR-M-EKL-----------QAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDELL 320 (407)
T ss_dssp CGGGCCEEEEECHHHHHH-H-HHH-----------HHHHTSSSCHHHHGGGGGTTCCC---TTHHHHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEEcCHHHHHH-H-HHH-----------HhhhccCCChHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH
Confidence 444 7999888777664 1 111 01111222222333333333211 1135667788889999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.+++++.+..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.. ...++
T Consensus 321 ~~L~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------~~~~~ 379 (407)
T 3nra_A 321 HVLRGCEGVFARTPQA--GSYLFPRLPK-----LAVAPAEFVKILRLQAGVVVTPGTEFSP--------------HTADS 379 (407)
T ss_dssp HHHHTSTTCBCCCCSB--SSEECCBCCC-----BSSCHHHHHHHHHHHHCEECEEGGGTCT--------------TCTTB
T ss_pred HHHhcCCCceeccCCe--eEEEEEeCCC-----CCCCHHHHHHHHHHhCCEEEeCchhhCC--------------CCCCE
Confidence 9998887887766554 5677777752 1456778999987656999987766532 34679
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|++++. ++++|++++++|++++++
T Consensus 380 iRis~~~--~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 380 VRLNFSQ--DHEAAVAAARRIVTLVER 404 (407)
T ss_dssp EEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 9999985 899999999999998865
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=250.40 Aligned_cols=390 Identities=14% Similarity=0.050 Sum_probs=252.3
Q ss_pred CCCCCCHHHHHhhhcc-------CCCCeEEeccCCCCCCcHHH-HHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHH
Q 012991 20 LTRCISEAEIRDEFSH-------HQHGVARINNGSFGSCPKSV-LADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVK 90 (452)
Q Consensus 20 ~~~~~~~~~ir~~~~~-------~~~~~~~l~~~~~~~~p~~v-~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la 90 (452)
|..+.+++++.+++.. ..++. |++.-..+..+..+ .+.+...+ +.+...+ .+....++.+++.++++
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~~p~-f~~~~~~~~~~~~~~~e~l~~~~---~~~~~~~~~~p~~~~le~~~~~~l~ 145 (511)
T 3vp6_A 70 SDHPESLEQILVDCRDTLKYGVRTGHPR-FFNQLSTGLDIIGLAGEWLTSTA---NTNMFTYEIAPVFVLMEQITLKKMR 145 (511)
T ss_dssp CSSCCCHHHHHHHHHHHHHTSCCTTSTT-EESSSSCCCCHHHHHHHHHHHHH---CCCSSCTTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCCC-ceEeecCCCcHHHHHHHHHHHHh---ccCCCCcccCchHHHHHHHHHHHHH
Confidence 4445677666654421 12222 55544444333333 33333332 2222222 22455667788999999
Q ss_pred hHhCCCC-CCcEEEecChhHHHHHHHHHhhcccc----c-C-CCCCCCEEEEeCCcchhHHHHHHHHHHhcCc---EEEE
Q 012991 91 DLINADD-VGEISLVDNATTAAAIVLQQIGRGFT----E-G-RFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG---SVVE 160 (452)
Q Consensus 91 ~~~~~~~-~~~i~~t~g~t~a~~~~~~~l~~~~~----~-~-~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~---~v~~ 160 (452)
+++|.+. .+.++||+|||+|+..++.++...+. + . ...+++.|+++..+|.++..++.. .|. +++.
T Consensus 146 ~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~----~g~g~~~~~~ 221 (511)
T 3vp6_A 146 EIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA----LGFGTDNVIL 221 (511)
T ss_dssp HHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHH----TTSCGGGEEE
T ss_pred HHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHH----cCCCCCcEEE
Confidence 9999963 36899999999999998887753210 0 0 002567899999999998777654 466 8888
Q ss_pred EeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc--
Q 012991 161 VQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI-- 237 (452)
Q Consensus 161 ~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-- 237 (452)
+ +.+.++.+ +++|+++|++....+.+|++|++++++|++|.+.|+++|+++|++||+ ++|+|++++.+....
T Consensus 222 v----~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~-~lhvD~a~~~~~~~~~~ 296 (511)
T 3vp6_A 222 I----KCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL-WLHVDAAWGGGLLMSRK 296 (511)
T ss_dssp E----CBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTC-EEEEEETTGGGGGGCTT
T ss_pred e----ecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCC-EEEEEccchhhHhhChh
Confidence 8 44445555 899999997543334459999999999999999999999999999999 699999999877632
Q ss_pred ---ccc-ccCccEEEEcCcccCcCCCCcEEEEEecCc-ccc--CCCCCceeccCCC-Ccccc---cccccccCccccccH
Q 012991 238 ---DVK-EIGADFYVSNLHKWFFCPPSVAFLYCRKSI-LSS--DMHHPVVSHEFGN-GLPIE---SAWIGTRDYSAQLVI 306 (452)
Q Consensus 238 ---~~~-~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~-~~~--~l~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~ 306 (452)
.+. ..++|++++++|||+++|.|+|+++++++. +.. .....+....... ..... .....+.. ...+++
T Consensus 297 ~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~-~~al~~ 375 (511)
T 3vp6_A 297 HRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH-VDIFKF 375 (511)
T ss_dssp TGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCC-CCHHHH
T ss_pred hhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCc-hHHHHH
Confidence 122 125799999999999999999999997653 332 0112221100000 00000 00011111 244556
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEc-CCccccC--C-------hhhHHHH
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL-PSRLRVM--G-------EDDALRL 376 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-------~~~~~~l 376 (452)
+.+++.+... |++++.++..++++++.+.|.+.+++++..+.....++++|.+ |...... + .....++
T Consensus 376 ~~al~~~g~~--gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l 453 (511)
T 3vp6_A 376 WLMWKAKGTV--GFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKI 453 (511)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHH
Confidence 6777766643 8899999999999999999998889988763111255666654 3111000 0 0113468
Q ss_pred HHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|.++ |+.+... .+. ....+++|+++ +..++.+||++++++|+++.+
T Consensus 454 ~~~L~~~-G~~~~~~-~~~--------------~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 454 KALMMES-GTTMVGY-QPQ--------------GDKANFFRMVISNPAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp HHHHHHH-TSCEEEE-EEE--------------TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhc-CCEEEEE-EEe--------------CCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 8888776 7654331 111 12345899999 788999999999999998764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=249.00 Aligned_cols=330 Identities=12% Similarity=0.041 Sum_probs=233.0
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCC---------CcEEEecChhHHHHHHHHHhhccccc-----------CCCCCCCEEEE
Q 012991 76 NSLRKGILESRAAVKDLINADDV---------GEISLVDNATTAAAIVLQQIGRGFTE-----------GRFHRNDTVLM 135 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~---------~~i~~t~g~t~a~~~~~~~l~~~~~~-----------~~~~~g~~Vl~ 135 (452)
....++.+++.+++++++|.++. ...++|+|||+|+..++.+....+.. ....+++.|++
T Consensus 114 p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~ 193 (481)
T 4e1o_A 114 PACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYA 193 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEE
Confidence 45567788889999999999632 26799999999999988876432110 00125679999
Q ss_pred eCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHH
Q 012991 136 LHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVK 214 (452)
Q Consensus 136 ~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~ 214 (452)
+..+|.|+.++... .|.+++.++ .++++.+ +++|+++|++....+..+.+|++++++|++|.+.|+++|++
T Consensus 194 s~~~H~s~~~~~~~----~g~~~~~v~----~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~ 265 (481)
T 4e1o_A 194 SDQAHSSVEKAGLI----SLVKMKFLP----VDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265 (481)
T ss_dssp ETTSCHHHHHHHHH----HTCEEEEEC----CCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred cCcchHHHHHHHHh----CCCceEEEE----cCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHH
Confidence 99999998777643 589999994 4445556 89999999754333345889999999999999999999999
Q ss_pred HHHHcCCCEEEEecccccCCcccc-cc--cc---CccEEEEcCcccCcCCCCcEEEEEecCcc-cc--CCCCCceeccCC
Q 012991 215 ICRDEGVDQVFVDAAHAMGSIKID-VK--EI---GADFYVSNLHKWFFCPPSVAFLYCRKSIL-SS--DMHHPVVSHEFG 285 (452)
Q Consensus 215 l~~~~~~~~~ivD~a~~~g~~~~~-~~--~~---~~d~~~~s~~K~l~g~~G~G~l~~~~~~~-~~--~l~~~~~~~~~~ 285 (452)
+|++||+ ++|+|+|++.+....+ .. .. .+|++++++|||+++|.|+|++++++... .. ....++......
T Consensus 266 la~~~~~-~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~ 344 (481)
T 4e1o_A 266 ICAREGL-WLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS 344 (481)
T ss_dssp HHHHHTC-EEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT
T ss_pred HHHHcCC-eEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc
Confidence 9999999 6999999987654221 11 11 35999999999999999999999876533 21 011222211100
Q ss_pred CCc--ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCC
Q 012991 286 NGL--PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPS 363 (452)
Q Consensus 286 ~~~--~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (452)
... .......++.. ...+.++++++.+... |++++.++..++++++.+.|.+++++++..++. .++++|.++.
T Consensus 345 ~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~--~~~v~f~~~~ 419 (481)
T 4e1o_A 345 GVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVK--NLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH--LGLVVFRLKG 419 (481)
T ss_dssp TTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCC--SSEEEEEESS
T ss_pred CCCCCcccccccCCCC-ccHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc--eeEEEEEeCC
Confidence 000 00001111112 2345566677766643 889999999999999999999988998876654 6788898852
Q ss_pred ccccCChhhHHHHHHHHhhhcce-EeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHHHHh
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGV-EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~ 441 (452)
.+....++.+.|.++ |+ ++..... ....++|+++..+ +|++||++++++|+++.+
T Consensus 420 -----~~~~~~~l~~~L~~~-g~~~~~~~~~-----------------~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 476 (481)
T 4e1o_A 420 -----PNSLTENVLKEIAKA-GRLFLIPATI-----------------QDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT 476 (481)
T ss_dssp -----CHHHHHHHHHHHHHH-CSSBCEEEEE-----------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHhC-CeEEEEeeEE-----------------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 233457899999876 64 4432221 2246899998755 589999999999999876
Q ss_pred c
Q 012991 442 E 442 (452)
Q Consensus 442 ~ 442 (452)
+
T Consensus 477 ~ 477 (481)
T 4e1o_A 477 L 477 (481)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=247.62 Aligned_cols=324 Identities=13% Similarity=0.073 Sum_probs=230.8
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
+..+++|+.+..+ +.|+.+.+++.+.+... +.....+. .....++++++++++|++ +++|++|+|+|+|+.+++
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~~y~-~~~~~~lr~~la~~~g~~-~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGPD---GAALRIYP-SASSQKLREVAGELYGFD-PSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTTT---CGGGGSCC-CSSCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHH
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhcc---cchhhcCC-CCchHHHHHHHHHHhCcC-cceEEEcCCHHHHHHHHH
Confidence 4568999888765 56788999998876531 01111121 122478999999999985 789999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.++ +++||+|++++++|++....+ ...|.+++.++. +++..+ +++++ ..++++|+
T Consensus 100 ~~l--------~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~v~~----~~~~~~-~~l~~--------~~~~~~v~ 154 (360)
T 3hdo_A 100 RAF--------AAEGEEIGYVHPSYSYYGTLA----EVQGARVRTFGL----TGDFRI-AGFPE--------RYEGKVFF 154 (360)
T ss_dssp HHH--------CCTTCEEEEESSSCTHHHHHH----HHHTCEEEEECB----CTTSSB-TTCCS--------SBCSSEEE
T ss_pred HHH--------hCCCCEEEEcCCChHHHHHHH----HHCCCEEEEeeC----CCCCCH-HHHHh--------hcCCCEEE
Confidence 987 588999999999999876655 445999999954 332222 22211 12467999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC--ccccc-cccCccEEEEcCcccCcCCCC--cEEEEEecCc
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS--IKIDV-KEIGADFYVSNLHKWFFCPPS--VAFLYCRKSI 270 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~--~~~~~-~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~ 270 (452)
+++++||||.++|+++|.++|+++|+ ++|+|++|+... ..... ...+.++++.|++|+ +|++| +|++++++++
T Consensus 155 i~~p~nptG~~~~~~~l~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~ 232 (360)
T 3hdo_A 155 LTTPNAPLGPSFPLEYIDELARRCAG-MLVLDETYAEFAESNALELVRRHENVVVTRTLSKS-YSLAGMRIGLAIARPEV 232 (360)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHBSS-EEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTT-TSCTTSCCEEEECCHHH
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHCCC-EEEEECChHhhCCcchhHHhccCCCEEEEecchHh-hcCCccceeeEeeCHHH
Confidence 99999999999999999999999999 899999987421 11111 123456888899997 44444 7998888777
Q ss_pred cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 012991 271 LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP 350 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 350 (452)
++. + .... ...+.+...+.++.++++.. +.++..+++++++++++.+.|.++ ++.+..+.
T Consensus 233 ~~~-~-~~~~-------------~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 292 (360)
T 3hdo_A 233 IAA-L-DKIR-------------DHYNLDRLAQAACVAALRDQ----AYLSECCRRIRETREWFTTELRSI-GYDVIPSQ 292 (360)
T ss_dssp HHH-H-HHHS-------------CSCCSCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCS
T ss_pred HHH-H-HHhC-------------CCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCC
Confidence 664 1 1110 01233444444444444431 146788888999999999999987 77665332
Q ss_pred ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHH
Q 012991 351 EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~ 430 (452)
+.++++.++ +.+..++.+.|.+ +||.+..+..+ ..++++|++++ +.+|++
T Consensus 293 ---~~~~~~~~~-------~~~~~~l~~~l~~-~gi~v~~~~~~----------------~~~~~iRis~~---~~~e~~ 342 (360)
T 3hdo_A 293 ---GNYLFATPP-------DRDGKRVYDGLYA-RKVLVRHFSDP----------------LLAHGMRISIG---TREEME 342 (360)
T ss_dssp ---SSEEEEECT-------TCCHHHHHHHHHH-TTEECBCCCST----------------TTTTSEEEECC---CHHHHH
T ss_pred ---ccEEEEECC-------CCCHHHHHHHHHH-CCEEEEECCCC----------------CCCCEEEEEcC---CHHHHH
Confidence 567888775 3467889999976 59999754331 23579999998 899999
Q ss_pred HHHHHHHHHHhc
Q 012991 431 KFRDAVILLVEE 442 (452)
Q Consensus 431 ~l~~~l~~~~~~ 442 (452)
+++++|+++.+.
T Consensus 343 ~l~~al~~~~~~ 354 (360)
T 3hdo_A 343 QTLAALKEIGEG 354 (360)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 999999998753
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=248.99 Aligned_cols=335 Identities=15% Similarity=0.127 Sum_probs=241.4
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
.++++|+.+.+. +.|+.+.+++.+.+.. ... |.......++++.++++++++ ++++++|+|||+|+.+++.
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~--y~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 96 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRALGR-----QDQ--YAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLLQ 96 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTTT-----SCS--CCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHH-----hcC--CCCCCCCHHHHHHHHHhcCCC-hhhEEEcCChHHHHHHHHH
Confidence 457888877655 4677799998887643 111 222334678999999999996 6889999999999999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++ .++||+|++++++|++....+ +..|.+++.++.+... +++.+ +++|++++ .+++++|+
T Consensus 97 ~~--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l------~~~~~~v~ 157 (381)
T 1v2d_A 97 SL--------VGPGDEVVVLEPFFDVYLPDA----FLAGAKARLVRLDLTP-EGFRLDLSALEKAL------TPRTRALL 157 (381)
T ss_dssp HH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEEET-TEEECCHHHHHTTC------CTTEEEEE
T ss_pred Hh--------CCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeCCCCC-ccCCcCHHHHHHhc------CcCCEEEE
Confidence 87 478999999999999976543 5569999999652000 12233 88999888 56799999
Q ss_pred EeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccc--ccCccEEEEcCcccCcCCCC--cEEEE
Q 012991 196 IDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVK--EIGADFYVSNLHKWFFCPPS--VAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~--~~~~d~~~~s~~K~l~g~~G--~G~l~ 265 (452)
+++++||||.++| +++|+++|++||+ ++|+|++++.+.. +.++. ..+.|+++.|+||+ +|++| +|+++
T Consensus 158 ~~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~-~~~~G~r~G~~~ 235 (381)
T 1v2d_A 158 LNTPMNPTGLVFGERELEAIARLARAHDL-FLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKR-LEATGYRVGWIV 235 (381)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHH-TTCGGGCCEEEE
T ss_pred ECCCCCCCCCccCHHHHHHHHHHHHHcCC-EEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhh-cCCcccceEEEE
Confidence 9999999999987 7889999999999 7999999975432 22322 34689999999997 56666 89999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++++. + ... ......+.+...+.++.++++.... ..+++.++++++++++++.+.|.+. +++
T Consensus 236 ~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 300 (381)
T 1v2d_A 236 GPKEFMPR-L-AGM-----------RQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAM-GLR 300 (381)
T ss_dssp CCTTTHHH-H-HHH-----------HHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred eCHHHHHH-H-HHH-----------HhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence 98877764 1 111 0011133444455555556654421 2257888999999999999999885 787
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+..+.. +.++++.++. . + +...|.+ +||.+..+..+... ...++++|++++. +
T Consensus 301 ~~~~~~--~~~~~~~~~~------~-~---~~~~l~~-~gi~v~~g~~~~~~------------~~~~~~iRi~~~~--~ 353 (381)
T 1v2d_A 301 VYVPEG--TYFLMAELPG------W-D---AFRLVEE-ARVALIPASAFYLE------------DPPKDLFRFAFCK--T 353 (381)
T ss_dssp EECCSB--SSEEEEECTT------C-C---HHHHHHH-TCEECEEGGGGCSS------------SCCTTEEEEECCS--C
T ss_pred ecCCCc--ceEEEEecCh------H-h---HHHHHHh-CCEEEecchHhCCC------------CCCCCEEEEEeCC--C
Confidence 766543 5678888762 1 2 5556644 69999776554221 1235799999986 8
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 012991 426 LEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~~ 443 (452)
.+++++++++|+++++..
T Consensus 354 ~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 354 EEELHLALERLGRVVNSP 371 (381)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999998653
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=244.31 Aligned_cols=335 Identities=16% Similarity=0.144 Sum_probs=242.2
Q ss_pred CCCeEEeccCCCC--CCcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSFG--SCPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
++.+++|..+.+. ..++.+.+++.+.+..+... ......++..+..++++++++++++.+ ..+++++|++|+..
T Consensus 58 g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~ 134 (409)
T 3kki_A 58 SPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFD---ECLLSQSGWNANVG 134 (409)
T ss_dssp CTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCS---EEEEESCHHHHHHH
T ss_pred CCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCC---eEEEecchHHHHHH
Confidence 4557777655432 34677999998887653111 111222334456778999999999985 35666777899999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ +++||.|+++.+.|.+...++.. .|.++..++ ..+ +++|++++++ .++++
T Consensus 135 ~l~~~--------~~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~----~~d----~~~le~~l~~-----~~~~~ 189 (409)
T 3kki_A 135 LLQTI--------CQPNTNVYIDFFAHMSLWEGARY----ANAQAHPFM----HNN----CDHLRMLIQR-----HGPGI 189 (409)
T ss_dssp HHHHH--------CCTTCEEEEETTSCHHHHHHHHH----TTCEEEEEC----TTC----HHHHHHHHHH-----HCSCE
T ss_pred HHHHh--------cCCCCEEEECCCcCHHHHHHHHH----cCCeEEEec----CCC----HHHHHHHHHh-----cCCeE
Confidence 99877 58999999999999998776643 588888873 222 7888988863 34799
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---------cccccCccEEEEcCcccCcCCCCcEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
|++++++||||.+.|+++|.++|++||+ ++|+|++|+.+.... +.. .++|+++.|++|++ ++.| |++
T Consensus 190 vi~~~~~nptG~~~~l~~l~~la~~~~~-~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~-~~~g-g~v 265 (409)
T 3kki_A 190 IVVDSIYSTLGTIAPLAELVNISKEFGC-ALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTF-AYRA-GAI 265 (409)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTT-CSSC-EEE
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHcCC-EEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhh-CCCc-eEE
Confidence 9999999999999999999999999999 799999998755421 121 25789999999985 4445 898
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
+.++++++. + .... ....+.++.+...+.++.++++.... . +.++++++++++++.+.|.++ ++
T Consensus 266 ~~~~~~~~~-~-~~~~---------~~~~~~~~~~~~~~aa~~aal~~~~~---~-~~~~~~~~~~~~~l~~~L~~~-g~ 329 (409)
T 3kki_A 266 WCNNEVNRC-V-PFIS---------YPAIFSSTLLPYEAAGLETTLEIIES---A-DNRRQHLDRMARKLRIGLSQL-GL 329 (409)
T ss_dssp EESSSGGGT-H-HHHC---------HHHHHSBCCCHHHHHHHHHHHHHHHH---C-HHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred EECHHHHHH-H-HHhC---------cCccccCCCcHHHHHHHHHHHHHHhc---C-HHHHHHHHHHHHHHHHHHHHc-CC
Confidence 888887765 1 1100 00111123333444455566676654 2 678888999999999999887 66
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+.. .+.++++.++ ...+..++.+.|.++ ||.+...+.+.. ....+++|++++..+
T Consensus 330 ~~~~----~~~~~~~~~~------~~~~~~~~~~~L~~~-Gv~v~~~~~~~~-------------~~~~~~iRi~~~~~~ 385 (409)
T 3kki_A 330 TIRS----ESQIIGLETG------DERNTEKVRDYLESN-GVFGSVFCRPAT-------------SKNKNIIRLSLNSDV 385 (409)
T ss_dssp CCCC----SSSEEEEEEE------SHHHHHHHHHHHHHT-TEECEEECTTSS-------------CTTCEEEEEECCTTC
T ss_pred ccCC----CCCEEEEEeC------CHHHHHHHHHHHHHC-CceEeeeCCCCc-------------CCCCcEEEEEccCCC
Confidence 6552 2678888776 344567899999876 999876544311 134579999999989
Q ss_pred CHHHHHHHHHHHHHHHhcc
Q 012991 425 TLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~~ 443 (452)
|++||++++++|+++++..
T Consensus 386 t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 386 NDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998753
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=241.47 Aligned_cols=316 Identities=12% Similarity=0.092 Sum_probs=226.1
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
.+.+++|+.+... +.|+.+.+++.+....... | +.....+++++++++++++ +++|++|+|+++++.+++
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~-------y-~~~~~~~lr~~la~~~~~~-~~~i~~t~G~~~~l~~~~ 85 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAARINR-------Y-PFDAEPRVMRKLAEHFSCP-EDNLMLVRGIDECFDRIS 85 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGGGTTS-------C-CTTHHHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHH
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhhhhcc-------C-CCCchHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHH
Confidence 4578999888543 5677799998886543211 2 2356889999999999996 789999999999999998
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.+ + +||+|++++++|.+....+ +..|.+++.+++ ++++.+ ++++++. .++++|
T Consensus 86 ~~---------~-~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~----~~~~~~d~~~l~~~--------~~~~~v 139 (337)
T 3p1t_A 86 AE---------F-SSMRFVTAWPGFDGYRARI----AVSGLRHFEIGL----TDDLLLDPNDLAQV--------SRDDCV 139 (337)
T ss_dssp HH---------S-TTSEEEEESSSCSHHHHHH----TTSCCEEEEECB----CTTSSBCHHHHTTC--------CTTEEE
T ss_pred Hh---------c-CCCeEEEeCCCcHHHHHHH----HHcCCEEEEecC----CCCCCCCHHHHHhh--------cCCCEE
Confidence 84 3 7899999999999875554 556999999954 333333 6766643 357899
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC--CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCc
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG--SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSI 270 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g--~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~ 270 (452)
++++++||||.++|++++.++|+++++ + |+|++++.. .........+.++++.|+||+ +|++| +|+++.++++
T Consensus 140 ~i~~p~nptG~~~~~~~l~~l~~~~~~-~-ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~-~g~~G~r~G~~~~~~~~ 216 (337)
T 3p1t_A 140 VLANPSNPTGQALSAGELDQLRQRAGK-L-LIDETYVDYSSFRARGLAYGENELVFRSFSKS-YGLAGLRLGALFGPSEL 216 (337)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCSE-E-EEECTTGGGSSCSSSCCCCBTTEEEEEESSST-TCCTTTCCEEEECCHHH
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCc-E-EEECCChhhccccccccccCCCEEEEeeCchh-ccCcchheEEEEeCHHH
Confidence 999999999999999999999999987 4 559998632 112222233567899999997 55444 6999888877
Q ss_pred cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 012991 271 LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP 350 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 350 (452)
+.. + .... ...+.+...+.++..+++... .++..+++..++++++.+.|.++ ++.+..+.
T Consensus 217 ~~~-l-~~~~-------------~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 276 (337)
T 3p1t_A 217 IAA-M-KRKQ-------------WFCNVGTLDLHALEAALDNDR----AREAHIAKTLAQRRRVADALRGL-GYRVASSE 276 (337)
T ss_dssp HHH-H-HTTS-------------CTTCSCHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS
T ss_pred HHH-H-Hhhc-------------CCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHC-cCEECCCC
Confidence 765 2 1110 112333334444443433221 34566677778889999999887 77765443
Q ss_pred ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHH
Q 012991 351 EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~ 430 (452)
++++++..+ +..++.+.|.+ +||.+..+..+. .++++|+|++ +.+|++
T Consensus 277 ---~~~~~~~~~---------~~~~~~~~l~~-~gi~v~~g~~~~----------------~~~~iRis~~---~~~~~~ 324 (337)
T 3p1t_A 277 ---ANFVLVENA---------AGERTLRFLRE-RGIQVKDAGQFG----------------LHHHIRISIG---REEDND 324 (337)
T ss_dssp ---SSEEEEECT---------TTHHHHHHHHH-TTEECEEGGGGT----------------CCSEEEEECC---CHHHHH
T ss_pred ---CeEEEEEcC---------CHHHHHHHHHH-CCeEEEECccCC----------------CCCeEEEecC---CHHHHH
Confidence 567777765 23467777866 599998776652 2479999998 799999
Q ss_pred HHHHHHHHHHhc
Q 012991 431 KFRDAVILLVEE 442 (452)
Q Consensus 431 ~l~~~l~~~~~~ 442 (452)
+++++|+++.++
T Consensus 325 ~l~~al~~~~~~ 336 (337)
T 3p1t_A 325 RLLAALAEYSDH 336 (337)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHhhc
Confidence 999999988653
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=249.15 Aligned_cols=356 Identities=13% Similarity=0.130 Sum_probs=234.9
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHH-----hcCCchhhhhhhhHHHHHHHHHHHhHhC--------CCCCCcEEEe
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKF-----LQQPDDFYFNSLRKGILESRAAVKDLIN--------ADDVGEISLV 104 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~i~~t 104 (452)
.+++.|+.+.....++.+.+++.+..... .........|....+..++++.++++++ ++ +++|++|
T Consensus 36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~~~i~~~ 114 (428)
T 1iay_A 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFD-PERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCC-TTSCEEE
T ss_pred CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC-hhhEEEc
Confidence 46788886655555556777776431000 0000011122222336778888888876 54 6899999
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
+|+++++.+++.++ .++||+|++++++|++....+ +...|.+++.++.+. ++...+ ++++++++++
T Consensus 115 ~G~~~ai~~~~~~~--------~~~gd~Vl~~~p~y~~~~~~~---~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~ 181 (428)
T 1iay_A 115 GGATGANETIIFCL--------ADPGDAFLVPSPYYPAFNRDL---RWRTGVQLIPIHCES--SNNFKITSKAVKEAYEN 181 (428)
T ss_dssp EHHHHHHHHHHHHH--------CCTTCEEEEESSCCTTHHHHT---TTTTCCEEEEECCCT--TTTTCCCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHh--------CCCCCeEEEccCCCcchHHHH---HHhcCCEEEEeecCC--ccCCcCCHHHHHHHHHH
Confidence 99999999999987 478999999999999875543 334689999885421 111223 7888888864
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc----ccccc---------cCcc--
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKE---------IGAD-- 245 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~---------~~~d-- 245 (452)
....+.++++|++++++||||.++| +++|+++|+++|+ ++|+|++|+.+... .++.. +++|
T Consensus 182 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 260 (428)
T 1iay_A 182 AQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNI-HLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLV 260 (428)
T ss_dssp HHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC-EEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSE
T ss_pred HHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCe-EEEEeccccccccCCCCccCHHHhccccccccCCCCcE
Confidence 2212357999999999999999999 8899999999999 89999999753221 11111 1256
Q ss_pred EEEEcCcccCcCCCC--cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHH
Q 012991 246 FYVSNLHKWFFCPPS--VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDG 322 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G--~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~ 322 (452)
+++.|+||+ +|++| +|++++ ++++++. + ... .. ..+.+...+.++..+++.........+.
T Consensus 261 iv~~s~sK~-~g~~Glr~G~~~~~~~~~~~~-~-~~~-----------~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 324 (428)
T 1iay_A 261 HIVYSLSKD-MGLPGFRVGIIYSFNDDVVNC-A-RKM-----------SS--FGLVSTQTQYFLAAMLSDEKFVDNFLRE 324 (428)
T ss_dssp EEEEESTTT-SSCGGGCEEEEEESCHHHHHH-H-HHH-----------HT--TSCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEecchhh-cCCCCceEEEEEeCCHHHHHH-H-HHH-----------Hh--cccCCHHHHHHHHHHhcChHHHHHHHHH
Confidence 889999997 56556 599988 4555553 1 111 00 0122333333333333321100113567
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
++++++++++++.+.|.++ ++.+..+.. ++++++.++......+..+..++.+.|.+++||.+..+..+..
T Consensus 325 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~------ 395 (428)
T 1iay_A 325 SAMRLGKRHKHFTNGLEVV-GIKCLKNNA--GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC------ 395 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBCCCSS--SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC------
T ss_pred HHHHHHHHHHHHHHHHHhc-CCcccCCCe--eEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC------
Confidence 8888899999999999987 777655433 6788888863110001124567888887656999977655421
Q ss_pred CCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 403 AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++ .++++++++++++|++++++
T Consensus 396 --------~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 396 --------QEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp --------SSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred --------CCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 22579999998 57999999999999999865
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=251.10 Aligned_cols=343 Identities=12% Similarity=0.070 Sum_probs=244.7
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-DVGEISLVDNATTAAAIV 114 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a~~~~ 114 (452)
+..++.|..+... +.|+.+.+++.+.+... ...|.....+..+++.+.+++.++.+ ++++|++|+|+++|+..+
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a 135 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREH----IFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIA 135 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHC----CSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcC----CcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHH
Confidence 5778888777654 56788999999887541 11222223667788889999988832 368999999999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+.++ .++|++|++..+.|++....+ ...|.+++.+++.+ .+....+ +++|+++++ .+++++
T Consensus 136 ~~~~--------~~~gd~Vi~~~~~y~~~~~~~----~~~g~~~~~~~~~~-~~~~~~~d~~~le~~i~-----~~~~~~ 197 (421)
T 3l8a_A 136 LQAF--------SEKGDAVLINSPVYYPFARTI----RLNDHRLVENSLQI-INGRFEIDFEQLEKDII-----DNNVKI 197 (421)
T ss_dssp HHHH--------SCTEEEEEEEESCCHHHHHHH----HHTTEEEEEEECEE-ETTEEECCHHHHHHHHH-----HTTEEE
T ss_pred HHHh--------cCCCCEEEECCCCcHHHHHHH----HHCCCEEEeccccc-cCCCeeeCHHHHHHHhh-----ccCCeE
Confidence 9987 478999999999999876655 44699999986531 1111123 899999995 268999
Q ss_pred EEEeccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccccCCc----cccccc-----cCccEEEEcCcccCcCCCC-
Q 012991 194 AIIDHITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE-----IGADFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 194 v~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~-----~~~d~~~~s~~K~l~g~~G- 260 (452)
|++++++||+|.++ ++++|+++|++||+ ++|+|++|+.... ...+.. .+.++++.|++|++ |+.|
T Consensus 198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~ 275 (421)
T 3l8a_A 198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGV-ILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTF-NIAGT 275 (421)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHH-TCGGG
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhc-cCchh
Confidence 99999999999984 57889999999999 8999999875321 112211 24558899999974 4344
Q ss_pred -cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 -VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 -~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|+++++ +++.+. + .+.. .....++++...+.++.++++...+ .+++++++++++++++.+.|
T Consensus 276 ~~G~~~~~~~~l~~~-~-~~~~----------~~~~~~~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~~~l~~~L 340 (421)
T 3l8a_A 276 KNSFAIIQNESLRRK-F-QYRQ----------LANNQHEVPTVGMIATQAAFQYGKP---WLEELKTVIEGNIKLVIKEL 340 (421)
T ss_dssp CCEEEECCSHHHHHH-H-HHHH----------HHTTCSCCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred heEeEEcCCHHHHHH-H-HHHH----------HhcccCCCCHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6998887 565554 1 1110 0011134555555555556554332 36788888999999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.+.+++.+..+.. ..+.|+.++. .+.+..++.+.|.+++||.+..+..+.. ...+++|+
T Consensus 341 ~~~~~i~~~~~~~--~~~~~v~~~~-----~~~~~~~l~~~l~~~~gi~v~~g~~f~~--------------~~~~~iRi 399 (421)
T 3l8a_A 341 EAKTKIKVMEPEG--TYLVWLDFSA-----YAIAQPQLSEKLQNEAKVVLNDGAHFGK--------------EGKYFARL 399 (421)
T ss_dssp HHHCSCEEECCSB--SSEEEEECGG-----GTCCTTHHHHHHHHTTCEECEEGGGGCG--------------GGTTEEEE
T ss_pred HhCCCceEeCCCe--eEEEEEeccc-----cCCCHHHHHHHHHHhCCEEEECchhhCC--------------CCCCEEEE
Confidence 8887887766654 5566677752 1245668888887657999987665421 34689999
Q ss_pred cccccCCHHHHHHHHHHHHHHHh
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+++ +++++|++++++|+++++
T Consensus 400 ~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 400 NVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ECC--SCHHHHHHHHHHHHHHC-
T ss_pred Eec--CCHHHHHHHHHHHHHHHh
Confidence 998 489999999999998764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=249.77 Aligned_cols=336 Identities=14% Similarity=0.119 Sum_probs=234.9
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCc-hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE-ecChhHHHHHHHHHhh
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPD-DFYFNSLRKGILESRAAVKDLINADDVGEISL-VDNATTAAAIVLQQIG 119 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~-t~g~t~a~~~~~~~l~ 119 (452)
++.++++.+.|+.|++++.+... .... ..+...+.+..+++++++++++|+++++++++ |+|||+|+.+++.++
T Consensus 42 ~~~~~~~~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l- 117 (398)
T 2fyf_A 42 GRFGSGPSKVRLEQLQTLTTTAA---ALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL- 117 (398)
T ss_dssp CBCCSSSCCCCHHHHHGGGTTTT---TTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT-
T ss_pred ccccCCCCCCCHHHHHHHhhcCC---CccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh-
Confidence 44445566777879998876310 0011 11223345678999999999999963468998 999999999999987
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc--CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA--GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
+++| .+++....|... +...+... |.+++.+++++ +...+. .+ ++++++|+++
T Consensus 118 -------~~~g-v~~v~~~~~~~~---~~~~~~~~~~g~~~~~v~~~~-----g~~~~~---~i------~~~~~~v~~~ 172 (398)
T 2fyf_A 118 -------IDKR-SLHLTYGEFSAK---FASAVSKNPFVGEPIIITSDP-----GSAPEP---QT------DPSVDVIAWA 172 (398)
T ss_dssp -------CSSC-EEEEECSHHHHH---HHHHHHHCTTSCCCEEEECCT-----TCCCCC---CC------CTTCSEEEEE
T ss_pred -------cCCC-eEEEeCCHHHHH---HHHHHHHhCCCCceEEEecCC-----CCCCCc---cc------cCCCCEEEEe
Confidence 3555 233345555322 11124445 78888886531 111110 13 5689999999
Q ss_pred ccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC-
Q 012991 198 HITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH- 276 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~- 276 (452)
+++||||.+.|+++|.++ +|+ ++|+|++|+.+..++++. ++|++++|+||+++++.|+|++++++++++. +.
T Consensus 173 ~~~nptG~~~~~~~i~~~---~~~-~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~-l~~ 245 (398)
T 2fyf_A 173 HNETSTGVAVAVRRPEGS---DDA-LVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSR-IEA 245 (398)
T ss_dssp SEETTTTEECCCCCCTTC---C-C-EEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHH-HHH
T ss_pred CcCCCcceecchHHhhhh---cCC-eEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHH-hhc
Confidence 999999999999999887 899 799999999988877654 4799999999985555469999999887654 10
Q ss_pred --------CCceeccCCCCcccc----cccccccCccccccHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 277 --------HPVVSHEFGNGLPIE----SAWIGTRDYSAQLVIPSAVTFVSRFEGG-IDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 277 --------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~al~~~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
.++.. .+.... ....++++...++++.++++++.+. | ++.++++.+++++++.+.|.++++
T Consensus 246 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~~l~~~L~~~~g 319 (398)
T 2fyf_A 246 IAATGRWVPDFLS----LPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGN--GGLDWAVKRTADSSQRLYSWAQERPY 319 (398)
T ss_dssp HHHTTCCCCGGGC----HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccCCCCCcEEe----hHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11110 000000 1123566776777788888877753 5 899999999999999999998877
Q ss_pred CCcCC-Ccccccc-eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 344 TSLGS-PPEICAA-MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 344 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
+++.. ++...++ ++++.++ .+.+..++.+.|.++ ||.++.++.. ..++++|+|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~-gI~v~~g~~~----------------~~~~~iRis~~ 376 (398)
T 2fyf_A 320 TTPFVTDPGLRSQVVGTIDFV------DDVDAGTVAKILRAN-GIVDTEPYRK----------------LGRNQLRVAMF 376 (398)
T ss_dssp EEESCCSGGGBCSSEEEEEEC------TTSCHHHHHHHHHHT-TCBCCSCCTT----------------TCSSEEEEECC
T ss_pred ceeccCChhhcCCcEEEEECC------CCCCHHHHHHHHHHC-CcEEecCccc----------------CCCCEEEEEec
Confidence 77664 2222244 8888886 345678899999876 9998654221 22479999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++|++|+++++++|++++++
T Consensus 377 ~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 377 PAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998753
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=251.84 Aligned_cols=338 Identities=15% Similarity=0.116 Sum_probs=235.4
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC----CC-CCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----AD-DVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~~~i~~t~g~t~ 109 (452)
.++.+++|+.+.++ ..|+.+.+++ +.+.. ... .+.......++++.++++++ .+ +++++++|+|||+
T Consensus 41 ~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~----~~~--~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~ 113 (409)
T 2gb3_A 41 RGVRIHHLNIGQPDLKTPEVFFERI-YENKP----EVV--YYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSE 113 (409)
T ss_dssp TTCEEEECSSCCCCSCCCTHHHHHH-HHTCC----SSC--CCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHH-HHHhc----CCC--CCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHH
Confidence 46789999988876 4566688888 65431 111 12222335667777777764 21 2579999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK 189 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 189 (452)
|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.... +.... +++|++++ .+
T Consensus 114 a~~~~~~~~--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~-~~~~~-~~~l~~~l------~~ 173 (409)
T 2gb3_A 114 AILFSFAVI--------ANPGDEILVLEPFYANYNAFA----KIAGVKLIPVTRRME-EGFAI-PQNLESFI------NE 173 (409)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHHTCEEEEEECCGG-GTSCC-CTTGGGGC------CT
T ss_pred HHHHHHHHh--------CCCCCEEEEcCCCchhHHHHH----HHcCCEEEEeccCCC-CCCcc-HHHHHHhh------Cc
Confidence 999999987 478999999999999876655 445999999965310 01011 46777777 46
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccc-ccc-cCccEEEEcCcccCcCCCC-
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KID-VKE-IGADFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~-~~~-~~~d~~~~s~~K~l~g~~G- 260 (452)
++++|++++++||||.++| +++|.++|+++|+ ++|+|++++.+.. ... +.. .+.|+++.|+||+ +|++|
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G~ 251 (409)
T 2gb3_A 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGL-FLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKK-FSACGA 251 (409)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTT-TTCGGG
T ss_pred CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCC-EEEEECcccccccCCCCCCccccCCCCEEEEecchhc-cCCccc
Confidence 8999999999999999975 7889999999999 7999999986543 122 222 2568999999997 56666
Q ss_pred -cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 -VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 -~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|++++++ ++++. + ... ...+. +++...+.++.++++.... +++.++++++++++++.+.|
T Consensus 252 r~G~~~~~~~~l~~~-l-~~~-----------~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L 314 (409)
T 2gb3_A 252 RVGCLITRNEELISH-A-MKL-----------AQGRL-APPLLEQIGSVGLLNLDDS---FFDFVRETYRERVETVLKKL 314 (409)
T ss_dssp CCEEEECSCHHHHHH-H-HHH-----------HHHSC-CCCHHHHHHHHHHHTCCHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECcHHHHHH-H-HHH-----------HhccC-CCCHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHHH
Confidence 89999988 77654 1 111 00111 3333333334444432121 46778888899999999999
Q ss_pred HHHcCCCc-CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhh-----cceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 339 ANAWGTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR-----FGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 339 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
.++ ++.+ ..+.. +.++++.++ +.+..++.+.|.++ +||.+..+..+.... ...
T Consensus 315 ~~~-g~~~~~~~~~--~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~-----------~~~ 373 (409)
T 2gb3_A 315 EEH-GLKRFTKPSG--AFYITAELP-------VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTP-----------GLG 373 (409)
T ss_dssp HHT-TCCCBCCCSB--SSEEEEECS-------SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSST-----------TTT
T ss_pred HHc-CceeeeCCCe--eEEEEEEeC-------CCCHHHHHHHHHhccccccCcEEEeCchHhCCCC-----------CCC
Confidence 887 7776 54443 566777775 24567898888765 599997765442100 123
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|++++ ++++++++++++|++++++
T Consensus 374 ~~~iRis~~--~~~e~i~~~~~~l~~~l~~ 401 (409)
T 2gb3_A 374 KKEIRIACV--LEKDLLSRAIDVLMEGLKM 401 (409)
T ss_dssp SSEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 579999998 6999999999999998864
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=247.30 Aligned_cols=385 Identities=11% Similarity=0.032 Sum_probs=247.5
Q ss_pred CCCCCCCCCHHHHHhhhcc-----C---CCCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHH
Q 012991 17 KPKLTRCISEAEIRDEFSH-----H---QHGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESR 86 (452)
Q Consensus 17 ~~~~~~~~~~~~ir~~~~~-----~---~~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 86 (452)
.+.|...++++++.+++.. . .++ .|++.-..+. .|..+.+.+...+ +.+...+ .+....++.++++
T Consensus 44 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~---n~~~~~~~~~~~~~~le~~~~ 119 (486)
T 1js3_A 44 ATAPQEPDTFEDILQDVEKIIMPGVTHWHSP-YFFAYFPTASSYPAMLADMLCGAI---GCIGFSWAASPACTELETVMM 119 (486)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTGGGCCCTTST-TBCSSSCCCCCHHHHHHHHHHHHH---CCCCSSGGGCHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCCCCC-CceEeCCCCCCHHHHHHHHHHHHh---CcCccccccChhHHHHHHHHH
Confidence 3334556777666555421 1 122 2444433333 3344555555543 2222221 2234566777899
Q ss_pred HHHHhHhCCCC--------CCcEEEecChhHHHHHHHHHhhcccccCCC-CCC---------C-EEEEeCCcchhHHHHH
Q 012991 87 AAVKDLINADD--------VGEISLVDNATTAAAIVLQQIGRGFTEGRF-HRN---------D-TVLMLHCAFQAVKKSI 147 (452)
Q Consensus 87 ~~la~~~~~~~--------~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~-~~g---------~-~Vl~~~~~~~s~~~~~ 147 (452)
+++++++|.+. ...+++|+|||+|+..++.++...+..... ..| + .|+++.++|+++..++
T Consensus 120 ~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~ 199 (486)
T 1js3_A 120 DWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAG 199 (486)
T ss_dssp HHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHH
T ss_pred HHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHH
Confidence 99999999962 146899999999999998876321100000 002 2 3778999999977665
Q ss_pred HHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEE
Q 012991 148 QAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFV 226 (452)
Q Consensus 148 ~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~iv 226 (452)
.. .|++++.++ .++++.+ +++|+++|++....+..+.+|++++++|++|.+.|+++|+++|++||+ ++|+
T Consensus 200 ~~----~G~~v~~v~----~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~-~lhv 270 (486)
T 1js3_A 200 LI----GGVKLKAIP----SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDI-WLHV 270 (486)
T ss_dssp HH----HTCEEEEEC----CCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTC-EEEE
T ss_pred Hh----CCCceEEee----cCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-EEEE
Confidence 44 599999995 4445555 899999996543223346799999999999999999999999999999 6999
Q ss_pred ecccccCCcccc-ccc-----cCccEEEEcCcccCcCCCCcEEEEEecCc--cccCC--CCCceeccCC-CCccccc---
Q 012991 227 DAAHAMGSIKID-VKE-----IGADFYVSNLHKWFFCPPSVAFLYCRKSI--LSSDM--HHPVVSHEFG-NGLPIES--- 292 (452)
Q Consensus 227 D~a~~~g~~~~~-~~~-----~~~d~~~~s~~K~l~g~~G~G~l~~~~~~--~~~~l--~~~~~~~~~~-~~~~~~~--- 292 (452)
|++++.+....+ ... .++|++++++|||+++|.|+|+++++++. .+. + ..++...... .+.....
T Consensus 271 D~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~-~~~~~~yl~~~~~~~~~~~~~~~~ 349 (486)
T 1js3_A 271 DAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGA-FKLDPVYLKHSHQGSGLITDYRHW 349 (486)
T ss_dssp ECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGG-GC------------CCSCCCGGGS
T ss_pred ehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHH-hcCCchhhCCCcccccCCCCcccc
Confidence 999987765332 221 26899999999998888899999997653 232 1 1122111000 0000000
Q ss_pred ccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhh
Q 012991 293 AWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDD 372 (452)
Q Consensus 293 ~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (452)
....+.. ...+++.++++.+... |++++.++..++++++.+.|.+++++++..++. .+++.|.++. ....
T Consensus 350 ~~~~~rr-~~~~~~~~al~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~v~f~~~~-----~~~~ 419 (486)
T 1js3_A 350 QLPLGRR-FRSLKMWFVFRMYGVK--GLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT--LGLVCFRLKG-----SDGL 419 (486)
T ss_dssp SSCSCCC-CTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC--SSEEEEEESS-----CHHH
T ss_pred CCCCCCc-hhHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCc--eeEEEEEecC-----hHHH
Confidence 0001111 1234566666665543 788999999999999999999988888766543 6688887751 1112
Q ss_pred HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHhc
Q 012991 373 ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 373 ~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++.+.|.++ |+.+...... ...+++|+++ +.++|.+||+++++.|++++++
T Consensus 420 ~~~l~~~L~~~-g~~~~~~~~~----------------~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 420 NEALLERINSA-RKIHLVPCRL----------------RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp HHHHHHHHHHH-TSCBCEEEEE----------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCEEEEEEEE----------------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46788888776 7654222211 2256999997 5668999999999999988754
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=249.09 Aligned_cols=344 Identities=13% Similarity=0.102 Sum_probs=238.9
Q ss_pred CCeEEeccCCC-----CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------------CCCCCc
Q 012991 38 HGVARINNGSF-----GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------------ADDVGE 100 (452)
Q Consensus 38 ~~~~~l~~~~~-----~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~~ 100 (452)
.++++|+.+.+ .+.|+.+.+++.+.+... . ...|.......+++++++++++ ++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~----~-~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~ 106 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQ----E-CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDN 106 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTT----C-SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCC----c-cCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cce
Confidence 46899988864 366788999998876531 1 1122223446778888888887 54 689
Q ss_pred EEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHH
Q 012991 101 ISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKK 179 (452)
Q Consensus 101 i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~ 179 (452)
|++|+|+++|+.+++.++ +++||+|+++.++|++....+ ...|.+++.++... ++...+ +++|++
T Consensus 107 v~~~~g~~~al~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~ 172 (416)
T 1bw0_A 107 VVLCSGGSHGILMAITAI--------CDAGDYALVPQPGFPHYETVC----KAYGIGMHFYNCRP--ENDWEADLDEIRR 172 (416)
T ss_dssp EEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEEEEG--GGTTEECHHHHHH
T ss_pred EEEeCChHHHHHHHHHHh--------CCCCCEEEEcCCCcHhHHHHH----HHcCcEEEEeecCc--ccCCCCCHHHHHH
Confidence 999999999999999987 478999999999999876544 55699999886421 111223 899999
Q ss_pred HHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc--------ccccccc---Ccc
Q 012991 180 GIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI--------KIDVKEI---GAD 245 (452)
Q Consensus 180 ~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~--------~~~~~~~---~~d 245 (452)
++ .+++++|++++++||||.++| +++|+++|++||+ ++|+|++++.... ..++..+ +.+
T Consensus 173 ~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (416)
T 1bw0_A 173 LK------DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRL-PLFSDEIYAGMVFKGKDPNATFTSVADFETTVPR 245 (416)
T ss_dssp HC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-CEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCE
T ss_pred Hh------ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCCCCccCHHHccCCCcE
Confidence 88 567899999999999999999 8899999999999 7999999876321 1122222 235
Q ss_pred EEEEcCcccCcCCCC--cEEEEEecC--ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHH
Q 012991 246 FYVSNLHKWFFCPPS--VAFLYCRKS--ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID 321 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G--~G~l~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~ 321 (452)
+++.|++|+ ++.+| +|+++++++ +++. +...... . .....+++...+.++.++++.... ++++
T Consensus 246 i~~~s~sK~-~~~~Glr~G~~~~~~~~~~~~~-~~~~~~~--------~-~~~~~~~~~~~~~a~~~~l~~~~~--~~~~ 312 (416)
T 1bw0_A 246 VILGGTAKN-LVVPGWRLGWLLYVDPHGNGPS-FLEGLKR--------V-GMLVCGPCTVVQAALGEALLNTPQ--EHLD 312 (416)
T ss_dssp EEEEESTTT-TSCGGGCCEEEEEECTTCSCHH-HHHHHHH--------H-HHHHTCSCHHHHHHHHHHHHSSCH--HHHH
T ss_pred EEEecchhh-CCCCCceEEEEEeeCchhhHHH-HHHHHHH--------H-hccccCCCcHHHHHHHHHHhcccH--HHHH
Confidence 778899997 44455 799998774 4443 1100000 0 001133444455555555543111 1467
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
.++++++++++++.+.|.+++++.+..+.. +.++++.++... .....+..++.+.|.+++||.+..+..+.
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~gi~v~~g~~f~------ 383 (416)
T 1bw0_A 313 QIVAKIEESAMYLYNHIGECIGLAPTMPRG--AMYLMSRIDLEK-YRDIKTDVEFFEKLLEEENVQVLPGTIFH------ 383 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEEECCCCB--TTEEEEEECGGG-BSSCCSHHHHHHHHHHHHCEECEEGGGGT------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCe--eEEEEEeCCHHH-cCCCCCHHHHHHHHHHHCCEEEecccccC------
Confidence 788889999999999998876777655543 667887775210 00113567888887544599998766541
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|++++ +++++++++++.|++++++
T Consensus 384 ----------~~~~iRis~~--~~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 384 ----------APGFTRLTTT--RPVEVYREAVERIKAFCQR 412 (416)
T ss_dssp ----------CTTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 2469999996 5899999999999998865
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=245.80 Aligned_cols=338 Identities=9% Similarity=0.024 Sum_probs=235.4
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH----hC--CCCCCcEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL----IN--ADDVGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~--~~~~~~i~~t~g~t~a 110 (452)
+.+++|+.+..+ ..|+.+.+++.+.+... ...|... ..++++.++++ +| ++ +++|++|+|+++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~y~~~----~~~l~~~la~~l~~~~g~~~~-~~~v~~t~g~~~a 101 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDET----VLGYTGP----TEEYKKTVKKWMKDRHQWDIQ-TDWIINTAGVVPA 101 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHC----CCSSBCC----CHHHHHHHHHHHHHHHCCCCC-GGGEEEESSHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcC----CCCCCCC----cHHHHHHHHHHHHHHhCCCCC-hhhEEEcCCHHHH
Confidence 467888777765 45778999998887531 1112221 45555666655 47 43 6799999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ .++||+|+++.++|++....+ ...|.+++.++...+ +....+ +++|+++++ .+
T Consensus 102 ~~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~-~g~~~~d~~~l~~~l~-----~~ 163 (399)
T 1c7n_A 102 VFNAVREF--------TKPGDGVIIITPVYYPFFMAI----KNQERKIIECELLEK-DGYYTIDFQKLEKLSK-----DK 163 (399)
T ss_dssp HHHHHHHH--------CCTTCEEEECSSCCTHHHHHH----HTTTCEEEECCCEEE-TTEEECCHHHHHHHHT-----CT
T ss_pred HHHHHHHh--------cCCCCEEEEcCCCcHhHHHHH----HHcCCEEEecccccC-CCCEEEcHHHHHHHhc-----cC
Confidence 99999987 478999999999999876554 456999988854200 001123 899999994 26
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc-----cCccEEEEcCcccCcC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE-----IGADFYVSNLHKWFFC 257 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~-----~~~d~~~~s~~K~l~g 257 (452)
++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ..++.. .+.++++.|++|+ +|
T Consensus 164 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~-~~ 241 (399)
T 1c7n_A 164 NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDL-MLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKT-FN 241 (399)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSC-EEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHH-HT
T ss_pred CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhh-cc
Confidence 7999999999999999999 8899999999999 8999999986332 223322 2456889999997 55
Q ss_pred CCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 258 ~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
++| +|++++++ ++++. + .... .....++++...+.++.++++...+ .++.++++++++++++
T Consensus 242 ~~G~r~G~~~~~~~~~~~~-l-~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l 306 (399)
T 1c7n_A 242 IAGMGMSNIIIKNPDIRER-F-TKSR----------DATSGMPFTTLGYKACEICYKECGK---WLDGCIKVIDKNQRIV 306 (399)
T ss_dssp CGGGCCEEEECCCHHHHHH-H-HHHH----------HHTTCCCCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHH
T ss_pred ccchheEEEEECCHHHHHH-H-HHHH----------hhcccCCCCHHHHHHHHHHHhCChH---HHHHHHHHHHHHHHHH
Confidence 455 79998864 45554 1 1110 0000123444444444445543222 4677888889999999
Q ss_pred HHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 335 ARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 335 ~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.+.|.+ ++++.+..+.. +.++|+.++. .+.+..++.+.|.+++||.+.++..+.. ..+
T Consensus 307 ~~~L~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------~~~ 365 (399)
T 1c7n_A 307 KDFFEVNHPEIKAPLIEG--TYLQWIDFRA-----LKMDHKAMEEFMIHKAQIFFDEGYIFGD--------------GGI 365 (399)
T ss_dssp HHHHHHHCTTSBCCCCSB--SSEEEEECGG-----GCCCHHHHHHHHHHTTCCCCEEGGGGCG--------------GGT
T ss_pred HHHHHhhCCCCeEecCCc--eEEEEEEccc-----CCCCHHHHHHHHHHhCCEEEeCccccCC--------------CCC
Confidence 999988 67877665543 5566788762 0246778999986446999977655421 235
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++. ++++++++++.|++++++
T Consensus 366 ~~iRis~~~--~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 366 GFERINLAA--PSSVIQESLERLNKALKD 392 (399)
T ss_dssp TEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecc--CHHHHHHHHHHHHHHHHH
Confidence 799999986 478899999999998865
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=250.61 Aligned_cols=338 Identities=13% Similarity=0.053 Sum_probs=237.3
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CC-CcEEEecChhH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DV-GEISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~-~~i~~t~g~t~ 109 (452)
+..+++|+.+... ..++.+.+++.+.+... ....|.......++++++++++ |++ ++ ++|++|+|+++
T Consensus 46 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 46 PLPLINMAVGIPDGPTPQGIIDHFQKALTIP-----ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp SSCCEECCCCSCSSCCCHHHHHHHHHHTTCH-----HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred CCCEEecCCcCCCCCCCHHHHHHHHHHHhCC-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 3458899887665 35677888888765321 1111222234566777777777 874 33 69999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+. +...+ +++|+++++
T Consensus 121 al~~~~~~l--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~---~~~~~d~~~l~~~l~------ 179 (404)
T 2o1b_A 121 GLVAVPTCV--------INPGDYVLLPDPGYTDYLAGV----LLADGKPVPLNLEP---PHYLPDWSKVDSQII------ 179 (404)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCSSHHHHH----HHTTCEEEEEECCT---TTCCCCGGGSCHHHH------
T ss_pred HHHHHHHHh--------cCCCCEEEEcCCCchhHHHHH----HHCCCEEEEeccCc---ccCcCCHHHHHHhhc------
Confidence 999999987 478999999999999976654 44699999997531 11112 677888773
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccccc----CccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKEI----GADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~l~g~ 258 (452)
+++++|++++++||||.++| +++|+++|+++|+ ++|+|++++.+.. +.++... +.++++.|++|+ +|+
T Consensus 180 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~-~g~ 257 (404)
T 2o1b_A 180 DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDT-KIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKG-YNM 257 (404)
T ss_dssp HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSC-EEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTT-TTC
T ss_pred cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC-EEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchh-ccC
Confidence 57899999999999999986 6788999999999 7999999986432 2222222 457899999997 454
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + ... ...+..+.+...+.++.++++.... .++.++++++++++++.+
T Consensus 258 ~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~~ 321 (404)
T 2o1b_A 258 SGFRVGFAVGNKDMIQA-L-KKY-----------QTHTNAGMFGALQDAAIYALNHYDD---FLEEQSNVFKTRRDRFEA 321 (404)
T ss_dssp GGGCCEEEEECHHHHHH-H-HHH-----------HHHHCCCCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHH
T ss_pred chhheEeEecCHHHHHH-H-HHH-----------HhhccCCCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHH
Confidence 45 7999988877764 1 111 1111123444444444444443221 467788888999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++ ++.+..+.. +.++++.++ .+.+..++.+.|.+++||.+..+..+.. ..++++
T Consensus 322 ~L~~~-g~~~~~~~~--g~~~~~~~~------~~~~~~~l~~~l~~~~gi~v~~g~~f~~--------------~~~~~i 378 (404)
T 2o1b_A 322 MLAKA-DLPFVHAKG--GIYVWLETP------PGYDSEQFEQFLVQEKSILVAPGKPFGE--------------NGNRYV 378 (404)
T ss_dssp HHHHT-TCCEECCCB--SSEEEEECC------TTCCHHHHHHHHHHHHCEECEESGGGCG--------------GGTTEE
T ss_pred HHHhc-CCeecCCCc--ceEEEEeCC------CCCCHHHHHHHHHHHCCEEEeCchhhCc--------------CCCCeE
Confidence 99887 777655443 556888886 2446678888876546999977655421 235799
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
|++++. ++++++++++.|++++++.
T Consensus 379 Ris~~~--~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 379 RISLAL--DDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp EEECCS--CTTHHHHHHHHHHGGGGGG
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHHhh
Confidence 999986 7889999999999887653
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=246.88 Aligned_cols=348 Identities=13% Similarity=0.122 Sum_probs=241.5
Q ss_pred CCCeEEeccCCCCC---CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCCCCCcEEEecChhH
Q 012991 37 QHGVARINNGSFGS---CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NADDVGEISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~~---~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~i~~t~g~t~ 109 (452)
.++++.|..+.+.+ .++.+.+++.+.+... +.....|....+..++++++++++ |.+++++|++|+|+++
T Consensus 75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~---~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~ 151 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKY---ADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQ 151 (448)
T ss_dssp TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHS---HHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHH
T ss_pred CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhh---hHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHH
Confidence 46789998776542 5667888888776541 111223433445677888888888 8732689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK 189 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 189 (452)
|+.+++.++ +++||+|+++.|.|++....+ +..|.+++.++. +.++..+++|+++++.......
T Consensus 152 al~~~~~~l--------~~~Gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~----~~~g~d~~~L~~~l~~~~~~~~ 215 (448)
T 3aow_A 152 ALDLIGRVF--------LNPGDIVVVEAPTYLAALQAF----NFYEPQYIQIPL----DDEGMKVEILEEKLKELKSQGK 215 (448)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEE----ETTEECHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH--------cCCCCEEEEeCCChHHHHHHH----HHcCCEEEEecc----CCCCCCHHHHHHHHhhhhccCC
Confidence 999999987 478999999999999876654 446999999864 2233228899988851000024
Q ss_pred ceEEE-EEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----cccc---cccCccEEEEcCcccCcCC
Q 012991 190 MIRLA-IIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDV---KEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv-~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~---~~~~~d~~~~s~~K~l~g~ 258 (452)
++++| ++++++||||.++|. ++|.++|++||+ ++|+|++++.+.. ..++ ...+.++++.|++|++ +
T Consensus 216 ~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~-~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~-~- 292 (448)
T 3aow_A 216 KVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDF-IVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKIL-A- 292 (448)
T ss_dssp CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTT-C-
T ss_pred CCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCC-EEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhc-c-
Confidence 78997 578999999999874 588999999999 8999999986432 1122 2224578899999974 5
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + ... ...+..+.+...+.++..+++... +...++.++++++++++++.+
T Consensus 293 ~GlriG~v~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~q~a~~~~L~~~~-~~~~~~~~~~~~~~~~~~l~~ 358 (448)
T 3aow_A 293 PGFRIGWMVGDPGIIRK-M-EIA-----------KQSTDLCTNVFGQVVAWRYVDGGY-LEKHIPEIRKFYKPRRDAMLE 358 (448)
T ss_dssp GGGCCEEEEECHHHHHH-H-HHH-----------HHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccEEEEEeCHHHHHH-H-HHH-----------HHHhcCCCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 56 7999998877765 1 111 000111223334433333443210 011366777788889999999
Q ss_pred HHHHH-c-CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 337 MLANA-W-GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 337 ~L~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.|.+. + ++.+..|.. +.++|+.++ .+.+..++.+.|.++ ||.+.++..+... ...++
T Consensus 359 ~L~~~~~~g~~~~~p~~--g~~~~v~~~------~~~~~~~l~~~l~~~-gV~v~pg~~f~~~------------~~~~~ 417 (448)
T 3aow_A 359 ALEEFMPEGVKWTKPEG--GMFIWVTLP------DGIDSKKMLERAIKK-GVAYVPGEAFYAH------------RDVKN 417 (448)
T ss_dssp HHHHHCCTTCEECCCSB--SSEEEEECS------TTCCHHHHHHHHHHT-TEECEEGGGGSTT------------CCCCS
T ss_pred HHHHhCCCCeEEeCCCc--cEEEEEEcC------CCCCHHHHHHHHHHC-CcEEEcchhhcCC------------CCCCC
Confidence 99874 5 566655544 678899887 345677899999876 9999876554221 12357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++|+|++. .++++|+.++++|++++++
T Consensus 418 ~iRls~~~-~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 418 TMRLNFTY-VDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp EEEEECSS-SCTHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 99999986 3899999999999998865
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=246.52 Aligned_cols=333 Identities=16% Similarity=0.124 Sum_probs=233.8
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t 108 (452)
.+..++.|+.+.+. ..|+.+.+++.+.+.. + ....|.......++++++++++ |++ +++ +|++|+|++
T Consensus 23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~----~-~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~ 97 (376)
T 2dou_A 23 RGVGLIDLSIGSTDLPPPEAPLKALAEALND----P-TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQ 97 (376)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHTTC----G-GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHHHHHHhC----C-CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence 46778999887765 3567788888876532 1 1112333346778888888887 874 345 999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+|+.+++.++ .++||+|++++++|++....+ ...|.+++.++. ++...+ ++++++.++
T Consensus 98 ~a~~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~----~~~~~~d~~~l~~~l~----- 156 (376)
T 2dou_A 98 EGLAHLLLAL--------TEPEDLLLLPEVAYPSYFGAA----RVASLRTFLIPL----REDGLADLKAVPEGVW----- 156 (376)
T ss_dssp HHHHHHHHHH--------CCTTCEEEEESSCCHHHHHHH----HHTTCEEEEECB----CTTSSBCGGGSCHHHH-----
T ss_pred HHHHHHHHHh--------cCCCCEEEECCCCcHhHHHHH----HHcCCEEEEeeC----CCCCCCCHHHHHHhhc-----
Confidence 9999999987 478999999999999876554 446999999854 111112 677888773
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---c---ccc-cccCccEEEEcCcccCcC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---K---IDV-KEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~---~~~-~~~~~d~~~~s~~K~l~g 257 (452)
+++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. + ++. ...+.++++.|++|+ +|
T Consensus 157 -~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~ 233 (376)
T 2dou_A 157 -REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGL-WLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKS-YN 233 (376)
T ss_dssp -HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHH-HT
T ss_pred -cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCC-EEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhh-cC
Confidence 57899999999999999987 5678899999999 7999999986432 1 122 122457889999997 55
Q ss_pred CCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 258 ~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
++| +|+++.++++++. + ... ...+..+.+...+.++.++++.... .++..+++++++++++.
T Consensus 234 ~~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~ 297 (376)
T 2dou_A 234 LAGFRLGFALGSEEALAR-L-ERV-----------KGVIDFNQYAGVLRMGVEALKTPKE---VVRGYARVYRERALGMA 297 (376)
T ss_dssp CGGGCCEEEEECHHHHHH-H-HHH-----------HHHHCCCSCHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHH
T ss_pred ChhheeEEEecCHHHHHH-H-HHH-----------HHhcccCCCHHHHHHHHHHHhCcHH---HHHHHHHHHHHHHHHHH
Confidence 455 7999988877764 1 111 0111122333344444444433111 46677888888899999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.+. +.+..+.. +.++++.++ .+.+..++.+.|.++ ||.+..+..+.. ..+++
T Consensus 298 ~~L~~~--~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~g~~f~~--------------~~~~~ 352 (376)
T 2dou_A 298 EALKGV--LSLLPPRA--TMYLWGRLP------EGVDDLEFGLRLVER-GVALAPGRGFGP--------------GGKGF 352 (376)
T ss_dssp HHHTTT--SEECCCCB--SSEEEEECC------TTCCHHHHHHHHHHT-TEECEEGGGGCG--------------GGTTE
T ss_pred HHHHHh--cCccCCCe--eEEEEEECC------CCCCHHHHHHHHHHC-CEEEcCchhhCC--------------CCCCe
Confidence 988775 55544433 567888886 244667899999876 999987655421 23579
Q ss_pred EEecccccCCHHHHHHHHHHHHHHH
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+|++++. +++++++++++|++++
T Consensus 353 ~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 353 VRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp EEEECCS--CHHHHHHHHHHHHHTC
T ss_pred EEEEecC--CHHHHHHHHHHHHHHh
Confidence 9999985 7899999999998764
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=245.18 Aligned_cols=343 Identities=11% Similarity=0.051 Sum_probs=239.5
Q ss_pred CHHHHHhh----hccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC-----
Q 012991 25 SEAEIRDE----FSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----- 94 (452)
Q Consensus 25 ~~~~ir~~----~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----- 94 (452)
+++.+|.. |...++.++.|+.+... +.|+.+.+++.+.+... ...|+ . .. .++++.++++++
T Consensus 6 ~~~~~~~~g~~~~d~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~----~~~y~--~-~~-~~lr~~la~~~~~~~~~ 77 (377)
T 3fdb_A 6 SIEDLRARNTMKWTRYGQGVLPLWVAESDFSTCPAVLQAITDAVQRE----AFGYQ--P-DG-SLLSQATAEFYADRYGY 77 (377)
T ss_dssp CHHHHHHTCCHHHHSSCTTSEECCSSCCCSCCCHHHHHHHHHHHHTT----CCSSC--C-SS-CCHHHHHHHHHHHHHCC
T ss_pred hHHHhcCCCCceeeccCCCeeeecccCCCCCCCHHHHHHHHHHHHcC----CCCCC--C-CC-HHHHHHHHHHHHHHhCC
Confidence 35555554 33467889999887655 56788999998877531 11121 1 22 556666666665
Q ss_pred -CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 95 -ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 95 -~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
++ ++++++|+|+|+|+..++.++ .++||+|+++.++|++....+ ...|.+++.++.. .+ +
T Consensus 78 ~~~-~~~i~~t~g~~~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~----~~--~ 138 (377)
T 3fdb_A 78 QAR-PEWIFPIPDVVRGLYIAIDHF--------TPAQSKVIVPTPAYPPFFHLL----SATQREGIFIDAT----GG--I 138 (377)
T ss_dssp CCC-GGGEEEESCHHHHHHHHHHHH--------SCTTCCEEEEESCCTHHHHHH----HHHTCCEEEEECT----TS--C
T ss_pred CCC-HHHEEEeCChHHHHHHHHHHh--------cCCCCEEEEcCCCcHhHHHHH----HHcCCEEEEccCC----CC--C
Confidence 54 689999999999999999987 478999999999999876655 4459999999653 22 4
Q ss_pred -HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc-----cccccc---
Q 012991 174 -INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKE--- 241 (452)
Q Consensus 174 -~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~--- 241 (452)
+++|+++++ +++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.... ..++..
T Consensus 139 d~~~l~~~l~------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~ 211 (377)
T 3fdb_A 139 NLHDVEKGFQ------AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDA-RVLVDEIHAPLVFDGQHTVAAGVSDTA 211 (377)
T ss_dssp CHHHHHHHHH------TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-EEEEECTTGGGBSSSCCCCGGGSCHHH
T ss_pred CHHHHHHHhc------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEcccchhhcCCCCCcccHHHccC
Confidence 899999994 46889999999999999986 5567777999999 8999999876322 222221
Q ss_pred cCccEEEEcCcccCcCCCC--cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhc
Q 012991 242 IGADFYVSNLHKWFFCPPS--VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEG 318 (452)
Q Consensus 242 ~~~d~~~~s~~K~l~g~~G--~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 318 (452)
.+.++++.|++|+ +|++| +|++++ ++++++. + ... .....++++...+.++.++++...+
T Consensus 212 ~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~--- 274 (377)
T 3fdb_A 212 ASVCITITAPSKA-WNIAGLKCAQIIFSNPSDAEH-W-QQL-----------SPVIKDGASTLGLIAAEAAYRYGTD--- 274 (377)
T ss_dssp HHHEEEEECSTTT-TTCGGGCCEEEECCSHHHHHH-H-HHS-----------CHHHHCCCCHHHHHHHHHHHHHCHH---
T ss_pred CCcEEEEEeChHh-ccCcchhheEEEeCCHHHHHH-H-HHH-----------HHhhcCCCCHHHHHHHHHHHhccHH---
Confidence 2345889999997 45444 787776 4555543 1 110 0001133444444444444443222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCC
Q 012991 319 GIDGIMQRNHEQALKMARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397 (452)
Q Consensus 319 g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~ 397 (452)
.++.++++++++++++.+.|.+ ++++.+..+.. +.++++.++.. +.+ .++.+.|.+++||.+.++..+..
T Consensus 275 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~-~~~~~~l~~~~gi~v~~g~~~~~- 345 (377)
T 3fdb_A 275 FLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQA--TYLMWIDFRDT-----TIE-GSPSEFFIEKAKVAMNDGAWFGE- 345 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSB--CSEEEEECTTS-----CCC-SCHHHHHHHHHCEECEEGGGGCG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCe--eEEEEEECccc-----CCC-HHHHHHHHHhCCEEecCChhccC-
Confidence 3677888899999999999988 67787766554 55667887621 122 35666666656999987765521
Q ss_pred CCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 398 DGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++. +++++++++++|++++++
T Consensus 346 -------------~~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 346 -------------DGTGFCRLNFAT--SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp -------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHTT
T ss_pred -------------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 246799999984 899999999999998864
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=247.78 Aligned_cols=366 Identities=15% Similarity=0.165 Sum_probs=244.3
Q ss_pred CCCHHHHHhhhcc---C----CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHh
Q 012991 23 CISEAEIRDEFSH---H----QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLI 93 (452)
Q Consensus 23 ~~~~~~ir~~~~~---~----~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~ 93 (452)
.++..++.+++.. . ...+++|+ +.+....+.+.+++.+.... .++... ...+..+..+++++++++++
T Consensus 44 ~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~ 120 (474)
T 1wyu_B 44 EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFAD--LHPYQDPRTAQGALRLMWELGEYLKALT 120 (474)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSS--CCTTSCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHh--cCCCCchhhChHHHHHHHHHHHHHHHHH
Confidence 4555555555432 1 23467888 44554433466666554211 122111 13445678899999999999
Q ss_pred CCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC-----EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 012991 94 NADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND-----TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA 168 (452)
Q Consensus 94 ~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~-----~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~ 168 (452)
|.+ ..+++|+|||+|+..++.++.... .++|| +|+++.+.|+++..++ ...|.+++.++. +
T Consensus 121 g~~--~~~~~~~ggt~a~~~al~~~~~~~----~~~Gd~~~r~~Vlv~~~~h~~~~~~~----~~~G~~vv~v~~----~ 186 (474)
T 1wyu_B 121 GMD--AITLEPAAGAHGELTGILIIRAYH----EDRGEGRTRRVVLVPDSAHGSNPATA----SMAGYQVREIPS----G 186 (474)
T ss_dssp TCS--EEECCCSSHHHHHHHHHHHHHHHH----HHTTCTTTCCEEEEETTSCTHHHHHH----HHTTCEEEEECB----C
T ss_pred CCC--ceeecChHHHHHHHHHHHHHHHHH----HhcCCccCCCEEEEeCCcChhhHHHH----HHCCCEEEEecC----C
Confidence 996 356788999999988666542110 13555 9999999999987664 456999999954 3
Q ss_pred ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc-ccHHHHHHHHHHcCCCEEEEecccccCCc-cccccccCcc
Q 012991 169 SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV-IPVRKLVKICRDEGVDQVFVDAAHAMGSI-KIDVKEIGAD 245 (452)
Q Consensus 169 ~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~-~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~~~~~~~~d 245 (452)
+++.+ +++|++++ ++++++|+++++ |++|.+ .++++|+++|++||+ ++|+|++++.+.. ..+...+++|
T Consensus 187 ~~~~~d~~~L~~~i------~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~-~li~Dea~~~~~~g~~~~~~~g~d 258 (474)
T 1wyu_B 187 PEGEVDLEALKREL------GPHVAALMLTNP-NTLGLFERRILEISRLCKEAGV-QLYYDGANLNAIMGWARPGDMGFD 258 (474)
T ss_dssp TTSSBCHHHHHHHC------STTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTC-EEEEEGGGGGGTTTTCCHHHHTCS
T ss_pred CCCCcCHHHHHHhh------CCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCC-EEEEeCchhhhhccCCCcccCCCc
Confidence 44445 89999999 578999999997 579998 699999999999999 7999999976654 2333445799
Q ss_pred EEEEcCcccCcCCC-----CcEEEEEecCccccCCCCCceeccCCCCccc--------ccccccccCccccccHHHHHHH
Q 012991 246 FYVSNLHKWFFCPP-----SVAFLYCRKSILSSDMHHPVVSHEFGNGLPI--------ESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 246 ~~~~s~~K~l~g~~-----G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~al~~ 312 (452)
++++|+||++++|. |+|++++++++++. +..++... .|..... .....++.+. .++.+++.+
T Consensus 259 i~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~-l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~~~ 333 (474)
T 1wyu_B 259 VVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPY-LPVPLVER-GEEGFYLDFDRPKSIGRVRSFYGNF---LALVRAWAY 333 (474)
T ss_dssp EEECCTTTTTCCCCTTSCCCCCCEEECGGGGGG-CCSCEEEE-CSSCEEEECCCTTCCCCSSSTTSCH---HHHHHHHHH
T ss_pred EEEEeCccccccCCCCCCCCeEEEEEcHHHHHh-CCCCeeec-cCCeeEecccCcccCcccccCcCcH---HHHHHHHHH
Confidence 99999999987764 58999999988765 32122210 0100000 0011122222 334445555
Q ss_pred HHHh-hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 313 VSRF-EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 313 ~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
+... .++++.+.++..++++++.+.|.+. ++++..+... ...+++.++ .+.+..++.+.|.++ ||.++..
T Consensus 334 l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~~~------~~~~~~~l~~~L~~~-Gi~~~~~ 404 (474)
T 1wyu_B 334 IRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPS-MHEFVAQPP------EGFRALDLAKGLLEL-GFHPPTV 404 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSC-CSCEEEBCS------TTCCHHHHHHHHHHT-TCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCc-ceEEEEEcC------CCCCHHHHHHHHHHC-Ccccccc
Confidence 4422 1256667888999999999999987 7776433211 222344443 245678899999775 9987532
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+ ....+++|++++..+|.+|+++++++|++++++
T Consensus 405 ~~~---------------~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 405 YFP---------------LIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp SCS---------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred ccc---------------cccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 221 012578999999989999999999999999876
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=246.68 Aligned_cols=351 Identities=13% Similarity=0.117 Sum_probs=238.1
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t~a 110 (452)
.++++|+.+.+. ..|+.+.+++.+.+... ... |.......++++.+++++ |.+ +++ +|++|+|+++|
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~--y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~a 98 (411)
T 2o0r_A 25 IGAVNLGQGFPDEDGPPKMLQAAQDAIAGG----VNQ--YPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEA 98 (411)
T ss_dssp TTCEESSCSSCSSCCCHHHHHHHHHHHHTT----CCS--CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHH
T ss_pred CCeeeccCcCCCCCCCHHHHHHHHHHHhcC----CCC--CCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHH
Confidence 568899888765 46677999998877531 111 111222345555555554 743 356 99999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+.. +..+.+ +++|++++ .+
T Consensus 99 l~~~~~~~--------~~~gd~Vl~~~~~y~~~~~~~----~~~g~~~~~v~~~~~-~~~~~~d~~~l~~~l------~~ 159 (411)
T 2o0r_A 99 IAAAVLGL--------VEPGSEVLLIEPFYDSYSPVV----AMAGAHRVTVPLVPD-GRGFALDADALRRAV------TP 159 (411)
T ss_dssp HHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEEE-TTEEECCHHHHHHHC------CT
T ss_pred HHHHHHHh--------cCCCCEEEEeCCCcHhHHHHH----HHcCCEEEEeecccc-ccCCCCCHHHHHHhh------cc
Confidence 99999987 478999999999999976554 456999999865211 011223 89999998 56
Q ss_pred ceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~l~g~ 258 (452)
++++|++++++||||.++|. ++|+++|+++|+ ++|+|++++.+.. ..++.. .+.|+++.|++|+ +|+
T Consensus 160 ~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~-~~~ 237 (411)
T 2o0r_A 160 RTRALIINSPHNPTGAVLSATELAAIAEIAVAANL-VVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKM-FNC 237 (411)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHH-TTC
T ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhh-cCC
Confidence 89999999999999999875 789999999999 8999999986432 112221 3679999999996 666
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + ... ......+.+...+.++.++++.... .++.++++++++++++.+
T Consensus 238 ~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~~ 301 (411)
T 2o0r_A 238 TGWKIGWACGPAELIAG-V-RAA-----------KQYLSYVGGAPFQPAVALALDTEDA---WVAALRNSLRARRDRLAA 301 (411)
T ss_dssp TTTCEEEEECCHHHHHH-H-HHH-----------HHHHTSCCCTTHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeeCHHHHHH-H-HHH-----------HhhccCCCChHHHHHHHHHHhCChH---HHHHHHHHHHHHHHHHHH
Confidence 77 8999998777664 1 111 0001122333344444455543322 467788889999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.+. ++.+..+.. +.++++.++.. ...+..++.+.|.+++||.+..+..+..... .+...-.....+++
T Consensus 302 ~L~~~-g~~~~~~~~--g~~~~~~~~~~----~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~---~~~~~~~~~~~~~i 371 (411)
T 2o0r_A 302 GLTEI-GFAVHDSYG--TYFLCADPRPL----GYDDSTEFCAALPEKVGVAAIPMSAFCDPAA---GQASQQADVWNHLV 371 (411)
T ss_dssp HHHHH-TCEECCCCB--SSEEEEECGGG----TCCCHHHHHHHHHHHHSEECEEGGGGSCCC-----------CCGGGCE
T ss_pred HHHHc-CCEecCCCe--eEEEEEecCCC----CCCCHHHHHHHHHHhCCEEEcChhhhCCCcc---ccccccccCCCCeE
Confidence 99987 777665543 56888888621 0135678888876546999977654411000 00000000135799
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
|+++.. +++++++++++|+++++..
T Consensus 372 Ris~~~--~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 372 RFTFCK--RDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp EEECCS--CHHHHHHHHHHHGGGGC--
T ss_pred EEEecC--CHHHHHHHHHHHHHHHhcc
Confidence 999974 8999999999999877543
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-29 Score=247.44 Aligned_cols=354 Identities=14% Similarity=0.092 Sum_probs=239.8
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t~a 110 (452)
+++++|+.+.+. ..|+.+.+++.+.+... +.....+.......++++.+++++ |.+ +++ +|++|+|+++|
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANSP---DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTCS---CGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcc---ccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 568899888665 46677999988876431 101112222223455666666664 742 367 99999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC------CChHHH-HHHHHHHHhc
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL------ASEEEI-INEFKKGIEK 183 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~------~~~~~~-~~~l~~~i~~ 183 (452)
+.+++.++ .++||+|+++.+.|++....+ +..|.+++.++.+... ...+.+ +++|++++
T Consensus 114 ~~~~~~~~--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-- 179 (429)
T 1yiz_A 114 LYATIQGH--------VDEGDEVIIIEPFFDCYEPMV----KAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF-- 179 (429)
T ss_dssp HHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHC--
T ss_pred HHHHHHHh--------cCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeCCcccccccccccCcccCHHHHHHHh--
Confidence 99999987 478999999999999976654 4469999999763210 001223 89999988
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC------ccc-ccc-ccCccEEEEcCc
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS------IKI-DVK-EIGADFYVSNLH 252 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~------~~~-~~~-~~~~d~~~~s~~ 252 (452)
.+++++|++++++||||.++| +++|+++|++||+ ++|+|++++... .++ .+. ..+.|+++.|+|
T Consensus 180 ----~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~s 254 (429)
T 1yiz_A 180 ----NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNV-LCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAG 254 (429)
T ss_dssp ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHH
T ss_pred ----ccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCc-EEEEeccccccccCCCCCcChhhccCCcCceEEEecch
Confidence 568999999999999999996 8899999999999 899999987522 122 121 346799999999
Q ss_pred ccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH----HHhhcCHHHHHHH
Q 012991 253 KWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV----SRFEGGIDGIMQR 326 (452)
Q Consensus 253 K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----~~~~~g~~~~~~~ 326 (452)
|+ +|++| +|++++++++++. + ... ......+.+...+.++.++++.. ......+++++++
T Consensus 255 K~-~~~~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 320 (429)
T 1yiz_A 255 KT-FSLTGWKIGWAYGPEALLKN-L-QMV-----------HQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGE 320 (429)
T ss_dssp HH-HTCGGGCCEEEESCHHHHHH-H-HHH-----------HHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHH
T ss_pred hc-cCCCCcceEEEEeCHHHHHH-H-HHH-----------HhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 96 66667 8999998877664 1 111 00011233333444444455441 1002247788888
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQ 400 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~ 400 (452)
++++++++.+.|.+. ++.+..+.. +.++++.++.... .....+..++.+.|.+++||.+..+..+....
T Consensus 321 ~~~~~~~l~~~L~~~-g~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~-- 395 (429)
T 1yiz_A 321 LMAKRDYMASFLAEV-GMNPTVPQG--GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP-- 395 (429)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEECSB--SSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGG--
T ss_pred HHHHHHHHHHHHHhC-CCcccCCCc--ceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCc--
Confidence 999999999999887 777654433 6788888863100 00013567888888645699997654432100
Q ss_pred CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 401 PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 401 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
. . ...++++|++++. ++++|++++++|+++++
T Consensus 396 ----~--~-~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 396 ----N--K-HLGEDFVRYCFFK--KDENLQKAAEILRKWKG 427 (429)
T ss_dssp ----G--G-GGTTTEEEEECCS--CHHHHHHHHHHHHHHSC
T ss_pred ----c--c-CCCCCeEEEEecC--CHHHHHHHHHHHHHhcc
Confidence 0 0 0125799999984 89999999999998864
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=263.63 Aligned_cols=353 Identities=12% Similarity=0.092 Sum_probs=243.9
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCc----EEEecChh
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDD-FYF--NSLRKGILESRAAVKDLINADDVGE----ISLVDNAT 108 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~----i~~t~g~t 108 (452)
+..+.|..+ .++.|+.|++++.+.+.... ++|+. ++. ....+..+.+++++++++|++ .++ |++++|+
T Consensus 44 ~~~i~L~a~-e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~-~~~~~~~V~~~sGs- 120 (483)
T 1rv3_A 44 RVGLELIAS-ENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLD-PQCWGVNVQPYSGS- 120 (483)
T ss_dssp HSSEECCTT-CCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCC-TTTEEEECCCSSHH-
T ss_pred hcCeEEEcC-CCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCC-cccCceEEEECCcH-
Confidence 567888644 45778889999988765422 22322 111 233566778889999999996 443 5666555
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH----HHhcC--cEEEEEeCCCCCC-ChHHH-HHHHHHH
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY----VTRAG--GSVVEVQLPFPLA-SEEEI-INEFKKG 180 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~----a~~~g--~~v~~~~~~~~~~-~~~~~-~~~l~~~ 180 (452)
+++..++.++ +++||+|++++++|.++...+... ++..| .++..+ +.+ +++.+ +++|+++
T Consensus 121 ~an~~~~~al--------l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~----~~~~~~~~iD~d~le~~ 188 (483)
T 1rv3_A 121 PANFAVYTAL--------VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAY----KVNPDTGYIDYDRLEEN 188 (483)
T ss_dssp HHHHHHHHHH--------TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEE----CBCTTTCSBCHHHHHHH
T ss_pred HHHHHHHHHh--------cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEEC----ccccCCCcCCHHHHHHH
Confidence 8888888876 589999999999998865332100 01123 344444 223 23445 8999999
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccccccc---CccEEEEcCcccCcC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEI---GADFYVSNLHKWFFC 257 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~g 257 (452)
+++ ++|++|++ +++|++ .+.|+++|.++|+++|+ ++++|++|+.|....+.... ++|++++|+||++.|
T Consensus 189 i~~-----~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~-~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~G 260 (483)
T 1rv3_A 189 ARL-----FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGA-YLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRG 260 (483)
T ss_dssp HHH-----HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTC-EEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCC
T ss_pred Hhh-----cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCC-EEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCC
Confidence 952 57899999 888887 88999999999999999 89999999887665544433 689999999999999
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCC----cc--cc----cccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNG----LP--IE----SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~----~~--~~----~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
|.| |++++++++... . .. .|.. .. .+ ....|+++...+.++..+++..... +++.+.+++
T Consensus 261 prg-G~i~~~~~~~~~--~-~~----~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~--~~~~~~~~~ 330 (483)
T 1rv3_A 261 CRA-GMIFYRRGVRSV--D-PK----TGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP--EFKEYQRQV 330 (483)
T ss_dssp CSC-EEEEEECSBCC--------------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSH--HHHHHHHHH
T ss_pred CCc-eEEEEcchhhhh--c-cc----cCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhCh--hHHHHHHHH
Confidence 998 999999875421 0 00 0000 00 00 0113667776777777788776532 678899999
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
.++++++.+.|.+. |+++..+.. ...++++.+.. .+.+..++.+.|.+ .||.+...+.+.. .+
T Consensus 331 ~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~v~~~~-----~g~~~~~~~~~L~~-~gI~v~~~~~pg~---~~------ 393 (483)
T 1rv3_A 331 VANCRALSAALVEL-GYKIVTGGS-DNHLILVDLRS-----KGTDGGRAEKVLEA-CSIACNKNTCPGD---KS------ 393 (483)
T ss_dssp HHHHHHHHHHHHHT-TCEEGGGSC-SSSEEEEEGGG-----GTCCHHHHHHHHHH-TTEECEEECCSSC---SC------
T ss_pred HHHHHHHHHHHHhc-CCEeccCCC-CCceEEEeccC-----CCCCHHHHHHHHHh-CCcEEecCCCCCC---Cc------
Confidence 99999999999987 887765432 23466666641 13467778888865 6999873222211 00
Q ss_pred CCCCccceEEecccccCC----HHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNT----LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t----~~di~~l~~~l~~~~~~ 442 (452)
...++++|||++.++| ++|+++++++|+++++.
T Consensus 394 --~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 394 --ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp --TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred --CCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 1235799999998888 99999999999999865
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=251.29 Aligned_cols=354 Identities=10% Similarity=0.027 Sum_probs=241.3
Q ss_pred CCCeEEeccCCCC---CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC--CCCcEEEecCh
Q 012991 37 QHGVARINNGSFG---SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD--DVGEISLVDNA 107 (452)
Q Consensus 37 ~~~~~~l~~~~~~---~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~--~~~~i~~t~g~ 107 (452)
++.++.|..+.+. ..++.+.+++.+.+... +.....|.......++++.+++++ |.+ ++++|++|+|+
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~---~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~ 118 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKE---YHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGS 118 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHS---HHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhc---chhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccH
Confidence 4678899776543 35677899988877541 111112323334567777788877 831 36899999999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
++|+.+++.++ .++||+|++++++|++....+ +..|.+++.++.+ .++ + +++|++++++...
T Consensus 119 ~~al~~~~~~l--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~~~----~~~-~d~~~l~~~l~~~~~ 181 (425)
T 1vp4_A 119 QQALDLIGKLF--------LDDESYCVLDDPAYLGAINAF----RQYLANFVVVPLE----DDG-MDLNVLERKLSEFDK 181 (425)
T ss_dssp HHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTTCEEEEEEEE----TTE-ECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCCCEEEEeCCCcHHHHHHH----HHcCCEEEEeccC----CCC-CCHHHHHHHHHhhhh
Confidence 99999999987 478999999999999876554 4569999988652 223 4 7888888853100
Q ss_pred --CCCceEEE-EEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccccc---ccCccEEEEcCcc
Q 012991 187 --DGKMIRLA-IIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVK---EIGADFYVSNLHK 253 (452)
Q Consensus 187 --~~~~~~lv-~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~---~~~~d~~~~s~~K 253 (452)
++.++++| ++++++||||.++| +++|+++|+++|+ ++|+|++++.+.. ..++. ..+.++++.|++|
T Consensus 182 ~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK 260 (425)
T 1vp4_A 182 NGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDL-FIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK 260 (425)
T ss_dssp TTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTT
T ss_pred cccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEECCCccccCCCCCCcCHHHhCCCCCEEEEecccc
Confidence 01378888 58999999999987 4578899999999 7999999976432 12221 2245788999999
Q ss_pred cCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 254 WFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 254 ~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
++ | +| +|++++++++++. + ... ...+..+.+...+.++..+++... ....++.+++++++++
T Consensus 261 ~~-~-~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~ 324 (425)
T 1vp4_A 261 VL-A-PGLRIGMVAGSKEFIRK-I-VQA-----------KQSADLCSPAITHRLAARYLERYD-LLEQLKPTIELYRRKR 324 (425)
T ss_dssp TT-C-GGGCEEEEECCHHHHHH-H-HHH-----------HHHHHSSCCHHHHHHHHHHHHHSC-HHHHTHHHHHHHHHHH
T ss_pred cc-c-cccceEEEeeCHHHHHH-H-HHH-----------hhhhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence 74 5 55 6999998877664 1 111 001112233334444444444320 0113567778888899
Q ss_pred HHHHHHHHHH-c---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANA-W---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 332 ~~l~~~L~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
+++.+.|.+. + ++.+..+.. +.++++.++ .+.+..++.+.|.++ ||.+..+..+...
T Consensus 325 ~~l~~~L~~~~~~~~g~~~~~~~~--g~~~~~~~~------~~~~~~~l~~~l~~~-gi~v~~g~~f~~~---------- 385 (425)
T 1vp4_A 325 TVMLNALEEYFSDIPGVKWVKSEG--GLFIWLTLP------EGFDTWEMFEYAKRK-KVFYVPGRVFKVY---------- 385 (425)
T ss_dssp HHHHHHHHHHSTTSTTCEECCCSB--SSEEEEECC------TTCCTTTTHHHHHHH-TEECEEGGGGCTT----------
T ss_pred HHHHHHHHHhCCCCCceEEecCCc--cEEEEEEcC------CCCCHHHHHHHHHHC-CCEEECchhhcCC----------
Confidence 9999999875 4 566655543 678899886 234556788888776 9999876554221
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhcccccccc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQVCQML 449 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~~~~~~ 449 (452)
...++++|++++.. +++++++++++|+++++.....+.|
T Consensus 386 --~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~~~~~~ 424 (425)
T 1vp4_A 386 --DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYGKEKHL 424 (425)
T ss_dssp --CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhhccc
Confidence 12357999999874 8999999999999998765444443
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=242.56 Aligned_cols=335 Identities=14% Similarity=0.121 Sum_probs=233.3
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH----hCCC-CCC-cEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL----INAD-DVG-EISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~-~~~-~i~~t~g~t~a 110 (452)
.++++|+.+.+. ..|+.+.+++.+.+.. +...|. ......++++.++++ +|.+ +++ ++++|+|+++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~y~--~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 103 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHVAQ----GANQYA--PMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA 103 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHT----TCCSCC--CTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHh----hccCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHH
Confidence 568899888765 4667799999887653 111121 112244555556655 4743 367 99999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ .++||+|+++.++|++....+ +..|.+++.++.+.. ++.+ +++|++++ .+
T Consensus 104 ~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~---~~~~d~~~l~~~l------~~ 162 (386)
T 1u08_A 104 LYAAITAL--------VRNGDEVICFDPSYDSYAPAI----ALSGGIVKRMALQPP---HFRVDWQEFAALL------SE 162 (386)
T ss_dssp HHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECCTT---TCCCCHHHHHHHC------CT
T ss_pred HHHHHHHh--------CCCCCEEEEeCCCchhHHHHH----HHcCCEEEEeecCcc---cCcCCHHHHHHhh------cc
Confidence 99999987 478999999999999876544 556999999975311 1223 89999988 57
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc------cc-ccc-ccCccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI------KI-DVK-EIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~------~~-~~~-~~~~d~~~~s~~K~l~g~ 258 (452)
++++|++++++||||.++| +++|+++|++||+ ++|+|++++.... ++ .+. ..+.|+++.|+||+ +|+
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~-~~~ 240 (386)
T 1u08_A 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEI-FVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKT-YHM 240 (386)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCC-EEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHH-TTC
T ss_pred cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCc-EEEEEccccccccCCCCCcChhcccCccCcEEEEecchhh-cCC
Confidence 8999999999999999986 5788999999999 7999999976321 12 121 24678999999997 566
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + .... .....+.+...+.++.++++... ..++.++++++++++++.+
T Consensus 241 ~G~r~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l~~ 304 (386)
T 1u08_A 241 TGWKVGYCVAPAPISAE-I-RKVH-----------QYLTFSVNTPAQLALADMLRAEP---EHYLALPDFYRQKRDILVN 304 (386)
T ss_dssp GGGCCEEEECCHHHHHH-H-HHHH-----------HHHTSSCCHHHHHHHHHHHHHCT---HHHHTHHHHHHHHHHHHHH
T ss_pred cccceEEEEcCHHHHHH-H-HHHH-----------HhhccCCChHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHH
Confidence 66 8999998877664 1 1110 00012233333344444444321 1467778888899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.+. ++++..+.. +.++++.++.. ...+..++.+.|.+++||.+..+..+... ...++++
T Consensus 305 ~L~~~-g~~~~~~~~--g~~~~~~~~~~----~~~~~~~~~~~l~~~~gi~v~~g~~f~~~------------~~~~~~i 365 (386)
T 1u08_A 305 ALNES-RLEILPCEG--TYFLLVDYSAV----STLDDVEFCQWLTQEHGVAAIPLSVFCAD------------PFPHKLI 365 (386)
T ss_dssp HTTSS-SCEECCCCB--SSEEEEECTTT----CCSCHHHHHHHHHHHSCEECEEGGGGCSS------------CCCSCEE
T ss_pred HHHHC-CCeecCCCc--eEEEEEecCCC----CCCCHHHHHHHHHHhCCEEEeCchHhCCC------------CCCCCEE
Confidence 99876 777665543 67888888621 01456788888865569999766543210 1235799
Q ss_pred EecccccCCHHHHHHHHHHHHH
Q 012991 417 RISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~ 438 (452)
|++++. ++++|++++++|++
T Consensus 366 Ris~~~--~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 366 RLCFAK--KESTLLAAAERLRQ 385 (386)
T ss_dssp EEECCS--CHHHHHHHHHHHTT
T ss_pred EEEEcC--CHHHHHHHHHHHhh
Confidence 999984 89999999999864
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=241.79 Aligned_cols=337 Identities=15% Similarity=0.141 Sum_probs=230.1
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH----hCCC-CCCcEEEecChhHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL----INAD-DVGEISLVDNATTA 110 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~-~~~~i~~t~g~t~a 110 (452)
++.++.|+.+.+. +.|+.+.+++.+.+... .+.....|.......++++.++++ +|.+ ++++|++|+|+|+|
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIKELVTDY--DSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHHHHHHHS--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHHHHHhcC--CccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 3578999888765 56788999998887651 111112232233334555555555 4532 36899999999999
Q ss_pred HHHHHHHhhcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
+.+++.++ +++| |+|+++++.|++....+ +..|.+++.++++. +...+ +++|++++ .
T Consensus 112 l~~~~~~l--------~~~g~d~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~---~~~~~d~~~l~~~l------~ 170 (398)
T 3ele_A 112 LSICFRAL--------TSDAYDEFITIAPYFPEYKVFV----NAAGARLVEVPADT---EHFQIDFDALEERI------N 170 (398)
T ss_dssp HHHHHHHH--------CCSTTCEEEEESSCCTHHHHHH----HHTTCEEEEECCCT---TTSSCCHHHHHHTC------C
T ss_pred HHHHHHHH--------cCCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEecCC---cCCcCCHHHHHHHh------C
Confidence 99999987 4889 99999999999876554 45699999995421 12233 89999998 5
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHH------cCCCEEEEecccccCC-----ccccccccCccEEEEcCccc
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRD------EGVDQVFVDAAHAMGS-----IKIDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~------~~~~~~ivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K~ 254 (452)
+++++|++++++||||.++| +++|+++|++ ||+ ++|+|++|+... .+......+.++++.|+||+
T Consensus 171 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 249 (398)
T 3ele_A 171 AHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPI-FIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS 249 (398)
T ss_dssp TTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCC-EEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTT
T ss_pred cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCe-EEEEeccccccccCCCCcCChHhhcCCeEEEEehhhc
Confidence 68999999999999999998 5667789999 999 899999987532 22222334567899999997
Q ss_pred CcCCCC--cEEEEEecCcccc-CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCRKSILSS-DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 255 l~g~~G--~G~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
+|++| +|++++++++... .+....... .......+++. .+..++...+.. + ..++++++++
T Consensus 250 -~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~a~~~~l~~---~--~~~~~~~~~~ 313 (398)
T 3ele_A 250 -LSLPGERIGYVLVPDEVYDKAELYAAVCGA-------GRALGYVCAPS---LFQKMIVKCQGA---T--GDINAYKENR 313 (398)
T ss_dssp -SSCTTTCCEEEECCTTSTTHHHHHHHHHHH-------HHHTTCCCSCH---HHHHHHTTCTTC---C--CCHHHHHHHH
T ss_pred -CCCccceeEEEEEcchhhhHHHHHHHHHHH-------hhhccccCCCH---HHHHHHHHHhcC---H--HHHHHHHHHH
Confidence 45444 8999998876542 000000000 00000011111 122222222222 1 1356778889
Q ss_pred HHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
+++.+.|.++ ++.+..+.. +.++++.++ ..+..++.+.|.+ +||.+.++..+.
T Consensus 314 ~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~g~~~~---------------- 366 (398)
T 3ele_A 314 DLLYEGLTRI-GYHCFKPDG--AFYMFVKAL-------EDDSNAFCEKAKE-EDVLIVAADGFG---------------- 366 (398)
T ss_dssp HHHHHHHHHH-TCCEECCSB--SSEEEEECS-------SSCHHHHHHHHHT-TTEECEESGGGT----------------
T ss_pred HHHHHHHHHc-CCeecCCCe--eEEEEEEcC-------CCCHHHHHHHHHH-CCEEEeCccccC----------------
Confidence 9999999887 777666554 566888886 2356788888865 599998766542
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|++++ +++++|++++++|++++++
T Consensus 367 ~~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 367 CPGWVRISYC--VDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp CTTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 2479999997 5999999999999998865
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=240.70 Aligned_cols=338 Identities=13% Similarity=0.077 Sum_probs=232.2
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH-HHHHHHhHh----C--CCCCCcEEEecChhH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILE-SRAAVKDLI----N--ADDVGEISLVDNATT 109 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~----~--~~~~~~i~~t~g~t~ 109 (452)
+.+++|+.+..+ ..|+.+.+++.+.+.. ....|... ..+ +++.+++++ | ++ +++|++|+|+++
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~y~~~----~~~~lr~~la~~l~~~~g~~~~-~~~v~~t~g~~~ 98 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMH----GVFGYSRW----KNDEFLAAIAHWFSTQHYTAID-SQTVVYGPSVIY 98 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTT----CCCCCCCS----CCHHHHHHHHHHHHHHSCCCCC-GGGEEEESCHHH
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhC----CCCCCCCC----ChHHHHHHHHHHHHHhcCCCCC-HHHEEEcCCHHH
Confidence 468888877664 4667799999887642 11122221 334 556666654 6 43 689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+.. +....+ +++|+++++ .
T Consensus 99 al~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~-~~~~~~d~~~l~~~l~-----~ 160 (390)
T 1d2f_A 99 MVSELIRQW--------SETGEGVVIHTPAYDAFYKAI----EGNQRTVMPVALEKQ-ADGWFCDMGKLEAVLA-----K 160 (390)
T ss_dssp HHHHHHHHS--------SCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEECEEC-SSSEECCHHHHHHHHT-----S
T ss_pred HHHHHHHHh--------cCCCCEEEEcCCCcHHHHHHH----HHCCCEEEEeecccC-CCccccCHHHHHHHhc-----c
Confidence 999999976 478999999999999876654 446999999865311 001123 899999994 2
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccccCc---cEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEIGA---DFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~~~---d~~~~s~~K~l~g~ 258 (452)
.++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ..++..+.. |. +.|++|+ +|+
T Consensus 161 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~-~~~ 237 (390)
T 1d2f_A 161 PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGV-RVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKS-FNI 237 (390)
T ss_dssp TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTC-EEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHH-HTC
T ss_pred CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHh-hcc
Confidence 47999999999999999988 7889999999999 8999999986432 223332322 66 8999997 555
Q ss_pred CC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 259 ~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
+| +|+++++ +++++. + .... .+ ....++++...+.++.++++...+ .++.++++++++++++.
T Consensus 238 ~G~r~G~~~~~~~~~~~~-~-~~~~---~~------~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~ 303 (390)
T 1d2f_A 238 PALTGAYGIIENSSSRDA-Y-LSAL---KG------RDGLSSPSVLALTAHIAAYQQGAP---WLDALRIYLKDNLTYIA 303 (390)
T ss_dssp GGGCCEEEEECSHHHHHH-H-HHHH---HT------TSCCCSCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHH
T ss_pred cChhheEEEECCHHHHHH-H-HHHH---hh------hcccCCCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHH
Confidence 55 6999885 455543 1 1110 00 000124444444444445553222 36777888899999999
Q ss_pred HHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 336 RMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 336 ~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
+.|.+ ++++.+..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.. ..++
T Consensus 304 ~~L~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~l~~~l~~~~gi~v~~g~~f~~--------------~~~~ 362 (390)
T 1d2f_A 304 DKMNAAFPELNWQIPQS--TYLAWLDLRP-----LNIDDNALQKALIEQEKVAIMPGYTYGE--------------EGRG 362 (390)
T ss_dssp HHHHHHCSSCCCCCCSB--CSEEEEECGG-----GCCCHHHHHHHHHHTTCEECEEGGGGCG--------------GGTT
T ss_pred HHHHhhCCCCEEecCCc--cEEEEEEccc-----cCCCHHHHHHHHHHHcCEEeeCccccCC--------------CCCC
Confidence 99988 67777665543 4566788762 1146778999997446999987655421 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++|++++. ++++++.+++.|++++++
T Consensus 363 ~~Ris~~~--~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 363 FVRLNAGC--PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp EEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 99999996 688999999999998764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=246.93 Aligned_cols=344 Identities=13% Similarity=0.115 Sum_probs=236.2
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCCCCCcEEEecChhHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NADDVGEISLVDNATTAA 111 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~i~~t~g~t~a~ 111 (452)
++.+++|+.+..+ +.|+.|.+++.+.+....... ....|.......++++++++++ +++ +++|++|+|+++++
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~-~~~~y~~~~g~~~lr~~ia~~~~~g~~~~-~~~i~~t~G~~~al 145 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLATRE-GYSGYGAEQGQGALREAVASTFYGHAGRA-ADEIFISDGSKCDI 145 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSC-CCCCSTTTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHHH
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcccc-CCCCCCCCCCcHHHHHHHHHHHHcCCCCC-HHHEEEccCHHHHH
Confidence 6789999988765 577889999998876532211 1122334456788999999998 664 68999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE----------EEEEeCCCCCCChHHHHHHHHHHH
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS----------VVEVQLPFPLASEEEIINEFKKGI 181 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~----------v~~~~~~~~~~~~~~~~~~l~~~i 181 (452)
.++ .++ +++||+|++++|.|++....+.. .|.+ ++.++. +.++.+..+ +
T Consensus 146 ~~~-~~l--------~~~gd~Vl~~~p~~~~~~~~~~~----~g~~g~~~~~~~~~~~~~~~----~~~~~~~~~----~ 204 (449)
T 3qgu_A 146 ARI-QMM--------FGSKPTVAVQDPSYPVYVDTSVM----MGMTGDHNGTGFDGIEYMVC----NPDNHFFPD----L 204 (449)
T ss_dssp HHH-HHH--------HCSSSCEEEEESCCTHHHHHHHH----HTCSCCBCSSSBTTEEEEEC----CGGGTTCCC----G
T ss_pred HHH-HHH--------hCCCCEEEEcCCCChhHHHHHHH----cCCcccccccccceeEEEec----ccccCCcCC----h
Confidence 988 665 47899999999999998766644 4777 888854 222222111 1
Q ss_pred hccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSN 250 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s 250 (452)
.+ .+++++|++++++||||.+++ +++|+++|++||+ ++|+|++|+.... +..+.. .+.++++.|
T Consensus 205 ~~----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 279 (449)
T 3qgu_A 205 SK----AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGS-ILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCS 279 (449)
T ss_dssp GG----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEE
T ss_pred hH----cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCc-EEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEec
Confidence 11 257899999999999999987 6678888999999 8999999986322 222222 245789999
Q ss_pred CcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 251 LHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
++|+ +|++| +|++++++++++. ........ .. ........+.+...+.+..++++.... ...+.++++++
T Consensus 280 ~sK~-~g~~G~r~G~~~~~~~~~~~-~~~~~~~~-~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~ 351 (449)
T 3qgu_A 280 FSKY-AGFTGVRLGWTVVPKALKYA-NGEPVHAD-WN---RVMTTCFNGASNIVQAGGLACLQPEGL--KEMNAMIKFYK 351 (449)
T ss_dssp CSGG-GTCTTCCCEEEECCTTCBCT-TSCBHHHH-HH---HHHHHSCCCCCHHHHHHHHHHTSHHHH--HHHHHHHHHHH
T ss_pred chhh-cCCccceeEEEecCHHHHhh-hhhhHHHH-HH---HHhhcccCCCCHHHHHHHHHHHhhcCH--HHHHHHHHHHH
Confidence 9997 55444 8999998887752 00000000 00 000001123333344333334432111 13677888899
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++++++.+.|.++ ++++..+.. +.++++.++ +.+..++.+.|.+++||.+.++..+..
T Consensus 352 ~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~l~~~~gI~v~pg~~f~~------------ 409 (449)
T 3qgu_A 352 ENAQILKTTFTEM-GFSVYGGDD--APYIWVGFP-------GKPSWDVFAEILERCNIVTTPGSGYGP------------ 409 (449)
T ss_dssp HHHHHHHHHHHHT-TCCEEESSS--SSEEEEECT-------TSCHHHHHHHHHHHHCEECEEGGGGCG------------
T ss_pred HHHHHHHHHHHHC-CCeeeCCCC--eeEEEEECC-------CCCHHHHHHHHHHHCCEEEecchHhCC------------
Confidence 9999999999987 777665543 678888875 345678888887767999987665522
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+++||++.. ++++|++++++|+++++.
T Consensus 410 --~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 410 --AGEGFVRASAFG--SRENILEAVRRFKEAYGK 439 (449)
T ss_dssp --GGTTEEEEECCS--CHHHHHHHHHHHHHHHC-
T ss_pred --CCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 335799999754 899999999999999865
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=237.57 Aligned_cols=321 Identities=14% Similarity=0.123 Sum_probs=230.4
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
.++.+++|+.+... +.|+.+.+++.+.+.....++ .....+++++++++++++ ++++++|+|+|+|+.++
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~--------~~~~~~l~~~la~~~~~~-~~~i~~~~g~t~al~~~ 94 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYP--------DVNYRRLNKSIENYLKLK-DIGIVLGNGASEIIELS 94 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCC--------CTTCHHHHHHHHHHHTCC-SCEEEEESSHHHHHHHH
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCC--------CccHHHHHHHHHHHhCCC-cceEEEcCCHHHHHHHH
Confidence 45678999877544 567889999988776432222 234688999999999985 78999999999999998
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+.+ + |+|+++.++|++....+ ...|.+++.++++ .++.+ ++++++++ .+ +++
T Consensus 95 ~~~---------~---d~vi~~~~~~~~~~~~~----~~~g~~~~~~~~~----~~~~~~~~~l~~~l------~~-~~~ 147 (361)
T 3ftb_A 95 ISL---------F---EKILIIVPSYAEYEINA----KKHGVSVVFSYLD----ENMCIDYEDIISKI------DD-VDS 147 (361)
T ss_dssp HTT---------C---SEEEEEESCCTHHHHHH----HHTTCEEEEEECC----TTSCCCHHHHHHHT------TT-CSE
T ss_pred HHH---------c---CcEEEecCChHHHHHHH----HHcCCeEEEeecC----cccCCCHHHHHHhc------cC-CCE
Confidence 873 3 89999999999876655 4469999999653 22223 68999988 45 899
Q ss_pred EEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc--c---cc-cccCccEEEEcCcccCcCCCC--cE
Q 012991 194 AIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK--I---DV-KEIGADFYVSNLHKWFFCPPS--VA 262 (452)
Q Consensus 194 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~--~---~~-~~~~~d~~~~s~~K~l~g~~G--~G 262 (452)
|++++++||||.++| +++|+++|++||+ ++|+|++++.+... . .. ...+.++++.|++|+ +|++| +|
T Consensus 148 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~g 225 (361)
T 3ftb_A 148 VIIGNPNNPNGGLINKEKFIHVLKLAEEKKK-TIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKF-FAMPGIRFG 225 (361)
T ss_dssp EEEETTBTTTTBCCCHHHHHHHHHHHHHHTC-EEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSST-TSCGGGCCE
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHhhhcCC-EEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhh-cCCCCccee
Confidence 999999999999987 5567788889999 89999998754431 1 11 112345778899997 45444 68
Q ss_pred EEE-EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 263 FLY-CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 263 ~l~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
+++ .++++.+. + .... ...+++...+.++.++++.. +.++..+++.+++++++.+.|.++
T Consensus 226 ~~~~~~~~~~~~-~-~~~~-------------~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~ 286 (361)
T 3ftb_A 226 YGITNNKEIAAK-I-KAKQ-------------NPWNINCFAEMAAINCLKDT----NYIEESLLWIKKERKRFIEELNKI 286 (361)
T ss_dssp EEEESCHHHHHH-H-HTTS-------------CTTCSCHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEeCCHHHHHH-H-HhhC-------------CCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 877 56666554 1 1110 01234444444444444431 246778888999999999999988
Q ss_pred cCCC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc
Q 012991 342 WGTS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420 (452)
Q Consensus 342 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 420 (452)
+++. +..+. ++++++.++ ..+..++.+.|.++ ||.+..+..+.. ..++++|+++
T Consensus 287 ~~~~~~~~~~---~~~~~~~~~-------~~~~~~l~~~l~~~-gi~v~~g~~~~~--------------~~~~~iRis~ 341 (361)
T 3ftb_A 287 GFIKRVFSPH---ANFVLCRLE-------NISGEKLYDSLLKE-DIVIRRCCNFIG--------------LDDSFVRFAI 341 (361)
T ss_dssp SSEEEEECCS---SSEEEEEES-------SSCHHHHHHHHHTT-TEECEECTTSTT--------------CCTTEEEEEC
T ss_pred CCCceecCCC---CeEEEEEcC-------CCCHHHHHHHHHHC-CeEEeeCccCCC--------------CCCCEEEEEc
Confidence 7776 55443 567888886 24677899999876 999987655422 3367999999
Q ss_pred cccCCHHHHHHHHHHHHHHHh
Q 012991 421 QVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 421 ~~~~t~~di~~l~~~l~~~~~ 441 (452)
+ +.+++++++++|+++.+
T Consensus 342 ~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 342 K---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp C---CHHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHHh
Confidence 7 89999999999998865
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=245.37 Aligned_cols=355 Identities=12% Similarity=0.075 Sum_probs=237.2
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CC-CcEEEecChhH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DV-GEISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~-~~i~~t~g~t~ 109 (452)
+.+++.|+.+.+. +.|+.+.+++.+.+... .....|.......++++.+++++ |.+ ++ ++|++|+|+++
T Consensus 27 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~ 102 (422)
T 3fvs_A 27 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGD----FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYG 102 (422)
T ss_dssp TSCCEECCCSSCSSCCCHHHHHHHHHHHHSC----GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHH
T ss_pred cCCceEeCCCCCCCCCCHHHHHHHHHHHhCC----CccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHH
Confidence 4678999988866 56788999998877531 11112222223344555555555 432 24 58999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC--------CChHHH-HHHHHHH
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL--------ASEEEI-INEFKKG 180 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~--------~~~~~~-~~~l~~~ 180 (452)
|+..++.++ +++||+|+++.+.|++....+ ...|.+++.+++.... .....+ +++++++
T Consensus 103 a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~ 170 (422)
T 3fvs_A 103 ALFTAFQAL--------VDEGDEVIIIEPFFDCYEPMT----MMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGK 170 (422)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTT
T ss_pred HHHHHHHHH--------cCCCCEEEEcCCCchhhHHHH----HHcCCEEEEEecccccccccccccccCCCCCHHHHHhh
Confidence 999999987 589999999999999876554 4569999999764200 011223 8899988
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC----ccccccc----cCccEEEE
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKE----IGADFYVS 249 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~----~~~d~~~~ 249 (452)
+ .+++++|++++++||||.++| +++|+++|++||+ ++|+|++|+... ...++.. .+.++++.
T Consensus 171 ~------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 243 (422)
T 3fvs_A 171 F------TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDV-VCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG 243 (422)
T ss_dssp C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred c------CCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCc-EEEEEccchhhccCCCCCCChhhcccccCcEEEEe
Confidence 8 568999999999999999994 8889999999999 899999997532 2222222 24558889
Q ss_pred cCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH----HhhcCHHHH
Q 012991 250 NLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS----RFEGGIDGI 323 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~~~~g~~~~ 323 (452)
|++|+ +|++| +|+++++++++.. + ... ......+.+...+.++.++++... .....++.+
T Consensus 244 S~sK~-~g~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 309 (422)
T 3fvs_A 244 SAGKT-FSATGWKVGWVLGPDHIMKH-L-RTV-----------HQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQF 309 (422)
T ss_dssp EHHHH-HTCGGGCCEEEECCHHHHHH-H-HHH-----------HHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHH
T ss_pred cchhc-cCCccceEEEEEeCHHHHHH-H-HHH-----------HhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHH
Confidence 99997 55555 7999888877664 1 111 000012333344444444444310 012246788
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCcc-ccC------ChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRL-RVM------GEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
+++++++++++.+.|.++ ++.+..+.. +.++++.++... ... +.....++.+.|.+++||.+.++..+..
T Consensus 310 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~ 386 (422)
T 3fvs_A 310 PQAMQRCRDHMIRSLQSV-GLKPIIPQG--SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYS 386 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEEEBCSB--SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHc-CCeecCCCe--eeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcC
Confidence 889999999999999887 777655544 677887764200 000 0000457777766656999987665421
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.. ......+++|+|++. ++++|++++++|++++++
T Consensus 387 ~~---------~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 387 VP---------HQKHFDHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HH---------HHTTSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred Cc---------CCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 00 000235799999986 999999999999998754
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=239.55 Aligned_cols=336 Identities=10% Similarity=0.074 Sum_probs=234.2
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS 102 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~ 102 (452)
.++..+.+.+...++.+++|+.+..+ ..|+.+.+++.+.+.... .+. .....+++++++++++++ +++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~-------~y~-~~~~~~l~~~la~~~~~~-~~~v~ 80 (364)
T 1lc5_A 10 GNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIE-------RYP-DADYFHLHQALARHHQVP-ASWIL 80 (364)
T ss_dssp CCCHHHHHHHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTGGGGG-------SCC-CTTCHHHHHHHHHHHTSC-GGGEE
T ss_pred ccHHHHHHhcCCCccceEEeccccCCCCCCHHHHHHHHHHHHHhh-------cCC-CCCHHHHHHHHHHHHCcC-HHHEE
Confidence 34445555565445678899877643 356778888887654311 121 124688999999999985 68999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH--HHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI--INEFKKG 180 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~--~~~l~~~ 180 (452)
+|+|+++++.+++.++ +||+|+++.++|++....+ +..|.+++.++.. ..+.+ ++++.+.
T Consensus 81 ~~~g~~~al~~~~~~~----------~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~----~~~~~~~l~~~~~~ 142 (364)
T 1lc5_A 81 AGNGETESIFTVASGL----------KPRRAMIVTPGFAEYGRAL----AQSGCEIRRWSLR----EADGWQLTDAILEA 142 (364)
T ss_dssp EESSHHHHHHHHHHHH----------CCSEEEEEESCCTHHHHHH----HHTTCEEEEEECC----GGGTTCCCTTHHHH
T ss_pred ECCCHHHHHHHHHHHc----------CCCeEEEeCCCcHHHHHHH----HHcCCeEEEEeCC----cccccchhHHHHHh
Confidence 9999999999999854 4699999999999876554 4569999999653 11111 2434444
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccc-cccCccEEEEcCc
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDV-KEIGADFYVSNLH 252 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~-~~~~~d~~~~s~~ 252 (452)
+ ++++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. .++. ...+.++++.|+|
T Consensus 143 ~------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 215 (364)
T 1lc5_A 143 L------TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNI-NLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLT 215 (364)
T ss_dssp C------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEEST
T ss_pred c------cCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCc-EEEEECcChhhccCccchhhHhccCCCEEEEEECc
Confidence 4 467889999999999999998 8899999999999 8999999975432 1222 2346789999999
Q ss_pred ccCcCCCC--cEEEE-EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 253 KWFFCPPS--VAFLY-CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 253 K~l~g~~G--~G~l~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
|+ +|++| +|+++ .++++++. + .... ...+.+...+.++.++++.. ..++..++++++
T Consensus 216 K~-~~~~G~r~G~~~~~~~~~~~~-l-~~~~-------------~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~ 275 (364)
T 1lc5_A 216 KF-YAIPGLRLGYLVNSDDAAMAR-M-RRQQ-------------MPWSVNALAALAGEVALQDS----AWQQATWHWLRE 275 (364)
T ss_dssp TT-TTCTTTCCEEEECCCHHHHHH-H-HHHS-------------CTTCSCHHHHHHHHHGGGCH----HHHHHHHHHHHH
T ss_pred hh-hcCCccceEEEEECCHHHHHH-H-HHhC-------------CCCCCCHHHHHHHHHHHhCc----HHHHHHHHHHHH
Confidence 97 55455 69998 78777654 1 1110 01233333333333333331 146777888889
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++++.+.|.+++++.+..+ . ++++++.+++ +..++.+.|.++ ||.+..+..+..
T Consensus 276 ~~~~l~~~L~~~~~~~~~~~-~--g~~~~~~~~~--------~~~~l~~~l~~~-gi~v~~g~~~~~------------- 330 (364)
T 1lc5_A 276 EGARFYQALCQLPLLTVYPG-R--ANYLLLRCER--------EDIDLQRRLLTQ-RILIRSCANYPG------------- 330 (364)
T ss_dssp HHHHHHHHHHTSTTEEECCC-S--SSEEEEEESC--------TTCCHHHHHHTT-TEECEECTTSTT-------------
T ss_pred HHHHHHHHHhcCCCCEECCC-C--CeEEEEECCC--------cHHHHHHHHHHC-CcEEeeCcccCC-------------
Confidence 99999999988777776532 2 5677887762 234688888765 999976654421
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+++. +.+|+++++++|+++++.
T Consensus 331 -~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 331 -LDSRYYRVAIR---SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp -CCTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred -CCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 23579999986 799999999999998754
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=235.28 Aligned_cols=321 Identities=14% Similarity=0.087 Sum_probs=229.5
Q ss_pred eEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH------hCCCCCCcEEEecChhHHHH
Q 012991 40 VARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL------INADDVGEISLVDNATTAAA 112 (452)
Q Consensus 40 ~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~i~~t~g~t~a~~ 112 (452)
.++|+.+... ..|+.+.+++.+.+..... ....+..... .++++.++++ ++++ +++|++|+|+++++.
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~---~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIAT---ELNRYPERDA-VELRDELAAYITKQTGVAVT-RDNLWAANGSNEILQ 106 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGG---GTTSCCCTTC-HHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhccc---ccccCCCccH-HHHHHHHHHhhhhcccCCCC-hHhEEECCChHHHHH
Confidence 3788877654 4677799999888765311 1111211122 4677777777 4554 689999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
+++.++ .++||+|++++++|++....+ ...|.+++.++. ++++.+ ++++++++++ .++
T Consensus 107 ~~~~~l--------~~~gd~Vl~~~~~y~~~~~~~----~~~g~~~~~v~~----~~~~~~d~~~l~~~i~~-----~~~ 165 (369)
T 3cq5_A 107 QLLQAF--------GGPGRTALGFQPSYSMHPILA----KGTHTEFIAVSR----GADFRIDMDVALEEIRA-----KQP 165 (369)
T ss_dssp HHHHHH--------CSTTCEEEEEESSCTHHHHHH----HHTTCEEEEEEC----CTTSSCCHHHHHHHHHH-----HCC
T ss_pred HHHHHh--------cCCCCEEEEcCCChHHHHHHH----HHcCCEEEEecC----CcCCCCCHHHHHHHhhc-----cCC
Confidence 999987 478999999999999876554 456999999964 222233 8899998852 268
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---ccc-cccC-ccEEEEcCcccCcCCCC--cEEE
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---IDV-KEIG-ADFYVSNLHKWFFCPPS--VAFL 264 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~~~-~~~~-~d~~~~s~~K~l~g~~G--~G~l 264 (452)
++|++++++||||.+.|.+++.++|+.+++ ++|+|++|+.+... ... ...+ .++++.|+||+ +|++| +|++
T Consensus 166 ~~v~~~~~~nptG~~~~~~~l~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~ 243 (369)
T 3cq5_A 166 DIVFVTTPNNPTGDVTSLDDVERIINVAPG-IVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKA-FDFAGGRLGYF 243 (369)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHCSS-EEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSST-TSCGGGCCEEE
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-EEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHh-cCCcccceEEE
Confidence 899999999999999999999999999999 89999999876532 222 2234 56899999997 55445 6999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. +. .... ..+.+...+.++.++++.. +.++..+++++++++++.+.|.+. ++
T Consensus 244 ~~~~~~~~~-l~-~~~~-------------~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~-g~ 303 (369)
T 3cq5_A 244 VANPAFIDA-VM-LVRL-------------PYHLSALSQAAAIVALRHS----ADTLGTVEKLSVERVRVAARLEEL-GY 303 (369)
T ss_dssp EECTHHHHH-HH-TTSC-------------TTCSCHHHHHHHHHHHHTH----HHHHTHHHHHHHHHHHHHHHHHHH-TC
T ss_pred EeCHHHHHH-HH-HcCC-------------CCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 998877654 21 1100 0123333443344444431 135677888899999999999885 77
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+.. +. ++++++.++ .+..++.+.|.+ +||.+..+ ..++++|++++
T Consensus 304 ~~~~-~~--~~~~~~~~~--------~~~~~l~~~l~~-~gi~v~~~-------------------~~~~~iRis~~--- 349 (369)
T 3cq5_A 304 AVVP-SE--SNFVFFGDF--------SDQHAAWQAFLD-RGVLIRDV-------------------GIAGHLRTTIG--- 349 (369)
T ss_dssp EEEC-CS--SSEEEEECC--------SSHHHHHHHHHH-TTEECBCC-------------------SCTTEEEEECC---
T ss_pred EECC-CC--CeEEEEECC--------CCHHHHHHHHHH-CCEEEEEC-------------------CCCCeEEEEeC---
Confidence 7653 22 568888774 256678888865 59998643 01368999998
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++|+++++++|+++++.
T Consensus 350 ~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 350 VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 799999999999998754
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=246.60 Aligned_cols=351 Identities=16% Similarity=0.166 Sum_probs=240.5
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t~ 109 (452)
.+.+++.|..+.+. ..|+.+.+++.+.+... .. ..|....+..++++.+++++ |.+ ++++|++|+|+++
T Consensus 55 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~~--~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~ 129 (447)
T 3b46_A 55 QGRELINLGQGFFSYSPPQFAIKEAQKALDIP---MV--NQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANE 129 (447)
T ss_dssp TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSG---GG--GSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhCc---CC--CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHH
Confidence 35678999888654 45677888888776421 11 12222233456677777765 432 2578999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC--------CChHHH-HHHHHHH
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL--------ASEEEI-INEFKKG 180 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~--------~~~~~~-~~~l~~~ 180 (452)
|+.+++.++ +++||+|+++++.|++....+ ...|.+++.+++.... ..+..+ +++|+++
T Consensus 130 al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 197 (447)
T 3b46_A 130 GILSCLMGL--------LNAGDEVIVFEPFFDQYIPNI----ELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKA 197 (447)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTT
T ss_pred HHHHHHHHH--------cCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEeCCCccccccccccccCcccCHHHHHHh
Confidence 999999987 478999999999999876554 4569999988653110 001223 8999988
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc-----cc-cc--cccCccEEEE
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI-----KI-DV--KEIGADFYVS 249 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~-~~--~~~~~d~~~~ 249 (452)
+ .+++++|++++++||||.+++ +++|+++|++||+ ++|+|++++.... ++ .+ ...+.++++.
T Consensus 198 l------~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~ 270 (447)
T 3b46_A 198 I------TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNV-VIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVG 270 (447)
T ss_dssp C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEE
T ss_pred h------ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCc-EEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEe
Confidence 8 578999999999999999975 7789999999999 8999999875322 11 11 1236789999
Q ss_pred cCcccCcCCCC--cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHH
Q 012991 250 NLHKWFFCPPS--VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQR 326 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~ 326 (452)
|++|+ ++++| +|++++ ++++++. + ... ......+.+...+.++.++++.... ++.++.++++
T Consensus 271 S~sK~-~~~~G~riG~~~~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~ 335 (447)
T 3b46_A 271 SAGKS-FAATGWRIGWVLSLNAELLSY-A-AKA-----------HTRICFASPSPLQEACANSINDALK-IGYFEKMRQE 335 (447)
T ss_dssp EHHHH-TTCTTSCCEEEECSCHHHHHH-H-HHH-----------HHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHH
T ss_pred cCchh-cCCcchhhEEEEeCCHHHHHH-H-HHH-----------HhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHH
Confidence 99997 66666 899999 7777664 1 110 0011123344455555556665421 1247788899
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc---------cCChhhHHHHHHHHhhhcceEeeecccCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR---------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~ 397 (452)
++++++++.+.|.++ ++++..+.. +.++++.++.... .....+..++++.|.+++||.+.++..+...
T Consensus 336 ~~~~~~~l~~~L~~~-g~~~~~~~~--g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 412 (447)
T 3b46_A 336 YINKFKIFTSIFDEL-GLPYTAPEG--TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIK 412 (447)
T ss_dssp HHHHHHHHHHHHHHH-TCCEECCSB--SSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCG
T ss_pred HHHHHHHHHHHHHHC-CCeecCCCe--eEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCC
Confidence 999999999999988 777665544 6788888763100 0001356688888875569999765443210
Q ss_pred CCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 398 DGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.. .....+++|+|+.. ++++|++++++|+++
T Consensus 413 ~~---------~~~~~~~iRls~~~--~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 413 EH---------EKAAENLLRFAVCK--DDAYLENAVERLKLL 443 (447)
T ss_dssp GG---------GGGGTTEEEEECCS--CHHHHHHHHHHGGGG
T ss_pred Cc---------cCCCCCEEEEEEeC--CHHHHHHHHHHHHHH
Confidence 00 00125799999985 899999999999873
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=245.13 Aligned_cols=356 Identities=13% Similarity=0.145 Sum_probs=235.8
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCc----hhhhhhhhHHHHHHHHHHHhHhC--------CCCCCcEEE
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPD----DFYFNSLRKGILESRAAVKDLIN--------ADDVGEISL 103 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~i~~ 103 (452)
..++.|+.+......+.+.+++.+....... ++. ....|....+..++++.++++++ ++ ++++++
T Consensus 38 ~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~-~~~v~~ 116 (435)
T 3piu_A 38 NGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFD-PNHLVL 116 (435)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCC-GGGEEE
T ss_pred CCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCC-HHHEEE
Confidence 3588888876666666666666654321100 000 01224444556788899999887 43 689999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+||++|+..++.++ .++||+|+++.+.|++....+. ...|.+++.++... +....+ +++|+++++
T Consensus 117 ~~gg~~a~~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~~---~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~ 183 (435)
T 3piu_A 117 TAGATSANETFIFCL--------ADPGEAVLIPTPYYPGFDRDLK---WRTGVEIVPIHCTS--SNGFQITETALEEAYQ 183 (435)
T ss_dssp EEHHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHTT---TTTCCEEEEEECCG--GGTSCCCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHh--------cCCCCeEEECCCccccHHHHHH---HhcCCEEEEeeCCC--ccCCcCCHHHHHHHHH
Confidence 999999999999987 4789999999999998766553 14699999996531 111123 788888886
Q ss_pred ccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----cccccc-------------c
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE-------------I 242 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~-------------~ 242 (452)
+....+.++++|++++++||||.++|. ++|+++|++||+ ++|+|++|+.+.. ...... .
T Consensus 184 ~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 262 (435)
T 3piu_A 184 EAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGI-HLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVW 262 (435)
T ss_dssp HHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGCCSSSCCCCHHHHHHC-------CGG
T ss_pred HHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeccccccccCCCCCcCHHHhccccccccccCCC
Confidence 543334589999999999999999875 678888999999 7999999976322 111111 1
Q ss_pred CccEEEEcCcccCcCCCC--cEEEEEecC-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC
Q 012991 243 GADFYVSNLHKWFFCPPS--VAFLYCRKS-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG 319 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G--~G~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g 319 (452)
+.++++.|++|+ +|.+| +|+++++++ +... + ... .. .++.+.....++.++++....+...
T Consensus 263 ~~~i~i~s~sK~-~g~~G~r~G~~~~~~~~~~~~-~-~~~-----------~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (435)
T 3piu_A 263 QRVHVVYSLSKD-LGLPGFRVGAIYSNDDMVVAA-A-TKM-----------SS--FGLVSSQTQHLLSAMLSDKKLTKNY 326 (435)
T ss_dssp GGEEEEEESSSS-SCCGGGCEEEEEESCHHHHHH-H-HHH-----------GG--GSCCCHHHHHHHHHHHHCHHHHHHH
T ss_pred CCEEEEEeeecc-cCCCceeEEEEEeCCHHHHHH-H-HHH-----------hh--cCCCCHHHHHHHHHHhcChHHHHHH
Confidence 223888999997 45444 799888543 4332 1 110 00 0122223333333333321110113
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 320 IDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
.+..+++++++++++.+.|.+. ++++..+.. +.++++.++.........+..++.+.|.+++||.+.++..+..
T Consensus 327 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--- 400 (435)
T 3piu_A 327 IAENHKRLKQRQKKLVSGLQKS-GISCLNGNA--GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC--- 400 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TCEECCCCS--SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCcccCCCe--eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC---
Confidence 5667788888999999999877 777665543 5788888863211111114567888887767999987655422
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++.. ++++|++++++|++++++
T Consensus 401 -----------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 401 -----------TEPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp -----------SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 3467999999765 899999999999999865
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=240.80 Aligned_cols=331 Identities=11% Similarity=0.029 Sum_probs=224.0
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHHHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-DVGEISLVDNATTAAAI 113 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a~~~ 113 (452)
.+ .++.|+.+... +.|+.+.+++.+.+.....++.. ....++.+.+.+.+++.+|.+ ++++|++|+|+|+++.+
T Consensus 22 ~g-~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~---~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKS---AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp SS-CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCT---TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred cC-CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCC---CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 44 78899877765 46778888888765222111110 112233344444444444863 26899999999999999
Q ss_pred HHHHhhcccccCCCCC--CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 114 VLQQIGRGFTEGRFHR--NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~--g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
++.++ .++ ||+|+++.++|++....+ ...|.+++.++.. .++.+ . ++++++. ++
T Consensus 98 ~~~~~--------~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~----~~~~~~~-~l~~~~~------~~ 154 (376)
T 3ezs_A 98 FPSFV--------LFDYQNPTIAYPNPFYQIYEGAA----KFIKAKSLLMPLT----KENDFTP-SLNEKEL------QE 154 (376)
T ss_dssp HHHHH--------TTTCSSCEEEEEESCCTHHHHHH----HHTTCEEEEEECC----GGGTSCC-CCCHHHH------HH
T ss_pred HHHHH--------cCCCCCCEEEEecCCcHhHHHHH----HHcCCEEEEcccC----CCCCcch-hHHhhhc------cC
Confidence 99987 477 899999999999876554 5569999999653 22222 3 5666663 47
Q ss_pred eEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccc---------ccCccEEEEcCcccC
Q 012991 191 IRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVK---------EIGADFYVSNLHKWF 255 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~---------~~~~d~~~~s~~K~l 255 (452)
+++|++++++||||.++| +++|+++|++||+ ++|+|++|+.... +.... ..+.++++.|++|++
T Consensus 155 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 233 (376)
T 3ezs_A 155 VDLVILNSPNNPTGRTLSLEELISWVKLALKHDF-ILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS 233 (376)
T ss_dssp CSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT
T ss_pred CCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCc-EEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc
Confidence 889999999999999988 5567777999999 8999999876432 11111 346778999999974
Q ss_pred cCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 012991 256 FCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 256 ~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~ 333 (452)
|++| +|+++.++++++. + ... ......+.+...+.++.++++.. +..+..++++++++++
T Consensus 234 -g~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~ 295 (376)
T 3ezs_A 234 -SAPGLRSGFIAGDSRLLEK-Y-KAF-----------RAYLGYTSANAIQKASEAAWLDD----RHAEFFRNIYANNLKL 295 (376)
T ss_dssp -TCGGGCCEEEEECHHHHHH-H-HHH-----------HTTTCCCCCHHHHHHHHHHHHCS----HHHHHHHHHHHHHHHH
T ss_pred -CCccceeEEEeeCHHHHHH-H-HHH-----------HhhhcCCCChHHHHHHHHHHhCc----HHHHHHHHHHHHHHHH
Confidence 5444 7998888777764 1 111 00011233444444444444431 1357777788888888
Q ss_pred HHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 334 MARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 334 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
+.+.|. ++. .+. .+.++++.++ +..++.+.|.+++||.+.++..+... ...+
T Consensus 296 l~~~l~---~~~--~~~--~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~------------~~~~ 347 (376)
T 3ezs_A 296 ARKIFK---NTL--IYP--YSFYVYLPVQ---------NGENFAKTLYQNEGIITLPALYLGRN------------RIGA 347 (376)
T ss_dssp HHHHST---TCC--CCS--BSSEEEEECS---------CHHHHHHHHHHHHCCBCEEGGGGCST------------TTTT
T ss_pred HHHHhc---CCC--CCC--cceEEEEECC---------CHHHHHHHHHHhCCEEEeCcHHhCCC------------CCCC
Confidence 888776 443 333 2678888774 45678888876459999877665311 1346
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++. +++|+++++++|++++++
T Consensus 348 ~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 348 DYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp TEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 799999985 899999999999998864
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=237.29 Aligned_cols=340 Identities=13% Similarity=0.097 Sum_probs=232.1
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC--CCC-cEEEecChhHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD--DVG-EISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~-~i~~t~g~t~a~ 111 (452)
.++.++.|+.+... +.|+.+.+++.+.+.....++.. ....+..+.+.+.+.+.+|.+ +++ +|++|+|+++|+
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~---~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al 104 (396)
T 3jtx_A 28 EGMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLT---AGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREAL 104 (396)
T ss_dssp TTCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCT---TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHH
T ss_pred cCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCC---CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHH
Confidence 46789999888765 56778999988866432222211 112344444555555555742 367 999999999999
Q ss_pred HHHHHHhhcccccCCCCCC-----CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH-HH-HHHHHHHHhcc
Q 012991 112 AIVLQQIGRGFTEGRFHRN-----DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE-EI-INEFKKGIEKG 184 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g-----~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~-~~~l~~~i~~~ 184 (452)
.+++.++ .++| ++|+++.+.|++....+ ...|.+++.++++ +++ .+ +++|+++++
T Consensus 105 ~~~~~~~--------~~~g~~~~~d~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~----~~g~~~d~~~l~~~~~-- 166 (396)
T 3jtx_A 105 FSFVQTV--------LNPVSDGIKPAIVSPNPFYQIYEGAT----LLGGGEIHFANCP----APSFNPDWRSISEEVW-- 166 (396)
T ss_dssp HHHHHHH--------CCC---CCCCEEEEEESCCHHHHHHH----HHTTCEEEEEECC----TTTCCCCGGGSCHHHH--
T ss_pred HHHHHHH--------hCCCCccCCCEEEEcCCCcHhHHHHH----HHcCCEEEEeecC----CCCCccCHHHHHHhhc--
Confidence 9999987 3665 79999999999876554 5569999999752 111 22 678888884
Q ss_pred ccCCCceEEEEEeccCCCCcccccHHH---HHHHHHHcCCCEEEEecccccCCc----ccccc--------ccCccEEEE
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIPVRK---LVKICRDEGVDQVFVDAAHAMGSI----KIDVK--------EIGADFYVS 249 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~l~~---i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~--------~~~~d~~~~ 249 (452)
+++++|++++++||||.++|.++ |+++|++||+ ++|+|++|+.... +.... ..+.++++.
T Consensus 167 ----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 241 (396)
T 3jtx_A 167 ----KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGF-IIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFT 241 (396)
T ss_dssp ----HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCC-EEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEE
T ss_pred ----cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEe
Confidence 57999999999999999998665 8899999999 8999999875332 22211 145678999
Q ss_pred cCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 250 NLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
|++|. ++++| +|+++.++++++. + ... ......+.+...+.++.++++. ...++..++++
T Consensus 242 s~sK~-~~~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~ 303 (396)
T 3jtx_A 242 SLSKR-SNVPGLRSGFVAGDAELLKN-F-LLY-----------RTYHGSAMSIPVQRASIAAWDD----EQHVIDNRRLY 303 (396)
T ss_dssp ESTTT-SSCGGGCCEEEEECHHHHHH-H-HHH-----------HHHHTCCCCHHHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred ccccc-cCCcccceEEEEeCHHHHHH-H-HHH-----------HhhcccCCCHHHHHHHHHHhCC----HHHHHHHHHHH
Confidence 99995 45444 7898888777764 1 111 0111233444444444444442 12467778888
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
+++++.+.+.|.+. +.+..+.. +.++++.++ ..+..++.+.|.+++||.+.++..+.....
T Consensus 304 ~~~~~~l~~~l~~~--~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~-------- 364 (396)
T 3jtx_A 304 QEKFERVIPILQQV--FDVKLPDA--SFYIWLKVP-------DGDDLAFARNLWQKAAIQVLPGRFLARDTE-------- 364 (396)
T ss_dssp HHHHHHHHHHHTTT--SCCCCCSS--SSEEEEECT-------TSCHHHHHHHHHHHHCEECEEGGGGCCCCT--------
T ss_pred HHHHHHHHHHHHhc--CCccCCCe--eEEEEEECC-------CCCHHHHHHHHHHHCCEEEeCChHhCCccc--------
Confidence 88888888888765 33444433 678888886 245678888886556999987765532100
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
......+++|++++. +.+++++++++|++++
T Consensus 365 ~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 365 QGNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp TCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred ccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 001346799999986 8999999999998865
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=233.04 Aligned_cols=342 Identities=14% Similarity=0.066 Sum_probs=226.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.++.|+.+.+++.+.+.....+ ......++++.+++++|.+ ++++|+|||+|+.+++.++.+ .+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~--------~~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~~~~-----~~ 71 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLT--------QGKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFSE-----FS 71 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCS--------SSHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSSC-----CC
T ss_pred CCCCCHHHHHHHHHHHHcCccc--------CChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHhcc-----cC
Confidence 3567777999998876431111 1345789999999999984 899999999999999998621 05
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
++||+|+++.++|+++..++. ..|.+++.+++ +.++.+ +++|++.+ .+++++|+++++ +|.+
T Consensus 72 ~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~~----~~~~~~d~~~l~~~i------~~~~~~v~~~~~---tG~~ 134 (375)
T 2fnu_A 72 ADRNEIITTPISFVATANMLL----ESGYTPVFAGI----KNDGNIDELALEKLI------NERTKAIVSVDY---AGKS 134 (375)
T ss_dssp TTSCEEEECSSSCTHHHHHHH----HTTCEEEECCB----CTTSSBCGGGSGGGC------CTTEEEEEEECG---GGCC
T ss_pred CCCCEEEECCCccHhHHHHHH----HCCCEEEEecc----CCCCCCCHHHHHhhc------CcCceEEEEeCC---cCCc
Confidence 789999999999999877764 36999998854 322333 78888888 567899888877 8999
Q ss_pred ccHHHHHHHHHHcCCCEEEEecccccCCcccc--ccccCccEEEEcC--cccCcCCCCcEEEEEe--cCccccCCCCCce
Q 012991 207 IPVRKLVKICRDEGVDQVFVDAAHAMGSIKID--VKEIGADFYVSNL--HKWFFCPPSVAFLYCR--KSILSSDMHHPVV 280 (452)
Q Consensus 207 ~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~--~~~~~~d~~~~s~--~K~l~g~~G~G~l~~~--~~~~~~~l~~~~~ 280 (452)
.|+++|.++|++||+ ++|+|++|+.|..+.+ +..++ |+++.|+ ||+ +|+ |.|+++++ +++.+. + .+..
T Consensus 135 ~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~-~~~-g~g~~~~~~~~~~~~~-~-~~~~ 208 (375)
T 2fnu_A 135 VEVESVQKLCKKHSL-SFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKP-ITT-AEGGAVVTNDSELHEK-M-KLFR 208 (375)
T ss_dssp CCHHHHHHHHHHHTC-EEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSS-SCC-SSCEEEEESCHHHHHH-H-HHHT
T ss_pred cCHHHHHHHHHHcCC-EEEEECccccCCeECCeeccccC-CeEEEeCCCCCC-ccc-cCceEEEeCCHHHHHH-H-HHHH
Confidence 999999999999999 7999999998876433 22222 5555555 597 466 78888884 345443 1 1110
Q ss_pred eccCCCC--cccccccccccCcc-ccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc---cccc
Q 012991 281 SHEFGNG--LPIESAWIGTRDYS-AQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP---EICA 354 (452)
Q Consensus 281 ~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~ 354 (452)
. .+.. .+.. +..++..+. ....+.+++..... ++++.+.++.+++++++.+.|.+++++++..++ ....
T Consensus 209 ~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 283 (375)
T 2fnu_A 209 S--HGMLKKDFFE-GEVKSIGHNFRLNEIQSALGLSQL--KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSN 283 (375)
T ss_dssp B--TTEEESSSSC-EEESSCCCBCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCC
T ss_pred h--cCCccccccc-cccccccccCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcce
Confidence 0 0100 0000 000111111 22333334443332 278888999999999999999887777765542 1123
Q ss_pred ceEEEEcCCccccCChh-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCC----CCCCC----CCccceEEecccccCC
Q 012991 355 AMVMVGLPSRLRVMGED-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG----ARDKD----GIITGYARISHQVYNT 425 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~----~~~~~----~~~~~~iRis~~~~~t 425 (452)
.++++.++. .+. +..++.+.|.+ .||.++..+.+... .... ..... ....+++|++++.++|
T Consensus 284 ~~~~~~~~~-----~~~~~~~~l~~~L~~-~gi~v~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 284 HLYPILMHQ-----KFFTCKKLILESLHK-RGILAQVHYKPIYQ---YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp SCEEEEECG-----GGGGGHHHHHHHHHH-TTEECBCCCCCGGG---SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred EEEEEEeCc-----cccchHHHHHHHHHH-CCCCcccccccccc---chhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 455666651 123 67789999976 49999743322100 0000 00000 0113689999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
.+|+++++++|+++++.
T Consensus 355 ~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 355 LESVQNIAHSVLKTFES 371 (375)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=239.87 Aligned_cols=329 Identities=12% Similarity=0.085 Sum_probs=228.8
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+.+++|+++.....++.+.+++.+... . ....+...+..+++++++++++| + +.++++|+|||+|+.+++.+
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~-----~-~~~~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt~a~~~al~~ 78 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSS-----G-QAGPYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGTAANALCLSA 78 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTS-----S-CCCSTTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHHHHHHHHHHT
T ss_pred CceEeeccCCccCCCHHHHHHHHhhcc-----C-cccccccchHHHHHHHHHHHHhC-C-CCcEEEeCCccHHHHHHHHH
Confidence 457889888777788889999887631 1 11123345678999999999999 4 45699999999999999886
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHH--HHHHHHhc--CcEEEEEeCCCCCCChHHH-HHHHHH-HHhccc-cCCCc
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKS--IQAYVTRA--GGSVVEVQLPFPLASEEEI-INEFKK-GIEKGK-KDGKM 190 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~--~~~~a~~~--g~~v~~~~~~~~~~~~~~~-~~~l~~-~i~~~~-~~~~~ 190 (452)
+ .++||+|+++.+.|.+.... + ... |.+++.++. + ++.+ +++|++ ++++.. ..+.+
T Consensus 79 ~--------~~~gd~vi~~~~~~~~~~~~~~~----~~~~~g~~~~~v~~----~-~~~~d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 79 M--------TPPWGNIYCHPASHINNDECGAP----EFFSNGAKLMTVDG----P-AAKLDIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp S--------CCTTEEEEECTTSHHHHSSTTHH----HHHTTSCEEEECCC----G-GGCCCHHHHHHHTTSSTTCTTSCE
T ss_pred h--------cCCCCEEEEcCccchhhhhchHH----HHHhCCcEEEEecC----C-CCeEcHHHHHHHhhhcchhhccCC
Confidence 5 47899999999999876544 3 334 888888743 2 2334 899998 885310 01237
Q ss_pred eEEEEEeccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccccCC-----cccccc--ccCccEEEEcCcccCcCCCC
Q 012991 191 IRLAIIDHITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHAMGS-----IKIDVK--EIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~~g~-----~~~~~~--~~~~d~~~~s~~K~l~g~~G 260 (452)
+++|++++++| ||.++ ++++|.++|++||+ ++|+|++++.+. ...... ..++|++++|+||+ ++|.|
T Consensus 142 ~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G 218 (356)
T 1v72_A 142 PACVSITQATE-VGSIYTLDEIEAIGDVCKSSSL-GLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAA 218 (356)
T ss_dssp EEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTC-EEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSC
T ss_pred ceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCC-eEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCc
Confidence 89999999876 99955 47789999999999 799999986431 111111 13678999999998 77777
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|+++.++++++. + ... .. ..+........+...+++.+.+ +.+..+.++..++++++.+.|.+
T Consensus 219 ~g~~~~~~~~~~~-~-~~~-~~-----------~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~L~~ 282 (356)
T 1v72_A 219 EAIVLFNTSLATE-M-SYR-RK-----------RAGHLSSKMRFLSAQIDAYLTD--DLWLRNARKANAAAQRLAQGLEG 282 (356)
T ss_dssp EEEEESSGGGHHH-H-HHH-HH-----------HTTCCCSSTHHHHHHHHHHTST--THHHHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEECHHHHhh-H-HHH-hh-----------ccCchhhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhh
Confidence 7888888877764 1 111 00 0111111122222223333332 13456677788899999999987
Q ss_pred HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc
Q 012991 341 AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420 (452)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 420 (452)
++++++..+.. ++++++.++ .++.+.|.+ .||.+..+. + . ++++|+++
T Consensus 283 ~~g~~~~~~~~--~~~~~~~~~-----------~~~~~~l~~-~gi~v~~g~-~---------------~--~~~iRi~~ 330 (356)
T 1v72_A 283 LGGVEVLGGTE--ANILFCRLD-----------SAMIDALLK-AGFGFYHDR-W---------------G--PNVVRFVT 330 (356)
T ss_dssp CTTEEEESCCC--SSEEEEEEC-----------HHHHHHHHH-TTCBCBCSS-S---------------S--TTEEEEEC
T ss_pred CCCcEEccCCC--ccEEEEEcC-----------HHHHHHHHh-cCeEEeccc-c---------------C--CCeEEEEe
Confidence 66777655543 677887764 268888866 499986433 1 1 46999999
Q ss_pred cccCCHHHHHHHHHHHHHHHhc
Q 012991 421 QVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 421 ~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+..+|++|+++++++|++++++
T Consensus 331 ~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 331 SFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CTTCCHHHHHHHHHHHHHTC--
T ss_pred cCCCCHHHHHHHHHHHHHHHHh
Confidence 9889999999999999998754
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=240.45 Aligned_cols=339 Identities=15% Similarity=0.103 Sum_probs=226.8
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH--hC-CCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL--IN-ADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~-~~~~~~i~~t~g~t~a~~ 112 (452)
++.+++|+.+..+ +.|+.+.+++.+.+..... +.....|.......+++++++++ +| ++ +++|++|+|+++++.
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~y~~~~g~~~lr~~la~~l~~g~~~-~~~v~~~~G~~~al~ 109 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARLSS-PTTCRGYGPDFGLPALRQKLSEDFYRGFVD-AKEIFISDGAKVDLF 109 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTS-SSCCCCCCCTTCCHHHHHHHHHTTSTTSSC-GGGEEEESCHHHHHH
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhcccc-cccccCCCCCCCCHHHHHHHHHHHHcCCCC-HHHEEEccChHHHHH
Confidence 5689999988775 5677899999988766422 11112233345578899999999 47 54 689999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE-EEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS-VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
+++.. +++||+|++++|+|++....+ ...|.+ ++.++.+ .++.+..++ ++ .+++
T Consensus 110 ~~~~~---------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~----~~~~~~~~l----~~----~~~~ 164 (400)
T 3asa_A 110 RLLSF---------FGPNQTVAIQDPSYPAYLDIA----RLTGAKEIIALPCL----QENAFFPEF----PE----DTHI 164 (400)
T ss_dssp HHHHH---------HCSSCEEEEEESCCHHHHHHH----HHTTCSEEEEEECC----GGGTTCCCC----CT----TCCC
T ss_pred HHHHH---------cCCCCEEEECCCCcHHHHHHH----HHcCCcceEecccc----hhcCcccCh----hh----ccCc
Confidence 87653 368999999999999876554 446887 8888642 211111111 11 1568
Q ss_pred EEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccc-cC---Ccccccccc----CccEEEEcCcccCcCCCC
Q 012991 192 RLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHA-MG---SIKIDVKEI----GADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~-~g---~~~~~~~~~----~~d~~~~s~~K~l~g~~G 260 (452)
++|++++++||||.++| +++|+++|+++|+ ++|+|++++ ++ ..+.++..+ +.++++.|++|+ +|++|
T Consensus 165 ~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G 242 (400)
T 3asa_A 165 DILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEI-LILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKP-LGFAG 242 (400)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGG-GTTTT
T ss_pred cEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhh-cCCcc
Confidence 89999999999999998 4568889999999 899999998 32 222233322 235888999997 56566
Q ss_pred --cEEEEEecCccccCCC---CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYCRKSILSSDMH---HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 261 --~G~l~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
+|++++++++... .. ...... ......++.+...+.++ ...+... ..+.++++++++++++.
T Consensus 243 lriG~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~---~~~l~~~--~~~~~~~~~~~~~~~l~ 309 (400)
T 3asa_A 243 IRLGWTVIPQELTYA-DGHFVIQDWER-------FLSTTFNGASIPAQEAG---VAGLSIL--PQLEAIHYYRENSDLLR 309 (400)
T ss_dssp CCCEEEECCTTCBCT-TSCBHHHHHHH-------HHHHHCCCCCHHHHHHH---HHHHHHT--TTCHHHHHHHHHHHHHH
T ss_pred hheeEEeeChhhccc-hhhhHHHHHHH-------HhccCccCCChHHHHHH---HHHhCcH--HHHHHHHHHHHHHHHHH
Confidence 7999988877422 00 000000 00000123333333333 3333431 46778888999999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEE-cCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVG-LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
+.|.+. ++++..+.. ++++|+. ++ .+.+..++.+.|.+++||.+.++..+.. ..++
T Consensus 310 ~~L~~~-g~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~l~~~~gv~v~~g~~f~~--------------~~~~ 366 (400)
T 3asa_A 310 KALLAT-GFEVFGGEH--APYLWVKPTQ------ANISDRDLFDFFLREYHIAITPGIGFGR--------------SGSG 366 (400)
T ss_dssp HHHHHT-TCEEEECSS--SSEEEEECCC------TTCCTTTHHHHHHHHHSEECEEGGGGCG--------------GGTT
T ss_pred HHHHHC-CCeeeCCCC--ceEEEEeccC------CCCCHHHHHHHHHHhCCEEEeChhHhCC--------------CCCC
Confidence 999887 776654433 6788888 76 2334456777776556999987655421 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++|+++ +++++++++++++|+++++.
T Consensus 367 ~iRis~--~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 367 FVRFSS--LGKREDILAACERLQMAPAL 392 (400)
T ss_dssp CEEEEC--CSCHHHHHHHHHHHHC----
T ss_pred EEEEEe--eCCHHHHHHHHHHHHHHHHh
Confidence 899995 46899999999999988764
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=236.76 Aligned_cols=303 Identities=15% Similarity=0.105 Sum_probs=218.7
Q ss_pred hhhhHHHHHHHHHHHhHhC-CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 76 NSLRKGILESRAAVKDLIN-ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~-~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
+....+..++++.++++++ ++ ++++++|+|||+|+.+++.++ +++||+|+++.+.|++....+ ...
T Consensus 59 y~~~~g~~~l~~~la~~~~~~~-~~~v~~~~g~~~a~~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~----~~~ 125 (375)
T 3op7_A 59 YGWIEGSPAFKKSVSQLYTGVK-PEQILQTNGATGANLLVLYSL--------IEPGDHVISLYPTYQQLYDIP----KSL 125 (375)
T ss_dssp SCCTTCCHHHHHHHHTTSSSCC-GGGEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESSCTHHHHHH----HHT
T ss_pred CCCCCChHHHHHHHHHHhccCC-hhhEEEcCChHHHHHHHHHHh--------cCCCCEEEEeCCCchhHHHHH----HHc
Confidence 3344556889999999984 54 789999999999999999987 589999999999999876554 456
Q ss_pred CcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEeccc
Q 012991 155 GGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAH 230 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~ 230 (452)
|.+++.++++. ++...+ ++++++++ .+++++|++++++||+|.++| +++|.++|++||+ ++|+|++|
T Consensus 126 g~~~~~v~~~~--~~~~~~d~~~l~~~l------~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~-~li~De~~ 196 (375)
T 3op7_A 126 GAEVDLWQIEE--ENGWLPDLEKLRQLI------RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGA-YILSDEVY 196 (375)
T ss_dssp TCEEEEEEEEG--GGTTEECHHHHHHHC------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC-EEEEECCS
T ss_pred CCEEEEEeccc--cCCCCCCHHHHHHhh------ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEccc
Confidence 99999986521 111123 89999999 578999999999999999999 8999999999999 79999998
Q ss_pred ccCCcc---ccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCcccccc
Q 012991 231 AMGSIK---IDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLV 305 (452)
Q Consensus 231 ~~g~~~---~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (452)
+.+... .-....+.++++.|++|++ |++| +|++++++++++. + .... ..+..+.+.....+
T Consensus 197 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~v~~~~~l~~~-~-~~~~-----------~~~~~~~~~~~~~~ 262 (375)
T 3op7_A 197 RSFSELDVPSIIEVYDKGIAVNSLSKTY-SLPGIRIGWVAANHQVTDI-L-RDYR-----------DYTMICAGVFDDLV 262 (375)
T ss_dssp CCCSSSCCCCHHHHCTTEEEEEESSSSS-SCGGGCCEEEECCHHHHHH-H-TTTG-----------GGTTSCCCHHHHHH
T ss_pred ccccccCCCchhhhcCCEEEEeEChhhc-CCcccceEEEEeCHHHHHH-H-HHHH-----------hhhccCCCcHHHHH
Confidence 764332 1111234568889999974 5444 6999888777765 2 1110 00112223333333
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcc
Q 012991 306 IPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFG 385 (452)
Q Consensus 306 ~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 385 (452)
...+++.... ..+..+++.+++++.+.+.|.+.+++.+..+.. +.++++.++ ...+..++.+.|.+++|
T Consensus 263 ~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~ll~~~g 331 (375)
T 3op7_A 263 AQLALAHYQE---ILERNRHILEENLAILDQWIEEEPLVSYIRPAV--VSTSFVKIA------VDMPMEDFCLQLLQEHG 331 (375)
T ss_dssp HHHHHHTHHH---HHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSS--SSCEEEEEC------CSSCHHHHHHHHHHHHC
T ss_pred HHHHHhccHH---HHHHHHHHHHHHHHHHHHHHhhCCCceEecCCC--eEEEeEEcC------CCCCHHHHHHHHHHhCC
Confidence 3344443332 356777777888999999998877777665554 445555554 24466788888754569
Q ss_pred eEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 386 VEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 386 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
|.+.++..+ ..++++|++++. +.+++++++++|+++++.-
T Consensus 332 i~v~~g~~~----------------~~~~~iRi~~~~--~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 332 VLLVPGNRF----------------ERDGYVRLGFAC--EQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp EECEEGGGG----------------TCTTEEEECCCS--CHHHHHHHHHHHHHHHGGG
T ss_pred EEEeChhhh----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence 999776654 125799999886 5689999999999998754
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=237.93 Aligned_cols=358 Identities=11% Similarity=0.057 Sum_probs=237.3
Q ss_pred HHHhhhcc-CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCC-
Q 012991 28 EIRDEFSH-HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDV- 98 (452)
Q Consensus 28 ~ir~~~~~-~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~- 98 (452)
.+++.+.. .+.++++|+.+.+. +.|+.+.+++.+.+... ....|.......++++.++++++ ++ +
T Consensus 12 ~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~-~~ 85 (410)
T 3e2y_A 12 VWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFID-----NMNQYTRGFGHPALVKALSCLYGKIYQRQID-PN 85 (410)
T ss_dssp HHHHTTTTTTSTTSEECSSCCCCSCCCHHHHHHHHHHHTCG-----GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCC-TT
T ss_pred HHHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCc-----cccCCCCCCChHHHHHHHHHHHHHHhCCCCC-CC
Confidence 34444332 34679999998877 56788999998876421 11122222234566666666665 43 5
Q ss_pred CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCC-------CCChH
Q 012991 99 GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFP-------LASEE 171 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~-------~~~~~ 171 (452)
++|++|+|+++|+..++.++ +++||+|+++.+.|++....+ ...|.+++.+++... .+.++
T Consensus 86 ~~i~~~~g~~~a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~g~~~~~~~~ 153 (410)
T 3e2y_A 86 EEILVAVGAYGSLFNSIQGL--------VDPGDEVIIMVPFYDCYEPMV----RMAGAVPVFIPLRSKPTDGMKWTSSDW 153 (410)
T ss_dssp TSEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEECCCCSSCCBGGGE
T ss_pred CCEEEeCCcHHHHHHHHHHh--------cCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEeccccccccccccccCC
Confidence 79999999999999999987 478999999999999876554 456999999876310 01122
Q ss_pred HH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccccCCc----cccccc--
Q 012991 172 EI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE-- 241 (452)
Q Consensus 172 ~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~-- 241 (452)
.+ ++++++++ .+++++|++++++||||.++ ++++|+++|++||+ ++|+|++|+.... ..++..
T Consensus 154 ~~d~~~l~~~~------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~ 226 (410)
T 3e2y_A 154 TFDPRELESKF------SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDT-LCISDEVYEWLVYTGHTHVKIATLP 226 (410)
T ss_dssp ECCHHHHHTTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGST
T ss_pred cCCHHHHHhhc------CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCc-EEEEEhhhhhcccCCCCCCCHHHcC
Confidence 33 88999888 56899999999999999996 57889999999999 8999999875321 112222
Q ss_pred --cCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH----
Q 012991 242 --IGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV---- 313 (452)
Q Consensus 242 --~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---- 313 (452)
.+.++++.|++|+ +|++| +|+++++++++.. + ... ......+.+...+.++..+++..
T Consensus 227 ~~~~~~i~~~S~sK~-~g~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~~ 292 (410)
T 3e2y_A 227 GMWERTITIGSAGKT-FSVTGWKLGWSIGPAHLIKH-L-QTV-----------QQNSFYTCATPLQAALAEAFWIDIKRM 292 (410)
T ss_dssp TCGGGEEEEEEHHHH-SSCGGGCCEEEECCHHHHHH-H-HHH-----------HHTTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CccCeEEEEecchhh-cCCCCceEEEEEECHHHHHH-H-HHH-----------HHhhccCCChHHHHHHHHHHHhhhccc
Confidence 2345888899997 55444 7999888877764 1 111 00001233333444444444321
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc-cC----ChhhHHHHHHHHhhhcceEe
Q 012991 314 SRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR-VM----GEDDALRLRGHLRVRFGVEV 388 (452)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~l~~~L~~~~gI~v 388 (452)
.......+.++++++++++++.+.|.++ ++.+..+.. +.++++.++.... .. +..+..++.+.|.+++||.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v 369 (410)
T 3e2y_A 293 DDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDG--GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTA 369 (410)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSB--SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEEC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCc--cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEE
Confidence 0011246778888899999999999887 777655544 6777777642100 00 01123467776655569999
Q ss_pred eecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 389 PIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
.++..+..... .....+++|+|++. ++++|++++++|++
T Consensus 370 ~~g~~f~~~~~---------~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 370 IPVSAFCDSKS---------KPHFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp EEGGGGSCTTT---------HHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred eCchhhCCCCC---------CCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 87665421100 00135799999886 99999999999875
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=230.44 Aligned_cols=322 Identities=16% Similarity=0.130 Sum_probs=214.6
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.....+..+++++++++++|.+ ++++++|||+|+..++.++ +++||+|+++.++|+++...+..+++.
T Consensus 50 y~~~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~al~~l--------~~~gd~vi~~~~~~~~~~~~~~~~~~~ 118 (412)
T 2cb1_A 50 YARQKDPTAKALEERLKALEGAL---EAVVLASGQAATFAALLAL--------LRPGDEVVAAKGLFGQTIGLFGQVLSL 118 (412)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT--------CCTTCEEEEETTCCHHHHHHHHHTTTT
T ss_pred cCCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 33334567899999999999984 8999999999999999976 478999999999999988887654566
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|.+++.++ .+ +++|++++ .+++++|++++++||+|.+.|+++|+++|++||+ ++|+|++|+.+
T Consensus 119 ~g~~~~~~~----~~-----~~~l~~~i------~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~-~li~D~~~~~~ 182 (412)
T 2cb1_A 119 MGVTVRYVD----PE-----PEAVREAL------SAKTRAVFVETVANPALLVPDLEALATLAEEAGV-ALVVDNTFGAA 182 (412)
T ss_dssp TTCEEEEEC----SS-----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTC-EEEEECGGGTT
T ss_pred cCCEEEEEC----CC-----HHHHHHHh------ccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCC-EEEEECCCccc
Confidence 799999994 33 68899888 5789999999999999999999999999999999 79999999887
Q ss_pred CccccccccCccEEEEcCcccCcCCCC-cEEEEEecCcccc----CCCCCceeccCCCC--------cccccccccccCc
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS-VAFLYCRKSILSS----DMHHPVVSHEFGNG--------LPIESAWIGTRDY 300 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G-~G~l~~~~~~~~~----~l~~~~~~~~~~~~--------~~~~~~~~~~~~~ 300 (452)
.........++|++++|+||++++|.+ +|++++.++.... .+..+.. +|.. ........++.+.
T Consensus 183 ~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~r~~~~~~ 259 (412)
T 2cb1_A 183 GALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL---KGQIPWEALRARCFPERVRTLGLSL 259 (412)
T ss_dssp TTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC----------HHHHGGGHHHHHHHHHHTTT
T ss_pred cccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc---cccchhhccchHHHHHHHHHHHHHh
Confidence 322233345799999999999777665 6777765532110 0111110 1100 0000000011010
Q ss_pred c--ccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCC
Q 012991 301 S--AQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPS 363 (452)
Q Consensus 301 ~--~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~ 363 (452)
. ......+++.+..- +.++...++..++.+++.+.|.+.+++. +..|. ...++++.|.+.
T Consensus 260 ~g~~~~~~~a~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~- 336 (412)
T 2cb1_A 260 CGMALSPFNAYLLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLG- 336 (412)
T ss_dssp TCCCCCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECS-
T ss_pred cCCCCChHHhHHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeC-
Confidence 0 11112222222111 1344555666788999999999887876 32232 134778888772
Q ss_pred ccccCChhhHHHHHHHHhhhcceEeeecccCCCCC--CCCCCCCCC--------CCCCccceEEecccccCCHHHHHHHH
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD--GQPQAGARD--------KDGIITGYARISHQVYNTLEDYEKFR 433 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~iRis~~~~~t~~di~~l~ 433 (452)
+...+.+.|.+ .||.+ .+....... .+|...... +.+..++.||+|++.++++++|+++.
T Consensus 337 --------~~~~~~~~l~~-~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~ 406 (412)
T 2cb1_A 337 --------DLERASRFLGA-IRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFE 406 (412)
T ss_dssp --------SHHHHHHHHHH-CSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHH
T ss_pred --------CHHHHHHHHHh-CCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHH
Confidence 34567777755 59988 552100000 011111111 01223689999999999999999999
Q ss_pred HHHHH
Q 012991 434 DAVIL 438 (452)
Q Consensus 434 ~~l~~ 438 (452)
++|++
T Consensus 407 ~al~~ 411 (412)
T 2cb1_A 407 EALEA 411 (412)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 99874
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=232.66 Aligned_cols=284 Identities=10% Similarity=0.053 Sum_probs=202.7
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 160 (452)
..+++++++++++++ +++|++|+|+++++.+++.++ .++| |+|++++|+|++....+. ..|.+++.
T Consensus 60 ~~~lr~~la~~~~~~-~~~v~~~~G~~~ai~~~~~~~--------~~~g~d~Vl~~~p~~~~~~~~~~----~~g~~~~~ 126 (356)
T 1fg7_A 60 PKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIRAF--------CEPGKDAILYCPPTYGMYSVSAE----TIGVECRT 126 (356)
T ss_dssp CHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHHHH--------CCTTTCEEEECSSSCTHHHHHHH----HHTCEEEE
T ss_pred HHHHHHHHHHHhCCC-hHHEEEcCCHHHHHHHHHHHH--------hCCCCCEEEEeCCChHHHHHHHH----HcCCEEEE
Confidence 688999999999996 789999999999999999987 4788 999999999999766554 45999988
Q ss_pred EeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCcc-
Q 012991 161 VQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSIK- 236 (452)
Q Consensus 161 ~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~~- 236 (452)
++. ++++.+ ++++++++ + ++++|++++++||||.++|.++|.++++. +|+ ++|+|++|+.....
T Consensus 127 v~~----~~~~~~d~~~l~~~i------~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~-~li~De~~~~~~~~~ 194 (356)
T 1fg7_A 127 VPT----LDNWQLDLQGISDKL------D-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA-IVVADEAYIEFCPQA 194 (356)
T ss_dssp CCC----CTTSCCCHHHHHTSC------T-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTC-EEEEECTTGGGSGGG
T ss_pred eeC----CCCCCCCHHHHHHHh------c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCC-EEEEEccchhhcCCC
Confidence 854 222233 78888877 5 78999999999999999987665554433 899 89999999854311
Q ss_pred --ccc-cccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 237 --IDV-KEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 237 --~~~-~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
.++ ...+.++++.|++|+ +|++| +|++++++++++. + .... .. .+.+...+.+..++++
T Consensus 195 ~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~~~-l-~~~~-----------~~--~~~~~~~~~a~~~~l~ 258 (356)
T 1fg7_A 195 SLAGWLAEYPHLAILRTLSKA-FALAGLRCGFTLANEEVINL-L-MKVI-----------AP--YPLSTPVADIAAQALS 258 (356)
T ss_dssp CSGGGTTTCTTEEEEEESSST-TCCGGGCCEEEEECHHHHHH-H-HHHS-----------CS--SCSCHHHHHHHHHHTS
T ss_pred cHHHHHhhCCCEEEEecchHh-hcCchhhhEEEEeCHHHHHH-H-HHhc-----------CC--CCCCHHHHHHHHHHhc
Confidence 122 223567889999996 66666 7999998877664 1 1110 00 1233333333333332
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI- 390 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~- 390 (452)
.... ..++..+++++++++++.+.|.+++++....+.. ++++++.++ +..++.+.|.+ +||.++.
T Consensus 259 ~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~---------~~~~l~~~L~~-~gI~v~~~ 324 (356)
T 1fg7_A 259 PQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSE--TNYILARFK---------ASSAVFKSLWD-QGIILRDQ 324 (356)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCS--SSEEEEEET---------THHHHHHHHHH-TTEECEEC
T ss_pred CccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCC--CeEEEEECC---------CHHHHHHHHHH-CCEEEEEC
Confidence 2110 0157778888899999999998875432223332 678888774 45688899965 5999976
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 391 HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+..+ ..++++|++++ +.+|+++++++|+++
T Consensus 325 g~~~----------------~~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 325 NKQP----------------SLSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp TTST----------------TCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred CCCC----------------CCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 4433 12469999997 689999999999753
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=231.04 Aligned_cols=320 Identities=11% Similarity=0.070 Sum_probs=223.4
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
++.++.|+.+... +.|+.+.+++.+.+.....++. ... .+++++++++++++ ++++++|+|+|+++.+++
T Consensus 14 g~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-------~~~-~~lr~~la~~~~~~-~~~i~~t~g~~~al~~~~ 84 (350)
T 3fkd_A 14 SSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPE-------PDA-GTLRQMLAKRNSVD-NNAILVTNGPTAAFYQIA 84 (350)
T ss_dssp --CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCC-------TTC-HHHHHHHHHHTTCC-GGGEEEESHHHHHHHHHH
T ss_pred cccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCC-------CcH-HHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHH
Confidence 4678898877544 5677799988876532222221 222 68999999999985 789999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.++ . ||+|+++.++|.+....+ +..|.+++.++.. ++.+. +. .+++++|+
T Consensus 85 ~~l---------~-gd~Vi~~~p~~~~~~~~~----~~~g~~~~~v~~~---~~~~~--------~~-----~~~~~~v~ 134 (350)
T 3fkd_A 85 QAF---------R-GSRSLIAIPSFAEYEDAC----RMYEHEVCFYPSN---EDIGE--------AD-----FSNMDFCW 134 (350)
T ss_dssp HHT---------T-TCEEEEEESCCHHHHHHH----HHTTCEEEEEETT---SCGGG--------SC-----CTTCSEEE
T ss_pred HHH---------C-CCEEEEeCCCcHHHHHHH----HHcCCeEEEEecC---Ccccc--------Cc-----cCCCCEEE
Confidence 976 3 899999999999876554 4569999999641 22111 11 25788999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcC-CCEEEEecccccCCcc-----ccccccCccEEEEcCcccCcCCCC--cEEEEEe
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEG-VDQVFVDAAHAMGSIK-----IDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR 267 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~-~~~~ivD~a~~~g~~~-----~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~ 267 (452)
+++++||||.++|.++|.++++.++ . ++|+|++++..... ......+.++++.|++|+ +|++| +|+++++
T Consensus 135 i~~p~nptG~~~~~~~l~~l~~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~~G~r~G~~~~~ 212 (350)
T 3fkd_A 135 LCNPNNPDGRLLQRTEILRLLNDHPDT-TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHA-YGIPGLRIGYIVAN 212 (350)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHCTTS-EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHH-HSCGGGCCEEEECC
T ss_pred EeCCCCCcCCCCCHHHHHHHHHhCCCC-EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchh-ccCcchheEeEEeC
Confidence 9999999999999999999999987 8 79999998743321 122233556889999997 55444 7999988
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + .... ...+.+... +.++...+.....-.+.+++. .++++++.+.|.+++++.+.
T Consensus 213 ~~~~~~-~-~~~~-------------~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~ 273 (350)
T 3fkd_A 213 KDFMKR-V-AAFS-------------TPWAVNALA---IEAAKFILIHPAQFTLPIRKW-QRNTVDFITALNRLDGVEVH 273 (350)
T ss_dssp HHHHHH-H-HTTC-------------CTTCSCHHH---HHHHHHHHHCTTTTCCCHHHH-HHHHHHHHHHHHHSTTEEEC
T ss_pred HHHHHH-H-HHhC-------------CCCCCCHHH---HHHHHHHHhCHHHHHHHHHHH-HHHHHHHHHHHhcCCCcEEC
Confidence 777765 1 1110 012233333 333344444321012333443 38888999999887787764
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
.+. ++++++.++ .. +..++.+.|.+++||.+.++..+.. ..++++|+|++ +.+
T Consensus 274 ~~~---~~~~~~~~~------~~-~~~~l~~~L~~~~gi~v~~g~~f~~--------------~~~~~iRis~~---~~~ 326 (350)
T 3fkd_A 274 PSG---TTFFLLRLK------KG-TAAELKKYMLEEYNMLIRDASNFRG--------------LDESYVRITTQ---RPA 326 (350)
T ss_dssp CCS---SSEEEEEES------SS-CHHHHHHHHHHTTCEECEECTTSTT--------------CCTTEEEEECC---CHH
T ss_pred CCC---CcEEEEECC------CC-CHHHHHHHHHHHCCEEEEeCccCCC--------------CCCCEEEEEcC---CHH
Confidence 332 567788886 23 6788999997746999987665522 34679999987 899
Q ss_pred HHHHHHHHHHHHHhcc
Q 012991 428 DYEKFRDAVILLVEEG 443 (452)
Q Consensus 428 di~~l~~~l~~~~~~~ 443 (452)
++++++++|+++.++.
T Consensus 327 ~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 327 QNQLFIKALETFLEKY 342 (350)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-28 Score=239.59 Aligned_cols=346 Identities=14% Similarity=0.126 Sum_probs=230.5
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCCCCCcEEEecChhHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NADDVGEISLVDNATTA 110 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~i~~t~g~t~a 110 (452)
.++.+++|+.+.+. +.|+.|.+++.+.+.... .......|.......++++++++++ +++ +++|++|+|++++
T Consensus 54 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~-~~~i~~t~G~~~a 131 (432)
T 3ei9_A 54 PDAQVISLGIGDTTEPIPEVITSAMAKKAHELS-TIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG-DDDVFVSDGAKCD 131 (432)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTT-STTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHH
T ss_pred CCCCeEEccCCCCCCCCCHHHHHHHHHHHhccc-ccCCccCCCCCCCCHHHHHHHHHHHHccCCCC-cceEEECCChHHH
Confidence 35679999988776 678889999999876532 1122223333445677888888886 775 7899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC---------cEEEEEeCCCCCCChHHHHHHHHHHH
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG---------GSVVEVQLPFPLASEEEIINEFKKGI 181 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g---------~~v~~~~~~~~~~~~~~~~~~l~~~i 181 (452)
+.++ .++ +++||+|++++|.|+++...+... ...| .++..+++ +..+.+..+ +
T Consensus 132 l~~l-~~l--------~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----l 193 (432)
T 3ei9_A 132 ISRL-QVM--------FGSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRC----TPENGFFPD----L 193 (432)
T ss_dssp HHHH-HHH--------HCTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEEC----CGGGTTSCC----G
T ss_pred HHHH-HHH--------cCCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEecc----CcccCCcCC----h
Confidence 9875 444 479999999999999987776553 2222 35667754 222112111 2
Q ss_pred hccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---cccccc----cCccEEEEcC
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE----IGADFYVSNL 251 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~----~~~d~~~~s~ 251 (452)
++ .+++++|++++++||||.+++ +++|+++|++||+ ++|+|++|+.+.. +..+.. .+.++++.|+
T Consensus 194 ~~----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 268 (432)
T 3ei9_A 194 ST----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGS-IIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASF 268 (432)
T ss_dssp GG----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEES
T ss_pred hh----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCc-EEEEccchHhhccCCCCCChhhcCCCCCeEEEEecc
Confidence 22 367899999999999999987 4566777999999 8999999984322 222211 2456889999
Q ss_pred cccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHHHHHHHH
Q 012991 252 HKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDGIMQRNH 328 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~~~~~~~ 328 (452)
+|+ +|++| +|+++++++++.... .+.... +. .......++.+...+.+..+++.. ... ..+.++++++
T Consensus 269 SK~-~g~~G~r~G~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~ 339 (432)
T 3ei9_A 269 SNY-AGFTGVRLGWTVIPKKLLYSDG-FPVAKD-FN---RIICTCFNGASNISQAGALACLTPEGLE---AMHKVIGFYK 339 (432)
T ss_dssp HHH-HCTTTTCCEEEECCTTCBCTTS-CBHHHH-HH---HHHHHSCCCSCHHHHHHHHHHSSHHHHH---HHHHHHHHHH
T ss_pred hhc-cCCcccceEEEEEChHHhhcch-HHHHHH-HH---HHhccccCCCCHHHHHHHHHHHhcccHH---HHHHHHHHHH
Confidence 997 66555 799999888742100 000000 00 000000122333333333333321 111 3677888899
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++++++.+.|.++ ++.+..+.. +.++|+.++ +.+..++.+.|.+++||.+.++..+..
T Consensus 340 ~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~ll~~~gv~v~~g~~f~~------------ 397 (432)
T 3ei9_A 340 ENTNIIIDTFTSL-GYDVYGGKN--APYVWVHFP-------NQSSWDVFAEILEKTHVVTTPGSGFGP------------ 397 (432)
T ss_dssp HHHHHHHHHHHHT-TCCEEECSS--SSEEEEECT-------TSCHHHHHHHHHHHHCEECEEGGGGCG------------
T ss_pred HHHHHHHHHHHHC-CceecCCCc--ceEEEEECC-------CCCHHHHHHHHHHHCCEEEeCchHhCC------------
Confidence 9999999999887 777665443 678888886 345667777776666999987766532
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
...+++|+|+. +++++|++++++|++--.
T Consensus 398 --~~~~~iRis~~--~~~e~l~~~l~rl~~~~~ 426 (432)
T 3ei9_A 398 --GGEGFVRVSAF--GHRENILEACRRFKQLYK 426 (432)
T ss_dssp --GGTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred --CCCCEEEEEec--CCHHHHHHHHHHHHHHhh
Confidence 23579999985 489999999999987654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=231.77 Aligned_cols=343 Identities=15% Similarity=0.121 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCE
Q 012991 53 KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDT 132 (452)
Q Consensus 53 ~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~ 132 (452)
+.+.+++.+.+... . +.+...+...++++.++++++.+ +.++++ +||+|+.+++.++ .+++||+
T Consensus 17 ~~~~~a~~~~l~~~--~----~~~~~~~~~~~l~~~la~~~~~~--~~i~~~-sGt~al~~~l~~l-------~~~~gd~ 80 (388)
T 1b9h_A 17 DAERNGLVRALEQG--Q----WWRMGGDEVNSFEREFAAHHGAA--HALAVT-NGTHALELALQVM-------GVGPGTE 80 (388)
T ss_dssp HHHHHHHHHHHHTS--C----CBTTTCSHHHHHHHHHHHHTTCS--EEEEES-CHHHHHHHHHHHT-------TCCTTCE
T ss_pred HHHHHHHHHHHHcC--C----eeecCCHHHHHHHHHHHHHhCCC--eEEEeC-CHHHHHHHHHHHc-------CCCCcCE
Confidence 77889888876531 1 12333467899999999999985 455555 5599999999976 2478999
Q ss_pred EEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHH
Q 012991 133 VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRK 211 (452)
Q Consensus 133 Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~ 211 (452)
|+++.++|+++...+ ...|.+++.++++. +.+.+ +++|++++ .+++++|+ ++|++|.+.|+++
T Consensus 81 Vi~~~~~~~~~~~~~----~~~g~~~~~v~~~~---~~~~~d~~~l~~~i------~~~~~~v~---~~n~tG~~~~l~~ 144 (388)
T 1b9h_A 81 VIVPAFTFISSSQAA----QRLGAVTVPVDVDA---ATYNLDPEAVAAAV------TPRTKVIM---PVHMAGLMADMDA 144 (388)
T ss_dssp EEEESSSCTHHHHHH----HHTTCEEEEECBCT---TTCCBCHHHHHHHC------CTTEEEEC---CBCGGGCCCCHHH
T ss_pred EEECCCccHHHHHHH----HHcCCEEEEEecCC---CcCCCCHHHHHHhc------CcCceEEE---EeCCccCcCCHHH
Confidence 999999999987665 45699999995421 11334 89999998 56788887 7889999999999
Q ss_pred HHHHHHHcCCCEEEEecccccCCcc--ccccccC-ccEEEEcCcccCcCCCCcEEEEEecCcc---ccCCCCCceeccCC
Q 012991 212 LVKICRDEGVDQVFVDAAHAMGSIK--IDVKEIG-ADFYVSNLHKWFFCPPSVAFLYCRKSIL---SSDMHHPVVSHEFG 285 (452)
Q Consensus 212 i~~l~~~~~~~~~ivD~a~~~g~~~--~~~~~~~-~d~~~~s~~K~l~g~~G~G~l~~~~~~~---~~~l~~~~~~~~~~ 285 (452)
|.++|++||+ ++|+|++|+.|... .++..++ +++.++|.+|++.|+. .|+++.+++.+ .. + ... ..++
T Consensus 145 i~~la~~~~~-~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~-~-~~~--~~~~ 218 (388)
T 1b9h_A 145 LAKISADTGV-PLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYET-A-FLR--HSCG 218 (388)
T ss_dssp HHHHHHHHTC-CBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHH-H-HHH--TBTT
T ss_pred HHHHHHHcCC-EEEEecchhcCCccCCeecccccceEEEEccCCCcccCCC-eEEEEECCHHHHHHHH-H-HHH--HhCC
Confidence 9999999999 69999999987654 3344444 4555556679877766 48888887633 32 1 000 0111
Q ss_pred CCc-c--cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc----ccccceEE
Q 012991 286 NGL-P--IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP----EICAAMVM 358 (452)
Q Consensus 286 ~~~-~--~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~ 358 (452)
... + ......|+.......++..+...+. .++...++.+++++++.+.|.+++++.+..+. ...+++++
T Consensus 219 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
T 1b9h_A 219 RPRDDRRYFHKIAGSNMRLNEFSASVLRAQLA----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM 294 (388)
T ss_dssp CCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred CCccCccceeecccccCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEE
Confidence 100 0 0001112222122222222222222 46667788888999999999987777765432 12267888
Q ss_pred EEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC-CCCC--------CC----CCccceEEecccccC-
Q 012991 359 VGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA-GARD--------KD----GIITGYARISHQVYN- 424 (452)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~-~~~~--------~~----~~~~~~iRis~~~~~- 424 (452)
+.++.. ...+..++.+.|.+ .||.++.++.+.+....-.. .... .. ....+.+|++++..+
T Consensus 295 ~~~~~~----~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 369 (388)
T 1b9h_A 295 FRIPGL----TEERRNALVDRLVE-AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLA 369 (388)
T ss_dssp EECTTC----CHHHHHHHHHHHHH-TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGS
T ss_pred EEeCCc----CcccHHHHHHHHHH-CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCC
Confidence 988620 12367789999976 49999765543210000000 0000 00 011347999999999
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
|++||++++++|+++++.
T Consensus 370 t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 370 GEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999998753
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=236.69 Aligned_cols=348 Identities=11% Similarity=0.031 Sum_probs=218.7
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCc---hhhhhhhhHHHHHHHHHHHhHh------CCCCCCcEEEecCh
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPD---DFYFNSLRKGILESRAAVKDLI------NADDVGEISLVDNA 107 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i~~t~g~ 107 (452)
+++++.|..+.+...|. +.+++.+.+.....++. ....|....+..++|+++++++ +++ +++|++|+|+
T Consensus 30 ~~~~i~l~~g~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~ 107 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPA-MQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIE-PQNIALTNGS 107 (417)
T ss_dssp --CCEECSCCCCCCCHH-HHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCC-GGGEEEESCH
T ss_pred CCCceEecCcCCCCCCh-HHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCC-cccEEEeCCc
Confidence 46799999887776443 44444444443322221 1123555566788899999887 454 7899999999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCC-----EEEEe-CCcchhHHHHHHHHH--HhcCcEEEEEeCCCCCCC-hHHH-HHHH
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRND-----TVLML-HCAFQAVKKSIQAYV--TRAGGSVVEVQLPFPLAS-EEEI-INEF 177 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~-----~Vl~~-~~~~~s~~~~~~~~a--~~~g~~v~~~~~~~~~~~-~~~~-~~~l 177 (452)
|+|+++++.++ .++|| +|+++ .|+|++....+.... ...+..+..++ .+. ...+ ++++
T Consensus 108 t~al~~~~~~l--------~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~l 175 (417)
T 3g7q_A 108 QSAFFYLFNLF--------AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLP----EGQFKYHVDFEHL 175 (417)
T ss_dssp HHHHHHHHHHH--------SBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEG----GGEEEEECCGGGC
T ss_pred HHHHHHHHHHH--------cCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccC----CcccccccCHHHh
Confidence 99999999987 36665 89997 999988654432210 01133444442 110 1112 4555
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc-----cccccCccEEEE
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI-----DVKEIGADFYVS 249 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-----~~~~~~~d~~~~ 249 (452)
+ + .+++++|++++++||||.++| +++|+++|++||+ ++|+|++++.+.... .....+.++++.
T Consensus 176 ~--~------~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (417)
T 3g7q_A 176 H--I------GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNI-PLVIDNAYGVPFPGIIFSEARPLWNPNIILCM 246 (417)
T ss_dssp C--C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-CEEEECTTCTTTTCCBCSCCCCCCCTTEEEEE
T ss_pred c--c------ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCC-EEEEeCCCccccccccccccccCCCCCEEEEE
Confidence 5 4 578999999999999999999 7788999999999 799999997532211 112235678899
Q ss_pred cCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHH----H-HH
Q 012991 250 NLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID----G-IM 324 (452)
Q Consensus 250 s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~----~-~~ 324 (452)
|++|++.++.++|+++.++++++. + ... ...+...++...+ .++..++... .+. . ++
T Consensus 247 s~sK~~~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~---~~~~~~l~~~--~~~~~~~~~~~ 308 (417)
T 3g7q_A 247 SLSKLGLPGSRCGIIIANDKTITA-I-ANM-----------NGIISLAPGGMGP---AMMCEMIKRN--DLLRLSETVIK 308 (417)
T ss_dssp ESGGGTCTTSCCEEEECCHHHHHH-H-HHH-----------HHHHCCCCCSHHH---HHHHHHHHTT--CHHHHHHHTHH
T ss_pred echhccCCCcceEEEEeCHHHHHH-H-HHh-----------hcceeeCCCcHHH---HHHHHHHcCc--chHHHHHHHHH
Confidence 999953333348998888777764 1 111 0001112222232 2333333321 222 2 55
Q ss_pred HHHHHHHHHHHHHHHHH-cC--CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 325 QRNHEQALKMARMLANA-WG--TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 325 ~~~~~~~~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
++++++++.+.+.|.+. ++ +.+..+.. +.++|+.++. .+.+..++.+.|.+ +||.+.++..+...+.
T Consensus 309 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--g~~~~~~~~~-----~~~~~~~l~~~l~~-~gi~v~~g~~f~~~~~-- 378 (417)
T 3g7q_A 309 PFYYQRVQQTIAIIRRYLSEERCLIHKPEG--AIFLWLWFKD-----LPITTELLYQRLKA-RGVLMVPGHYFFPGLD-- 378 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTCEEECCCB--SSEEEEECTT-----CSSCHHHHHHHHHH-TTEECEEGGGGCTTBS--
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeeCCCc--ceEEEEEcCC-----CCCCHHHHHHHHHH-CCEEEECchhhCCCCc--
Confidence 66777888888888774 33 44444443 7788888862 14577889999965 5999987665422100
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+......+++|+|++. ++++|++++++|++++++
T Consensus 379 -----~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 379 -----KPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIER 412 (417)
T ss_dssp -----SCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHH
T ss_pred -----cccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 0000115799999985 899999999999998865
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=238.93 Aligned_cols=317 Identities=16% Similarity=0.155 Sum_probs=209.9
Q ss_pred hhhhHHHHHHHHHHHhHhC------CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHH
Q 012991 76 NSLRKGILESRAAVKDLIN------ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQA 149 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~------~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~ 149 (452)
|....+..++++.++++++ ++ +++|++|+|+++++..++.++. ..+||+|+++.|.|++....+.
T Consensus 130 Y~~~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~-------~~~gd~Vlv~~p~y~~~~~~~~- 200 (500)
T 3tcm_A 130 YSHSQGIHGLRDAIASGIASRDGFPAN-ADDIFLTDGASPGVHLMMQLLI-------RNEKDGILVPIPQYPLYSASIA- 200 (500)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHSSCCC-GGGEEEESSSHHHHHHHHHHHC-------CSTTEEEEEEESCCTHHHHHHH-
T ss_pred cCCCcChHHHHHHHHHHHHhhcCCCCC-cccEEEcCCHHHHHHHHHHHHc-------CCCCCEEEEeCCCcHhHHHHHH-
Confidence 4444556667777777663 43 6899999999999999999872 2689999999999998766654
Q ss_pred HHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEE
Q 012991 150 YVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVF 225 (452)
Q Consensus 150 ~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~i 225 (452)
..|.+++.++++. +....+ +++|++.+++....+.++++|++++++||||.+++. ++|+++|++||+ ++|
T Consensus 201 ---~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~-~li 274 (500)
T 3tcm_A 201 ---LHGGALVPYYLNE--STGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGL-VLL 274 (500)
T ss_dssp ---HTTCEEEEEECBT--TTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEE
T ss_pred ---HcCCEEEEEeccc--ccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCC-EEE
Confidence 4599999997532 111233 888988886432223489999999999999999885 466777999999 799
Q ss_pred EecccccCCcc-----cccc---------ccCc-cEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCC
Q 012991 226 VDAAHAMGSIK-----IDVK---------EIGA-DFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFG 285 (452)
Q Consensus 226 vD~a~~~g~~~-----~~~~---------~~~~-d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~ 285 (452)
+|++|+.+... .++. ..+. .+++.|+||+++|++| +|++++ ++++++. +. ...
T Consensus 275 ~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~-l~-~~~----- 347 (500)
T 3tcm_A 275 ADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQ-IY-KIA----- 347 (500)
T ss_dssp EECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHH-HH-HHH-----
T ss_pred EecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHH-HH-HHH-----
Confidence 99998763321 1111 1112 2566799998646555 688887 6666654 11 110
Q ss_pred CCcccccccccccCccccccHHHHHH-----------HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc
Q 012991 286 NGLPIESAWIGTRDYSAQLVIPSAVT-----------FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~al~-----------~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 354 (452)
....+++...+.++..++. +.. ..+.++++++++++++.+.|.+++|+.+..++. +
T Consensus 348 -------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g--~ 414 (500)
T 3tcm_A 348 -------SVNLCSNITGQILASLVMNPPKASDESYASYKA----EKDGILASLARRAKALEHAFNKLEGITCNEAEG--A 414 (500)
T ss_dssp -------HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCB--T
T ss_pred -------hcccCCCHHHHHHHHHHhcCccccchhHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCe--E
Confidence 0012334444444444443 222 356778888999999999999887888776654 5
Q ss_pred ceEEE--EcCCccc---cCChh-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHH
Q 012991 355 AMVMV--GLPSRLR---VMGED-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 355 ~~~~~--~~~~~~~---~~~~~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~d 428 (452)
.++|+ .+|.... ...+. +...++..+.+++||.+.++..+.. ....+++|+++. ++.++
T Consensus 415 ~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~-------------~~g~~~iRis~~--~~~e~ 479 (500)
T 3tcm_A 415 MYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ-------------VPGTWHFRCTIL--PQEDK 479 (500)
T ss_dssp TEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC-------------CTTCCBEEEESC--SCTTT
T ss_pred EEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC-------------CCCCCEEEEEEC--CCHHH
Confidence 55553 3331000 00001 1222333333446999987766532 123568999999 68899
Q ss_pred HHHHHHHHHHHHhc
Q 012991 429 YEKFRDAVILLVEE 442 (452)
Q Consensus 429 i~~l~~~l~~~~~~ 442 (452)
+++++++|++++++
T Consensus 480 i~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 480 IPAVISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=230.63 Aligned_cols=300 Identities=14% Similarity=0.167 Sum_probs=199.9
Q ss_pred HHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeC
Q 012991 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQL 163 (452)
Q Consensus 84 ~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~ 163 (452)
++++.+++++|.+ +.+++++||+|+.+++.++ +++||+|+++.++|+++...+..+++..|.+++.++.
T Consensus 2 ~l~~~la~~~g~~---~~i~~~sG~~a~~~~~~~~--------~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE---ACAATASGMGAIAASVWTF--------LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred hHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh--------cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC
Confidence 5789999999985 4555666699999999977 4789999999999999888876655678999999843
Q ss_pred CCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH-cCCCEEEEecccccCCcccccccc
Q 012991 164 PFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD-EGVDQVFVDAAHAMGSIKIDVKEI 242 (452)
Q Consensus 164 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~~ivD~a~~~g~~~~~~~~~ 242 (452)
.+ ++++++.+ .+++++|++++++||+|.+.|+++|.++|++ +|+ ++|+|++|+.|....+. ..
T Consensus 71 ----~d----~~~l~~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~-~li~D~a~~~~~~~~~~-~~ 134 (331)
T 1pff_A 71 ----AV----PGNIEKHL------KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDI-LVIVDNTFASPILTNPL-DL 134 (331)
T ss_dssp ----TS----TTHHHHTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSC-EEEEECTTTHHHHCCGG-GG
T ss_pred ----CC----HHHHHHhh------cCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCC-EEEEECCCcccccCChh-hc
Confidence 22 57788888 5689999999999999999999999999999 999 89999999887654333 35
Q ss_pred CccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC
Q 012991 243 GADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG 319 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g 319 (452)
++|+++.|+||++++|.+ .|++++++ ++++. + .+.. .+. +.++.+....+++..+++.+.
T Consensus 135 ~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~-l-~~~~---~~~-------~~~~~~~~~~~~~~~~l~~~~----- 197 (331)
T 1pff_A 135 GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKV-K-SQGI---KDI-------TGAIISPHDAWLITRGTLTLD----- 197 (331)
T ss_dssp TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHH-H-HTCC---CCC-------CCCCCCHHHHHHHHHHHHHHH-----
T ss_pred CCcEEEEECccccCCCCCceEEEEEeCcHHHHHH-H-HHHH---Hhh-------cCCCCCHHHHHHHHcCcchHH-----
Confidence 789999999998777765 68999987 76654 1 1111 000 012222222222223333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--------------CcCCCc-ccccceEEEEcCCccccCChhhHHHHHHHHhhhc
Q 012991 320 IDGIMQRNHEQALKMARMLANAWGT--------------SLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRF 384 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 384 (452)
...++..++...+.+.+.+.+.+ .+..++ ...++++.|.++ +..++.+.|.+ .
T Consensus 198 --~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~-~ 265 (331)
T 1pff_A 198 --MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD---------GLEKAKKVLDN-C 265 (331)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS---------SHHHHHHHHHT-C
T ss_pred --HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC---------CHHHHHHHHHh-C
Confidence 12333444555555555543221 111111 124678888774 44567777865 5
Q ss_pred ceEeeecccCCCCC--CCCCCCCC--------CCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 385 GVEVPIHYQAPKDD--GQPQAGAR--------DKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 385 gI~v~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
||.++......... .+|..... ...+..++++|+|++.++|++++++++++|+++
T Consensus 266 gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 266 HVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 99775331100000 01110000 011233589999999999999999999999764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=233.01 Aligned_cols=334 Identities=14% Similarity=0.091 Sum_probs=220.2
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND 131 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~ 131 (452)
++.+.+++.+.+... .+...+..+++++.++++++.+ ++++++|||+|+..++.++ .+++||
T Consensus 16 ~~~~~~a~~~~~~~~--------~~~~~~~~~~l~~~la~~~~~~---~~i~~~sgt~al~~~l~~l-------~~~~gd 77 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN--------WFILGDEDKKFEQEFADYCNVN---YCIGCGNGLDALHLILKGY-------DIGFGD 77 (373)
T ss_dssp HHHHHHHHHHHHHHT--------CCSSSHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHT-------TCCTTC
T ss_pred CHHHHHHHHHHHHCC--------CccCCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc-------CCCCcC
Confidence 345666666655431 1234567899999999999984 8999999999999999976 258899
Q ss_pred EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH
Q 012991 132 TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR 210 (452)
Q Consensus 132 ~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~ 210 (452)
+|+++.++|+++..++.. .|.+++.++.+. +.+.+ ++++++++ .+++++|+ ++|++|...|++
T Consensus 78 ~Vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~d~~~l~~~l------~~~~~~v~---~~n~~G~~~~l~ 141 (373)
T 3frk_A 78 EVIVPSNTFIATALAVSY----TGAKPIFVEPDI---RTYNIDPSLIESAI------TEKTKAII---AVHLYGQPADMD 141 (373)
T ss_dssp EEEEETTSCTHHHHHHHH----HSCEEEEECEET---TTTEECGGGTGGGC------CTTEEEEE---EECCTTCCCCHH
T ss_pred EEEECCCCcHHHHHHHHH----cCCEEEEEeccc---cccCcCHHHHHHhc------CCCCeEEE---EECCCcCcccHH
Confidence 999999999998777543 599999995421 22333 78888888 56888888 567899999999
Q ss_pred HHHHHHHHcCCCEEEEecccccCCccccccccC--ccEEEEcCc--ccCcCCCCcEEEEEecC-ccccCCCCCceeccCC
Q 012991 211 KLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG--ADFYVSNLH--KWFFCPPSVAFLYCRKS-ILSSDMHHPVVSHEFG 285 (452)
Q Consensus 211 ~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~l~g~~G~G~l~~~~~-~~~~~l~~~~~~~~~~ 285 (452)
+|.++|+++|+ ++|+|++|+.|.. ++....+ .|++++|++ |++.++...|+++.+++ +.+. + .+... ++
T Consensus 142 ~i~~l~~~~~~-~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~-~-~~~~~--~g 215 (373)
T 3frk_A 142 EIKRIAKKYNL-KLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEK-I-KALSN--YG 215 (373)
T ss_dssp HHHHHHHHHTC-EEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHH-H-HHHHB--TT
T ss_pred HHHHHHHHcCC-EEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHH-H-HHHHh--cC
Confidence 99999999999 7999999998876 5544444 799999855 98655122477777654 3332 1 11110 11
Q ss_pred CCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc-cccceEEEEcCCc
Q 012991 286 NGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE-ICAAMVMVGLPSR 364 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~ 364 (452)
..........|.+ ..+..+.+++...... +++.+.++.+++.+++.+.|.+++ +.+...+. ....+..+.+.
T Consensus 216 ~~~~~~~~~~g~~--~~~~~~~aa~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-- 288 (373)
T 3frk_A 216 SEKKYHHIYKGFN--SRLDELQAGFLRVKLK--YLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIR-- 288 (373)
T ss_dssp CSBTTBCCSCCCB--CCCCHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEE--
T ss_pred cccCCcccccccc--CCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEE--
Confidence 1100011111211 1233445555544432 678888888999999999887764 55443221 12222223322
Q ss_pred cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC----CCC------CccceEEecccccCCHHHHHHHHH
Q 012991 365 LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD----KDG------IITGYARISHQVYNTLEDYEKFRD 434 (452)
Q Consensus 365 ~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~----~~~------~~~~~iRis~~~~~t~~di~~l~~ 434 (452)
..+..++.+.|.++ ||.++.++..+. ++...... ... ...+.+|++++.++|++||+++++
T Consensus 289 -----~~~~~~l~~~L~~~-gI~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~ 359 (373)
T 3frk_A 289 -----SEKRDELQKYLNNN-GIGTLIHYPIPI---HLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVID 359 (373)
T ss_dssp -----ESSHHHHHHHHHHT-TBCCBCSCSSCG---GGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred -----eCCHHHHHHHHHHC-CCCcccCcCCcc---ccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHH
Confidence 12567899999775 999976542110 11111000 000 112689999999999999999999
Q ss_pred HHHHHHh
Q 012991 435 AVILLVE 441 (452)
Q Consensus 435 ~l~~~~~ 441 (452)
+|+++..
T Consensus 360 ~l~~~~~ 366 (373)
T 3frk_A 360 KINAWKL 366 (373)
T ss_dssp HHHTCC-
T ss_pred HHHHHhh
Confidence 9988654
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=231.18 Aligned_cols=344 Identities=13% Similarity=0.142 Sum_probs=220.9
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
+.+.+..++...-+.+.+++..+.... ....+.....+..+++++++++++|.+ +.+++++|++|+..++.++
T Consensus 27 ~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l~~~- 99 (398)
T 2rfv_A 27 LSTPIFQTSTFVFDSAEQGAARFALEE---SGYIYTRLGNPTTDALEKKLAVLERGE---AGLATASGISAITTTLLTL- 99 (398)
T ss_dssp SSCCCCCCSBCCCSSHHHHHHHC--------CCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH-
T ss_pred cCCCCcCCCccccCCHHHHHHhhcCCC---CCCceeCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH-
Confidence 444554444444444555554211111 111233335678899999999999984 6677777889999999987
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEecc
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI 199 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~ 199 (452)
+++||+|++++++|+++...+..++...|.+++.++. ++ ++++++.+ .+++++|+++++
T Consensus 100 -------~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~d----~~~l~~~i------~~~~~~v~~~~~ 158 (398)
T 2rfv_A 100 -------CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA----AK----PEEIRAAM------RPETKVVYIETP 158 (398)
T ss_dssp -------CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT----TS----HHHHHHHC------CTTEEEEEEESS
T ss_pred -------hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC----CC----HHHHHHhc------CCCCeEEEEECC
Confidence 4789999999999999888886656778999999943 32 68888888 568999999999
Q ss_pred CCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCC
Q 012991 200 TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHH 277 (452)
Q Consensus 200 ~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~ 277 (452)
+||+|.+.|+++|+++|++||+ ++|+|++++.+...... ..++|+++.|+||+++++.+ .|+++++++++.. ...
T Consensus 159 ~nptG~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~-~~~ 235 (398)
T 2rfv_A 159 ANPTLSLVDIETVAGIAHQQGA-LLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQ-ARF 235 (398)
T ss_dssp BTTTTBCCCHHHHHHHHHHTTC-EEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHH-HHH
T ss_pred CCCCCcccCHHHHHHHHHHcCC-EEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHH-HHH
Confidence 9999999999999999999999 79999999987653222 35789999999998766655 4999998877652 011
Q ss_pred CceeccCCCCccccccc-ccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-------------
Q 012991 278 PVVSHEFGNGLPIESAW-IGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG------------- 343 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~------------- 343 (452)
+.. ..+ .++.+...+.+...+++. .....++..++.+.+.+.|.+.+.
T Consensus 236 ~~~-----------~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p 297 (398)
T 2rfv_A 236 VGL-----------KDITGGCMSPFNAWLTLRGVKT-------LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHP 297 (398)
T ss_dssp THH-----------HHTTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTST
T ss_pred HHH-----------HhCCCCCCCHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc
Confidence 111 001 123333233333333322 233344456667777777766421
Q ss_pred -CCcCCCc-ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC--------CCCCcc
Q 012991 344 -TSLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD--------KDGIIT 413 (452)
Q Consensus 344 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~--------~~~~~~ 413 (452)
+++..++ ...+++++|.++. ...+...+.+.+.. .|+.+..+..+.-- .+|...... ..+..+
T Consensus 298 ~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~l~~~~~~-~~i~~~~G~~~~li-~~~~~~~~~~~~~~~~~~~g~~~ 370 (398)
T 2rfv_A 298 QYELGQRQMSLPGGIISFEIAG-----GLEAGRRMINSVEL-CLLAVSLGDTETLI-QHPASMTHSPVAPEERLKAGITD 370 (398)
T ss_dssp THHHHHHHCSSCCSEEEEEETT-----HHHHHHHHHTTCSS-SEECSCCSSSSCEE-ECHHHHTSSSSCHHHHHHTTCCT
T ss_pred cHHHHHhhCCCCceEEEEEEcC-----CHHHHHHHHHhCCc-ceeccCCCCcceee-ecccccccccCCHHHHHhcCCCC
Confidence 1111111 1247888888861 11234445555433 37766544211000 000000000 002236
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHH
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+.+|+|++..+++++|+++.++|+++
T Consensus 371 ~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 371 GLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999999764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=230.05 Aligned_cols=348 Identities=14% Similarity=0.062 Sum_probs=229.0
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
.+++.++.+.+... +.+.+++.+.+... .+. ...+...++++.++++++.+ ++++++|||+|+.+++.+
T Consensus 22 ~~~~~l~~~~p~~~-~~~~~a~~~~~~~~------~~~-~~~~~~~~l~~~la~~~~~~---~~i~~~~gt~al~~~l~~ 90 (391)
T 3dr4_A 22 SDLPRISVAAPRLD-GNERDYVLECMDTT------WIS-SVGRFIVEFEKAFADYCGVK---HAIACNNGTTALHLALVA 90 (391)
T ss_dssp ------CCCCCCCC-SSHHHHHHHHHHHT------CCS-SCSHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHH
T ss_pred CCCceeccCCCCCC-HHHHHHHHHHHHcC------Ccc-CCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHH
Confidence 35667776665444 55888888776531 111 13567899999999999984 889999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ .+++||+|+++.++|+++..++. ..|.+++.++++. +++.+ ++++++++ .+++++|++
T Consensus 91 ~-------~~~~gd~vl~~~~~~~~~~~~~~----~~g~~~~~~~~~~---~~~~~d~~~l~~~~------~~~~~~v~~ 150 (391)
T 3dr4_A 91 M-------GIGPGDEVIVPSLTYIASANSVT----YCGATPVLVDNDP---RTFNLDAAKLEALI------TPRTKAIMP 150 (391)
T ss_dssp H-------TCCTTCEEEEESSSCTHHHHHHH----HTTCEEEEECBCT---TTCSBCGGGSGGGC------CTTEEEECC
T ss_pred c-------CCCCcCEEEECCCchHHHHHHHH----HCCCEEEEEecCc---cccCcCHHHHHHhc------CCCceEEEE
Confidence 7 25889999999999999877664 4699999995421 22233 78888888 568888884
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccc--cccCccEEEEc--CcccCcCCCCcEEEEEecC-cc
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDV--KEIGADFYVSN--LHKWFFCPPSVAFLYCRKS-IL 271 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~--~~~~~d~~~~s--~~K~l~g~~G~G~l~~~~~-~~ 271 (452)
+|+||...|+++|.++|+++|+ ++|+|++|+.|....+. ..+ .|++++| .+|++.++. .|+++.+++ +.
T Consensus 151 ---~n~tG~~~~~~~i~~l~~~~~~-~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~-gg~~~~~~~~~~ 224 (391)
T 3dr4_A 151 ---VHLYGQICDMDPILEVARRHNL-LVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGE-GGMITTNDDDLA 224 (391)
T ss_dssp ---BCGGGCCCCHHHHHHHHHHTTC-EEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBS-CEEEEESCHHHH
T ss_pred ---ECCCCChhhHHHHHHHHHHcCC-EEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCC-eEEEEECCHHHH
Confidence 5689999999999999999999 89999999987764432 222 3566666 669976655 477777654 33
Q ss_pred ccCCCCCceeccCCCC--cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 272 SSDMHHPVVSHEFGNG--LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 272 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
+. + ..... ++.. ........+.. .....+.+++...... +++.+.++.+++.+++.+.|.++ ++.+..+
T Consensus 225 ~~-~-~~~~~--~g~~~~~~~~~~~~g~~--~~~~~l~aa~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 295 (391)
T 3dr4_A 225 AK-M-RLLRG--QGMDPNRRYWFPIVGFN--YRMTNIQAAIGLAQLE--RVDEHLAARERVVGWYEQKLARL-GNRVTKP 295 (391)
T ss_dssp HH-H-HHHHB--TTCCTTSTTCCSSCCCB--CBCCHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHGGG-TTSEECC
T ss_pred HH-H-HHHHh--cCCCCCCcccccccccc--cCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC-CccccCc
Confidence 22 1 11110 1110 00000001111 1334445555544432 78888999999999999999988 8776554
Q ss_pred --cc---cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC----CC----CCccceE
Q 012991 350 --PE---ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD----KD----GIITGYA 416 (452)
Q Consensus 350 --~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~----~~----~~~~~~i 416 (452)
+. ....++++.++.. .+.+..++.+.|.++ ||.++.++.+.+ |...... .. ......+
T Consensus 296 ~~~~~~~~~~~~~~i~~~~~----~~~~~~~l~~~L~~~-GI~v~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~l 366 (391)
T 3dr4_A 296 HVALTGRHVFWMYTVRLGEG----LSTTRDQVIKDLDAL-GIESRPVFHPMH----IMPPYAHLATDDLKIAEACGVDGL 366 (391)
T ss_dssp CCCTTSCCCCSSEEEEECSS----CSSCHHHHHHHHHHT-TCCCEECCCCGG----GSGGGGGGCCTTCHHHHHHHHHEE
T ss_pred CCCCCCcceeEEEEEEECCc----cchhHHHHHHHHHHC-CCceeecCCccc----cChhhhhcCcCCChHHHHHHhCeE
Confidence 21 2233456666521 145678899999775 999976543211 1111100 00 0124689
Q ss_pred EecccccCCHHHHHHHHHHHHHHH
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~ 440 (452)
|++++.++|++||++++++|++++
T Consensus 367 rl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 367 NLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp EECCCTTCCHHHHHHHHHHHHTTC
T ss_pred EccCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=238.48 Aligned_cols=358 Identities=11% Similarity=-0.009 Sum_probs=231.9
Q ss_pred CCCeE-EeccCCCCCCcHHHHHHHHHHHHHHhcC-------Cc---hhhhhhhhHHHHHHHHHHHhHh------CCCCCC
Q 012991 37 QHGVA-RINNGSFGSCPKSVLADQQKWQLKFLQQ-------PD---DFYFNSLRKGILESRAAVKDLI------NADDVG 99 (452)
Q Consensus 37 ~~~~~-~l~~~~~~~~p~~v~e~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~la~~~------~~~~~~ 99 (452)
.++++ +|+.+.+.. ++.+.+++.+.+.....+ +. ....|....+..++|+.+++++ +++ ++
T Consensus 30 ~~~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-~~ 107 (444)
T 3if2_A 30 SDQPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT-SE 107 (444)
T ss_dssp SSSCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC-GG
T ss_pred CchhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC-HH
Confidence 36788 999887776 444778888777766666 53 1234555556788888888887 454 78
Q ss_pred cEEEecChhHHHHHHHHHhhcccccCCCCCCC--------------EEEEe-CCcchhHHHHHHH--HHHhcCcEEEEEe
Q 012991 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRND--------------TVLML-HCAFQAVKKSIQA--YVTRAGGSVVEVQ 162 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~--------------~Vl~~-~~~~~s~~~~~~~--~a~~~g~~v~~~~ 162 (452)
+|++|+|+|+|+++++.++ .++|| +|+++ .|+|+++...+.. .....|..+..++
T Consensus 108 ~i~~t~G~t~al~~~~~~l--------~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (444)
T 3if2_A 108 NIALTNGSQNAFFYLFNLF--------GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVT 179 (444)
T ss_dssp GEEEESSHHHHHHHHHHHS--------SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEE
T ss_pred HEEEecCcHHHHHHHHHHH--------hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecc
Confidence 9999999999999999987 35666 78775 8888876432100 0123467777774
Q ss_pred CCCCCCC-h----HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccC
Q 012991 163 LPFPLAS-E----EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 163 ~~~~~~~-~----~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
+ +. + ..+ +++|++++++. ++++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+
T Consensus 180 ~----~~~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~-~li~De~~~~~ 251 (444)
T 3if2_A 180 H----DGEEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDI-PLIIDNAYGMP 251 (444)
T ss_dssp E----TTEEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-CEEEECTTCTT
T ss_pred c----ccccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCC-EEEEECCCCCc
Confidence 3 22 1 123 78888874221 578999999999999999999 7788999999999 79999999753
Q ss_pred Ccccc-----ccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 234 SIKID-----VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 234 ~~~~~-----~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
..... ....+.++++.|+||++.++.++|+++.+++++.. + ... ......+.+...+.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~ 318 (444)
T 3if2_A 252 FPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEA-V-SAM-----------NAVVNLAPTRFGAAIATP 318 (444)
T ss_dssp TTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHH-H-HHH-----------HHHHHSSCCCHHHHHHHH
T ss_pred ccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHH-H-HHH-----------HHhccCCCChHHHHHHHH
Confidence 32221 12235678999999963333447888887777664 1 111 000011222223322222
Q ss_pred HHHHHHHhhcCHH-HHHHHHHHHHHHHHHHHHHH-cC--CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhc
Q 012991 309 AVTFVSRFEGGID-GIMQRNHEQALKMARMLANA-WG--TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRF 384 (452)
Q Consensus 309 al~~~~~~~~g~~-~~~~~~~~~~~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 384 (452)
+++..... .... .++++++++++.+.+.|.+. ++ +.+..+.. +.++++.++. .+.+..++.+.|.+ +
T Consensus 319 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--g~~~~~~~~~-----~~~~~~~l~~~l~~-~ 389 (444)
T 3if2_A 319 LVANDRIK-QLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEG--AIFLWLWFKD-----LPISTLDLYERLKA-K 389 (444)
T ss_dssp HHHTSHHH-HHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCB--SSEEEEEETT-----CSSCHHHHHHHHHH-T
T ss_pred HHHcCchh-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCc--cEEEEEEcCC-----CCCCHHHHHHHHHH-C
Confidence 22211100 0112 25556677778888888764 33 33444433 6788888762 14577889999865 5
Q ss_pred ceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 385 GVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 385 gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
||.+.++..+...... . . .....+++|||++. ++++|++++++|++++++
T Consensus 390 gi~v~~g~~~~~~~~~-~--~---~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 390 GTLIVPSEYFFPGVDV-S--D---YQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp TEECEEGGGSCTTCCC-T--T---CSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHH
T ss_pred CeEEecchhhcCCCCC-c--c---cccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHH
Confidence 9999877665221000 0 0 00124799999997 899999999999998864
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=228.27 Aligned_cols=344 Identities=16% Similarity=0.115 Sum_probs=225.1
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN 130 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g 130 (452)
.|+.+.+++.+.+.... +...+...++++.++++++.+ ++++|+|||+|+.+++.++ .+++|
T Consensus 18 ~~~~~~~a~~~~~~~~~--------~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~al~~~~~~~-------~~~~g 79 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGW--------ITTGPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMAL-------GIGEG 79 (393)
T ss_dssp CCHHHHHHHHHHHHHTC--------CSSSHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT-------TCCTT
T ss_pred CCHHHHHHHHHHHhcCC--------cCCChHHHHHHHHHHHHhCCC---cEEEecChHHHHHHHHHHc-------CCCCC
Confidence 45668888888775421 112456889999999999984 7999999999999999976 24789
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh-HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE-EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~-~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
|+|+++.++|+++...+ ...|.+++.+++ +.+ +.+ ++++++++ .+++++|++++ ++|...|
T Consensus 80 d~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~----~~~~~~~d~~~l~~~l------~~~~~~v~~~~---~~G~~~~ 142 (393)
T 1mdo_A 80 DEVITPSMTWVSTLNMI----VLLGANPVMVDV----DRDTLMVTPEHIEAAI------TPQTKAIIPVH---YAGAPAD 142 (393)
T ss_dssp CEEEEESSSCHHHHHHH----HHTTCEEEEECB----CTTTCCBCHHHHHHHC------CTTEEEECCBC---GGGCCCC
T ss_pred CEEEeCCCccHhHHHHH----HHCCCEEEEEec----cCCcCCCCHHHHHHhc------CCCceEEEEeC---CCCCcCC
Confidence 99999999999986655 446999999954 222 234 89999998 46789988864 7899999
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCCccccccccC-ccEEEEcCc--ccCcCCCCcEEEEEe-cCccccCCCCCceeccC
Q 012991 209 VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG-ADFYVSNLH--KWFFCPPSVAFLYCR-KSILSSDMHHPVVSHEF 284 (452)
Q Consensus 209 l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~-~d~~~~s~~--K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~ 284 (452)
+++|.++|+++|+ ++|+|++|+.|... +...++ .|++++|+| |++.++. .|+++.+ +++++. + .+......
T Consensus 143 ~~~i~~l~~~~~~-~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~-~g~~~~~~~~~~~~-l-~~~~~~~~ 217 (393)
T 1mdo_A 143 LDAIYALGERYGI-PVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAE-GGIVVTDNPQFADK-L-RSLKFHGL 217 (393)
T ss_dssp HHHHHHHHHHHTC-CBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSS-CEEEEESCHHHHHH-H-HHHTBTTE
T ss_pred HHHHHHHHHHcCC-eEEEECccccCCeE-CCeecCCCCeEEEeCCCCCcccccc-ceEEEeCCHHHHHH-H-HHHHhcCC
Confidence 9999999999999 79999999987543 222334 899999999 9876655 5888886 555543 1 11100000
Q ss_pred CC----------CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc----
Q 012991 285 GN----------GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP---- 350 (452)
Q Consensus 285 ~~----------~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---- 350 (452)
.. .........|+......++...++..+. +++++.++.+++++++.+.|.+++ +++...+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~ 292 (393)
T 1mdo_A 218 GVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ----KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEH 292 (393)
T ss_dssp ECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCE
T ss_pred cccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCC
Confidence 00 0000000112111111112222233333 567778888889999999998874 6654322
Q ss_pred ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC-----ccceEEecccccCC
Q 012991 351 EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI-----ITGYARISHQVYNT 425 (452)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iRis~~~~~t 425 (452)
...+.++++.++... .+.+..++.+.|.+ .||.++.++.+................. ...++|++++.++|
T Consensus 293 ~~~~~~~~v~~~~~~---~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 368 (393)
T 1mdo_A 293 IHAWHLFIIRVDEAR---CGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMT 368 (393)
T ss_dssp ECCCSCEEEECCHHH---HSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCC
T ss_pred CceeEEEEEEecccc---cccCHHHHHHHHHh-CCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCC
Confidence 122457888875100 02467789999977 4999876543310000000000000000 13489999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 012991 426 LEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~~ 443 (452)
++|+++++++|+++++..
T Consensus 369 ~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 369 ESDFDRVITALHQIAGQG 386 (393)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999998764
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=230.21 Aligned_cols=346 Identities=16% Similarity=0.114 Sum_probs=227.8
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
++.+..+.+...+ +.+++.+.+... .+...+...++++.++++++.+ ++++++|||+|+.+++.++
T Consensus 8 ~~~l~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~~~~~- 73 (374)
T 3uwc_A 8 YSYLERQFADIEP--YLNDLREFIKTA--------DFTLGAELEKFEKRFAALHNAP---HAIGVGTGTDALAMSFKML- 73 (374)
T ss_dssp SCCHHHHTSSCHH--HHHHHHHHHHHT--------CCSSCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHT-
T ss_pred eeccccCCCCchH--HHHHHHHHHHcC--------CcccChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHc-
Confidence 3444444333333 788887766432 1234567899999999999984 7899999999999999876
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
.+++||+|+++.++|++....+ ...|.+++.++. ++++.+ ++++++.+ .+++++|+
T Consensus 74 ------~~~~gd~v~~~~~~~~~~~~~~----~~~g~~~~~~~~----~~~~~~d~~~l~~~~------~~~~~~v~--- 130 (374)
T 3uwc_A 74 ------NIGAGDEVITCANTFIASVGAI----VQAGATPVLVDS----ENGYVIDPEKIEAAI------TDKTKAIM--- 130 (374)
T ss_dssp ------TCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECB----CTTSSBCGGGTGGGC------CTTEEEEC---
T ss_pred ------CCCCCCEEEECCCccHHHHHHH----HHcCCEEEEEec----CCCCCcCHHHHHHhC------CCCceEEE---
Confidence 2588999999999999976665 456999999954 333333 78888888 56788888
Q ss_pred cCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccC--ccEEEEcCc--ccCcCCCCcEEEEEecC-cccc
Q 012991 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG--ADFYVSNLH--KWFFCPPSVAFLYCRKS-ILSS 273 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~l~g~~G~G~l~~~~~-~~~~ 273 (452)
++||+|.+.|+++|.++|+++|+ ++|+|++|+.|.. ++....+ +|++++|+| |++.++...|+++.+++ +.+.
T Consensus 131 ~~n~~G~~~~~~~i~~~~~~~~~-~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~ 208 (374)
T 3uwc_A 131 PVHYTGNIADMPALAKIAKKHNL-HIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEK 208 (374)
T ss_dssp CBCGGGCCCCHHHHHHHHHHTTC-EEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHH
T ss_pred EeCCcCCcCCHHHHHHHHHHcCC-EEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHH
Confidence 77899999999999999999999 8999999998765 3333333 699999977 98655222577777653 3222
Q ss_pred CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCCcc-
Q 012991 274 DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSLGSPPE- 351 (452)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~- 351 (452)
+ ..... .+..........+ .++ ....+.+++..... ++++.+.++.+++.+++.+.|.++++ +.+...+.
T Consensus 209 -~-~~~~~--~~~~~~~~~~~~~-~~~-~~~~~~aa~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 280 (374)
T 3uwc_A 209 -L-RLYRN--HGLINRDVCVEYG-INC-RMDTIQAVIANRLM--NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREG 280 (374)
T ss_dssp -H-HHHTB--TTEEETTEESSCC-CBC-BCCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTT
T ss_pred -H-HHHHh--cCccccCcccccc-ccC-CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCC
Confidence 1 11100 0000000000001 111 33445555555443 26788888999999999999988866 66543322
Q ss_pred cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC------CC----CCccceEEeccc
Q 012991 352 ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD------KD----GIITGYARISHQ 421 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~------~~----~~~~~~iRis~~ 421 (452)
....+..+.+. ..+..++.+.|.++ ||.++.++..+- ++...... .. ....+.+|++++
T Consensus 281 ~~~~~~~~~~~-------~~~~~~l~~~L~~~-gi~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~ 349 (374)
T 3uwc_A 281 VYHVFHIYVLR-------VKYRDQLFQYLKDN-GIEVKIHYPIAM---HLQPAAKSLGYQQGDFPMAEKHGEAVITLPAH 349 (374)
T ss_dssp EECCCSSEEEE-------ETTHHHHHHHHHHT-TBCCBCSCSSCG---GGSGGGGGGCCCTTSCHHHHHHHHHEEEECCC
T ss_pred CceeeEEEEEE-------cCCHHHHHHHHHHC-CCccccCCCCcc---ccChhhhhcCCccCCCccHHHHHhCEEEccCC
Confidence 11222223221 12567899999775 999876541100 00000000 00 011278999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhcc
Q 012991 422 VYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.++|++||++++++|++++++.
T Consensus 350 ~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 350 PYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998763
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=229.14 Aligned_cols=333 Identities=16% Similarity=0.161 Sum_probs=218.5
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+.+++|+.+....+++.+.+++.+.. .... .+.......++++++++++|.+ .+++++|||+|+.+++.+
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~a~~~~~-----~~~~--~y~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~~~~~ 72 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRKAMAQAE-----VGDD--VYGEDPTINELERLAAETFGKE---AALFVPSGTMGNQVSIMA 72 (347)
T ss_dssp --CEECSCGGGCCCCHHHHHHHHTCC-----CCCG--GGTCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHH
T ss_pred ceEEEeccccCCCCCHHHHHHHhcCC-----CCCc--ccCCChHHHHHHHHHHHHhCCc---eEEEecCcHHHHHHHHHH
Confidence 35689988887777777888876431 1111 2334556789999999999984 678999999999988887
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +++||+|++++++|.+.+.... ++...|.+++.+ .. +++.+ ++++++++++.....+++++|++
T Consensus 73 ~--------~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v-~~----~~~~~d~~~l~~~i~~~~~~~~~~~~v~~ 138 (347)
T 1jg8_A 73 H--------TQRGDEVILEADSHIFWYEVGA-MAVLSGVMPHPV-PG----KNGAMDPDDVRKAIRPRNIHFPRTSLIAI 138 (347)
T ss_dssp H--------CCTTCEEEEETTCHHHHSSTTH-HHHHTCCEEEEE-CE----ETTEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred h--------cCCCCEEEEcCcchhhhccccc-hhhccCeEEEEe-cC----CCCccCHHHHHHHhccccccccCceEEEE
Confidence 6 5799999999999987543211 145568888887 31 12223 88999988421000137999999
Q ss_pred eccCCCC-cccccH---HHHHHHHHHcCCCEEEEecccccCC---ccccccc--cCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 197 DHITSMP-CVVIPV---RKLVKICRDEGVDQVFVDAAHAMGS---IKIDVKE--IGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 197 ~~~~n~t-G~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~---~~~~~~~--~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
++++||| |.++|. ++|.++|+++|+ ++++|+++..+. .+.+... .++|.+++|+||+++++.| ++++.+
T Consensus 139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~-~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~~ 216 (347)
T 1jg8_A 139 ENTHNRSGGRVVPLENIKEICTIAKEHGI-NVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG-SVVVGD 216 (347)
T ss_dssp ESSBTTTTSBCCCHHHHHHHHHHHHHHTC-EEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSC-EEEEEC
T ss_pred eccccccCCccCcHHHHHHHHHHHHHCCC-EEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCce-EEEEcC
Confidence 9999999 999875 578899999999 899999875432 1122221 2578888999998766654 456666
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + ..... .++ ++.......+ ..+...+.. ..+.+. +..++++++.+.|.++ ++.+.
T Consensus 217 ~~~~~~-~-~~~~~-~~~----------~~~~~~~~~~-~~~~~~l~~---~~~~~~-~~~~~~~~l~~~L~~~-~~~~~ 277 (347)
T 1jg8_A 217 RDFIER-A-RKARK-MLG----------GGMRQAGVLA-AAGIIALTK---MVDRLK-EDHENARFLALKLKEI-GYSVN 277 (347)
T ss_dssp HHHHHH-H-HHHHH-HHT----------CCCSSTHHHH-HHHHHHHHH---SSTTHH-HHHHHHHHHHHHHHHH-TCBCC
T ss_pred HHHHHH-H-HHHHH-HcC----------CchhHHHHHH-HHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHhc-Cceec
Confidence 666553 1 11100 011 1111111111 111222222 122222 3345678888899888 77653
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
.++ ..++++++.++. .+.+..++.+.|.+ .||.+..+. .+++|++++.+++++
T Consensus 278 ~~~-~~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~--------------------~~~iRl~~~~~~~~e 330 (347)
T 1jg8_A 278 PED-VKTNMVILRTDN-----LKVNAHGFIEALRN-SGVLANAVS--------------------DTEIRLVTHKDVSRN 330 (347)
T ss_dssp GGG-CCSSEEEEECTT-----SSSCHHHHHHHHHH-HTEECEEEE--------------------TTEEEEECCTTSCHH
T ss_pred cCC-CcceEEEEEccc-----ccCCHHHHHHHHHH-CCCEEecCC--------------------CCeEEEEeCCCCCHH
Confidence 222 236788888862 13467789999976 499986421 358999998889999
Q ss_pred HHHHHHHHHHHHHhc
Q 012991 428 DYEKFRDAVILLVEE 442 (452)
Q Consensus 428 di~~l~~~l~~~~~~ 442 (452)
|+++++++|+++++.
T Consensus 331 ~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 331 DIEEALNIFEKLFRK 345 (347)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-28 Score=244.21 Aligned_cols=290 Identities=12% Similarity=0.127 Sum_probs=215.5
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
.......++++.+++ +|++ +++++|+|+|+|+.+++.++ +++||+|++++++|+++..++.. .|.
T Consensus 54 ~~~~~~~~~~~~la~-~g~~--~~v~~~~G~t~a~~~~~~a~--------~~~gd~Vlv~~~~h~s~~~~~~~----~G~ 118 (446)
T 2x3l_A 54 HPEEVILKSMKQVEK-HSDY--DGYFLVNGTTSGILSVIQSF--------SQKKGDILMARNVHKSVLHALDI----SQQ 118 (446)
T ss_dssp SCSSHHHHHHHHHCS-CTTE--EEEEESSHHHHHHHHHHHTT--------TTSSSCEEECTTCCHHHHHHHHH----HTC
T ss_pred CcchHHHHHHHHHHh-cCCC--ceEEEeCCHHHHHHHHHHHh--------cCCCCEEEEecCccHHHHHHHHH----cCC
Confidence 345568999999999 9995 78999999999999999976 58899999999999999887755 488
Q ss_pred EEEEEeCCCCCCCh----HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccc
Q 012991 157 SVVEVQLPFPLASE----EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 157 ~v~~~~~~~~~~~~----~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
+++.++... +++ +.+ +++| + ++++++|++++ .|++|.+.|+++|+++|++||+ ++|+|++|+
T Consensus 119 ~~~~v~~~~--~~~~~~~~~~d~~~l---~------~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~-~livDea~~ 185 (446)
T 2x3l_A 119 EGHFIETHQ--SPLTNHYNKVNLSRL---N------NDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNI-PVLIDEAHG 185 (446)
T ss_dssp CEEECEEEE--CTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTC-CEEEECTTC
T ss_pred eEEEEeCee--ccccCcCCCCCHHHH---c------CCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCC-eEEEcchhh
Confidence 888886411 221 222 4555 3 46789999999 5669999999999999999999 699999988
Q ss_pred cCCc-----cccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccH
Q 012991 232 MGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVI 306 (452)
Q Consensus 232 ~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (452)
. .. +.+....++|+++.|+||+++|+.|+|+++++++.++. .++... ...+..+++++..+.++
T Consensus 186 ~-~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~---~~~~~~-------~~~~~~~s~~~~~~aal 254 (446)
T 2x3l_A 186 A-HFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYR---ENIIEY-------LSYFQTSSPSYLIMASL 254 (446)
T ss_dssp T-TTTSTTSCCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTH---HHHHHH-------HHHHSCSSCCHHHHHHH
T ss_pred h-hhccCCCCCChHHcCCCEEEECCccccccccccEEEEEcCCcCCH---HHHHHH-------HHHHcCCCchHHHHHHH
Confidence 6 22 44555567899999999998999899999998886541 111000 01123467777777777
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcce
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGV 386 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 386 (452)
.++++++... |.+++.++.+++++++++. ++++..+.. ...+++.++ +.+..++.+.|.++ ||
T Consensus 255 ~~a~~~l~~~--g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~--~~~l~i~~~-------~~~~~~l~~~L~~~-GI 317 (446)
T 2x3l_A 255 ESAAQFYKTY--DSTLFFAKRAQLIECLENK-----GFEMLQVDD--PLKLLIKYE-------GFTGHDIQNWFMNA-HI 317 (446)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHHHH-----TCEEEECSS--TTEEEEECT-------TSCHHHHHHHHHHT-TE
T ss_pred HHHHHHHHHh--CHHHHHHHHHHHHHHHHHc-----CCEECcCCC--CeEEEEEeC-------CcCHHHHHHHHHHC-CC
Confidence 7788888864 6666777777777777665 666554432 335777774 45677899999876 99
Q ss_pred EeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 387 EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.+... ..+++|++++.++|++|+ +++++|+++.+..
T Consensus 318 ~v~~~--------------------g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 318 YLELA--------------------DDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp EESEE--------------------CSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EEEec--------------------CCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 98511 125899999999999999 9999999998654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-28 Score=238.22 Aligned_cols=343 Identities=16% Similarity=0.153 Sum_probs=229.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHh--cCCchh-h-h-hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhc
Q 012991 46 GSFGSCPKSVLADQQKWQLKFL--QQPDDF-Y-F-NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~--~~~~~~-~-~-~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
.+.++.|+.+.+++.+.+.... +++... + + ....++.+.+++++++++|.+ ...+++++||+|+.+++.++
T Consensus 30 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~--~~~i~~~sGt~a~~~a~~~~-- 105 (405)
T 2vi8_A 30 ASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE--HANVQPHSGAQANMAVYFTV-- 105 (405)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHH--
T ss_pred cCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC--ceEEEecCcHHHHHHHHHHh--
Confidence 3345558889999988763211 112111 1 1 123345556889999999996 34444555699999999987
Q ss_pred ccccCCCCCCCEEEEeCCcchhHHHHHH--HHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEe
Q 012991 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQ--AYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 121 ~~~~~~~~~g~~Vl~~~~~~~s~~~~~~--~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
+++||+|+++.++|+++...+. .+.. .+.++..++++ ...+.+ ++++++++++ .++++|+++
T Consensus 106 ------~~~gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~---~~~~~~d~~~l~~~i~~-----~~~~~v~~~ 170 (405)
T 2vi8_A 106 ------LEHGDTVLGMNLSHGGHLTHGSPVNFSG-VQYNFVAYGVD---PETHVIDYDDVREKARL-----HRPKLIVAA 170 (405)
T ss_dssp ------CCTTCEEEEECGGGTCCTTTTCTTSHHH-HHSEEEEECBC---TTTCSBCHHHHHHHHHH-----HCCSEEEEC
T ss_pred ------cCCCCEEEEecccccchhcccchhhhcc-ceeEEEecccc---cccCCcCHHHHHHHHHh-----cCCeEEEEe
Confidence 4789999999999987643111 0111 13467766431 022333 8899998852 267888774
Q ss_pred ccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccccccc---CccEEEEcCcccCcCCCCcEEEEEecCccccC
Q 012991 198 HITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEI---GADFYVSNLHKWFFCPPSVAFLYCRKSILSSD 274 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~ 274 (452)
+++ .|...++++|.++|++||+ ++|+|++|+.|..+.+.... .+|++++|+||+++|+.| |++++++++++.
T Consensus 171 -~~~-~~~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~- 245 (405)
T 2vi8_A 171 -AAA-YPRIIDFAKFREIADEVGA-YLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQ- 245 (405)
T ss_dssp -CSS-CCSCCCHHHHHHHHHHHTC-EEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHH-
T ss_pred -CCC-CCccCCHHHHHHHHHHcCC-EEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHH-
Confidence 333 4677799999999999999 79999999876443332222 579999999999777898 999998776654
Q ss_pred CCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc
Q 012991 275 MHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354 (452)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 354 (452)
+ .+.. . ....++++.....++.++++.+... +++.++++.+++++++.+.|.++ ++++..+.. .+
T Consensus 246 l-~~~~---~-------~~~~~~~~~~~~aa~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~ 310 (405)
T 2vi8_A 246 I-DKAI---F-------PGIQGGPLMHVIAAKAVAFGEALQD--DFKAYAKRVVDNAKRLASALQNE-GFTLVSGGT-DN 310 (405)
T ss_dssp H-HHHH---T-------TTTCSSCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-SS
T ss_pred H-Hhhh---c-------ccccCCCCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCC-Cc
Confidence 1 1110 0 0012444555555566677765532 67889999999999999999987 777665432 36
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc----cCCHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV----YNTLEDYE 430 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~t~~di~ 430 (452)
+++++.++. .+.+..++.+.|.+ +||.+..+..+.+.. ....++++|++++. ..+++|++
T Consensus 311 ~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~----------~~~~~~~iRis~~~~~~~~~~~~~i~ 374 (405)
T 2vi8_A 311 HLLLVDLRP-----QQLTGKTAEKVLDE-VGITVNKNTIPYDPE----------SPFVTSGIRIGTAAVTTRGFGLEEMD 374 (405)
T ss_dssp SEEEEECGG-----GTCCHHHHHHHHHH-HTEECEEECCTTCSS----------CTTTCSEEEEECHHHHHTTCCHHHHH
T ss_pred eEEEEEccC-----CCCCHHHHHHHHHH-cCceeccCcCccccC----------CCCCCCceEEeeeeeeecCCCHHHHH
Confidence 788888752 13356788888866 599997765321000 01234689999986 35799999
Q ss_pred HHHHHHHHHHhcc
Q 012991 431 KFRDAVILLVEEG 443 (452)
Q Consensus 431 ~l~~~l~~~~~~~ 443 (452)
+++++|+++++..
T Consensus 375 ~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 375 EIAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998754
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=228.68 Aligned_cols=316 Identities=14% Similarity=0.089 Sum_probs=219.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..++.|+.+.+++.+.+... ...... + ..+..++++++++++++.+ ++++++|+||++|+.+++.++. .
T Consensus 58 ~~g~~~~~v~~a~~~~~~~~-~~~~~~--~-~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~~a~~~al~~~~------~ 126 (395)
T 1vef_A 58 NLGHGNPEVVEAVKRQAETL-MAMPQT--L-PTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFAR------A 126 (395)
T ss_dssp TTCBTCHHHHHHHHHHHHHC-CCCCTT--S-CCHHHHHHHHHHHHTSCTT-EEEEEEESSHHHHHHHHHHHHH------H
T ss_pred cCCCCCHHHHHHHHHHHHhC-CCCccc--c-CCHHHHHHHHHHHHhcCCC-cCEEEEcCcHHHHHHHHHHHHH------H
Confidence 34557788999999887653 222111 1 3567899999999999874 6899999999999999998652 1
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhcCcE------------EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS------------VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~------------v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
+.++++|++.++.|++....+. ...|.+ +..+ +..+ +++|++++ .+++++|
T Consensus 127 ~~~~~~vi~~~~~y~~~~~~~~---~~~g~~~~~~~~~p~~~~~~~~----~~~d----~~~l~~~i------~~~~~~v 189 (395)
T 1vef_A 127 HTGRKKFVAAMRGFSGRTMGSL---SVTWEPKYREPFLPLVEPVEFI----PYND----VEALKRAV------DEETAAV 189 (395)
T ss_dssp HHSCCEEEEETTCCCCSSHHHH---HTCCCHHHHGGGCSCSSCEEEE----CTTC----HHHHHHHC------CTTEEEE
T ss_pred HhCCCeEEEEcCCcCCCchhhh---hhcCCcccccccCCCCCCeeEe----CCCc----HHHHHHHh------ccCEEEE
Confidence 2468899999998876444332 223433 3344 2222 78899988 4679999
Q ss_pred EEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
++++++|+||.+.| +++|.++|++||+ ++|+|++|+ ++.. +++.....+|++ |++|+++++.++|+++
T Consensus 190 ~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~ 266 (395)
T 1vef_A 190 ILEPVQGEGGVRPATPEFLRAAREITQEKGA-LLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAV 266 (395)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEE
T ss_pred EEeCccCCCCccCCCHHHHHHHHHHHHHcCC-EEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEE
Confidence 99988899999888 9999999999999 899999998 3221 122233357877 5689987767789999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++++. +. .. ..+ ...+.+...+.++.++++.+.+ +.+.++.+++++++.+.|.++. ..
T Consensus 267 ~~~~~~~~-l~-~~---~~~--------~~~~~~~~~~~a~~~al~~~~~-----~~~~~~~~~~~~~l~~~l~~~~-~~ 327 (395)
T 1vef_A 267 MREEVARS-MP-KG---GHG--------TTFGGNPLAMAAGVAAIRYLER-----TRLWERAAELGPWFMEKLRAIP-SP 327 (395)
T ss_dssp EEHHHHHT-SC-TT---SSC--------CSSTTCHHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHTSC-CT
T ss_pred ehHHHHhh-hc-cC---CcC--------CCcCCCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhh-cC
Confidence 99887664 21 11 000 0123344444455556665543 3457778889999999998763 22
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+.......+.++++.++. +..++.+.|.++.||.+..+ .++++|++++..++
T Consensus 328 ~~~~~~~~g~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~~--------------------~~~~iRi~~~~~~~ 379 (395)
T 1vef_A 328 KIREVRGMGLMVGLELKE--------KAAPYIARLEKEHRVLALQA--------------------GPTVIRFLPPLVIE 379 (395)
T ss_dssp TEEEEEEETTEEEEEESS--------CSHHHHHHHHHHHCEECEES--------------------STTEEEECCCTTCC
T ss_pred ceEEEEEEEEEEEEEEcC--------hHHHHHHHHHHHCCeEEecC--------------------CCCEEEEeCCCCCC
Confidence 221112236788888762 24678888872359998642 13699999998899
Q ss_pred HHHHHHHHHHHHHHH
Q 012991 426 LEDYEKFRDAVILLV 440 (452)
Q Consensus 426 ~~di~~l~~~l~~~~ 440 (452)
++|+++++++|++++
T Consensus 380 ~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 380 KEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=230.72 Aligned_cols=313 Identities=13% Similarity=0.133 Sum_probs=208.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++++|+++|.+ .+++++||++|+.+++.++ +++||+|+++.++|++....+..+.++
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~---~~i~~ssGt~Ai~~al~~l--------~~~Gd~Vi~~~~~y~~~~~~~~~~l~~ 144 (415)
T 2fq6_A 76 YGRRGTLTHFSLQQAMCELEGGA---GCVLFPCGAAAVANSILAF--------IEQGDHVLMTNTAYEPSQDFCSKILSK 144 (415)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT--------CCTTCEEEEETTSCHHHHHHHHHTGGG
T ss_pred ccCCCCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHH
Confidence 44445677899999999999984 5677789999999999876 589999999999999988877655567
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccc
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHA 231 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~ 231 (452)
.|++++.++. ++ ++++++++ .++|++|++++++||+|.+.|+++|+++|++ +|+ ++|+|++++
T Consensus 145 ~G~~v~~v~~----~d----~~~le~ai------~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~-~livD~a~a 209 (415)
T 2fq6_A 145 LGVTTSWFDP----LI----GADIVKHL------QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDA-IIMIDNTWA 209 (415)
T ss_dssp GTCEEEEECT----TC----GGGGGGGC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTC-EEEEECTTT
T ss_pred cCcEEEEECC----CC----HHHHHHhh------ccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCC-EEEEECCCc
Confidence 7999999943 32 57888888 5689999999999999999999999999999 999 899999998
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
.+.....+ .+++|++++|+||+++++.+ .|+++.++++++. + .... . ..|+... .. ....+
T Consensus 210 ~~~~~~p~-~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~-l-~~~~-~-----------~~G~~~~-~~-~a~~~ 272 (415)
T 2fq6_A 210 AGVLFKAL-DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQ-L-RENA-Y-----------LMGQMVD-AD-TAYIT 272 (415)
T ss_dssp TTTSSCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHH-H-HHHH-H-----------HTTCCCC-HH-HHHHH
T ss_pred ccccCCcc-ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHH-H-HHHH-H-----------hcCCCCC-HH-HHHHH
Confidence 66432222 35799999999997544432 5899888776553 1 1110 0 0121111 11 11112
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHH
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDAL 374 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
+..++. +....++..+++..+.+.|.+.+.+. +..|. ...+++++|.++... +..+..
T Consensus 273 ~~~l~~----l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~---~~~~~~ 345 (415)
T 2fq6_A 273 SRGLRT----LGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL---NNEELA 345 (415)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC---CHHHHH
T ss_pred HhhhhH----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC---CHHHHH
Confidence 222221 23334556677888888887764432 21111 124789999986100 013455
Q ss_pred HHHHHHhhhcceEeeecccCCCCCCC--C----CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 375 RLRGHLRVRFGVEVPIHYQAPKDDGQ--P----QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~~~~~~~~~--~----~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
.+.+.|. .+++.+..+..+.-. .+ + .....+..+..++.||+|++..+++++|+.+.++|++
T Consensus 346 ~~l~~l~-~~~~a~s~G~~~s~~-~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 346 NYLDNFS-LFSMAYSWGGYESLI-LANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp HHHTTCS-SCEECSCCCSSSCEE-EEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HHHHhCC-cCeEeccCCCCceeE-EecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 6666653 346666544221100 00 0 0000011234468999999999999999999999875
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-28 Score=239.66 Aligned_cols=360 Identities=15% Similarity=0.054 Sum_probs=236.9
Q ss_pred HHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHH--HhcCCchhh--hhhhh-HHHHHHHHHHHhHhCCCCCCc
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLK--FLQQPDDFY--FNSLR-KGILESRAAVKDLINADDVGE 100 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~--~~~~~~~~~--~~~~~-~~~~~~~~~la~~~~~~~~~~ 100 (452)
+..+++++.. ...++.+..+.... |+.+.+++.+.+.. ...++...+ +.... ...+.+++++++++|++ ++.
T Consensus 12 ~~~~~~~~~~-~~~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~-~~~ 88 (407)
T 2dkj_A 12 FELIALEEKR-QREGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA-WAN 88 (407)
T ss_dssp HHHHHHHHHH-HHTSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEE
T ss_pred HHHHHHHHHH-hhcceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC-cce
Confidence 4555555543 24567776665444 88899999887643 112222211 11111 22334678999999996 333
Q ss_pred EEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc--EEEEEeCCCCCCChHHH-HHHH
Q 012991 101 ISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG--SVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 101 i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~--~v~~~~~~~~~~~~~~~-~~~l 177 (452)
+ ++++||+|+..++.++ +++|++|++++++|+++...+.. +...|. .+..++++ .+.+.+ ++++
T Consensus 89 i-~~~sGt~a~~~~~~~~--------~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~---~~~~~~d~~~l 155 (407)
T 2dkj_A 89 V-QPHSGSQANMAVYMAL--------MEPGDTLMGMDLAAGGHLTHGSR-VNFSGKLYKVVSYGVR---PDTELIDLEEV 155 (407)
T ss_dssp C-CCSSHHHHHHHHHHHH--------CCTTCEEEEECGGGTCCGGGTCT-TSHHHHHSEEEEECCC---TTTSSCCHHHH
T ss_pred E-EecchHHHHHHHHHHh--------cCCCCEEEEecccccCccchHHH-HHhcCceEEEEecCCC---cccCccCHHHH
Confidence 4 4455677999999987 47899999999999886311110 112244 44444221 112233 8999
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccc---cCccEEEEcCccc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE---IGADFYVSNLHKW 254 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~---~~~d~~~~s~~K~ 254 (452)
++++++ .++++|++++++|+ ...|+++|.++|++||+ ++|+|++|+.|....+... ..+|++++|+||+
T Consensus 156 ~~~l~~-----~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~ 227 (407)
T 2dkj_A 156 RRLALE-----HRPKVIVAGASAYP--RFWDFKAFREIADEVGA-YLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKT 227 (407)
T ss_dssp HHHHHH-----HCCSEEEECCSSCC--SCCCHHHHHHHHHHHTC-EEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGG
T ss_pred HHHHhh-----cCCeEEEEeccccC--CCCCHHHHHHHHHHcCC-EEEEEccccccccccCccCCccccccEEEEecccc
Confidence 999852 36889999888885 78899999999999999 7999999987554322111 1379999999999
Q ss_pred CcCCCCcEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 012991 255 FFCPPSVAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 255 l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~ 333 (452)
+.|+.| |+++++ +++++. + .+... ....++++.....++.++++..... +++.++++.++++++
T Consensus 228 l~g~~~-G~~~~~~~~~~~~-l-~~~~~----------~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~ 292 (407)
T 2dkj_A 228 LRGPRG-GLILSNDPELGKR-I-DKLIF----------PGIQGGPLEHVIAGKAVAFFEALQP--EFKEYSRLVVENAKR 292 (407)
T ss_dssp GCCCSC-EEEEESCHHHHHH-H-HHHHT----------TTTCSSCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHH
T ss_pred CCCCCc-eEEEECCHHHHHH-H-Hhhhc----------ccccCCCcHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence 888887 999998 576654 1 11100 0011344444444556677665422 678899999999999
Q ss_pred HHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 334 MARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 334 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
+.+.|.++ ++++..++ ..++++++.++. .+.+..++.+.|.+ +||.+..+..+.+.. ....+
T Consensus 293 l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~----------~~~~~ 354 (407)
T 2dkj_A 293 LAEELARR-GYRIVTGG-TDNHLFLVDLRP-----KGLTGKEAEERLDA-VGITVNKNAIPFDPK----------PPRVT 354 (407)
T ss_dssp HHHHHHHT-TCEEGGGS-CSSSEEEEECGG-----GTCCHHHHHHHHHH-TTEECEECCCTTCSS----------CTTTC
T ss_pred HHHHHHhC-CceeecCC-CCceEEEEECcc-----cCCCHHHHHHHHHH-cCceecCCcCccccc----------cccCC
Confidence 99999987 77765432 237788888862 12366788898865 599997665321100 01235
Q ss_pred ceEEeccccc----CCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVY----NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~----~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++.+ .+++|+++++++|+++++.
T Consensus 355 ~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 355 SGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp SEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 6899999764 6899999999999999876
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=227.79 Aligned_cols=311 Identities=14% Similarity=0.128 Sum_probs=206.3
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 75 FNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
.+...+..+++++.+++++|.+ +.++++||++|+..++.++ +++|++|+++.++|+++...+..++...
T Consensus 60 ~r~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~~~ 128 (398)
T 1gc0_A 60 SRISNPTLNLLEARMASLEGGE---AGLALASGMGAITSTLWTL--------LRPGDEVLLGNTLYGCTFAFLHHGIGEF 128 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEESSCCSHHHHHHHHTGGGG
T ss_pred cCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hcCCCEEEEeCCCchhHHHHHHHHHHHc
Confidence 3335678899999999999984 5667777789999999987 4789999999999999888876555678
Q ss_pred CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC
Q 012991 155 GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS 234 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~ 234 (452)
|++++.++ .++ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.+.
T Consensus 129 g~~~~~~~----~~d----~~~l~~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~~~~~~~ 193 (398)
T 1gc0_A 129 GVKLRHVD----MAD----LQALEAAM------TPATRVIYFESPANPNMHMADIAGVAKIARKHGA-TVVVDNTYCTPY 193 (398)
T ss_dssp TCEEEEEC----TTC----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTC-EEEEECTTTHHH
T ss_pred CCEEEEEC----CCC----HHHHHHhc------CCCCeEEEEECCCCCCcccccHHHHHHHHHHcCC-EEEEECCCcccc
Confidence 99999994 332 68889888 5689999999999999999999999999999999 799999998776
Q ss_pred ccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 235 IKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 235 ~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
..... ..++|+++.|+||+++++.+ .|+++++++.+.. ...+... . .+.++.+....++...+++
T Consensus 194 ~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~-~~~~~~~-~---------~~~~~~~~~~~~~~~~~l~- 260 (398)
T 1gc0_A 194 LQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDR-IRLQGLK-D---------MTGAVLSPHDAALLMRGIK- 260 (398)
T ss_dssp HCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHH-HHHTHHH-H---------HTCCCCCHHHHHHHHHHHT-
T ss_pred cCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHH-HHHHHhh-c---------cCCCCCCHHHHHHHHhccc-
Confidence 53333 35789999999998766654 4999888776542 0111110 0 0112233222222222322
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC--------------CCcCCCc-ccccceEEEEcCCccccCChhhHHHHH
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWG--------------TSLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLR 377 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (452)
.+....++..++++.+.+.|.+.+. +.+..++ ...++++.|.++ + +...+.
T Consensus 261 ------~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-------~-~~~~~~ 326 (398)
T 1gc0_A 261 ------TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK-------G-GIGAGR 326 (398)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET-------T-HHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEEC-------C-CHHHHH
Confidence 2344455566677777777766432 2222221 134788888875 1 123455
Q ss_pred HHHhhhcceEeeecccC--------CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 378 GHLRVRFGVEVPIHYQA--------PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 378 ~~L~~~~gI~v~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+.|.+ .+|.++..... .....++.... .+..+..++.+|+|++..+++++|+.+.++|+++
T Consensus 327 ~~l~~-~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 327 RFMNA-LQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHHH-CSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 55543 47765431100 00000111111 0011234689999999999999999999999875
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=222.35 Aligned_cols=310 Identities=13% Similarity=0.112 Sum_probs=213.7
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC-
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF- 127 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~- 127 (452)
++.++.+.+++.+.+... .++...+ ......++++++++++|++ +++++|+|||+|+.+++.++ +. ..
T Consensus 43 g~~~~~v~~a~~~~~~~~-~~~~~~y---~~~~~~~l~~~la~~~g~~--~~v~~~~g~t~a~~~~~~~~-~~----~~~ 111 (375)
T 2eh6_A 43 GHAYPKLTEALKEQVEKL-LHVSNLY---ENPWQEELAHKLVKHFWTE--GKVFFANSGTESVEAAIKLA-RK----YWR 111 (375)
T ss_dssp CBSCHHHHHHHHHHHHHC-SCCCTTB---CCHHHHHHHHHHHHTSSSC--EEEEEESSHHHHHHHHHHHH-HH----HHH
T ss_pred CCCCHHHHHHHHHHHHhc-cccCccc---CCHHHHHHHHHHHhhcCCC--CeEEEeCchHHHHHHHHHHH-HH----Hhc
Confidence 336778999999887653 2222222 2346788999999999983 79999999999999998753 11 12
Q ss_pred --CCC-CEEEEeCCcchhHHHHHHHHHHh----cCcE-----EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 128 --HRN-DTVLMLHCAFQAVKKSIQAYVTR----AGGS-----VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 128 --~~g-~~Vl~~~~~~~s~~~~~~~~a~~----~g~~-----v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++| ++|++++++|++....+..+... .|.. +..+ +..+ +++|++++ .+++++|+
T Consensus 112 ~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l------~~~~~~v~ 177 (375)
T 2eh6_A 112 DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYA----KLND----IDSVYKLL------DEETAGII 177 (375)
T ss_dssp HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEE----CTTC----HHHHHTTC------CTTEEEEE
T ss_pred cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeC----CCch----HHHHHHHh------cCCeEEEE
Confidence 567 99999999988765554332100 0111 4444 2222 78888888 46899999
Q ss_pred EeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc--ccccccC--ccEEEEcCcccCcCCCCcEEEEE
Q 012991 196 IDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK--IDVKEIG--ADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 196 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
+++++|+||.+.| +++|.++|++||+ ++|+|++|+ ++..+ ++...++ +|++++| |+++++.++|++++
T Consensus 178 ~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~ 254 (375)
T 2eh6_A 178 IEVIQGEGGVNEASEDFLSKLQEICKEKDV-LLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILA 254 (375)
T ss_dssp ECSEETTTTSEECCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEE
T ss_pred EeCccCCCCCcCCCHHHHHHHHHHHHHhCC-EEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEE
Confidence 9999999999988 9999999999999 799999998 54432 2334444 8888655 98887777999999
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
++++++. +. +.. .+.. .++ +...+ ..+...+... +.+.++++++++++.+.|.+++. ..
T Consensus 255 ~~~~~~~-~~-~~~---~~~~-------~~~-~~~~~---~~~~~~l~~~----~~~~~~~~~~~~~l~~~L~~~~~-~~ 313 (375)
T 2eh6_A 255 REEVAQS-FT-PGS---HGST-------FGG-NPLAC---RAGTVVVDEV----EKLLPHVREVGNYFKEKLKELGK-GK 313 (375)
T ss_dssp EHHHHTT-CC-TTS---CCCS-------STT-CHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTS-SE
T ss_pred cHHHHhh-hc-CCC---CCCC-------CCC-CHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 9887665 22 210 1100 011 22222 2233333332 15677888999999999988632 21
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
. + ..+.++++.++. +..++.+.|.+ .||.+..+ .++++|++++..+++
T Consensus 314 ~-~--~~g~~~~~~~~~--------~~~~~~~~l~~-~gi~~~~~--------------------~~~~iRi~~~~~~~~ 361 (375)
T 2eh6_A 314 V-K--GRGLMLGLELER--------ECKDYVLKALE-KGLLINCT--------------------AGKVLRFLPPLIIQK 361 (375)
T ss_dssp E-E--EETTEEEEECSS--------CCHHHHHHHHH-TTEECEEE--------------------TTTEEEECCCTTCCH
T ss_pred c-e--EEEEEEEEEEcC--------cHHHHHHHHHH-CCCEEecC--------------------CCCEEEEECCCCCCH
Confidence 1 1 236788888751 34678888876 59998642 136899999888899
Q ss_pred HHHHHHHHHHHHH
Q 012991 427 EDYEKFRDAVILL 439 (452)
Q Consensus 427 ~di~~l~~~l~~~ 439 (452)
+|+++++++|+++
T Consensus 362 ~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 362 EHIDRAISVLREI 374 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=226.43 Aligned_cols=309 Identities=15% Similarity=0.152 Sum_probs=204.5
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|+....+..+++++++++++|.+ ++++++||++|+..++.++ +++||+|+++.+.|+++...|...++.
T Consensus 56 Y~~~~~~~~~~l~~~ia~~~g~~---~~i~~~~g~~ai~~~~~~l--------~~~gd~Vl~~~~~y~~~~~~~~~~~~~ 124 (404)
T 1e5e_A 56 YTRLGNPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTI--------LKAGDHLISDECLYGCTHALFEHALTK 124 (404)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEESCCCHHHHHHHHTHHHH
T ss_pred ccCCcChHHHHHHHHHHHHhCCC---cEEEeCChHHHHHHHHHHH--------hCCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 33344567789999999999984 6788888899999999977 489999999999999988876655677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH-cCCCEEEEeccccc
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD-EGVDQVFVDAAHAM 232 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~~ivD~a~~~ 232 (452)
.|++++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|++ +|+ ++|+|++++.
T Consensus 125 ~g~~~~~v~~----~d----~~~l~~~i------~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~-~li~De~~~~ 189 (404)
T 1e5e_A 125 FGIQVDFINT----AI----PGEVKKHM------KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGV-LVIADNTFCS 189 (404)
T ss_dssp TTCEEEEECT----TS----TTHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTC-EEEEECTTTC
T ss_pred cCCEEEEECC----CC----HHHHHHhc------CCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCC-EEEEECCCch
Confidence 8999999953 32 57888888 5689999999999999999999999999999 999 8999999998
Q ss_pred CCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccc-cCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILS-SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
+...... .+++|+++.|+||+++++.+ .|+++++++++. . + .+.....++ +..+.... .++
T Consensus 190 ~~~~~~~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~-l-~~~~~~~~g----------~~~~~~~~---~~~ 253 (404)
T 1e5e_A 190 PMITNPV-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQI-R-MVGIKDITG----------SVISPHDA---WLI 253 (404)
T ss_dssp TTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHH-H-HTCCCCCCC----------CCCCHHHH---HHH
T ss_pred hhhCCcc-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHH-H-HHHHHhCCC----------CCCCHHHH---HHH
Confidence 7642222 35789999999998666655 499999988766 3 1 111100001 11222122 222
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-c-------------CCCc-ccccceEEEEcCCccccCChhhHH
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-L-------------GSPP-EICAAMVMVGLPSRLRVMGEDDAL 374 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~-------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
+..+. ..+...++..++...+.+.|.+.+.+. + ..++ ...++++.|.++ + ...
T Consensus 254 ~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~-------~-~~~ 321 (404)
T 1e5e_A 254 TRGLS----TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK-------S-GFE 321 (404)
T ss_dssp HHHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET-------T-HHH
T ss_pred HHhHh----HHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeC-------C-CHH
Confidence 22222 233345555667777777777653221 1 1110 123778888775 1 123
Q ss_pred HHHHHHhhhcceEeeecccCCCC-C--CCCCCCCCC--------CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 375 RLRGHLRVRFGVEVPIHYQAPKD-D--GQPQAGARD--------KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~~~~~~-~--~~~~~~~~~--------~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.+.|. +.||.++.. .+++. . .+|...... ..+..++++|+|++. +|++++++.|+++++.
T Consensus 322 ~~~~~l~-~~~i~~~~~-s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 322 GAKKLLD-NLKLITLAV-SLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDA 394 (404)
T ss_dssp HHHHHHH-TCSSSEESS-CCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCceecc-CCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHH
Confidence 4555554 458854321 11000 0 011111100 002235899999985 7888888888888753
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-26 Score=226.50 Aligned_cols=310 Identities=12% Similarity=0.095 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHhHhCCCC--------CCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH
Q 012991 80 KGILESRAAVKDLINADD--------VGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV 151 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~--------~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a 151 (452)
++.+.+.+.+++.+|.+. +++|++|+|+++|+.+++.++ +++||+|++++|.|++....+
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~---- 149 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI--------INPGDNVLLDEPAYSGTLQSL---- 149 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH--------CCTTCEEEEESSCCHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh--------CCCCCEEEEeCCCcHHHHHHH----
Confidence 344555555555568752 258999999999999999987 478999999999999865554
Q ss_pred HhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccc------cCCCceEEEEE-eccCCCCcccccHH---HHHHHHHHcCC
Q 012991 152 TRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGK------KDGKMIRLAII-DHITSMPCVVIPVR---KLVKICRDEGV 221 (452)
Q Consensus 152 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~------~~~~~~~lv~~-~~~~n~tG~~~~l~---~i~~l~~~~~~ 221 (452)
+..|.+++.+++ +.++..+++|++++++.. ...+++++|++ ++++||||.++|.+ +|+++|++||+
T Consensus 150 ~~~g~~~~~v~~----~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~ 225 (425)
T 2r2n_A 150 HPLGCNIINVAS----DESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225 (425)
T ss_dssp GGGTCEEEEECE----ETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCEEEEeCc----CCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC
Confidence 556999999854 333322889999885321 00146788866 78999999999866 88999999999
Q ss_pred CEEEEeccccc----CCcccccc---ccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCccccc
Q 012991 222 DQVFVDAAHAM----GSIKIDVK---EIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIES 292 (452)
Q Consensus 222 ~~~ivD~a~~~----g~~~~~~~---~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 292 (452)
++|+|++|+. |....++. ..+.++++.|++|++ + +| +|++++++++++. + ... ..
T Consensus 226 -~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~-~-~GlRiG~~~~~~~l~~~-l-~~~-----------~~ 289 (425)
T 2r2n_A 226 -LIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII-S-SGLRIGFLTGPKPLIER-V-ILH-----------IQ 289 (425)
T ss_dssp -EEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT-C-STTCCEEEEEEHHHHHH-H-HHH-----------HH
T ss_pred -EEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhc-c-CccceEEEecCHHHHHH-H-HHH-----------HH
Confidence 8999999873 22112222 224568889999975 5 56 7999999887764 1 111 00
Q ss_pred ccccccCccccccHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHHHHHH-cCC-CcCCCcccccceEEEEcCCccccC
Q 012991 293 AWIGTRDYSAQLVIPSAVTFVSR--FEGGIDGIMQRNHEQALKMARMLANA-WGT-SLGSPPEICAAMVMVGLPSRLRVM 368 (452)
Q Consensus 293 ~~~~~~~~~~~~~~~~al~~~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 368 (452)
....+.+...+.++..+++.+.+ +...++.++++++++++++.+.|.+. +++ .+..+.. +.++|+.++.
T Consensus 290 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~--g~~~~~~~~~----- 362 (425)
T 2r2n_A 290 VSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAA--GMFLWIKVKG----- 362 (425)
T ss_dssp TTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSB--SSEEEEEETT-----
T ss_pred HhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCc--eEEEEEEeCC-----
Confidence 01133444455555555554211 01135667788888999999999874 565 3444443 7788988862
Q ss_pred ChhhHHH-HHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 369 GEDDALR-LRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 369 ~~~~~~~-l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+..+ +.+.|.+ +||.+.++..+...+ ....+++|+|++. .+++++++++++|++++++
T Consensus 363 -~~~~~~~~~~~l~~-~gv~v~pg~~f~~~~-----------~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 363 -INDVKELIEEKAVK-MGVLMLPGNAFYVDS-----------SAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp -CSCCHHHHHTHHHH-TTEECEEGGGGSSST-----------TSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHH-CCcEEechhhhcCCC-----------CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 233344 5677765 599998766542210 0124799999984 4899999999999998864
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=234.15 Aligned_cols=346 Identities=11% Similarity=0.078 Sum_probs=229.7
Q ss_pred CCeEEeccCCCC----CCcHHHHHHHH--HHHHHHhcCCchhhhh-hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHH
Q 012991 38 HGVARINNGSFG----SCPKSVLADQQ--KWQLKFLQQPDDFYFN-SLRKGILESRAAVKDLINADDVGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~----~~p~~v~e~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a 110 (452)
...+.|..+.+. +.|+.+.+++. +.+. .+.....| ....+..+++++++++++++ +++|++|+|++++
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~----~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~a 99 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRM----DGLDLRNYPGGVAGLPSARALFAGYLDVK-AENVLVWNNSSLE 99 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEE----TTEETTSSCSCTTCCHHHHHHHHHHTTSC-GGGEEECSSCHHH
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHhh----cchhhhCCCCCCCChHHHHHHHHHHhCCC-hhhEEEeCCcHHH
Confidence 467899888777 35545777764 3321 22222334 44566789999999999996 7899999999999
Q ss_pred HH--HHHHHhhcccccCCCC--C---------CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHH
Q 012991 111 AA--IVLQQIGRGFTEGRFH--R---------NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEF 177 (452)
Q Consensus 111 ~~--~~~~~l~~~~~~~~~~--~---------g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l 177 (452)
+. +++.++. . + ||+|++++|+|++....+. ..|.+++.+++ +.++..+++|
T Consensus 100 l~~~~~~~~l~--------~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~----~~~g~d~~~l 163 (423)
T 3ez1_A 100 LQGLVLTFALL--------HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ----TLGFELLTVDM----QSDGPDVDAV 163 (423)
T ss_dssp HHHHHHHHHHH--------TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH----HHTCEEEEEEE----ETTEECHHHH
T ss_pred HHHHHHHHHHh--------ccCCCccccccCCCCEEEEcCCCcHHHHHHHH----HcCCEEEeccC----CCCCCCHHHH
Confidence 97 8888763 3 5 6999999999998766654 45999999965 3333228999
Q ss_pred HHHHhccccCCCceEEEEE-eccCCCCcccccHH---HHHHHH-HHcCCCEEEEecccccCCc-------cccc------
Q 012991 178 KKGIEKGKKDGKMIRLAII-DHITSMPCVVIPVR---KLVKIC-RDEGVDQVFVDAAHAMGSI-------KIDV------ 239 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~-~~~~n~tG~~~~l~---~i~~l~-~~~~~~~~ivD~a~~~g~~-------~~~~------ 239 (452)
++++++ ++++++|++ ++++||||.++|.+ +|+++| +++|+ ++|+|++|+.... ..++
T Consensus 164 ~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 238 (423)
T 3ez1_A 164 ERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDF-TIFADDAYRVHHLVEEDRAEPVNFVVLARD 238 (423)
T ss_dssp HHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTC-EEEEECTTSSCBCCSSSCCCCCCHHHHHHH
T ss_pred HHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCC-EEEEECCcchhhcCCCCCCCCcchhhhhhc
Confidence 999953 367899875 58999999999977 778888 89999 8999999874211 1111
Q ss_pred -cccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhh
Q 012991 240 -KEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFE 317 (452)
Q Consensus 240 -~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~ 317 (452)
...+.++++.|+||++.++.++|+++.+++++.. + .... .......+...+.++..+++. ...+.
T Consensus 239 ~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~-~-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~~~~~ 305 (423)
T 3ez1_A 239 AGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRW-L-SKYL-----------GAQSIGPNKVEQARHVKFLTEYPGGLE 305 (423)
T ss_dssp HTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHH-H-HHHH-----------HHSCSCCCHHHHHHHHHHHHHSTTHHH
T ss_pred cCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHH-H-HHHH-----------hhhccCCCHHHHHHHHHHHHhccchHH
Confidence 1235678899999975555668999998877664 1 1110 000122233333333333332 11000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HcC----CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-c
Q 012991 318 GGIDGIMQRNHEQALKMARMLAN-AWG----TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI-H 391 (452)
Q Consensus 318 ~g~~~~~~~~~~~~~~l~~~L~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~-~ 391 (452)
..++..++.++++++.+.+.|.+ ++. +.+..+.. ++++++.++. . +...+.+.|.+ +||.+.+ +
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~--g~~~~~~~~~------~-~~~~~~~~l~~-~gv~v~~~g 375 (423)
T 3ez1_A 306 GLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKG--GYFISLDTAE------P-VADRVVKLAEA-AGVSLTPAG 375 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSB--SSCEEEEESS------S-CHHHHHHHHHH-TTEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCc--cEEEEEECCC------C-cHHHHHHHHHH-CCcEEecCc
Confidence 12444555555666666666654 222 44444443 7788888862 2 56778888866 5999976 4
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
..+.... ...++++||+++.. +++++++++++|+++++...
T Consensus 376 ~~~~~~~-----------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 376 ATYPAGQ-----------DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp TTSSTTC-----------CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCC-----------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 3332100 13467999999765 89999999999999987543
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-26 Score=223.65 Aligned_cols=308 Identities=14% Similarity=0.144 Sum_probs=209.7
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
+...+...+++++++++++.+ +.+++ ++|++|+.+++.++ .++|++|+++.++|+++...+..+++..|
T Consensus 48 ~~~~~~~~~l~~~la~~~~~~--~~i~~-~sGt~a~~~~~~~~--------~~~g~~vl~~~~~~~~~~~~~~~~~~~~g 116 (386)
T 1cs1_A 48 RRGNPTRDVVQRALAELEGGA--GAVLT-NTGMSAIHLVTTVF--------LKPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHTCS--EEEEE-SSHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred CCCCccHHHHHHHHHHHhCCC--cEEEe-CCHHHHHHHHHHHH--------hCCCCEEEEecCCcHhHHHHHHHHHHhcC
Confidence 334567889999999999985 55555 55599999999976 47899999999999998887766667789
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc
Q 012991 156 GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI 235 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~ 235 (452)
.++..++ .++ ++++++.++ +++++|++++++||+|.+.|+++|.++|+++|+ ++|+|++|+.+..
T Consensus 117 ~~~~~~~----~~d----~~~l~~~i~------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~De~~~~~~~ 181 (386)
T 1cs1_A 117 YRVLFVD----QGD----EQALRAALA------EKPKLVLVESPSNPLLRVVDIAKICHLAREVGA-VSVVDNTFLSPAL 181 (386)
T ss_dssp CEEEEEC----TTC----HHHHHHHHH------TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTTCTTT
T ss_pred CEEEEeC----CCC----HHHHHHhhc------cCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCC-EEEEECCCccccc
Confidence 9999984 332 688888884 578999999999999999999999999999999 8999999988765
Q ss_pred cccccccCccEEEEcCcccCcCCCCc--EEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 236 KIDVKEIGADFYVSNLHKWFFCPPSV--AFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 236 ~~~~~~~~~d~~~~s~~K~l~g~~G~--G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
.... ..++|+++.|+||+++++.+. |++++++ ++++. + .+.. ..+.++.+....++...+++
T Consensus 182 ~~~~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~-l-~~~~-----------~~~~~~~~~~~~~~~~~~l~- 246 (386)
T 1cs1_A 182 QNPL-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTE-L-AWWA-----------NNIGVTGGAFDSYLLLRGLR- 246 (386)
T ss_dssp CCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHH-H-HHHH-----------HHHTCBCCHHHHHHHHHHHT-
T ss_pred CCcc-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHH-H-HHHH-----------HhcCCCCCHHHHHHHHhccc-
Confidence 4333 357899999999987777663 9999886 56554 1 1110 00112222222222212222
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCC-------------c-ccccceEEEEcCCccccCChhhHHHHH
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSP-------------P-EICAAMVMVGLPSRLRVMGEDDALRLR 377 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (452)
.+....++..++.+.+.+.|.+++.+. +..+ + ...++++.|.++ + ....+.
T Consensus 247 ------~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~ 312 (386)
T 1cs1_A 247 ------TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD-------G-DEQTLR 312 (386)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-------S-CHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC-------C-CHHHHH
Confidence 234445566677777777776653321 1111 0 123778888875 2 145677
Q ss_pred HHHhhhcceEeee---c------ccCCCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 378 GHLRVRFGVEVPI---H------YQAPKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 378 ~~L~~~~gI~v~~---~------~~~~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.|.+ .||.++. + ..+.. ..+|..+. ....+..++++|+|++..+++++|+++.++|+++.
T Consensus 313 ~~l~~-~gi~~~~~~~g~~~sl~~~~~~-~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 313 RFLGG-LSLFTLAESLGGVESLISHAAT-MTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp HHHHT-CSSSEEBSCCCSSSCEEEEGGG-TTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHh-CCcceEcccCCCcceeeecccc-cccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 77765 5998863 1 11100 00111000 00001235899999999999999999999998764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-26 Score=225.19 Aligned_cols=310 Identities=13% Similarity=0.161 Sum_probs=210.0
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++++++++|.+ ..+++++|++|+.+++.++ +++||+|+++++.|++....+...+..
T Consensus 108 y~r~~~~~~~~l~~~lA~l~g~~---~~v~~~sG~~Ai~~al~~l--------~~~Gd~Vi~~~~~y~~~~~~~~~~~~~ 176 (445)
T 1qgn_A 108 YGRYGNPTTVVLEEKISALEGAE---STLLMASGMCASTVMLLAL--------VPAGGHIVTTTDCYRKTRIFIETILPK 176 (445)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH--------SCSSCEEEEETTSCHHHHHHHHHTGGG
T ss_pred ccCCCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH--------hCCCCEEEEcCCCchhHHHHHHHHHHH
Confidence 44445678899999999999984 4455566669999999977 478999999999999877766544567
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce-EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccccc
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI-RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAM 232 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~-~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~ 232 (452)
.|++++.++ .++ +++++++++ +++ ++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.
T Consensus 177 ~G~~v~~v~----~~d----~~~l~~ai~------~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~-~livD~a~~~ 241 (445)
T 1qgn_A 177 MGITATVID----PAD----VGALELALN------QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGA-LVCIDGTFAT 241 (445)
T ss_dssp GTCEEEEEC----SSC----HHHHHHHHH------HSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTTC
T ss_pred cCCEEEEeC----CCC----HHHHHHHhc------cCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCC-EEEEECCCcc
Confidence 899999994 333 688999884 467 999999999999999999999999999999 8999999987
Q ss_pred CCccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
+... ....+++|+++.|+||+ +|+.| .|+++.++++++. + .... ..+.++++.... ..+
T Consensus 242 ~~~~-~~~~~g~Div~~S~sK~-~gg~gd~~~G~l~~~~~l~~~-l-~~~~-----------~~~g~~~~~~~a---~~~ 303 (445)
T 1qgn_A 242 PLNQ-KALALGADLVLHSATKF-LGGHNDVLAGCISGPLKLVSE-I-RNLH-----------HILGGALNPNAA---YLI 303 (445)
T ss_dssp TTTC-CTTTTTCSEEEECTTTT-TTCSSSCCCEEEEECHHHHHH-H-HHHH-----------HHHCCCCCHHHH---HHH
T ss_pred cccC-CccccCCEEEEECCccc-ccccccceEEEEEECHHHHHH-H-HHHH-----------HHhCCCCCHHHH---HHH
Confidence 7543 22346899999999997 55565 7999998877664 1 1110 001111221111 111
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc--------------ccccceEEEEcCCccccCChhhHH
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPP--------------EICAAMVMVGLPSRLRVMGEDDAL 374 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
+..++ .+....++..++++++.+.|.+.+++ .+..|. ...+++++|.++. ...+..
T Consensus 304 ~~~l~----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~-----~~~~~~ 374 (445)
T 1qgn_A 304 IRGMK----TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG-----DLLTTA 374 (445)
T ss_dssp HHHGG----GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS-----CHHHHH
T ss_pred HHhHH----HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC-----CHHHHH
Confidence 22222 23333455566788899999887766 443331 1257899999861 112356
Q ss_pred HHHHHHhhhcceEeeecccCCCC-------CCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 375 RLRGHLRVRFGVEVPIHYQAPKD-------DGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.+.|. .+++.+..+..+.-- ..........+.+..++.||+|++ .||++.+++.|+++++
T Consensus 375 ~~l~~l~-~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 375 KFVDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp HHHHHCS-SSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred HHHHhCC-CceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 6777764 347766544332100 000000001112344689999998 4689999999998875
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=236.06 Aligned_cols=346 Identities=15% Similarity=0.155 Sum_probs=216.9
Q ss_pred CCeEEeccC--CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 38 HGVARINNG--SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 38 ~~~~~l~~~--~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
..+++++.+ ...+.|+.+.++...........+...|........+++++++++++|.+ ++++++||++|+.+++
T Consensus 89 ~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~---~~i~~~sGt~al~~~l 165 (464)
T 1ibj_A 89 TLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKAD---RAFCFTSGMAALSAVT 165 (464)
T ss_dssp HHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHH
T ss_pred CeEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHH
Confidence 456777764 23455555666654321000111222233334457899999999999973 7788888899988776
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
. + +++||+|+++++.|+++...+..++...|.+++.++. ++ +++|++++ .+++++|+
T Consensus 166 ~-~--------~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~----~d----~~~l~~~i------~~~tk~v~ 222 (464)
T 1ibj_A 166 H-L--------IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT----TK----LDEVAAAI------GPQTKLVW 222 (464)
T ss_dssp T-T--------SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT----TS----HHHHHHHC------CSSEEEEE
T ss_pred H-H--------hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC----CC----HHHHHHHh------ccCceEEE
Confidence 4 3 5899999999999999877765556778999999943 32 68899988 57899999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCc--EEEEEec-Cccc
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSV--AFLYCRK-SILS 272 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~--G~l~~~~-~~~~ 272 (452)
+++++||+|.++|+++|+++|++||+ ++|+|++|+.|...... .+++|+++.|+||+++|+.|+ |++++++ ++++
T Consensus 223 l~~p~NptG~v~~l~~i~~la~~~gi-~livDea~~~g~~~~~~-~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~ 300 (464)
T 1ibj_A 223 LESPTNPRQQISDIRKISEMAHAQGA-LVLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAK 300 (464)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHTTTC-EEEEECTTTCTTTCCGG-GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHH
T ss_pred EeCCCCCCCEeecHHHHHHHHHHcCC-EEEEECCCcccccCChh-hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHH
Confidence 99999999999999999999999999 89999999887642122 257899999999998887775 9999986 5554
Q ss_pred cCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH-----------
Q 012991 273 SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA----------- 341 (452)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----------- 341 (452)
. + .... ...| +..+.... .+++..+. ......++..+....+.+.|.+.
T Consensus 301 ~-l-~~~~-~~~g----------~~~~~~~~---~a~~~al~----~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L 360 (464)
T 1ibj_A 301 E-V-YFLQ-NSEG----------SGLAPFDC---WLCLRGIK----TMALRIEKQQENARKIAMYLSSHPRVKKVYYAGL 360 (464)
T ss_dssp H-H-HHHH-HHTT----------CBCCHHHH---HHHHHHHT----THHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTS
T ss_pred H-H-HHHH-HhcC----------CCCCHHHH---HHHHhchh----hHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCC
Confidence 3 1 1110 0001 11121121 22222222 11111222223333344444432
Q ss_pred ---cCCCcCCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeeccc----C-CCCCCCCCCC--CCCCCC
Q 012991 342 ---WGTSLGSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ----A-PKDDGQPQAG--ARDKDG 410 (452)
Q Consensus 342 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~----~-~~~~~~~~~~--~~~~~~ 410 (452)
+++++..++. ..+++++|.++ .......+.+.|.. .||.++.+.. + +..-.++... .....+
T Consensus 361 ~~~p~~~~~~~~~~g~g~~~~~~l~------~~~~~~~~~~~L~~-~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g 433 (464)
T 1ibj_A 361 PDHPGHHLHFSQAKGAGSVFSFITG------SVALSKHLVETTKY-FSIAVSFGSVKSLISMPCFMSHASIPAEVREARG 433 (464)
T ss_dssp TTSTTHHHHTTTCSCCCSEEEEECS------CHHHHHHHHHHCSS-SEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSS
T ss_pred CCCcchHHHhccCCCCceEEEEEEC------CHHHHHHHHHhcCc-ceEeecCCCCceeeecccccccccCCHHHHHhcC
Confidence 2333333322 24678998874 12234568888754 5888865531 0 0000000000 111113
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+|++. +|++++++.|+++++.
T Consensus 434 ~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 434 LTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp CCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred CCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 346799999985 8899999999998864
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=221.53 Aligned_cols=309 Identities=17% Similarity=0.136 Sum_probs=212.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..++++++++++++.+ ++++++||++|+..++.++ +++||+|+++.++|++....+..+...
T Consensus 60 y~r~~~~~~~~l~~~la~~~g~~---~~~~~~sGt~A~~~al~~~--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~ 128 (392)
T 3qhx_A 60 YARTGNPTRTALEAALAAVEDAA---FGRAFSSGMAAADCALRAM--------LRPGDHVVIPDDAYGGTFRLIDKVFTG 128 (392)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHHHHTGGG
T ss_pred ccCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEeCCCcchHHHHHHHHHHh
Confidence 34445677899999999999984 7899999999999999977 488999999999999988777655577
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|.+++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.+
T Consensus 129 ~g~~~~~v~~----~d----~~~l~~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~-~li~D~~~~~~ 193 (392)
T 3qhx_A 129 WNVEYTPVAL----AD----LDAVRAAI------RPTTRLIWVETPTNPLLSIADIAGIAQLGADSSA-KVLVDNTFASP 193 (392)
T ss_dssp GTCEEEEECT----TC----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTC-EEEEECTTTCT
T ss_pred cCcEEEEeCC----CC----HHHHHHhh------CCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 33 78899998 5789999999999999999999999999999999 89999999876
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
.. .+...+++|+++.|++|+++++.+ .|+++.++ ++... + ... ...+ ....+. .....++
T Consensus 194 ~~-~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~-l-~~~-~~~~----------g~~~~~---~~~~~~~ 256 (392)
T 3qhx_A 194 AL-QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQS-F-AFL-QNGA----------GAVPGP---FDAYLTM 256 (392)
T ss_dssp TT-CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHH-H-HHH-HHHH----------CCCCCH---HHHHHHH
T ss_pred cc-CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHH-H-HHH-HHhc----------CCCCCH---HHHHHHH
Confidence 43 233355799999999998544332 68888874 44443 1 110 0000 011111 1122233
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
..+. .+....++..++++++.+.|.+.+.+. +..|. ...+++++|.++. +......
T Consensus 257 ~~l~----~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~-----~~~~~~~ 327 (392)
T 3qhx_A 257 RGLK----TLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA-----GRTAAEQ 327 (392)
T ss_dssp HHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-----CHHHHHH
T ss_pred hhhh----HHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC-----cHHHHHH
Confidence 3333 344456667788888888898776542 32221 1237789999862 1356778
Q ss_pred HHHHHhhhcceEeeecccCCC-----CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHH
Q 012991 376 LRGHLRVRFGVEVPIHYQAPK-----DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
+.+.|.. +++.+..+..+.- ...+.. ...+..+..++.||+|++..+++++|+.+.++|
T Consensus 328 ~~~~l~~-~~~~~s~G~~~sl~~~~~~~~~~~-~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 328 LCAKTNI-FILAESLGSVESLIEHPSAMTHAS-TAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp HHHHCSS-SEECSCCCCSSCEEECGGGTSCGG-GBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHhCCC-ceECCCCCCCCceeeCcccccccc-cCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 8888854 5777654332100 000000 000022345789999999887777788777765
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=230.85 Aligned_cols=353 Identities=16% Similarity=0.109 Sum_probs=221.2
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCchh-hh-h-hhhHHHHHHHHHHHhHhCCCCCC---cEEEecChhHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDDF-YF-N-SLRKGILESRAAVKDLINADDVG---EISLVDNATTA 110 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~~-~~-~-~~~~~~~~~~~~la~~~~~~~~~---~i~~t~g~t~a 110 (452)
..+.|- ++..+.++.|++++...+.... ++|+.. +. . ...++.+.+++++++++|++ .+ ..++++|||+|
T Consensus 55 ~~i~li-as~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~-~~~~~~~v~~~sGt~A 132 (490)
T 2a7v_A 55 RGLELI-ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD-PAQWGVNVQPYSGSPA 132 (490)
T ss_dssp HSEECC-TTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC-TTTEEEECCCSSHHHH
T ss_pred cCceEE-CCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCC-cccCceEEeCCchHHH
Confidence 344444 3666788889999988765433 334332 11 1 12345557889999999996 33 24667799999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHH----HHHhcCcEEEEEeCCCCCC-ChHHH-HHHHHHHHhcc
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQA----YVTRAGGSVVEVQLPFPLA-SEEEI-INEFKKGIEKG 184 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~----~a~~~g~~v~~~~~~~~~~-~~~~~-~~~l~~~i~~~ 184 (452)
+..++.++ +++||+|++++++|.++...... .+...|..+..+++ +.+ +.+.+ ++++++.++.
T Consensus 133 n~~al~al--------~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~--~vd~~~~~iD~d~le~~l~~- 201 (490)
T 2a7v_A 133 NLAVYTAL--------LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY--KLNPKTGLIDYNQLALTARL- 201 (490)
T ss_dssp HHHHHHHH--------CCSCEECCC-------------------------------C--CBCTTTCSBCHHHHHHHHHH-
T ss_pred HHHHHHHH--------cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEec--ccccccCCcCHHHHHHHHhh-
Confidence 99999987 58999999999988764321110 01223544444433 223 23445 8999999853
Q ss_pred ccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCC
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
.++++|+++.++| |...|+++|.++|++||+ ++++|++|+.|.. +..+. ++|++++|+||++.||.
T Consensus 202 ----~~~klIi~~~s~~--~~~~dl~~i~~ia~~~g~-~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~ 272 (490)
T 2a7v_A 202 ----FRPRLIIAGTSAY--ARLIDYARMREVCDEVKA-HLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGAR 272 (490)
T ss_dssp ----HCCSEEEECCSSC--CSCCCHHHHHHHHHHTTC-EEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCS
T ss_pred ----cCCcEEEEcCCCC--CCcccHHHHHHHHHHcCC-EEEEccccccccccCCcCCCCCC--CCCEEEECCcccCcccc
Confidence 3678888877666 457899999999999999 8999999976543 22222 68999999999988998
Q ss_pred CcEEEEEecCcccc----------CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSS----------DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 260 G~G~l~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
| |+++++++++.. .+........+.+ ..++++...+.++..|+..+... +++...++..+
T Consensus 273 G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g-------~qggp~~~~iaAla~Al~~~~~~--~~~~~~~~~~~ 342 (490)
T 2a7v_A 273 S-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS-------LQGGPHNHAIAAVAVALKQACTP--MFREYSLQVLK 342 (490)
T ss_dssp C-EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTT-------TCCSCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHH
T ss_pred c-hheeeccchhcccccccchhhHHHHHHHHHHhccc-------CCCCchHHHHHHHHHHHHHHhhh--hHHHHHHHHHH
Confidence 7 999998864210 0000000000000 12456666666676677665421 45778889999
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++++.+.|.+. |+++..+. ...+++++.+.. .+.+..++.+.|.+ .||.+.....+...+
T Consensus 343 na~~L~~~L~~~-G~~v~~~~-t~t~lv~vdl~~-----~g~~~~~~~~~L~~-~GI~v~~~~~p~d~~----------- 403 (490)
T 2a7v_A 343 NARAMADALLER-GYSLVSGG-TDNHLVLVDLRP-----KGLDGARAERVLEL-VSITANKNTCPGDRS----------- 403 (490)
T ss_dssp HHHHHHHHHHHT-TCEEGGGS-CSSSEEEEECTT-----TTCCHHHHHHHHHH-TTEECEEECCTTCCC-----------
T ss_pred HHHHHHHHHHHc-CcEEecCC-CCCeEEEEEeCC-----CCCCHHHHHHHHHh-CCeEEecCccCCCCC-----------
Confidence 999999999986 88775422 125678887742 24567788888865 599997654332211
Q ss_pred CCccceEEecccc----cCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQV----YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~----~~t~~di~~l~~~l~~~~~~ 442 (452)
...++.||+++.. ..+++|++++++.|.+++..
T Consensus 404 p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 404 AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 2345789997743 34789999999999999864
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=228.47 Aligned_cols=337 Identities=12% Similarity=0.028 Sum_probs=220.2
Q ss_pred CCCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC-CCCCC---cEEEecC
Q 012991 37 QHGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN-ADDVG---EISLVDN 106 (452)
Q Consensus 37 ~~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~---~i~~t~g 106 (452)
+..++.|..+.+ .+.|+.+.+++.+..... ...|....+..++++.+++++. ...++ ++++|+|
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g 110 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE------HVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAG 110 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH------HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc------cCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCc
Confidence 457899988853 356777888876643311 1123333345667777777652 11135 9999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
|++|+..++.++ +++||+|+++.|.|++....+ ...|.+++.+++.. +++.+ ++.|++++++..
T Consensus 111 ~~~al~~~~~~l--------~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~---~~~~~d~~~l~~~l~~~~ 175 (418)
T 3rq1_A 111 GTGGIHHLIHNY--------TEPGDEVLTADWYWGAYRVIC----SDTGRTLVTYSLFD---EHNNFNHEAFQNRVNELA 175 (418)
T ss_dssp HHHHHHHHHHHH--------SCTTCEEEEESSCCTHHHHHH----HHTTCEEEEECSBC---TTSSBCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh--------cCCCCEEEECCCCchhHHHHH----HHcCCEEEEEeeeC---CCCCcCHHHHHHHHHHhh
Confidence 999999999987 589999999999999876554 55699999996521 12233 788888885210
Q ss_pred cCCCceE-EEEEecc-CCCCcccccHHHH---HHHHH------HcCCCEEEEecccccCCcc------c--cccccCcc-
Q 012991 186 KDGKMIR-LAIIDHI-TSMPCVVIPVRKL---VKICR------DEGVDQVFVDAAHAMGSIK------I--DVKEIGAD- 245 (452)
Q Consensus 186 ~~~~~~~-lv~~~~~-~n~tG~~~~l~~i---~~l~~------~~~~~~~ivD~a~~~g~~~------~--~~~~~~~d- 245 (452)
.++++ +++++++ +||||.++|.+++ +++|+ +||+ ++|+|+++...... + .......+
T Consensus 176 --~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
T 3rq1_A 176 --AKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNV-IIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEI 252 (418)
T ss_dssp --HHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEE-EEEEECTTGGGSSCHHHHHGGGGGGTTCCTTE
T ss_pred --ccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCe-EEEEecccccccCChHHHHHHHHHHHhcCCCc
Confidence 01454 8899999 9999999986655 55566 8999 79999998532211 0 11112233
Q ss_pred --EEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH---HH
Q 012991 246 --FYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV---SR 315 (452)
Q Consensus 246 --~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~ 315 (452)
+++.|+||. +|++| +|++++ ++++++. + ...... .........+...+.++..+++.. ..
T Consensus 253 ~~i~~~S~sK~-~~~~G~r~G~~~~~~~~~~~~~~-~-~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 322 (418)
T 3rq1_A 253 LTCVCYSLSKG-FTMYGQRVGAMIGISDDEEIADE-F-FEVNKS-------TSRATWSNICRPAMRTMANIVADPAKFKE 322 (418)
T ss_dssp EEEEEEESTTT-TTCCSSCCEEEEEEESSHHHHHH-H-HHHHHH-------HHHHHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred eEEEEEeCCCC-CcCcCCcceEEEEEeCCHHHHHH-H-HHHHHH-------HHhhccCCCchHHHHHHHHHhCCHHHHHH
Confidence 677899996 56555 788888 6666664 1 111000 000000123333333333333211 11
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCC
Q 012991 316 FEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAP 395 (452)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~ 395 (452)
+....+.++++++++++++.+.|.++ ++++..+.. +.++++.++ +..++.+.|.+ +||.+.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~---------~~~~~~~~l~~-~gi~v~~g---- 385 (418)
T 3rq1_A 323 YEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYRG--GFFITIPTD---------SANAICEELKK-EHIYVIAL---- 385 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCS--SSEEEEECT---------THHHHHHHHHH-TTEECEEC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCc--eEEEEcCCC---------CHHHHHHHHHh-CCEEEecC----
Confidence 11124566778888999999999988 887766544 556666553 56788888865 59998642
Q ss_pred CCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 396 KDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|+|++ ..+++++++++++|++++++
T Consensus 386 -----------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~ 414 (418)
T 3rq1_A 386 -----------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKS 414 (418)
T ss_dssp -----------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHH
T ss_pred -----------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHH
Confidence 358999987 45899999999999999875
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=219.78 Aligned_cols=319 Identities=9% Similarity=0.060 Sum_probs=215.9
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.++.++.+.+++.+.+... ...+.. + ..+..+++++.+++++|. +++++|+||++|+..++.++...... .
T Consensus 54 lg~~~~~v~~a~~~~~~~~-~~~~~~--~-~~~~~~~l~~~la~~~g~---~~v~~~~gg~~a~~~al~~~~~~~~~--~ 124 (397)
T 2ord_A 54 LGHSHPRLVEAIKDQAEKL-IHCSNL--F-WNRPQMELAELLSKNTFG---GKVFFANTGTEANEAAIKIARKYGKK--K 124 (397)
T ss_dssp TCBTCHHHHHHHHHHHHHC-SCCCTT--S-EEHHHHHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHH--H
T ss_pred cCCCCHHHHHHHHHHHHhc-ccCccc--c-CCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhc--C
Confidence 4556788999999887653 222221 1 346788999999999984 68999999999999999876310000 0
Q ss_pred CC-CCEEEEeCCcchhHHHHHHHHHHhcCcE------------EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 128 HR-NDTVLMLHCAFQAVKKSIQAYVTRAGGS------------VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 128 ~~-g~~Vl~~~~~~~s~~~~~~~~a~~~g~~------------v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
.+ +++|++.++.|++....+ +...|.+ +..++ .++ +++|++++ .+++++|
T Consensus 125 ~~~~~~vi~~~~~yh~~~~~~---~~~~g~~~~~~~~~p~~~~~~~~~----~~d----~~~l~~~l------~~~~~~v 187 (397)
T 2ord_A 125 SEKKYRILSAHNSFHGRTLGS---LTATGQPKYQKPFEPLVPGFEYFE----FNN----VEDLRRKM------SEDVCAV 187 (397)
T ss_dssp CTTCCEEEEEBTCCCCSSHHH---HHHSBCHHHHGGGCSCCTTEEEEC----TTC----HHHHHHHC------CTTEEEE
T ss_pred CCCCceEEEEcCCcCCCchhh---hhccCChhhccccCCCCCCeeEec----CCC----HHHHHHHh------hcCeEEE
Confidence 14 478999888886644422 1223443 66663 332 78899888 5689999
Q ss_pred EEeccCCCCcc-c---ccHHHHHHHHHHcCCCEEEEecccc-cCCc--ccccccc--CccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCV-V---IPVRKLVKICRDEGVDQVFVDAAHA-MGSI--KIDVKEI--GADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~-~---~~l~~i~~l~~~~~~~~~ivD~a~~-~g~~--~~~~~~~--~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
++++++||||. + .++++|+++|++||+ ++|+|++++ ++.. +.....+ .+|+++ ++|+++++.++|+++
T Consensus 188 ~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~d~~s--~sK~~~~G~r~G~~~ 264 (397)
T 2ord_A 188 FLEPIQGESGIVPATKEFLEEARKLCDEYDA-LLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT--TAKGLGGGVPIGAVI 264 (397)
T ss_dssp EECSEECTTTCEECCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEE
T ss_pred EEecccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEecccCCccCccchhhhhhCCCCCeee--eccccCCCcCeEEEE
Confidence 99999999999 4 457899999999999 899999997 2211 1222222 378774 479877555689999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GT 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~ 344 (452)
++++++ . +.... .+ ...+.+...+.++.++++.+. . +.++++++++++++.+.|.++. ++
T Consensus 265 ~~~~~~-~-l~~~~----~~--------~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~l~~~L~~~~~~~ 325 (397)
T 2ord_A 265 VNERAN-V-LEPGD----HG--------TTFGGNPLACRAGVTVIKELT----K-EGFLEEVEEKGNYLMKKLQEMKEEY 325 (397)
T ss_dssp ECSTTC-C-CCTTS----SC--------CSSTTCHHHHHHHHHHHHHHT----S-TTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EchHhc-c-cCCCC----cC--------CCCCCCHHHHHHHHHHHHHHH----h-CCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 988876 5 32110 00 011233334444444555433 1 4577888899999999998763 33
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+.......+.++++.++ ...+..++.+.|.+ .||.+..+ .++++|++++..+
T Consensus 326 ~~~~~~~~~g~~~~~~~~------~~~~~~~l~~~l~~-~gi~v~~~--------------------~~~~iRis~~~~~ 378 (397)
T 2ord_A 326 DVVADVRGMGLMIGIQFR------EEVSNREVATKCFE-NKLLVVPA--------------------GNNTIRFLPPLTV 378 (397)
T ss_dssp TTEEEEEEETTEEEEEEC------TTSCHHHHHHHHHH-TTEECEEE--------------------TTTEEEECCCTTC
T ss_pred CceEEEEEEeEEEEEEEC------ChHHHHHHHHHHHH-CCCEEccC--------------------CCCEEEEECCcCC
Confidence 322111223678888876 23356789999977 59998643 1368999998888
Q ss_pred CHHHHHHHHHHHHHHHh
Q 012991 425 TLEDYEKFRDAVILLVE 441 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~ 441 (452)
+++|+++++++|+++++
T Consensus 379 ~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 379 EYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=231.25 Aligned_cols=347 Identities=12% Similarity=0.047 Sum_probs=226.5
Q ss_pred CCCeEEeccCCCCCC----cHHHHHHH--HHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHH
Q 012991 37 QHGVARINNGSFGSC----PKSVLADQ--QKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTA 110 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~----p~~v~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a 110 (452)
...++.|..|.+... +..+.+++ .+.+. ..+.....|....+..++|++++++++++ +++|++|+|++++
T Consensus 32 ~~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~a 107 (427)
T 3ppl_A 32 KNLKLDLTRGKPSSEQLDFADELLALPGKGDFKA---ADGTDVRNYGGLDGIVDIRQIWADLLGVP-VEQVLAGDASSLN 107 (427)
T ss_dssp TCCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBC---TTSCBTTSSCCSSCCHHHHHHHHHHHTSC-GGGEEECSSCHHH
T ss_pred CCceEecCCCCCChHHCCCcHHHHHHhhhHHHhh---ccchhhcCCCCCCCcHHHHHHHHHHhCCC-cceEEEeCCcHHH
Confidence 345788887765522 11233333 22211 11112233444566789999999999996 7899999999999
Q ss_pred H--HHHHHHhhcccccCCCCC----------CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHH
Q 012991 111 A--AIVLQQIGRGFTEGRFHR----------NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 111 ~--~~~~~~l~~~~~~~~~~~----------g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l 177 (452)
+ .+++.++.. ..+ ||+|++++|+|.+....+ +..|.+++.+++ +.++ + +++|
T Consensus 108 l~~~~~~~~l~~------~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~----~~~g~~~~~v~~----~~~g-~d~~~l 172 (427)
T 3ppl_A 108 IMFDVISWSYIF------GNNDSVQPWSKEETVKWICPVPGYDRHFSIT----ERFGFEMISVPM----NEDG-PDMDAV 172 (427)
T ss_dssp HHHHHHHHHHHH------CCTTCSSCGGGSSCCEEEEEESCCHHHHHHH----HHTTCEEEEEEE----ETTE-ECHHHH
T ss_pred HHHHHHHHHHhc------cCCcccccccCCCCCEEEEcCCCcHHHHHHH----HHcCCEEEEeCC----CCCC-CCHHHH
Confidence 9 578777631 014 899999999999876655 446999999965 3333 4 8999
Q ss_pred HHHHhccccCCCceEEEEEe-ccCCCCcccccHH---HHHHHH-HHcCCCEEEEecccccCCc------ccccc------
Q 012991 178 KKGIEKGKKDGKMIRLAIID-HITSMPCVVIPVR---KLVKIC-RDEGVDQVFVDAAHAMGSI------KIDVK------ 240 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~-~~~n~tG~~~~l~---~i~~l~-~~~~~~~~ivD~a~~~g~~------~~~~~------ 240 (452)
+++++ .+++++|+++ +++||||.++|.+ +|+++| +++|+ ++|+|++++.... +.++.
T Consensus 173 ~~~l~-----~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 246 (427)
T 3ppl_A 173 EELVK-----NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDF-RVVWDNAYAVHTLTDEFPEVIDIVGLGEAA 246 (427)
T ss_dssp HHHTT-----STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTC-EEEEECTTTTCBSSSCCCCCCCHHHHHHHT
T ss_pred HHHHh-----cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCC-EEEEECCCcccccCCCCCCccchhhhhhcc
Confidence 99984 3688998865 8899999999977 788888 99999 7999999875221 11211
Q ss_pred -ccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC
Q 012991 241 -EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG 319 (452)
Q Consensus 241 -~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g 319 (452)
..+.++++.|+||++.++.++|+++.+++++.. + ... ........+...+.++..+++....+...
T Consensus 247 ~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~-~-~~~-----------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 313 (427)
T 3ppl_A 247 GNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKW-Y-TGH-----------AGIRGIGPNKVNQLAHARYFGDAEGVRAV 313 (427)
T ss_dssp TCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHH-H-HHH-----------HHHHCSCCCHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCcEEEEechhhccCcCccEEEEEcCHHHHHH-H-HHH-----------hhcccCCCCHHHHHHHHHHHhChhhHHHH
Confidence 235678999999974444558999888777664 1 111 00001122333333333333321100012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-c---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-cccC
Q 012991 320 IDGIMQRNHEQALKMARMLANA-W---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI-HYQA 394 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~-~~~~ 394 (452)
++..++.++++++.+.+.|.+. + ++.+..|.. +.++++.++. . +..++.+.|.+ +||.+.+ +..+
T Consensus 314 ~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~--g~~~~~~~~~------~-~~~~~~~~l~~-~gv~v~~~g~~~ 383 (427)
T 3ppl_A 314 MRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAG--GYFISLDVVP------G-TASRVAELAKE-AGIALTGAGSSY 383 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSB--SSCEEEECST------T-CHHHHHHHHHH-TTEECCCTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCc--cEEEEEECCc------c-hHHHHHHHHHH-CCCEEecCcCcC
Confidence 4556666677777777777552 2 355555544 7889998872 2 56788888866 5999976 3222
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.... ....+++|+|++.. ++++|++++++|++++++.
T Consensus 384 ~~~~-----------~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 384 PLRQ-----------DPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp GGGC-----------CTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-----------CCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 1100 12467999999754 8999999999999998753
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=221.77 Aligned_cols=339 Identities=15% Similarity=0.123 Sum_probs=219.7
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhh-hHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCC
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSL-RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR 129 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~ 129 (452)
.|+.+.+++.+.+... . +.. .+...++++.++++++. +++++|+|||+|+.+++.++ .+
T Consensus 30 ~p~~~~~a~~~~~~~~------~--y~~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~l~~l---------~~ 89 (424)
T 2po3_A 30 DRARLYERLDRALDSQ------W--LSNGGPLVREFEERVAGLAGV---RHAVATCNATAGLQLLAHAA---------GL 89 (424)
T ss_dssp CHHHHHHHHHHHHHHT------C--CSSSCHHHHHHHHHHHHHHTS---SEEEEESCHHHHHHHHHHHH---------TC
T ss_pred ChHHHHHHHHHHHhcC------C--cccCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc---------CC
Confidence 3677889888876531 1 222 46789999999999998 48999999999999999987 36
Q ss_pred CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 130 NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 130 g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
||+|++++++|+++..++ ...|.+++.++++. +.+.+ +++|++.+ .+++++|++++ ++|...+
T Consensus 90 gd~Vlv~~~~~~~~~~~~----~~~G~~~~~v~~~~---~~~~~d~~~l~~~i------~~~~~~v~~~~---~tG~~~~ 153 (424)
T 2po3_A 90 TGEVIMPSMTFAATPHAL----RWIGLTPVFADIDP---DTGNLDPDQVAAAV------TPRTSAVVGVH---LWGRPCA 153 (424)
T ss_dssp CSEEEEESSSCTHHHHHH----HHTTCEEEEECBCT---TTSSBCHHHHGGGC------CTTEEEEEEEC---GGGCCCC
T ss_pred CCEEEECCCccHHHHHHH----HHcCCEEEEEecCC---CcCCcCHHHHHHhh------CcCCcEEEEEC---CCCCcCC
Confidence 799999999999987654 44699999995421 12334 88898888 56889998864 7899999
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCCcccccccc--CccEEEEcCc--ccCcCCCCcEEEEEe-cCccccCCCCCceecc
Q 012991 209 VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEI--GADFYVSNLH--KWFFCPPSVAFLYCR-KSILSSDMHHPVVSHE 283 (452)
Q Consensus 209 l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~--~~d~~~~s~~--K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~ 283 (452)
+++|.++|+++|+ ++|+|++|+.|.. .+.... ..|+++.|+| |++.++ ..|+++.+ +++++. + .....
T Consensus 154 l~~i~~la~~~~~-~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~~-~~G~~v~~~~~l~~~-l-~~~~~-- 226 (424)
T 2po3_A 154 ADQLRKVADEHGL-RLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVNAF-EGGAVVTDDADLAAR-I-RALHN-- 226 (424)
T ss_dssp HHHHHHHHHHTTC-EEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHH-H-HHHHB--
T ss_pred HHHHHHHHHHcCC-EEEEECccccCCe-ECCeecccccCEEEEeCCCCCCccCC-CCeEEEeCCHHHHHH-H-HHHHh--
Confidence 9999999999999 7999999997654 221111 1588888887 976553 36888887 565543 1 11110
Q ss_pred CCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-ccc--cceEEEE
Q 012991 284 FGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-EIC--AAMVMVG 360 (452)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~--~~~~~~~ 360 (452)
.+..........+.+.....++...++.... +++.+.++.+++++++.+.|.+++++.+..++ ... ..++.+.
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~ 302 (424)
T 2po3_A 227 FGFDLPGGSPAGGTNAKMSEAAAAMGLTSLD----AFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVE 302 (424)
T ss_dssp TTTTCTTCCTTCCCBCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEE
T ss_pred cCccccccccccCcCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEE
Confidence 1110000000112221112222233333322 46677888888888998888877677766532 211 2445566
Q ss_pred cCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC-CCCc-------cceEEecccccCCHHHHHHH
Q 012991 361 LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK-DGII-------TGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~iRis~~~~~t~~di~~l 432 (452)
+++.. .+.+..++.+.|.+ .||.+...+.+.... ....... .... ...+|++++.++|++|++++
T Consensus 303 ~~~~~---~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~---~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~ 375 (424)
T 2po3_A 303 IDEAT---TGIHRDLVMEVLKA-EGVHTRAYFSPGCHE---LEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRV 375 (424)
T ss_dssp ECHHH---HSSCHHHHHHHHHH-TTEECBCTTCSCGGG---STTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHH
T ss_pred ECCcc---chhhHHHHHHHHHH-CCCceecccCCcccc---chhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHH
Confidence 64100 02457788898866 599997533211000 0000000 0001 12388888889999999999
Q ss_pred HHHHHHHHhcc
Q 012991 433 RDAVILLVEEG 443 (452)
Q Consensus 433 ~~~l~~~~~~~ 443 (452)
+++|+++++..
T Consensus 376 ~~~L~~~~~~~ 386 (424)
T 2po3_A 376 ADLLRLCATRG 386 (424)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999988653
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-26 Score=228.64 Aligned_cols=339 Identities=12% Similarity=0.061 Sum_probs=212.7
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-----CCC-CCCcEEEecChhHHHHHHHHHhhcccccC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-----NAD-DVGEISLVDNATTAAAIVLQQIGRGFTEG 125 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~ 125 (452)
|..+.+++.+.+.... +.....|....+..++|+.+++++ |.+ ++++|++|+|+++++.+++.++
T Consensus 103 P~~~~~~~~~~l~~~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l------- 173 (498)
T 3ihj_A 103 PEDAKKRARRILQACG--GNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL------- 173 (498)
T ss_dssp CHHHHHHHHHHHHHC------------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHHHhcc--CCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH-------
Confidence 5555566555554321 111122333445566666666665 343 3689999999999999999987
Q ss_pred CCCCC----CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 126 RFHRN----DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 126 ~~~~g----~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
.++| ++|+++.|.|++....+. ..|.+++.++... +....+ +++|++.+++... ..++++|++++++
T Consensus 174 -~~~gd~~~d~Vlv~~p~y~~~~~~~~----~~g~~~v~~~~~~--~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~ 245 (498)
T 3ihj_A 174 -VSGGGKSRTGVMIPIPQYPLYSAVIS----ELDAIQVNYYLDE--ENCWALNVNELRRAVQEAKD-HCDPKVLCIINPG 245 (498)
T ss_dssp -CCCCGGGSEEEEEEESCCTHHHHHHH----HTTCEEEEEECBG--GGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSC
T ss_pred -cCCCCCCCCEEEEeCCCchhHHHHHH----HcCCEEEEeeccc--cccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCC
Confidence 3555 499999999998766654 4599999996521 111133 8999999864321 1268999999999
Q ss_pred CCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc-----cccccc----------Cc-cEEEEcCcccCcCCCC-
Q 012991 201 SMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK-----IDVKEI----------GA-DFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 201 n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~~~~~~----------~~-d~~~~s~~K~l~g~~G- 260 (452)
||||.+++ +++|+++|++||+ ++|+|++++..... .++... .. .+++.|+||.+.|.+|
T Consensus 246 NPTG~v~s~~~l~~i~~la~~~~~-~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~ 324 (498)
T 3ihj_A 246 NPTGQVQSRKCIEDVIHFAWEEKL-FLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGY 324 (498)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSS
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCc-EEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCccc
Confidence 99999987 4568999999999 79999998764331 111111 11 2567799998645444
Q ss_pred -cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH-----------HHHHhhcCHHHHHH
Q 012991 261 -VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT-----------FVSRFEGGIDGIMQ 325 (452)
Q Consensus 261 -~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-----------~~~~~~~g~~~~~~ 325 (452)
+|++++ ++++++. + .... . ....++...+.++..+++ +.. ..+.+++
T Consensus 325 R~G~~~~~~~~~~l~~~-l-~~~~-----------~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~----~~~~~~~ 386 (498)
T 3ihj_A 325 RGGYMEVINLHPEIKGQ-L-VKLL-----------S-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSR----EKESVLG 386 (498)
T ss_dssp CCEEEEEESCCHHHHHH-H-HHHH-----------H-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHH----HHHHHHH
T ss_pred ceEEEEEecCCHHHHHH-H-HHHH-----------h-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHH----HHHHHHH
Confidence 688873 5555553 1 1110 0 012333344444443331 222 2456778
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEc--CCccc---cCChhhHHHH-HHHHhhhcceEeeecccCCCCCC
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL--PSRLR---VMGEDDALRL-RGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~l-~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
+++++++++.+.|.+++++++..++. +.++|+.+ |.... ...+.+.+++ +..+.+++||.+.++..+...
T Consensus 387 ~l~~~~~~l~~~L~~~~g~~~~~p~g--g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~-- 462 (498)
T 3ihj_A 387 NLAKKAKLTEDLFNQVPGIHCNPLQG--AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR-- 462 (498)
T ss_dssp HHHHHHHHHHHHHHTSTTEECCCCCB--SSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC--
T ss_pred HHHHHHHHHHHHHhcCCCcEecCCCe--EEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC--
Confidence 88899999999999887888776654 45555443 21000 0002233443 344334469999887766321
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
...+++|+++. .+.++++.++++|++++++.
T Consensus 463 -----------~~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 463 -----------EGTYHFRMTIL--PPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp -----------TTCCBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHH
Confidence 23568999996 58999999999999988653
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=220.25 Aligned_cols=320 Identities=13% Similarity=0.154 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc-cc-cCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG-FT-EGR 126 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~-~~-~~~ 126 (452)
+..++.+.+++.+.+.... .... ....+..+++++++++++|. +++++++|||+|+..++.++... +. ...
T Consensus 51 G~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~~~l~~~la~~~g~---~~v~~~~~gt~a~~~al~~~~~~~~~~~~~ 123 (392)
T 3ruy_A 51 GHRHPKIINALIDQANRVT-LTSR---AFHSDQLGPWYEKVAKLTNK---EMVLPMNTGAEAVETAIKTARRWAYDVKKV 123 (392)
T ss_dssp CBTCHHHHHHHHHHHTTCS-CCCT---TSEETTHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHHHHHhcc-cccc---ccCCHHHHHHHHHHHHhcCC---CEEEEeCcHHHHHHHHHHHHHHhhhhccCC
Confidence 3457779999988765421 1111 12345678999999999984 69999999999999999866321 00 000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhcC---------cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRAG---------GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g---------~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
-..+++|++..++|++.......+....+ ..+..+ +.++ +++|++++ .+++++|+++
T Consensus 124 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l------~~~~~~v~~~ 189 (392)
T 3ruy_A 124 EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PYGD----LEALKAAI------TPNTAAFILE 189 (392)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEE----CTTC----HHHHHHHC------CTTEEEEEEC
T ss_pred CCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeee----Cccc----HHHHHHHh------ccCeEEEEEe
Confidence 12367999999999876555433211000 124444 3222 78899998 5789999999
Q ss_pred ccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC-CCcEEEEEe
Q 012991 198 HITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP-PSVAFLYCR 267 (452)
Q Consensus 198 ~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~~~ 267 (452)
+++||||.+.| +++|.++|++||+ ++|+|++|+ ++.. ..+.....+|++++| |++.|+ ..+|+++++
T Consensus 190 ~~~nptG~~~~~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~ 266 (392)
T 3ruy_A 190 PIQGEAGINIPPAGFLKEALEVCKKENV-LFVADEIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAAN 266 (392)
T ss_dssp SSBSTTTSBCCCTTHHHHHHHHHHTTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEEC
T ss_pred CccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeechhCCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEEC
Confidence 99999999998 9999999999999 899999995 3321 223333457888665 987663 337999998
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + .+.. .+ ...+.+...+.++.++++.+.. +.++++++++++++.+.|.++ +....
T Consensus 267 ~~~~~~-~-~~~~---~~--------~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~-~~~~~ 327 (392)
T 3ruy_A 267 RDILGV-F-EPGS---HG--------STFGGNPLACAVSIAALEVLEE-----EKLTERSLQLGEKLVGQLKEI-DNPMI 327 (392)
T ss_dssp HHHHTT-C-CTTS---SC--------CSSTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHTTC-CCTTE
T ss_pred HHHHhh-h-ccCC---cC--------CCCCCCHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 877765 2 2210 00 0123344444455555555432 567788889999999999876 32222
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
......++++++.++ . +..++.+.|.+ +||.+.++ .++++|++++..+|++
T Consensus 328 ~~~~~~g~~~~~~~~-------~-~~~~l~~~l~~-~gi~v~~~--------------------~~~~iRi~~~~~~~~~ 378 (392)
T 3ruy_A 328 TEVRGKGLFIGIELN-------E-PARPYCEQLKA-AGLLCKET--------------------HENVIRIAPPLVISEE 378 (392)
T ss_dssp EEEEEETTEEEEEES-------S-CSHHHHHHHHT-TTEECCCB--------------------TTTEEEECCCTTCCHH
T ss_pred eEEEeeeeEEEEEEc-------c-hHHHHHHHHHH-CCcEEecC--------------------CCCEEEEECCCCCCHH
Confidence 112223677777775 2 55788899976 59998632 2479999999889999
Q ss_pred HHHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILLV 440 (452)
Q Consensus 428 di~~l~~~l~~~~ 440 (452)
|+++++++|++++
T Consensus 379 ~i~~~~~~l~~~l 391 (392)
T 3ruy_A 379 DLEWAFQKIKAVL 391 (392)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=219.57 Aligned_cols=306 Identities=14% Similarity=0.122 Sum_probs=217.6
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC---CCCCCcEEEecChhHHHHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN---ADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~i~~t~g~t~a~~~ 113 (452)
+.+++|+.+..+ +.|+.+.+++.+.+... ... .+.. ....++++.++++++ ++ +++|++|+|+++++.+
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~--~y~~-~~~~~lr~~la~~~~~~~~~-~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSD---ALR--IYYD-SPDEELIEKILSYLDTDFLS-KNNVSVGNGADEIIYV 91 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGG---GGG--SCCC-SSCHHHHHHHHHHHTCSSCC-GGGEEEESSHHHHHHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhh---hhh--cCCC-CchHHHHHHHHHHcCCCCCC-HHHEEEcCChHHHHHH
Confidence 457899988775 56788999988765211 111 1211 237889999999999 75 6899999999999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~ 192 (452)
++.+ + ||+|+++ |+|++....+ +..|.+++.++. ++++.+ ++++ ++++
T Consensus 92 ~~~~---------~--gd~Vl~~-p~y~~~~~~~----~~~g~~~~~v~~----~~~~~~d~~~l-----------~~~~ 140 (335)
T 1uu1_A 92 MMLM---------F--DRSVFFP-PTYSCYRIFA----KAVGAKFLEVPL----TKDLRIPEVNV-----------GEGD 140 (335)
T ss_dssp HHHH---------S--SEEEECS-SSCHHHHHHH----HHHTCEEEECCC----CTTSCCCCCCC-----------CTTE
T ss_pred HHHH---------h--CCcEEEC-CCcHHHHHHH----HHcCCeEEEecc----CCCCCCCHHHc-----------CCCC
Confidence 9884 3 7899999 9999876554 445999988854 222111 2222 3679
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-c-cc-ccccCccEEEEcCcccCcCCCC--cEEEEEe
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-K-ID-VKEIGADFYVSNLHKWFFCPPS--VAFLYCR 267 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~-~~-~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~ 267 (452)
+|++++|+||||.++|.+++.++++..| + +|+|++|+.... + .+ +...+.++++.|++|+ +|++| +|+++++
T Consensus 141 ~v~l~~p~nptG~~~~~~~l~~l~~~~~-~-li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~ 217 (335)
T 1uu1_A 141 VVFIPNPNNPTGHVFEREEIERILKTGA-F-VALDEAYYEFHGESYVDFLKKYENLAVIRTFSKA-FSLAAQRVGYVVAS 217 (335)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTTC-E-EEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTT-TTCGGGCCEEEEEC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCC-E-EEEECcchhhcchhHHHHhhhCCCEEEEecchhh-cCCcccCeEEEEeC
Confidence 9999999999999999999999999887 4 999999874211 1 22 2234567899999997 56556 7999998
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + .... . ..+.+...+.++.++++... ..+..+++++++++++.+.|.+. ++.+.
T Consensus 218 ~~~~~~-l-~~~~-----------~--~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 277 (335)
T 1uu1_A 218 EKFIDA-Y-NRVR-----------L--PFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREM-GYRIT 277 (335)
T ss_dssp HHHHHH-H-HHHS-----------C--TTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHH-TCCBC
T ss_pred HHHHHH-H-HHhc-----------C--CCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHC-CcEEc
Confidence 877664 1 1110 0 02334444444444544321 46778888999999999999987 77654
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
++. ++++++.++ ..+..++.+.|.++ ||.+.. .++++|+|++ +.+
T Consensus 278 -~~~--~~~~~~~~~-------~~~~~~~~~~l~~~-gi~v~~---------------------~~~~iRis~~---~~~ 322 (335)
T 1uu1_A 278 -DSR--GNFVFVFME-------KEEKERLLEHLRTK-NVAVRS---------------------FREGVRITIG---KRE 322 (335)
T ss_dssp -CCC--SSEEEEECC-------THHHHHHHHHHHHH-TEEEEE---------------------ETTEEEEECC---CHH
T ss_pred -CCC--CeEEEEECC-------CCCHHHHHHHHHHC-CEEEEE---------------------CCCeEEEEeC---CHH
Confidence 333 668888886 24667888988764 999864 1368999996 578
Q ss_pred HHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILL 439 (452)
Q Consensus 428 di~~l~~~l~~~ 439 (452)
|+++++++|+++
T Consensus 323 ~i~~~~~~l~~~ 334 (335)
T 1uu1_A 323 ENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhh
Confidence 899999998753
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=220.15 Aligned_cols=352 Identities=12% Similarity=0.060 Sum_probs=225.2
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.+.|+.+.+++.+.+... ....+ ...+..++.+++++.+++++|++ ++++++|||+|+.+++.++ .+
T Consensus 12 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~g~~~l~~~l~~~la~~~g~~---~~i~~~~gt~al~~~~~~~-------~~ 79 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSN--RWAISGYWTGEESMERKFAKAFADFNGVP---YCVPTTSGSTALMLALEAL-------GI 79 (418)
T ss_dssp SCCCHHHHHHHHHHHHHT--CCSTTSBCCSSCCHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHT-------TC
T ss_pred CCCCHHHHHHHHHHHhcC--CccccCcccCCHHHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHc-------CC
Confidence 455788999998887652 11111 11233456889999999999995 5788888999999999976 24
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
++||+|+++.++|+++..++. ..|.+++.++++. +++.+ ++++++.+ .+++++|+++ |++|..
T Consensus 80 ~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~~~~---~~~~~d~~~l~~~i------~~~~~~v~~~---~~~G~~ 143 (418)
T 2c81_A 80 GEGDEVIVPSLTWIATATAVL----NVNALPVFVDVEA---DTYCIDPQLIKSAI------TDKTKAIIPV---HLFGSM 143 (418)
T ss_dssp CTTCEEEEESSSCTHHHHHHH----HTTCEEEEECBCT---TTCSBCHHHHGGGC------CTTEEEECCB---CCTTCC
T ss_pred CCcCEEEECCCccHhHHHHHH----HcCCEEEEEecCC---CCCCcCHHHHHHhh------CCCCeEEEEe---CCcCCc
Confidence 789999999999999877654 4699999995421 12334 88999888 5688998875 478999
Q ss_pred ccHHHHHHHHHHcCCCEEEEecccccCCc-cc-cccccCccEEEEcC--cccCcCCCCcEEEEEe-cCccccCCCCCcee
Q 012991 207 IPVRKLVKICRDEGVDQVFVDAAHAMGSI-KI-DVKEIGADFYVSNL--HKWFFCPPSVAFLYCR-KSILSSDMHHPVVS 281 (452)
Q Consensus 207 ~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~-~~~~~~~d~~~~s~--~K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~ 281 (452)
.++++|.++|+++|+ ++|+|++|+.+.. .. ....+ .|+++.|+ ||+++++ ..|+++.+ +++++. + .+...
T Consensus 144 ~~~~~i~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~-~-~~~~~ 218 (418)
T 2c81_A 144 ANMDEINEIAQEHNL-FVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFEL-I-QQLRA 218 (418)
T ss_dssp CCHHHHHHHHHHTTC-EEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHH-H-HHHHB
T ss_pred ccHHHHHHHHHHCCC-EEEEECcccccCccCCEecccc-cceEEEeccCCcccCCC-CeEEEEECCHHHHHH-H-HHHHH
Confidence 999999999999999 8999999998863 11 11111 24555555 9986543 46888875 455443 1 11100
Q ss_pred ccCCCCc---cc---cccc--ccccCccc----cccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 282 HEFGNGL---PI---ESAW--IGTRDYSA----QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 282 ~~~~~~~---~~---~~~~--~~~~~~~~----~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
.+... +. ..+. .+++.... +..+.+++..... ++++.+.++.+++++++.+.|.+++++++..+
T Consensus 219 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 294 (418)
T 2c81_A 219 --DSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL--QELDDKNAIREKNAMFLNDALSKIDGIKVMKR 294 (418)
T ss_dssp --TTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCC
T ss_pred --hCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCcccCCC
Confidence 00000 00 0000 01111111 1112333332221 25778888888999999999988777777643
Q ss_pred ccc--c-c-ceEEEEcCCccccCChhhHHHHHHHHhhhcceE---eeecccCCCCCCCCCCCCC---CC-----------
Q 012991 350 PEI--C-A-AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVE---VPIHYQAPKDDGQPQAGAR---DK----------- 408 (452)
Q Consensus 350 ~~~--~-~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~---v~~~~~~~~~~~~~~~~~~---~~----------- 408 (452)
+.. . . .++.+.+++.. ..+.+..++.+.|.+++||. ++.++.+.+. ...+.. ..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~ 369 (418)
T 2c81_A 295 PPQVSRQTYYGYVFRFDPVK--FGGLNADQFCEILREKLNMGTFYLHPPYLPVHK---NPLFCPWTKNRYLKSVRKTEAY 369 (418)
T ss_dssp CTTEEECCCSEEEEEECGGG--TTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGG---CTTCCGGGCTTSCHHHHCCHHH
T ss_pred CCCCcccccEEEEEEEcccc--ccccCHHHHHHHHHHcCCCCccccccccccccc---Cchhcccccccccccccccccc
Confidence 321 1 2 34446665100 01346788999997655999 8765532110 000000 00
Q ss_pred ---CCC------ccceEEecccccC-CHHHHHHHHHHHHHHHhc
Q 012991 409 ---DGI------ITGYARISHQVYN-TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ---~~~------~~~~iRis~~~~~-t~~di~~l~~~l~~~~~~ 442 (452)
... ..+.||++++.++ |.+||++++++|++++++
T Consensus 370 ~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 370 WRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred cccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 000 1368999999999 999999999999999875
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=219.40 Aligned_cols=334 Identities=15% Similarity=0.091 Sum_probs=216.1
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND 131 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~ 131 (452)
++.+.+++.+.+... .+.......++++.++++++.+ ++++++|||+|+..++.++ .+++|+
T Consensus 43 ~~~v~~a~~~~~~~~--------~y~~~~~~~~l~~~la~~~~~~---~~v~~~~Gt~a~~~~l~~~-------~~~~gd 104 (399)
T 2oga_A 43 RAETDAAIARVLDSG--------RYLLGPELEGFEAEFAAYCETD---HAVGVNSGMDALQLALRGL-------GIGPGD 104 (399)
T ss_dssp HHHHHHHHHHHHHHT--------CCSSSHHHHHHHHHHHHHTTSS---EEEEESCHHHHHHHHHHHT-------TCCTTC
T ss_pred CHHHHHHHHHHHhcC--------CCCCchhHHHHHHHHHHHHCCC---eEEEecCHHHHHHHHHHHh-------CCCCcC
Confidence 366888888876531 1222356789999999999984 6788999999999999876 247899
Q ss_pred EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH
Q 012991 132 TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR 210 (452)
Q Consensus 132 ~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~ 210 (452)
+|+++.++|++....+ ...|.+++.++++. +.+.+ +++|++++ .+++++|++ +||+|.+.|++
T Consensus 105 ~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~---~~~~~d~~~l~~~i------~~~~~~v~~---~n~tG~~~~l~ 168 (399)
T 2oga_A 105 EVIVPSHTYIASWLAV----SATGATPVPVEPHE---DHPTLDPLLVEKAI------TPRTRALLP---VHLYGHPADMD 168 (399)
T ss_dssp EEEEESSSCTHHHHHH----HHTTCEEEEECBCS---SSSSBCHHHHHHHC------CTTEEEECC---BCGGGCCCCHH
T ss_pred EEEECCCccHHHHHHH----HHCCCEEEEEecCC---CCCCcCHHHHHHhc------CCCCeEEEE---eCCcCCccCHH
Confidence 9999999999976654 44699999996521 12233 89999998 567888874 57899999999
Q ss_pred HHHHHHHHcCCCEEEEecccccCCccccccccC--ccEEEEcC--cccCcCCCC-cEEEEEe-cCccccCCCCCceeccC
Q 012991 211 KLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG--ADFYVSNL--HKWFFCPPS-VAFLYCR-KSILSSDMHHPVVSHEF 284 (452)
Q Consensus 211 ~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~--~d~~~~s~--~K~l~g~~G-~G~l~~~-~~~~~~~l~~~~~~~~~ 284 (452)
+|.++|+++|+ ++|+|++++.|... +...++ .|++++|+ +|++ |++| .|+++.+ +++++. + .+... .
T Consensus 169 ~i~~l~~~~~~-~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~-~~~G~~g~~~~~~~~~~~~-l-~~~~~--~ 241 (399)
T 2oga_A 169 ALRELADRHGL-HIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNL-GCFGDGGAVVTGDPELAER-L-RMLRN--Y 241 (399)
T ss_dssp HHHHHHHHHTC-EECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSS-CCSSCCEEEEESCHHHHHH-H-HHHHB--T
T ss_pred HHHHHHHHcCC-EEEEECcccccCcc-CCeecccccCEEEEeCCCCccC-CcCCceEEEEeCCHHHHHH-H-HHHHh--c
Confidence 99999999999 79999999987542 322233 69999998 5975 4433 5777775 565543 1 11100 1
Q ss_pred CCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccce-EEEEcCC
Q 012991 285 GNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAM-VMVGLPS 363 (452)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-~~~~~~~ 363 (452)
+..........+.+.....+++..+...+. .++.+.++.+++++++.+.|.+++++.+...+....++ +.+.++
T Consensus 242 g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~- 316 (399)
T 2oga_A 242 GSRQKYSHETKGTNSRLDEMQAAVLRIRLA----HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVR- 316 (399)
T ss_dssp TCSSTTCCCSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEE-
T ss_pred CccccccccccccCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEE-
Confidence 110000000112111111222222223333 34556777788888999999887777665333221211 123332
Q ss_pred ccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC-----C------ccceEEecccccCCHHHHHHH
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG-----I------ITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~iRis~~~~~t~~di~~l 432 (452)
..+..++.+.|.+ .||.++.++...... .......+ . ..+++|++++.++|++|++++
T Consensus 317 ------~~~~~~l~~~L~~-~gI~v~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~ 385 (399)
T 2oga_A 317 ------TERRDELRSHLDA-RGIDTLTHYPVPVHL----SPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRV 385 (399)
T ss_dssp ------CSSHHHHHHHHHH-TTBCCBCSCSSCGGG----SHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHH
T ss_pred ------CCCHHHHHHHHHH-CCCceecCCCCcccc----chhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHH
Confidence 1256789999976 499987543210000 00000000 0 136899999999999999999
Q ss_pred HHHHHHHHhc
Q 012991 433 RDAVILLVEE 442 (452)
Q Consensus 433 ~~~l~~~~~~ 442 (452)
+++|++++++
T Consensus 386 ~~~l~~~~~~ 395 (399)
T 2oga_A 386 IDAVREWAER 395 (399)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=229.67 Aligned_cols=338 Identities=13% Similarity=0.106 Sum_probs=230.9
Q ss_pred CCeEEeccCCC-C-CCcHHH--HHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-----CCCCCCc---EEEec
Q 012991 38 HGVARINNGSF-G-SCPKSV--LADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-----NADDVGE---ISLVD 105 (452)
Q Consensus 38 ~~~~~l~~~~~-~-~~p~~v--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~~~~~---i~~t~ 105 (452)
+.++.|..+.+ . ..|+.+ .+++.+.+.. .....|....+..++++.+++++ +++ +++ |++|+
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~~~~i~~t~ 120 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTP-----DEIFPYAPPQGIEELRDLWQQKMLRDNPELS-IDNMSRPIVTN 120 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCG-----GGTSSCCCTTCCHHHHHHHHHHHHHHCTTCC-GGGBCCCEEES
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCc-----ccccccCCCCCCHHHHHHHHHHHhccCcccC-CCccceEEEcC
Confidence 56788887765 3 223334 5554433211 01122333345688899999998 775 678 99999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh-cCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR-AGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
|+++|+.+++.++ +++||+|++++++|++....+ .. .|.+++.++++. . ++.+ +++|++++++
T Consensus 121 g~~~al~~~~~~l--------~~~gd~Vl~~~p~y~~~~~~~----~~~~g~~~~~~~~~~--~-~~~~d~~~l~~~l~~ 185 (430)
T 2x5f_A 121 ALTHGLSLVGDLF--------VNQDDTILLPEHNWGNYKLVF----NTRNGANLQTYPIFD--K-DGHYTTDSLVEALQS 185 (430)
T ss_dssp HHHHHHHHHHHHH--------CCTTCEEEEESSCCTHHHHHH----TTTTCCEEEEECCBC--T-TSCBCSHHHHHHHHH
T ss_pred CchHHHHHHHHHH--------hCCCCEEEEcCCcCccHHHHH----HHhcCCeEEEEeccC--c-cCCcCHHHHHHHHHh
Confidence 9999999999987 478999999999999875543 45 699999986531 1 1223 7889988863
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHH-----cCCCEEEEecccccCCc------cc--cccc-cCc--
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRD-----EGVDQVFVDAAHAMGSI------KI--DVKE-IGA-- 244 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~-----~~~~~~ivD~a~~~g~~------~~--~~~~-~~~-- 244 (452)
. ..++++|++++|+||||.++| +++|+++|++ +|+ ++|+|++++.... ++ ++.. .+.
T Consensus 186 ~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (430)
T 2x5f_A 186 Y---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKV-IAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAI 261 (430)
T ss_dssp C---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEE-EEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTE
T ss_pred c---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCE-EEEEehhcccccCCcccchHHHHHHhhccCCcc
Confidence 2 247899999999999999998 7889999999 999 8999999875322 11 2222 234
Q ss_pred -cEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH-HHHHhh
Q 012991 245 -DFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT-FVSRFE 317 (452)
Q Consensus 245 -d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-~~~~~~ 317 (452)
++++.|+||+ +|++| +|++++ ++++++. + ...... .......+++...+.++.++++ .. .+.
T Consensus 262 ~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~-l-~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~ 330 (430)
T 2x5f_A 262 LPIRLDGATKE-FFAWGFRVGFMTFGTSDQTTKEV-L-EAKVKG-------LIRSNISSGPLPTQSAVKHVLKNNK-QFD 330 (430)
T ss_dssp EEEEEEEHHHH-TTCGGGCCEEEEEBCCCHHHHHH-H-HHHHHH-------HHHTTTSSCCHHHHHHHHHHHHSCH-HHH
T ss_pred eEEEEEecccC-CCCCCCCeEEEEEecCCHHHHHH-H-HHHHhh-------hhhcccCCCChHHHHHHHHHHccCh-HHH
Confidence 6788999997 56556 699999 7777664 1 111000 0000113445555555555555 21 110
Q ss_pred cCHHHHHHHHHHHHHHHHHHHH----HHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeeccc
Q 012991 318 GGIDGIMQRNHEQALKMARMLA----NAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ 393 (452)
Q Consensus 318 ~g~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~ 393 (452)
..++.++++++++++++.+.|. +. ++.+..+.. +.++++.++ +.+..++.+.|.+++||.+..+
T Consensus 331 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~--g~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g-- 398 (430)
T 2x5f_A 331 KEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNS--GYFMAIKVH-------DVDPEALRKHLIDKYSIGVIAL-- 398 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCB--SSEEEEEES-------SSCHHHHHHHHHHHHCEECEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCc--eEEEEeCCC-------CCCHHHHHHHHHHhCCEEEecC--
Confidence 1245578888899999999987 33 566554433 556888875 3456789999876359998643
Q ss_pred CCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 394 APKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|+|++. ++++++++++++|++++++
T Consensus 399 ------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 399 ------------------NATDIRIAFSC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp ------------------SSSEEEEEGGG-SCGGGHHHHHHHHHHHHHH
T ss_pred ------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 13689999985 4899999999999998764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=219.73 Aligned_cols=342 Identities=11% Similarity=0.066 Sum_probs=219.8
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
++.++.+.+++.+.+......+...+ ..+...+++++++++++.+ +++|+||+|||+|++.++.++. .+....-.
T Consensus 58 g~~~p~v~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~la~~~~~~-~~~v~~~~ggtea~~~ai~~~~-~~~~~~g~ 132 (429)
T 1s0a_A 58 GYNHPQLNAAMKSQIDAMSHVMFGGI---THAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMAL-QYWQAKGE 132 (429)
T ss_dssp CBSCHHHHHHHHHHHHHCSCCCCSSE---ECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHHH-HHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhccccccccc---CCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHH-HHhcccCC
Confidence 34678899999988765322111111 2344677888999999875 7899999999999999998652 11000002
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHH-------hc---CcEEEEEeCCCCC--CChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVT-------RA---GGSVVEVQLPFPL--ASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~-------~~---g~~v~~~~~~~~~--~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++++|++.++.|++.......+.. .. ...+..++.+... +..+.. +++|++++++. .+++++|+
T Consensus 133 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi 209 (429)
T 1s0a_A 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVI 209 (429)
T ss_dssp CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEE
T ss_pred CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEEEE
Confidence 589999999988764433321100 00 0134555432100 011223 78888888532 25678888
Q ss_pred Eecc-CCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEE
Q 012991 196 IDHI-TSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFL 264 (452)
Q Consensus 196 ~~~~-~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l 264 (452)
++.. +|++|.+.| +++|+++|++||+ ++|+|++|+ +|... .+.....+|++++ +|+++++ .++|++
T Consensus 210 ~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~-~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~--sK~l~~G~~~iG~~ 286 (429)
T 1s0a_A 210 IEPIVQGAGGMRMYHPEWLKRIRKICDREGI-LLIADEIATGFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSAT 286 (429)
T ss_dssp ECSSEECTTTCEEBCTHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEEE
T ss_pred EeecccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeehhhCCcccchHHHhhhcCCCCCEEEe--cccccCCCccceEE
Confidence 8877 899998877 9999999999999 899999997 44321 2222345787754 5987776 678999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. +.... ... .....+.+.+...+.+..++++.+.+ +.+.++++++++++.+.|.++...
T Consensus 287 ~~~~~~~~~-l~~~~-----~~~--~~~~~t~~~n~~~~~a~~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~ 353 (429)
T 1s0a_A 287 LTTREVAET-ISNGE-----AGC--FMHGPTFMGNPLACAAANASLAILES-----GDWQQQVADIEVQLREQLAPARDA 353 (429)
T ss_dssp EECHHHHHH-HHTST-----TSS--CSCCCTTTTCHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred EeCHHHHHH-hhcCC-----Ccc--cccCCCCCCCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhcC
Confidence 998877654 21100 000 00000123344455555666666553 246778888999999999875321
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.........+.++++.++ ...+..++.+.|.+ .||.+.. .++++|++++..+
T Consensus 354 ~~~~~~~~~g~~~~~~~~------~~~~~~~l~~~l~~-~Gi~v~~---------------------~~~~iRis~~~~~ 405 (429)
T 1s0a_A 354 EMVADVRVLGAIGVVETT------HPVNMAALQKFFVE-QGVWIRP---------------------FGKLIYLMPPYII 405 (429)
T ss_dssp TTEEEEEEETTEEEEEES------SCBCHHHHHHHHHH-TTEECCC---------------------BTTEEEECCCTTC
T ss_pred CCEEEEEEeeEEEEEEEC------CcccHHHHHHHHHH-CCCEEec---------------------cCCEEEEECCCCC
Confidence 111111123567888876 23456788888876 4999852 1268999999889
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
|++|+++++++|+++++.
T Consensus 406 t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 406 LPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp CHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998754
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=221.58 Aligned_cols=309 Identities=17% Similarity=0.146 Sum_probs=206.3
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
....+..+++++++++++|.+ +.++++|||+|+++++. + +++||+|+++.++|++....+...++..|
T Consensus 51 ~~~~~~~~~lr~~la~~~g~~---~~i~~~sGt~a~~~al~-~--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G 118 (393)
T 1n8p_A 51 RSQNPNRENLERAVAALENAQ---YGLAFSSGSATTATILQ-S--------LPQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp TTCCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHH-T--------SCSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred cCCChhHHHHHHHHHHHhCCC---cEEEECChHHHHHHHHH-H--------cCCCCEEEEeCCCchHHHHHHHHHHHHcC
Confidence 334567899999999999985 56666777999999998 6 47899999999999987666654456679
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc----CCCEEEEecccc
Q 012991 156 GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE----GVDQVFVDAAHA 231 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~----~~~~~ivD~a~~ 231 (452)
.+++.+ +.+ . +++++++ .+++++|++++++||+|.+.|+++|.++|+++ |+ ++|+|++|+
T Consensus 119 ~~v~~v----~~~----d-~~l~~~i------~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~-~livD~a~~ 182 (393)
T 1n8p_A 119 VETSFT----NDL----L-NDLPQLI------KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDV-ILVVDNTFL 182 (393)
T ss_dssp SCCEEE----SSH----H-HHHHHHS------CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTC-EEEEECTTT
T ss_pred cEEEEe----CCC----h-HHHHHhc------ccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCC-EEEEeCCcc
Confidence 999998 432 2 6788888 56899999999999999999999999999999 99 899999998
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC--c-EEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHH
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS--V-AFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIP 307 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~-G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (452)
.+... +...+++|+++.|+||+ +|++| + |+++++ +++++. + .... ..+.++.+.... .
T Consensus 183 ~~~~~-~~~~~~~di~~~S~sK~-~g~~G~rigG~~~~~~~~~~~~-l-~~~~-----------~~~g~~~~~~~~---~ 244 (393)
T 1n8p_A 183 SPYIS-NPLNFGADIVVHSATKY-INGHSDVVLGVLATNNKPLYER-L-QFLQ-----------NAIGAIPSPFDA---W 244 (393)
T ss_dssp HHHHC-CGGGGTCSEEEEETTTT-TTCSSCCCCEEEEESCHHHHHH-H-HHHH-----------HHHCCCCCHHHH---H
T ss_pred ccccC-CHHHcCCeEEEEECccc-ccCCCCceeEEEEeCCHHHHHH-H-HHHH-----------HhcCCCCCHHHH---H
Confidence 77653 44455799999999996 67777 6 888885 455554 1 1110 000111111111 1
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CC-cCCC-----c---------cc-c-cceEEEEcCCccccCC
Q 012991 308 SAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TS-LGSP-----P---------EI-C-AAMVMVGLPSRLRVMG 369 (452)
Q Consensus 308 ~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~-~~~~-----~---------~~-~-~~~~~~~~~~~~~~~~ 369 (452)
.++..+. ......++..+++..+.+.|.+.+. +. +..| + .. . +++++|.++. .
T Consensus 245 ~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~-----~ 315 (393)
T 1n8p_A 245 LTHRGLK----TLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG-----G 315 (393)
T ss_dssp HHHHHHT----THHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS-----C
T ss_pred HHHhccc----hHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC-----c
Confidence 1222222 2333455556677777777766533 21 1111 1 11 3 6789998862 1
Q ss_pred hhhHHHHHHHHhhhcceEeeecccCCC-----CCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 370 EDDALRLRGHLRVRFGVEVPIHYQAPK-----DDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 370 ~~~~~~l~~~L~~~~gI~v~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..+...+.+.|. .+++.+..+..+.. .-.++... ...+.+..++.+|+|++..+++++|+.+.++|+++.
T Consensus 316 ~~~~~~~l~~l~-~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 316 AEAASKFASSTR-LFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp HHHHHHHHHHCS-SSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC-cceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 235566777764 34666644322110 00011000 111223446899999999999999999999998753
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=219.66 Aligned_cols=322 Identities=15% Similarity=0.126 Sum_probs=206.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++++++++|.+ ..+++++|++|+.+++.++ +++||+|+++++.|++....+...+..
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~---~~v~~~sG~~Ai~~al~al--------~~~Gd~Vi~~~~~y~~~~~~~~~~~~~ 144 (430)
T 3ri6_A 76 YSRSSNPTVEDLEQRLKNLTGAL---GVLALGSGMAAISTAILTL--------ARAGDSVVTTDRLFGHTLSLFQKTLPS 144 (430)
T ss_dssp ----CCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHHHTHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEcCCCchhHHHHHHHHHHH
Confidence 44455677899999999999985 4677778899999999887 589999999999999988877655678
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.+
T Consensus 145 ~G~~~~~v~~----~d----~~~l~~ai------~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~-~livD~a~~~~ 209 (430)
T 3ri6_A 145 FGIEVRFVDV----MD----SLAVEHAC------DETTKLLFLETISNPQLQVADLEALSKVVHAKGI-PLVVDTTMTPP 209 (430)
T ss_dssp TTCEEEEECT----TC----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTC-CEEEECTTSCT
T ss_pred cCCEEEEeCC----CC----HHHHHHhh------CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 33 68899998 5789999999999999999999999999999999 79999999987
Q ss_pred CccccccccCccEEEEcCcccCcCC---CCcEEEEEecCcccc-CCCCCceeccCCCCccc------ccccccccCcccc
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCP---PSVAFLYCRKSILSS-DMHHPVVSHEFGNGLPI------ESAWIGTRDYSAQ 303 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~---~G~G~l~~~~~~~~~-~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 303 (452)
.. .+....++|+++.|++|+++|+ . .|+++.+.+.... .-..+.+...+|..... .....|... ..+
T Consensus 210 ~~-~~~~~~g~div~~S~sK~l~g~g~~~-gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~-~~~ 286 (430)
T 3ri6_A 210 YL-LEAKRLGVDIEVLSSTKFISGGGTSV-GGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSL-SPH 286 (430)
T ss_dssp TT-CCGGGGTCSEEEEECCCEEETTEEEC-CEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCC-CHH
T ss_pred cc-CChHHcCCEEEEECCcccccCCCCce-EEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCC-CHH
Confidence 75 4445568999999999986654 3 3666644331110 00000000000000000 000011111 111
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCcc-------------cccc-eEEEEcCCccccC
Q 012991 304 LVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPPE-------------ICAA-MVMVGLPSRLRVM 368 (452)
Q Consensus 304 ~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~-------------~~~~-~~~~~~~~~~~~~ 368 (452)
....++..++ .+....++..+++.++.+.|.+.+++. +..|.- ..++ +++|.++
T Consensus 287 -~a~l~l~~l~----~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~------ 355 (430)
T 3ri6_A 287 -NAYLQSLGLE----TMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE------ 355 (430)
T ss_dssp -HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS------
T ss_pred -HHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC------
Confidence 1122223333 234445667788889999998887765 443321 1256 9999996
Q ss_pred ChhhHHHHHHHHhhhcceEeeecccCCC-----CCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 369 GEDDALRLRGHLRVRFGVEVPIHYQAPK-----DDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 369 ~~~~~~~l~~~L~~~~gI~v~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+..++.++.+.|. .+++.+..+....- .-.+.... .+.+.+..+++||+|++. |+++.+++.|++.+
T Consensus 356 ~~~~~~~~~~~l~-~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 356 SKEASYRFMDALK-LIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp SHHHHHHHHHHCS-SSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCC-cceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 3456778888874 35666543322110 00000000 011224567899999974 55666666666654
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=229.16 Aligned_cols=347 Identities=13% Similarity=0.075 Sum_probs=222.5
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDD-FYF--NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
..+.|..+ ..+.|+.|.+++.+.+.... ++++. ++. ....+..+.+++.+++++|++ +++|++++| |+|+.+
T Consensus 26 ~~i~l~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~~sG-t~a~~~ 102 (417)
T 3n0l_A 26 EGLEMIAS-ENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK-FANVQPNSG-SQANQG 102 (417)
T ss_dssp HSEECCTT-CCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSH-HHHHHH
T ss_pred cCeeeecc-cCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCC-CcceEeccH-HHHHHH
Confidence 45566533 44557789999987663221 11211 111 122345556888999999995 556766555 899999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH-HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY-VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~-a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
++.++ +++||+|+++.++|+++...+... ....+..+..++ .++++.+ +++|++++++ +++
T Consensus 103 ~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~d~~~l~~~i~~-----~~~ 165 (417)
T 3n0l_A 103 VYAAL--------INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYG----VELDGRIDYEKVREIAKK-----EKP 165 (417)
T ss_dssp HHHHH--------SCTTCEEEEECC----------------CCSEEEEEC----CCTTSSCCHHHHHHHHHH-----HCC
T ss_pred HHHHh--------cCCCCEEEecccccccccchhhhhhhhcceeeeEecc----CCCCCCcCHHHHHHHHHh-----cCC
Confidence 99987 589999999999998765432221 111344555553 3333444 8999999952 478
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
++|++++++| |...|+++|.++|++||+ ++|+|++|+.|.. +..+. .+|++++|+||++.|+.| |++++
T Consensus 166 ~~v~~~~~~~--G~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~ 239 (417)
T 3n0l_A 166 KLIVCGASAY--ARVIDFAKFREIADEIGA-YLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMT 239 (417)
T ss_dssp SEEEECCSSC--CSCCCHHHHHHHHHHHTC-EEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEE
T ss_pred eEEEECCccc--CccCCHHHHHHHHHHcCC-EEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEE
Confidence 8999887774 999999999999999999 8999999876554 22222 469999999999878876 99888
Q ss_pred e-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 267 R-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 267 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+ +++.+. + .... . ....++++...+.++..++..... .+++.++++..++++++.+.|.+ .++.
T Consensus 240 ~~~~~~~~-~-~~~~---~-------~~~~~~~~~~~~aa~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~-~g~~ 304 (417)
T 3n0l_A 240 NDEELAKK-I-NSAI---F-------PGIQGGPLMHVIAAKAVGFKFNLS--DEWKVYAKQVRTNAQVLANVLMD-RKFK 304 (417)
T ss_dssp SCHHHHHH-H-HHHH---T-------TTTCSSCCHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCHHHHHH-H-hhhh---C-------CcccCCcHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHh-CCce
Confidence 7 455543 1 1110 0 001134444444555555554332 15678888999999999999988 4776
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc--
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-- 423 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-- 423 (452)
+..+. ...+++++.++. .+.+...+.+.|.+ +||.+.....+...+. ....+.+|+++...
T Consensus 305 ~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~----------~~~~~~~ri~~~~~~~ 367 (417)
T 3n0l_A 305 LVSDG-TDNHLVLMSFLD-----REFSGKDADLALGN-AGITANKNTVPGEIRS----------PFITSGLRLGTPALTA 367 (417)
T ss_dssp EGGGS-CSSSEEEEECTT-----SSSCHHHHHHHHHH-TTEECEECCCTTCCSC----------TTTCSEEEEECHHHHH
T ss_pred eccCC-CCceEEEEEccc-----CCCCHHHHHHHHHH-cCeEEeccccCCCCcc----------cCCCCeeEecCHHHhh
Confidence 55422 225677777641 24467788888865 5999975443311100 12346799998643
Q ss_pred --CCHHHHHHHHHHHHHHHhcc
Q 012991 424 --NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 424 --~t~~di~~l~~~l~~~~~~~ 443 (452)
.+++|+++++++|+++++..
T Consensus 368 ~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 368 RGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 36899999999999999764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=217.49 Aligned_cols=344 Identities=15% Similarity=0.105 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCE
Q 012991 53 KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDT 132 (452)
Q Consensus 53 ~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~ 132 (452)
+++.+++.+.+... +.....+...++++.++++++. +++++|+|||+|+.+++.++ .+++||+
T Consensus 12 ~~v~~a~~~~~~~~-------~~~~~g~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~l-------~~~~gd~ 74 (394)
T 1o69_A 12 GNELKYIEEVFKSN-------YIAPLGEFVNRFEQSVKDYSKS---ENALALNSATAALHLALRVA-------GVKQDDI 74 (394)
T ss_dssp CCHHHHHHHHHHHT-------TTSCTTHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-------TCCTTCE
T ss_pred HHHHHHHHHHHHcC-------CccCCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-------CCCCCCE
Confidence 44778887776531 1111124578999999999988 48999999999999999986 2578999
Q ss_pred EEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHH
Q 012991 133 VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRK 211 (452)
Q Consensus 133 Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~ 211 (452)
|+++.++|+++..++.. .|.+++.+++ ++++.+ ++++++++++. ..++++|++++ ++|...++++
T Consensus 75 Vl~~~~~~~~~~~~~~~----~g~~~~~v~~----~~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~l~~ 140 (394)
T 1o69_A 75 VLASSFTFIASVAPICY----LKAKPVFIDC----DETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAKMDE 140 (394)
T ss_dssp EEEESSSCGGGTHHHHH----TTCEEEEECB----CTTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCCHHH
T ss_pred EEECCCccHHHHHHHHH----cCCEEEEEEe----CCCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhhHHH
Confidence 99999999998777644 5999999954 333344 89999988631 12689999986 7899999999
Q ss_pred HHHHHHHcCCCEEEEecccccCCcccccc--c-cCccEEEEcCcccCcCCCCcEEEEEe-cCccccCCCCCceeccCCC-
Q 012991 212 LVKICRDEGVDQVFVDAAHAMGSIKIDVK--E-IGADFYVSNLHKWFFCPPSVAFLYCR-KSILSSDMHHPVVSHEFGN- 286 (452)
Q Consensus 212 i~~l~~~~~~~~~ivD~a~~~g~~~~~~~--~-~~~d~~~~s~~K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~~~- 286 (452)
|.++|+++|+ ++|+|++|+.|....+.. . .++|++++|.+|. .++.++|+++++ +++++. + ..... ++.
T Consensus 141 i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~-l~~~~~G~~~~~~~~l~~~-l-~~~~~--~~~~ 214 (394)
T 1o69_A 141 IVEICKENDI-VLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKI-ITTSGGGMLIGKNKEKIEK-A-RFYST--QARE 214 (394)
T ss_dssp HHHHHHHTTC-EEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS-SCCSSCEEEEESCHHHHHH-H-HHHTB--TCCC
T ss_pred HHHHHHHcCC-EEEEECcCcccceeCCcccccccCcEEEEEeCCcc-CCCCCceEEEECCHHHHHH-H-HHHHH--hccc
Confidence 9999999999 899999999776533221 1 3578888889996 455668999996 565554 1 11100 110
Q ss_pred Ccc-cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc-ccc--eEEEEcC
Q 012991 287 GLP-IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI-CAA--MVMVGLP 362 (452)
Q Consensus 287 ~~~-~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~--~~~~~~~ 362 (452)
..+ .+....|............++..+. .++...++.+++++++.+.|.++ +++..+... ..+ ++++.++
T Consensus 215 ~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~ 288 (394)
T 1o69_A 215 NCLHYEHLDYGYNYRLSNVLGAIGVAQME----VLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALIN 288 (394)
T ss_dssp SSSSCCCSSCCCBCBCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEES
T ss_pred cCccccccccCcccCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEec
Confidence 000 0000001111011111112222211 35667888899999999999775 555443211 122 5677765
Q ss_pred Ccc---------------ccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC----C----CCccceEEec
Q 012991 363 SRL---------------RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK----D----GIITGYARIS 419 (452)
Q Consensus 363 ~~~---------------~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~----~----~~~~~~iRis 419 (452)
... +...+.+..++.+.|.+ .||.++.++.+.. +...+... . ......+|+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~ 363 (394)
T 1o69_A 289 FDKNELNACQKDINISQKNITLHPKISKLIEDLKN-KQIETRPLWKAMH----TQEVFKGAKAYLNGNSELFFQKGICLP 363 (394)
T ss_dssp CCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHH-TTCCCBCCCCCGG----GCGGGTTCEEEECSHHHHHHHHEEEEC
T ss_pred chhhccccccccccccccccccccCHHHHHHHHHH-cCCcccccCCccc----cchhhhccCCCCChHHHHHhcCeEEcc
Confidence 210 00002367789999976 5999976643211 00000000 0 0001456777
Q ss_pred ccccCCHHHHHHHHHHHHHHHhccc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
.+.++|++|+++++++|+++++.+.
T Consensus 364 ~~~~~t~edi~~~~~~l~~~~~~~~ 388 (394)
T 1o69_A 364 SGTAMSKDDVYEISKLILKSIKAGS 388 (394)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccc
Confidence 7889999999999999999987664
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=213.64 Aligned_cols=304 Identities=12% Similarity=0.128 Sum_probs=204.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
+.....+...++++++++++|.+ +.++++||++|+..++.++ +++||+|+++++.|++....+..++..
T Consensus 53 y~~~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~ai~~~~~~~--------~~~gd~vl~~~~~y~~~~~~~~~~~~~ 121 (389)
T 3acz_A 53 YSRLGNPTVEQFEEMVCSIEGAA---GSAAFGSGMGAISSSTLAF--------LQKGDHLIAGDTLYGCTVSLFTHWLPR 121 (389)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHTTT--------CCTTCEEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHH
Confidence 33434677899999999999984 6677788899999998865 578999999999999988888776788
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|.+++.++. .+ ++++++++ .+++++|++++++||+|.+.|+++|.++|+++|+ ++|+|++++.+
T Consensus 122 ~g~~~~~v~~----~d----~~~l~~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~-~livD~~~~~~ 186 (389)
T 3acz_A 122 FGIEVDLIDT----SD----VEKVKAAW------KPNTKMVYLESPANPTCKVSDIKGIAVVCHERGA-RLVVDATFTSP 186 (389)
T ss_dssp TTCEEEEECT----TC----HHHHHHTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTC-EEEEECTTTCT
T ss_pred cCCEEEEECC----CC----HHHHHHhc------CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 22 68888888 5689999999999999999999999999999999 89999999877
Q ss_pred Cc--cccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 234 SI--KIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 234 ~~--~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
.. +++ +++|+++.|++|+++++.+ .|++++++ ++++. + .+... .+.++.+. .....
T Consensus 187 ~~~~~~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~-l-~~~~~-----------~~g~~~~~---~~~~~ 247 (389)
T 3acz_A 187 CFLKPLE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIAT-I-KFYRK-----------DAGSLMAP---MDAFL 247 (389)
T ss_dssp TTCCGGG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHH-H-HHHHH-----------HHCCCCCH---HHHHH
T ss_pred cccCccc---cCCeEEEECChhhccCCCCceeEEEEECcHHHHHH-H-HHHHH-----------hcCCCCCH---HHHHH
Confidence 53 333 5789999999999777766 49999988 76654 1 11100 01111111 11222
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCC-------------c-ccccceEEEEcCCccccCChhhH
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSP-------------P-EICAAMVMVGLPSRLRVMGEDDA 373 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~ 373 (452)
++..+. .+....++..+++..+.+.|.+.+.+. +..+ . ...++++.|.++ + .
T Consensus 248 ~~~~l~----~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~-------~--~ 314 (389)
T 3acz_A 248 CARGMK----TLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-------S--F 314 (389)
T ss_dssp HHHHHT----THHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-------S--H
T ss_pred HHcCcc----HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC-------C--H
Confidence 233322 334445556677778888887753221 1111 0 123678888875 2 4
Q ss_pred HHHHHHHhhhcceEeee---c------ccCCCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 374 LRLRGHLRVRFGVEVPI---H------YQAPKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 374 ~~l~~~L~~~~gI~v~~---~------~~~~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
.++.+.|.+ .||.++. + ..+.... +..... ....+..++.+|+|++..++++.++.+.++|+
T Consensus 315 ~~~~~~l~~-~~i~~~~~s~G~~~sl~~~~~~~~-~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~ 387 (389)
T 3acz_A 315 EAAKKLMEH-LKVCTLAVSLGCVDTLIEHPASMT-HAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE 387 (389)
T ss_dssp HHHHHHHTT-CSSSEEBSCCCCSSCEEECTTTTT-TSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-CCCcEECcCCCCcccEeeCCcccc-cccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHh
Confidence 456666654 5887654 2 2221100 000000 00112336899999998766665666665553
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-25 Score=218.08 Aligned_cols=310 Identities=12% Similarity=0.117 Sum_probs=210.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..+++++++++++|. +.+++++||++|+.+++.++ +++||+|+++++.|++....+..++..
T Consensus 75 y~r~~~p~~~~l~~~la~~~g~---~~~~~~~sG~~Ai~~al~~l--------~~~Gd~Vi~~~~~y~~~~~~~~~~~~~ 143 (414)
T 3ndn_A 75 YSRYGNPTVSVFEERLRLIEGA---PAAFATASGMAAVFTSLGAL--------LGAGDRLVAARSLFGSCFVVCSEILPR 143 (414)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTT--------CCTTCEEEEESCCCHHHHHHHHTHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH--------hCCCCEEEEcCCccchHHHHHHHHHHH
Confidence 4444567889999999999997 47899999999999998876 589999999999999988887766677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|.+++.++. ++ +++|++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.|
T Consensus 144 ~g~~~~~v~~----~d----~~~l~~ai------~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~-~livDe~~~~~ 208 (414)
T 3ndn_A 144 WGVQTVFVDG----DD----LSQWERAL------SVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGA-KVVLDNVFATP 208 (414)
T ss_dssp TTCEEEEECT----TC----HHHHHHHT------SSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTTHH
T ss_pred cCcEEEEeCC----CC----HHHHHHhc------CCCCeEEEEECCCCCCCccccHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 33 68899998 5689999999999999999999999999999999 89999999866
Q ss_pred CccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
...... ..++|+++.|++|++ ++.| .|+++.+++.+...+ .... ..+ |... .......++
T Consensus 209 ~~~~~~-~~g~div~~S~sK~l-~~~G~~~~G~vv~~~~~~~~~l-~~~~-~~~-----------g~~~--~~~~a~~~~ 271 (414)
T 3ndn_A 209 LLQQGF-PLGVDVVVYSGTKHI-DGQGRVLGGAILGDREYIDGPV-QKLM-RHT-----------GPAM--SAFNAWVLL 271 (414)
T ss_dssp HHCCCG-GGTCSEEEEETTTTT-TCSSCCCCEEEEECHHHHTTHH-HHHH-HHH-----------CCCC--CHHHHHHHH
T ss_pred ccCCch-hcCCCeEeccCCccc-cCCCCceEEEEEECHHHHHHHH-HHHH-HHc-----------CCCC--CHHHHHHHH
Confidence 432222 457899999999985 5544 689988877665201 1110 000 1111 111122222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCC----hh
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMG----ED 371 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~ 371 (452)
..+. .+....++..++++++.+.|.+.+++. +..|. ...+++++|.++. . ..
T Consensus 272 ~~l~----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~-----~~~~~~~ 342 (414)
T 3ndn_A 272 KGLE----TLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDC-----PEDVAKQ 342 (414)
T ss_dssp HHGG----GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECS-----CGGGHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcC-----CccccHH
Confidence 2222 345556677888889999998876653 32221 1247899999862 1 23
Q ss_pred hHHHHHHHHhhhcceEeeecccCCCC-CCCCCCCC------CCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 372 DALRLRGHLRVRFGVEVPIHYQAPKD-DGQPQAGA------RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 372 ~~~~l~~~L~~~~gI~v~~~~~~~~~-~~~~~~~~------~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
...++.+.|.. +++.+..+..+.-- ..++.... ..+.+..+++||+|++. |+++.+++.|++.+
T Consensus 343 ~~~~~~~~l~~-~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 343 RAFEVLDKMRL-IDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp HHHHHHHHCSS-SEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-ceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 56778888854 57766443221000 00000000 00124567899999985 44555666665544
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-25 Score=217.26 Aligned_cols=306 Identities=13% Similarity=0.116 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE
Q 012991 78 LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS 157 (452)
Q Consensus 78 ~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~ 157 (452)
..+...++++++++++|.+ +.+++ ++|++|+..++. + +++||+|+++++.|++.+..+..+++..|++
T Consensus 65 ~~p~~~~l~~~la~~~g~~--~~i~~-~sG~~ai~~~~~-l--------~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~ 132 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDGAK--YCLAF-ASGLAATVTITH-L--------LKAGDQIICMDDVYGGTNRYFRQVASEFGLK 132 (403)
T ss_dssp -CHHHHHHHHHHHHHHTCS--EEEEE-SCHHHHHHHHHT-T--------SCTTCEEEEESSCCHHHHHHHHHTGGGGTCE
T ss_pred CCchHHHHHHHHHHHhCCC--cEEEE-CCHHHHHHHHHH-H--------hCCCCEEEEeCCCcchHHHHHHHHHHHcCCE
Confidence 3456789999999999985 45554 555799998887 5 4889999999999999887776656778999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcC-CCEEEEecccccCCcc
Q 012991 158 VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEG-VDQVFVDAAHAMGSIK 236 (452)
Q Consensus 158 v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~-~~~~ivD~a~~~g~~~ 236 (452)
++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++| + ++|+|++++.+...
T Consensus 133 v~~v~~----~d----~~~l~~~i------~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~-~livD~~~~~~~~~ 197 (403)
T 3cog_A 133 ISFVDC----SK----IKLLEAAI------TPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDI-ILVVDNTFMSPYFQ 197 (403)
T ss_dssp EEEECT----TS----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCC-EEEEECTTTCTTTC
T ss_pred EEEECC----CC----HHHHHHhc------CcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCC-EEEEECCCcccccC
Confidence 999943 32 68888888 578999999999999999999999999999999 9 79999999887542
Q ss_pred ccccccCccEEEEcCcccCcCCCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH
Q 012991 237 IDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV 313 (452)
Q Consensus 237 ~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 313 (452)
..+. +++|+++.|++|+++|+.| .|+++++ +++.+. + .... ..+.++.+.....+...+++.
T Consensus 198 ~~~~-~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~-l-~~~~-----------~~~g~~~~~~~~~~~~~~l~~- 262 (403)
T 3cog_A 198 RPLA-LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNR-L-RFLQ-----------NSLGAVPSPIDCYLCNRGLKT- 262 (403)
T ss_dssp CTTT-TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHH-H-HHHH-----------HHHCCCCCHHHHHHHHHHHTT-
T ss_pred Cccc-cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHH-H-HHHH-----------HhcCCCCCHHHHHHHHhhhhH-
Confidence 2222 5789999999999777766 4999886 455543 1 1110 001112222222122222222
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHc--------------CCCcCCCc-ccccceEEEEcCCccccCChhhHHHHHH
Q 012991 314 SRFEGGIDGIMQRNHEQALKMARMLANAW--------------GTSLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLRG 378 (452)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (452)
.....++..+++..+.+.|.+.+ ++.+..++ ...++++.|.++. . ...+.+
T Consensus 263 ------l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~------~--~~~~~~ 328 (403)
T 3cog_A 263 ------LHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG------T--LQHAEI 328 (403)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS------C--HHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC------C--HHHHHH
Confidence 23334445556666666665542 11111111 1237788888751 1 234555
Q ss_pred HHhhhcceEeee---cc------cCCCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 379 HLRVRFGVEVPI---HY------QAPKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 379 ~L~~~~gI~v~~---~~------~~~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.|.+ .||.+.. +. .+.. ..++..+. ..+.+..++++|+|++..+++++|+++.++|+++++
T Consensus 329 ~l~~-~~i~~~~~s~G~~~sl~~~p~~-~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 329 FLKN-LKLFTLAESLGGFESLAELPAI-MTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp HHHH-CSSSEECSCCSSSSCEEECTTT-TTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred HHHh-CCcceEccCCCCcceeeecccc-cccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 5544 5775532 11 1110 00111110 001123368999999999989999999999988765
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-26 Score=224.32 Aligned_cols=351 Identities=11% Similarity=0.041 Sum_probs=223.6
Q ss_pred CeEEeccCCCC----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH--H
Q 012991 39 GVARINNGSFG----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA--A 112 (452)
Q Consensus 39 ~~~~l~~~~~~----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~--~ 112 (452)
.++.|+.+.+. +.|+.+.+++.+.... ..+.....|....+..++|++++++++++ +++|++|+|+++++ .
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~-~~~i~~t~G~~~al~l~ 109 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRT--KDGVDCRNYGGLLGIADIRELWAEALGLP-ADLVVAQDGSSLNIMFD 109 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCCBC--TTCCBTTSSCCSSCCHHHHHHHHHHHTCC-GGGEEECSSCHHHHHHH
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHHhh--ccchhhhCCCCCCCCHHHHHHHHHHhCCC-hhHEEEecchHHHHHHH
Confidence 47889887764 3444466655432100 01111223444555788999999999996 78999999999997 6
Q ss_pred HHHHHhhcccccCC-C--C-CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 113 IVLQQIGRGFTEGR-F--H-RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 113 ~~~~~l~~~~~~~~-~--~-~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+++.++........ . . .+++|++++|+|++....+ +..|.+++.+++ ++++ + +++|++.++
T Consensus 110 ~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~----~~~g~~~~~v~~----~~~g-~d~~~l~~~l~----- 175 (422)
T 3d6k_A 110 LISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT----EHFGFEMINVPM----TDEG-PDMGVVRELVK----- 175 (422)
T ss_dssp HHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH----HHHTCEEEEEEE----ETTE-ECHHHHHHHHT-----
T ss_pred HHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHH----HHcCCEEEecCC----CCCC-CCHHHHHHHHh-----
Confidence 67676632100000 0 0 1458999999999876655 445999999965 2233 4 899999994
Q ss_pred CCceEEEE-EeccCCCCcccccHH---HHHHHHH-HcCCCEEEEecccccCCc------cccc-------cccCccEEEE
Q 012991 188 GKMIRLAI-IDHITSMPCVVIPVR---KLVKICR-DEGVDQVFVDAAHAMGSI------KIDV-------KEIGADFYVS 249 (452)
Q Consensus 188 ~~~~~lv~-~~~~~n~tG~~~~l~---~i~~l~~-~~~~~~~ivD~a~~~g~~------~~~~-------~~~~~d~~~~ 249 (452)
..++++|+ +++++||||.++|.+ +|+++|+ ++|+ ++|+|++|+.+.. ...+ ...+.++++.
T Consensus 176 ~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 254 (422)
T 3d6k_A 176 DPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDF-RIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMS 254 (422)
T ss_dssp STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTC-EEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEE
T ss_pred cCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCC-EEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEc
Confidence 24789888 789999999999977 6777787 8999 8999999973111 0111 1234678899
Q ss_pred cCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 250 NLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 250 s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
|++|++.++..+|++++++++++. + ... ......+.+...+.++..+++....+..-++.+++++++
T Consensus 255 S~SK~~~~GlriG~~~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 321 (422)
T 3d6k_A 255 STSKITHAGSGVSFFASSKENIEW-Y-ASH-----------ANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAP 321 (422)
T ss_dssp ESTTTSCTTSSCEEEECCHHHHHH-H-HHH-----------HHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred ChhhhcCcccceEEEEeCHHHHHH-H-HHH-----------HHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 999963222338999998877664 1 111 000112233334433433443211000124556666777
Q ss_pred HHHHHHHHHHHH----cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-cccCCCCCCCCCCC
Q 012991 330 QALKMARMLANA----WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI-HYQAPKDDGQPQAG 404 (452)
Q Consensus 330 ~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~-~~~~~~~~~~~~~~ 404 (452)
+++.+.+.|.+. +++.+..|.. ++++|+.++. . +...+.+.|.+ +||.+.+ +..+....
T Consensus 322 ~~~~l~~~L~~~l~~~~~~~~~~p~~--g~~~~~~~~~------~-~~~~~~~~l~~-~gV~v~~~g~~f~~~~------ 385 (422)
T 3d6k_A 322 KFERVLEILDSRLSEYGVAKWTSPTG--GYFISVDVVP------G-TASRVVELAKE-AGIALTGAGSSFPLHN------ 385 (422)
T ss_dssp HHHHHHHHHHHHHGGGTCEEECCCSB--SSCEEEEEST------T-CHHHHHHHHHH-TTEECCCTTTTSGGGC------
T ss_pred HHHHHHHHHHHhcCcCCceEEeCCCc--ceEEEEECCC------C-CHHHHHHHHHH-CCeEEEcCccccCCCC------
Confidence 777777777653 2245445543 7788998862 2 45678787765 5999976 33221000
Q ss_pred CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 405 ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 405 ~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
....+++|||++. ++.+++++++++|++++++
T Consensus 386 -----~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 386 -----DPNNENIRLAPSL-PPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp -----CTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHH
Confidence 0135799999997 7999999999999998864
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-25 Score=214.43 Aligned_cols=351 Identities=13% Similarity=0.078 Sum_probs=217.1
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHH-HhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAV-KDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
|.++.+..++.+ .+.+++.+.+..-. +.. ..+...++++++ ++++|. ..++++++|||+|+.+++.++
T Consensus 5 i~~~~p~~~~~~-~i~~a~~~~~~~~~------~~~-~~~~~~~l~~~~~a~~~g~--~~~~v~~~sgt~al~~al~~l- 73 (377)
T 3ju7_A 5 IPFLRASTVPVI-EYLDELKEIDASHI------YTN-YGPINQRFEQTIMSGFFQN--RGAVTTVANATLGLMAAIQLK- 73 (377)
T ss_dssp BCSCCCCCCCGG-GGHHHHHHHHHHTC------CSS-SCHHHHHHHHHHHHHTSTT--CSEEEEESCHHHHHHHHHHHH-
T ss_pred eeccCCCCCCcH-HHHHHHHHHHHcCC------ccc-CCHHHHHHHHHHHHHHhCC--CCeEEEeCCHHHHHHHHHHHc-
Confidence 455544444444 47888887765421 110 124578899999 999993 268899999999999999886
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
.+++||+|+++.++|.++..++ ...|++++.++++. +++.+ +++++++++.. ..+|++|+
T Consensus 74 ------~~~~Gd~Vi~~~~~~~~~~~~~----~~~G~~~~~v~~~~---~~~~~d~~~l~~~i~~~---~~~tk~v~--- 134 (377)
T 3ju7_A 74 ------KRKKGKYALMPSFTFPATPLAA----IWCGLEPYFIDISI---DDWYMDKTVLWDKIEEL---KEEVAIVV--- 134 (377)
T ss_dssp ------SCTTCCEEEEESSSCTHHHHHH----HHTTCEEEEECBCT---TTCSBCHHHHHHHHHHH---GGGEEEEC---
T ss_pred ------CCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCC---ccCCcCHHHHHHHHhcC---CCCceEEE---
Confidence 3689999999999999986665 44699999996521 23344 89999988420 12388887
Q ss_pred cCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccccccc---CccEEEE--cCcccCcCCCCcEEEEEecC-ccc
Q 012991 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEI---GADFYVS--NLHKWFFCPPSVAFLYCRKS-ILS 272 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~~~--s~~K~l~g~~G~G~l~~~~~-~~~ 272 (452)
++|++|...|+++|.++|+ +|+ ++|+|++|+.|... +.... ..|+.++ +.+|++.++. .|+++.+++ +.+
T Consensus 135 ~~~~~G~~~~~~~i~~la~-~~~-~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~-gG~~~~~~~~l~~ 210 (377)
T 3ju7_A 135 PYATFGSWMNLEEYEELEK-KGV-PVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGE-GGLIYSKNEEDIQ 210 (377)
T ss_dssp CBCGGGBCCCCHHHHHHHH-TTC-CBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBS-CEEEEESCHHHHH
T ss_pred EECCCCCccCHHHHHHHHh-cCC-EEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCC-cEEEEECCHHHHH
Confidence 4567899999999999999 999 79999999988652 21122 1355554 5679876644 477776643 333
Q ss_pred cCCCCCceeccCCCCcccccccccccCccccccHHHH--HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CC
Q 012991 273 SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA--VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG-SP 349 (452)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~ 349 (452)
. + ..... +|..........|.... +..+.++ +..+. .++...++.+++++++.+.|.+++++.+. .+
T Consensus 211 ~-~-~~~~~--~g~~~~~~~~~~g~~~~--~~~~~aa~~~~~l~----~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 280 (377)
T 3ju7_A 211 R-I-KRMGN--FGFDTNRECTMMGFNCK--MSEYAAAIGIATMK----KWDDKLKERTRISEWYKQLLQSNGLMKKGWQL 280 (377)
T ss_dssp H-H-HHHTB--TTBCTTSCBCSSCCBCC--CCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBC
T ss_pred H-H-HHHHh--cCCCCCCceeeccccCC--CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCccccccC
Confidence 2 1 11100 11100000111121111 1122222 23333 56777888899999999999988654221 12
Q ss_pred cc---cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC-CCCCCCCCCCCCCCC----CCccceEEeccc
Q 012991 350 PE---ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-PKDDGQPQAGARDKD----GIITGYARISHQ 421 (452)
Q Consensus 350 ~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-~~~~~~~~~~~~~~~----~~~~~~iRis~~ 421 (452)
.. ....++.+.++ +..+.+++.+.|.++ ||.++.++.. .+....-........ ......||++++
T Consensus 281 ~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~ 353 (377)
T 3ju7_A 281 QKTEAVIQQFMPILCP------EEVRNKQVIEDLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLW 353 (377)
T ss_dssp CCCSCBCCSSEEEECC------TTSCHHHHHHHHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCC
T ss_pred CCCCcceEEEEEEEeC------ChhhHHHHHHHHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCC
Confidence 11 11123455554 233578899999775 9998766531 111000000000000 123568999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
...|++|++++++.|++++..
T Consensus 354 ~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 354 EGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp TTCCHHHHHHHHHHHTC----
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999988764
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=214.49 Aligned_cols=337 Identities=13% Similarity=0.119 Sum_probs=218.2
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH---Hhhccccc
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ---QIGRGFTE 124 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~---~l~~~~~~ 124 (452)
.+..++.+.+++.+.+... .... ..+...+...+++++|+++++.+.+++|++|+||++|+.+++. ++
T Consensus 55 lg~~~~~v~~a~~~~~~~~-~~~~--~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~------ 125 (426)
T 1sff_A 55 TGHLHPKVVAAVEAQLKKL-SHTC--FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA------ 125 (426)
T ss_dssp TCBTCHHHHHHHHHHTTTC-SCCC--TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH------
T ss_pred cCCCCHHHHHHHHHHHHhC-CCcc--ccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHh------
Confidence 4556777999998876432 1111 1234567789999999999932323899999999999999987 33
Q ss_pred CCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE-------------EEEEeCCCCC-CChHHH-HHHHHHHHhccccCCC
Q 012991 125 GRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS-------------VVEVQLPFPL-ASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 125 ~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~-------------v~~~~~~~~~-~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
.+++ +|++.++.|++....+.. ..|.+ ++.++++... +..+.+ +++|++++++.. ..+
T Consensus 126 --~~~~-~vi~~~p~y~~~~~~~~~---~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~ 198 (426)
T 1sff_A 126 --TKRS-GTIAFSGAYHGRTHYTLA---LTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APE 198 (426)
T ss_dssp --HTCC-EEEEETTCCCCSSHHHHH---HSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGG
T ss_pred --hCCC-eEEEECCCcCCCchHhhh---hcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCC
Confidence 2455 899999998875443322 22322 6666542110 112334 889999886310 014
Q ss_pred ceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCCCC
Q 012991 190 MIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
++++|+++...++||...+ +++|.++|++||+ ++|+|++|+ ++.. .++.....+|++ |++|++ ++ |
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~-~~-G 273 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI-MLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSI-AG-G 273 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGG-GT-S
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEechhhccCcccchhhhhhcCCCCCEE--EEcccc-cC-C
Confidence 7888888544334997777 8999999999999 899999998 3211 122223346766 566975 44 6
Q ss_pred --cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 --~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|++++++++++. +. ... . ..+.+.+...+.++.++++++.+ +.+.++++++++++.+.|
T Consensus 274 lriG~~~~~~~~~~~-l~-~~~---~--------~~~~~~~~~~~~a~~aal~~~~~-----~~~~~~~~~~~~~l~~~l 335 (426)
T 1sff_A 274 FPLAGVTGRAEVMDA-VA-PGG---L--------GGTYAGNPIACVAALEVLKVFEQ-----ENLLQKANDLGQKLKDGL 335 (426)
T ss_dssp SCCEEEEEEHHHHTT-SC-TTS---B--------CCSSSSCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcHHHHhh-hc-cCC---c--------CcCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHH
Confidence 6999999887765 21 110 0 00123344455556666777664 245677888889998888
Q ss_pred HHHc-CCCcCCCcccccceEEEEcCCcccc--CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 339 ANAW-GTSLGSPPEICAAMVMVGLPSRLRV--MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
.++. .+.........+.++++.++..... .+..+..++.+.|.++ ||.+..+... +++
T Consensus 336 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~------------------~~~ 396 (426)
T 1sff_A 336 LAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGPY------------------YNV 396 (426)
T ss_dssp HHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEESTT------------------SCE
T ss_pred HHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHC-CcEEecCCCC------------------CCE
Confidence 7753 1322111112377888887421000 0234567899998765 9998754321 468
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|++++..++++|+++++++|+++++.
T Consensus 397 iRi~~~~~~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 397 LRILVPLTIEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 999998888999999999999998754
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=235.15 Aligned_cols=322 Identities=15% Similarity=0.059 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 80 KGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
....++++.+|+++|++ ..+++++|+|+|+..++.++ +++||+|++++++|.|+..++ +...|++++
T Consensus 173 ~~i~e~e~~lA~~~gae--~~i~v~nGtt~an~~ai~al--------~~pGD~VLv~~~~H~S~~~~~---~~l~Ga~~v 239 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSAL--------VSNGDLVLFDRNNHKSVYNSA---LAMAGGRPV 239 (730)
T ss_dssp THHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHH---TTTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh--------cCCCCEEEEcCCchHHHHHHH---HHHCCCEEE
Confidence 46799999999999996 56778888889999999987 589999999999999988762 244699998
Q ss_pred EEeCCCC-CCChHHH-HHHH-----HHHHhcc-cc--CCCce-EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEec
Q 012991 160 EVQLPFP-LASEEEI-INEF-----KKGIEKG-KK--DGKMI-RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDA 228 (452)
Q Consensus 160 ~~~~~~~-~~~~~~~-~~~l-----~~~i~~~-~~--~~~~~-~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~ 228 (452)
.++.... ..-.+.+ +++| ++++++. +. .+.++ ++|+++++ |++|.+.|+++|+++|+++|+ ++++|+
T Consensus 240 ~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~-~livDe 317 (730)
T 1c4k_A 240 YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCD-YIEFDS 317 (730)
T ss_dssp EECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBS-EEEEEC
T ss_pred EEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCC-eEEEEc
Confidence 8854210 0000112 4444 8888531 00 01122 89999988 589999999999999999999 899999
Q ss_pred ccccCC--c-------cccccccCcc----EEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccc
Q 012991 229 AHAMGS--I-------KIDVKEIGAD----FYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWI 295 (452)
Q Consensus 229 a~~~g~--~-------~~~~~~~~~d----~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 295 (452)
||+.+. . +++...+++| +++.|+||++.|+.+.|+++++++.+.. ...+.... ...........
T Consensus 318 Ah~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g--~~~~i~~~-~~~~~~~~~~s 394 (730)
T 1c4k_A 318 AWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKG--QLRYCDHK-HFNNSFNLFMS 394 (730)
T ss_dssp TTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTT--STTCCCHH-HHHHHHHHHSC
T ss_pred ccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcC--cccccCHH-HHHHHHHHhCC
Confidence 987431 1 1233234677 9999999998888888899888776521 00010000 00000112334
Q ss_pred cccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HcCCCcCCCcc-----------------------
Q 012991 296 GTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN-AWGTSLGSPPE----------------------- 351 (452)
Q Consensus 296 ~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~----------------------- 351 (452)
+++++..+.++.++++++... .| +...++..++++++++.|.+ ++|+++..+..
T Consensus 395 tsp~~~~iaal~aA~~~l~~~-~g-~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (730)
T 1c4k_A 395 TSPFYPMYAALDVNAAMQEGE-AG-RKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRF 472 (730)
T ss_dssp SSCCHHHHHHHHHHHHHHSHH-HH-HHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBC
T ss_pred CCCcHHHHHHHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhcc
Confidence 678887778888888877641 13 45567789999999999988 67887755431
Q ss_pred ---------c---cc--ce----EEEEcCCcc---c--cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 352 ---------I---CA--AM----VMVGLPSRL---R--VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 352 ---------~---~~--~~----~~~~~~~~~---~--~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
. .+ .+ +.+..|... + ...+.++..+.+.|.++ ||.+...
T Consensus 473 ~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~-GI~v~~~----------------- 534 (730)
T 1c4k_A 473 EKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDH-GIIPEKS----------------- 534 (730)
T ss_dssp CTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHT-TCCCSEE-----------------
T ss_pred CccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHC-CcEEEEC-----------------
Confidence 0 01 11 456554100 0 01245788999999875 9987521
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+.+|++++.++|.+++++++++|+++.+.
T Consensus 535 ---~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 535 ---DLNSILFLMTPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp ---CSSEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 2368999999999999999999999998754
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=212.48 Aligned_cols=334 Identities=14% Similarity=0.118 Sum_probs=214.8
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN 130 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g 130 (452)
.++++.+++.+.+... .+...+...++++.++++++.+ ++++++|||+|+..++.++ .+++|
T Consensus 14 ~~~~v~~a~~~~~~~~--------~~~~~~~~~~l~~~la~~~~~~---~~~~~~sGt~al~~al~~~-------~~~~g 75 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRHG--------QYILGPEVTELEDRLADFVGAK---YCISCANGTDALQIVQMAL-------GVGPG 75 (367)
T ss_dssp HHHHHHHHHHHHHHHC--------CCSSCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHT-------TCCTT
T ss_pred cCHHHHHHHHHHHhcC--------CccCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHh-------CCCCc
Confidence 4455777776665431 1223456889999999999984 8999999999999999976 25889
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccH
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV 209 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l 209 (452)
|+|+++.++|++...++. ..|.+++.++++. +.+.+ ++++++++ ++++++|+ ++|++|...|+
T Consensus 76 d~Vi~~~~~~~~~~~~~~----~~G~~~~~~~~~~---~~~~~d~~~l~~~i------~~~~~~v~---~~~~~G~~~~~ 139 (367)
T 3nyt_A 76 DEVITPGFTYVATAETVA----LLGAKPVYVDIDP---RTYNLDPQLLEAAI------TPRTKAII---PVSLYGQCADF 139 (367)
T ss_dssp CEEEEESSSCTHHHHHHH----HTTCEEEEECBCT---TTCSBCGGGTGGGC------CTTEEEEC---CBCGGGCCCCH
T ss_pred CEEEECCCccHHHHHHHH----HcCCEEEEEecCC---ccCCcCHHHHHHhc------CcCCcEEE---eeCCccChhhH
Confidence 999999999999877654 4699999995521 11333 78888888 57898888 56789999999
Q ss_pred HHHHHHHHHcCCCEEEEecccccCCccccccccCc--cEEEEcC--cccCcCCCCcEEEEEec-CccccCCCCCceeccC
Q 012991 210 RKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGA--DFYVSNL--HKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEF 284 (452)
Q Consensus 210 ~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~--d~~~~s~--~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~ 284 (452)
++|.++|+++|+ ++|+|++|+.|.. .+....+. |++++|+ +|+++++...|+++.++ ++.+. + .... .+
T Consensus 140 ~~i~~la~~~~~-~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~-~-~~~~--~~ 213 (367)
T 3nyt_A 140 DAINAIASKYGI-PVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATA-I-RQIA--RH 213 (367)
T ss_dssp HHHHHHHHHTTC-CBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHH-H-HHHT--BT
T ss_pred HHHHHHHHHcCC-EEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHH-H-HHHH--hc
Confidence 999999999999 7999999998765 22222222 8999995 89854412257777754 34332 1 1110 01
Q ss_pred CCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc---cccceEEEEc
Q 012991 285 GNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE---ICAAMVMVGL 361 (452)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~ 361 (452)
|..........|.......+....++..+. .++...++.+++.+++.+.|.++ ++.+...+. ....++.+..
T Consensus 214 g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~----~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~ 288 (367)
T 3nyt_A 214 GQDRRYHHIRVGVNSRLDTLQAAILLPKLE----IFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRM 288 (367)
T ss_dssp TEEETTEECSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEEC
T ss_pred CCCcCceeeccCcCCCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEe
Confidence 100000000112222222222233333333 46777888889999999999987 555433221 1122344444
Q ss_pred CCccccCChhhHHHHHHHHhhhcceEeeeccc-CCCCCCCCCCCCCCCC----CCccceEEecccccCCHHHHHHHHHHH
Q 012991 362 PSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ-APKDDGQPQAGARDKD----GIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~-~~~~~~~~~~~~~~~~----~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
+ +.+.+.+.|.++ ||.++.++. +.+.... ........ ......+|++++..+|++||+++++.|
T Consensus 289 ~---------~~~~l~~~L~~~-GI~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~ 357 (367)
T 3nyt_A 289 D---------NRESVQASLKAA-GVPTAVHYPIPLNKQPA-VADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAAL 357 (367)
T ss_dssp S---------SHHHHHHHHHHH-TCCCBCSCSSCGGGSGG-GCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHC-CCceeccCCCccccChh-hhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHH
Confidence 2 567899999775 999876553 1110000 00000000 123568999999999999999999999
Q ss_pred HHHH
Q 012991 437 ILLV 440 (452)
Q Consensus 437 ~~~~ 440 (452)
+++-
T Consensus 358 ~~~~ 361 (367)
T 3nyt_A 358 TNLE 361 (367)
T ss_dssp HC--
T ss_pred HHHh
Confidence 8754
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-24 Score=210.78 Aligned_cols=327 Identities=11% Similarity=0.133 Sum_probs=210.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccc--ccC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF--TEG 125 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~--~~~ 125 (452)
.+..++.+.+++.+.+.... ..+.. + ..+...+++++++++++. ++++|++|||+|+..++.++. ++ ...
T Consensus 79 lgh~~p~v~~ai~~~~~~~~-~~~~~--~-~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~a~-~~~~~~~ 150 (433)
T 1z7d_A 79 QGHCHPNILNAMINQAKNLT-ICSRA--F-FSVPLGICERYLTNLLGY---DKVLMMNTGAEANETAYKLCR-KWGYEVK 150 (433)
T ss_dssp TCBTCHHHHHHHHHHHTTCS-CCCTT--S-EEHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHH-HHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHhCC-CccCC--c-CCHHHHHHHHHHHhhcCC---CeEEEeCCHHHHHHHHHHHHH-HHhhhcc
Confidence 34467779999988875421 11111 1 355678899999999975 689999999999999998652 11 000
Q ss_pred CCCCC-CEEEEeCCcchhHHHHHHHHHHh----cC-----cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 126 RFHRN-DTVLMLHCAFQAVKKSIQAYVTR----AG-----GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 126 ~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~----~g-----~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.+.+| ++|++.++.|++....+..+... .+ ..+..+ +.++ +++|+++++ ++++++|+
T Consensus 151 g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~----~~~d----~~~le~~l~-----~~~~~~vi 217 (433)
T 1z7d_A 151 KIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKV----PYDD----LEALEEELK-----DPNVCAFI 217 (433)
T ss_dssp CCCTTCCEEEEETTC--------------------------CEEEE----CTTC----HHHHHHHHT-----STTEEEEE
T ss_pred CCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEe----CCCC----HHHHHHHhC-----CCCEEEEE
Confidence 12456 89999999988754433221110 00 234444 3222 788998884 35789999
Q ss_pred EeccCCCCcccc----cHHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEEE
Q 012991 196 IDHITSMPCVVI----PVRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~ 265 (452)
++..++++|.+. ++++|.++|++||+ ++|+|++|+ +|... .+.....+|++ |++|+++++ ..+|+++
T Consensus 218 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G~v~ 294 (433)
T 1z7d_A 218 VEPIQGEAGVIVPSDNYLQGVYDICKKYNV-LFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPISAVL 294 (433)
T ss_dssp ECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEE
T ss_pred EECCCCCCCccCCCHHHHHHHHHHHHHcCC-EEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeEEEE
Confidence 988888899876 68999999999999 899999996 32211 12223357887 456987654 3379999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GT 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~ 344 (452)
+++++++. + .+.. .+ . +.+.+.....+..++++.+.+ +.+.++.+++.+++.+.|.++. ++
T Consensus 295 ~~~~~~~~-l-~~~~---~~------~--t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~ 356 (433)
T 1z7d_A 295 ANDDIMLV-I-KPGE---HG------S--TYGGNPLAASICVEALNVLIN-----EKLCENAEKLGGPFLENLKRELKDS 356 (433)
T ss_dssp ECHHHHTT-C-CTTC---CC------C--TTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ECHHHHhh-h-cccc---cc------c--cCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99887765 2 2110 00 0 012233344444455665553 2467788899999999998763 33
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.........+.++++.++. ...+..++.+.|.++ ||.+... ..+++|++++..+
T Consensus 357 ~~~~~~~~~g~~~~i~~~~-----~~~~~~~~~~~l~~~-Gv~v~~~--------------------~~~~iRi~~~~~~ 410 (433)
T 1z7d_A 357 KIVRDVRGKGLLCAIEFKN-----ELVNVLDICLKLKEN-GLITRDV--------------------HDKTIRLTPPLCI 410 (433)
T ss_dssp TTEEEEEEETTEEEEEECT-----TTCCHHHHHHHHHHT-TEECCEE--------------------TTTEEEECCCTTC
T ss_pred CCeEEEEeeeeEEEEEEcc-----ChhHHHHHHHHHHHC-CeEEecC--------------------CCCEEEEECCcCC
Confidence 3222222346788888762 113467899999775 9998642 1368999999888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
|++|+++++++|+++++.
T Consensus 411 t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 411 TKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=214.84 Aligned_cols=325 Identities=14% Similarity=0.096 Sum_probs=213.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..+..++.+.+++.+.+.... ..+.. ...+...+++++++++++. +++++|+||++|+..++.++..... ..
T Consensus 70 ~lG~~~p~v~~ai~~~~~~~~-~~~~~---~~~~~~~~l~~~la~~~g~---~~v~~~~ggteA~~~al~~~~~~~~-~~ 141 (420)
T 2pb2_A 70 ALGHCHPALVEALKSQGETLW-HTSNV---FTNEPALRLGRKLIDATFA---ERVLFMNSGTEANETAFKLARHYAC-VR 141 (420)
T ss_dssp TTCBTCHHHHHHHHHHHTTCC-CCCTT---SCCHHHHHHHHHHHHHSSC---SEEEEESSHHHHHHHHHHHHHHHHH-HH
T ss_pred ccCCCCHHHHHHHHHHHHhcc-cccCc---cCCHHHHHHHHHHHhhCCC---CeEEEeCCHHHHHHHHHHHHHHHhh-hc
Confidence 345667889999988875421 11111 1356778999999999975 6899999999999999997631000 00
Q ss_pred CCCC-CEEEEeCCcchhHHHHHHHHHHhcCcE------------EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 127 FHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGS------------VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 127 ~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~------------v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
-.+| ++|++.++.|++....+..+ .|.+ +..++ .++ +++|++++ .+++++
T Consensus 142 ~~~g~~~vi~~~~~yh~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~----~~d----~~~le~~i------~~~~~~ 204 (420)
T 2pb2_A 142 HSPFKTKIIAFHNAFHGRSLFTVSV---GGQPKYSDGFGPKPADIIHVP----FND----LHAVKAVM------DDHTCA 204 (420)
T ss_dssp TCTTCCEEEEETTCCCCSSHHHHHH---SSCHHHHTTSSSCCSCEEEEC----TTC----HHHHHHHC------CTTEEE
T ss_pred cCCCCCEEEEEeCCcCCcCHHHHHh---cCCccccccCCCCCCCeEEec----CCC----HHHHHHHh------ccCceE
Confidence 0155 59999999987754443221 2322 55553 222 78899988 568999
Q ss_pred EEEeccCCCCccc----ccHHHHHHHHHHcCCCEEEEecccc-cCCc--c--ccccccCccEEEEcCcccCcCCCCcEEE
Q 012991 194 AIIDHITSMPCVV----IPVRKLVKICRDEGVDQVFVDAAHA-MGSI--K--IDVKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 194 v~~~~~~n~tG~~----~~l~~i~~l~~~~~~~~~ivD~a~~-~g~~--~--~~~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
|++++++|++|.+ .++++|.++|++||+ ++|+|++|+ ++.. . .+.....+|+++ ++|+++++..+|++
T Consensus 205 vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi-~lI~Dev~~g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~ 281 (420)
T 2pb2_A 205 VVVEPIQGEGGVQAATPEFLKGLRDLCDEHQA-LLVFDEVQCGMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAM 281 (420)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEE
T ss_pred EEEeCCcCCCCeecCCHHHHHHHHHHHHHcCC-EEEEEcCCcCcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEE
Confidence 9999999888862 458899999999999 899999995 2211 1 122233578875 56987655458999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-C
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-G 343 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~ 343 (452)
++++++++. + .+. ..+ . +.+.+...+.+..++++.+. . +.+.++++++++++.+.|.++. +
T Consensus 282 ~~~~~l~~~-l-~~~---~~~------~--t~~~~~~~~aa~~a~L~~~~----~-~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 282 LTTQEIASA-F-HVG---SHG------S--TYGGNPLACAVAGAAFDIIN----T-PEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp EECHHHHTT-C-C-------C------C--EECCCHHHHHHHHHHHHHHS----S-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEhHHHHHh-h-cCC---CcC------c--ccCcCHHHHHHHHHHHHHHH----h-ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 998886664 2 111 000 0 01223333333334444433 2 5678888999999999997752 2
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
+.........+.++++.++.. ...+..++.+.|.+ .||.+..+ .++++|++++..
T Consensus 344 ~~~~~~~~~~g~~~~v~~~~~----~~~~~~~l~~~l~~-~Gi~v~~~--------------------~~~~iRl~~~~~ 398 (420)
T 2pb2_A 344 FDIFSDIRGMGLLIGAELKPK----YKGRARDFLYAGAE-AGVMVLNA--------------------GADVMRFAPSLV 398 (420)
T ss_dssp HCCEEEEEEETTEEEEEECGG----GTTCHHHHHHHHHH-TTEECEES--------------------STTEEEECCCTT
T ss_pred CCCeEEEEecceEEEEEECCC----chHHHHHHHHHHHH-CCCEEEeC--------------------CCCEEEEECCCC
Confidence 222111112367888887521 01146789999977 59998632 136899999888
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 012991 424 NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~ 442 (452)
++++|+++++++|++++++
T Consensus 399 ~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 399 VEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8999999999999998754
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-25 Score=231.92 Aligned_cols=313 Identities=12% Similarity=0.080 Sum_probs=226.8
Q ss_pred hhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE
Q 012991 78 LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS 157 (452)
Q Consensus 78 ~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~ 157 (452)
......+.++.+++++|.+ +.+++++|+++|+..++.++ +++||+|++++++|.|+..++.. .|++
T Consensus 203 ~~g~v~~~ee~la~l~G~d--~~i~~~~Gtt~a~~~~i~al--------~~~GD~Vlv~~~~h~s~~~~~~~----~G~~ 268 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGAD--RSWSVVVGTSGSNRTIMQAC--------MTDNDVVVVDRNCHKSIEQGLML----TGAK 268 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHH--------CCTTCEEEEESSCCHHHHHHHHH----HCCE
T ss_pred CccHHHHHHHHHHHHhCCC--ceEEECCcHHHHHHHHHHHh--------cCCCCEEEECCCchHHHHHHHHH----cCCE
Confidence 3456789999999999996 56778888889999999987 58999999999999998887644 5999
Q ss_pred EEEEeCCCCCCChH--------H-HHHHHHHHHhccc----cCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEE
Q 012991 158 VVEVQLPFPLASEE--------E-IINEFKKGIEKGK----KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQV 224 (452)
Q Consensus 158 v~~~~~~~~~~~~~--------~-~~~~l~~~i~~~~----~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ 224 (452)
++.++... ++.+ . .+++|++++++.+ ..+.++++++++++ |++|.+.|+++|+++|++||+ ++
T Consensus 269 ~v~v~~~~--~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~-~l 344 (755)
T 2vyc_A 269 PVYMVPSR--NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSD-RL 344 (755)
T ss_dssp EEEECCCB--CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCS-EE
T ss_pred EEEEeCCC--CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCC-EE
Confidence 99986531 1111 1 2788888886421 12334569999997 689999999999999999999 79
Q ss_pred EEecccccCCc--cc--cccc-cC--ccE------EEEcCcccCcCCCCcEEEEEecC--ccccCCCCCceeccCCCCcc
Q 012991 225 FVDAAHAMGSI--KI--DVKE-IG--ADF------YVSNLHKWFFCPPSVAFLYCRKS--ILSSDMHHPVVSHEFGNGLP 289 (452)
Q Consensus 225 ivD~a~~~g~~--~~--~~~~-~~--~d~------~~~s~~K~l~g~~G~G~l~~~~~--~~~~~l~~~~~~~~~~~~~~ 289 (452)
++|+||+.+.. +. +... .+ +|+ ++.|+||++.|+.|.|+++++++ .+.. ... .. .
T Consensus 345 ivDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~---~~~-~~------~ 414 (755)
T 2vyc_A 345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINF---SRF-NQ------A 414 (755)
T ss_dssp EEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCH---HHH-HH------H
T ss_pred EEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCH---HHH-HH------H
Confidence 99999975321 10 1111 34 566 99999999888888899988876 2221 000 00 0
Q ss_pred cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC---------CCcCCCccc--------
Q 012991 290 IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG---------TSLGSPPEI-------- 352 (452)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~---------~~~~~~~~~-------- 352 (452)
......+++++..+.++.+|++++... |.+.+.++..++++++++.|.++++ +++..+...
T Consensus 415 ~~~~~s~sp~~~~iaal~aA~~~l~~~--gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (755)
T 2vyc_A 415 YMMHATTSPLYAICASNDVAVSMMDGN--SGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKT 492 (755)
T ss_dssp HHHTSCSSCCHHHHHHHHHHHHHHSTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCE
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccc
Confidence 112234788888888888888887742 3567888899999999999998877 555544310
Q ss_pred ---------------------------------c------cceEEEEcCCcccc-----CChhhHHHHHHHHhhhcceEe
Q 012991 353 ---------------------------------C------AAMVMVGLPSRLRV-----MGEDDALRLRGHLRVRFGVEV 388 (452)
Q Consensus 353 ---------------------------------~------~~~~~~~~~~~~~~-----~~~~~~~~l~~~L~~~~gI~v 388 (452)
. ...+.+.++.. +. ..+.++..+.+.|.+ +||.+
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~-~~~G~~~~~g~~~~~l~~~L~~-~gI~~ 570 (755)
T 2vyc_A 493 YDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGM-GEDGELEETGVPAALVTAWLGR-HGIVP 570 (755)
T ss_dssp EEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCB-CTTSSBCSSCCCHHHHHHHHHT-TTCCC
T ss_pred cccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCC-CCCCCccccCCcHHHHHHHHHH-CCCEE
Confidence 0 13456666521 11 114667889999976 79987
Q ss_pred eecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 389 PIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.. ...+.+|++++.++|.+++++++++|+++.+.
T Consensus 571 e~--------------------~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~ 604 (755)
T 2vyc_A 571 TR--------------------TTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRH 604 (755)
T ss_dssp SE--------------------ECSSEEEEECCTTCCTTTTHHHHHHHHHHHHH
T ss_pred ee--------------------cCCCeEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 42 12468999999999999999999999999754
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=216.74 Aligned_cols=334 Identities=11% Similarity=0.061 Sum_probs=219.2
Q ss_pred CCCeEEeccCCC----C--CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCC-CCCcEEE--ecC
Q 012991 37 QHGVARINNGSF----G--SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NAD-DVGEISL--VDN 106 (452)
Q Consensus 37 ~~~~~~l~~~~~----~--~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-~~~~i~~--t~g 106 (452)
+.+++.|..+.+ + +.++.+.+++.+.+.. . ....|.......++++++++++ +.. ++++|++ |+|
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~---~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g 99 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET--E---TTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVG 99 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH--C---CCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCC--c---ccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCC
Confidence 467888887763 1 4568899998887643 1 1112333345678899999987 541 2579999 999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
|++|+.+++.++. .+.+||+|+++.++|++....+ ...|.+++.++... .+++.+ ++++++.+++.
T Consensus 100 ~~~a~~~~~~~~~------~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~~~- 166 (394)
T 2ay1_A 100 GTGALRQALELAR------MANPDLRVFVSDPTWPNHVSIM----NFMGLPVQTYRYFD--AETRGVDFEGMKADLAAA- 166 (394)
T ss_dssp HHHHHHHHHHHHH------HHCTTCCEEEEESCCHHHHHHH----HHHTCCEEEEECEE--TTTTEECHHHHHHHHHTC-
T ss_pred chhHHHHHHHHHH------hcCCCCEEEEcCCCChhHHHHH----HHcCCceEEEeccc--ccCCccCHHHHHHHHHhC-
Confidence 9999999998763 1248999999999999876554 44589999886521 122233 88999988642
Q ss_pred cCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc-------ccc-ccccCc-cEEEEcCcc
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI-------KID-VKEIGA-DFYVSNLHK 253 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~-------~~~-~~~~~~-d~~~~s~~K 253 (452)
.++++++++++++||||.++|. ++|+++|+++|+ ++|+|++++.... ++. +...+. ++++.|++|
T Consensus 167 --~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 243 (394)
T 2ay1_A 167 --KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGA-LPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSK 243 (394)
T ss_dssp --CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTT
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccC
Confidence 2357888899999999999874 478999999999 8999999986432 121 222233 467889999
Q ss_pred cCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---HhhcCHHHHHH
Q 012991 254 WFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---RFEGGIDGIMQ 325 (452)
Q Consensus 254 ~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~~~~g~~~~~~ 325 (452)
+ +|++| +|++++ +++++.. +...... ......+.++...+.++.++++... .+....+.+++
T Consensus 244 ~-~~~~G~riG~~~~~~~~~~~~~~-l~~~~~~--------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~ 313 (394)
T 2ay1_A 244 N-FGIYRERTGCLLALCADAATREL-AQGAMAF--------LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS 313 (394)
T ss_dssp T-TTCGGGCEEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred C-CcCcCCccceEEEEeCCHHHHHH-HHHHHHH--------HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 6 66666 599887 4543322 1000000 0000012233434444444444220 00124677888
Q ss_pred HHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 326 RNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
+++++++++.+.|.++. ++.+..+.. +.++++.++ ...+.+.|.+ +||.+.
T Consensus 314 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--g~~~~~~~~----------~~~~~~~l~~-~gi~v~------------- 367 (394)
T 2ay1_A 314 GMLRLREQLAGELRDLSGSDRFGFVAEHR--GMFSRLGAT----------PEQVKRIKEE-FGIYMV------------- 367 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTTTHHHHCC--SSEEECCCC----------HHHHHHHHHH-HCEECC-------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCeeEEcCCc--eEEEeeCCC----------HHHHHHHHHh-CCEEec-------------
Confidence 89999999999998874 355543332 556665442 2456666655 599984
Q ss_pred CCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 403 AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
..+|++++ .++++|+++++++|+++
T Consensus 368 -----------~~~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 368 -----------GDSRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp -----------TTCEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred -----------CCCeEEee-cCCHhhHHHHHHHHHHc
Confidence 13699988 47899999999999876
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=215.59 Aligned_cols=333 Identities=12% Similarity=0.052 Sum_probs=208.1
Q ss_pred HHHHHhhhccCCC-CeEEeccCC-CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE
Q 012991 26 EAEIRDEFSHHQH-GVARINNGS-FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISL 103 (452)
Q Consensus 26 ~~~ir~~~~~~~~-~~~~l~~~~-~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~ 103 (452)
...+|+..+..+. +++.++.+. ..+.|+.+.+++..+ . .+ ....+++++.+++++|+++++++++
T Consensus 15 ~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~~~-----~------~~--~~~~~~~~~~~a~~~g~~~~~~~~~ 81 (374)
T 2aeu_A 15 RKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLNTY-----I------GS--SYFAEKVNEYGLKHLGGDENDKCVG 81 (374)
T ss_dssp HHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHTST-----T------HH--HHHHHHHHHHHHHHHTCCTTEEEEE
T ss_pred HHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHHHh-----c------Cc--hHHHHHHHHHHHHHhCCCCcceEEE
Confidence 3456777766666 677776554 557888899988621 0 01 1223567777889999842478999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhc
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEK 183 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~ 183 (452)
++|||+|+..++.+ + +||+|+++.++|++....+. .+...|++++.+ . + +++++++ +
T Consensus 82 ~~ggt~a~~~~~~~---------~-~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v-~----d-----~~~l~~~-~- 138 (374)
T 2aeu_A 82 FNRTSSAILATILA---------L-KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES-D----K-----VGEILNK-I- 138 (374)
T ss_dssp ESSHHHHHHHHHHH---------H-CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE-S----C-----HHHHHTT-C-
T ss_pred EcChHHHHHHHHHh---------C-CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe-C----C-----HHHHHhc-C-
Confidence 99999999999884 3 78999999998877544444 356779998887 2 1 4666654 2
Q ss_pred cccCCCceEE-EEEeccCCCCc-ccccHHHHHHHHHHcCCCEEEEecccccCCc-cc-c--ccccCccEEEEcCcccCcC
Q 012991 184 GKKDGKMIRL-AIIDHITSMPC-VVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-KI-D--VKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 184 ~~~~~~~~~l-v~~~~~~n~tG-~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~-~--~~~~~~d~~~~s~~K~l~g 257 (452)
+++++ |++++++||+| ...++++|.++|++||+ ++|+|++++.+.. +. . ...+++|+++.|+||++.|
T Consensus 139 -----~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g 212 (374)
T 2aeu_A 139 -----DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEA-IVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG 212 (374)
T ss_dssp -----CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTC-CEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred -----CCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCC-EEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence 47899 99999999999 88899999999999999 7999999876531 11 1 2234689999999998766
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH---
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM--- 334 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l--- 334 (452)
+ ++|++++++++++. + .... ..+.++++...+.++.++++. . ..+.+ ++..++++.+
T Consensus 213 ~-~~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~al~~---~--~~~~~-~~~~~~~~~~~~~ 272 (374)
T 2aeu_A 213 P-RGGLLAGKKELVDK-I-YIEG-----------TKFGLEAQPPLLAGIYRALKN---F--NLERI-RKAFERAKNFDLS 272 (374)
T ss_dssp C-SCEEEEEEHHHHHH-H-HHHH-----------HTTTCBCCHHHHHHHHHHHHH---C--CHHHH-HHHHHHHHHCCCH
T ss_pred c-ceEEEEECHHHHHH-H-HHhh-----------ccccCCCCHHHHHHHHHHHHH---H--hHHHH-HHHHHHHHHHHHH
Confidence 5 57999999887765 1 1110 001122333333333334333 2 22222 2233333333
Q ss_pred -HHHHHH----H---cCCCcCCCcccccceEEE-EcCCccccCChh---hHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 335 -ARMLAN----A---WGTSLGSPPEICAAMVMV-GLPSRLRVMGED---DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 335 -~~~L~~----~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
++.|.+ + .++.+..++. +.+++. ..+ ... +..+++..+.+++||.+.++..+.
T Consensus 273 ~~~~l~~~L~~~~~~~g~~~~~~~~--g~~~~~~~~~------~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~------- 337 (374)
T 2aeu_A 273 KIEKLNKELKAIDDNINIVYERTPT--GFVIKRVYKD------DTINIKKLIEIGFNLLKNYGIITITVAGMP------- 337 (374)
T ss_dssp HHHHHHHHHTTTCTTEEEEEEECSS--EEEEEEEESS------HHHHHHHHHHHHHHHHHHHCEECSTTSSSC-------
T ss_pred HHHHHHHhhhhhhhccCcceeeCCc--eEEEEeeccc------ccccccchHHHHHHHHHhCCEEEecCCCCC-------
Confidence 344433 2 1233222222 333222 222 111 122355444444699987554321
Q ss_pred CCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHHHHhcc
Q 012991 403 AGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~~ 443 (452)
...+++||+++.. .++.+++++.+++++.+++-
T Consensus 338 --------~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 338 --------GASKSLRIDLTSRDAERIDDNYIIKAIVESIKMA 371 (374)
T ss_dssp --------SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHH
T ss_pred --------CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 2346899999742 23345999999999888653
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=218.27 Aligned_cols=344 Identities=10% Similarity=0.030 Sum_probs=212.2
Q ss_pred HHHHHhhhccC-CCCeEEeccCCC-C-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC--
Q 012991 26 EAEIRDEFSHH-QHGVARINNGSF-G-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-- 96 (452)
Q Consensus 26 ~~~ir~~~~~~-~~~~~~l~~~~~-~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 96 (452)
+-.+.+.+... .+.++.|..+.+ . +..+.+.+++.+.... ... ..|....+..++|++++++++..
T Consensus 15 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~---~~~--~~Y~~~~g~~~lr~~ia~~~~~~~~ 89 (401)
T 7aat_A 15 ILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK---KMD--KEYLPIAGLADFTRASAELALGENS 89 (401)
T ss_dssp HHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT---TCC--CCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhccc---ccc--cCCCCCCCCHHHHHHHHHHhcCCCc
Confidence 44444455432 344778776664 2 2234577777665432 111 12223344677888888887642
Q ss_pred ---CCCcEEE--ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH
Q 012991 97 ---DVGEISL--VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE 171 (452)
Q Consensus 97 ---~~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~ 171 (452)
++++|++ |+|||+|+.+++.++.. .+++||+|++++|+|.++...+ +..|.+++.+++.. .+++
T Consensus 90 ~~~~~~~i~~v~t~G~~~al~~~~~~l~~-----~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~~~~~~--~~~~ 158 (401)
T 7aat_A 90 EAFKSGRYVTVQGISGTGSLRVGANFLQR-----FFKFSRDVYLPKPSWGNHTPIF----RDAGLQLQAYRYYD--PKTC 158 (401)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHHHHHHHH-----HCTTCCEEEEEESCCTTHHHHH----HHTTCEEEEEECEE--TTTT
T ss_pred cccccCceEEEecCcchHHHHHHHHHHHH-----hccCCCEEEEcCCCchhHHHHH----HHcCCeeEeeeeec--cccC
Confidence 1578877 99999999998876631 2478999999999999876665 44699999996521 1223
Q ss_pred HH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc-c-----cc--
Q 012991 172 EI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK-I-----DV-- 239 (452)
Q Consensus 172 ~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~-~-----~~-- 239 (452)
.+ ++.+++.+++. .+++++|++++++||||.+++ +++|+++|++||+ ++|+|+++...... . .+
T Consensus 159 ~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~-~li~Deay~~~~~~~~~~~~~~~~~ 234 (401)
T 7aat_A 159 SLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNL-LAYFDMAYQGFASGDINRDAWALRH 234 (401)
T ss_dssp EECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred ccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc-EEEEccccccccCCCccccHHHHHH
Confidence 34 77777777642 467899999999999999876 6678899999999 79999997643321 1 01
Q ss_pred --cccCccEEEEcCcccCcCCCC--cEEEEEe---cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 240 --KEIGADFYVSNLHKWFFCPPS--VAFLYCR---KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 240 --~~~~~d~~~~s~~K~l~g~~G--~G~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
...+..+++.|+||. +|++| +|++++. ++.... +...... ....+...++.. +...+...
T Consensus 235 ~~~~~~~~i~~~S~sK~-~~~~G~RiG~l~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~ 301 (401)
T 7aat_A 235 FIEQGIDVVLSQSYAKN-MGLYGERAGAFTVICRDAEEAKR-VESQLKI--------LIRPMYSNPPMN---GARIASLI 301 (401)
T ss_dssp HHHTTCCCEEEEECTTT-SCCGGGCEEEEEEECSSHHHHHH-HHHHHHH--------HHHHHHSSCCHH---HHHHHHHH
T ss_pred HHhcCCcEEEEecCCcc-cccccCceEEEEEEeCCHHHHHH-HHHHHHH--------HHHhccCCCChH---HHHHHHHH
Confidence 122456788999995 77777 7888863 221111 0000000 000011122221 22222222
Q ss_pred HHH------hhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhh
Q 012991 313 VSR------FEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR 383 (452)
Q Consensus 313 ~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 383 (452)
+.. +....+.++++++++++++.+.|.++. ++.+..+.. +.++|..+ +.+.+ ..|.++
T Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~-~~ll~~ 368 (401)
T 7aat_A 302 LNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQI--GMFCFTGL----------KPEQV-ERLTKE 368 (401)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCC--SSEEECCC----------CHHHH-HHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCc--ceEEecCC----------CHHHH-HHHHHh
Confidence 210 011356778888999999999998862 233333322 44555333 34445 444445
Q ss_pred cceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 384 FGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 384 ~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+||.+. +.+|+|++..+++ +|++++++|++++
T Consensus 369 ~gi~v~------------------------~~~Ris~~~~~~~-~i~~~~~~l~~~~ 400 (401)
T 7aat_A 369 FSIYMT------------------------KDGRISVAGVASS-NVGYLAHAIHQVT 400 (401)
T ss_dssp HCEECC------------------------TTCEEEGGGCCTT-THHHHHHHHHHHH
T ss_pred CCEecc------------------------CCCeEEeccCChh-hHHHHHHHHHHHh
Confidence 699983 2379999876554 4999999999876
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-24 Score=208.17 Aligned_cols=340 Identities=9% Similarity=0.039 Sum_probs=218.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
....++.+.+++.+.+.... +...+...++++.++++++.+ ++++++|||+|+..++.++.... ...+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~l~~~la~~~~~~---~~i~~~sGt~a~~~al~~~~~~~-~~~~ 77 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLDSKM--------FTMGEYVKQYETQFAKTFGSK---YAVMVSSGSTANLLMIAALFFTK-KPRL 77 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHTC--------CSSCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTSSS-SCSC
T ss_pred CCCCCHHHHHHHHHHHHcCC--------CCCChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHHhhh-hcCC
Confidence 34566779999888775421 223566899999999999985 67889999999999998762100 0015
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh-HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE-EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~-~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
++|++|+++.++|+++..++. ..|.+++.+++ +.+ +.+ +++|++++ .+++++|++++ ++|.
T Consensus 78 ~~g~~Vi~~~~~~~~~~~~~~----~~g~~~~~~~~----~~~~~~~d~~~l~~~i------~~~~~~v~~~~---~~g~ 140 (390)
T 3b8x_A 78 KKGDEIIVPAVSWSTTYYPLQ----QYGLRVKFVDI----DINTLNIDIESLKEAV------TDSTKAILTVN---LLGN 140 (390)
T ss_dssp CTTCEEEEESSSCHHHHHHHH----HTTCEEEEECB----CTTTCSBCHHHHHHHC------CTTEEEEEEEC---GGGC
T ss_pred CCcCEEEECCCCcHHHHHHHH----HcCCEEEEEec----CccccCcCHHHHHHHh------CcCCeEEEEEC---CccC
Confidence 789999999999999887764 46999999954 322 344 89999999 56899999874 5688
Q ss_pred cccHHHHHHHHHHcCCCEEEEecccccCCccccccccCc--cEEEEcC--cccCcCCCCcEEEEEec-CccccCCCCCce
Q 012991 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGA--DFYVSNL--HKWFFCPPSVAFLYCRK-SILSSDMHHPVV 280 (452)
Q Consensus 206 ~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~--d~~~~s~--~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~ 280 (452)
..|+++|.++|+++|+ ++|+|++|+.|... +....+. |+.++|+ +|.+.++.| |+++.++ ++.+. + .+..
T Consensus 141 ~~~~~~i~~l~~~~~~-~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~-~-~~~~ 215 (390)
T 3b8x_A 141 PNNFDEINKIIGGRDI-ILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHI-L-LCIR 215 (390)
T ss_dssp CCCHHHHHHHHTTSCC-EEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHH-H-HHHT
T ss_pred hhhHHHHHHHHHHcCC-EEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHH-H-HHHH
Confidence 8999999999999999 79999999988765 4444443 6666543 454666666 8888876 44332 0 1110
Q ss_pred eccCC--CC-----------------cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 281 SHEFG--NG-----------------LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 281 ~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
. .| .. .+......|......-+....++..+. .++.+.++.+++++++.+.|.++
T Consensus 216 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----~l~~~~~~~~~~~~~l~~~L~~~ 289 (390)
T 3b8x_A 216 A--HGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLK----KLPRFISVRRKNAEYFLDKFKDH 289 (390)
T ss_dssp B--TTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred h--cCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 11 00 000000012111111111222222333 35667888899999999999887
Q ss_pred cCCCcCCCccccc-ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC-CCCC--------CC--
Q 012991 342 WGTSLGSPPEICA-AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA-GARD--------KD-- 409 (452)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~-~~~~--------~~-- 409 (452)
+++++..++.... ..+.+.++.. .+.+..++.+.|.+ .||.++..+.. ..|.. +..+ ..
T Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~l~~~L~~-~gI~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 360 (390)
T 3b8x_A 290 PYLDVQQETGESSWFGFSFIIKKD----SGVIRKQLVENLNS-AGIECRPIVTG----NFLKNTDVLKYFDYTVHNNVDN 360 (390)
T ss_dssp SSEEECCCCSBCCCCEEEEEECTT----SCCCHHHHHHHHHH-TTBCCBCSTTS----SGGGCHHHHTTCEEEESSCCHH
T ss_pred CCcccCCCCCCcccEEEEEEecCc----CcccHHHHHHHHHH-CCCCeeeecCC----chhhcchhhhcCCCCCcCCChH
Confidence 7777655432112 2244444410 13467789999976 59998754321 11222 1100 00
Q ss_pred --CCccceEEecccccCCHHHHHHHHHHH
Q 012991 410 --GIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 410 --~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
....+.||++++..+|++||++++++|
T Consensus 361 ~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 361 AEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 012357999999999999999999886
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=220.66 Aligned_cols=339 Identities=15% Similarity=0.106 Sum_probs=212.2
Q ss_pred CCCCcHHHHHHHHHHHHHHh--cCCchh-hh--hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccc
Q 012991 48 FGSCPKSVLADQQKWQLKFL--QQPDDF-YF--NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF 122 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~--~~~~~~-~~--~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~ 122 (452)
.++.|+.|.+++.+.+.... ++++.. +. .......+.++++++++++++ ++.+++ ++|++|+..++.++
T Consensus 39 ~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~v~~-~sGs~a~~~a~~~~---- 112 (420)
T 3gbx_A 39 ENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD-YANVQP-HSGSQANFAVYTAL---- 112 (420)
T ss_dssp CCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCS-EEECCC-SSHHHHHHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCC-CceeEe-cCcHHHHHHHHHHh----
Confidence 33467889999987763211 222221 11 122344566789999999995 455544 55689999998876
Q ss_pred ccCCCCCCCEEEEeCCcchhHHHHHHHH-HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 123 TEGRFHRNDTVLMLHCAFQAVKKSIQAY-VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 123 ~~~~~~~g~~Vl~~~~~~~s~~~~~~~~-a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
+++||+|+++.++|.++......+ ....+..+..++. +.++.+ +++|++++++ .++++|++++++
T Consensus 113 ----~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~d~~~l~~~i~~-----~~~~~v~~~~~~ 179 (420)
T 3gbx_A 113 ----LQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI----DESGKIDYDEMAKLAKE-----HKPKMIIGGFSA 179 (420)
T ss_dssp ----CCTTCEEEEEEEC------------CHHHHSEEEEEEE----CTTCSCCHHHHHHHHHH-----HCCSEEEECCTT
T ss_pred ----cCCCCEEEecchhhcceeccchhhhhcccceeEEeccC----CccCCcCHHHHHHHHHh-----cCCeEEEEecCc
Confidence 589999999999998854222211 1112344444432 233334 8999999953 358999998877
Q ss_pred CCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCCCcEEEEEec---Cccc
Q 012991 201 SMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRK---SILS 272 (452)
Q Consensus 201 n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~---~~~~ 272 (452)
|+ ...|+++|.++|++||+ ++|+|++|+.|.. +.... .+|++++|+||+++||.| |+++.++ ++..
T Consensus 180 ~~--~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~ 253 (420)
T 3gbx_A 180 YS--GVVDWAKMREIADSIGA-YLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYK 253 (420)
T ss_dssp CC--SCCCHHHHHHHHHHTTC-EEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHH
T ss_pred cC--CccCHHHHHHHHHHcCC-EEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHH
Confidence 64 57899999999999999 8999999876543 22222 379999999999778887 8988887 3433
Q ss_pred cCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc
Q 012991 273 SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI 352 (452)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 352 (452)
. + .... +.. ..++++...+.++..++..... .+++.+++++.++++++.+.|.+. ++++..+. .
T Consensus 254 ~-~-~~~~---~~~-------~~~~~~~~~~~a~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~ 317 (420)
T 3gbx_A 254 K-L-NSAV---FPS-------AQGGPLMHVIAGKAVALKEAME--PEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGG-T 317 (420)
T ss_dssp H-H-HHHH---C-----------CCCCHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS-C
T ss_pred H-h-hhhc---CCC-------CCCCcchhHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCC-C
Confidence 2 1 1100 000 0133444344444444433321 256788899999999999999884 77765432 2
Q ss_pred ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC----CHHH
Q 012991 353 CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN----TLED 428 (452)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~----t~~d 428 (452)
.++++++.++. .+.+...+.+.|.+ +||.+.....+...+. ...++.+|++++..+ ++++
T Consensus 318 ~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~----------~~~~~~iRi~~~~~~~~~~~~~~ 381 (420)
T 3gbx_A 318 ENHLFLLDLVD-----KNLTGKEADAALGR-ANITVNKNSVPNDPKS----------PFVTSGIRIGSPAVTRRGFKEAE 381 (420)
T ss_dssp SSSEEEEECGG-----GTCCHHHHHHHHHH-TTEECEEECCTTCSSC----------TTTCSEEEEECHHHHHTTCCHHH
T ss_pred CCeEEEEEcCC-----CCCCHHHHHHHHHH-CCcEeccccCCCCccc----------cCCCcceEEecchhcccCCCHHH
Confidence 26677777641 23466778888865 5999876332211100 122346999987653 4899
Q ss_pred HHHHHHHHHHHHhcc
Q 012991 429 YEKFRDAVILLVEEG 443 (452)
Q Consensus 429 i~~l~~~l~~~~~~~ 443 (452)
+++++++|+++++..
T Consensus 382 i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 382 VKELAGWMCDVLDNI 396 (420)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999998764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-27 Score=236.02 Aligned_cols=336 Identities=12% Similarity=0.052 Sum_probs=225.6
Q ss_pred CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CCCCCcEEEecChhHHH
Q 012991 39 GVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--ADDVGEISLVDNATTAA 111 (452)
Q Consensus 39 ~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~i~~t~g~t~a~ 111 (452)
.++.|..+.++ ..|+.+.+++.+.+... ...|... ..++++.+++++ | .+ +++|++|+|+++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~y~~~----~~~l~~~la~~l~~~~g~~~~-~~~v~~~~g~~~a~ 102 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL----VYGYTYA----SDELLQAVLDWEKSEHQYSFD-KEDIVFVEGVVPAI 102 (392)
Confidence 67788777665 45666888888776431 1112211 455666666654 5 33 67999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++ .++|++|+++.+.|++....+. ..|.+++.++.... +....+ ++++++.++ ..+
T Consensus 103 ~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~-~g~~~~d~~~l~~~l~-----~~~ 164 (392)
T 3b1d_A 103 SIAIQAF--------TKEGEAVLINSPVYPPFARSVR----LNNRKLVSNSLKEE-NGLFQIDFEQLENDIV-----END 164 (392)
Confidence 9999876 4789999999999998766553 45888888754210 011224 788888884 257
Q ss_pred eEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccccc---c--cCccEEEEcCcccCcCC
Q 012991 191 IRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVK---E--IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~---~--~~~d~~~~s~~K~l~g~ 258 (452)
+++|++++++||||.++| +++|+++|++||+ ++|+|++++.... ...+. . .+.++++.|++|++ |.
T Consensus 165 ~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~ 242 (392)
T 3b1d_A 165 VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHV-ILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTF-NI 242 (392)
Confidence 889999999999999987 7889999999999 7999999876332 11221 1 34568889999974 43
Q ss_pred CC--cEEEEEecC-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKS-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 259 ~G--~G~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
+| +|+++++++ +++. + ..... ....++++...+.+..++++.... .++.++++++++++++.
T Consensus 243 ~G~r~G~~~~~~~~~~~~-~-~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~ 307 (392)
T 3b1d_A 243 AGTKNSYAIIENPTLCAQ-F-KHQQL----------VNNHHEVSSLGYIATETAYRYGKP---WLVALKAVLEENIQFAV 307 (392)
Confidence 44 788888654 6654 2 11100 000123344444444445543222 46777888889999999
Q ss_pred HHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 336 RMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 336 ~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
+.|.+ ++++.+..+.. +.++|+.++. .+.+..++.+.|.+++||.+.++..+.. ..++
T Consensus 308 ~~l~~~~~~~~~~~~~~--~~~~~i~~~~-----~~~~~~~l~~~l~~~~gi~v~~g~~f~~--------------~~~~ 366 (392)
T 3b1d_A 308 EYFAQEAPRLKVMKPQG--TYLIWLDFSD-----YGLTDDALFTLLHDQAKVILNRGSDYGS--------------EGEL 366 (392)
Confidence 99987 66777655543 4455676651 1245667888886446999976554421 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++|+++.. +++++++++++|+++++
T Consensus 367 ~iRi~~~~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 367 HARLNIAA--PKSLVEEICKRIVCCLP 391 (392)
Confidence 89999875 67889999999988764
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=220.37 Aligned_cols=348 Identities=16% Similarity=0.109 Sum_probs=213.3
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCchh-hh-hh-hhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFL--QQPDDF-YF-NS-LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~~-~~-~~-~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
.+.|.. +..+.|+.|.+++.+.+.... +++... +. .. .....+.+++.++++++.+ ...++++||++|+..+
T Consensus 34 ~i~l~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~v~~~~Gs~a~~~a 110 (425)
T 3ecd_A 34 QVELIA-SENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAG--HANVQPHSGAQANGAV 110 (425)
T ss_dssp SEECCT-TCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHH
T ss_pred ceeeec-ccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCC--CceeecCchHHHHHHH
Confidence 455543 334458889999987663211 112111 11 11 1233455668899999985 3335689999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc--EEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG--SVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~--~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
+.++ +++||+|+++.++|+++...... ....|. ++..++. .. +.+.+ +++|++++++ +++
T Consensus 111 l~~~--------~~~gd~Vi~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~--~~-~~~~~d~~~l~~~i~~-----~~~ 173 (425)
T 3ecd_A 111 MLAL--------AKPGDTVLGMSLDAGGHLTHGAK-PALSGKWFNALQYGV--SR-DTMLIDYDQVEALAQQ-----HKP 173 (425)
T ss_dssp HHHH--------CCTTCEEEEECC-------------------CEEEEECC--CT-TTSSCCHHHHHHHHHH-----HCC
T ss_pred HHHc--------cCCCCEEEEcccccccceecchh-hhhcccceeeeecCC--Cc-ccCccCHHHHHHHHhh-----cCC
Confidence 9876 58999999999999883322211 112344 4445532 11 12333 8999999852 468
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc--ccc-cCccEEEEcCcccCcCCCCcEEEEEec
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID--VKE-IGADFYVSNLHKWFFCPPSVAFLYCRK 268 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~--~~~-~~~d~~~~s~~K~l~g~~G~G~l~~~~ 268 (452)
++|++++++| |...++++|.++|++||+ ++|+|++|+.|....+ ... ..+|++++|+||++.|+.| |+++.++
T Consensus 174 ~~v~~~~~~~--~~~~~l~~i~~l~~~~~~-~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-g~~~~~~ 249 (425)
T 3ecd_A 174 SLIIAGFSAY--PRKLDFARFRAIADSVGA-KLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRG-GFVLTND 249 (425)
T ss_dssp SEEEEECSCC--CSCCCHHHHHHHHHHHTC-EEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEESC
T ss_pred cEEEEccccC--CCcCCHHHHHHHHHHcCC-EEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCc-EEEEeCC
Confidence 8999998777 678899999999999999 7999999876543211 111 1378999999999877775 8888875
Q ss_pred C-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 269 S-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 269 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+ +... + .... +. ...++++...+.++..++..... .+++.+.++.+++++++.+.|.+. ++++.
T Consensus 250 ~~~~~~-~-~~~~---~~-------~~~~~~~~~~~~a~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (425)
T 3ecd_A 250 EEIAKK-I-NSAV---FP-------GLQGGPLMHVIAGKAVAFGEALT--DDFKTYIDRVLANAQALGDVLKAG-GVDLV 314 (425)
T ss_dssp HHHHHH-H-HHHH---C------------CCCHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHHHT-TCEEG
T ss_pred HHHHHH-H-Hhhh---Cc-------cccCCccHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhC-CCeec
Confidence 3 3332 1 1110 00 01123444344444444433321 256788899999999999999885 77665
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC--
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT-- 425 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t-- 425 (452)
.+.. .++++++.++. .+.+...+.+.|.+ +||.+..+..+..... ....+++|++++..++
T Consensus 315 ~~~~-~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~~p~~~~~----------~~~~~~iRi~~~~~~~~~ 377 (425)
T 3ecd_A 315 TGGT-DNHLLLVDLRP-----KGLKGAQVEQALER-AGITCNKNGIPFDPEK----------PTITSGIRLGTPAGTTRG 377 (425)
T ss_dssp GGSC-SSSEEEEECGG-----GTCCHHHHHHHHHH-TTEECEECCCTTCSSC----------TTTCSEEEEESHHHHHTT
T ss_pred cCCC-CceEEEEEeCC-----CCCCHHHHHHHHHH-cCCEecccccCCCCCC----------CCCccceeccchhheecc
Confidence 4332 26678877752 13466778888865 5999975443211000 1234689999665544
Q ss_pred --HHHHHHHHHHHHHHHhcc
Q 012991 426 --LEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 426 --~~di~~l~~~l~~~~~~~ 443 (452)
++++++++++|+++++..
T Consensus 378 ~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 378 FGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 899999999999998753
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=215.80 Aligned_cols=335 Identities=13% Similarity=0.057 Sum_probs=215.3
Q ss_pred CCCeEEeccCC------CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCC--cEEE
Q 012991 37 QHGVARINNGS------FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVG--EISL 103 (452)
Q Consensus 37 ~~~~~~l~~~~------~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~--~i~~ 103 (452)
.++++.|..|. ..+.++.|.+++.+.+... .. ..|....+..++++.++++++.. +++ +|++
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~---~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 122 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAG---LP--RGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQ 122 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTC---CC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccC---CC--CCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEE
Confidence 45788888772 2244488999998877531 11 12333445677888888877432 146 8999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|||+|+.+++..+. .+++||+|++++|.|.+....+ +..|.+++.++... ++++.+ ++.+++.++
T Consensus 123 t~G~t~al~~~~~~~~------~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~ 190 (420)
T 4f4e_A 123 ALGGTGALKIGADFLR------TLNPKAKVAISDPSWENHRALF----DMAGFEVVAYPYYD--AKTNGVNFDGMLAALN 190 (420)
T ss_dssp EEHHHHHHHHHHHHHH------HHCTTCCEEEEESCCHHHHHHH----HHTTCCEEEEECEE--TTTTEECHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHH------HhCCCCEEEEeCCCcHhHHHHH----HHcCCeEEEeeeec--cccCccCHHHHHHHHH
Confidence 9999999999954321 2489999999999999875555 44699999996521 122333 899999995
Q ss_pred ccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc-----c---c-cccCccEEEEc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI-----D---V-KEIGADFYVSN 250 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-----~---~-~~~~~d~~~~s 250 (452)
+. .++++++++++++||||.+++ +++|+++|++||+ ++|+|++++...... . + ...+.++++.|
T Consensus 191 ~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 266 (420)
T 4f4e_A 191 GY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRL-VPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSS 266 (420)
T ss_dssp TC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred hC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCc-EEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEe
Confidence 42 367899999999999999987 5578889999999 899999986543221 1 1 12245688899
Q ss_pred CcccCcCCCC--cEEEEEe---cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---HhhcCHHH
Q 012991 251 LHKWFFCPPS--VAFLYCR---KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---RFEGGIDG 322 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~~~~g~~~ 322 (452)
++|. +|++| +|++++. ++++.. +...... ........++...+.++..++.... .+....+.
T Consensus 267 ~SK~-~~~~G~RiG~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 336 (420)
T 4f4e_A 267 FSKS-FSLYGERVGALSIITDSKDEAAR-VLSQLKR--------VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGE 336 (420)
T ss_dssp CTTT-TTCGGGCEEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCcc-CcCcCCCcEEEEEEcCCHHHHHH-HHHHHHH--------HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9996 77777 7887652 232221 0000000 0000012233333333333332210 00113677
Q ss_pred HHHHHHHHHHHHHHHHHHH---cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANA---WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
++++++++++++.+.|.++ .++.+..+.. +.++|+.+ +...+.+.|.+ +||.+..
T Consensus 337 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--g~~~~~~~----------~~~~~~~~l~~-~gI~v~~--------- 394 (420)
T 4f4e_A 337 MRDRIRAMRNGLVERLKAAGIERDFSFINAQR--GMFSYSGL----------TSAQVDRLREE-FGIYAVS--------- 394 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSC--SSEEECCC----------CHHHHHHHHHH-HCEECCT---------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeECCCc--cEEEEeCC----------CHHHHHHHHHh-CCEEecC---------
Confidence 8889999999999999887 3555443333 55555433 34556666655 5999841
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..|+|++.. +.++|++++++|++++
T Consensus 395 ---------------~~Ris~~~~-~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 395 ---------------TGRICVAAL-NTRNLDVVANAIAAVL 419 (420)
T ss_dssp ---------------TSEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ---------------CCeEEEecC-CHHHHHHHHHHHHHHh
Confidence 129998754 5677999999999876
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-24 Score=208.28 Aligned_cols=325 Identities=10% Similarity=0.062 Sum_probs=215.3
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|..++.+.+++.+.+.... .. +.....+..++++++++++++. +++++|+||++|+..++.++.....+. -
T Consensus 50 lG~~~p~v~~a~~~~~~~~~-~~---~~~~~~~~~~~l~~~la~~~~~---~~v~~~~gg~ea~~~al~~~~~~~~~~-g 121 (395)
T 3nx3_A 50 LGYNHAKFNAKIKAQVDKLL-HT---SNLYYNENIAAAAKNLAKASAL---ERVFFTNSGTESIEGAMKTARKYAFNK-G 121 (395)
T ss_dssp TCBSCHHHHHHHHHHHTTCS-CC---CTTSBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHT-T
T ss_pred CCCCCHHHHHHHHHHHHhcc-cc---ccccCCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhcc-C
Confidence 45567889999988775421 11 1122456788999999999974 699999999999999998763211000 0
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHH---------HhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEec
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYV---------TRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a---------~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
.++++|++.++.|++.......+. ...+..+..+ +.++ +++|++++ .+++++|++++
T Consensus 122 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l------~~~~~~v~~~~ 187 (395)
T 3nx3_A 122 VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFA----KYND----ISSVEKLV------NEKTCAIILES 187 (395)
T ss_dssp CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEE----CTTC----HHHHHTTC------CTTEEEEEEES
T ss_pred CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEe----CCCC----HHHHHHhc------cCCeEEEEEeC
Confidence 457899999999887543322110 0112455566 3333 78899888 57899999999
Q ss_pred cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 199 ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 199 ~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
+++++|.+.+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++++| |++.++.++|+++++++
T Consensus 188 ~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~~ 264 (395)
T 3nx3_A 188 VQGEGGINPANKDFYKALRKLCDEKDI-LLIADEIQCGMGRSGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVINQK 264 (395)
T ss_dssp EECTTSCEECCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEECHH
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEecccCCCcCCcchhHHhcCCCCCEEEec--ccccCCCceEEEEEchh
Confidence 9999999987 9999999999999 899999987 43221 22223346777654 88766556899999988
Q ss_pred c-cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcC
Q 012991 270 I-LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSLG 347 (452)
Q Consensus 270 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~ 347 (452)
+ .+. + .+.. .+. +.+.+...+.+..++++.+.. +.+.++.+++.+++++.|.++.. ....
T Consensus 265 ~~~~~-~-~~~~---~~~--------~~~~~~~~~~aa~aal~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (395)
T 3nx3_A 265 VASNS-L-EAGD---HGS--------TYGGNPLVCAGVNAVFEIFKE-----EKILENVNKLTPYLEQSLDELINEFDFC 326 (395)
T ss_dssp HHHHH-S-CTTC---CSS--------CBSCCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred hhhhh-c-CCcc---cCC--------CCCCCHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7 554 2 2210 000 012233334444445554432 34456666777777777765421 1111
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
......+.++++.++ ...+..++.+.|.++ ||.+..+. ++++|++++..+|++
T Consensus 327 ~~~~~~g~~~~~~~~------~~~~~~~~~~~l~~~-Gi~v~~~~--------------------~~~iRi~~~~~~t~e 379 (395)
T 3nx3_A 327 KKRKGLGFMQGLSLD------KSVKVAKVIQKCQEN-ALLLISCG--------------------ENDLRFLPPLILQKE 379 (395)
T ss_dssp EEEEEETTEEEEEEC------TTSCHHHHHHHHHHT-TEECEEET--------------------TTEEEECCCTTCCHH
T ss_pred EEEEeEEEEEEEEeC------CcchHHHHHHHHHHC-CCEEecCC--------------------CCEEEEECCCCCCHH
Confidence 111223678888876 233567888888775 99986431 369999999889999
Q ss_pred HHHHHHHHHHHHHhc
Q 012991 428 DYEKFRDAVILLVEE 442 (452)
Q Consensus 428 di~~l~~~l~~~~~~ 442 (452)
|+++++++|++++++
T Consensus 380 ~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 380 HIDEMSEKLRKALKS 394 (395)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998863
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-24 Score=211.13 Aligned_cols=324 Identities=11% Similarity=0.143 Sum_probs=216.2
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc-cccCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG-FTEGRF 127 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~-~~~~~~ 127 (452)
+..++.+.+++.+.+.... ..+..+ ..+...++++.++++++. +++++++||++|+..++.++... +.+...
T Consensus 91 gh~~p~v~~Ai~~~~~~~~-~~~~~~---~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~~~~~~~~~~g~ 163 (439)
T 2oat_A 91 GHCHPKIVNALKSQVDKLT-LTSRAF---YNNVLGEYEEYITKLFNY---HKVLPMNTGVEAGETACKLARKWGYTVKGI 163 (439)
T ss_dssp CBTCHHHHHHHHHHHTTCS-CCCTTS---EESSHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhcC-cccCcc---CCHHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence 3367789999988875421 111111 245578899999999974 68999999999999999876310 000012
Q ss_pred CCC-CEEEEeCCcchhHHHHHHHHHHhcC------------cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 128 HRN-DTVLMLHCAFQAVKKSIQAYVTRAG------------GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 128 ~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g------------~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
.+| ++|++.++.|++....... ..| ..+..+ +.++ +++|++.++ .+++++|
T Consensus 164 ~~g~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~p~~~~v~~~----~~~d----~~~le~~l~-----~~~~~~v 227 (439)
T 2oat_A 164 QKYKAKIVFAAGNFWGRTLSAIS---SSTDPTSYDGFGPFMPGFDII----PYND----LPALERALQ-----DPNVAAF 227 (439)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHT---TCCCHHHHTTSCSCCTTEEEE----CSSC----HHHHHHHTT-----STTEEEE
T ss_pred CCCCCeEEEEcCCCCCCCHhHhh---cCCChhcccCCCCCCCCeEEe----CCCC----HHHHHHHhC-----CCCEEEE
Confidence 356 8999999988775433321 112 355566 3332 688998884 2578999
Q ss_pred EEeccCCCCcccc----cHHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEE
Q 012991 195 IIDHITSMPCVVI----PVRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFL 264 (452)
Q Consensus 195 ~~~~~~n~tG~~~----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l 264 (452)
+++..++++|.+. ++++|.++|++||+ ++|+|++|+ +|... .+.....+|++ |++|+++++ ..+|++
T Consensus 228 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~gi-llI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G~v 304 (439)
T 2oat_A 228 MVEPIQGEAGVVVPDPGYLMGVRELCTRHQV-LFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVSAV 304 (439)
T ss_dssp EECSSBTTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEE
T ss_pred EEECCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccCCCCCeEEE
Confidence 9988888899876 69999999999999 899999995 32211 12223357877 556987664 347999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. + .+.. .+ . +.+.+.....+..++++.+.+ +.+.++++++.+++.+.|.++ ++
T Consensus 305 ~~~~~~~~~-l-~~~~---~~------~--t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~l-~~ 365 (439)
T 2oat_A 305 LCDDDIMLT-I-KPGE---HG------S--TYGGNPLGCRVAIAALEVLEE-----ENLAENADKLGIILRNELMKL-PS 365 (439)
T ss_dssp EECHHHHTT-S-CTTS---SC------C--SSTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHTTS-CT
T ss_pred EECHHHHhc-c-CCCC---cc------c--CCCcCHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHh-cC
Confidence 999887765 2 2110 00 0 012233344444456665553 246778889999999999876 44
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+.......+.++++.+++. .+.+..++.+.|.++ ||.+... .++++|++++..+
T Consensus 366 ~~~~~~~~~g~~~~v~l~~~----~~~~~~~l~~~l~~~-Gv~v~~~--------------------~~~~iRi~~~~~~ 420 (439)
T 2oat_A 366 DVVTAVRGKGLLNAIVIKET----KDWDAWKVCLRLRDN-GLLAKPT--------------------HGDIIRFAPPLVI 420 (439)
T ss_dssp TTEEEEEEETTEEEEEECCC----SSCCHHHHHHHHHHT-TEECCBS--------------------SSSEEEECCCTTC
T ss_pred CCcEEEEeeeeEEEEEEecC----ccHHHHHHHHHHHHC-CeEEecC--------------------CCCEEEEECccCC
Confidence 33222223467888887621 013467899999775 9998531 1468999998888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
|++|+++++++|++++++
T Consensus 421 t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 421 KEDELRESIEIINKTILS 438 (439)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998753
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=210.67 Aligned_cols=326 Identities=13% Similarity=0.072 Sum_probs=215.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.+..++.+.+++.+.+......+ . ....+...+++++++++++. +++++|+|||+|+.+++.++...+.. .-
T Consensus 53 lg~~~p~v~~a~~~~~~~~~~~~-~---~~~~~~~~~l~~~la~~~~~---~~v~~~~gg~~a~~~al~~~~~~~~~-~~ 124 (406)
T 4adb_A 53 LGHAHPELREALNEQASKFWHTG-N---GYTNEPVLRLAKKLIDATFA---DRVFFCNSGAEANEAALKLARKFAHD-RY 124 (406)
T ss_dssp TCBTCHHHHHHHHHHHTTCSCCC-T---TSCCHHHHHHHHHHHHHSSC---SEEEEESSHHHHHHHHHHHHHHHHHH-HT
T ss_pred cCCCCHHHHHHHHHHHHhccccc-C---CcCCHHHHHHHHHHHhhCCC---CeEEEeCcHHHHHHHHHHHHHHHHHh-cC
Confidence 34557779999988765421111 1 11345678999999999987 49999999999999999876310000 00
Q ss_pred CCC-CEEEEeCCcchhHHHHHHHHHHhc---------CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 128 HRN-DTVLMLHCAFQAVKKSIQAYVTRA---------GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 128 ~~g-~~Vl~~~~~~~s~~~~~~~~a~~~---------g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
.+| ++|++.++.|++.......+.... +..+..+ +..+ +++|++++ .+++++|+++
T Consensus 125 ~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l------~~~~~~v~~~ 190 (406)
T 4adb_A 125 GSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHA----AYND----INSASALI------DDSTCAVIVE 190 (406)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEE----CTTC----HHHHHTTC------STTEEEEEEC
T ss_pred CCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEe----CCCc----HHHHHHHh------cCCeEEEEEe
Confidence 144 899999999988755543321100 1244455 2222 78888888 5789999999
Q ss_pred ccCCCCcccc-----cHHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 198 HITSMPCVVI-----PVRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 198 ~~~n~tG~~~-----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
|+|++|.++ ++++|.++|++||+ ++|+|++|+ ++.. ..+.....+|++++ +|+++++..+|+++++
T Consensus 191 -p~np~g~~~~~~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~~ 266 (406)
T 4adb_A 191 -PIQGEGGVVPASNAFLQGLRELCNRHNA-LLIFDEVQTGVGRTGELYAYMHYGVTPDLLTT--AKALGGGFPVGALLAT 266 (406)
T ss_dssp -SEETTTTSEECCHHHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEEC
T ss_pred -CCcCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCccchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEEEc
Confidence 889998765 58899999999999 899999996 3221 11222335687754 8986643348999999
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCc
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSL 346 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~ 346 (452)
+++++. + .+.. .+ ...+.+...+.+..++++.+. .+.+.++++++++++.+.|.++.. +..
T Consensus 267 ~~~~~~-~-~~~~---~~--------~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 328 (406)
T 4adb_A 267 EECARV-M-TVGT---HG--------TTYGGNPLASAVAGKVLELIN-----TPEMLNGVKQRHDWFVERLNTINHRYGL 328 (406)
T ss_dssp HHHHHT-C-CTTS---SC--------CSSTTCHHHHHHHHHHHHHHS-----SHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhh-h-ccCC---cC--------CCCCCCHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888765 2 2210 00 011233333333444444332 267788889999999999987632 112
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.......+.++++.++.. ...+..++.+.|.++ ||.+..+ .++++|++++..+|+
T Consensus 329 ~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~l~~~-gi~v~~~--------------------~~~~iRi~~~~~~~~ 383 (406)
T 4adb_A 329 FSEVRGLGLLIGCVLNAD----YAGQAKQISQEAAKA-GVMVLIA--------------------GGNVVRFAPALNVSE 383 (406)
T ss_dssp EEEEEEETTEEEEEECTT----TTTCHHHHHHHHHHT-TEECEES--------------------STTEEEECCCTTCCH
T ss_pred ceEEEEEEEEEEEEEeCC----cHHHHHHHHHHHHHC-CcEEeec--------------------CCCeEEEECCCCCCH
Confidence 111222367888888621 012567899999775 9998642 146999999888999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+|+++++++|++++++
T Consensus 384 e~i~~~~~~l~~~l~~ 399 (406)
T 4adb_A 384 EEVTTGLDRFAAACEH 399 (406)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999865
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-24 Score=212.11 Aligned_cols=380 Identities=13% Similarity=0.088 Sum_probs=227.5
Q ss_pred cccccCCCCCCCCCHHHHHhhhcc-------CCCCeEEeccCCC---CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHH
Q 012991 12 HHVSKKPKLTRCISEAEIRDEFSH-------HQHGVARINNGSF---GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKG 81 (452)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ir~~~~~-------~~~~~~~l~~~~~---~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~ 81 (452)
+++.+.-.++.++.+....+.... +..+..|+|..+. .+.++.+.+++.. .... +.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~~--------~~~~--y~~~~~ 76 (456)
T 2ez2_A 7 PFRIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMM--------GDEA--YAGSEN 76 (456)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHTTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHTT--------CCCC--SSSCHH
T ss_pred CeeeeeecccCCCCHHHHHHHHHHCCCCcccCCcccceeeeccccCCccCCHHHHHHhhc--------chhh--cccChh
Confidence 455666666667666554333322 2233445554332 2445666666651 1111 234566
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcc-hhHHHHHHHHHHhcCcEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAF-QAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~-~s~~~~~~~~a~~~g~~v~~ 160 (452)
..+++++++++++.+ ++++|+|||+|+.+++.++ +++|| +++.++| .++...+ ...|.+++.
T Consensus 77 ~~~l~~~la~~~~~~---~~~~~~~gt~a~~~al~~l--------~~~gd--i~~~~~~~~~~~~~~----~~~G~~~~~ 139 (456)
T 2ez2_A 77 FYHLERTVQELFGFK---HIVPTHQGRGAENLLSQLA--------IKPGQ--YVAGNMYFTTTRYHQ----EKNGAVFVD 139 (456)
T ss_dssp HHHHHHHHHHHHCCS---EEEEESSHHHHHHHHHHHH--------CCTTC--EEEESSCCHHHHHHH----HHTTCEEEE
T ss_pred HHHHHHHHHHHhCCC---cEEEeCCcHHHHHHHHHHh--------CCCCC--EeccccccchhHHHH----HHcCCEEEE
Confidence 889999999999884 8999999999999999887 47888 7788888 5544443 456999998
Q ss_pred EeCCCC--CCC----hHHH-HHHHHHHHhccccCCCceEEEEEeccCC-CCccccc---HHHHHHHHHHcCCCEEEEecc
Q 012991 161 VQLPFP--LAS----EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITS-MPCVVIP---VRKLVKICRDEGVDQVFVDAA 229 (452)
Q Consensus 161 ~~~~~~--~~~----~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n-~tG~~~~---l~~i~~l~~~~~~~~~ivD~a 229 (452)
+++... .+. .+.+ +++|++++++.. ..++++|++++++| ++|.+.| +++|+++|++||+ ++|+|++
T Consensus 140 v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i-~li~De~ 216 (456)
T 2ez2_A 140 IVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGI-KVFYDAT 216 (456)
T ss_dssp CBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTC-CEEEECT
T ss_pred ecccccccccccccccCCCCHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCC-eEEEEcc
Confidence 865310 001 1233 899999886321 13459999999998 9999887 8899999999999 6999999
Q ss_pred cccC---------Ccccccc--------ccCccEEEEcCcccCcCCCCcEEEEE-ecCccccCCCCCceeccCCCCcccc
Q 012991 230 HAMG---------SIKIDVK--------EIGADFYVSNLHKWFFCPPSVAFLYC-RKSILSSDMHHPVVSHEFGNGLPIE 291 (452)
Q Consensus 230 ~~~g---------~~~~~~~--------~~~~d~~~~s~~K~l~g~~G~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 291 (452)
|+.| ....+.. ...+|++++|++|+ +++...|+++. ++++++. + ........+..
T Consensus 217 ~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~-~~~~~gG~~~~~~~~~~~~-~-~~~~~~~~~~~---- 289 (456)
T 2ez2_A 217 RCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD-CLVNIGGFLCMNDDEMFSS-A-KELVVVYEGMP---- 289 (456)
T ss_dssp THHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTT-TCCSSCEEEEESCHHHHHH-H-HHHHHHHTCCT----
T ss_pred ccccccccccccccccCCcchhhhhhhhcccCCEEEEeCccc-CCCCceeEEEECCHHHHHH-H-HHHHhhccCcc----
Confidence 9875 1111111 12368888889996 44332588888 4555543 1 11100000100
Q ss_pred cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCc-cccC-C
Q 012991 292 SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSR-LRVM-G 369 (452)
Q Consensus 292 ~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 369 (452)
.+ +..+...+.+ .++.....+ . +.+.++..++.+++.+.|.+. ++.+..|.. +.++++.++.. .+.. .
T Consensus 290 -~~-~~~~~~~~~a--~a~~~~~~~--~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~--~~~~~~~~~~~~~~~~~~ 359 (456)
T 2ez2_A 290 -SY-GGLAGRDMEA--MAIGLREAM--Q-YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVG--GHAVFLDARRFCEHLTQD 359 (456)
T ss_dssp -TT-TTCCHHHHHH--HHHHHHHHT--C-HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCC--SSEEEEEHHHHTTTSCGG
T ss_pred -cc-cCcchhHHHH--HHHHHHHHh--H-HHHHHHHHHHHHHHHHHHhcC-CCccccCCC--ceEEEEEhHHhcCCCChh
Confidence 00 1111112211 133333322 2 456677778888999999885 777665543 66777765210 0000 1
Q ss_pred hhhHHHHHHHHhhhcceEe-eecccCCCCCCCCCCCCCCCC-CCccceEEeccccc-CCHHHHHHHHHHHHHHHhcc
Q 012991 370 EDDALRLRGHLRVRFGVEV-PIHYQAPKDDGQPQAGARDKD-GIITGYARISHQVY-NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 370 ~~~~~~l~~~L~~~~gI~v-~~~~~~~~~~~~~~~~~~~~~-~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~~ 443 (452)
......+.+.|.+++||.+ +.+..+.+.. ...... ....+++|++++.. ++++|+++++++|+++++..
T Consensus 360 ~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~-----~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 360 EFPAQSLAASIYVETGVRSMERGIISAGRN-----NVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp GCHHHHHHHHHHHHHSEECEEESHHHHCBC-----TTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred hccHHHHHHHHHHhcCeeeecccccccccC-----ccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 1113445777743459985 3232110000 000000 11246899999876 79999999999999998753
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=214.50 Aligned_cols=334 Identities=10% Similarity=0.041 Sum_probs=214.1
Q ss_pred CCCeEEeccCC------CCCCcHHHHHHHHH-HHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCC--cEE
Q 012991 37 QHGVARINNGS------FGSCPKSVLADQQK-WQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVG--EIS 102 (452)
Q Consensus 37 ~~~~~~l~~~~------~~~~p~~v~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~--~i~ 102 (452)
.++++.|..|. ..+.++.+.+++.+ .+... .. ..|....+..++++.++++++.. +++ +|+
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~---~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~ 99 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH---GA--SLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATI 99 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCC---CC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCcc---cc--ccCCCCCchHHHHHHHHHHHhcCCcccccccceEEE
Confidence 35678887772 23444789999988 65321 11 12223345677888888887541 256 899
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
+|+|+|+|+.+++..+. .+++||+|+++.|+|++....+ +..|.+++.++... ++.+.+ ++++++.+
T Consensus 100 ~t~g~~~a~~~~~~~~~------~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l 167 (397)
T 3fsl_A 100 QTLGGSGALKVGADFLK------RYFPESGVWVSDPTWENHVAIF----AGAGFEVSTYPWYD--EATNGVRFNDLLATL 167 (397)
T ss_dssp EESHHHHHHHHHHHHHH------HHCTTCCEEEESSCCHHHHHHH----HHTTCCEEEECCEE--TTTTEECHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHH------hcCCCCeEEEeCCCchhHHHHH----HHcCCceEEEeeee--ccCCcCcHHHHHHHH
Confidence 99999999999954321 2478999999999999875554 44699999995410 122333 89999999
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCcc-----cc---c-cccCccEEEE
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSIK-----ID---V-KEIGADFYVS 249 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~~-----~~---~-~~~~~d~~~~ 249 (452)
++. .++++++++++++||||.+++.+ +|+++|+++|+ ++|+|++++..... .. + ...+.++++.
T Consensus 168 ~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 243 (397)
T 3fsl_A 168 KTL---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAREL-IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSN 243 (397)
T ss_dssp TTC---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEE
T ss_pred HhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCE-EEEEecCchhhccCcccccHHHHHHHhcCCCEEEEe
Confidence 642 36789999999999999997754 88999999999 89999998754432 11 1 1224567888
Q ss_pred cCcccCcCCCC--cEEEEEe---cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---HhhcCHH
Q 012991 250 NLHKWFFCPPS--VAFLYCR---KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---RFEGGID 321 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~~~~g~~ 321 (452)
|++|. +|++| +|++++. ++.+.. +.... .. ......++++...+.++..++.... .+....+
T Consensus 244 S~SK~-~~~~G~riG~~~~~~~~~~~~~~-~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 313 (397)
T 3fsl_A 244 SFSKI-FSLYGERVGGLSVMCEDAEAAGR-VLGQL-KA-------TVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVE 313 (397)
T ss_dssp ECTTT-TTCGGGCCEEEEEECSSHHHHHH-HHHHH-HH-------HHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred ccccc-ccCcCCCeeEEEEecCCHHHHHH-HHHHH-HH-------HHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99996 67666 7888753 233322 00000 00 0000012233333333333332110 0011467
Q ss_pred HHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD 398 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~ 398 (452)
.++++++++++++.+.|.+++ ++.+..+.. +.++++.+ +...+.+.|.+ +||.+..
T Consensus 314 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~l~~-~gi~v~~-------- 372 (397)
T 3fsl_A 314 EMRTRILAMRQELVKVLSTEMPERNFDYLLNQR--GMFSYTGL----------SAAQVDRLREE-FGVYLIA-------- 372 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCC--SSEEECCC----------CHHHHHHHHHT-TCEECCT--------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceeecCCc--eEEEecCC----------CHHHHHHHHHh-CCEEECC--------
Confidence 788889999999999999885 555443332 55666444 33456666654 6999841
Q ss_pred CCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 399 GQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 399 ~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.+ |++++.. +.++|++++++|+++
T Consensus 373 --------------g~--Ris~~~~-~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 373 --------------SG--RMCVAGL-NTANVQRVAKAFAAV 396 (397)
T ss_dssp --------------TC--EEEGGGC-CTTTHHHHHHHHHHH
T ss_pred --------------CC--eEEEEec-CHhhHHHHHHHHHhh
Confidence 12 9998754 557799999999875
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=221.47 Aligned_cols=359 Identities=12% Similarity=0.077 Sum_probs=222.0
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CC--CCCcEEEecChhHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--AD--DVGEISLVDNATTAA 111 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~--~~~~i~~t~g~t~a~ 111 (452)
++.|+.+.++..|+.+++++.+..... .++ ....+..++++.+++++ + .+ ++++|++|+|+|+|+
T Consensus 105 ~i~l~~g~~~~~~~~~v~a~~~~~~~~-----~y~--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 105 AVNYCHTELGLNRDKVVAEWVNGAVAN-----NYP--VPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTC-----SCC--SSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred heeccCCCCCcCCcHHHHHHHHHHHhC-----CCC--CCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 577777777766666776665554321 111 11122345555555554 2 22 136999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++.... .+++||+|+++.|+|.+....+ ...|.+++.+++..+.++.+.+ +++|++++ .++
T Consensus 178 ~~~~~~l~~~~---l~~~gd~Viv~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l------~~~ 244 (533)
T 3f6t_A 178 VYAFHSLAENH---LLKKGDKIAINEPIFTPYLRIP----ELKDYELVEVDLHSYEKNDWEIEPNEIEKLK------DPS 244 (533)
T ss_dssp HHHHHHHHHTT---SSCTTCEEEEESSCCHHHHTSG----GGGGSEEEEECCCEETTTTSEECHHHHHHHS------CTT
T ss_pred HHHHHHhhhhh---ccCCcCEEEEcCCCcHHHHHHH----HHcCCeEEEEEecCCcccCCCCCHHHHHHHh------CCC
Confidence 99999732110 2589999999999999875554 3458899988653111222334 89999988 578
Q ss_pred eEEEEEeccCCCCcccccHH---HHHHHHH-HcCCCEEEEecccccCCcc-cccc--ccCccEEEEcCcccCcCCCC--c
Q 012991 191 IRLAIIDHITSMPCVVIPVR---KLVKICR-DEGVDQVFVDAAHAMGSIK-IDVK--EIGADFYVSNLHKWFFCPPS--V 261 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~---~i~~l~~-~~~~~~~ivD~a~~~g~~~-~~~~--~~~~d~~~~s~~K~l~g~~G--~ 261 (452)
+++|++++++||||.++|.+ +|+++|+ +||+ ++|+|++|+..... ..+. ..+.++++.|+||. +|++| +
T Consensus 245 ~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~Ri 322 (533)
T 3f6t_A 245 IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKL-MIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKL-FGCTGWRL 322 (533)
T ss_dssp EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTC-EEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHH-HTCGGGCE
T ss_pred CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCC-EEEEcCCccccccCccCHhhcCCCCEEEEecCccc-CCCcccce
Confidence 99999999999999999876 7788888 6899 89999998743221 1111 11356899999995 77777 8
Q ss_pred EEEEEecC-----ccccCCCCCce----eccCC--CC---------------cccccccccccCccccccHHH-HHHHHH
Q 012991 262 AFLYCRKS-----ILSSDMHHPVV----SHEFG--NG---------------LPIESAWIGTRDYSAQLVIPS-AVTFVS 314 (452)
Q Consensus 262 G~l~~~~~-----~~~~~l~~~~~----~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~-al~~~~ 314 (452)
|+++++++ ++.. + .+.. ...|+ .. .........+.+...+.++.. ++..+.
T Consensus 323 G~l~~~~~~~~~~li~~-l-~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 323 GVIALNEKNVFDDNIAH-L-DKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp EEEEEESSCHHHHHHHT-S-CHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred EEEEECcHHHHHHHHHh-c-chhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 99999887 4332 1 0000 00000 00 000111112333333333211 233332
Q ss_pred ------HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCC----------hhhHHHHHH
Q 012991 315 ------RFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMG----------EDDALRLRG 378 (452)
Q Consensus 315 ------~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~ 378 (452)
......+.++++++++++.+.+.|. + ++.+..+.. +.++++.++....... ..+..++..
T Consensus 401 ~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~--g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~ 476 (533)
T 3f6t_A 401 TSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTNT--HYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLL 476 (533)
T ss_dssp TCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTBC--CSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCCc--eEEEEEehHhhhhhccchHHHHHhhccCCHHHHHH
Confidence 1111356778888888888988886 3 555544443 6677777641100000 123446666
Q ss_pred HHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 379 HLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 379 ~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.|.+++||.+.++..+. ...+++|+|++. .+++++++++++|++++++
T Consensus 477 ~ll~~~GV~v~pg~~f~---------------~~~~~iRls~a~-~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 477 KLAEKNGVVLVDGVGFG---------------AKPGELRVSQAN-LPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp HHHHHTTSSSCTTEEEC---------------SSTTEEEEESSS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEeCCcccC---------------CCCCEEEEEEee-CCHHHHHHHHHHHHHHHHH
Confidence 66556799997766552 235799999965 4788999999999998865
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-25 Score=219.80 Aligned_cols=349 Identities=15% Similarity=0.094 Sum_probs=220.3
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCchh-h-hhhhhHHHHHHH-HHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDDF-Y-FNSLRKGILESR-AAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~~-~-~~~~~~~~~~~~-~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
..+.|.. +..+.|+.|.+++.+.+.... +++... + +.......+++. +++++++|++ ...++++||++|+..
T Consensus 46 ~~i~l~~-~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~~~v~~~sGs~a~~~ 122 (447)
T 3h7f_A 46 DTLEMIA-SENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--FANVQPHSGAQANAA 122 (447)
T ss_dssp HSEECCT-TCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHH
T ss_pred CceeEec-CCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--ceEEEeCCHHHHHHH
Confidence 4566643 445668889999987654211 111111 1 111122234444 9999999996 333438889999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHH-HHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVK-KSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~-~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
++.++ +++||+|++++++|.++. ..........+..+..++++ . +++.+ ++++++++++ .++
T Consensus 123 a~~~~--------~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~-~~~~~d~~~l~~~i~~-----~~~ 186 (447)
T 3h7f_A 123 VLHAL--------MSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD--P-ATHLIDMDAVRATALE-----FRP 186 (447)
T ss_dssp HHHHH--------CCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC--T-TTCSCCHHHHHHHHHH-----HCC
T ss_pred HHHHh--------cCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcC--c-ccCCcCHHHHHHHHHh-----cCC
Confidence 99877 589999999999987721 11110011124556666431 1 22334 8999998853 467
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc----ccccccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
++|++++++|+++. ++++|.++|++||+ ++|+|++|+.|... .+.. .++|+++.|+||++.||.| |+++.+
T Consensus 187 ~~i~~~~~~~~~~~--~l~~i~~l~~~~g~-lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~ 261 (447)
T 3h7f_A 187 KVIIAGWSAYPRVL--DFAAFRSIADEVGA-KLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGK 261 (447)
T ss_dssp SEEEEECSSCCSCC--CHHHHHHHHHHHTC-EEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEEC
T ss_pred eEEEEcCCCCCCcc--CHHHHHHHHHHcCC-EEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEEC
Confidence 89999888888766 99999999999999 89999998765321 1111 2579999999999888887 999988
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH----cC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA----WG 343 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~~ 343 (452)
+++.+. + .... .+ ...++++...+.++.+++..... .+++.+.+++.++++++.+.|.+. +|
T Consensus 262 ~~~~~~-l-~~~~---~~-------~~~~~~~~~~~~a~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g 327 (447)
T 3h7f_A 262 QQYAKA-I-NSAV---FP-------GQQGGPLMHVIAGKAVALKIAAT--PEFADRQRRTLSGARIIADRLMAPDVAKAG 327 (447)
T ss_dssp GGGHHH-H-HHHH---TT-------TTCSSCCHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred HHHHHH-H-hhhc---CC-------cccCCccHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 877654 1 1110 00 01134444344555555544332 146778888899999999998765 46
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCC-CCCCCCCCCCCCCCCccceEEecccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK-DDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
+++..+. ...+++++.+.. .+.+...+.+.|.+ .||.+.....+.. .+ ...++++|+++..
T Consensus 328 ~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~l~~-~GI~v~~~~i~~~~~~-----------p~~~~~lRig~~~ 389 (447)
T 3h7f_A 328 VSVVSGG-TDVHLVLVDLRD-----SPLDGQAAEDLLHE-VGITVNRNAVPNDPRP-----------PMVTSGLRIGTPA 389 (447)
T ss_dssp CEEGGGS-CSSSEEEEECTT-----SSCCHHHHHHHHHH-TTEECBC------------------------CEEEEECHH
T ss_pred eEEecCC-CCCCEEEEEcCC-----CCCCHHHHHHHHHH-CCeEEecccCCCCCCC-----------CCCCCceeccCHH
Confidence 6654322 125577776641 23456667777754 5999862211110 00 1335679999865
Q ss_pred c----CCHHHHHHHHHHHHHHHhcc
Q 012991 423 Y----NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 423 ~----~t~~di~~l~~~l~~~~~~~ 443 (452)
. .+++|+++++++|++++...
T Consensus 390 ~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 390 LATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred HhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 4 46899999999999998764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=214.80 Aligned_cols=353 Identities=13% Similarity=0.050 Sum_probs=217.0
Q ss_pred CCCCHHHHHhhhccCCC-CeEEeccCCC-C-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-
Q 012991 22 RCISEAEIRDEFSHHQH-GVARINNGSF-G-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI- 93 (452)
Q Consensus 22 ~~~~~~~ir~~~~~~~~-~~~~l~~~~~-~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~- 93 (452)
++..+-.+.+.|...+. .++.|..+.+ . +..+.+.+++..... ..+.....|....+..++++.+++++
T Consensus 32 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~---~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 108 (448)
T 3meb_A 32 PPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISS---DLSKYNKEYPPVAGFPLFLEAAQFLMF 108 (448)
T ss_dssp CCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHH---CTTTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhh---cccCCCCCCCCCcchHHHHHHHHHHhc
Confidence 34445555666654433 3678776665 2 333445555444331 01111122333455788999999987
Q ss_pred CCCC----CCcEEE--ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC
Q 012991 94 NADD----VGEISL--VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL 167 (452)
Q Consensus 94 ~~~~----~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~ 167 (452)
|.+. +++|++ |+|||+|+.+++..+. .+.+||+|++++|+|.++...+..+.+..|.+++.++..
T Consensus 109 g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~------~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~--- 179 (448)
T 3meb_A 109 GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLH------LWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYL--- 179 (448)
T ss_dssp CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHH------HHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCB---
T ss_pred CCCccccCcCcEEEEECCcHHHHHHHHHHHHH------HhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecc---
Confidence 7641 479999 9999999988543221 247899999999999987666542112679999999542
Q ss_pred CCh--HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCc-cc--c
Q 012991 168 ASE--EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSI-KI--D 238 (452)
Q Consensus 168 ~~~--~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~-~~--~ 238 (452)
+.+ +.+ ++++++.+++. .++++++++++++||||..++.+ +|+++|+++|+ ++|+|++++.... +. +
T Consensus 180 ~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~-~li~Deay~~~~~~~~~~~ 255 (448)
T 3meb_A 180 RKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKH-IAFFDSAYQGFATGSFEAD 255 (448)
T ss_dssp CTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTTSSSCHHHH
T ss_pred ccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCC-EEEEecccccccCCCcccC
Confidence 222 334 89999998642 24688999999999999998855 58999999999 8999999764322 11 1
Q ss_pred ---cc----ccCccEEEEcCcccCcCCCC--cEEE--EE--------e-c----CccccCCCCCceeccCCCCccccccc
Q 012991 239 ---VK----EIGADFYVSNLHKWFFCPPS--VAFL--YC--------R-K----SILSSDMHHPVVSHEFGNGLPIESAW 294 (452)
Q Consensus 239 ---~~----~~~~d~~~~s~~K~l~g~~G--~G~l--~~--------~-~----~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (452)
+. .....+++.|+||. +|++| +|++ ++ . + +++.. + ... ....
T Consensus 256 ~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~-l-~~~-----------~~~~ 321 (448)
T 3meb_A 256 AFAVRMFVDAGVEVLVAQSFSKN-FGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSG-M-TLQ-----------IRKT 321 (448)
T ss_dssp THHHHHHHHTTCCEEEEEECTTT-SCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHH-H-HHH-----------HHTT
T ss_pred chhHHHHhhcCCcEEEEeccccc-CCCccccceeeeeeeccccccccCCHHHHHHHHHH-H-HHH-----------Hhcc
Confidence 11 11234678899995 77777 7887 55 3 2 23322 0 000 0001
Q ss_pred ccccCccccccHHHHHHHH---HHhhcCHHHHHHHHHHHHHHHHHHHHHH--cC------CCcCCCcccccceEEEEcCC
Q 012991 295 IGTRDYSAQLVIPSAVTFV---SRFEGGIDGIMQRNHEQALKMARMLANA--WG------TSLGSPPEICAAMVMVGLPS 363 (452)
Q Consensus 295 ~~~~~~~~~~~~~~al~~~---~~~~~g~~~~~~~~~~~~~~l~~~L~~~--~~------~~~~~~~~~~~~~~~~~~~~ 363 (452)
..+++...+.++..++... ..+...++.++++++++++++.+.|.++ ++ +....+.. +.+.+..+
T Consensus 322 ~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~-- 397 (448)
T 3meb_A 322 WSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAI--GMFTFTGL-- 397 (448)
T ss_dssp TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCC--SSEEECCC--
T ss_pred cCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCc--eEEEecCC--
Confidence 1223333333333333211 0111136778888999999999999886 33 33222222 44555333
Q ss_pred ccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+. ++...|.+++||++.++ ..|||++.. +.++|++++++|+++++
T Consensus 398 --------~~-~~~~~ll~~~gV~v~~G-----------------------~gRis~a~~-~~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 398 --------TP-EHVDYLKEKWSIYLVKA-----------------------GGRMSMCGL-TESNCDYVAEAIHDAVT 442 (448)
T ss_dssp --------CH-HHHHHHHHHHCEEECSG-----------------------GGEEEGGGC-CTTTHHHHHHHHHHHHH
T ss_pred --------CH-HHHHHHHHhCCEEEeCC-----------------------CcEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 33 44555545569998421 139999754 55669999999999986
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=218.60 Aligned_cols=387 Identities=13% Similarity=0.091 Sum_probs=223.6
Q ss_pred ccccCCCCCCCCCHHHHHhhhccC-------CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Q 012991 13 HVSKKPKLTRCISEAEIRDEFSHH-------QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILES 85 (452)
Q Consensus 13 ~~~~~~~~~~~~~~~~ir~~~~~~-------~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (452)
++.+.-.++.++.+....+..... ..+..|+|..+.... +.+.+++.+.+.. +... +.......++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ylD~~~~~~~-~~v~~a~~~~~~~----~~~~--y~~~~~~~~l 81 (467)
T 1ax4_A 9 FRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGT-NAMSDHQWAAMIT----GDEA--YAGSRNYYDL 81 (467)
T ss_dssp EEEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCSSSC-CCEEHHHHHHHHT----CCCC--SSSCHHHHHH
T ss_pred hhhceeecccccchhHHHHHHHhcCcCcccCCCCceeeecccCcCC-HHHHHHHHHHHhh----cccc--cccCccHHHH
Confidence 444444555666665544433322 233445554333333 3466666655431 1111 2234567889
Q ss_pred HHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCE---EEEeCCcchhHHHHHHHHHHhcCcEEEEEe
Q 012991 86 RAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDT---VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQ 162 (452)
Q Consensus 86 ~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~---Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~ 162 (452)
+++++++++. +++++|+|||+|+.+++.++.... ..+||+ |+++.+.|.+....+ ...|.+++.++
T Consensus 82 ~~~la~~~~~---~~v~~t~ggt~A~~~al~~~~~~~----~~~Gd~~~~viv~~~~~~~~~~~~----~~~g~~~~~~~ 150 (467)
T 1ax4_A 82 KDKAKELFNY---DYIIPAHQGRGAENILFPVLLKYK----QKEGKAKNPVFISNFHFDTTAAHV----ELNGCKAINIV 150 (467)
T ss_dssp HHHHHHHHCC---CEEEEESSHHHHHHHHHHHHHHHH----HHTTCCSSCEEEESSCCHHHHHHH----HHTTCEEEECB
T ss_pred HHHHHHHcCC---CcEEEcCCcHHHHHHHHHHHHHhh----ccCCCccceEEEeccccchhhHHH----hccCCceeccc
Confidence 9999999987 589999999999999999873100 017888 888833334433333 44588887664
Q ss_pred CCC--CCC----ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-ccccc---HHHHHHHHHHcCCCEEEEecccc
Q 012991 163 LPF--PLA----SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIP---VRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 163 ~~~--~~~----~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
... +.+ ..+.+ +++|++++++.. .+++++|++++++|++ |.++| +++|+++|++||+ ++|+|++++
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi-~li~De~~~ 227 (467)
T 1ax4_A 151 TEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI-FVVMDSARF 227 (467)
T ss_dssp CGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC-CEEEECTTH
T ss_pred ccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCC-EEEEEchhh
Confidence 321 101 01234 899999996421 1379999999999999 88765 5789999999999 699999876
Q ss_pred c-----------CCccccccc------cCccEEEEcCcccCcCCCCcEEEEEe-c-CccccCCCCCceeccCCCCccccc
Q 012991 232 M-----------GSIKIDVKE------IGADFYVSNLHKWFFCPPSVAFLYCR-K-SILSSDMHHPVVSHEFGNGLPIES 292 (452)
Q Consensus 232 ~-----------g~~~~~~~~------~~~d~~~~s~~K~l~g~~G~G~l~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~ 292 (452)
. +..+.++.. ..+|++++|+||+++.+.| |+++.+ + ++++. + ...... ++. .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~-~-~~~~~~-~~~-~---- 298 (467)
T 1ax4_A 228 CENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTL-A-RQRCVP-MEG-F---- 298 (467)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHH-H-HHHHHH-HTC-S----
T ss_pred hhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHH-H-Hhhccc-ccc-c----
Confidence 5 222222211 2368999999997544435 677676 4 55543 1 111000 000 0
Q ss_pred ccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc-c-CCh
Q 012991 293 AWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR-V-MGE 370 (452)
Q Consensus 293 ~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 370 (452)
...+..+...+.++..+++... . +...++..++++++.+.|.+ .++.+..+.. +.++++.+..... . ..+
T Consensus 299 ~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 370 (467)
T 1ax4_A 299 VTYGGLAGRDMAAMVQGLEEGT----E-EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTG--GHAVFVDCKKLVPQIPGDQ 370 (467)
T ss_dssp TTTTTCCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCC--SSEEEEESTTTCTTSCGGG
T ss_pred cccCCccchHHHHHHHHHHHhh----h-hhHHHHHHHHHHHHHHHHHh-CCCCcccCCC--ceEEEEehhhhccccccCC
Confidence 0012222222222222332211 1 12333445777889999987 4777665543 6677777211000 0 013
Q ss_pred hhHHHHHHHH-hhhcceEeee-cccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHHHHhc
Q 012991 371 DDALRLRGHL-RVRFGVEVPI-HYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 371 ~~~~~l~~~L-~~~~gI~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~ 442 (452)
.+..++.+.| .+ .||.+.. +..+.+... .... + .....+++|++++.+ +|.+|+++++++|+++++.
T Consensus 371 ~~~~~l~~~L~~~-~gv~v~~~g~~~~~~~~--~~g~-~-~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 371 FPAQAVINALYLE-SGVRAVEIGSFLLGRDP--ATGE-Q-KHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp CHHHHHHHHHHHH-HCEECEEESHHHHCBCT--TTCS-B-CCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHh-cCceeeecCcccccccc--cccc-c-cccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 4567899988 55 5999865 322100000 0000 0 001237999999844 8999999999999998865
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-25 Score=215.38 Aligned_cols=334 Identities=12% Similarity=0.054 Sum_probs=213.4
Q ss_pred CCCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCCcEEE--
Q 012991 37 QHGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVGEISL-- 103 (452)
Q Consensus 37 ~~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~i~~-- 103 (452)
++.++.|..+.+ .+.++.+.+++.+.+... ....|.......+++++++++++.. ++++|++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-----~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 99 (396)
T 2q7w_A 25 RPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE-----TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQ 99 (396)
T ss_dssp ---CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC-----CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCceecccccccCCCCCccCcHHHHHHHHhhcCcc-----cccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEe
Confidence 356778877752 245677999988776431 1112333455788999999988321 1578988
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+||++|+.+++.++. .+.+||+|++++|+|++....+ +..|.+++.++... .+++.+ ++++++.++
T Consensus 100 ~~g~~~a~~~~~~~~~------~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~ 167 (396)
T 2q7w_A 100 TPGGTGALRVAADFLA------KNTSVKRVWVSNPSWPNHKSVF----NSAGLEVREYAYYD--AENHTLDFDALINSLN 167 (396)
T ss_dssp ESHHHHHHHHHHHHHH------HHSCCCEEEEEESCCTHHHHHH----HHTTCEEEEEECEE--TTTTEECHHHHHHHHT
T ss_pred cccchhhHHHHHHHHH------HhCCCCEEEEcCCCchhHHHHH----HHcCCceEEEeccc--CCCCCcCHHHHHHHHH
Confidence 9999999999987652 1368999999999999876554 44699999986521 122233 899999985
Q ss_pred ccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc-------ccc-cccc-CccEEEEc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI-------KID-VKEI-GADFYVSN 250 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~-------~~~-~~~~-~~d~~~~s 250 (452)
+. .++++++++++++||||.++|. ++|+++|++||+ ++|+|++++.... ++. +... +.++++.|
T Consensus 168 ~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 243 (396)
T 2q7w_A 168 EA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGW-LPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASS 243 (396)
T ss_dssp TC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEE
T ss_pred hC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEecccccccCCccchhHHHHHHHhcCCcEEEEEe
Confidence 32 2357889999999999999874 578999999999 8999999875332 111 1111 34578899
Q ss_pred CcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---HhhcCHHH
Q 012991 251 LHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---RFEGGIDG 322 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~~~~g~~~ 322 (452)
++|+ +|++| +|++++ +++.+.. +...... ......++++...+.++.++++... .+....+.
T Consensus 244 ~sK~-~~~~G~riG~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~ 313 (396)
T 2q7w_A 244 YSXN-FGLYNERVGACTLVAADSETVDR-AFSQMKA--------AIRANYSNPPAHGASVVATILSNDALRAIWEQELTD 313 (396)
T ss_dssp CTTT-TTCGGGCCEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cccc-ccccccccceEEEEcCCHHHHHH-HHHHHHH--------HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 9996 67677 699887 4432221 1000000 0000012223334444444443220 00114667
Q ss_pred HHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
++++++++++++.+.|.++. ++++..+.. +.++++.+ +...+.+.|.+ +||.+.
T Consensus 314 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~l~~-~gv~v~---------- 370 (396)
T 2q7w_A 314 MRQRIQRMRQLFVNTLQEKGANRDFSFIIKQN--GMFSFSGL----------TKEQVLRLREE-FGVYAV---------- 370 (396)
T ss_dssp C-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCC--SSEEECCC----------CHHHHHHHHHH-HCEECC----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcceecCCC--ceEEEecC----------CHHHHHHHHHh-cCeeec----------
Confidence 77888899999999998874 255443332 45555433 23456566644 599984
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
..+|++++.. +++++++++++|+++
T Consensus 371 --------------~~~Ris~~~~-~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 371 --------------ASGRVNVAGM-TPDNMAPLCEAIVAV 395 (396)
T ss_dssp --------------TTCEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred --------------CCceEEEeec-CHHHHHHHHHHHHhc
Confidence 1369999854 899999999999876
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=213.60 Aligned_cols=338 Identities=11% Similarity=0.035 Sum_probs=219.5
Q ss_pred CCCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCC----CCCcEEE--
Q 012991 37 QHGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NAD----DVGEISL-- 103 (452)
Q Consensus 37 ~~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~----~~~~i~~-- 103 (452)
+++++.|..+.+ .+.++.+.+++.+.... ......|.......++++++++++ +.. ++++|++
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 104 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhC----hhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEE
Confidence 567888888764 24557788888776521 111112333455688999999998 431 2589999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCC-----CEEEEeCCcchhHHHHHHHHHHhcCcE-EEEEeCCCCCCChHHH-HHH
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRN-----DTVLMLHCAFQAVKKSIQAYVTRAGGS-VVEVQLPFPLASEEEI-INE 176 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g-----~~Vl~~~~~~~s~~~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~-~~~ 176 (452)
|+||++|+.+++..+. .+.+| |+|+++.++|++....+ ...|.+ ++.++... ++.+.+ +++
T Consensus 105 t~gg~~a~~~~~~~~~------~~~~g~~~~~d~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~--~~~~~~d~~~ 172 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLA------RWYNGTNNKDTPVYVSSPTWENHNGVF----TTAGFKDIRSYRYWD--TEKRGLDLQG 172 (412)
T ss_dssp EEHHHHHHHHHHHHHH------HHSSSSSCCCSCEEEEESCCTHHHHHH----HHTTCSCEEEEECEE--TTTTEECHHH
T ss_pred CCCcHHHHHHHHHHHH------HhCcCcCCCCCeEEEcCCCcHHHHHHH----HHcCCceeEEEeeec--CCCCccCHHH
Confidence 9999999999965331 13678 99999999999875554 446888 88886521 122233 888
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc--------ccc-ccc-cC
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI--------KID-VKE-IG 243 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~--------~~~-~~~-~~ 243 (452)
+++.+++. ..++++|++++++||||.++|. ++|+++|++||+ ++|+|++++.... ++. +.. .+
T Consensus 173 l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 1ajs_A 173 FLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL-FPFFDSAYQGFASGNLEKDAWAIRYFVSEGF 248 (412)
T ss_dssp HHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred HHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEcccccccCCcccccchHHHHHhccCC
Confidence 99888642 3467889999999999999874 578999999999 8999999753221 111 111 12
Q ss_pred ccEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---H
Q 012991 244 ADFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---R 315 (452)
Q Consensus 244 ~d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~ 315 (452)
.++++.|+||. +|++| +|++++ +++.++. +...... ......+.++...+.++.++++... +
T Consensus 249 ~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 318 (412)
T 1ajs_A 249 ELFCAQSFSKN-FGLYNERVGNLTVVAKEPDSILR-VLSQMQK--------IVRVTWSNPPAQGARIVARTLSDPELFHE 318 (412)
T ss_dssp CEEEEEECTTT-SCCGGGCEEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCSHHHHHHHHHHHSHHHHHH
T ss_pred cEEEEEecccc-cCCCCcceEEEEEecCCHHHHHH-HHHHHHH--------HHhcccCCCChHHHHHHHHHHcCcchhHH
Confidence 34888999995 77777 799988 6653221 1000000 0000012234444555555555331 0
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecc
Q 012991 316 FEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHY 392 (452)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~ 392 (452)
+....+.++++++++++++.+.|.++. ++.+..+.. +.+++..+ +...+...|. ++||.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~l~-~~gv~v~--- 382 (412)
T 1ajs_A 319 WTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQI--GMFSFTGL----------NPKQVEYLIN-QKHIYLL--- 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCC--SSEEECCC----------CHHHHHHHHH-TTCEECC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCC--ceEEEeCC----------CHHHHHHHHH-hCCEEec---
Confidence 011467888899999999999998873 255443322 44555433 2334545554 4699984
Q ss_pred cCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 393 QAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+|++++. .+++++++++++|+++++.
T Consensus 383 ---------------------~~~Ris~~~-~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 383 ---------------------PSGRINMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp ---------------------TTSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred ---------------------CCcEEEeee-CCHHHHHHHHHHHHHHHHh
Confidence 136999984 4899999999999998754
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-23 Score=206.66 Aligned_cols=343 Identities=11% Similarity=0.065 Sum_probs=215.9
Q ss_pred CCCCcHHHH-H-HHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccccc-
Q 012991 48 FGSCPKSVL-A-DQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTE- 124 (452)
Q Consensus 48 ~~~~p~~v~-e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~- 124 (452)
.++.++.|. + ++.+++.......... .....+...++.+.++++++..+.++|+|++|||+|++.++..+. .+..
T Consensus 68 lG~~~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~-~~~~~ 145 (449)
T 2cjg_A 68 LGMNPPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAF-DWKSR 145 (449)
T ss_dssp SCBSCHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHH-HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHH-HHhcc
Confidence 455677799 8 9988332221111111 112345678899999999973236899999999999999998542 1110
Q ss_pred -----CC-CCCCCEEEEeCCcchhHHHHHHHHH-----HhcCc-----EEEEEeCCCCCCCh------HHH-HHHHHHHH
Q 012991 125 -----GR-FHRNDTVLMLHCAFQAVKKSIQAYV-----TRAGG-----SVVEVQLPFPLASE------EEI-INEFKKGI 181 (452)
Q Consensus 125 -----~~-~~~g~~Vl~~~~~~~s~~~~~~~~a-----~~~g~-----~v~~~~~~~~~~~~------~~~-~~~l~~~i 181 (452)
.. -.++++|++.++.|++....+..+. .+.+. .+..++.+.+..+. ... +++|++.+
T Consensus 146 ~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i 225 (449)
T 2cjg_A 146 HNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAF 225 (449)
T ss_dssp HHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHH
Confidence 00 0128899999999887544321110 01122 45555331100111 123 77789888
Q ss_pred hccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLH 252 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~ 252 (452)
++. ++++++|+++.++|++|...+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++++ +
T Consensus 226 ~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~--s 299 (449)
T 2cjg_A 226 ETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDA-LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAF--G 299 (449)
T ss_dssp HHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--C
T ss_pred Hhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCc-EEEEeccccCCCccCcceeecccCCCceEEEe--c
Confidence 642 367899999988899998766 8999999999999 899999998 43321 1222335787755 5
Q ss_pred ccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 253 KWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 253 K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
|++ + +|++++++++++. +....... +. .. .+.+.+...+.+..++++.+.+ +.+.++++++++
T Consensus 300 K~l--~--iG~~~~~~~~~~~-l~~~~~~~--~~---~~--~t~~~n~~~~~aa~aal~~~~~-----~~~~~~~~~~~~ 362 (449)
T 2cjg_A 300 KKT--Q--VCGVMAGRRVDEV-ADNVFAVP--SR---LN--STWGGNLTDMVRARRILEVIEA-----EGLFERAVQHGK 362 (449)
T ss_dssp GGG--S--SEEEEECGGGGGS-TTCTTTST--TS---SC--CSSSSCHHHHHHHHHHHHHHHH-----HTHHHHHHHHHH
T ss_pred Ccc--c--EEEEEECHHHhhh-hhhcccCC--cc---cc--cCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 986 3 7888898887764 21101000 00 00 1122334445555566666553 345778888999
Q ss_pred HHHHHHHHHc-CCCc-CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAW-GTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 333 ~l~~~L~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
++.+.|.++. ++.. .......+.++++.++ ...+..++.+.|.+ .||.+..+
T Consensus 363 ~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~l~~-~Gv~v~~~------------------- 416 (449)
T 2cjg_A 363 YLRARLDELAADFPAVVLDPRGRGLMCAFSLP------TTADRDELIRQLWQ-RAVIVLPA------------------- 416 (449)
T ss_dssp HHHHHHHHHHHHSTTTSEEEEEETTEEEEECS------SHHHHHHHHHHHHH-TTEECEEE-------------------
T ss_pred HHHHHHHHHHhhCCCceeeEeeccEEEEEEEC------ChHHHHHHHHHHHH-CCeEEecC-------------------
Confidence 9999998752 1221 1111223678888775 22346678998876 49998642
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+++|++++..+|++||++++++|+++++.
T Consensus 417 -g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 417 -GADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp -TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1369999999889999999999999998753
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-24 Score=211.88 Aligned_cols=354 Identities=12% Similarity=0.085 Sum_probs=220.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..++.++.+.+++.+.+.... .+. +.....+...++++.++++++.+ .+++++|+|||+|+..++.++.. +....
T Consensus 63 ~lG~~~~~v~~a~~~~~~~~~--~~~-~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggsea~~~al~~~~~-~~~~~ 137 (449)
T 3a8u_X 63 GAGHTRKEIQEAVAKQLSTLD--YSP-GFQYGHPLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMVRA-YWRLK 137 (449)
T ss_dssp TTCBSCHHHHHHHHHHTTTCS--CCC-SSSCCCHHHHHHHHHHHTTSSTT-EEEEEEESSHHHHHHHHHHHHHH-HHHHT
T ss_pred cCCCCCHHHHHHHHHHHHhCC--Ccc-ccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHHHH-HHHhc
Confidence 345557889999988765421 111 10223456788999999999874 68999999999999999987631 10000
Q ss_pred -CCCCCEEEEeCCcchhHHHHHHHHHH----hcC-----cEEEEEeCCCCC-------C--ChHHH-HHHHHHHHhcccc
Q 012991 127 -FHRNDTVLMLHCAFQAVKKSIQAYVT----RAG-----GSVVEVQLPFPL-------A--SEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 127 -~~~g~~Vl~~~~~~~s~~~~~~~~a~----~~g-----~~v~~~~~~~~~-------~--~~~~~-~~~l~~~i~~~~~ 186 (452)
-.++++|++.++.|++.......+.. +.+ ..+..++.+... + +.+.. +++|++++++..
T Consensus 138 g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~- 216 (449)
T 3a8u_X 138 GQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD- 216 (449)
T ss_dssp TCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC-
Confidence 02678999999998875443322110 000 124445432110 1 12333 788999886420
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCcc----ccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
.+++++|+++..++++|.+.| +++|.++|++||+ ++|+|++| ++|... .+.....+|++ |++|++.+
T Consensus 217 -~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~-~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~ 292 (449)
T 3a8u_X 217 -ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNI-LLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN 292 (449)
T ss_dssp -GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT
T ss_pred -CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCC-EEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC
Confidence 146788888887788999888 9999999999999 89999999 465331 12222346877 55598765
Q ss_pred C-CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 P-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+ ..+|++++++++++. +......... .. .....+.+.+...+.+..++++.+.+ +.+.++.+++.+++++
T Consensus 293 G~~~~G~~~~~~~~~~~-l~~~~~~~~~-~~--~~~~~t~~~~~~~~aa~~aal~~~~~-----~~~~~~~~~~~~~l~~ 363 (449)
T 3a8u_X 293 GAIPMGAVIASTEIYQT-FMNQPTPEYA-VE--FPHGYTYSAHPVACAAGLAALCLLQK-----ENLVQSVAEVAPHFEK 363 (449)
T ss_dssp TSSCCEEEEEEHHHHHH-HHTCSSCTTS-CS--SCCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECHHHHHH-hhccCccccc-cc--ccccCCCcccHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH
Confidence 2 228999998877664 2110000000 00 00001122333444455556666553 2467788899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++..+.........+.++++.++...... ..+..++.+.|.++ ||.+..+ ++++
T Consensus 364 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~-~~~~~~~~~~l~~~-Gv~v~~~---------------------g~~i 420 (449)
T 3a8u_X 364 ALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA-IVRPFEAGMALWKA-GFYVRFG---------------------GDTL 420 (449)
T ss_dssp HHHTTTTSTTEEEEEEETTEEEEEECCBTTBS-SHHHHHHHHHHHHH-TEECEEE---------------------TTEE
T ss_pred HHHHHhcCCCeEEEeeeEEEEEEEEecCcccc-cccHHHHHHHHHHC-CcEEecC---------------------CCEE
Confidence 99875334332211234678888886310000 00334688888775 9998632 1589
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++..+|++|+++++++|+++++.
T Consensus 421 Ris~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 421 QFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 99998888999999999999998864
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=207.30 Aligned_cols=339 Identities=13% Similarity=0.071 Sum_probs=214.7
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCC-CcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDV-GEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
+..++.+.+++.+.+... .. ..+.....+...+++++++++++.. . ++++||+||++|+..++.++. ..
T Consensus 58 G~~~p~v~~a~~~~~~~~-~~--~~~~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~ggsea~~~al~~~~------~~ 127 (439)
T 3dxv_A 58 GYGHPAIVAAVSAAAANP-AG--ATILSASNAPAVTLAERLLASFPGE-GTHKIWFGHSGSDANEAAYRAIV------KA 127 (439)
T ss_dssp CBSCHHHHHHHHHHHHSC-SC--SCSSSSEEHHHHHHHHHHHHTTTCT-TTEEEEEESSHHHHHHHHHHHHH------HH
T ss_pred CCCCHHHHHHHHHHHHhc-cC--ccccccCCHHHHHHHHHHHHhCCCC-CCCEEEEeCCHHHHHHHHHHHHH------HH
Confidence 346788999998887543 11 1112335667899999999999764 4 699999999999999998642 12
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcE--------------EEEEeCCCCC-CChHH-HHHHHHHHHhccccCCCce
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGS--------------VVEVQLPFPL-ASEEE-IINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~--------------v~~~~~~~~~-~~~~~-~~~~l~~~i~~~~~~~~~~ 191 (452)
.++++|++.++.|++.......+ .+.. +..++.+... +.... .+++|++++++. ..+++
T Consensus 128 ~~~~~vi~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~ 202 (439)
T 3dxv_A 128 TGRSGVIAFAGAYHGCTVGSMAF---SGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV--PAGSI 202 (439)
T ss_dssp HSCCEEEEETTCCCCSSHHHHCC----------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTS--CTTCE
T ss_pred hCCCEEEEECCCCCCCcHHHHhh---cCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhc--CCCCE
Confidence 45678888888887654443221 1111 1222211000 00011 378888888411 13578
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCC----ccccccccCccEEEEcCcccCcCCCCcE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGS----IKIDVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~----~~~~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+ ++. ...+.....+|++ |++|++.++..+|
T Consensus 203 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG 279 (439)
T 3dxv_A 203 GAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGI-LVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLS 279 (439)
T ss_dssp EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCE
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceE
Confidence 99999999999999998 9999999999999 899999996 221 1223333457777 5569866544479
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
++++++++++. + .+.. ... +. .+...+.+..++++.+.+ +.+.++++++.+++++.|.++.
T Consensus 280 ~~~~~~~~~~~-~-~~~~---------~~~--t~-~~~~~~~aa~aal~~~~~-----~~~~~~~~~~~~~~~~~l~~~~ 340 (439)
T 3dxv_A 280 AVIAPAEILDC-A-SAFA---------MQT--LH-GNPISAAAGLAVLETIDR-----DDLPAMAERKGRLLRDGLSELA 340 (439)
T ss_dssp EEEEEHHHHTS-C-SSSS---------CCT--TT-TCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHhh-h-cCCC---------cCC--Cc-ccHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHH
Confidence 99999888775 2 1110 000 01 222333333344444432 3456677778888888877652
Q ss_pred -CCCcCCCcccccceEEEEcCCc--cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 343 -GTSLGSPPEICAAMVMVGLPSR--LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
...........+.++++.+... ....+..+..++.+.|.++ ||.+..+.. .++++|++
T Consensus 341 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~------------------~~~~iRi~ 401 (439)
T 3dxv_A 341 KRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM------------------NGNVLEFT 401 (439)
T ss_dssp HHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST------------------TSCEEEEC
T ss_pred HhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC------------------CCCEEEEE
Confidence 1111111112366777765210 0001244567888888775 999865421 24799999
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
++...|++|+++++++|++++++-
T Consensus 402 ~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 402 PPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 998889999999999999998754
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=208.80 Aligned_cols=321 Identities=15% Similarity=0.138 Sum_probs=202.2
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 75 FNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
+....+..+++++++++++|.+ ..+++++|++|+..++.++ +++||+|+++.++|+++...+..++...
T Consensus 53 ~~~~~~~~~~l~~~la~~~g~~---~~v~~~sGt~A~~~~l~~~--------~~~gd~vi~~~~~~~~~~~~~~~~~~~~ 121 (421)
T 2ctz_A 53 SRIMNPTVDVLEKRLAALEGGK---AALATASGHAAQFLALTTL--------AQAGDNIVSTPNLYGGTFNQFKVTLKRL 121 (421)
T ss_dssp BTTBCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEECSCCCHHHHHHHHTHHHHT
T ss_pred cCCCChHHHHHHHHHHHHhCCC---ceEEecCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHHc
Confidence 3334567899999999999985 3456666799999999976 4789999999999999988886656778
Q ss_pred CcEEEEE-eCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccc-cc
Q 012991 155 GGSVVEV-QLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAH-AM 232 (452)
Q Consensus 155 g~~v~~~-~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~-~~ 232 (452)
|++++.+ +.. + ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|+++ +.
T Consensus 122 g~~~~~~~~~~----d----~~~l~~~i------~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~-~livD~~~~~~ 186 (421)
T 2ctz_A 122 GIEVRFTSREE----R----PEEFLALT------DEKTRAWWVESIGNPALNIPDLEALAQAAREKGV-ALIVDNTFGMG 186 (421)
T ss_dssp TCEEEECCTTC----C----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTC-EEEEECGGGGG
T ss_pred CCEEEEECCCC----C----HHHHHHhh------ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCC-EEEEECCcccc
Confidence 9999888 541 2 68899988 5789999999999999999999999999999999 89999999 87
Q ss_pred CCccccccccCccEEEEcCcccCcCCCC-cEEEEEec---Cc----cccCCCCCceeccCCCCcc--------c--ccc-
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPPS-VAFLYCRK---SI----LSSDMHHPVVSHEFGNGLP--------I--ESA- 293 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~G-~G~l~~~~---~~----~~~~l~~~~~~~~~~~~~~--------~--~~~- 293 (452)
|... .....++|++++|+||+++++.+ +|.+++.+ ++ ... +.... ..+.+.... . ...
T Consensus 187 g~~~-~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~-l~~~~-~g~~g~~~~~~~~~~~~~~~~r~~ 263 (421)
T 2ctz_A 187 GYLL-RPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPL-LTEPQ-PGYHGLRLTEAFGELAFIVKARVD 263 (421)
T ss_dssp GTSC-CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHH-HHSCB-GGGTTBCHHHHHGGGHHHHHHHHT
T ss_pred cccC-CccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhh-hcccc-chhhhhhhhhhcchhHHHHHHHHH
Confidence 7532 22245799999999998766543 56666642 22 111 11111 000111000 0 000
Q ss_pred ---cccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CCc---------------cccc
Q 012991 294 ---WIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG-SPP---------------EICA 354 (452)
Q Consensus 294 ---~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~---------------~~~~ 354 (452)
..|. ...-.....++.-+. .+....++..++++++.+.|.+.+++..+ .|. ...+
T Consensus 264 ~~~~~g~--~~~~~~a~~~~~~l~----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g 337 (421)
T 2ctz_A 264 GLRDQGQ--ALGPFEAWVVLLGME----TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPG 337 (421)
T ss_dssp HHHHHCC--CCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCC
T ss_pred HHHhcCC--CCCHHHHHHHHcCcc----hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCc
Confidence 0110 001011111122222 23334555668999999999988777643 221 2357
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCC-----CCCCCCCCCC--CCCCCCccceEEecccccCCHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAP-----KDDGQPQAGA--RDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~ 427 (452)
+++.|.++. ...+...+.+.|.. +++.++.+.... ....++.... .+..+..++.+|+|++. +
T Consensus 338 ~ivsf~l~~-----~~~~~~~~~~~l~~-~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e 407 (421)
T 2ctz_A 338 AVLTFGLKG-----GYEAAKRFISRLKL-ISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----E 407 (421)
T ss_dssp SEEEEEETT-----HHHHHHHHHHTCSS-SEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----S
T ss_pred eEEEEEeCC-----CHHHHHHHHHhCCc-ceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----C
Confidence 889998851 11234556666532 455554331110 0000111111 11123446899999975 4
Q ss_pred HHHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILLV 440 (452)
Q Consensus 428 di~~l~~~l~~~~ 440 (452)
|++.+++.|++.+
T Consensus 408 ~~~~li~~l~~al 420 (421)
T 2ctz_A 408 HVEDLKAELKEAL 420 (421)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 6666677666654
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-23 Score=203.93 Aligned_cols=327 Identities=12% Similarity=0.030 Sum_probs=211.4
Q ss_pred CCCC-cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 48 FGSC-PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 48 ~~~~-p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
.++. |+.+.+++.+.+........ .....+...+++++++++++.+.+++|+||+||++|+..++.++.
T Consensus 56 lG~~~~p~v~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~------- 125 (419)
T 2eo5_A 56 LGWPSHPEVIKIGIEQMQKLAHAAA---NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVK------- 125 (419)
T ss_dssp TCBSCCHHHHHHHHHHHTTSCCCSC---SCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHH-------
T ss_pred cCCCCCHHHHHHHHHHHhhCccccc---cccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHH-------
Confidence 3444 78899999887754211010 112244567888999999998424799999999999999998652
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHH-----hcC-----cEEEEEeCCCCCCC-hH------------HHHHHHH-HHHh
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVT-----RAG-----GSVVEVQLPFPLAS-EE------------EIINEFK-KGIE 182 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~-----~~g-----~~v~~~~~~~~~~~-~~------------~~~~~l~-~~i~ 182 (452)
..+|++|++.++.|++.......+.. +.+ .+++.++.+..... .+ ..+++|+ +.++
T Consensus 126 ~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~ 205 (419)
T 2eo5_A 126 NTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFV 205 (419)
T ss_dssp TTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHH
T ss_pred HhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHh
Confidence 11289999999998865444332111 001 24666654211000 00 1278888 8885
Q ss_pred ccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHK 253 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K 253 (452)
+.. ..+++++|+++..+|++|.+.+ +++|.++|++||+ ++|+|++|+ ++... .+.....+|+++ ++|
T Consensus 206 ~~~-~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~-~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t--~sK 281 (419)
T 2eo5_A 206 NLV-PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGI-LLVDDEVQMGLGRTGKLFAIENFNTVPDVIT--LAK 281 (419)
T ss_dssp HTC-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECG
T ss_pred hcc-CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCccCcchhhHHhcCCCCCEEE--ecc
Confidence 310 0146778887766778998766 8999999999999 899999997 44321 222234567774 569
Q ss_pred cCcCC-CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 254 WFFCP-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 254 ~l~g~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
+++++ .++|+++++++++ . + .... + .+.+.+...+.+..++++.+. .+.++++++++
T Consensus 282 ~~~~G~~riG~~~~~~~~~-~-~-~~~~----~--------~t~~~n~~~~~aa~aal~~~~-------~~~~~~~~~~~ 339 (419)
T 2eo5_A 282 ALGGGIMPIGATIFRKDLD-F-K-PGMH----S--------NTFGGNALACAIGSKVIDIVK-------DLLPHVNEIGK 339 (419)
T ss_dssp GGGTTTSCCEEEEEEGGGC-C-C-------------------CCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cccCCccceEEEEEchHhh-c-C-Cccc----C--------CCCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 87765 6689999998877 6 3 1110 0 011223334444444555433 26788889999
Q ss_pred HHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 333 KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
++.+.|.++ +.. ....+.++++.+.. +..... +.+.|.+ .||.+..+.
T Consensus 340 ~l~~~L~~~--~~~---~~~~g~~~~i~~~~-----~~~~~~-~~~~l~~-~Gv~v~~~~-------------------- 387 (419)
T 2eo5_A 340 IFAEELQGL--ADD---VRGIGLAWGLEYNE-----KKVRDR-IIGESFK-RGLLLLPAG-------------------- 387 (419)
T ss_dssp HHHHHHTTS--SSE---EEEETTEEEEECSC-----HHHHHH-HHHHHHH-TTEECEEET--------------------
T ss_pred HHHHHHHHh--hhh---eEeeeEEEEEEEec-----CccHHH-HHHHHHH-CCCEEecCC--------------------
Confidence 999988664 211 12236788887730 122355 8888876 599986421
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+++|++++..+|++|+++++++|+++++.
T Consensus 388 ~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 388 RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 368999998888999999999999998754
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=210.38 Aligned_cols=340 Identities=11% Similarity=0.063 Sum_probs=221.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+.... ... +.....+...+++++++++++.+ .++++|++||++|+..++..+...+. ..
T Consensus 88 ~lGh~~p~v~~A~~~~~~~~~-~~~--~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a~~~~~-~~ 162 (457)
T 3tfu_A 88 IHGHGHPALDQALTTQLRVMN-HVM--FGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMALQYWR-GR 162 (457)
T ss_dssp TTCBTCHHHHHHHHHHHHHCS-CCC--SSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHHHHHHH-HT
T ss_pred ccCCCCHHHHHHHHHHHHhcc-Ccc--ccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCcHHHHHHHHHHHHHHHHH-hc
Confidence 345678889999998876531 111 11223566789999999999864 57999999999999999987632110 00
Q ss_pred CCCC-CEEEEeCCcchhHHHHHHHHH----------HhcCcEEEEEeCCCCCCChH-HHHHHHHHHHhccccCCCceEEE
Q 012991 127 FHRN-DTVLMLHCAFQAVKKSIQAYV----------TRAGGSVVEVQLPFPLASEE-EIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 127 ~~~g-~~Vl~~~~~~~s~~~~~~~~a----------~~~g~~v~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
-.+| ++|++.++.|++.......+. ......+..++. +.+... ..+++|++++++. .+++++|
T Consensus 163 g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~d~~~le~~l~~~---~~~~aav 237 (457)
T 3tfu_A 163 GLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQ--VPRDYDPAYSAAFEAQLAQH---AGELAAV 237 (457)
T ss_dssp TCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECC--CCSSCCHHHHHHHHHHHHHH---GGGEEEE
T ss_pred CCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecC--CCcccCHHHHHHHHHHHHhC---CCCEEEE
Confidence 1144 589998888877543332110 001113334433 222222 2388899988643 3578999
Q ss_pred EEec-cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEE
Q 012991 195 IIDH-ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAF 263 (452)
Q Consensus 195 ~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~ 263 (452)
+++. ++|++|.+.+ +++|.++|++||+ ++|+|++++ +|... .+.....+|++++ +|.+.|+ ..+|+
T Consensus 238 i~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gi-llI~DEv~~g~gr~G~~~a~~~~~~~pdiit~--sK~l~gG~~~lG~ 314 (457)
T 3tfu_A 238 VVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV-LLIFDEIATGFGRTGALFAADHAGVSPDIMCV--GKALTGGYLSLAA 314 (457)
T ss_dssp EECSSEECTTTCEECCTHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCCEE
T ss_pred EEeCCCcCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEcCccCCccccchhHhHhcCCCceEEEE--ChhhhCCCcceEE
Confidence 9999 9999999886 8999999999999 899999986 43221 2222335788855 5987775 25899
Q ss_pred EEEecCccccCCC--CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 264 LYCRKSILSSDMH--HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 264 l~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
+++++++.+. +. .+. ....+ .+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|.++
T Consensus 315 v~~~~~i~~~-~~~~~~~-~~~~~--------~t~~~n~~a~aaa~aaL~~~~~-----~~~~~~~~~~~~~l~~~L~~l 379 (457)
T 3tfu_A 315 TLCTADVAHT-ISAGAAG-ALMHG--------PTFMANPLACAVSVASVELLLG-----QDWRTRITELAAGLTAGLDTA 379 (457)
T ss_dssp EEEEHHHHHH-HHHSSSC-SCCCC--------CTTTTCHHHHHHHHHHHHHHHT-----SCHHHHHHHHHHHHHHHHGGG
T ss_pred EEEcHHHHHH-hhccCCC-ceeEe--------cCCCcCHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHH
Confidence 9999888765 21 000 00000 0112233333444445555543 345777888889999998876
Q ss_pred cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 342 WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
............+.++++.++ ...+..++.+.|.++ ||.++. .++++|++++
T Consensus 380 ~~~~~v~~vr~~G~~~~i~l~------~~~~~~~~~~~l~~~-Gv~v~~---------------------~~~~lRi~p~ 431 (457)
T 3tfu_A 380 RALPAVTDVRVCGAIGVIECD------RPVDLAVATPAALDR-GVWLRP---------------------FRNLVYAMPP 431 (457)
T ss_dssp GGSTTEEEEEECSSCEEEEES------SCCCHHHHHHHHHHT-TEECCC---------------------BTTEEEECCC
T ss_pred hcCCCeeeeecCCeEEEEEEC------CcccHHHHHHHHHHC-CeEEEe---------------------cCCEEEEECC
Confidence 322222121223678888776 234567899999875 999852 1368999998
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
...|++|+++++++|++++++
T Consensus 432 ~~~t~eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 432 YICTPAEITQITSAMVEVARL 452 (457)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999875
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-24 Score=211.49 Aligned_cols=342 Identities=11% Similarity=0.015 Sum_probs=220.3
Q ss_pred HHHhhhcc-CCCCeEEeccCCC------CCCcHHHHHHHHH-HHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCC-C--
Q 012991 28 EIRDEFSH-HQHGVARINNGSF------GSCPKSVLADQQK-WQLKFLQQPDDFYFNSLRKGILESRAAVKDLINA-D-- 96 (452)
Q Consensus 28 ~ir~~~~~-~~~~~~~l~~~~~------~~~p~~v~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~-- 96 (452)
.+.+.+.. .+++++.|..+.+ .+.++.+.+++.+ .+.. + ....|....+..++++.++++++. .
T Consensus 18 ~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~----~-~~~~y~~~~g~~~lr~~ia~~~~~~~~~ 92 (412)
T 1yaa_A 18 GIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS----S-YNHEYLGITGLPSLTSNAAKIIFGTQSD 92 (412)
T ss_dssp HHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT----T-CCCCCCCTTCCHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc----c-cccCCCCCCCcHHHHHHHHHHHhcCCCC
Confidence 34444432 2467888877653 2466778888887 6531 1 111233344567889999988832 1
Q ss_pred --CCCcEEE--ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 97 --DVGEISL--VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 97 --~~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
++++|++ |+||++|+.+++..+. .+.+||+|++++|+|++....+ +..|.+++.++...+ +++.
T Consensus 93 ~~~~~~i~~~~t~g~~~a~~~~~~~~~------~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~--~~~~ 160 (412)
T 1yaa_A 93 ALQEDRVISVQSLSGTGALHISAKFFS------KFFPDKLVYLSKPTWANHMAIF----ENQGLKTATYPYWAN--ETKS 160 (412)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHHH------HHCTTCCEEEEESCCTTHHHHH----HTTTCCEEEEECEET--TTTE
T ss_pred CCCcceEEEEeccchHhHHHHHHHHHH------HhCCCCEEEEeCCCCccHHHHH----HHcCceEEEEeeecC--CCCc
Confidence 2579999 9999999998853321 1368999999999999876554 456999999865101 1223
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc--------cc-cc
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI--------KI-DV 239 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~--------~~-~~ 239 (452)
+ +++|++++++. ...+.++++++++||||.+++ +++|+++|++||+ ++|+|++|+.... ++ ++
T Consensus 161 ~d~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~ 236 (412)
T 1yaa_A 161 LDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNH-IALFDTAYQGFATGDLDKDAYAVRLG 236 (412)
T ss_dssp ECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTTSSSCHHHHTHHHHHH
T ss_pred cCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEecccccccCCcccchhHHHHHH
Confidence 3 88999988642 123566677999999999987 4568889999999 8999999853211 12 22
Q ss_pred cccC----ccEEEEcCcccCcCCCC--cEEEE--E-----ecC----ccccCCCCCceeccCCCCcccccccccccCccc
Q 012991 240 KEIG----ADFYVSNLHKWFFCPPS--VAFLY--C-----RKS----ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSA 302 (452)
Q Consensus 240 ~~~~----~d~~~~s~~K~l~g~~G--~G~l~--~-----~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (452)
...+ .++++.|++|. +|++| +|+++ . +++ ++.. + ... ......+++...
T Consensus 237 ~~~~~~~~~~i~~~s~sK~-~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~ 302 (412)
T 1yaa_A 237 VEKLSTVSPVFVCQSFAKN-AGMYGERVGCFHLALTKQAQNKTIKPAVTSQ-L-AKI-----------IRSEVSNPPAYG 302 (412)
T ss_dssp HHHTTTTCCEEEEEECTTT-SCCGGGCEEEEEEECCSCTTHHHHHHHHHHH-H-HHH-----------HHTTTSSCCHHH
T ss_pred HhcCCCCcceEEEeccCCC-CCCcCCcceEEEEEecCCCCCHHHHHHHHHH-H-HHH-----------HhhccCCCChHH
Confidence 2223 35788899996 67777 68887 5 444 4432 1 000 000112334444
Q ss_pred cccHHHHHHHHH---HhhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHH
Q 012991 303 QLVIPSAVTFVS---RFEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 303 ~~~~~~al~~~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
+.++.++++... .+....+.++++++++++++.+.|.+++ ++++..+.. +.++++.+ +...+
T Consensus 303 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~ 370 (412)
T 1yaa_A 303 AKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQC--GMFSFTGL----------TPQMV 370 (412)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCC--SSEEECCC----------CHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCc--eEEEeeCC----------CHHHH
Confidence 444444554321 0012477888899999999999999874 366543332 44444322 33456
Q ss_pred HHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 377 RGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...| +++||.+. .++|||++. .+++++++++++|+++++.
T Consensus 371 ~~~l-~~~gi~v~------------------------~~~Ris~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 371 KRLE-ETHAVYLV------------------------ASGRASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp HHHH-HHHCEECC------------------------TTSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred HHHH-HhCCEEec------------------------cCcEEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence 4555 44599984 157999985 5899999999999998863
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=204.34 Aligned_cols=309 Identities=16% Similarity=0.138 Sum_probs=198.9
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH-HH
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY-VT 152 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~-a~ 152 (452)
|++...+..++++++++++++.+ .+++++||++|+..+ .++ +++||+|+++++.|++.+..+..+ ..
T Consensus 61 y~r~~~p~~~~l~~~la~l~g~~---~~~~~~sG~~Ai~~~-~~l--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~ 128 (400)
T 3nmy_A 61 YSRTHNPTRFAYERCVAALEGGT---RAFAFASGMAATSTV-MEL--------LDAGSHVVAMDDLYGGTFRLFERVRRR 128 (400)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHH-HTT--------SCTTCEEEEESSCCHHHHHHHHHTHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCC---CEEEecCHHHHHHHH-HHH--------cCCCCEEEEeCCCchHHHHHHHHhhHh
Confidence 44555677899999999999984 677788889999874 433 589999999999999888777665 56
Q ss_pred hcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccccc
Q 012991 153 RAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAM 232 (452)
Q Consensus 153 ~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~ 232 (452)
+.|++++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|++||+ ++|+|++++.
T Consensus 129 ~~g~~~~~v~~----~d----~~~l~~~i------~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~-~livDe~~~~ 193 (400)
T 3nmy_A 129 TAGLDFSFVDL----TD----PAAFKAAI------RADTKMVWIETPTNPMLKLVDIAAIAVIARKHGL-LTVVDNTFAS 193 (400)
T ss_dssp HHCCEEEEECT----TS----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTTH
T ss_pred hcCeEEEEECC----CC----HHHHHHHh------ccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCC-EEEEECCCcc
Confidence 77999999943 33 68899998 5789999999999999999999999999999999 8999999986
Q ss_pred CCccccccccCccEEEEcCcccCcCCC-C-cE-EEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPP-S-VA-FLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~-G-~G-~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
+.... ...+++|+++.|++|+++|+. . .| +++.+ +++.+. + ... . .......+ ......
T Consensus 194 ~~~~~-~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~-l-~~~-~----------~~~g~~~~---~~~a~~ 256 (400)
T 3nmy_A 194 PMLQR-PLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQ-M-AFL-Q----------NSIGGVQG---PFDSFL 256 (400)
T ss_dssp HHHCC-GGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHH-H-HHH-H----------HHHCCBCC---HHHHHH
T ss_pred cccCC-hhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHH-H-HHH-H----------HhcCCCCC---HHHHHH
Confidence 54321 122479999999999877652 1 25 44443 334333 1 000 0 00001111 112222
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhH
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDA 373 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 373 (452)
+++.++ .+....++..+++.++.+.|.+.+.+. +..|. ...+++++|.++. +....
T Consensus 257 ~l~~l~----~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~-----~~~~~ 327 (400)
T 3nmy_A 257 ALRGLK----TLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG-----GFDAA 327 (400)
T ss_dssp HHHHHT----THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-----HHHHH
T ss_pred HHHhHh----HHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC-----cHHHH
Confidence 333333 345556677888889999998776553 32221 2347899998861 12345
Q ss_pred HHHHHHHhhhcceEeeecccCC-----CCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHH
Q 012991 374 LRLRGHLRVRFGVEVPIHYQAP-----KDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 374 ~~l~~~L~~~~gI~v~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
..+.+.|. .+++.+..+.... ..-.+..... ..+.+..++.+|+|++..+.++.++.+..+|
T Consensus 328 ~~~~~~l~-~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al 396 (400)
T 3nmy_A 328 KRFCEKTE-LFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL 396 (400)
T ss_dssp HHHHHHCS-SSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHcCC-cceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHH
Confidence 66777774 3455554322110 0000000000 0011345789999998654444344443333
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-23 Score=203.72 Aligned_cols=358 Identities=10% Similarity=0.026 Sum_probs=205.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+.... .... .....+...+++++++++++.+ .++|+||+||++|+..++.++...+.+..
T Consensus 42 ~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~al~~~~~~~~~~g 117 (430)
T 3i4j_A 42 NIGHGRAEVGERMAAQAARLP-FVHG--SQFSSDVLEEYAGRLARFVGLP-TFRFWAVSGGSEATESAVKLARQYHVERG 117 (430)
T ss_dssp TTCBCCHHHHHHHHHHHHHCC-CCCT--TTCEEHHHHHHHHHHHHHTTCT-TCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHHHHHhcc-cccc--cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence 345557889999998876531 1111 1234566788999999999875 68999999999999999987642111000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhcCc-----------EEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRAGG-----------SVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-----------~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
..++++|++.++.|++.......+...... .+..++.+.... .+.. +++|++.+++.. .+++++|
T Consensus 118 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~le~~l~~~~--~~~~~~v 194 (430)
T 3i4j_A 118 EPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR-NGAEDAEGLRALLEREG--PETVAAF 194 (430)
T ss_dssp CTTCCEEEEETTC-------------------------CGGGSCEECCCCTTS-CHHHHHTHHHHHHHHHC--GGGEEEE
T ss_pred CCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccc-hhhHHHHHHHHHHHhcC--CCCEEEE
Confidence 134689999999998765443322111000 222332211000 0233 788888886420 1567888
Q ss_pred EEeccCC-CCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----ccccc-ccCccEEEEcCcccCcCC-CCcE
Q 012991 195 IIDHITS-MPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVK-EIGADFYVSNLHKWFFCP-PSVA 262 (452)
Q Consensus 195 ~~~~~~n-~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~-~~~~d~~~~s~~K~l~g~-~G~G 262 (452)
+++.+++ ++|.+.+ +++|.++|++||+ ++|+|++|+ ++.. ..+.. ...+|++++ +|++.++ ..+|
T Consensus 195 i~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~--sK~l~~G~~r~G 271 (430)
T 3i4j_A 195 MAEPVVGASDAALAPAPGYYERVRDICDEAGI-IFIADEVMSGMGRCGSPLALSRWSGVTPDIAVL--GKGLAAGYAPLA 271 (430)
T ss_dssp EECSSCCGGGTTCCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEE--CGGGTTTSSCCE
T ss_pred EEcCcccCcCCcccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCcccchhhhhhhcCCCCcEEEE--cccccCCccccE
Confidence 8888888 8998877 8999999999999 899999987 4322 11222 334677765 5986653 3479
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
++++++++++. +.... . ......+.+.+...+.+..++++.+.+ +.+.++++++.+++++.|.++.
T Consensus 272 ~~~~~~~i~~~-~~~~~-~-------~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~~~~l~~~~ 337 (430)
T 3i4j_A 272 GLLAAPQVYET-VMGGS-G-------AFMHGFTYAGHPVSVAAGLSVLDIVER-----EDLTGAAKERGAQLLAGLQALQ 337 (430)
T ss_dssp EEEECHHHHHH-HHHTT-C-------BCCCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHH-HhccC-C-------cccccCCCCCCHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHHHHH
Confidence 99998887765 21100 0 000000112233344444445555443 3356666677777777776542
Q ss_pred -CCCcCCCcccccceEEEEcCCccccCC---hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 343 -GTSLGSPPEICAAMVMVGLPSRLRVMG---EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
...........+.++++.+.+...... .....++.+.|.++ ||.+..+..+.. +..++++|+
T Consensus 338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~-------------~~~~~~iRi 403 (430)
T 3i4j_A 338 ARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKR-GLITYPGSGAEP-------------NGRGDHLLL 403 (430)
T ss_dssp HHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHT-TEECC------------------------CEEEE
T ss_pred HhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhC-CCEEEecccccC-------------CCCCCEEEE
Confidence 111111111236677777642100000 11246788888765 999875422211 123578999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++...|++++++++++|++++++
T Consensus 404 ~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 404 GPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999888999999999999999864
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=203.77 Aligned_cols=357 Identities=9% Similarity=0.063 Sum_probs=218.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|+.++.|.+++.+.+.... . .......+...+++++++++++.+ .+ ++||+|||+|+..++.++...+....
T Consensus 62 ~lG~~~p~v~~A~~~~~~~~~-~---~~~~~~~~~~~~la~~l~~~~~~~-~~-v~~~~ggseA~~~al~~~~~~~~~~g 135 (452)
T 3n5m_A 62 NSGYGRKELAEAAYKQLQTLS-Y---FPMSQSHEPAIKLAEKLNEWLGGE-YV-IFFSNSGSEANETAFKIARQYYAQKG 135 (452)
T ss_dssp TTCBCCHHHHHHHHHHHTTCC-C---CCTTSEEHHHHHHHHHHHHHHTSC-EE-EEEESSHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHhcC-C---cccccCCHHHHHHHHHHHHhCCCC-ce-EEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 455677889999998775421 1 111234567789999999999875 45 99999999999999997642110000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh---------cCcEEEEEeCCC----CCCC----hHHH-HHHHHHHHhccccCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR---------AGGSVVEVQLPF----PLAS----EEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~---------~g~~v~~~~~~~----~~~~----~~~~-~~~l~~~i~~~~~~~ 188 (452)
..++++|++.++.|++.......+... ....+..++.+. +.++ .... +++|++.+++. +.
T Consensus 136 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~ 213 (452)
T 3n5m_A 136 EPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE--LS 213 (452)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CG
T ss_pred CCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc--CC
Confidence 016789999999998754333221000 001234443211 1111 1112 68888888521 12
Q ss_pred CceEEEEEecc-CCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHI-TSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
+++++|+++.+ +| +|.+.| +++|.++|++||+ ++|+|++|+ +|.. ..+.....+|++++| |++.++
T Consensus 214 ~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G 289 (452)
T 3n5m_A 214 ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGA-LLISDEVICGFGRTGKAFGFMNYDVKPDIITMA--KGITSA 289 (452)
T ss_dssp GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTT
T ss_pred CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCC-EEEEecchhCCCcccccchhhhcCCCCCEEeec--ccccCC
Confidence 57889999988 89 999887 9999999999999 899999987 4322 123333357877655 876655
Q ss_pred -CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 259 -PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 259 -~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
.++|++++++++++. +.... ..... .. ..+.+.+..++.+..++++.+.+ +.+.++++++.+++++.
T Consensus 290 ~~~ig~~~~~~~i~~~-~~~~~----~~~~~-~~-~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~ 357 (452)
T 3n5m_A 290 YLPLSATAVKREIYEA-FKGKG----EYEFF-RH-INTFGGNPAACALALKNLEIIEN-----ENLIERSAQMGSLLLEQ 357 (452)
T ss_dssp SSCCEEEEEEHHHHGG-GCSSS----TTCSC-CC-CCSSTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHH
T ss_pred CcceEEEEECHHHHHH-Hhhcc----CCCCc-cc-cCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHH
Confidence 568999999888775 21100 00000 00 00112233333344445554442 34567778888888888
Q ss_pred HHHH-cCCCcCCCcccccceEEEEcCCccccCC---hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 338 LANA-WGTSLGSPPEICAAMVMVGLPSRLRVMG---EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 338 L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
|.++ ............+.++++.+........ .....++.+.|.++ ||.+..+..+.. ..+
T Consensus 358 L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~~--------------~~~ 422 (452)
T 3n5m_A 358 LKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEK-GLIIGRNGMTTA--------------GYN 422 (452)
T ss_dssp HHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHT-TEECEECTTSST--------------TCC
T ss_pred HHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHC-CcEEeecCcccC--------------CCC
Confidence 8765 2222211112235566665531100000 11235688888765 999976544321 235
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++...|++||++++++|++++++
T Consensus 423 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 423 NILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 79999998889999999999999998753
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-25 Score=216.44 Aligned_cols=329 Identities=12% Similarity=0.015 Sum_probs=212.8
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHH-----HHHHHHHHhHhCC-----CCCCcEEEec
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGI-----LESRAAVKDLINA-----DDVGEISLVD 105 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~la~~~~~-----~~~~~i~~t~ 105 (452)
+..+++|+.+.+. +.|+.+.+++.+.... ........|....+. .++|++++++++. ...++|++|+
T Consensus 21 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~--~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~ 98 (391)
T 3bwn_A 21 SDFVVNLDHGDPTAYEEYWRKMGDRCTVTI--RGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGT 98 (391)
T ss_dssp TTSCEECSSCCCGGGHHHHHHTGGGSCEEE--CTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEE
T ss_pred CCCeeEcCCCCCCCCCCHHHHHhHHHHhhc--CccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeC
Confidence 4668999988776 3333344443221100 000111223334444 8899999998872 2136899999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCC----EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHH
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRND----TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGI 181 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~----~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i 181 (452)
|+++++.+++.++ +++|| +|++++|+|.+....+ +..|.+++.+++ +. +. +
T Consensus 99 G~~~al~~~~~~l--------~~~Gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~----d~-----~~----l 153 (391)
T 3bwn_A 99 GSTQLCQAAVHAL--------SSLARSQPVSVVAAAPFYSTYVEET----TYVRSGMYKWEG----DA-----WG----F 153 (391)
T ss_dssp HHHHHHHHHHHHH--------HHTSSSSSEEEEECSSCCTHHHHHH----HTTCBTTEEEEE----ES-----TT----C
T ss_pred ChHHHHHHHHHHh--------cCCCCCCcceEEEcCCCchhHHHHH----HHcCCeEEEecC----CH-----HH----c
Confidence 9999999999987 37889 9999999999875554 456888887754 21 11 1
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-cccccccCccEEEEcCcccCcCCCC
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+ .+++++|++++++||||.+++ +|++.++++++ ++|+|++++.+.. ++.. ..+.++++.|+||. +|++|
T Consensus 154 ~-----~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~-~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~-~g~~G 223 (391)
T 3bwn_A 154 D-----KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEA-KVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKI-TGHAG 223 (391)
T ss_dssp C-----CCSCEEEEEESSCTTTCCCCC--CCC-----CCC-EEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHH-HSCGG
T ss_pred C-----CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCC-EEEEeCCCCCCCCCcccc-CCCCeEEEEechhh-cCCCc
Confidence 1 257899999999999999996 55442222339 7999999985421 2222 23568999999995 78888
Q ss_pred --cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHH-------hhcCHHHHHHHHHHH
Q 012991 261 --VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR-------FEGGIDGIMQRNHEQ 330 (452)
Q Consensus 261 --~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-------~~~g~~~~~~~~~~~ 330 (452)
+|++++ +++++.. + ... ......+.+...+.++..+++.... ....++.++++++++
T Consensus 224 lRiG~~~~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (391)
T 3bwn_A 224 SRIGWALVKDKEVAKK-M-VEY-----------IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNR 290 (391)
T ss_dssp GCEEEEEECCHHHHHH-H-HHH-----------HHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHH
T ss_pred cceEEEEecCHHHHHH-H-HHH-----------hcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHH
Confidence 599987 6666654 1 111 0001123344444455555543321 012477888899999
Q ss_pred HHHHHHHHHHHcCCCcCCCccc-----------ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEI-----------CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
++++.+.|.+++++.+..+... .+.++|+.++. ...+.+.|.+ +||.+.++..+.
T Consensus 291 ~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~---------~~~~~~~l~~-~gV~v~pg~~fg---- 356 (391)
T 3bwn_A 291 WEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE---------ETDLVSELRR-HKVMSRAGERCG---- 356 (391)
T ss_dssp HHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS---------SCCHHHHHHH-TTEECEEGGGGT----
T ss_pred HHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc---------HHHHHHHHHH-CCEEEccCCCCC----
Confidence 9999999988766665544321 13477887751 1245566654 699998876652
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+++|+|++. +++++++++++|+++++.
T Consensus 357 -----------~~~~~iRis~~~--~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 357 -----------SDKKHVRVSMLS--REDVFNVFLERLANMKLI 386 (391)
T ss_dssp -----------CCTTEEEEESCS--CHHHHHHHHHHHHSCC--
T ss_pred -----------CCCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 235799999984 899999999999987754
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=209.78 Aligned_cols=297 Identities=14% Similarity=0.061 Sum_probs=193.4
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC--EEEEeCCcchhHHHHHHHHHHh
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND--TVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~--~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
+...+...+++++++++++.+ ..++++|||+|+.+++.++. .+|| .|+++.+.|.+.+..... +..
T Consensus 43 y~~~~~~~~l~~~la~~~~~~---~~i~~~~G~~a~~~al~~~~--------~~gd~~~vi~~~~~~~~~~~~~~~-~~~ 110 (357)
T 3lws_A 43 YGTGAIIEPFEQKFADVLGMD---DAVFFPSGTMAQQVALRIWS--------DETDNRTVAYHPLCHLEIHEQDGL-KEL 110 (357)
T ss_dssp TTEETTHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHHH--------HHHTCCEEEECTTCHHHHSSTTHH-HHH
T ss_pred ccCChHHHHHHHHHHHHhCCC---cEEEecCcHHHHHHHHHHHh--------hcCCCcEEEecccceeeeeccchh-hhc
Confidence 334566889999999999985 34666889999999888763 5666 777777777665432111 344
Q ss_pred cCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-ccccc---HHHHHHHHHHcCCCEEEEec
Q 012991 154 AGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIP---VRKLVKICRDEGVDQVFVDA 228 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~ivD~ 228 (452)
.|.+++.++. + ++.+ +++++++. ++++|++++++||+ |.++| +++|+++|++||+ ++|+|+
T Consensus 111 ~g~~~~~v~~----~-~~~~d~~~l~~~~--------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~-~li~D~ 176 (357)
T 3lws_A 111 HPIETILVGA----A-DRLMTLDEIKALP--------DIACLLLELPQREIGGVAPAFSELETISRYCRERGI-RLHLDG 176 (357)
T ss_dssp SSCEEEECSC----T-TSCCCHHHHHTCC--------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTC-EEEEEE
T ss_pred cCcEEEEecC----C-CCCcCHHHHhcCc--------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCC-EEEEEC
Confidence 5888888742 2 2233 77777652 28899999999998 99886 7789999999999 799999
Q ss_pred cccc------CCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccc
Q 012991 229 AHAM------GSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSA 302 (452)
Q Consensus 229 a~~~------g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (452)
++.. +....++. ...|+++.|+||++.||.| |+++.++++++. + ... ...++ +......
T Consensus 177 a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~-~-~~~-~~~~~----------~~~~~~~ 241 (357)
T 3lws_A 177 ARLFEMLPYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQT-A-RIW-KRRYG----------GDLISLY 241 (357)
T ss_dssp TTHHHHHHHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHHH-H-HHH-HHHTT----------CCCSCCH
T ss_pred chhhhhhhhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHHH-H-HHH-HHHhc----------CCcccch
Confidence 8762 11111111 2478899999998778888 998888877765 1 111 00011 1111111
Q ss_pred cccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc-CCCcccccceEEEEcCCccccCChhhHHHHHHHHh
Q 012991 303 QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLR 381 (452)
Q Consensus 303 ~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 381 (452)
..+. +++..+... .+. .++..++++++.+.|.+++++++ ..++. ++++++.++.. ...+..++.+.|.
T Consensus 242 ~~~~-~~~~~l~~~---~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~l~ 310 (357)
T 3lws_A 242 PYIV-SADYYYELR---KDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPV--SNMFHLHFDGQ----AADISPKLEQVQE 310 (357)
T ss_dssp HHHH-HHHHHHHHH---TTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCS--SSEEEEEEESC----HHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH---HHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCc--ceEEEEEecCC----hHHHHHHHHHHHH
Confidence 1111 122222221 122 23346778889999998888876 34443 67888887621 0134677888887
Q ss_pred hhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc---CCHHHHHHHHHHHHHHH
Q 012991 382 VRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY---NTLEDYEKFRDAVILLV 440 (452)
Q Consensus 382 ~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~---~t~~di~~l~~~l~~~~ 440 (452)
++ ||.++.+..+ .....++|++++.. .+.++++..++.|++.+
T Consensus 311 ~~-Gi~v~~g~~~---------------~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 311 ET-GLGFVGYLVD---------------KDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HH-CEESCSCCEE---------------CSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred hc-CeEEeccccc---------------CCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 65 9999766433 12235899988633 47888888888887754
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-22 Score=199.99 Aligned_cols=341 Identities=12% Similarity=0.097 Sum_probs=214.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.|.+++.+.+.... ...+.....+...++.++++++++.+..++++||+|||+|+..++..+. . .
T Consensus 78 lGh~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~-~-----~ 148 (453)
T 4ffc_A 78 VGASHPAVAAAIADQATHFT---HTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVAR-L-----A 148 (453)
T ss_dssp TCTTCHHHHHHHHHHHHHCS---CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHH-H-----H
T ss_pred CCCCCHHHHHHHHHHHHhcc---ccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHH-H-----h
Confidence 45668889999998876531 1111223456778899999999986434799999999999999997552 1 1
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhc----------CcEEEEEeCCCCCCC------hH--HH-HHHHHHHHhccccCC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRA----------GGSVVEVQLPFPLAS------EE--EI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~----------g~~v~~~~~~~~~~~------~~--~~-~~~l~~~i~~~~~~~ 188 (452)
..+++|++.++.|++.......+.... ...+..++.+.+..+ .. .. .+.|++.+. .
T Consensus 149 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~-----~ 223 (453)
T 4ffc_A 149 TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG-----A 223 (453)
T ss_dssp HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC-----G
T ss_pred cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC-----C
Confidence 346799999999987655443321000 114555654322211 11 11 466666662 2
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
.++++|+++..+++.|.+.+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++++| |++.++.
T Consensus 224 ~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~s--K~~~~G~ 300 (453)
T 4ffc_A 224 QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGV-VFIADEVQTGFARTGAWFASEHEGIVPDIVTMA--KGIAGGM 300 (453)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTS
T ss_pred CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEecCccCCCcccccchhhhcCCCcchHhhh--hhhcCCc
Confidence 45677787777666777766 8999999999999 899999986 33221 12223356777654 9876555
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
.+|++++++++++. + .+.. .+ .+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|.
T Consensus 301 ~~G~~~~~~~i~~~-~-~~~~---~~--------~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~l~ 362 (453)
T 4ffc_A 301 PLSAVTGRAELMDA-V-YAGG---LG--------GTYGGNPVTCAAAVAALGVMRE-----LDLPARARAIEASVTSRLS 362 (453)
T ss_dssp SCEEEEEEHHHHTT-S-CTTS---SC--------CSSSSCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECHHHHhh-h-cccC---cC--------CCCCcCHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHH
Confidence 58999999888775 2 2110 00 0112233333344445555442 3456666777777777776
Q ss_pred HHc-CCCcCCCcccccceEEEEcCCc-cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 340 NAW-GTSLGSPPEICAAMVMVGLPSR-LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 340 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
++. ...........+.++++.+.+. ....+.....++.+.|.++ ||.+..+.. .++++|
T Consensus 363 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~------------------~~~~iR 423 (453)
T 4ffc_A 363 ALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGT------------------FGNVIR 423 (453)
T ss_dssp HHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECCEECT------------------TSCEEE
T ss_pred HHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhC-CCEEecCCC------------------CCCEEE
Confidence 541 1211111222366777776320 0001234567888888775 999865321 236899
Q ss_pred ecccccCCHHHHHHHHHHHHHHHhc
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++...+++|+++++++|++++++
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 424 LLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999888999999999999999865
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=199.68 Aligned_cols=353 Identities=10% Similarity=0.078 Sum_probs=209.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+.... .........+...++.++++++++.+ .++++||+||++|+..++.++...+...-
T Consensus 57 ~lG~~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~~~~~~~~G 132 (448)
T 3dod_A 57 VHGHRKKELDDAIKKQLGKIA---HSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMAFQYWKNIG 132 (448)
T ss_dssp SSCBSCHHHHHHHHHHHTTCS---CCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhcc---CccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHHHHHHHhhC
Confidence 345678889999998775421 11111233456788999999999764 57999999999999999987742110000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhc---------CcEEEEEeCCCCC---C-C---hHH-HHHHHHHHHhccccCCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRA---------GGSVVEVQLPFPL---A-S---EEE-IINEFKKGIEKGKKDGK 189 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~---------g~~v~~~~~~~~~---~-~---~~~-~~~~l~~~i~~~~~~~~ 189 (452)
...+++|++.++.|++.......+.... ...+..++.+... + . ... .+++|++++++. .+
T Consensus 133 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~ 209 (448)
T 3dod_A 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEH---HE 209 (448)
T ss_dssp CTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHH---GG
T ss_pred CCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhC---CC
Confidence 0115899999999987543332211100 0122334321100 0 0 011 278888888632 25
Q ss_pred ceEEEEEeccC-CCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC-
Q 012991 190 MIRLAIIDHIT-SMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP- 258 (452)
Q Consensus 190 ~~~lv~~~~~~-n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~- 258 (452)
++++|+++.++ +++|.+.+ +++|.++|++||+ ++|+|++|+ +|.. ..+.....+|++++| |++.++
T Consensus 210 ~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~-~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~G~ 286 (448)
T 3dod_A 210 EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDV-LMIVDEVATGFGRTGKMFACEHENVQPDLMAAG--KGITGGY 286 (448)
T ss_dssp GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTS
T ss_pred CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCC-EEEEeccccCCCcccchhhhhhcCCCCCEEEec--ccccCCc
Confidence 68889999888 89998876 8999999999999 899999987 4322 122223357777654 987665
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|++++++++++. +..... . ... .....+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|
T Consensus 287 ~~ig~v~~~~~~~~~-~~~~~~-~--~~~--~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~~~~l 355 (448)
T 3dod_A 287 LPIAVTFATEDIYKA-FYDDYE-N--LKT--FFHGHSYTGNQLGCAVALENLALFES-----ENIVEQVAEKSKKLHFLL 355 (448)
T ss_dssp SCCEEEEEEHHHHHT-TCSCGG-G--CCC--CCCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECHHHHHH-hhhccc-c--CCc--ccccCCCCcCHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHH
Confidence 257999999888775 221000 0 000 00000112233333444445555442 345667778888888888
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCCh----h-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE----D-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.++............+.++++.+++....... . ...++.+.|.++ ||.+.++ +
T Consensus 356 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~---------------------~ 413 (448)
T 3dod_A 356 QDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL---------------------G 413 (448)
T ss_dssp HHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE---------------------T
T ss_pred HHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc---------------------C
Confidence 76433332222223466778877531110000 0 146788888775 9998532 2
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++...|+++|++++++|++++++
T Consensus 414 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 414 DVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 68999998888999999999999999865
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=202.53 Aligned_cols=349 Identities=9% Similarity=0.068 Sum_probs=217.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.|.+++.+.+...... ........+...++.++++++++.+ .++|+|++||++|+..++.++........
T Consensus 63 ~lG~~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~~~~~~~~g 139 (459)
T 4a6r_A 63 NVGYGRKDFAEAARRQMEELPFY--NTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMVRRYWDVQG 139 (459)
T ss_dssp TTCBCCHHHHHHHHHHHHHCSCC--CTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhcccc--ccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 34566788999999887653211 1111224566788999999999874 68999999999999999987742111000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh---------cCcEEEEEeCCCC------CCCh--HHH-HHHHHHHHhccccCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR---------AGGSVVEVQLPFP------LASE--EEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~---------~g~~v~~~~~~~~------~~~~--~~~-~~~l~~~i~~~~~~~ 188 (452)
..++++|++.++.|++.......+... ....+..++.++. .+.+ ... +++|++.+++.. .
T Consensus 140 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~--~ 217 (459)
T 4a6r_A 140 KPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIG--A 217 (459)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC--G
T ss_pred CCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcC--C
Confidence 125789999999998765443322000 0113444543210 0111 112 688888886321 1
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP- 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~- 258 (452)
+++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++++| |++.|+
T Consensus 218 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~ 294 (459)
T 4a6r_A 218 DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDV-LLVADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGY 294 (459)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTS
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcccccchHhhcCCCCCeeehh--hhhcCCC
Confidence 46788999888888898887 9999999999999 899999986 43221 22223357888765 987664
Q ss_pred CCcEEEEEecCccccCCCC--CceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHH--PVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH-EQALKMA 335 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~-~~~~~l~ 335 (452)
..+|++++++++++. +.. ... ... +.+.+..++.+..++++.+.+ +.+.++.+ ++.++++
T Consensus 295 ~~lg~v~~~~~i~~~-~~~~~~~~---------~~~--t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~~~ 357 (459)
T 4a6r_A 295 LPIGAVFVGKRVAEG-LIAGGDFN---------HGF--TYSGHPVCAAVAHANVAALRD-----EGIVQRVKDDIGPYMQ 357 (459)
T ss_dssp SCCEEEEECHHHHHH-HHHHCTTH---------HHH--HHCSCHHHHHHHHHHHHHHHH-----TCHHHHHHHTHHHHHH
T ss_pred CCccceeeCHHHHHH-hhcCCCcc---------cCC--CCCCCHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHH
Confidence 458999998887765 210 100 000 112223333344445555442 33466666 7777777
Q ss_pred HHH-HHHcCCCcCCCcccccceEEEEcCCcccc-----CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 336 RML-ANAWGTSLGSPPEICAAMVMVGLPSRLRV-----MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 336 ~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+.| ..+............+.++++.+...... .......++.+.|.++ ||.++..
T Consensus 358 ~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~------------------ 418 (459)
T 4a6r_A 358 KRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRAC------------------ 418 (459)
T ss_dssp HHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEE------------------
T ss_pred HHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecC------------------
Confidence 777 55433322222223366777766421000 0011256788888775 9998632
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|++++...|++++++++++|++++++
T Consensus 419 ---g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 419 ---GDHIVSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 168999998888999999999999999864
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-24 Score=205.43 Aligned_cols=314 Identities=12% Similarity=0.069 Sum_probs=200.2
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND 131 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~ 131 (452)
++.+.+++.+.. .. ..+...+...+++++++++++.+ ..++++||++|+.+++.++. .+|+
T Consensus 28 ~p~v~~ai~~~~------~~--~~~~~~~~~~~l~~~la~~~~~~---~~i~~~~g~~a~~~a~~~~~--------~~g~ 88 (359)
T 3pj0_A 28 LTEALQNIDDNL------ES--DIYGNGAVIEDFETKIAKILGKQ---SAVFFPSGTMAQQIALRIWA--------DRKE 88 (359)
T ss_dssp HHHHTTTSCTTC------BC--CBTTBSHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHHH--------HHHT
T ss_pred CHHHHHHHHhhc------cc--CcccCCHHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHHH--------hcCC
Confidence 555777776621 11 12334567899999999999985 33667899999999998773 5666
Q ss_pred E--EEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-cccc
Q 012991 132 T--VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVI 207 (452)
Q Consensus 132 ~--Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~ 207 (452)
+ |+++.+.|.+..... .++...|.+++.++. + ++.+ +++++++ .+++++|++++++|++ |.++
T Consensus 89 ~~vvi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~----~-~~~~d~~~l~~~-------~~~~~~v~~~~p~n~~~G~~~ 155 (359)
T 3pj0_A 89 NRRVAYHPLSHLEIHEQD-GLKELQQITPLLLGT----A-NQLLTIDDIKSL-------REPVSSVLIELPQREIGGQLP 155 (359)
T ss_dssp CCEEEECTTCHHHHSSTT-HHHHHHCCEEEECSC----T-TSCCCHHHHHTC-------SSCCSEEEEESSBGGGTSBCC
T ss_pred CcEEEEeccceeeehhcc-hHHHhcCceEEecCC----c-CCCcCHHHHHhc-------cCCceEEEEEecccCCCcccC
Confidence 5 555556655432211 112345889888743 2 2233 7777765 2578999999999887 7998
Q ss_pred cHHHH---HHHHHHcCCCEEEEecccccCCc------cccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCC
Q 012991 208 PVRKL---VKICRDEGVDQVFVDAAHAMGSI------KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHP 278 (452)
Q Consensus 208 ~l~~i---~~l~~~~~~~~~ivD~a~~~g~~------~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~ 278 (452)
|.+++ +++|++||+ ++|+|+++..+.. ..++. .+.|+++.|+||+++++.| |+++.++++++. + ..
T Consensus 156 ~~~~l~~l~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~-~-~~ 230 (359)
T 3pj0_A 156 AFEELEKISEYCHEQGI-SLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQE-A-KI 230 (359)
T ss_dssp CHHHHHHHHHHHHHHTC-EEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHH-H-HH
T ss_pred CHHHHHHHHHHHHHcCC-EEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHH-H-HH
Confidence 86665 999999999 7999998765432 11111 3578999999999888876 888888877765 1 11
Q ss_pred ceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CCcccccceE
Q 012991 279 VVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG-SPPEICAAMV 357 (452)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~ 357 (452)
. ...++ +........+.. ++..+.. ..+. .++..++++++.+.|.+++++++. .++. ++++
T Consensus 231 ~-~~~~~----------~~~~~~~~~~~a-~~~~l~~---~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~ 292 (359)
T 3pj0_A 231 W-KRRYG----------GDLISLYPYILS-ADYYFEK---RIGK-MAEYFEAAKGLAERFNSCSGVKTVPEVPV--SNMF 292 (359)
T ss_dssp H-HHHTT----------CCCSCCHHHHHH-HHHHHHH---HGGG-HHHHHHHHHHHHHHHHTSTTEEEESSSCS--SSEE
T ss_pred H-HHHhC----------CCcchhHHHHHH-HHHHHHH---HHHH-hHHHHHHHHHHHHHHhhCCCceeeccCCc--ceEE
Confidence 0 00011 111111111111 2222222 1222 334677888999999988788763 3433 6677
Q ss_pred EEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc---cCCHHHHHHHHH
Q 012991 358 MVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV---YNTLEDYEKFRD 434 (452)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~t~~di~~l~~ 434 (452)
++.++.. ...+..++.+.|.++ ||.+..+..+.. ...+++|+++.. ..+.++++..++
T Consensus 293 ~~~~~~~----~~~~~~~l~~~l~~~-GV~v~~g~~~~~--------------~~~~~~r~~i~~~~~~~~~e~l~~~l~ 353 (359)
T 3pj0_A 293 HVYFENS----ADEIGAILTKIQDET-GVGISGYLQEKS--------------ADVCAFEVSVGDAFAEIPAKNLELVFR 353 (359)
T ss_dssp EEEESSC----HHHHHHHHHHHHHHH-CEECCSCCEEEE--------------TTEEEEEEECCTTGGGSCHHHHHHHHH
T ss_pred EEEecCc----cchhHHHHHHHHHhc-CcEecCCccccC--------------CCceEEEEEecCccccCCHHHHHHHHH
Confidence 7776521 123567888888764 999976544311 224689998852 247888888888
Q ss_pred HHHHH
Q 012991 435 AVILL 439 (452)
Q Consensus 435 ~l~~~ 439 (452)
.|++.
T Consensus 354 ~l~~~ 358 (359)
T 3pj0_A 354 CLEKE 358 (359)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-22 Score=199.00 Aligned_cols=357 Identities=10% Similarity=0.025 Sum_probs=217.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+....... . ......+...++.++++++++.+ .++++||+||++|+..++.++.......-
T Consensus 64 ~lG~~~p~v~~A~~~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~~~~~~~~g 140 (460)
T 3gju_A 64 NVGYGRQKIADAIATQAKNLAYYH-A-YVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLIWYYNNVLG 140 (460)
T ss_dssp TTCBCCHHHHHHHHHHHHHHSCCC-C-CTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhccccc-c-ccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 356677889999998887642111 1 11223456788999999998764 67999999999999999987632110000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHH---------hcCcEEEEEeCCCC--CCC-------hHHH-HHHHHHHHhccccC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVT---------RAGGSVVEVQLPFP--LAS-------EEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~---------~~g~~v~~~~~~~~--~~~-------~~~~-~~~l~~~i~~~~~~ 187 (452)
..++++|++.++.|++.......+.. .....+..++.+.. .++ .... +++|++++++..
T Consensus 141 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~-- 218 (460)
T 3gju_A 141 RPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG-- 218 (460)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC--
Confidence 03468999999999876544432200 00113455543211 011 1122 688888886321
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++++ +|-.. .+.....+|++++| |++.|+
T Consensus 219 ~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~gG 295 (460)
T 3gju_A 219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDV-LLVADEVVTGFGRLGTMFGSDHYGIKPDLITIA--KGLTSA 295 (460)
T ss_dssp GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTT
T ss_pred CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcccccchHhhcCCCCCeeeee--hhhcCC
Confidence 257899999999999998766 8999999999999 899999987 43221 22223357877655 987664
Q ss_pred -CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 259 -PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 259 -~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
..+|++++++++++. +....... .. .....+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.
T Consensus 296 ~~~lg~v~~~~~i~~~-~~~~~~~~---~~--~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~~~~ 364 (460)
T 3gju_A 296 YAPLSGVIVADRVWQV-LVQGSDKL---GS--LGHGWTYSAHPICVAAGVANLELIDE-----MDLVTNAGETGAYFRAE 364 (460)
T ss_dssp SSCCEEEEEEHHHHHH-HHHHHHHH---CS--CSCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECHHHHHH-Hhcccccc---cc--cccCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHH
Confidence 357999999887765 21000000 00 00000112233334444455555443 23456666677777777
Q ss_pred HHHHc-CCCcCCCcccccceEEEEcCCccccC-----ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 338 LANAW-GTSLGSPPEICAAMVMVGLPSRLRVM-----GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 338 L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
|.+.. ...........+.++++.+....... ......++.+.|.++ ||.+....
T Consensus 365 l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------------- 424 (460)
T 3gju_A 365 LAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP------------------- 424 (460)
T ss_dssp HHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS-------------------
T ss_pred HHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC-------------------
Confidence 64431 22222122233667777664211000 011256788888775 99886422
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++||+++...|++++++++++|++++++
T Consensus 425 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 425 QGDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1369999998888999999999999999875
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=203.38 Aligned_cols=345 Identities=12% Similarity=0.116 Sum_probs=217.4
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
+..++.+.+++.+.+... .+... ....+...+++++++++++.+ .++|++|+||++|+..++.++. ...
T Consensus 58 G~~~p~v~~a~~~~~~~~-~~~~~---~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~a~~~~~------~~~ 126 (433)
T 1zod_A 58 GHCHPEIVSVIGEYAGKL-DHLFS---EMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMAK------LVT 126 (433)
T ss_dssp CBTCHHHHHHHHHHHHHC-CCCCT---TCCCHHHHHHHHHHHHHSCTT-CCEEEEESCHHHHHHHHHHHHH------HHH
T ss_pred CCCCHHHHHHHHHHHHhC-ccccc---ccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHHH------Hhh
Confidence 445778999999887653 11111 112355678889999999875 6899999999999999998642 013
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHH-----hc---CcEEEEEeCCC----CCCC----hHHH-HHHHHHHHhccccCCCce
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVT-----RA---GGSVVEVQLPF----PLAS----EEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~-----~~---g~~v~~~~~~~----~~~~----~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
.+++|++.++.|++.......+.. .. ...+..++.+. +.++ .+.+ +++|++++++.. .+++
T Consensus 127 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~~ 204 (433)
T 1zod_A 127 GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS--SGNL 204 (433)
T ss_dssp TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHC--CSCE
T ss_pred CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcC--CCCe
Confidence 457999999988765443321100 00 01344443321 1111 1234 888999886320 1567
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCCCcE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
++|+++..+|++|...+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++ |++|+++++.++|
T Consensus 205 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig 281 (433)
T 1zod_A 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGM-LLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLA 281 (433)
T ss_dssp EEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCE
T ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC-EEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccCCCCee
Confidence 88888777788998766 9999999999999 899999998 54221 12223356766 4569876655589
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
++++++++++. +.... +. . ..+.+.+...+.+..++++.+.+ +.+.++++++++++.+.|.++.
T Consensus 282 ~~~~~~~~~~~-~~~~~----~~-----~-~~t~~~~~~~~~a~~aal~~~~~-----~~~~~~~~~~~~~l~~~l~~l~ 345 (433)
T 1zod_A 282 AIVTSAAIEER-AHELG----YL-----F-YTTHVSDPLPAAVGLRVLDVVQR-----DGLVARANVMGDRLRRGLLDLM 345 (433)
T ss_dssp EEEECHHHHHH-HHHTT----CC-----C-CCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHh-hccCC----CC-----C-CCCCCcCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHH
Confidence 99998877664 21100 00 0 00112233444455566666554 2356778888888888887752
Q ss_pred -CCCcCCCcccccceEEEEcCCccc--cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 343 -GTSLGSPPEICAAMVMVGLPSRLR--VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
.+.........+.++++.++.... ..+..+..++.+.|.+ .||.+..+..+ ..++++|++
T Consensus 346 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----------------~~~~~lRi~ 408 (433)
T 1zod_A 346 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLP----------------GMGGVFRIA 408 (433)
T ss_dssp HHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCT----------------TSCCEEEEC
T ss_pred HhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCC----------------CCCCEEEEE
Confidence 122111111236777887652100 0001346778888876 59998654322 123799999
Q ss_pred ccccCCHHHHHHHHHHHHHHHhc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++..+|++|+++++++|++++++
T Consensus 409 ~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 409 PPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHH
Confidence 98888999999999999998753
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=196.01 Aligned_cols=345 Identities=14% Similarity=0.123 Sum_probs=214.4
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.+.+++.+.+... . ...+.....+...++.++++++++.+..++++||+|||+|+..++..+. . .
T Consensus 75 lGh~~p~v~~A~~~~~~~~-~--~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~-~-----~ 145 (451)
T 3oks_A 75 VGNSAPKVVEAVRSQVGDF-T--HTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIAR-S-----H 145 (451)
T ss_dssp TCTTCHHHHHHHHHHHTTC-S--CCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHH-H-----H
T ss_pred cCCCCHHHHHHHHHHHHhc-c--cccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHH-H-----h
Confidence 4566888999998887542 1 1111223456678899999999975434799999999999999997652 1 1
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHh----------cCcEEEEEeCCCC-------CCCh--HHH-HHHHHHHHhccccC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTR----------AGGSVVEVQLPFP-------LASE--EEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~----------~g~~v~~~~~~~~-------~~~~--~~~-~~~l~~~i~~~~~~ 187 (452)
..+++|++.++.|++.......+... ....+..++.+.+ .+.+ ... ++.+++.+++.. .
T Consensus 146 ~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~-~ 224 (451)
T 3oks_A 146 THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQI-G 224 (451)
T ss_dssp HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHT-C
T ss_pred cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhc-C
Confidence 34579999999998765544332000 0114556644210 0100 111 444555554210 1
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++++|+++..+++.|.+.+ +++|.++|++||+ ++|+|++|+ +|.. ..+.....+|++++ +|++.++
T Consensus 225 ~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~--sK~l~~G 301 (451)
T 3oks_A 225 ADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDV-VFIADEVQTGFARTGAMFACEHEGIDPDLIVT--AKGIAGG 301 (451)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTT
T ss_pred CCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCC-EEEEEecccCCCccccchhhhhcCCCCCeeee--hhhhhCC
Confidence 256788888887777788876 9999999999999 899999986 3321 12222335777755 5987665
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|++++++++++. + .+.. .+ .+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|
T Consensus 302 ~~iG~v~~~~~~~~~-~-~~~~---~~--------~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L 363 (451)
T 3oks_A 302 LPLSAVTGRAEIMDS-P-HVSG---LG--------GTYGGNPIACAAALATIETIES-----EGLVARAQQIEKIMKDRL 363 (451)
T ss_dssp SSCEEEEEEHHHHTC-S-CTTS---BC--------CSSSSCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECHHHHhh-h-cCCC---cC--------CCCCCCHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHH
Confidence 558999999888775 2 2110 00 0112233333444445555443 245667777777777777
Q ss_pred HHHc-CCCcCCCcccccceEEEEcCCcc-ccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 339 ANAW-GTSLGSPPEICAAMVMVGLPSRL-RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.++. ...........+.++++.+.+.. ...+..+..++.+.|.++ ||.+..+.. .++++
T Consensus 364 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~------------------~~~~i 424 (451)
T 3oks_A 364 GRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAA-GVIVLSCGT------------------YGNVV 424 (451)
T ss_dssp HHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHT-TEECEEECT------------------TSCEE
T ss_pred HHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhC-CcEEecCCC------------------CCCEE
Confidence 6642 11111112223667777663100 001234567888888775 999865322 13689
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++...|++++++++++|++++++
T Consensus 425 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 425 RFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999888999999999999998864
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=200.95 Aligned_cols=350 Identities=9% Similarity=0.067 Sum_probs=220.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.|.+++.+.+...... .. ......+...++.++++++++.+ .++++|++||++|+..++..+.......-
T Consensus 68 ~lGh~~p~v~~A~~~~~~~~~~~-~~-~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a~~~~~~~g 144 (472)
T 3hmu_A 68 NIGYGRDELAEVAARQMRELPYY-NT-FFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMVRTYWQNKG 144 (472)
T ss_dssp TTCBCCHHHHHHHHHHHHHCSCC-CS-SSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhcccc-cc-ccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667788999999988653211 11 11223556788999999999764 57999999999999999987632110000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh--------cCcEEEEEeCCCCC--C---Ch---HHH-HHHHHHHHhccccCCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR--------AGGSVVEVQLPFPL--A---SE---EEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~--------~g~~v~~~~~~~~~--~---~~---~~~-~~~l~~~i~~~~~~~~ 189 (452)
..++++|++.++.|++.......+... ....+..++.++.. + +. ... +++|++.+++.. .+
T Consensus 145 ~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~ 222 (472)
T 3hmu_A 145 QPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELG--EN 222 (472)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC--GG
T ss_pred CCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcC--CC
Confidence 124679999999988765443221000 00134455432100 0 11 112 678888885321 25
Q ss_pred ceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-C
Q 012991 190 MIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-P 259 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~ 259 (452)
++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++++ +|-.. .+.....+|++++| |++.|+ .
T Consensus 223 ~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gi-llI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~ 299 (472)
T 3hmu_A 223 RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDI-LLIADEVICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYA 299 (472)
T ss_dssp GEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSS
T ss_pred CEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEccccCCcccCccchhHHhCCCCceeeec--hhhhcCCc
Confidence 6899999999999999887 9999999999999 899999987 43321 12223357888765 987664 3
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH-EQALKMARML 338 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~-~~~~~l~~~L 338 (452)
.+|++++++++++. +....+. .+. +.+.+..++.+..++++.+.+ +.+.++.+ ++.+++++.|
T Consensus 300 plG~v~~~~~i~~~-~~~~~~~--~~~--------t~~~np~a~aAa~aaL~~~~~-----~~~~~~~~~~~~~~l~~~L 363 (472)
T 3hmu_A 300 PIGGSIVCDEVAHV-IGKDEFN--HGY--------TYSGHPVAAAVALENLRILEE-----ENILDHVRNVAAPYLKEKW 363 (472)
T ss_dssp CCEEEEEEHHHHHH-HTTSCBC--CCC--------TTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHTHHHHHHHHH
T ss_pred ceEEEEECHHHHHh-cccCCcc--ccC--------CCCCCHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHH
Confidence 58999999888775 2101000 000 112223333444445555543 34577777 8888888888
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCC------hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMG------EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
.++............+.++.+.+........ ......+.+.|.++ ||.++..
T Consensus 364 ~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~--------------------- 421 (472)
T 3hmu_A 364 EALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFAN-NLIMRHV--------------------- 421 (472)
T ss_dssp HGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT-TBCCEEE---------------------
T ss_pred HHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHC-CcEEEec---------------------
Confidence 7653332222222346677777642100000 11256788888775 9988632
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|++++...|++|+++++++|+++++.
T Consensus 422 g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 422 GDRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 169999998888999999999999998864
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=210.80 Aligned_cols=382 Identities=12% Similarity=0.074 Sum_probs=219.2
Q ss_pred ccccCCCCCCCCCHHHHHhhhcc-------CCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Q 012991 13 HVSKKPKLTRCISEAEIRDEFSH-------HQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILES 85 (452)
Q Consensus 13 ~~~~~~~~~~~~~~~~ir~~~~~-------~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (452)
++.+.-.|+.++.+....+.... +..+..|+|..+..+. +.+.+++.+.+. .+.. .+.......++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~----~~~~--~y~~~~~~~~l 79 (467)
T 2oqx_A 7 FRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMM----RGDE--AYSGSRSYYAL 79 (467)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTT----SCCC--CSSSCHHHHHH
T ss_pred hheeeecccccccHHHHHHHHHHcCCCceeccCCCeeEecccCCCc-HHHHHHHHHHhc----cCcc--eeccCchhHHH
Confidence 44445555556665443332221 2233456665443333 447777766542 1111 23334567889
Q ss_pred HHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCC-----C----CEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 86 RAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR-----N----DTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 86 ~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~-----g----~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
+++++++++. +++++|+|||+|+.+++.++. ++ | |+|++. ..|...+... ....|.
T Consensus 80 ~~~la~~~~~---~~v~~t~~gt~A~~~al~~~~--------~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~---~~~~~~ 144 (467)
T 2oqx_A 80 AESVKNIFGY---QYTIPTHQGRGAEQIYIPVLI--------KKREQEKGLDRSKMVAFS-NYFFDTTQGH---SQINGC 144 (467)
T ss_dssp HHHHHHHHCC---SEEEEEC--CCSHHHHHHHHH--------HHHHHHHCCCTTTCEEEE-SSCCHHHHHH---HHHTTC
T ss_pred HHHHHHHhCc---CcEEEcCCcHHHHHHHHHHHh--------ccccccCCCCccceEEec-ccccccchhh---hhccCc
Confidence 9999999987 589999999999999999874 34 5 887776 5564433333 233466
Q ss_pred EEEEEeCCC--CCC----ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-ccccc---HHHHHHHHHHcCCCEEE
Q 012991 157 SVVEVQLPF--PLA----SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIP---VRKLVKICRDEGVDQVF 225 (452)
Q Consensus 157 ~v~~~~~~~--~~~----~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~i 225 (452)
.+....... +.+ ..+.+ +++|++++++.. .+++++|++++++|++ |.+++ +++|+++|++||+ ++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi-~li 221 (467)
T 2oqx_A 145 TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDI-PVV 221 (467)
T ss_dssp EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTC-CEE
T ss_pred ceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCC-EEE
Confidence 655432110 111 12334 899999996320 1478999999999997 87765 6789999999999 699
Q ss_pred Eeccccc-----------CCccccccc------cCccEEEEcCcccCcCCCCcEEEEEecC-ccccCC--CCCceeccCC
Q 012991 226 VDAAHAM-----------GSIKIDVKE------IGADFYVSNLHKWFFCPPSVAFLYCRKS-ILSSDM--HHPVVSHEFG 285 (452)
Q Consensus 226 vD~a~~~-----------g~~~~~~~~------~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~~~~l--~~~~~~~~~~ 285 (452)
+|++++. +....+... ..+|++++|+||+++.|.| |+++.+++ +++. + ..+... ++
T Consensus 222 ~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~-~~~~~~~~~--~~ 297 (467)
T 2oqx_A 222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDV-YTECRTLCV--VQ 297 (467)
T ss_dssp EECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHH-HHHHHHHHH--HT
T ss_pred EEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHH-HHHHHHhhh--cc
Confidence 9988765 222222211 2378889999998654545 77777766 3332 0 011100 01
Q ss_pred CCcccccccccccCccccccHHHHHHHH-HHhhcCH-HHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCC
Q 012991 286 NGLPIESAWIGTRDYSAQLVIPSAVTFV-SRFEGGI-DGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPS 363 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~g~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (452)
.+.. ..+.... .++. ++... .. .. +...++..++++++.+.|.++ ++++. +.. +.++++.++.
T Consensus 298 ~~~~----~~~~~~~---~~~~-al~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~--~~~~~~~~~~ 362 (467)
T 2oqx_A 298 EGFP----TYGGLEG---GAME-RLAVGLYD---GMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAG--GHAAFVDAGK 362 (467)
T ss_dssp TSSC----CCCCCCH---HHHH-HHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EEC--SSCEEEEHHH
T ss_pred CCcc----cccchhh---hHHH-HHHHhhHh---hhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCC--ceEEEEechh
Confidence 1000 0011111 1111 22221 22 11 123445577888999999887 77766 443 6677877631
Q ss_pred c-cccC-ChhhHHHHHHHH-hhhcceEeeecccC-CCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHH
Q 012991 364 R-LRVM-GEDDALRLRGHL-RVRFGVEVPIHYQA-PKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVIL 438 (452)
Q Consensus 364 ~-~~~~-~~~~~~~l~~~L-~~~~gI~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~ 438 (452)
. .+.. ...+...+.+.| .+ .||.+.++..+ .+... .... . .....+++|++++.. +|++||++++++|++
T Consensus 363 ~~~~~~~~~~~~~~l~~~L~~~-~gv~~~~~~~~~~~~~~--~~g~-~-~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~ 437 (467)
T 2oqx_A 363 LLPHIPADQFPAQALACELYKV-AGIRAVEIGSFLLGRDP--KTGK-Q-LPCPAELLRLTIPRATYTQTHMDFIIEAFKH 437 (467)
T ss_dssp HSTTSCGGGCHHHHHHHHHHHH-HCEECEEESHHHHCBCT--TTCS-B-CCCSCCEEEECCCTTTSCHHHHHHHHHHHHH
T ss_pred hcccCCcccccHHHHHHHHHHh-cCceecccccccccccc--cccc-c-ccCccCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0 0000 111255678888 55 59998652211 00000 0000 0 001237999999988 899999999999999
Q ss_pred HHhcc
Q 012991 439 LVEEG 443 (452)
Q Consensus 439 ~~~~~ 443 (452)
+++..
T Consensus 438 ~l~~~ 442 (467)
T 2oqx_A 438 VKENA 442 (467)
T ss_dssp HHHSG
T ss_pred HHhhh
Confidence 98753
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=199.53 Aligned_cols=286 Identities=14% Similarity=0.129 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHH-HHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE--ecChhHHHHHHHHHhhcccccCCCCC
Q 012991 53 KSVLADQQKWQL-KFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISL--VDNATTAAAIVLQQIGRGFTEGRFHR 129 (452)
Q Consensus 53 ~~v~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~ 129 (452)
..|++++.+... .....++..+.+. ....+++++.+++++|.+ ..+++ ++||++|+..++.++ +++
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~-~~~~~~Le~~lA~l~g~e--~alv~p~~~sGt~Ai~~al~al--------l~~ 100 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYD-DEGRDTLERVYATVFKTE--AALVRPQIISGTHAISTVLFGI--------LRP 100 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTT-CHHHHHHHHHHHHHHTCS--EEEEETTSCSHHHHHHHHHHHH--------CCT
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCC-hhHHHHHHHHHHHHhCCC--cEEEECCCccHHHHHHHHHHHh--------cCC
Confidence 346777666431 1111222222222 334788999999999995 44444 899999999999887 589
Q ss_pred CCEEEEeC-CcchhHHHHHH------HHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec---
Q 012991 130 NDTVLMLH-CAFQAVKKSIQ------AYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH--- 198 (452)
Q Consensus 130 g~~Vl~~~-~~~~s~~~~~~------~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~--- 198 (452)
||+|++++ +.|.+....+. ..+...|++++.+++ +.++.+ ++++++++ .+++++|++++
T Consensus 101 GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~----~~~g~~d~e~l~~ai------~~~tklV~i~~s~g 170 (409)
T 3jzl_A 101 DDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPL----LENGDVDFPRIAKKM------TPKTKMIGIQRSRG 170 (409)
T ss_dssp TCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCC----CTTSCCCHHHHHHHC------CTTEEEEEEECSCT
T ss_pred CCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCC----CCCCCcCHHHHHHhc------cCCCeEEEEECCCC
Confidence 99999998 89988654431 113556999999854 334444 89999999 57899999999
Q ss_pred -cCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCC--CcEEEEEecCcccc
Q 012991 199 -ITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPP--SVAFLYCRKSILSS 273 (452)
Q Consensus 199 -~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~--G~G~l~~~~~~~~~ 273 (452)
++||+|.+.|+++|+++|++ +|+ ++++|++++.+....+....++|++++|+||+++|+. ..|+++.++++++.
T Consensus 171 ~p~nptg~v~~l~~I~~la~~~~~~~-~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~ 249 (409)
T 3jzl_A 171 YADRPSFTIEKIKEMIVFVKNINPEV-IVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDL 249 (409)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHCTTC-EEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHH
T ss_pred CCCCCcCccccHHHHHHHHHhhCCCC-EEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHH
Confidence 99999999999999999999 999 8999999988764344445689999999999865531 13899999887775
Q ss_pred CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-c-
Q 012991 274 DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-E- 351 (452)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~- 351 (452)
+...... .+.+. ..+. ... ....+++-+.. ....+++..+++.++.+.|.++ ++++...+ +
T Consensus 250 -l~~~~~~--~~~g~-----~~g~-~~~---~~~~~l~gl~~----~~~r~~~~~~~a~~la~~L~~~-g~~v~p~~~~~ 312 (409)
T 3jzl_A 250 -CGYRLTT--PGIGR-----EAGA-SLY---SLLEMYQGFFL----APHVTAQAIKGARFTAAMLAEF-GVEADPVWDAP 312 (409)
T ss_dssp -HHHHHSC--TTTGG-----GCCC-CTT---CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSC
T ss_pred -HHHHhcc--ccccc-----cccc-cHH---HHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCC
Confidence 2110000 00000 0011 111 12223333332 3445667788899999999987 66663221 1
Q ss_pred cccceEEEEcCCccccCChhhHHHHHHHHhhh
Q 012991 352 ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR 383 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 383 (452)
....++.|.+. +.....++++.|...
T Consensus 313 ~~~~i~~i~l~------~~~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 313 RTDLIQSVSFH------NKEKMVAFAQAIQAA 338 (409)
T ss_dssp CSSSCCEEECS------CHHHHHHHHHHHHHT
T ss_pred CccEEEEEEeC------CHHHHHHHHHHHHhc
Confidence 11236777775 355677888998653
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=200.87 Aligned_cols=331 Identities=11% Similarity=0.045 Sum_probs=207.6
Q ss_pred CCCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCCC----CCcEE--EecCh
Q 012991 37 QHGVARINNGSF-G-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NADD----VGEIS--LVDNA 107 (452)
Q Consensus 37 ~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~----~~~i~--~t~g~ 107 (452)
...++.|..+.+ + ..|+.+.+++.+. .......|....+..++++.+++++ +... +++|. .|.||
T Consensus 40 ~~~~i~l~~g~~~d~~~~~~v~~a~~~a------~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g 113 (409)
T 4eu1_A 40 AKRKVNLSIGVYRDDADQPFVLECVKQA------TLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG 113 (409)
T ss_dssp CSSCEECCCSSCCCTTSCCCCCHHHHTC------CCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred CcCceeeeeeEEECCCCCEeecHHHHhc------CccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence 457899988875 3 3344466776654 1112223444455678999999976 5531 46774 59999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
++++..+...+. ...++||+|++++|.|.+....+ +..|.+++.+++.. ++.+.+ +++|++.+++.
T Consensus 114 ~ga~~~~~~~~~-----~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~~~-- 180 (409)
T 4eu1_A 114 TGALRIGGDLLN-----RFVANCNRIYGPDVGYPNHESIF----AKAGMELTPYSYYD--PATKGLNLAGMLECLDKA-- 180 (409)
T ss_dssp HHHHHHHHHHGG-----GTSSSCCEEEEESSCCTHHHHHH----HHTTCEEEEECCEE--TTTTEECHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHH-----HhcCCCCEEEEeCCCcHhHHHHH----HHcCCeEEEEEeec--CcCCcCcHHHHHHHHHhC--
Confidence 999988765432 13578999999999999876655 44699999995421 122333 89999998642
Q ss_pred CCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCcc------c---cc-cccCccEEEEcCcc
Q 012991 187 DGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSIK------I---DV-KEIGADFYVSNLHK 253 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~~------~---~~-~~~~~d~~~~s~~K 253 (452)
.++++++++++++||||.+++.+ +|+++|++||+ ++|+|++++..... . .+ ......+++.|++|
T Consensus 181 -~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 258 (409)
T 4eu1_A 181 -PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNH-IPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSK 258 (409)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTT
T ss_pred -CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCc-EEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcc
Confidence 24577888899999999999855 58999999999 89999997643321 1 11 11123467889999
Q ss_pred cCcCCCC--cEEE--EEe-cC----ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH---HHhhcCHH
Q 012991 254 WFFCPPS--VAFL--YCR-KS----ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV---SRFEGGID 321 (452)
Q Consensus 254 ~l~g~~G--~G~l--~~~-~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~g~~ 321 (452)
. +|++| +|++ ++. ++ ++.. + ... ......+++...+.++..+++.. .++....+
T Consensus 259 ~-~g~~G~riG~~~~v~~~~~~~~~l~~~-~-~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (409)
T 4eu1_A 259 N-FGLYGHRCGALHISTASAEEAKRLVSQ-L-ALL-----------IRPMYNNPPLYGAWVVSSILKDPQLTALWKKELK 324 (409)
T ss_dssp T-SSCGGGCCEEEEEECSSHHHHHHHHHH-H-HHH-----------HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred c-ccCccCCceEEEEEeCCHHHHHHHHHH-H-HHH-----------HhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6 66666 6886 443 44 3322 0 000 00011223333333344444321 00011357
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD 398 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~ 398 (452)
.++++++++++++.+.|.+++. +.+..++. +.++|..+ +. ++...|.+++||.+.+
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~--~~~~~~~~----------~~-~~~~~ll~~~gv~v~p-------- 383 (409)
T 4eu1_A 325 QMSSRIAEVRKRLVSELKACGSVHDWSHIERQV--GMMAYTGL----------TR-EQVELLRSEYHIYMTL-------- 383 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSC--SSEEECCC----------CH-HHHHHHHHHHCEECCT--------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceecCCc--eEEEEeCC----------CH-HHHHHHHHcCCEEEcC--------
Confidence 7888899999999999988621 44333332 44555332 23 3445555556999841
Q ss_pred CCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 399 GQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 399 ~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..|++++.. +.+|+++++++|++++
T Consensus 384 ----------------~~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 384 ----------------NGRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ----------------TCEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ----------------CCEEEEEec-CHhhHHHHHHHHHHHh
Confidence 138888754 5667999999999876
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-22 Score=196.12 Aligned_cols=326 Identities=12% Similarity=0.110 Sum_probs=206.4
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.|.+++.+.+.... . + ....+...+++++++++++ + .++++|++|||+|+..++..+. ..
T Consensus 69 lG~~~p~v~~a~~~~~~~~~----~-~-~~~~~~~~~l~~~la~~~~-~-~~~v~~~~sGsea~~~ai~~a~------~~ 134 (434)
T 3l44_A 69 TGHAHPHITKAITTAAENGV----L-Y-GTPTALEVKFAKMLKEAMP-A-LDKVRFVNSGTEAVMTTIRVAR------AY 134 (434)
T ss_dssp SCBTCHHHHHHHHHHHHHCS----C-C-SSCCHHHHHHHHHHHHHCT-T-CSEEEEESSHHHHHHHHHHHHH------HH
T ss_pred cCCCCHHHHHHHHHHHHhCc----C-C-CCCCHHHHHHHHHHHHhCC-C-CCEEEEeCchHHHHHHHHHHHH------Hh
Confidence 34567889999998876521 1 1 1134566788899999987 3 5899999999999999998652 11
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCc-------------------EEEEEeCCCCCCChHHHHHHHHHHHhccccCC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGG-------------------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDG 188 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-------------------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 188 (452)
.++++|++.++.|++........ .|. .+..+ +.++ +++|++++++. .
T Consensus 135 ~~~~~vi~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~le~~l~~~---~ 200 (434)
T 3l44_A 135 TGRTKIMKFAGCYHGHSDLVLVA---AGSGPSTLGTPDSAGVPQSIAQEVITV----PFNN----VETLKEALDKW---G 200 (434)
T ss_dssp HCCCEEEEETTCCCCSSGGGGBC----------CCCBSSTTCCHHHHTTEEEE----CTTC----HHHHHHHHHHH---G
T ss_pred hCCCEEEEEcCccCCCcHHHHhh---cCCcccccCCCCcCCCCCcCCCceEec----Cccc----HHHHHHHHHhC---C
Confidence 36789999999887643322110 111 22233 2222 67888888642 2
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc---CCc-cccccccCccEEEEcCcccCcCCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM---GSI-KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~---g~~-~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+. |.. ..+.....+|++++ +|.+.++..
T Consensus 201 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~i-llI~DEv~~g~~~g~~~~~~~~~~~~di~t~--sK~~~~G~~ 277 (434)
T 3l44_A 201 HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGA-LVIYDEVITAFRFMYGGAQDLLGVTPDLTAL--GKVIGGGLP 277 (434)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTC-EEEEECTTTTTTSSSSCHHHHHTCCCSEEEE--EGGGGTTSS
T ss_pred CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccceeccccHHHHHcCCCCCeeeh--hhhhcCCcC
Confidence 57889999988888999887 9999999999999 8999999872 211 11222334677655 498766666
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|++++++++++. +. +......+ .+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|.+
T Consensus 278 iG~~~~~~~i~~~-~~-~~~~~~~~--------~t~~~~~~a~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 278 IGAYGGKKEIMEQ-VA-PLGPAYQA--------GTMAGNPASMASGIACLEVLQQ-----EGLYEKLDELGATLEKGILE 342 (434)
T ss_dssp CEEEEECHHHHTT-BT-TTSSBCCC--------CTTTTCHHHHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEcHHHHHh-hc-cCCCcccC--------CCCCcCHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHHH
Confidence 8999898888775 21 11000000 0112233333333444444331 45677778888888888876
Q ss_pred HcC-CCcCCCcccccceEEEEcCCcccc-------CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 341 AWG-TSLGSPPEICAAMVMVGLPSRLRV-------MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 341 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
+.. ..+.......+.++++.+...... .+.....++.+.|.++ ||.+..+ .
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~--------------------~ 401 (434)
T 3l44_A 343 QAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPS--------------------K 401 (434)
T ss_dssp HHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSS--------------------T
T ss_pred HHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeec--------------------C
Confidence 521 112111223366777766321000 0122346788888775 9998632 1
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.+|+++ ..|++|+++++++|+++++.
T Consensus 402 ~~~~rl~~--~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 402 YEAWFLTT--EHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp TCCEECCT--TCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEec--ccCHHHHHHHHHHHHHHHHH
Confidence 24689875 45999999999999999865
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=196.93 Aligned_cols=354 Identities=13% Similarity=0.086 Sum_probs=220.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.|.+++.+.+.... ..... ....+...++.++++++++.+ .+.++|++||++|+..++..+...+...-
T Consensus 67 ~lGh~~p~v~~A~~~~l~~~~-~~~~~--~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a~~~~~~~g 142 (476)
T 3i5t_A 67 QVGYGRREIVDAMAHQAMVLP-YASPW--YMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFSEFYNNVLG 142 (476)
T ss_dssp TTCBCCHHHHHHHHHHHHHCC-CCCTT--TCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhcc-CcccC--ccCCHHHHHHHHHHHhcCCCC-cCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 356678889999999886531 11111 234566788999999999764 57999999999999999997642211100
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh------c---CcEEEEEeCCCCC---C-Ch---HHH-HHHHHHHHhccccCCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR------A---GGSVVEVQLPFPL---A-SE---EEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~------~---g~~v~~~~~~~~~---~-~~---~~~-~~~l~~~i~~~~~~~~ 189 (452)
...+++|++.++.|++.......+... . ...+..++.+... + +. ... +++|++.+++.. .+
T Consensus 143 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~ 220 (476)
T 3i5t_A 143 RPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PD 220 (476)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GG
T ss_pred CCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CC
Confidence 133579999999998765443221000 0 0123344332110 1 11 111 678888886321 25
Q ss_pred ceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----cc-ccccCccEEEEcCcccCcCC-
Q 012991 190 MIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----ID-VKEIGADFYVSNLHKWFFCP- 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~-~~~~~~d~~~~s~~K~l~g~- 258 (452)
++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+ +|-.. .. .....+|++++| |++.++
T Consensus 221 ~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gi-llI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G~ 297 (476)
T 3i5t_A 221 TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDI-LYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVTSGY 297 (476)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTTS
T ss_pred CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEecccCCccccCceeeecccCCCcchhhhh--hhhcCCC
Confidence 7899999999999998665 8999999999999 899999987 43221 22 333457888765 987765
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|++++++++++. +. +... ..+ ......+.+.+..++.+..++++.+.+ +.+.++.+++.+++++.|
T Consensus 298 ~plg~v~~~~~i~~~-~~-~~~~---~~~-~~~~~~t~~~np~a~aAa~aaL~~~~~-----~~~~~~~~~~~~~l~~~L 366 (476)
T 3i5t_A 298 VPLGGLAISEAVLAR-IS-GENA---KGS-WFTNGYTYSNQPVACAAALANIELMER-----EGIVDQAREMADYFAAAL 366 (476)
T ss_dssp SCCEEEEECHHHHHT-TS-GGGC---TTC-EECCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECHHHHHH-Hh-cCCc---ccc-cccccCCCCcCHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHH
Confidence 457999999888775 21 1100 000 000000112233333444445555442 456778888899999998
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCCh-----hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE-----DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.++............+.++++.+.+....... .....+.+.|.++ ||.+... +
T Consensus 367 ~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~---------------------g 424 (476)
T 3i5t_A 367 ASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GLIVRPL---------------------G 424 (476)
T ss_dssp HTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHT-TEECEEE---------------------T
T ss_pred HHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHC-CCEEEec---------------------C
Confidence 86532222222223466777766421000000 0255788888775 9998631 2
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++||+++...|++++++++++|+++++.
T Consensus 425 ~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 425 DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 69999988888999999999999999864
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=198.33 Aligned_cols=259 Identities=16% Similarity=0.160 Sum_probs=182.8
Q ss_pred HHHHHHHHHHhHhCCCCCCcEEE--ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeC-CcchhHHHHH-------HHH
Q 012991 81 GILESRAAVKDLINADDVGEISL--VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLH-CAFQAVKKSI-------QAY 150 (452)
Q Consensus 81 ~~~~~~~~la~~~~~~~~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~-------~~~ 150 (452)
..+++++.+++++|++ ..+++ ++||++|+..++.++ +++||+|++++ +.|.+....+ ...
T Consensus 74 ~~~~Le~~lA~l~g~e--~alv~p~~~sGt~Ai~~al~al--------l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~ 143 (427)
T 3i16_A 74 GRDSLDAVYARVFNTE--SALVRPHFVNGTHALGAALFGN--------LRPGNTMLSVCGEPYDTLHDVIGITENSNMGS 143 (427)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEETTCCSHHHHHHHHHHHH--------CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCC
T ss_pred HHHHHHHHHHHHhCCc--ceEEeCCCccHHHHHHHHHHHH--------hCCCCEEEEeCCCccHHHHHHHhccccchHHH
Confidence 4788999999999995 44554 899999999999987 58999999998 8998765444 011
Q ss_pred HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec----cCCCCcccccHHHHHHHHHH--cCCCE
Q 012991 151 VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH----ITSMPCVVIPVRKLVKICRD--EGVDQ 223 (452)
Q Consensus 151 a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~~ 223 (452)
+...|++++.+++ +.++.+ ++++++++++ .+++++|++++ ++||+|.+.|+++|+++|++ +|+ +
T Consensus 144 l~~~G~~~~~v~~----~~~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~-~ 214 (427)
T 3i16_A 144 LKEFGINYKQVDL----KEDGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDI-I 214 (427)
T ss_dssp TGGGTCEEEECCC----CTTSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTS-E
T ss_pred HHHcCCEEEEecC----ccCCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCC-E
Confidence 3556999999843 334444 8999999952 26899999999 99999999999999999999 999 7
Q ss_pred EEEecccccCCccccccccCccEEEEcCcccCcC---CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCc
Q 012991 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFC---PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300 (452)
Q Consensus 224 ~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g---~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (452)
+++|++++.+.........++|+++.|+||+++| +.| |+++.++++++. +...... .+. +....
T Consensus 215 livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~g-G~i~~~~~li~~-l~~~~~~--~~~---------g~~~~ 281 (427)
T 3i16_A 215 CFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTG-GYLAGTKDCIEK-TSYRLTV--PGI---------GGECG 281 (427)
T ss_dssp EEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSC-EEEEECHHHHHH-HHHHHSC--TTT---------GGGCC
T ss_pred EEEECCCccccccCCccccCCeEEEecCcccCCCCCCceE-EEEEECHHHHHH-HHHhccc--Ccc---------CccCC
Confidence 9999999887643444456899999999998655 444 999999888875 2110000 000 11111
Q ss_pred cccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHH
Q 012991 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRG 378 (452)
Q Consensus 301 ~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (452)
....+...+++-+.. ....+++..+++.++.+.|+++ ++++...+. ....++.|.+. +.....++++
T Consensus 282 ~~~~~a~~~l~gl~~----~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~~i~~i~l~------~~~~~~~f~~ 350 (427)
T 3i16_A 282 STFGVVRSMYQGLFL----APHISMEALKGAILCSRIMELA-GFEVMPKYDEKRSDIIQSIKFN------DKDKLIEFCK 350 (427)
T ss_dssp CCTTCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCEEEECS------SHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCccEEEEEEEC------CHHHHHHHHH
Confidence 111113334444442 3455677888999999999987 556632211 11227777775 3456778888
Q ss_pred HHhh
Q 012991 379 HLRV 382 (452)
Q Consensus 379 ~L~~ 382 (452)
.|..
T Consensus 351 ~l~~ 354 (427)
T 3i16_A 351 GIQT 354 (427)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8864
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=195.88 Aligned_cols=344 Identities=13% Similarity=0.041 Sum_probs=213.6
Q ss_pred HHHHhhhcc-CCCCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCC--
Q 012991 27 AEIRDEFSH-HQHGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NAD-- 96 (452)
Q Consensus 27 ~~ir~~~~~-~~~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-- 96 (452)
-.+.+.+.. ..+++|+|..|.+ .+.|+.+.++.. ..... . ....|....+..++|+++++++ +..
T Consensus 17 ~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~-~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~ 91 (405)
T 3k7y_A 17 LKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN-Y---KEKPYLLGNGTEDFSTLTQNLIFGNNSK 91 (405)
T ss_dssp HHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH-C---CCCCCCTTSSCHHHHHHHHHHHHCSSCT
T ss_pred HHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC-C---CCCCCCCCCCcHHHHHHHHHHHcCCCCc
Confidence 344444443 2467899998852 245677888776 33111 1 1123444566788888888876 321
Q ss_pred --CCC--cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 97 --DVG--EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 97 --~~~--~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
+++ ++++|+|+++|+.+++.++. .+.+ |+|++++|.|++....+ +..|.+++.+++.. +++..
T Consensus 92 ~~~~~~i~i~~t~G~~~al~~~~~~l~------~~~~-d~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~ 158 (405)
T 3k7y_A 92 YIEDKKICTIQCIGGTGAIFVLLEFLK------MLNV-ETLYVTNPPYINHVNMI----ESRGFNLKYINFFD--YNLID 158 (405)
T ss_dssp TTTTTCEEEEEEEHHHHHHHHHHHHHH------TTTC-CEEEEESSCCHHHHHHH----HTTTCEEEEECCEE--TTTTE
T ss_pred cccccceEEEEcCchHHHHHHHHHHHH------hcCC-CEEEEeCCCCHhHHHHH----HHcCCeEEEEeccc--cccCC
Confidence 134 35899999999999998874 2237 99999999999876555 55699999995421 11233
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEecc-CCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCcc--------c-c
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSIK--------I-D 238 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~-~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~~--------~-~ 238 (452)
+ ++.|++.+++ .+++++|+++.+ +||||.+++. ++|+++|++|++ ++|+|+++..-... + .
T Consensus 159 ~d~~~l~~~l~~----~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~-~vi~De~Y~~l~~~~~~~~~~~~~~ 233 (405)
T 3k7y_A 159 INYDLFLNDLRN----IPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKH-VIIFDIAYQGFGHTNLEEDVLLIRK 233 (405)
T ss_dssp ECHHHHHHHHHH----SCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCC-EEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred cCHHHHHHHHHh----CCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCe-EEEEecCcccccCCCcccchHHHHH
Confidence 4 8999999864 245678877655 8999999984 467889999999 79999997632211 0 0
Q ss_pred c-cccCccEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 239 V-KEIGADFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 239 ~-~~~~~d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
+ ....--+++.|++|. ++++| +|++++ +++++.. +...... ........++...+.++..+++.
T Consensus 234 ~~~~~~~~i~~~S~SK~-~~l~GlRiG~~~~~~~~~~~~~~-~~~~l~~--------~~~~~~~~~~~~~q~~~~~~l~~ 303 (405)
T 3k7y_A 234 FEEKNIAFSVCQSFSKN-MSLYGERAGALHIVCKNQEEKKI-VFNNLCF--------IVRKFYSSPVIHTNRILCQLLNN 303 (405)
T ss_dssp HHTTTCCEEEEEECTTT-SCCTTTTEEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCHHHHHHHHHHHHC
T ss_pred HHhcCCcEEEEeeCCcc-CCCccccceEEEEEeCCHHHHHH-HHHHHHH--------HHhcccCCCcHHHHHHHHHHhCC
Confidence 1 111234677899996 77666 788764 3333322 1000000 00000012222333333333321
Q ss_pred H---HHhhcCHHHHHHHHHHHHHHHHHHHH----HHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhh
Q 012991 313 V---SRFEGGIDGIMQRNHEQALKMARMLA----NAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRV 382 (452)
Q Consensus 313 ~---~~~~~g~~~~~~~~~~~~~~l~~~L~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 382 (452)
- ..+...++.++++++++++.+.+.|. ++.. +.+..+++ +.++|+.++ . +.++.| +
T Consensus 304 ~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~g--g~f~~~~l~----------~-~~~~~L-~ 369 (405)
T 3k7y_A 304 QNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQR--GLFSFVPLL----------A-KIAEHL-K 369 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCC--SSEEECGGG----------G-GGTTTT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCc--eEEEecCCC----------H-HHHHHH-H
Confidence 0 11111356677888999999999998 7631 45555544 667776553 1 334667 5
Q ss_pred hcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 383 RFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 383 ~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++||.+.+ .+ |||++.. ++++|+.++++|+++++.
T Consensus 370 ~~gV~v~p----------------------~~--Ris~a~~-~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 370 THHIYIIN----------------------NG--RINVSGI-TKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp TTTEECCT----------------------TS--EEEGGGC-CTTHHHHHHHHHHHHHHC
T ss_pred HCCEeecC----------------------CC--eEEEecc-CHHHHHHHHHHHHHHHhh
Confidence 67999841 12 9999753 678899999999998763
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-23 Score=208.43 Aligned_cols=358 Identities=11% Similarity=0.054 Sum_probs=206.0
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH-----hC--C-C-CCCcEEEecChhHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL-----IN--A-D-DVGEISLVDNATTA 110 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-----~~--~-~-~~~~i~~t~g~t~a 110 (452)
++.|..+.++..++.+.+++.+.... .. |....+..++++.+++. ++ . . ++++|++|+|++++
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~~-~~-------Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~ea 177 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGILG-CN-------YPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAA 177 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHT-CS-------CCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhhc-CC-------CCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHH
Confidence 56676666666666677766654421 11 11122223344443332 22 2 1 25799999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++... ..+++||+|++++|.|++....... ...|.+++.++.+. +....+ +++|++.+ ..
T Consensus 178 l~~~~~~l~~~---~l~~~Gd~Vlv~~P~y~~~~~~~~~--~~~g~~~~~v~~~~--~~~~~~d~~~l~~~~------~~ 244 (546)
T 2zy4_A 178 MAYIFESLKLN---GLLKAGDKVAIGMPVFTPYIEIPEL--AQYALEEVAINADP--SLNWQYPDSELDKLK------DP 244 (546)
T ss_dssp HHHHHHHHHHT---TSSCTTCEEEEEESCCHHHHHHHHS--TTSCCEEEEEECBG--GGTTBCCHHHHGGGG------ST
T ss_pred HHHHHHHhhhh---hcCCCCCEEEEeCCCCccHHHHHHH--cCCCcEEEEEecCc--ccCCCCCHHHHHHhh------CC
Confidence 99999874210 0257899999999999987554321 23478888885421 111123 78888776 57
Q ss_pred ceEEEEEeccCCCCcccccH---HHHHHHH--HHcCCCEEEEecccccCCc-cccccc--cCccEEEEcCcccCcCCCC-
Q 012991 190 MIRLAIIDHITSMPCVVIPV---RKLVKIC--RDEGVDQVFVDAAHAMGSI-KIDVKE--IGADFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l---~~i~~l~--~~~~~~~~ivD~a~~~g~~-~~~~~~--~~~d~~~~s~~K~l~g~~G- 260 (452)
++++|++++++||||.+++. ++|+++| +++|+ ++|+|++++.... ...+.. .+.++++.|++|+ +|.+|
T Consensus 245 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~-~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~-~g~~Gl 322 (546)
T 2zy4_A 245 AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDL-MILTDDVYGTFADDFQSLFAICPENTLLVYSFSKY-FGATGW 322 (546)
T ss_dssp TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTC-EEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTT-TTCGGG
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCc-EEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccc-cCCCCc
Confidence 89999999999999999985 4578888 77899 8999999875432 111111 1356889999996 67667
Q ss_pred -cEEEEEecC-ccccCCCCCc-------eeccCC-CCc-cc---------------ccccccccCccccccHH--HHHHH
Q 012991 261 -VAFLYCRKS-ILSSDMHHPV-------VSHEFG-NGL-PI---------------ESAWIGTRDYSAQLVIP--SAVTF 312 (452)
Q Consensus 261 -~G~l~~~~~-~~~~~l~~~~-------~~~~~~-~~~-~~---------------~~~~~~~~~~~~~~~~~--~al~~ 312 (452)
+|+++++++ +++. +.... +...+. ... +. ........+...+.++. +...+
T Consensus 323 RiG~~~~~~~~l~~~-l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~al 401 (546)
T 2zy4_A 323 RLGVVAAHQQNVFDL-ALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFAL 401 (546)
T ss_dssp CEEEEEEESSCHHHH-HHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHH-HHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHH
Confidence 799999876 5443 10000 000000 000 00 00001112222222211 01123
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCcccc--CC--------hh-hHHHHHHHHh
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRV--MG--------ED-DALRLRGHLR 381 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~-~~~~l~~~L~ 381 (452)
+.+.+.-.+.+++.++++.+.+.+.|. . ++.+..+. .+.++|+.++.+... .. .. +...+.+.|.
T Consensus 402 l~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~ 477 (546)
T 2zy4_A 402 MDEADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENA--VDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD 477 (546)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTB--CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCC--eeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHH
Confidence 221101245556666666666666653 2 22222222 366778887421000 00 01 2334556665
Q ss_pred hhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 382 VRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 382 ~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+ .||.+.++..+. ...+++||++.. .+++++++++++|++++++
T Consensus 478 ~-~gV~v~pG~~F~---------------~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 478 E-TGIVLLPGRGFG---------------SNRPSGRASLAN-LNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp H-HSCCCEESSCTT---------------CSSCEEEEESSS-SCHHHHHHHHHHHHHHHHH
T ss_pred H-CCEEEeCccccC---------------CCCCeEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence 5 599998776652 235789999973 4788999999999888753
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-21 Score=190.75 Aligned_cols=329 Identities=11% Similarity=0.040 Sum_probs=205.2
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.+.+++.+.+.... .+.+ ..+...++.++++++++ + .++++|++||++|+..++.... . .
T Consensus 66 lG~~~p~v~~a~~~~~~~~~-----~~~~-~~~~~~~la~~l~~~~~-~-~~~v~~~~ggsea~~~al~~a~-~-----~ 131 (427)
T 3fq8_A 66 CGHAHPEVIEALKVAMEKGT-----SFGA-PCALENVLAEMVNDAVP-S-IEMVRFVNSGTEACMAVLRIMR-A-----Y 131 (427)
T ss_dssp TCBTCHHHHHHHHHHHTTCS-----CCSS-CCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHH-H-----H
T ss_pred cCCCCHHHHHHHHHHHHhCC-----CcCC-CCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHH-H-----h
Confidence 34568889999988765321 1122 45677889999999997 3 5899999999999999996431 1 2
Q ss_pred CCCCEEEEeCCcchhHHHHHHHH----HHh------cC------cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAY----VTR------AG------GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~----a~~------~g------~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
..+++|++.++.|++........ ... .| ..+..++ .++ +++|++.+++. .+++
T Consensus 132 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d----~~~le~~l~~~---~~~~ 200 (427)
T 3fq8_A 132 TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP----YND----LEAVKALFAEN---PGEI 200 (427)
T ss_dssp HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEE----TTC----HHHHHHHHHHS---TTTE
T ss_pred hCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecC----CCC----HHHHHHHHHhC---CCCE
Confidence 34578999888887632211000 000 01 1133342 222 68888888643 3578
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc---CCc-cccccccCccEEEEcCcccCcCCCCcEE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM---GSI-KIDVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~---g~~-~~~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+. |.. ..+.....+|++++| |++.++..+|+
T Consensus 201 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~~G~ 277 (427)
T 3fq8_A 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDA-LLVFDEVITGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGA 277 (427)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTC-EEEEECTTTBTTTBTTHHHHHTTCCCSEEEEC--GGGGTTSSCEE
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccccccCcchhhHhcCCCCChhhhh--hhhhCCcceEE
Confidence 99999999999999998 9999999999999 8999999972 111 112223356776555 98765444899
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
+++++++++. +. +......+ .+.+.+...+.+..++++.+.+ +.+.++++++.+++++.|.++..
T Consensus 278 ~~~~~~~~~~-~~-~~~~~~~~--------~t~~~~~~~~aa~~aal~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~ 342 (427)
T 3fq8_A 278 YGGKREIMQL-VA-PAGPMYQA--------GTLSGNPLAMTAGIKTLELLRQ-----PGTYEYLDQITKRLSDGLLAIAQ 342 (427)
T ss_dssp EEECHHHHTT-BT-TTSSBCCC--------CTTTTCHHHHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcHHHHHh-hc-cCCCcccc--------CCCCcCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888775 21 11000000 0011233333333344444331 45677788888888888876521
Q ss_pred -CCcCCCcccccceEEEEcCCccc-------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 344 -TSLGSPPEICAAMVMVGLPSRLR-------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 344 -~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
..+.......+.++++.+++... ..+.....++.+.|.++ ||.+..+. ..
T Consensus 343 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~--------------------~~- 400 (427)
T 3fq8_A 343 ETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQ--------------------FE- 400 (427)
T ss_dssp HTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST--------------------TS-
T ss_pred hCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCC--------------------CC-
Confidence 12222222346788888753100 01122356788888765 99985321 12
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++..+|++|+++++++|++++++
T Consensus 401 -r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 401 -AGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp -CEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 44445557999999999999998753
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-20 Score=183.22 Aligned_cols=336 Identities=15% Similarity=0.079 Sum_probs=210.6
Q ss_pred CCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHH
Q 012991 69 QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQ 148 (452)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~ 148 (452)
++....+.....+.+.+...+.+++|.++....++++|+|.+..+++.+.+|.. ..+++.|++++..|.|+.+++.
T Consensus 87 ~~~~~~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~----~~~~~~viv~r~aHkSv~kAl~ 162 (450)
T 3bc8_A 87 QPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----RPKAKYIIWPRIDQKSCFKSMV 162 (450)
T ss_dssp CCSBHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH----CTTCCEEEEECCCCHHHHHHHH
T ss_pred CccccCCcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh----hcCCCEEEEECCcHHHHHHHHH
Confidence 343333344567788899999999999855567999999855555555554432 1236899999999999988876
Q ss_pred HHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEe
Q 012991 149 AYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 149 ~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD 227 (452)
. .|++++++++.. .++...+ ++.|+++|++.. ...+.+|+.+..++.+|.+.|+++|+++|++||+ ++|||
T Consensus 163 l----~Gl~p~~v~~~~-~~~~~~id~~~le~aI~~~~--~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi-~l~VD 234 (450)
T 3bc8_A 163 T----AGFEPVVIENVL-EGDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICANYDI-PHVVN 234 (450)
T ss_dssp H----TTCEEEEECCEE-ETTEEECCHHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-CEEEE
T ss_pred H----cCCeeEEEEeee-cCccCCcCHHHHHHHHHhcC--CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCC-eEEEE
Confidence 5 599999996421 1234455 999999998642 1245556665445446689999999999999999 59999
Q ss_pred cccccCCccc---ccc--c-cCccEEEEcCcccCcCCCCcEEEEEec-CccccCCCCCceeccCCCCcccccccccccCc
Q 012991 228 AAHAMGSIKI---DVK--E-IGADFYVSNLHKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300 (452)
Q Consensus 228 ~a~~~g~~~~---~~~--~-~~~d~~~~s~~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (452)
+||+.-.... ... . -++|+++.|.|||++.|.|.+++++++ +.+.. + ...+.+. .+++|
T Consensus 235 ~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~-~-----~~~~~g~------~s~Sp-- 300 (450)
T 3bc8_A 235 NAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD-I-----SKMYPGR------ASASP-- 300 (450)
T ss_dssp CTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHH-H-----HHHSCSC------BCSHH--
T ss_pred CCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHH-H-----HHHhhcC------CcccH--
Confidence 9998633211 111 1 269999999999999999989988863 33332 1 0011110 01122
Q ss_pred cccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHH
Q 012991 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLR 377 (452)
Q Consensus 301 ~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (452)
.+.++..+..... +|+.++.++..++++++++.|.+++ +.++...+.. ..-..+.+.. +......+..++.
T Consensus 301 --sL~l~~~l~~~G~--~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~-~~~~~~~l~~-~~~~~~~D~tkl~ 374 (450)
T 3bc8_A 301 --SLDVLITLLSLGC--SGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN-PISLAMTLKT-IDGHHDKAVTQLG 374 (450)
T ss_dssp --HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTC-SSEEEEECTT-TSSSSSCHHHHHH
T ss_pred --HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccC-CCcceeeccc-ccccccCCCceeE
Confidence 1223333322222 2566777777889999999999888 8877665432 1112233321 0111134556666
Q ss_pred HHHhhh--cceEeee--------cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 378 GHLRVR--FGVEVPI--------HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 378 ~~L~~~--~gI~v~~--------~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
-.+... .|..+.. +.....-|.+.. .....++-+.++..++++|+++++++|+++.+..
T Consensus 375 i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E-------~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~ 443 (450)
T 3bc8_A 375 SMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHAD-------NYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 443 (450)
T ss_dssp HHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSS-------CCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCccceeeecccccchhHHHHHHcCCeee-------cCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 666432 1333320 000000011100 2345678888888899999999999999997653
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-23 Score=205.07 Aligned_cols=335 Identities=10% Similarity=-0.015 Sum_probs=213.0
Q ss_pred CCCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhH-H---HHHHHHHHHhHhC------CCCCCcEEEec
Q 012991 37 QHGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRK-G---ILESRAAVKDLIN------ADDVGEISLVD 105 (452)
Q Consensus 37 ~~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~la~~~~------~~~~~~i~~t~ 105 (452)
...++.|+.+.+.. .|+.+.+++.+.+. ..+...+.|.... + ..++|++++++++ ++ +++|++|+
T Consensus 55 ~~~~i~l~~g~~~~~~~~~v~~a~~~~l~---~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~-~~~iv~t~ 130 (427)
T 2hox_A 55 QGCSADVASGDGLFLEEYWKQHKEASAVL---VSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAK-DRYIVFGV 130 (427)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHHCEE---ECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCT-TCEEEEES
T ss_pred CCceEEecCcCCCCCCCHHHHHhHHhhhh---cCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCC-CCEEEEeC
Confidence 34577888776653 33455556554431 1111111122222 3 5778888888886 43 68999999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGK 185 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~ 185 (452)
|+++++.+++.++.+......+++||+|+++.|.|++....+ +..|.+++.+.+ + ++.|++++
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~----d-----~~~l~~~~---- 193 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT----KYFDKKGYVWAG----N-----AANYVNVS---- 193 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH----HHSCBTTEEEEE----E-----GGGGTTCS----
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHH----HHcCCeeeeecC----C-----HHHHHHhh----
Confidence 999999999998721000000478999999999998876555 445777665432 2 46666666
Q ss_pred cCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-ccccccCccEEEEcCcccCcCCCC--cE
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK-IDVKEIGADFYVSNLHKWFFCPPS--VA 262 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-~~~~~~~~d~~~~s~~K~l~g~~G--~G 262 (452)
.+++++|++++|+||||.+++ +. ++ ++ ..+.|+++...... .++. .+.++++.|+||. +|++| +|
T Consensus 194 --~~~~k~v~l~~p~NPtG~~~~-~~----l~--~~-~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~-~g~~G~RiG 261 (427)
T 2hox_A 194 --NPEQYIEMVTSPNNPEGLLRH-AV----IK--GC-KSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKF-TGHSGSRFG 261 (427)
T ss_dssp --CGGGEEEEEESSCTTTCCCCC-CS----ST--TC-EEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHH-TSCGGGCCE
T ss_pred --cCCceEEEEcCCCCCcccccH-HH----Hc--CC-CEEEeecccCCCCCccccC-CCceEEEEeChhc-CCCCCceEE
Confidence 457899999999999999999 42 22 67 58889876432211 1222 4578999999995 77777 89
Q ss_pred EEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHH--------hhcCHHHHHHHHHHHHHH
Q 012991 263 FLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR--------FEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 263 ~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~g~~~~~~~~~~~~~~ 333 (452)
+++++ +++++. + .... .......+...+.++..+++...+ +..-++..++++++++++
T Consensus 262 ~~~~~~~~l~~~-l-~~~~-----------~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
T 2hox_A 262 WALIKDESVYNN-L-LNYM-----------TKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN 328 (427)
T ss_dssp EEEECCHHHHHH-H-HHHH-----------HHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHH-H-HHHH-----------HhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 99994 666654 1 1110 000112233333333334432211 011245567788888999
Q ss_pred HHHHHHHHcCCCc--CC-Cc---------ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 334 MARMLANAWGTSL--GS-PP---------EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 334 l~~~L~~~~~~~~--~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
+.+.|.+++++.+ .. +. ...+.++|+.++. +..++.+.|.+++||.+.++..+.
T Consensus 329 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gI~v~pg~~f~------ 394 (427)
T 2hox_A 329 ITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--------EEDKDCYQTFQNGRINTQNGVGFE------ 394 (427)
T ss_dssp HHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--------GGGCSHHHHHHHTTEECEEGGGGT------
T ss_pred HHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--------cHHHHHHHHHHHCCEEEcCCCccC------
Confidence 9999988767665 22 21 1226788888861 334566766545699998776652
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+|+.. ++++++++++.|+++++.
T Consensus 395 ---------~~~~~~Ris~~~--~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 395 ---------ASSRYVRLSLIK--TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp ---------SCTTEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred ---------CCCCEEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 135799999985 889999999999999865
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.6e-22 Score=194.05 Aligned_cols=303 Identities=17% Similarity=0.165 Sum_probs=198.1
Q ss_pred HHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHh-cCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE--
Q 012991 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFL-QQPDDFYFNSLRKGILESRAAVKDLINADDVGEISL-- 103 (452)
Q Consensus 27 ~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~-- 103 (452)
.++++.|+.. +.+++.|. ..|++++.+...... ..+...+.+. +...+++++.+++++|.+ ..+++
T Consensus 29 ~~~~~~~~~~-~~i~~~n~-------~~Vl~a~~~~~~~~~~~~~~~gy~Y~-~~g~~~Le~~lA~l~g~e--~alv~p~ 97 (427)
T 3hvy_A 29 NDVEKEFKYY-DEIREYNQ-------LKVLKAFQEERISESHFTNSSGYGYN-DIGRDSLDRVYANIFNTE--SAFVRPH 97 (427)
T ss_dssp HHHHHHHHHH-HHHHHHHH-------HHHHHHHHHTTCCGGGSCCCCTTCTT-CHHHHHHHHHHHHHHTCS--EEEEETT
T ss_pred HHHHHHHHHH-HHHHHhhH-------HHHHHHHHHHHHHHHhcccCcCCCCC-chhHHHHHHHHHHHhCCC--ceEEeCC
Confidence 4445555532 34445553 457777766432110 0111222222 224788999999999995 34443
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeC-CcchhHHHHHH-------HHHHhcCcEEEEEeCCCCCCChHHH-H
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLH-CAFQAVKKSIQ-------AYVTRAGGSVVEVQLPFPLASEEEI-I 174 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~~-------~~a~~~g~~v~~~~~~~~~~~~~~~-~ 174 (452)
++|||+|+..++.++ +++||+|++++ +.|.+....+. ..+...|++++.++. +++.+ +
T Consensus 98 ~~sGt~A~~~al~al--------l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-----~~~~~d~ 164 (427)
T 3hvy_A 98 FVNGTHAIGAALFGN--------LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-----KDGKVDI 164 (427)
T ss_dssp CCSHHHHHHHHHHHT--------CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-----BTTBCCH
T ss_pred CCcHHHHHHHHHHHh--------cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-----CCCCcCH
Confidence 789999999999876 68999999998 89987653330 113456999998843 22333 8
Q ss_pred HHHHHHHhccccCCCceEEEEEec----cCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCccccccccCccEEE
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDH----ITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSIKIDVKEIGADFYV 248 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~ 248 (452)
+++++++++ .++|++|++++ ++||+|.+.|+++|+++|++ +|+ ++++|++++.+.........++|+++
T Consensus 165 e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~-~livD~a~~~~~~~~~p~~~gaDiv~ 239 (427)
T 3hvy_A 165 NTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENV-IVFVDNCYGEFVEEKEPTDVGADIIA 239 (427)
T ss_dssp HHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSS-EEEEECTTCTTTSSSCGGGGTCSEEE
T ss_pred HHHHHHhhC----CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCC-EEEEECCccccccCCCCcccCCeEEE
Confidence 999999953 26899999999 99999999999999999999 899 89999999887643333445789999
Q ss_pred EcCcccCcC---CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHH
Q 012991 249 SNLHKWFFC---PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQ 325 (452)
Q Consensus 249 ~s~~K~l~g---~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~ 325 (452)
.|+||+++| +.| |+++.++++++. +...... .+.+.. ..++. .....+++-+.. ....++
T Consensus 240 ~S~sK~lgg~g~~~G-G~i~~~~~li~~-l~~~~~~--~~~g~~------~~~~~---~~a~~~~~gl~~----~~~r~~ 302 (427)
T 3hvy_A 240 GSLIKNIGGGIATTG-GYIAGKEEYVTQ-ATFRVTV--PGIGGE------CGSTF---GVMRSLYEGLFM----APHVTI 302 (427)
T ss_dssp EETTSGGGTTTCCSC-EEEEECHHHHHH-HHHHHSC--TTTGGG------CCCCT---TCHHHHHHHHHH----HHHHHH
T ss_pred ECCcccccccccceE-EEEEECHHHHHH-HHHHhhc--CCcccc------cCCCH---HHHHHHHHhHhH----HHHHHH
Confidence 999998766 454 999999888775 2110000 011000 01111 112333333332 344566
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhh
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRV 382 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 382 (452)
+..+++.++.+.|.++ ++++...+. ....++.|.+. +.....++++.|..
T Consensus 303 ~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~li~~~~l~------~~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 303 EAVKGAVFCARIMELA-GFDVLPKYNDKRTDIIQAIKFN------DEKKLIDFIKGIQT 354 (427)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSEEEEECS------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCeecCCCCCCCceEEEEEeCC------CHHHHHHHHHHhcc
Confidence 7888999999999987 566532221 11237777774 34566778888854
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=192.88 Aligned_cols=337 Identities=13% Similarity=0.117 Sum_probs=211.6
Q ss_pred CCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
+..++.+..+ ..+..++.+.+++.+.+... . . +. ...+...+++++++++++ . .++++|++|||+|+.
T Consensus 55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--~-~--~~-~~~~~~~~l~~~la~~~~-~-~~~v~~~~sgseA~~ 126 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALARG--W-L--YG-APGEAEVLLAEKILGYVK-R-GGMIRFVNSGTEATM 126 (434)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--S-C--CS-SCCHHHHHHHHHHHHHHC-T-TCEEEEESSHHHHHH
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC--C-C--CC-CCCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHH
Confidence 4445555433 23556788999999887541 1 1 11 134567889999999995 2 479999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH----------HhcCc------EEEEEeCCCCCCChHHHHHH
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV----------TRAGG------SVVEVQLPFPLASEEEIINE 176 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a----------~~~g~------~v~~~~~~~~~~~~~~~~~~ 176 (452)
.++.+. +. +.++++|++.++.|++.......++ ...|+ .+..++ .++ ++.
T Consensus 127 ~al~~a-r~-----~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~----~~d----~~~ 192 (434)
T 2epj_A 127 TAIRLA-RG-----YTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTP----YND----VEA 192 (434)
T ss_dssp HHHHHH-HH-----HHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEE----TTC----HHH
T ss_pred HHHHHH-HH-----hhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecC----CCC----HHH
Confidence 999862 11 2456788888888876432210000 00122 244443 222 678
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCc---c--ccccccCccEE
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSI---K--IDVKEIGADFY 247 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~---~--~~~~~~~~d~~ 247 (452)
|++.+++. .+++++|+++..++++|.+.| +++|.++|++||+ ++|+|++|+ |.. . .+.....+|++
T Consensus 193 le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~-g~~~g~~~~~~~~~~~~di~ 267 (434)
T 2epj_A 193 LERVFAEY---GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA-LLILDEVVT-GFRLGLEGAQGYFNIEGDII 267 (434)
T ss_dssp HHHHHHHH---GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC-EEEEEETTT-TTTSSTTHHHHHHTCCCSEE
T ss_pred HHHHHHhC---CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC-EEEEEcchh-ceeCCcchhhHHhCCCCCee
Confidence 88888632 247889999888888999988 9999999999999 899999998 221 0 11112347876
Q ss_pred EEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 248 VSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 248 ~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
|++|+++++..+|++++++++++. +. +.... . ...+.+.+...+.+..++++.+.+ +.+.+++
T Consensus 268 --s~sK~l~~G~~~G~v~~~~~~~~~-l~-~~~~~-------~-~~~t~~~~~~~~aa~~a~l~~~~~-----~~~~~~~ 330 (434)
T 2epj_A 268 --VLGKIIGGGFPVGAVAGSREVMSL-LT-PQGKV-------F-NAGTFNAHPITMAAGLATLKALEE-----EPVYSVS 330 (434)
T ss_dssp --EEEGGGGTTSSCEEEEECHHHHTT-BT-TTSSB-------C-CCCTTTTCHHHHHHHHHHHHHHHH-----SCHHHHH
T ss_pred --eecchhcCCcceeeeeecHHHHHh-hc-cCCCc-------c-cCCCCCcCHHHHHHHHHHHHHHHh-----cCHHHHH
Confidence 455987664347999999887765 21 11000 0 000112333344445556665553 3456778
Q ss_pred HHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCcc--c-----cCChhhHHHHHHHHhhhcceEeeecccCCCC
Q 012991 328 HEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRL--R-----VMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~ 397 (452)
+++.+++.+.|.++. ++.. .....+.++++.+++.. . ..+..+..++.+.|.++ ||.+..+.
T Consensus 331 ~~~~~~l~~~L~~~~~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----- 402 (434)
T 2epj_A 331 REAAKALEEAASEVLDRTGLPY--TINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPSN----- 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCE--EEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST-----
T ss_pred HHHHHHHHHHHHHHHhhCCCcE--EEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEeccC-----
Confidence 888888888887652 3321 11123678888876200 0 00123466788888764 99985321
Q ss_pred CCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 398 DGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+|++ ..+|++|+++++++|++++++
T Consensus 403 ---------------~~~~~~~--~~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 403 ---------------LEAVFTG--LPHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp ---------------TSCEECC--TTCSHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCcEEEe--ccCCHHHHHHHHHHHHHHHHH
Confidence 1346665 456999999999999998764
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-21 Score=188.99 Aligned_cols=325 Identities=12% Similarity=0.079 Sum_probs=209.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.|.+++.+.+..... + ....+...+++++++++++ + .++++|++|||+|+..++..+. ..
T Consensus 67 lG~~~p~v~~A~~~~~~~~~~-----~-~~~~~~~~~l~~~la~~~~-~-~~~v~~~~~Gsea~~~ai~~a~------~~ 132 (429)
T 3k28_A 67 HGHANDRVVEALKAVAERGTS-----F-GAPTEIENKLAKLVIERVP-S-IEIVRMVNSGTEATMSALRLAR------GY 132 (429)
T ss_dssp TCBSCHHHHHHHHHHHHHCSC-----C-SSCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHH------HH
T ss_pred cCCCCHHHHHHHHHHHhhCcC-----c-CCCCHHHHHHHHHHHHhCC-C-CCEEEEeCChHHHHHHHHHHHH------Hh
Confidence 345688899999988765311 1 1234567888999999987 2 5899999999999999998652 11
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCc-------------------EEEEEeCCCCCCChHHHHHHHHHHHhccccCC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGG-------------------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDG 188 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-------------------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 188 (452)
.++++|++.++.|++....... ..|. .+..++ .++ +++|++++++. .
T Consensus 133 ~~~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d----~~~le~~l~~~---~ 198 (429)
T 3k28_A 133 TGRNKILKFIGCYHGHGDSLLI---KAGSGVATLGLPDSPGVPEGVAKNTITVA----YND----LESVKYAFEQF---G 198 (429)
T ss_dssp HTCCEEEEEETCCCCSCGGGCS---SCCTTC-----CCCTTCCHHHHTTEEEEE----TTC----HHHHHHHHHHH---G
T ss_pred hCCCEEEEECCCcCCCcHHHHH---hcCCcccccCCCCcCCCCCcccCceeecC----CCC----HHHHHHHHHhC---C
Confidence 3567899988888754322110 0111 222331 122 67888888642 2
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccC---Cc-cccccccCccEEEEcCcccCcCCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMG---SI-KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g---~~-~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|..- .. ..+.....+|++++ +|++.++..
T Consensus 199 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~g~~~g~~~~~~~~~~~~di~t~--sK~~~~G~~ 275 (429)
T 3k28_A 199 DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGA-LLIFDEVMTGFRVAYNCGQGYYGVTPDLTCL--GKVIGGGLP 275 (429)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTSSTTHHHHHHTCCCSEEEE--CGGGGTTSC
T ss_pred CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeccccccccCcchHHHHhCCCCceehh--hhhhcCCCC
Confidence 57889999988888999988 9999999999999 89999998621 10 11122234677665 598766555
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|++++++++++. +. +.. ....+.+......++.+++..+... . +.+.++++++++++++.|.+
T Consensus 276 iG~~~~~~~~~~~-~~-~~~-----------~~~~~~t~~~~~~a~aaa~aal~~~--~-~~~~~~~~~~~~~l~~~L~~ 339 (429)
T 3k28_A 276 VGAYGGKAEIMRQ-VA-PSG-----------PIYQAGTLSGNPLAMAAGYETLVQL--T-PESYVEFERKAEMLEAGLRK 339 (429)
T ss_dssp CEEEEECHHHHTT-BT-TTS-----------SBCCCCTTTTCHHHHHHHHHHHHTC--C-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcHHHHhh-hc-cCC-----------CccccCCCCCChHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHH
Confidence 8999999888775 21 110 0001111222334444455555543 3 67888889999999999887
Q ss_pred HcC-CCcCCCcccccceEEEEcCCccc-------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 341 AWG-TSLGSPPEICAAMVMVGLPSRLR-------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 341 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
+.. ..........+.++++.+.+... ..+.....++.+.|.++ ||.+..+ .
T Consensus 340 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~--------------------~ 398 (429)
T 3k28_A 340 AAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPS--------------------Q 398 (429)
T ss_dssp HHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSS--------------------T
T ss_pred HHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecC--------------------C
Confidence 521 12222222336677777642100 01223356788888775 9998532 1
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.+|+++ .+|++|+++++++|++++++
T Consensus 399 ~~~~r~~~--~~t~e~i~~~l~~l~~~l~~ 426 (429)
T 3k28_A 399 FEGLFLST--VHSDADIEATIAAAEIAMSK 426 (429)
T ss_dssp TSCBCCCT--TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEC--CCCHHHHHHHHHHHHHHHHH
Confidence 24678865 45999999999999999865
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=201.32 Aligned_cols=311 Identities=12% Similarity=0.040 Sum_probs=213.1
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
.+.....++++.+|+++|++ ..+++++|++.|+..++.++ +++||+|++++++|.|+..++ ...|+
T Consensus 192 ~~~g~i~eaE~~lA~~fGa~--~a~~v~nGts~An~~ai~al--------~~pGD~VLv~r~~H~S~~~~l----~lsGa 257 (715)
T 3n75_A 192 DHSGPHKEAEQYIARVFNAD--RSYMVTNGTSTANKIVGMYS--------APAGSTILIDRNCHKSLTHLM----MMSDV 257 (715)
T ss_dssp TTBTHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHH--------CCTTCEEEEESSCCHHHHHHH----HHSCC
T ss_pred CCcHHHHHHHHHHHHHhCCC--CceEECcHHHHHHHHHHHHh--------CCCCCEEEECCCccHHHHHHH----HHcCC
Confidence 44556899999999999996 55666677789999999987 589999999999999988775 44699
Q ss_pred EEEEEeCCCCCCCh--------HH-HHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEe
Q 012991 157 SVVEVQLPFPLASE--------EE-IINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 157 ~v~~~~~~~~~~~~--------~~-~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD 227 (452)
++++++... +.. .. .++.+++++++.+. .+++++++++++ |++|.+.|+++|+++|+++ .+++|
T Consensus 258 ~pv~v~~~~--~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~---~livD 330 (715)
T 3n75_A 258 TPIYFRPTR--NAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK---SIHFD 330 (715)
T ss_dssp EEEEECCCB--CTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCS---EEEEE
T ss_pred EEEEEeccc--cccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcC---cEEEc
Confidence 999996531 111 11 27889999975311 123458999999 8999999999999999754 37899
Q ss_pred cccccCCc--cc--ccccc--C--ccEE---EEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCccccccccc
Q 012991 228 AAHAMGSI--KI--DVKEI--G--ADFY---VSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIG 296 (452)
Q Consensus 228 ~a~~~g~~--~~--~~~~~--~--~d~~---~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (452)
+||+.+.. +. +...+ + +|++ +.|+||++.|+.+.|+++++++.... ..... ....+++
T Consensus 331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~-~~~~~----------~~~~~ST 399 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEE-TFNEA----------YMMHTTT 399 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHH-HHHHH----------HHHTSCS
T ss_pred cccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHH-HHHHH----------HHhhcCC
Confidence 99986641 11 11111 2 5765 89999998888788999998763221 00000 1223357
Q ss_pred ccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC------CCcCCCccc------------------
Q 012991 297 TRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG------TSLGSPPEI------------------ 352 (452)
Q Consensus 297 ~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~~~------------------ 352 (452)
++++..++++.++++++... .| +.++++..++++++++.|.++++ +++..++.-
T Consensus 400 Spsy~~~AsldaA~~~~~~~-~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~ 477 (715)
T 3n75_A 400 SPHYGIVASTETAAAMMKGN-AG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFK 477 (715)
T ss_dssp SCCHHHHHHHHHHHHHHSHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCT
T ss_pred CchHHHHHHHHHHHHHHHhh-cc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccccccc
Confidence 88888888898888887631 13 45778899999999999988753 233322210
Q ss_pred ---c------cceEEEEcCCcccc----CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 353 ---C------AAMVMVGLPSRLRV----MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 353 ---~------~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
. ..=+.+..+..... ..+.++..+.+.|++ +||.+-.. +...+-+-
T Consensus 478 ~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~-~~I~~E~~--------------------d~~~vl~l 536 (715)
T 3n75_A 478 NIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDE-HGIVVEKT--------------------GPYNLLFL 536 (715)
T ss_dssp TCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHH-TTCCCSEE--------------------ETTEEEEE
T ss_pred ccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHH-CCCEEEec--------------------CCCcEEEE
Confidence 0 00123333321000 115677889999965 59987422 12455555
Q ss_pred ccccCCHHHHHHHHHHHHHHHhc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++..+|.+++++|+++|.++.+.
T Consensus 537 ~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 537 FSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHH
Confidence 66667999999999999988653
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-21 Score=190.08 Aligned_cols=338 Identities=12% Similarity=0.048 Sum_probs=200.6
Q ss_pred CCCeEEeccCC----CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNGS----FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~~----~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
+..++.+..+. .++.++.+.+++.+.+... . .+. ...+..+++.+++++.++ + .+++++++||++|+.
T Consensus 56 g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~--~---~~~-~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~ 127 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG--V---QYA-ASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTL 127 (453)
T ss_dssp CCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT--C---SSC-SSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHH
T ss_pred CCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC--C---CCC-CCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHH
Confidence 34455554332 3456788999998877541 1 111 245667888888888876 3 589999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHH-------hcCcE------EEEEeCCCCCCChHHHHHHHHH
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT-------RAGGS------VVEVQLPFPLASEEEIINEFKK 179 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~-------~~g~~------v~~~~~~~~~~~~~~~~~~l~~ 179 (452)
.++.+. +. +.++++|++.++.|++.......... ..|+. +..+ +.++ +++|++
T Consensus 128 ~al~~a-r~-----~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~d----~~~le~ 193 (453)
T 2cy8_A 128 LALRVA-RA-----FTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLI----RPDD----IEGMRE 193 (453)
T ss_dssp HHHHHH-HH-----HHCCCEEEEECC----------------------------CGGGEEEE----CTTC----HHHHHH
T ss_pred HHHHHH-HH-----hhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeec----CCCC----HHHHHH
Confidence 999862 11 13457888888988865443322110 01322 2333 2222 688888
Q ss_pred HHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCc-c----ccccccCccEEEEc
Q 012991 180 GIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSI-K----IDVKEIGADFYVSN 250 (452)
Q Consensus 180 ~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~-~----~~~~~~~~d~~~~s 250 (452)
++++. .+++++|+++..++++|.+.| +++|.++|++||+ ++|+|++|+ |.. . .+.....+|++ |
T Consensus 194 ~l~~~---~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s 266 (453)
T 2cy8_A 194 VFANH---GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA-LFILDEVIS-GFRVGNHGMQALLDVQPDLT--C 266 (453)
T ss_dssp HHHHH---GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC-EEEEECTTT-TTTTCTTHHHHHHTCCCSEE--E
T ss_pred HHHhc---CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecCcc-ccccCchhhhHHhCCCCcEE--E
Confidence 88632 247889988887788999887 9999999999999 899999997 331 0 11112346876 5
Q ss_pred CcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHHHHHHHHH
Q 012991 251 LHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 251 ~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~~~~~~~~ 329 (452)
++|++.++..+|++++++++++. +..... +. .....+.+.+...+.+..++++. + . +.+.+++++
T Consensus 267 ~sK~l~~G~~~G~v~~~~~~~~~-l~~~~~----~~---~~~~~t~~~n~~~~aa~~aal~~~~-~-----~~~~~~~~~ 332 (453)
T 2cy8_A 267 LAKASAGGLPGGILGGREDVMGV-LSRGSD----RK---VLHQGTFTGNPITAAAAIAAIDTIL-E-----DDVCAKIND 332 (453)
T ss_dssp EEGGGGTTSSCEEEEECHHHHTT-SSSCC----------------CCCCHHHHHHHHHHHHHHH-H-----TTHHHHHHH
T ss_pred EChhhhCCcceEEEechHHHHHH-hccccC----CC---ceeCCCCCCCHHHHHHHHHHHHHHh-h-----hhHHHHHHH
Confidence 56987754458999999887765 221000 00 00000112333344444455555 4 2 235677788
Q ss_pred HHHHHHHHHHHHc-CCCcCCCcccccceEEEEcCC-----c---ccc-----CChhhHHHHHHHHhhhcceEeeecccCC
Q 012991 330 QALKMARMLANAW-GTSLGSPPEICAAMVMVGLPS-----R---LRV-----MGEDDALRLRGHLRVRFGVEVPIHYQAP 395 (452)
Q Consensus 330 ~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~-----~---~~~-----~~~~~~~~l~~~L~~~~gI~v~~~~~~~ 395 (452)
+.+++.+.|.++. ...+.......+.++++.++. . ... .+..+..++.+.|.++ ||.++.
T Consensus 333 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~----- 406 (453)
T 2cy8_A 333 LGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GVDIGG----- 406 (453)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TEECBT-----
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-CeEEeC-----
Confidence 8888888887652 111111111236788888762 0 000 0122456788888764 999831
Q ss_pred CCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 396 KDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
. +.+|++ ..++++|+++++++|+++++.
T Consensus 407 ---------------~--~~~~l~--~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 407 ---------------R--GSVFLS--AQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp ---------------T--TEEECC--TTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------C--CCEEee--ccCCHHHHHHHHHHHHHHHHH
Confidence 1 236765 456999999999999988753
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=192.53 Aligned_cols=341 Identities=15% Similarity=0.107 Sum_probs=207.7
Q ss_pred CCCCcHHHHHHHHHHHHHH-hcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccc---
Q 012991 48 FGSCPKSVLADQQKWQLKF-LQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT--- 123 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~--- 123 (452)
.|..++.+.+++.+.+... ..+..........++.+++.+.++++++.+ .+.++|++||++|+..++..+...+.
T Consensus 77 lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~-~~~v~f~~sGseA~~~Aik~a~~~~~~~~ 155 (472)
T 1ohv_A 77 IGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENAFKTIFMWYRSKE 155 (472)
T ss_dssp SCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTT-CCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCC-cCEEEEeCCchhHHHHHHHHHHHHhhhhc
Confidence 4566788999998865322 112211111112345555666666666543 57999999999999999986531100
Q ss_pred cC--------------CCCCC---CEEEEeCCcchhHHHHHHHHHH-----hcCcEE---EEEeCCC---CCC-C--hH-
Q 012991 124 EG--------------RFHRN---DTVLMLHCAFQAVKKSIQAYVT-----RAGGSV---VEVQLPF---PLA-S--EE- 171 (452)
Q Consensus 124 ~~--------------~~~~g---~~Vl~~~~~~~s~~~~~~~~a~-----~~g~~v---~~~~~~~---~~~-~--~~- 171 (452)
+. .-.+| ++|++.++.|++.......+.. ..+... ..++++. +.. . ..
T Consensus 156 ~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 235 (472)
T 1ohv_A 156 RGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQ 235 (472)
T ss_dssp HTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHH
T ss_pred cCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccch
Confidence 00 00134 8999999998886554432211 112211 1222210 100 0 11
Q ss_pred ---H-HHHHHHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc--cccc
Q 012991 172 ---E-IINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK--IDVK 240 (452)
Q Consensus 172 ---~-~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~~~~ 240 (452)
. .+++|++++++......++++|+++..+|++|.+.| +++|.++|++||+ ++|+|++|+ +|... +...
T Consensus 236 ~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~-lli~DEv~~g~g~~g~~~~~~ 314 (472)
T 1ohv_A 236 QEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC-AFLVDEVQTGGGSTGKFWAHE 314 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGG
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCC-EEEEeCcccCCCCCCCchhcc
Confidence 2 278888888642111127899999988999999877 9999999999999 899999997 44432 2333
Q ss_pred ccC----ccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh
Q 012991 241 EIG----ADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF 316 (452)
Q Consensus 241 ~~~----~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 316 (452)
..+ +|++++| |++ ..| |+++ ++++... .+.. .+ .+.+.+...+.+..++++.+.+
T Consensus 315 ~~gv~~~~Di~t~s--K~~--l~G-G~~~-~~~~~~~---~~~~---~~--------~T~~~~~~~~aaa~aal~~~~~- 373 (472)
T 1ohv_A 315 HWGLDDPADVMTFS--KKM--MTG-GFFH-KEEFRPN---APYR---IF--------NTWLGDPSKNLLLAEVINIIKR- 373 (472)
T ss_dssp GGCCSSCCSEEEEC--GGG--SSE-EEEE-CGGGSCS---SSSS---SC--------CSSSSCHHHHHHHHHHHHHHHH-
T ss_pred ccCCCCCCCEEEEc--ccc--ccC-CccC-chhhccc---cccc---cc--------CccCccHHHHHHHHHHHHHHHh-
Confidence 333 7887655 973 123 6655 5444211 1110 00 0112233444555566666654
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHc-CCC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 317 EGGIDGIMQRNHEQALKMARMLANAW-GTS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 317 ~~g~~~~~~~~~~~~~~l~~~L~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
+.+.++++++++++++.|.++. ++. .+......+.++++.++ +..+...+.+.|.++ ||.+...
T Consensus 374 ----~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~------~~~~~~~~~~~l~~~-Gv~~~~~--- 439 (472)
T 1ohv_A 374 ----EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP------DESIRNKLISIARNK-GVMLGGC--- 439 (472)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS------SHHHHHHHHHHHHHT-TEECEEE---
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeC------ChhHHHHHHHHHHHC-CeEEecC---
Confidence 2357788899999999998762 222 11111223667777765 233566788888774 9998532
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++||++++..+|++||++++++|++++++
T Consensus 440 -----------------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 440 -----------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp -----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1369999999999999999999999998764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-20 Score=183.90 Aligned_cols=327 Identities=13% Similarity=0.105 Sum_probs=202.6
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
|..++.+.+++.+.+.... . +. .+.+...++.++++++++ . .++++|++|||+|++.++..+. . ..
T Consensus 68 G~~~p~v~~A~~~~~~~~~----~-~~-~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGsea~~~al~~a~-~-----~~ 133 (429)
T 4e77_A 68 GHNHPAIRQAVIEAVERGL----S-FG-APTEMEVKMAQLVTDLVP-T-MDMVRMVNSGTEATMSAIRLAR-G-----YT 133 (429)
T ss_dssp CBTCHHHHHHHHHHHTTCS----C-CS-SCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHH-H-----HH
T ss_pred CCCCHHHHHHHHHHHHhCc----c-cC-CCCHHHHHHHHHHHhhCC-C-CCEEEEeCcHHHHHHHHHHHHH-H-----hh
Confidence 4567889999988775421 1 11 134667889999999987 3 5899999999999999998542 1 24
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCc-----------------EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGG-----------------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-----------------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
++++|++.++.|++........ ...+. .+..+ +.++ +++|++.+++. .+++
T Consensus 134 ~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~le~~l~~~---~~~~ 201 (429)
T 4e77_A 134 GRDKIIKFEGCYHGHADCLLVK-AGSGALTLGQPNSPGVPTDFAKHTLTC----TYND----LASVRQAFEQY---PQEV 201 (429)
T ss_dssp CCCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEE----CTTC----HHHHHHHHHHS---TTTE
T ss_pred CCCEEEEEcCccCCCChhhhhh-cCCcccccCCCCcCCCCCccCCceeec----CCCC----HHHHHHHHHhc---CCCE
Confidence 5678999888888765422110 00010 11222 1112 68888888642 3578
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc---cCCc-cccccccCccEEEEcCcccCcCCCCcEE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA---MGSI-KIDVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~---~g~~-~~~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
++|+++..++++|.+.+ +++|.++|++||+ ++|+|++|+ .|.. ..+.....+|++++ +|++.++..+|+
T Consensus 202 ~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~-lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~--sK~~~~G~~~G~ 278 (429)
T 4e77_A 202 ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGA-LLIIDEVMTGFRVALAGAQDYYHVIPDLTCL--GKIIGGGMPVGA 278 (429)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC-EEEEEETTTBTTTBTTCHHHHTTCCCSEEEE--EGGGGTTSCCEE
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCcccCcchHHHhcCCCCCeeee--cccccCCCCeEE
Confidence 88888877777888888 9999999999999 899999998 2221 11222334687654 598765555899
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW- 342 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~- 342 (452)
+++++++++. +.... . .....+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|.++.
T Consensus 279 ~~~~~~~~~~-l~~~~-~--------~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~ 343 (429)
T 4e77_A 279 FGGRREVMNA-LAPTG-P--------VYQAGTLSGNPIAMAAGFACLTEISQ-----VGVYETLTELTDSLATGLRHAAK 343 (429)
T ss_dssp EEECHHHHTT-BTTTS-S--------BCC--CCCCCHHHHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHH-hccCC-C--------ccccCCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888775 22110 0 00000112333344444445554431 4556777788888888876642
Q ss_pred CCCcCCCcccccceEEEEcCCccc--------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 343 GTSLGSPPEICAAMVMVGLPSRLR--------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
...+.......+.++++.+++... ..+.....++.+.|.++ ||.+..+. ..
T Consensus 344 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~--------------------~~ 402 (429)
T 4e77_A 344 EENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA--------------------FE 402 (429)
T ss_dssp HTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST--------------------TS
T ss_pred hCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC--------------------CC
Confidence 112222222347788888763200 00112346788888775 99986321 13
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+|++ ..+|++|+++++++|++++++
T Consensus 403 ~~~~~--~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 403 AGFMS--LAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp CEECC--TTCCHHHHHHHHHHHHHHHTT
T ss_pred CEEEe--ccCCHHHHHHHHHHHHHHHHh
Confidence 46665 446999999999999998753
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=178.63 Aligned_cols=317 Identities=16% Similarity=0.133 Sum_probs=209.4
Q ss_pred HHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCC-CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeC
Q 012991 85 SRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR-NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQL 163 (452)
Q Consensus 85 ~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~-g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~ 163 (452)
+..+++.+ |.+.....++++|+|.++.+++.+.++.- ++ +++||+++.+|.|+.+++.. .|++++++++
T Consensus 122 ~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~-----rpg~d~VIvpRn~HKSv~kAliL----~Gl~Pv~V~p 191 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHK-----RPKAKYIIWPRIDQKSCFKSMIT----AGFEPVVIEN 191 (501)
T ss_dssp HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHH-----CTTCCEEEEECCCCHHHHHHHHH----TTCEEEEECE
T ss_pred HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcc-----cCCCCEEEEecchHHHHHHHHHH----cCCeEEEEee
Confidence 44455554 99855568999999977776666654311 23 49999999999999998865 5999999965
Q ss_pred CCCCCChHHH-HHHHHHHHhccccCCCceEEEEEecc-CCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-----
Q 012991 164 PFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK----- 236 (452)
Q Consensus 164 ~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~-~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~----- 236 (452)
... ++...+ +++++++|+++ +.+..++++..+ ++-.+...|+++|+++|++||+ +++||+||+.-...
T Consensus 192 ~~d-~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gI-pllVDeAhGah~~~~~~lp 266 (501)
T 3hl2_A 192 VLE-GDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDI-PHIVNNAYGVQSSKCMHLI 266 (501)
T ss_dssp EEE-TTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTC-CEEEECTTCTTCHHHHHHH
T ss_pred eec-ccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCC-eEEEeCcchhhhhhhhhhH
Confidence 211 122334 89999999864 323334444444 3334566899999999999999 69999998763321
Q ss_pred ccccccC-ccEEEEcCcccCcCCCCcEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH
Q 012991 237 IDVKEIG-ADFYVSNLHKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314 (452)
Q Consensus 237 ~~~~~~~-~d~~~~s~~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 314 (452)
...-..+ +|+++.|.||++..|.|.++++.++ +++++ + ...++|+.+..+.+.+..++..+.
T Consensus 267 ~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~-~---------------~~~yPGr~S~Spsldl~~tLL~lG 330 (501)
T 3hl2_A 267 QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE-I---------------SKMYPGRASASPSLDVLITLLSLG 330 (501)
T ss_dssp HHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHH-H---------------HHTSCSCBCSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHH-H---------------HHhCCCCCCCcHHHHHHHHHHHHH
Confidence 1222346 9999999999999998866666654 34443 1 111235555666666666776666
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 315 RFEGGIDGIMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
.- |++++.++..+++++|.+.|.++.. -++...+.+ ..-+.+.+.. +....+.+..++-..|..+ +|--+..
T Consensus 331 r~--Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n-~is~a~tl~~-~~~~~~~~~t~~gs~Lf~r-~vsG~Rv 405 (501)
T 3hl2_A 331 SN--GYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHN-PISLAMTLKT-LDEHRDKAVTQLGSMLFTR-QVSGARV 405 (501)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTC-SSEEEEECTT-SCTTTSCHHHHHHHHHHHT-TCCSCEE
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCC-ceeEEEeccc-ccccccccHHHHHHHHHhc-CCCccee
Confidence 54 8999999999999999999988643 345444432 3345566531 1111123456777777654 5542211
Q ss_pred -----------ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 392 -----------YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 392 -----------~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
+.+.+-|.+.. ...-.++-++.....+.+||+.+++.|.+++....
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~-------~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~ 462 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTN-------NYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVR 462 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSS-------CCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCceEECCeeecCcccCCC-------CCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 11111121111 23356899998888999999999999999997654
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-20 Score=184.94 Aligned_cols=335 Identities=15% Similarity=0.113 Sum_probs=209.1
Q ss_pred CCCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.+..++.|..+ ..++.++.+.+++.+.+... . . +. ...+...+++++++++++ + .+++++++||++|+
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~-~--~~-~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~ea~ 121 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG--L-T--FG-APSPLEVALAKKVKRAYP-F-VDLVRFVNSGTEAT 121 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--S-C--CS-SCCHHHHHHHHHHHHHCT-T-CCEEEEESSHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC--C-C--CC-CCCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHH
Confidence 34455555443 23566788999999887541 1 1 11 135567889999999986 3 58999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHH----------hcCc------EEEEEeCCCCCCChHHHHH
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT----------RAGG------SVVEVQLPFPLASEEEIIN 175 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~----------~~g~------~v~~~~~~~~~~~~~~~~~ 175 (452)
..++... +. +.++++|++.++.|++........+. ..|+ .+..+ +..+ ++
T Consensus 122 ~~al~~a-r~-----~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~----~~~d----~~ 187 (424)
T 2e7u_A 122 MSALRLA-RG-----YTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVL----EYND----PE 187 (424)
T ss_dssp HHHHHHH-HH-----HHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEE----CTTC----HH
T ss_pred HHHHHHH-HH-----hhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeC----CCCC----HH
Confidence 9998852 11 23458899999988864322110000 0121 23444 2222 67
Q ss_pred HHHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCc-c----ccccccCccE
Q 012991 176 EFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSI-K----IDVKEIGADF 246 (452)
Q Consensus 176 ~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~-~----~~~~~~~~d~ 246 (452)
+|++.+++. .+++++|+++..++++|.+.| +++|.++ ++||+ ++|+|++|+ |.. . .+.....+|+
T Consensus 188 ~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~-~lI~DEv~~-g~~~g~~~~~~~~~~~~di 261 (424)
T 2e7u_A 188 GLREVLKRR---GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV-LLIADEVMT-GFRLAFGGATELLGLKPDL 261 (424)
T ss_dssp HHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC-EEEEECTTT-TTTSSTTHHHHHHTCCCSE
T ss_pred HHHHHHHhC---CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC-EEEEecCcc-ccccchhHHHHHhCCCcch
Confidence 888888532 246788888776667999887 9999999 99999 899999998 221 0 1111234687
Q ss_pred EEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHH
Q 012991 247 YVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQR 326 (452)
Q Consensus 247 ~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~ 326 (452)
+ |++|+++++..+|++++++++++. +. +.... + .. .+.+.+...+.+..++++.+.+ .+.+.++
T Consensus 262 ~--s~sK~l~~G~~~G~~~~~~~~~~~-~~-~~~~~-~-----~~--~t~~~~~~~~aaa~aal~~~~~----~~~~~~~ 325 (424)
T 2e7u_A 262 V--TLGKILGGGLPAAAYAGRREIMEK-VA-PLGPV-Y-----QA--GTLSGNPLAMAAGLATLELLEE----NPGYYAY 325 (424)
T ss_dssp E--EECGGGGTTSSCEEEEECHHHHTT-BT-TTSSB-C-----CC--CTTCSCHHHHHHHHHHHHHHHH----CTHHHHH
T ss_pred h--hhhhhhhCCcceEEEEEcHHHHhh-hc-ccCCc-c-----cC--CCCCCCHHHHHHHHHHHHHHHh----ccHHHHH
Confidence 6 556987654448999999887765 22 11000 0 00 0112233344444556665543 1567888
Q ss_pred HHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCcc-c------cCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 327 NHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRL-R------VMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
++++.+++.+.|.++. ++.. .....+.++++.++... . ..+..+..++.+.|.+ .||.+..+.
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~---- 398 (424)
T 2e7u_A 326 LEDLGARLEAGLKEVLKEKGLPH--TVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSN---- 398 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC--EEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSS----
T ss_pred HHHHHHHHHHHHHHHHHhCCCce--EEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccC----
Confidence 8999999999988752 3321 11123678888876210 0 0012345678888876 599986321
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
...+|++ ..+|++|+++++++|+++
T Consensus 399 ----------------~~~~~~~--~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 399 ----------------FEAAFLS--VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp ----------------SSCEECC--TTCCHHHHHHHHHHHHHH
T ss_pred ----------------CCceEee--ccCCHHHHHHHHHHHHHh
Confidence 1346666 446999999999999876
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-21 Score=189.34 Aligned_cols=259 Identities=12% Similarity=0.125 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEE--EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeC-CcchhHHHHHH------HH
Q 012991 80 KGILESRAAVKDLINADDVGEIS--LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLH-CAFQAVKKSIQ------AY 150 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~--~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~~------~~ 150 (452)
...+++++.+++++|.+ ...+ +++|||+|+..++.++ +++||+|++++ +.|.+....+. ..
T Consensus 65 ~~~~~l~~~la~~~g~~--~~~~~i~~~sGt~Ai~~al~al--------~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~ 134 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAE--AGLVRPQIISGTHAISTALFGI--------LRPGDELLYITGKPYDTLEEIVGVRGKGVGS 134 (431)
T ss_dssp HHHHHHHHHHHHHTTCS--EECCBTTSCSHHHHHHHHHHTT--------CCTTCEEEECSSSCCTTHHHHTTSSSCSSSC
T ss_pred hhHHHHHHHHHHHhCCC--cccccceeeCHHHHHHHHHHHh--------CCCCCEEEEeCCCCchhHHHHHhhcccccch
Confidence 45788999999999986 2222 1347899999999876 58999999998 89988655442 11
Q ss_pred HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec----cCCCCcccccHHHHHHHHHH--cCCCE
Q 012991 151 VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH----ITSMPCVVIPVRKLVKICRD--EGVDQ 223 (452)
Q Consensus 151 a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~~ 223 (452)
++..|++++.++. +.++.+ ++++++++ .+++++|++++ +++++|...++++|+++|++ +|+ +
T Consensus 135 ~~~~G~~~~~v~~----~~~~~~d~e~l~~~l------~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~-~ 203 (431)
T 3ht4_A 135 FKEYNIGYNAVPL----TEGGLVDFEAVAAAI------HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDV-V 203 (431)
T ss_dssp SGGGTCEEEECCB----CTTSSBCHHHHHHHC------CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTC-E
T ss_pred HHHcCCEEEEeCC----CCCCCcCHHHHHhhc------CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCC-E
Confidence 2446899999854 333444 89999999 57899999996 44555556678899999999 999 8
Q ss_pred EEEecccccCCccccccccCccEEEEcCcccCcC---CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCc
Q 012991 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFC---PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300 (452)
Q Consensus 224 ~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g---~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (452)
+++|++++.+........+++|+++.|++|+++| +.| |+++.++++++. +.........+.. ..++.
T Consensus 204 livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~-l~~~~~~~~~g~~--------~~~~~ 273 (431)
T 3ht4_A 204 VFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEA-CAYRLTSPGIGAE--------AGASL 273 (431)
T ss_dssp EEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHH-HHHHHSCTTTTTS--------CSCCC
T ss_pred EEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHH-HHHHhccCCcccc--------cCccH
Confidence 9999999987754444456789999999998766 677 999999887765 2110000001100 01111
Q ss_pred cccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-c-cccceEEEEcCCccccCChhhHHHHHH
Q 012991 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-E-ICAAMVMVGLPSRLRVMGEDDALRLRG 378 (452)
Q Consensus 301 ~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (452)
. ....+++.+.. .....++..+++.++.+.|.++ ++++...+ . ....++.+.++ +.....++++
T Consensus 274 ~---~~~~~~~~l~~----~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~------~~~~~~~~~~ 339 (431)
T 3ht4_A 274 Y---SLQEMYQGFFL----APHVAGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFD------DKDRMIAFCQ 339 (431)
T ss_dssp S---CSHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECC------CHHHHHHHHH
T ss_pred H---HHHHHHhHhhh----HHHHHHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeC------CHHHHHHHHH
Confidence 1 11223333332 3445677788899999999987 66653221 1 12336677775 3456778888
Q ss_pred HHhhh
Q 012991 379 HLRVR 383 (452)
Q Consensus 379 ~L~~~ 383 (452)
.|.+.
T Consensus 340 ~l~~~ 344 (431)
T 3ht4_A 340 AIQYA 344 (431)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88653
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=182.89 Aligned_cols=351 Identities=11% Similarity=-0.029 Sum_probs=211.6
Q ss_pred HHHhhhccCCCCeEEeccCC------CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCCC-CC
Q 012991 28 EIRDEFSHHQHGVARINNGS------FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NADD-VG 99 (452)
Q Consensus 28 ~ir~~~~~~~~~~~~l~~~~------~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~-~~ 99 (452)
.+.+.|.....+.|+|..|. -.+.++.|.++........ .. ..|.+..+..++++++++++ |-.. .+
T Consensus 34 ~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~----~~-~~Y~p~~G~p~lr~aia~~~~g~~~~~~ 108 (420)
T 4h51_A 34 DLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMN----LD-YEYLPISGYQPFIDEAVKIIYGNTVELE 108 (420)
T ss_dssp HHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTT----CC-CCCCCTTCCHHHHHHHHHHHHC---CGG
T ss_pred HHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCC----CC-CCCCCcCChHHHHHHHHHHhcCCCcccc
Confidence 34445554445678887773 2255577888877665321 11 12445567788888888875 3211 12
Q ss_pred --cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE-EEEEeCCCCCCChHHH-HH
Q 012991 100 --EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS-VVEVQLPFPLASEEEI-IN 175 (452)
Q Consensus 100 --~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~-~~ 175 (452)
..+.|.|||.|+..++..+.+. ...+||+|++++|.|+++...+.. .|.+ +...+.. . .+...+ .+
T Consensus 109 ~~~~~qt~ggtga~~~a~~~l~~~----~~~pgd~V~ip~P~w~~y~~i~~~----aG~~~V~~~~~~-~-~~~~~~d~~ 178 (420)
T 4h51_A 109 NLVAVQTLSGTGAVSLGAKLLTRV----FDAETTPIYLSDPTWPNHYGVVKA----AGWKNICTYAYY-D-PKTVSLNFE 178 (420)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHTTT----SCTTTSCEEEEESCCTHHHHHHHH----TTCCCEEEEECE-E-GGGTEECHH
T ss_pred ccceeeecCchHHHHHHHHHHHHh----cCCCCCEEEEecCCchhHHHHHHH----cCCeEEEeeccc-c-ccccCCCHH
Confidence 3356899999998888877543 257999999999999987665543 5765 4444321 1 111112 55
Q ss_pred HHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccc-------cccc
Q 012991 176 EFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KID-------VKEI 242 (452)
Q Consensus 176 ~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~-------~~~~ 242 (452)
.+.+.++.. ++++.+++++.++||||..++ +++|+++|+++++ +++.|+++..... ..+ ....
T Consensus 179 ~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~-~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~ 254 (420)
T 4h51_A 179 GMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHH-QVFFDSAYQGYASGSLDTDAYAARLFARRG 254 (420)
T ss_dssp HHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred HHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCc-eEeeehhhhhhccCCcccchHHHHhHHhhC
Confidence 566655543 578889999999999999987 5578999999999 7999998753221 111 1111
Q ss_pred CccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH---HHHHhh
Q 012991 243 GADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT---FVSRFE 317 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~ 317 (452)
..-+++.|++|. ++.+| +|++.+..+..+. ......... ...+.....++...+......+. +...+.
T Consensus 255 ~~~i~~~s~SK~-~~~~G~RvG~~~~~~~~~~~--~~~~~~~l~----~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~ 327 (420)
T 4h51_A 255 IEVLLAQSFSKN-MGLYSERAGTLSLLLKDKTK--RADVKSVMD----SLIREEYTCPPAHGARLAHLILSNNELRKEWE 327 (420)
T ss_dssp CCCEEEEECTTT-SCCGGGCEEEEEEECSCHHH--HHHHHHHHH----HHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHH
T ss_pred ceEEEEeccccc-cccccCceEEEEecccCHHH--HHHHHHHHH----HhhhcccCcchHHHHHHHHHHhcCHHHHHHHH
Confidence 234677899996 78777 8998887665543 000000000 00000112233323322222222 111111
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 318 GGIDGIMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 318 ~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
..++.++++++++++.+.+.|.+... |....++. +.|.+. +.+.++ ++.|. ++||++..
T Consensus 328 ~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~--GmF~~~----------gls~e~-v~~L~-e~~Vy~~~---- 389 (420)
T 4h51_A 328 AELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQI--GMFSFL----------GLSKAQ-CEYCQ-NHNIFITV---- 389 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCC--SSEEEC----------CCCHHH-HHHHH-HTTEECCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCC--ceEEec----------CcCHHH-HHHHH-hCCEEEcC----
Confidence 24678888999999999999988621 22112222 444442 334443 46775 46998731
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.+ |||++.. +.+.|++++++|.+++++-
T Consensus 390 ------------------~g--Ris~Agl-~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 390 ------------------SG--RANMAGL-THETALMLAQTINDAVRNV 417 (420)
T ss_dssp ------------------TC--EEEGGGC-CHHHHHHHHHHHHHHHC--
T ss_pred ------------------CC--EEEeccC-CHHHHHHHHHHHHHHHHHh
Confidence 12 9999753 7889999999999998763
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=178.23 Aligned_cols=352 Identities=16% Similarity=0.130 Sum_probs=221.3
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcE---EEecChhHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPDD-FYF--NSLRKGILESRAAVKDLINADDVGEI---SLVDNATTA 110 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i---~~t~g~t~a 110 (452)
..+.|= ++-...++.|++++...+..-+. +|.. +|+ ...++...-+.++.+++||++ .... +-.-||+.|
T Consensus 55 ~~ieLI-ASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~-~A~w~VNVQP~SGs~A 132 (490)
T 3ou5_A 55 RGLELI-ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD-PAQWGVNVQPYSGSPA 132 (490)
T ss_dssp HSEECC-TTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCC-TTTEEEECCCSSHHHH
T ss_pred cCceEe-cCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCC-ccccCCCCCcCCHHHH
Confidence 344443 45667888899998877654322 2332 222 234556677888999999996 4432 456789999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHH----HHHhcCcEEEEEeCCCCCCC-hHHH-HHHHHHHHhcc
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQA----YVTRAGGSVVEVQLPFPLAS-EEEI-INEFKKGIEKG 184 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~----~a~~~g~~v~~~~~~~~~~~-~~~~-~~~l~~~i~~~ 184 (452)
+..++.++ ++|||+|+..+..|.++...-.. -....|.-+..++. +++. .+.+ ++++++..++
T Consensus 133 N~avy~Al--------l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y--~vd~~t~~IDyd~~~~~A~~- 201 (490)
T 3ou5_A 133 NLAVYTAL--------LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY--KLNPKTGLIDYNQLALTARL- 201 (490)
T ss_dssp HHHHHHHH--------CC-CCCEECBC----------------------------CB--CEETTTTEECHHHHHHHHHH-
T ss_pred HHHHHHHH--------cCCCCEEEecccCCCCcccccccCCCccccccccccccccc--ccCCCCCcccHHHHHHHHhh-
Confidence 99999988 69999999877665554221100 00112333333332 3342 3445 8999998874
Q ss_pred ccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCC
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
.+|++|++-.-. .-..+|++++.+||++.|+ ++++|.+|-.|.+ +-.+. .+|++++|.||+|.||+
T Consensus 202 ----~kPklIi~G~Sa--Y~r~id~~~~reIAd~vGA-~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPr 272 (490)
T 3ou5_A 202 ----FRPRLIIAGTSA--YARLIDYARMREVCDEVKA-HLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGAR 272 (490)
T ss_dssp ----HCCSEEEECCSS--CCSCCCHHHHHHHHHHHTC-EEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCS
T ss_pred ----cCCCeEEECCcc--CccccCHHHHHHHHhhccc-EEEechhhhhhhhcccccCCccc--cceEEeccccccccCCC
Confidence 689999995544 4568899999999999999 8999999976543 32332 38999999999999999
Q ss_pred CcEEEEEecCcccc----------CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSS----------DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 260 G~G~l~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
| |+++++++.... ++...+-..-|++ ..|.|....+++...++.....- .++.+.+++.+
T Consensus 273 G-G~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg-------~qggp~~h~IAAkAVaf~Ea~~p--~fk~Ya~qVv~ 342 (490)
T 3ou5_A 273 S-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS-------LQGGPHNHAIAAVAVALKQACTP--MFREYSLQVLK 342 (490)
T ss_dssp C-EEEEEECSEEEECC--CCEEECCCHHHHHHHHTTT-------TCSSCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHH
T ss_pred c-eEEEeccccccccccccchhHHHHHHHHHhhcCcc-------ccccchHHHHHHHHHHHHHHHhH--hHHHHHHHHHH
Confidence 8 999998764321 0000000000111 11445555556655555543322 57888999999
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++.|.+.|.+. |+.++... ...+.+++.+.. .+.+.++..+.|.+ .||.+..-..+....
T Consensus 343 NAkaLA~~L~~~-G~~vvsGg-TdnHlvLvDl~~-----~g~tG~~ae~~Le~-agItvNkN~iP~D~s----------- 403 (490)
T 3ou5_A 343 NARAMADALLER-GYSLVSGG-TDNHLVLVDLRP-----KGLDGARAERVLEL-VSITANKNTCPGDRS----------- 403 (490)
T ss_dssp HHHHHHHHHHHT-TCEEGGGS-CSSSEEEEECGG-----GTCCHHHHHHHHHH-TTEECEEECCTTCCC-----------
T ss_pred HHHHHHHHHHhC-CCeeecCC-CCceEEEEeccc-----cCCCHHHHHHHHHH-cCcEECCCCCCCCCC-----------
Confidence 999999999987 88876532 336788887642 24567777777754 699985433332111
Q ss_pred CCccceEEecccccC----CHHHHHHHHHHHHHHHh
Q 012991 410 GIITGYARISHQVYN----TLEDYEKFRDAVILLVE 441 (452)
Q Consensus 410 ~~~~~~iRis~~~~~----t~~di~~l~~~l~~~~~ 441 (452)
...++.|||+....+ +++|++++.+.|.+++.
T Consensus 404 p~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 404 AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 244678999986554 47899999999988775
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=173.02 Aligned_cols=327 Identities=10% Similarity=0.076 Sum_probs=204.4
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.|.+++.+.+.... .... ......++.+.|++.+.. .+.+.|++|||+|++.++.. +|.+
T Consensus 101 lGH~hp~v~~Av~~q~~~~~----~~~~--~~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~Aikl-Ar~~----- 166 (454)
T 4ao9_A 101 YGHSAPEIRDAVIEAMQGGI----NLTG--HNLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTA-ALHF----- 166 (454)
T ss_dssp TCSCCHHHHHHHHHHHHTCS----CCCS--EESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHH-HHHH-----
T ss_pred ccCCCHHHHHHHHHHHhcCC----CccC--CcHHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHH-HHhc-----
Confidence 45677789999988775421 1111 123345678888988864 47999999999999999984 4443
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhc--CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRA--GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
..+++|+....+|++............ ...+..+ |.++ .+.+++.+++. .+++++|+++......|.
T Consensus 167 tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~----p~nd----~~~l~~~l~~~---~~~iAavIvEPv~g~~G~ 235 (454)
T 4ao9_A 167 TGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL----PYND----AQTARAQIERH---GPEIAVVLVEPMQGASGC 235 (454)
T ss_dssp HTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE----CTTC----HHHHHHHHHHT---GGGEEEEEECSEESTTTC
T ss_pred ccCCeEEEEeCCcCCccccccccccCccCCCCcccC----CCch----HHHHHHHHhhc---CCceEEEEeccccCCCCc
Confidence 345789998888887432211000000 1233333 3333 57777777654 467899999999999999
Q ss_pred ccc----HHHHHHHHHHcCCCEEEEecccccCCccc----cccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC
Q 012991 206 VIP----VRKLVKICRDEGVDQVFVDAAHAMGSIKI----DVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277 (452)
Q Consensus 206 ~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~~~----~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~ 277 (452)
+.| +++|.++|++||+ ++|+|++++ |-... ......+|+++++ |.++|+..+|.+.+++++.+. + .
T Consensus 236 ~~p~~~fL~~lr~lc~~~g~-lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~ei~~~-~-~ 309 (454)
T 4ao9_A 236 IPGQPDFLQALRESATQVGA-LLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRADVMAL-F-D 309 (454)
T ss_dssp EECCHHHHHHHHHHHHHHTC-EEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHGG-G-C
T ss_pred cCCchhhHHHHHHHHhhcCC-EEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHHHHHH-H-h
Confidence 987 8899999999999 899999987 42211 1123358998877 877776668999999988875 2 2
Q ss_pred CceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCCcccccce
Q 012991 278 PVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSLGSPPEICAAM 356 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~ 356 (452)
+.... ..+.+|-+. .-+++.+++..++.+ ..+.+.+++.++.++|++.|.++.. ..+.......+.+
T Consensus 310 ~~~~~---------~~h~~T~~g-nPla~AAala~L~~l--~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m 377 (454)
T 4ao9_A 310 PRTGP---------LAHSGTFNN-NVMTMAAGYAGLTKL--FTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSL 377 (454)
T ss_dssp TTTCS---------CCCCCTTTT-CHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTE
T ss_pred hccCC---------ccccCCCCC-CHHHHHHHHHHHHHH--hccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceE
Confidence 21000 001122221 223344455555443 2356778888888999888876521 1222222233556
Q ss_pred EEEEcCCc--ccc-----CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 357 VMVGLPSR--LRV-----MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 357 ~~~~~~~~--~~~-----~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
+.+.+-+. ... .+..-...+...|.++ ||++++ .+.+.+++. +|++||
T Consensus 378 ~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p----------------------~~~~~~s~~--~T~~dI 432 (454)
T 4ao9_A 378 MNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSP----------------------RGFVVLSLP--LTDADI 432 (454)
T ss_dssp EEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCT----------------------TCEEECCTT--CCHHHH
T ss_pred EEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcC----------------------CCCEEEeCC--CCHHHH
Confidence 66554211 000 0111224566667665 999741 134555555 599999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
|++++++++++.+
T Consensus 433 d~~l~al~~~l~~ 445 (454)
T 4ao9_A 433 DRYVAAIGSFIGG 445 (454)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-17 Score=165.53 Aligned_cols=342 Identities=15% Similarity=0.155 Sum_probs=214.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+... .+... .....+...++.++|++++..+..+.++|++|||+|++.++. ++|.+
T Consensus 77 ~lGh~~p~v~~Ai~~q~~~~-~~~~~--~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~Alk-lAr~~---- 148 (456)
T 4atq_A 77 SVGASDPAVVAAVQEAAAHF-THTCF--MVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVK-VARLA---- 148 (456)
T ss_dssp TTCTTCHHHHHHHHHHHHHC-SCCTT--TTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHH-HHHHH----
T ss_pred hcCCCCHHHHHHHHHHHhhc-cCccc--CccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHH-HHhhh----
Confidence 45677788999999887653 11111 122234456778888998875434688999999999999998 45544
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh-----c-----CcEEEEEeCCCCCC------ChHHH----HHHHHHHHhcccc
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR-----A-----GGSVVEVQLPFPLA------SEEEI----INEFKKGIEKGKK 186 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~-----~-----g~~v~~~~~~~~~~------~~~~~----~~~l~~~i~~~~~ 186 (452)
..+.+|+....+||+.......+... . ...+..+|.+.+.. .+... .+.+++.+.
T Consensus 149 -t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---- 223 (456)
T 4atq_A 149 -TGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIG---- 223 (456)
T ss_dssp -HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTC----
T ss_pred -hcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhc----
Confidence 44678999999988865443221100 0 12344554432211 11111 233333331
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCcc----ccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
..++.+|+++......|.+.| +++|.++|++||+ ++|+|+++.. |-.. .+.....+|+++++ |.++|
T Consensus 224 -~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gi-llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lgg 299 (456)
T 4atq_A 224 -GDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGI-VFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAG 299 (456)
T ss_dssp -GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGT
T ss_pred -CCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCC-ceEecccccccCCccccccccccCCCCchhhhh--hcccC
Confidence 457899999999888898866 8899999999999 9999999864 3221 22223458999887 77776
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
...+|.+++++++.+. + .+.. . ..+|.| +..+..+..++++.+.+ +.+.++.+++.+++.+.
T Consensus 300 g~P~~av~~~~~i~~~-~-~~~~---~------~~Tf~g--npla~aaala~L~~i~~-----~~l~~~~~~~g~~l~~~ 361 (456)
T 4atq_A 300 GLPLSAITGRADLLDA-V-HPGG---L------GGTYGG--NPVACAAALAAIDTMEQ-----HDLNGRARHIEELALGK 361 (456)
T ss_dssp TSSCEEEEEEHHHHTT-S-CTTS---S------CCSSSS--CHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHH
T ss_pred cCCceeeEecHHHHhc-c-cccC---C------CCCCCC--ChHHHHhhHHHHHHHhh-----ccHHHHHHHHHHHHHHH
Confidence 6668999999988775 2 2210 0 111122 22233334445555553 34577778888888888
Q ss_pred HHHHcC-C-----CcCCCcccccceEEEEcCCc-cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 338 LANAWG-T-----SLGSPPEICAAMVMVGLPSR-LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 338 L~~~~~-~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
|.++.. + .++......+.++.+.+.+. ....+..-...+.+.+.++ |+.+....
T Consensus 362 L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~-Gvl~~~~g------------------ 422 (456)
T 4atq_A 362 LRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCG------------------ 422 (456)
T ss_dssp HHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECEEEC------------------
T ss_pred HHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHC-CCEEEecC------------------
Confidence 776521 1 12222223466766665321 1111122346788888775 99875321
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++.||+.+....|++||++++++|.+.++.
T Consensus 423 ~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 423 TYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 23468999999888999999999999999864
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=157.93 Aligned_cols=353 Identities=11% Similarity=0.091 Sum_probs=213.8
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.+.+++.+.+...... +..+. ...+...++.++|+++.+.+ .+.+.|++|||+|++.++. ++|+|....-
T Consensus 81 lGh~~p~v~~Ai~~q~~~l~~~-~~~~~-~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiK-lAr~~~~~~g 156 (473)
T 4e3q_A 81 AGFDHKGLIDAAKAQYERFPGY-HAFFG-RMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVK-MLWFLHAAEG 156 (473)
T ss_dssp TCSCCHHHHHHHHHHHHHCCCC-CCCTT-EEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHH-HHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHHhcccc-ccccc-ccCHHHHHHHHHHHhhCCCC-ccEEEEeCchHHHHHHHHH-HHHHHHHhcC
Confidence 3567788999999887764211 11111 12344566888899988764 5799999999999999998 4454432222
Q ss_pred CC-CCEEEEeCCcchhHHHHHHHHHH-----hcC---cEEEEEeCCC------CCCChHHH----HHHHHHHHhccccCC
Q 012991 128 HR-NDTVLMLHCAFQAVKKSIQAYVT-----RAG---GSVVEVQLPF------PLASEEEI----INEFKKGIEKGKKDG 188 (452)
Q Consensus 128 ~~-g~~Vl~~~~~~~s~~~~~~~~a~-----~~g---~~v~~~~~~~------~~~~~~~~----~~~l~~~i~~~~~~~ 188 (452)
++ ..+|+....+|++.......+.. ..+ ..+..++.+. ..+....+ .+++++.+.+. ..
T Consensus 157 ~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~ 234 (473)
T 4e3q_A 157 KPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE--GA 234 (473)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH--CG
T ss_pred CCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhh--CC
Confidence 33 45788888888875443322110 001 1223333210 11111111 46667766542 13
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCcc----ccccccCccEEEEcCcccCcCC-
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIK----IDVKEIGADFYVSNLHKWFFCP- 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~----~~~~~~~~d~~~~s~~K~l~g~- 258 (452)
+++++|+++......|.+.| +++|.++|++||+ ++|.|+++.. |-.. .+.....+|+++++ |.+.|+
T Consensus 235 ~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gi-lLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~ 311 (473)
T 4e3q_A 235 DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDI-PVISDEVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGF 311 (473)
T ss_dssp GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-CEEEECTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTS
T ss_pred CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccce-EEeccCccccCCcccchhHHHhcCCCCChHHhc--ccccCCC
Confidence 57899999999988898876 7899999999999 8999999863 3221 12223468999887 877665
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|.+++++++.+. +...... . .......++.| +..+..+..++++.+.+ +.+.++.+++..+|.+.|
T Consensus 312 ~Pl~av~~~~~i~~~-~~~~~~~--~-~~~~hg~T~~G--npla~Aaala~L~~i~~-----~~l~~~~~~~g~~l~~~L 380 (473)
T 4e3q_A 312 FPMGAVILGPELSKR-LETAIEA--I-EEFPHGFTASG--HPVGCAIALKAIDVVMN-----EGLAENVRRLAPRFEERL 380 (473)
T ss_dssp SCCEEEEECHHHHHH-HHHHHHH--H-SCCCCCCTTTT--CHHHHHHHHHHHHHHHH-----SSHHHHHHHHHHHHHHHH
T ss_pred CCcccccccHHHHHH-hcccccc--c-cccccCCCCCC--Ccchhhhhhhhhhhhcc-----ccHHHHHHHHHHHHHHHH
Confidence 458999999888764 1000000 0 00000111112 11222233334455443 456778888999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccC-----ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVM-----GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.++.....+......+.++.+.+-...... +..-...+.+.+.++ |+.+.. .+
T Consensus 381 ~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~---------------------~g 438 (473)
T 4e3q_A 381 KHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-GLICRP---------------------LG 438 (473)
T ss_dssp HHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEE---------------------ET
T ss_pred HHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHC-CcEEEe---------------------cC
Confidence 887432222222234566666542110100 011245688888775 998852 13
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+|++++...|++|++.+++++++.+++
T Consensus 439 ~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 439 QSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 58999998888999999999999998865
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-20 Score=183.07 Aligned_cols=329 Identities=11% Similarity=0.037 Sum_probs=202.5
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
|..++.|.+++.+.+.... . + ..+.+...++.++|+++++ . .+.++|++||++|+..++..+ | ...
T Consensus 115 Gh~~p~V~~Av~~q~~~~~---~--~-~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~a-r-----~~t 180 (465)
T 2yky_A 115 GHSHPVIRAAVERALAVGL---N--L-STQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATA-T-----AIT 180 (465)
Confidence 4556779999988765421 1 1 1235567889999999985 2 468999999999999998854 2 124
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
.+++|++.+..|++.......-....|+....+.. +.+ .++.|++++++. .+++++|+++...+++|.+.|
T Consensus 181 gr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~--~~~----d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~ 251 (465)
T 2yky_A 181 GRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLG--VYN----DVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPA 251 (465)
Confidence 56899999999887544322000112331111111 221 167888888532 267899999887777998877
Q ss_pred ----HHHHHHHHHHcCCCEEEEecccccCCcc----ccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCce
Q 012991 209 ----VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVV 280 (452)
Q Consensus 209 ----l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~ 280 (452)
+++|.++|++||+ ++|+|++++ +... .+.....+|++ +++|+++++..+|++++++++++. + .+..
T Consensus 252 ~~~~l~~l~~l~~~~g~-llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~-l-~~~~ 325 (465)
T 2yky_A 252 ERAFLDLLRAEASRCGA-LLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMER-F-DPAR 325 (465)
Confidence 8999999999999 799999998 5221 11112246765 567987664447999999988875 2 2200
Q ss_pred eccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCCcccccceEEE
Q 012991 281 SHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GTSLGSPPEICAAMVMV 359 (452)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~ 359 (452)
.+ . .....+.+.+...+.+..++++.+.+ +.+.+++.++.+++++.|.++. ...+.......+.++++
T Consensus 326 ---~g-~--~~~~~T~~~npla~aAa~aaL~~l~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i 394 (465)
T 2yky_A 326 ---DG-A--FAHAGTFNNNILTMSAGHAALTQIYT-----RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTI 394 (465)
Confidence 00 0 00000112233344444556666653 3467788888888888887652 12222222234677777
Q ss_pred EcCCcc--ccC-----ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHH
Q 012991 360 GLPSRL--RVM-----GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 360 ~~~~~~--~~~-----~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l 432 (452)
.+++.. ... +......+.+.|.++ ||.+.+... +. ++ ..+|++||+++
T Consensus 395 ~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-GV~v~p~~~--------------------~~--~s--~~~t~edid~~ 449 (465)
T 2yky_A 395 HFSRAPIRSAGDVRAADQQLKELFFFHMLRK-GIYLAPRGM--------------------YA--LS--LEIADAGRDAF 449 (465)
Confidence 664200 000 011245688888765 999853221 11 33 44699999999
Q ss_pred HHHHHHHHhc
Q 012991 433 RDAVILLVEE 442 (452)
Q Consensus 433 ~~~l~~~~~~ 442 (452)
+++|+++++.
T Consensus 450 l~~l~~~l~~ 459 (465)
T 2yky_A 450 AEALADFIGE 459 (465)
Confidence 9999998864
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=158.74 Aligned_cols=354 Identities=12% Similarity=0.080 Sum_probs=200.7
Q ss_pred CCCCC-cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccC
Q 012991 47 SFGSC-PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG 125 (452)
Q Consensus 47 ~~~~~-p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~ 125 (452)
..|.. .+.+.+++.+.+..+. +.. +.....+...++.++|+++++.+..+.++|++||++|++.++....++|...
T Consensus 393 ~lGh~~~p~i~~Ai~~Q~~~l~-h~~--~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~ 469 (831)
T 4a0g_A 393 GPDPTFQAELAREMGYTAARFG-HVM--FPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVD 469 (831)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHS-SCC--CTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHhhcc-ccc--ccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhh
Confidence 34555 6679999998887652 211 1111234456788999999874324689999999999999998653544321
Q ss_pred CCC---------CCCEEEEeCCcchhHHHHHHHHHHh----c--------CcEE-------------EEEeCCCC-----
Q 012991 126 RFH---------RNDTVLMLHCAFQAVKKSIQAYVTR----A--------GGSV-------------VEVQLPFP----- 166 (452)
Q Consensus 126 ~~~---------~g~~Vl~~~~~~~s~~~~~~~~a~~----~--------g~~v-------------~~~~~~~~----- 166 (452)
.-. ...+||..+..|++.......+... . +..+ ..++.+..
T Consensus 470 ~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~ 549 (831)
T 4a0g_A 470 HNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIA 549 (831)
T ss_dssp TTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCC
T ss_pred cCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccc
Confidence 111 1347888888888755444322110 0 1111 11222110
Q ss_pred -----CCCh--------------HHHHHHHHHHHhccc--cCCCceEEEEEecc-CCCCccccc----HHHHHHHHHHcC
Q 012991 167 -----LASE--------------EEIINEFKKGIEKGK--KDGKMIRLAIIDHI-TSMPCVVIP----VRKLVKICRDEG 220 (452)
Q Consensus 167 -----~~~~--------------~~~~~~l~~~i~~~~--~~~~~~~lv~~~~~-~n~tG~~~~----l~~i~~l~~~~~ 220 (452)
.++. ....+.|++.+++.. ....++++|+++.. .+..|.+.+ +++|.++|++||
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~g 629 (831)
T 4a0g_A 550 PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRK 629 (831)
T ss_dssp SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTT
T ss_pred cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcC
Confidence 0010 011467777775311 11457899999986 788888875 889999999999
Q ss_pred CCEEEEecccc-cCCccc----cccccCccEEEEcCcccCcCC-CCcEEEEEecCccccCCCCCceeccCCCCccccccc
Q 012991 221 VDQVFVDAAHA-MGSIKI----DVKEIGADFYVSNLHKWFFCP-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAW 294 (452)
Q Consensus 221 ~~~~ivD~a~~-~g~~~~----~~~~~~~d~~~~s~~K~l~g~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (452)
+ ++|+|+++. +|-... +.....+|+++++ |.+.|+ ..+|++++++++.+. +........+. ...
T Consensus 630 i-lLI~DEV~tGfGRtG~~fa~e~~gv~PDiitls--K~L~gG~~Plgav~~~~~i~~~-~~~~~~~~~~~----hg~-- 699 (831)
T 4a0g_A 630 I-PVIFDEVFTGFWRLGVETTTELLGCKPDIACFA--KLLTGGMVPLAVTLATDAVFDS-FSGDSKLKALL----HGH-- 699 (831)
T ss_dssp C-CEEEECTTTTTTTTSBSSTHHHHSSCCSEEEEC--GGGGTTSSCCEEEEECHHHHHT-TCSSCGGGSCC----CCC--
T ss_pred C-eEEEEcCccccccCCCchhhHhcCCCCcEEEEe--cccccCccCcEEEEECHHHHHH-Hhcccccccce----eec--
Confidence 9 799999876 433221 1112357888655 987664 247999999888775 22110000000 000
Q ss_pred ccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH--------HHHHHHHHHcCCCcCCCcccccceEEEEcCCccc
Q 012991 295 IGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL--------KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR 366 (452)
Q Consensus 295 ~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~--------~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (452)
+.+.+..+..+..++++.+.+. + +.++..++.+ .+.+.+.+.+.+. .....+.++.+.+.....
T Consensus 700 T~~g~Pla~Aaala~L~~i~~~--~---l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~---~vrg~Gl~~~iel~~~~~ 771 (831)
T 4a0g_A 700 SYSAHAMGCATAAKAIQWFKDP--E---TNHNITSQGKTLRELWDEELVQQISSHSAVQ---RVVVIGTLFALELKADAS 771 (831)
T ss_dssp TTTTCHHHHHHHHHHHHHHHCT--T---TCTTBCTTSSBBCCCSCHHHHHHHHHSTTEE---EEEEETTEEEEEEC----
T ss_pred CCcccHHHHHHHHHHHHHHHhh--H---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCce---eEeecccEEEEEEecCcc
Confidence 1112222333444556655531 2 2222222222 2334444443322 222335666666631100
Q ss_pred c--CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 367 V--MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 367 ~--~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
. .+...+.++.+.|.++ ||.+++ .++.||++++..+|++||++++++|++++++-
T Consensus 772 ~~~~~~~~a~~~~~~l~e~-Gv~v~p---------------------~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 772 NSGYASLYAKSLLIMLRED-GIFTRP---------------------LGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp -----CHHHHHHHHHHHHT-TEECCC---------------------BTTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ccccchHHHHHHHHHHHHC-CcEEEe---------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 0 0112456788888775 999852 13689999888889999999999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 452 | ||||
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 2e-15 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 3e-15 | |
| d1qz9a_ | 404 | c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen | 1e-13 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 9e-12 | |
| d1eg5a_ | 376 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 4e-10 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 7e-10 | |
| d1t3ia_ | 408 | c.67.1.3 (A:) Probable cysteine desulfurase SufS { | 6e-08 | |
| d1vjoa_ | 377 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 1e-06 | |
| d1m32a_ | 361 | c.67.1.3 (A:) 2-aminoethylphosphonate transaminase | 2e-06 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 1e-05 | |
| d2bkwa1 | 382 | c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe | 8e-05 | |
| d1elua_ | 381 | c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst | 9e-05 | |
| d1h0ca_ | 388 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 2e-04 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 3e-04 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 3e-04 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 75.3 bits (184), Expect = 2e-15
Identities = 65/426 (15%), Positives = 132/426 (30%), Gaps = 49/426 (11%)
Query: 27 AEIRDEF---SHHQHGVARI--NNGSFGSCPKSVLADQQKWQLKFLQQP---DDFYFNSL 78
++R +F S +G+ ++ + P V+ + ++
Sbjct: 5 DKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQA 64
Query: 79 RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHC 138
+ + R INA E+ V T + + + D +++
Sbjct: 65 TEKMENVRKRASLFINARSAEELVFVRGTTEG----INLVANSWGNSNVRAGDNIIISQM 120
Query: 139 AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDH 198
A Q R G + + PL + + E + K RL I H
Sbjct: 121 EHHANIVPWQMLCARVGAELRVI----PLNPDGTLQLETLPTLFDEK-----TRLLAITH 171
Query: 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCP 258
++++ P+ +++ + G +V VD A A+ +DV+ + DFYV + HK +
Sbjct: 172 VSNVLGTENPLAEMITLAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPT 230
Query: 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAW--------IGTRDYSAQLVIPSAV 310
+ S L + W GT + + + +A+
Sbjct: 231 GIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAAL 290
Query: 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE 370
+V G++ I + + A + P+ ++ L +
Sbjct: 291 EYV--SALGLNNI-AEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLG---KHHAY 344
Query: 371 DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYE 430
D L +G+ V G A + R S +YNT E+ +
Sbjct: 345 DVGSFLD-----NYGIAVR--------TGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD 391
Query: 431 KFRDAV 436
+ +
Sbjct: 392 RLVTGL 397
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 74.6 bits (182), Expect = 3e-15
Identities = 58/368 (15%), Positives = 117/368 (31%), Gaps = 40/368 (10%)
Query: 79 RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHC 138
+ + +R + DL+ AD EI AT + + ++ G + ++
Sbjct: 47 EEAVDIARNQIADLVGADP-REIVFTSGATESDNLAIK----GAANFYQKKGKHIITSKT 101
Query: 139 AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDH 198
+AV + + + R G V + P + + E + + L I H
Sbjct: 102 EHKAVLDTCR-QLEREGFEVTYLA---PQRNGIIDLKELEAAMRDD------TILVSIMH 151
Query: 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCP 258
+ + VV + + ++CR G+ VDA ++G + ID+ ++ D + HK + P
Sbjct: 152 VNNEIGVVQDIAAIGEMCRARGII-YHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-GP 209
Query: 259 PSVAFLYCRKSILSSDMHHPV---VSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR 315
+ LY R+ +G +G +
Sbjct: 210 KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE-------- 261
Query: 316 FEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALR 375
+ M+R ++ + + L E A ++ S V GE +
Sbjct: 262 ----MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILN--VSFNYVEGESLIMA 315
Query: 376 LRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD-KDGIITGYARISHQVYNTLEDYEKFRD 434
L+ V + + A D + R S + T E+ + +
Sbjct: 316 LKD-----LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIE 370
Query: 435 AVILLVEE 442
V +
Sbjct: 371 LVRKSIGR 378
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Score = 70.1 bits (170), Expect = 1e-13
Identities = 53/425 (12%), Positives = 118/425 (27%), Gaps = 47/425 (11%)
Query: 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLR--KGILE 84
A +R +F GV ++ S G+ P + LA Q + +NS
Sbjct: 16 APLRQQF-ALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSER 74
Query: 85 SRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVK 144
+ LI A D GE+ + D + + + V++ +
Sbjct: 75 LGNRLATLIGARD-GEVVVTDTTSI--NLFKVLSAALRVQATRSPERRVIVTETSNFPTD 131
Query: 145 KSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204
I + ++L + I++ + ++ H+
Sbjct: 132 LYIAEGLADMLQQGYTLRLVDSPEELPQAIDQD-------------TAVVMLTHVNYKTG 178
Query: 205 VVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFL 264
+ ++ + E D AH+ G++ +D+ + GAD+ + +K+ P
Sbjct: 179 YMHDMQA-LTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAF 237
Query: 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIM 324
L + P G + A + S + T ++ +
Sbjct: 238 VWVSPQLCDLVPQP---LSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGL 294
Query: 325 QRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRF 384
+ + R + A + L ++ + + H+
Sbjct: 295 DVFAQTDMASLRRKSLAL------TDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH 348
Query: 385 GVEVPIHYQAPKDDGQPQAGARDKDGIIT-----GYARIS-HQVYNTLEDYEKFRDAVIL 438
+G A G+I R +Y T + +
Sbjct: 349 ------------PEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGE 396
Query: 439 LVEEG 443
+++
Sbjct: 397 ILDRK 401
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 64.2 bits (155), Expect = 9e-12
Identities = 37/375 (9%), Positives = 101/375 (26%), Gaps = 54/375 (14%)
Query: 69 QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128
QP + + + + + + +T + + R + +
Sbjct: 102 QPKASGASIMYALTNKILESFFKQLGLNVHA--IATPISTGMSISLCLSAAR-----KKY 154
Query: 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDG 188
++ V+ + + ++ K++ G ++ V+ + + + I+K + G
Sbjct: 155 GSNVVIYPYASHKSPIKAVSFV----GMNMRLVETVLDGDRVYVPVEDIENAIKKEIELG 210
Query: 189 KMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID-----VKEIG 243
+ + P + ++ KIC + + ++ A+A+ + +
Sbjct: 211 NRPCV-LSTLTFFPPRNSDDIVEIAKICENYDI-PHIINGAYAIQNNYYLEKLKKAFKYR 268
Query: 244 ADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQ 303
D VS+ K P +Y + + + P+ + + ++
Sbjct: 269 VDAVVSSSDKNLLTPIGGGLVYSTDAEFI--KEISLSYPGRASATPVVNTLVSLLSMGSK 326
Query: 304 LVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML---ANAWGTSLGSPPEICAAMVMVG 360
+++ + +L + G
Sbjct: 327 ---------------NYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVES--------- 362
Query: 361 LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420
P + D + + L V P + G G D Y ++
Sbjct: 363 -PIASCISVNSDPVEIAAKLYNL-RVTGPRGIKKTDHFGNCYLGTYTHD-----YIVMNA 415
Query: 421 QVYNTLEDYEKFRDA 435
+ ED
Sbjct: 416 AIGVRTEDIVNSVSK 430
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Score = 58.9 bits (141), Expect = 4e-10
Identities = 60/398 (15%), Positives = 128/398 (32%), Gaps = 39/398 (9%)
Query: 44 NNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSL--RKGILESRAAVKDLINADDVGEI 101
+N + VL + + + P+ + + + ++R V ++ EI
Sbjct: 6 DNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSP-SEI 64
Query: 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEV 161
AT + +L+ + F + + T + + +K Y++ G V V
Sbjct: 65 FFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-----YLSMKGFKVKYV 119
Query: 162 QLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEG 220
P+ S + + E +K +++ L I + + PV + +I + +
Sbjct: 120 ----PVDSRGVVKLEELEKLVDEDTF------LVSIMAANNEVGTIQPVEDVTRIVKKKN 169
Query: 221 VDQ-VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPV 279
+ V VDA +G I ++++ D+ + HK+ + + +H
Sbjct: 170 KETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGG 229
Query: 280 VSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339
+G +G V + + + + A + +
Sbjct: 230 QERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI 289
Query: 340 NAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399
+ T S P I + + + L G + V + +
Sbjct: 290 SLPNTLSVSFPNIRGSTLQ-------------NLLSGYG-IYVSTS----SACTSKDERL 331
Query: 400 QPQAGARDKD-GIITGYARISHQVYNTLEDYEKFRDAV 436
+ A D I G RIS YNT E+ + F +
Sbjct: 332 RHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKI 369
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.4 bits (140), Expect = 7e-10
Identities = 62/464 (13%), Positives = 116/464 (25%), Gaps = 51/464 (10%)
Query: 4 EARNG--ELTHHVSKKPKL-TRCISEAEIRDEFS--HHQHGVARINNGSFGSCPKSVLAD 58
EAR L + ++ K E+ + + N G V +
Sbjct: 1 EARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASA 60
Query: 59 QQKWQLKFL------------QQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDN 106
+ QP + L K V L V +V
Sbjct: 61 LVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPM 120
Query: 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFP 166
AT + + R + + ++ ++ KS+ AG V ++
Sbjct: 121 ATGMSLTLCFLTLRH----KRPKAKYIIWPRIDQKSCFKSMVT----AGFEPVVIE---N 169
Query: 167 LASEEEIINEFKKGIEKGKKDGKM-IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVF 225
+ +E+ + K K ++ G I P V + +L IC + +
Sbjct: 170 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDI-PHV 228
Query: 226 VDAAHAMGSIKIDVKEI------GADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPV 279
V+ A+ + S K D +V +L K F P A + D+
Sbjct: 229 VNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK-- 286
Query: 280 VSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339
+ + P I F + + ++ +
Sbjct: 287 MYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPH 346
Query: 340 NAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399
N AM + + L R G G
Sbjct: 347 NPI----------SLAMTLKTIDGHHDKAVTQLGSML--FTRQVSGARAVPLGNVQTVSG 394
Query: 400 QPQAG-ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442
G D Y + + ++D + F + +
Sbjct: 395 HTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 438
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 52.3 bits (124), Expect = 6e-08
Identities = 69/432 (15%), Positives = 131/432 (30%), Gaps = 48/432 (11%)
Query: 27 AEIRDEF---SHHQHGVARI--NNGSFGSCPKSVLADQQKWQLKFLQQP---DDFYFNSL 78
A +R +F + +G + +N + P++VL +
Sbjct: 5 ATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRA 64
Query: 79 RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHC 138
R V INA EI NAT A +V + D ++
Sbjct: 65 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVA----YSWGMNNLKAGDEIITTVM 120
Query: 139 AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDH 198
+ Q + G + VQL + + E + +L + H
Sbjct: 121 EHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS---------EKTKLVTVVH 171
Query: 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCP 258
I++ V P ++ ++ G +V VDA + +DV+ I D+ V++ H P
Sbjct: 172 ISNTLGCVNPAEEIAQLAHQAG-AKVLVDACQSAPHYPLDVQLIDCDWLVASGH-KMCAP 229
Query: 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAW--------IGTRDYSAQLVIPSAV 310
+ FLY ++ IL + GT + + + +AV
Sbjct: 230 TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAV 289
Query: 311 TFVSRFE-GGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMG 369
+++ I + + AA+ + +
Sbjct: 290 DYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG---LHA 346
Query: 370 EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429
D A + + G+ + G + +G AR S YNT E+
Sbjct: 347 SDVATMVD-----QDGIAIR--------SGHHCTQPLHRLFDASGSARASLYFYNTKEEI 393
Query: 430 EKFRDAVILLVE 441
+ F ++ +
Sbjct: 394 DLFLQSLQATIR 405
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 37/359 (10%), Positives = 85/359 (23%), Gaps = 47/359 (13%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAV 143
E ++ ++ + ++ I++ T A +
Sbjct: 55 EIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGR 114
Query: 144 KKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMP 203
+ +++ G V ++ + H +
Sbjct: 115 YGADVRTISKPWGEVFSLEELRTALETHRPAILA------------------LVHAETST 156
Query: 204 CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
P+ + ++CR+ G + VD ++G + I + G D S K C P +
Sbjct: 157 GARQPLEGVGELCREFGTL-LLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASP 215
Query: 264 LYCRKSILSSDMH-----HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEG 318
+ G S + L +
Sbjct: 216 FTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE 275
Query: 319 GIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRG 378
G+ QR+ + + L + + + V +P + D +
Sbjct: 276 GLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGV------DGKAVAR 329
Query: 379 HLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ-VYNTLEDYEKFRDAV 436
L +EV R+ + E ++ A+
Sbjct: 330 RLLNEHNIEVGGGLGELAG----------------KVWRVGLMGFNSRKESVDQLIPAL 372
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 48/359 (13%), Positives = 102/359 (28%), Gaps = 47/359 (13%)
Query: 84 ESRAAVKDLINA-DDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQA 142
+ R + L A + + L + + A VL + N
Sbjct: 37 QIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG 96
Query: 143 VKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSM 202
+ + +VQ + + + I+ + H +
Sbjct: 97 LMGIAHHAYDCGEVARPDVQAIDAILNADPTISHI-----------------AMVHSETT 139
Query: 203 PCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVA 262
++ P+ ++ + G VDA + G I +D+ + D+ +S+ +K P A
Sbjct: 140 TGMLNPIDEVGALAHRYGK-TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFA 198
Query: 263 FLYCRKSILSSDMHHPV-----VSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFE 317
F+ R+ L++ H + ++ W T L A+ +++ E
Sbjct: 199 FVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK-E 257
Query: 318 GGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLR 377
GG+ QR + + + +L + P + + RL+
Sbjct: 258 GGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLK 317
Query: 378 GHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAV 436
G + G + RI + D A+
Sbjct: 318 EQ-----GFVIY-------------PGKVSQSDCF----RIGNIGEVYAADITALLTAI 354
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 38/317 (11%), Positives = 77/317 (24%), Gaps = 22/317 (6%)
Query: 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQ 141
+ + + NAD ++ ++ A V + F RN+ + + A
Sbjct: 68 AVAAEKHAARVYNADKT--YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALA 125
Query: 142 AVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITS 201
T + E++I K + K + RLA+I + +
Sbjct: 126 MAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVI-QLGT 184
Query: 202 MPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDV-------------KEIGADFYV 248
+ ++VK D + D+A I + E V
Sbjct: 185 YDGTIYNAHEVVKRIGHLC-DYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVV 243
Query: 249 SNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308
++HK S +K F N + +
Sbjct: 244 QSVHKQ-QAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFN----LFMSTSPFYPMYAAL 298
Query: 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVM 368
V + + ++ + L A P + +
Sbjct: 299 DVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMAN 358
Query: 369 GEDDALRLRGHLRVRFG 385
D +G +
Sbjct: 359 NIDYWRFEKGAKWHAYE 375
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.4 bits (98), Expect = 8e-05
Identities = 49/378 (12%), Positives = 92/378 (24%), Gaps = 42/378 (11%)
Query: 75 FNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVL 134
F S+ + +L++ AV A L + T I V
Sbjct: 34 FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPN--KNVLVVS 91
Query: 135 MLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194
+ + +++ PL E +++ G
Sbjct: 92 TGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAV-----------T 140
Query: 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKW 254
+ TS + I + VDA ++G + + E G DF ++ K
Sbjct: 141 VTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKA 200
Query: 255 FFCPPSVAFLYCRKSILSSD-------MHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIP 307
P ++ C + H S +E+ G Y A +
Sbjct: 201 IGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQ 260
Query: 308 SAVTF--VSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRL 365
+ + + + + + + G L S + M GL +
Sbjct: 261 LINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVY 320
Query: 366 RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425
D L+ GV + I RI H
Sbjct: 321 VADPPDVIAFLK-----SHGVVIAGGIHKDI-----------GPKYI----RIGHMGVTA 360
Query: 426 LEDYEKFRDAVILLVEEG 443
+ L++
Sbjct: 361 CNKNLPYMKNCFDLIKLA 378
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Score = 42.2 bits (97), Expect = 9e-05
Identities = 61/401 (15%), Positives = 109/401 (27%), Gaps = 44/401 (10%)
Query: 44 NNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNS--LRKGILESRAAVKDLINADDVGEI 101
N G G P L + + +++ I + R A+ + N D I
Sbjct: 12 NFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDP-NTI 70
Query: 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEV 161
++ DN TT + G + H A+ ++I A
Sbjct: 71 TITDNVTT----GCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVA 126
Query: 162 QLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGV 221
+ + N +++ L+ + T + + + + +
Sbjct: 127 ATLNQGDAAAVLANHL-------GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYP 179
Query: 222 DQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVS 281
+V VD A + GS+ +D + D+Y HKWF P V LY L V
Sbjct: 180 VRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGW 239
Query: 282 HEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341
G E T G+ +Q + Q R A
Sbjct: 240 RSITYGAKGEPTGWAEGGK-----RFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAIC 294
Query: 342 WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401
+ LP + + + L V F V+ P+ ++A
Sbjct: 295 Q-------RSEFLWRGLNQLPH-VHCLATSAP---QAGL-VSFTVDSPLGHRA------- 335
Query: 402 QAGARDKDGIIT------GYARISHQVYNTLEDYEKFRDAV 436
++ I R E+ +
Sbjct: 336 IVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARL 376
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 42/368 (11%), Positives = 103/368 (27%), Gaps = 49/368 (13%)
Query: 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAV 143
E + ++ + + + + + A L + D+ L+
Sbjct: 56 EIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV--------LEPGDSFLVGANGIWGQ 107
Query: 144 KKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMP 203
+ + +++ + + +E+G K + L + +S
Sbjct: 108 RAVDIGE---------RIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTG 158
Query: 204 CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAF 263
+ P+ ++C + VD+ ++G + + G D S K PP +
Sbjct: 159 VL-QPLDGFGELCH-RYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSL 216
Query: 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF------- 316
+ F + + + G D V +
Sbjct: 217 ISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALI 276
Query: 317 -EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALR 375
E G++ +++ E A + L P + V + V D
Sbjct: 277 AEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTT-----VAVPAGYDWRD 331
Query: 376 LRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ-VYNTLEDYEKFRD 434
+ ++ F +E+ G ++ RI T E+ ++ +
Sbjct: 332 IVSYVIDHFDIEIMG--------GL----GPSTGKVL----RIGLLGCNATRENVDRVTE 375
Query: 435 AVILLVEE 442
A+ ++
Sbjct: 376 ALRAALQH 383
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (94), Expect = 3e-04
Identities = 29/251 (11%), Positives = 58/251 (23%), Gaps = 32/251 (12%)
Query: 202 MPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE-------IGADFYVSNLHKW 254
P + + + + +DAA + ++ HK+
Sbjct: 217 FPQPLHDALDKFQADTGIDI-DMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKF 275
Query: 255 FFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314
P ++ R V + G I + I + Q++
Sbjct: 276 GLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ---IGTFAINFSRPAGQVIAQYYEFLRL 332
Query: 315 RFEGGIDGIMQRNHEQALKMARMLANAWGTSLGS-PPEICAAMVMVGL--PSRLRVMGED 371
EG A + + + P+ V L D
Sbjct: 333 GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYD 392
Query: 372 DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEK 431
+ RLR G +VP + RI + ++ E
Sbjct: 393 LSERLR-----LRGWQVPAFTLGG-------------EATDIVVMRIMCRRGFEMDFAEL 434
Query: 432 FRDAVILLVEE 442
+ ++
Sbjct: 435 LLEDYKASLKY 445
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 40.6 bits (94), Expect = 3e-04
Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 13/191 (6%)
Query: 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233
+ ++ +E+ K G + + T+ C + ++ IC +E + + VDAA+A
Sbjct: 219 ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDI-WLHVDAAYAGS 277
Query: 234 SIKIDVKEI------GADFYVSNLHKWFFCPPSVAFLYCR-----KSILSSDMHHPVVSH 282
+ AD + N HKW + ++ + D + SH
Sbjct: 278 AFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSH 337
Query: 283 EFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342
+ + W + F G+ ++++ + + + +
Sbjct: 338 QGSGLITDYRHW-QLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDP 396
Query: 343 GTSLGSPPEIC 353
+ + +
Sbjct: 397 RFEVCAEVTLG 407
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 452 | |||
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.97 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.97 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.97 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.97 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.96 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.96 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.96 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.96 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.96 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.96 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.96 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.96 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.96 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.95 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.95 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.95 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.95 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.95 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.95 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.95 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.95 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.94 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.94 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.94 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.94 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.93 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.93 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.93 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.93 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.92 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.9 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.9 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.89 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.89 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.88 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.88 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.88 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.87 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.87 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.87 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.86 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.86 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.86 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.86 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.86 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.85 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.85 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.85 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.85 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.85 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.84 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.83 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.83 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.83 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.82 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.82 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.81 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.81 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.8 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.79 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.79 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.79 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.78 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.77 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.76 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.75 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.73 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.73 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.73 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.72 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.7 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.69 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-48 Score=381.38 Aligned_cols=382 Identities=17% Similarity=0.259 Sum_probs=315.3
Q ss_pred CCCHHHHHhhhccCCC-----CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhC
Q 012991 23 CISEAEIRDEFSHHQH-----GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLIN 94 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~-----~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~ 94 (452)
+.|++++|++||.+.+ +++|||+++.++.|++|.+++.+++.....++++ ..+....+.++++|+.+++++|
T Consensus 1 m~d~~~vR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~ 80 (405)
T d1jf9a_ 1 IFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 80 (405)
T ss_dssp CCCHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhChhcccCcCCCCeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcC
Confidence 4689999999998654 4699999999999999999999998877777643 2334556788999999999999
Q ss_pred CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-
Q 012991 95 ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI- 173 (452)
Q Consensus 95 ~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~- 173 (452)
+.++++++||+|+|++++.++.++... ...+|++|++.+.+|+++..+|..++++.|++++.++ .+.++.+
T Consensus 81 ~~~~~~i~~~~~~T~~~~~~~~~~~~~----~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~----~~~~g~~~ 152 (405)
T d1jf9a_ 81 ARSAEELVFVRGTTEGINLVANSWGNS----NVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIP----LNPDGTLQ 152 (405)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHHHHH----HCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEEC----BCTTSCBC
T ss_pred CCCcccccccCcHHHHHHHHHhccccc----ccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEEC----CCCCCcCC
Confidence 765689999999999999988874321 3588999999999999999999999999999999994 4555555
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcc
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHK 253 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K 253 (452)
++.+++++ +++|++|++++.+|.+|.+.|+++|.++||++|+ ++++|++|+.|..++|+..+++|++++|+||
T Consensus 153 ~~~~~~~i------~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~-~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK 225 (405)
T d1jf9a_ 153 LETLPTLF------DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSGHK 225 (405)
T ss_dssp GGGHHHHC------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred HHHHHHhc------cCCcEEEEEecCCCcccccCchHHhhhHHHHcCC-eeecccceeccccccchhhcCCceeeccccc
Confidence 78888888 7899999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred cCcCCCCcEEEEEecCccccCCCCCceeccCC-------C----CcccccccccccCccccccHHHHHHHHHHhhcCHHH
Q 012991 254 WFFCPPSVAFLYCRKSILSSDMHHPVVSHEFG-------N----GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDG 322 (452)
Q Consensus 254 ~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~ 322 (452)
| +||.|+|+++++++.+.. ..+....... . ......++.||+++..++++.++++++.++ |.+.
T Consensus 226 ~-~Gp~G~g~l~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~--g~~~ 300 (405)
T d1jf9a_ 226 L-YGPTGIGILYVKEALLQE--MPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSAL--GLNN 300 (405)
T ss_dssp T-TSCSSCEEEEECHHHHTT--CCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH--CHHH
T ss_pred c-ccCCCceeeeechhhhcc--cCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHh--ChHH
Confidence 8 799999999999988775 2332211100 0 011234567999999999999999999987 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
+.++...+.+++.+.+...+...+..+.. +.+++.|.++ +.++.++...|.+ +||.++.++.|.
T Consensus 301 i~~~~~~L~~~~~~~l~~~~~~~~~~~~~-r~~ivsf~~~-------~~~~~~~~~~L~~-~gI~v~~G~~c~------- 364 (405)
T d1jf9a_ 301 IAEYEQNLMHYALSQLESVPDLTLYGPQN-RLGVIAFNLG-------KHHAYDVGSFLDN-YGIAVRTGHHCA------- 364 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEEEESCTT-CCSEEEEEET-------TCCHHHHHHHHHH-TTEECEEECTTC-------
T ss_pred HHHHHHHHHHHHHhhhhcCCcccccCCcC-cCcEEEEEcC-------CCCHHHHHHHHHH-CCcEEEccchhh-------
Confidence 99999999999999998876555555543 4788889886 4567788888865 699998766542
Q ss_pred CCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 403 AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
..+... ...++++|+|++.|||.+||++++++|+++.+
T Consensus 365 ~~~~~~-~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r 402 (405)
T d1jf9a_ 365 MPLMAY-YNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR 402 (405)
T ss_dssp HHHHHH-TTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHh-cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 111111 13467999999999999999999999999875
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=7e-46 Score=365.40 Aligned_cols=381 Identities=20% Similarity=0.246 Sum_probs=312.1
Q ss_pred HHHHHhhhccCCC-----CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCC
Q 012991 26 EAEIRDEFSHHQH-----GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLINADD 97 (452)
Q Consensus 26 ~~~ir~~~~~~~~-----~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~ 97 (452)
++.||++||.+.+ +++|||+++.++.|+.|++++.+++....+++++ ..+....+.++++|+.+++++|++.
T Consensus 4 ~a~iR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~ 83 (408)
T d1t3ia_ 4 AATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARS 83 (408)
T ss_dssp HHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhCcccccccCCCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4679999998644 4799999999999999999999998877676643 2345556789999999999999975
Q ss_pred CCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHH
Q 012991 98 VGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INE 176 (452)
Q Consensus 98 ~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~ 176 (452)
++.+++++++|+++++++.++.. ..+++|++|++++.+|+++..+|..++++.|.+++.++. +..+.. .+.
T Consensus 84 ~~~i~~~~~tt~~~n~~~~~~~~----~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~----~~~~~~~~~~ 155 (408)
T d1t3ia_ 84 PREIVYTRNATEAINLVAYSWGM----NNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL----DEQESFDLEH 155 (408)
T ss_dssp GGGEEEESSHHHHHHHHHHHTHH----HHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB----CTTSSBCHHH
T ss_pred cccEEeecchHHHHHHHHhhccc----cccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeec----cccccccHHH
Confidence 68899999999999998876422 135789999999999999999999888999999999954 333333 788
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCc
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFF 256 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~ 256 (452)
+++.+ +++|++|++++.+|.+|.+.|+++|.++|+++|+ ++++|++|++|..++|+..+++|++++|+||| +
T Consensus 156 l~~~~------~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~-~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~-~ 227 (408)
T d1t3ia_ 156 FKTLL------SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGA-KVLVDACQSAPHYPLDVQLIDCDWLVASGHKM-C 227 (408)
T ss_dssp HHHHC------CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCSEEEEEGGGT-T
T ss_pred hhhcc------CCCceEEEEecccccccccCcHHHHhhhhhccCc-eeeeccceecccccccccccCCceEEeccccc-c
Confidence 88888 7899999999999999999999999999999999 79999999999999999999999999999998 7
Q ss_pred CCCCcEEEEEecCccccCCCCCceeccCC------C----CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHH
Q 012991 257 CPPSVAFLYCRKSILSSDMHHPVVSHEFG------N----GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQR 326 (452)
Q Consensus 257 g~~G~G~l~~~~~~~~~~l~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~ 326 (452)
||+|+|+++++++.... .+|....+.. . ......++.||+++..++++..+++++.++ |.+++.++
T Consensus 228 gp~G~g~l~v~~~~~~~--~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~--g~~~i~~~ 303 (408)
T d1t3ia_ 228 APTGIGFLYGKEEILEA--MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDL--GMENIHNY 303 (408)
T ss_dssp SCTTCEEEEECHHHHHH--SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH--CHHHHHHH
T ss_pred CCCCccccccchhhhhc--CCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHc--CHHHHHHH
Confidence 99999999999988764 3443211000 0 011234668999999999999999999987 99999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCc---ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLGSPP---EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
...+.+++.+.+.+.+++.+..+. ..+.+++.|.++ +.++.++...|.+ .||.++.++.| ..
T Consensus 304 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~-------~~~~~~v~~~L~~-~gI~v~~G~~c-------~~ 368 (408)
T d1t3ia_ 304 EVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA-------GLHASDVATMVDQ-DGIAIRSGHHC-------TQ 368 (408)
T ss_dssp HHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET-------TBCHHHHHHHHHT-TTEECBCSCTT-------CH
T ss_pred HHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeC-------CCCHHHHHHHHhh-CCcEEecCccc-------cc
Confidence 999999999999988777766543 234778889886 5678889999865 59999765544 21
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++... ...++++|+|++.|||.+|||+++++|+++++.
T Consensus 369 ~~~~~-~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 369 PLHRL-FDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp HHHHH-TTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-hcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 11111 134578999999999999999999999999864
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=4.3e-44 Score=349.91 Aligned_cols=363 Identities=20% Similarity=0.247 Sum_probs=293.3
Q ss_pred hhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhH
Q 012991 32 EFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATT 109 (452)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~ 109 (452)
+||.+ ...+|||+++.++.|+.|++++.+.+.....++... ......+.++++|+.+|+++|++ +++|+||+|+|+
T Consensus 1 ~fp~l-~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~i~~~~g~t~ 78 (381)
T d1elua_ 1 QFPGL-ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTT 78 (381)
T ss_dssp CCGGG-TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHH
T ss_pred CCCCC-CCCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCC-cccEEEECChHH
Confidence 58877 456899999999999999999999887654444332 23455677899999999999996 789999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK 189 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 189 (452)
++++++.++ ..++|++|++++.+|+++..+|..++++.|++++.++.+... ......+.+++.+ ++
T Consensus 79 a~~~~~~~l-------~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~~l~~~i------~~ 144 (381)
T d1elua_ 79 GCDIVLWGL-------DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL-NQGDAAAVLANHL------GP 144 (381)
T ss_dssp HHHHHHHHS-------CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS-SSSCHHHHHHTTC------CT
T ss_pred Hhhhcchhh-------hhcCCceEEEeccccceeeecccccccccccccccccccccc-ccchHHHHHHhhh------cc
Confidence 999999987 358999999999999999999998889999999999643111 1111256666666 68
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHc----CCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDE----GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~----~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
+|++|++++++|+||.+.|+++|.++||++ ++ ++++|++|+.|..++++..+++|++++|+|||+++|.|+|+++
T Consensus 145 ~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~-~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~ 223 (381)
T d1elua_ 145 KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPV-RVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLY 223 (381)
T ss_dssp TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCC-EEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEE
T ss_pred cccccccccccccccccchhhHHHHHHhhccccccc-ccccccccccccccccccccccccccccccccccccchhhHHH
Confidence 999999999999999999999999999985 68 7999999999999999999999999999999999999999999
Q ss_pred EecCccccCCCCCceecc---CCC-------CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 266 CRKSILSSDMHHPVVSHE---FGN-------GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
++++.... +.+....+. .+. ......+..++++...++++.++++.+... +..+...++..++++++.
T Consensus 224 ~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~~~l~ 301 (381)
T d1elua_ 224 IHGDCLGE-INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQ-GTAEERYQAICQRSEFLW 301 (381)
T ss_dssp ECTTTGGG-CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHh-cCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHh-cccccchhhhhhHHHHHH
Confidence 99998876 332221110 000 011223466889998999999999988875 334555678889999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.++++++++.+...++++++|.++ ...+.+.+.+.|.+ .||.++.. ..+++
T Consensus 302 ~~L~~~~~~~~~~~~~~~~~~vsf~~~------~~~~~~~i~~~L~~-~gi~v~~~-------------------~~~~~ 355 (381)
T d1elua_ 302 RGLNQLPHVHCLATSAPQAGLVSFTVD------SPLGHRAIVQKLEE-QRIYLRTI-------------------ADPDC 355 (381)
T ss_dssp HHHHHSTTEEESCSSCCSSSEEEEEEC------SSSCHHHHHHHHHH-TTEECEEE-------------------TTTTE
T ss_pred HHHhcCCCeEecCCCCccccEEEEEcC------CCCCHHHHHHHHHh-CCcEEEec-------------------CCCCE
Confidence 999999998887766556889999886 23456778888876 49988532 23579
Q ss_pred EEecccccCCHHHHHHHHHHHHHH
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+|+|++.+||.+||++++++|+++
T Consensus 356 lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 356 IRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp EEEECCTTCCHHHHHHHHHHHTTC
T ss_pred EEEecCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-39 Score=315.95 Aligned_cols=365 Identities=15% Similarity=0.156 Sum_probs=273.5
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHH--hcCCchh---hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKF--LQQPDDF---YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
-||||+++.++.|+.|+|+|.+++... .++|++. .+....+.++++|+.+|+++|++ +++|+||+|+|++++.+
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~-~~~I~~~~~~t~~l~~~ 81 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGATESDNLA 81 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCC-CCcEEEECCHHHHHHHH
Confidence 369999999999999999999886533 2344331 33455678899999999999997 89999999999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+.++... .+++|++|++++++|+++...++. ++..|++++.++ .++++.+ ++++++++ +++|++
T Consensus 82 ~~~~~~~----~~~~gd~Vv~~~~~~~s~~~~~~~-~~~~G~~v~~v~----~~~~~~~d~~~~~~~i------~~~T~l 146 (391)
T d1p3wa_ 82 IKGAANF----YQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLA----PQRNGIIDLKELEAAM------RDDTIL 146 (391)
T ss_dssp HHHHHHH----HGGGCCEEEEETTSCHHHHHHHHH-HHHTTCEEEEEC----CCTTSCCCHHHHHHHC------CTTEEE
T ss_pred Hhhhhhh----hcCCCCEEEEeccccchHHHHHHH-HHHcCCEEEEeC----CCCCCeEcHHHHHHhC------CCCcEE
Confidence 8876321 247899999999999999888876 567799999994 4444555 89999999 789999
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCcccc
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSS 273 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~ 273 (452)
|++++++|+||.+.|+++|.++||++|+ ++++|++|+.|..++|+...++|++++|+||| +||.|+|+++++++....
T Consensus 147 v~is~~~n~tG~~~~~~~I~~~~~~~~~-~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~-~g~~g~g~~~~~~~~~~~ 224 (391)
T d1p3wa_ 147 VSIMHVNNEIGVVQDIAAIGEMCRARGI-IYHVDATQSVGKLPIDLSQLKVDLMSFSGHKI-YGPKGIGALYVRRKPRVR 224 (391)
T ss_dssp EECCSBCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTTBTTBCCCTTTSCCSEEEEESTTT-TSCSSCEEEEECBTTBCC
T ss_pred EEEECCCCCCeeECCHHHHHHHhccCCc-EEEEeeccccCCccccchhccccccccccccc-cCCCceEEEEEecchhcc
Confidence 9999999999999999999999999999 89999999999999999999999999999998 799999999999988775
Q ss_pred CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-cc
Q 012991 274 DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-EI 352 (452)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~ 352 (452)
..+.. .|+. .......++.......++..++....+. .....+++.++..++.+.|.++++..+.... ..
T Consensus 225 --~~~~~---~gg~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 295 (391)
T d1p3wa_ 225 --IEAQM---HGGG-HERGMRSGTLPVHQIVGMGEAYRIAKEE---MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHG 295 (391)
T ss_dssp --CCCSS---CSSC-TTTTTSCSCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTS
T ss_pred --cCCcc---cCCc-cccCcccCcchhhhhhhhhhhhhHHHHH---hhHHHHHHHHHHHHHHHHHHhhcCeeeccccccc
Confidence 33331 2222 1233445666666666666666655542 4445667778888888888777555443332 23
Q ss_pred ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC----CCccceEEecccccCCHHH
Q 012991 353 CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD----GIITGYARISHQVYNTLED 428 (452)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~iRis~~~~~t~~d 428 (452)
...++.|..+ +.+...+...| .+|.++.+..+.... ........+. ....++||+|++.|||.+|
T Consensus 296 ~~~~~~~~~~-------~~~~~~~~~~l---~~i~v~~G~~c~~~~-~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~ed 364 (391)
T d1p3wa_ 296 APNILNVSFN-------YVEGESLIMAL---KDLAVSSGSACTSAS-LEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 364 (391)
T ss_dssp CTTEEEEEET-------TSCHHHHHHHT---TTEECBCCCC-------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHH
T ss_pred CceEEEEEeC-------CCChHHHHHHh---CCCEEEccccccCCc-cchhHHHHHcCCCccccCCEEEEecCCCCCHHH
Confidence 3556666664 45667777776 267776554432110 0000000000 1234689999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 012991 429 YEKFRDAVILLVEE 442 (452)
Q Consensus 429 i~~l~~~l~~~~~~ 442 (452)
|++++++|+++++.
T Consensus 365 id~l~~~l~~~l~~ 378 (391)
T d1p3wa_ 365 IDYTIELVRKSIGR 378 (391)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-38 Score=308.39 Aligned_cols=365 Identities=18% Similarity=0.223 Sum_probs=272.7
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
.||||+++.++.|+.|.|++.+++....++|++. ++....+.++++|+++++++|++ +++|+|++|+|+++..++.+
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~-~~~i~~~~~~T~~l~~~~~~ 80 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATESINWILKT 80 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHHHHHHHHH
T ss_pred EEEEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC-CCcEEEECCHHHHHHhhhhc
Confidence 4799999999999999999999988777777642 34566778899999999999996 89999999999999999876
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+... ...+|+.|+++...|+++...+.. +++.|++++.+| .+.++.+ ++++++++ +++|++|++
T Consensus 81 ~~~~----~~~~g~~v~~~~~~~~~~~~~~~~-~~~~g~~v~~vp----~~~~~~id~~~l~~~i------~~~t~lv~i 145 (376)
T d1eg5a_ 81 VAET----FEKRKRTIITTPIEHKAVLETMKY-LSMKGFKVKYVP----VDSRGVVKLEELEKLV------DEDTFLVSI 145 (376)
T ss_dssp HHHH----TTTTCCEEEECTTSCHHHHHHHHH-HHHTTCEEEECC----BCTTSCBCHHHHHHHC------CTTEEEEEE
T ss_pred cccc----ccccCcccccccccchhhHHHHHH-HHhcCCEEEEEc----CCCCCeECHHHHHHhc------CCCceEEEE
Confidence 5432 357788899888888888777766 577799999994 4555556 89999999 789999999
Q ss_pred eccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSD 274 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~ 274 (452)
++++|+||.+.|++++.++++.+ ++ ++++|++|+.|..++|+..+++|++++|+||| +||+|.|+++++++...
T Consensus 146 s~v~~~tG~~~~~~~i~~~~~~~~~~~-~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~-~gp~G~~~l~~~~~~~~-- 221 (376)
T d1eg5a_ 146 MAANNEVGTIQPVEDVTRIVKKKNKET-LVHVDAVQTIGKIPFSLEKLEVDYASFSAHKF-HGPKGVGITYIRKGVPI-- 221 (376)
T ss_dssp ESBCTTTCBBCCHHHHHHHHHHHCTTC-EEEEECTTTTTTSCCCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTSCC--
T ss_pred ECCccccceeeeehhhhhhhhhcccCc-eeEEEeeeccccccccccccCccceeccccee-ecCCCceeEEeccCccc--
Confidence 99999999999999999998666 89 89999999999999999999999999999998 79999999999877543
Q ss_pred CCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc
Q 012991 275 MHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354 (452)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 354 (452)
.|.. .+++. ....+.++.+.........+...... ..............++.+.|.......+........
T Consensus 222 --~p~~---~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 292 (376)
T d1eg5a_ 222 --RPLI---HGGGQ-ERGLRSGTQNVPGIVGAARAMEIAVE---ELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLP 292 (376)
T ss_dssp --CCSB---CSSCT-TTTTBCSCCCHHHHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCT
T ss_pred --CCcc---cCCCC-cccccCCcccchhhhhHHHHhhcccc---chhhhhhhhhhhhhhhcccccccccccccccccccc
Confidence 2321 22111 22333455665555555544444433 566667777778888888887653333333333446
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC---CCccceEEecccccCCHHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD---GIITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~iRis~~~~~t~~di~~ 431 (452)
.++.+.++ +.++..+...|.+ +||.++.++.+...+......+.... ...+++||+|++.|||.+|||+
T Consensus 293 ~~~~~~~~-------~~~~~~~~~~L~~-~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~ 364 (376)
T d1eg5a_ 293 NTLSVSFP-------NIRGSTLQNLLSG-YGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDY 364 (376)
T ss_dssp TEEEEECT-------TCCHHHHHHHHHH-TTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHH
T ss_pred ceeeeccC-------CCCHHHHHHHHhh-CCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHH
Confidence 67777776 5567888888865 69999877655321100000000000 1134689999999999999999
Q ss_pred HHHHHHHHHh
Q 012991 432 FRDAVILLVE 441 (452)
Q Consensus 432 l~~~l~~~~~ 441 (452)
++++|++++.
T Consensus 365 l~~~L~~iv~ 374 (376)
T d1eg5a_ 365 FLKKIEEILS 374 (376)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999985
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=2.3e-38 Score=311.45 Aligned_cols=363 Identities=16% Similarity=0.163 Sum_probs=273.1
Q ss_pred HHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEE
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISL 103 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~ 103 (452)
+..+|++||. .++++|||+++.++.|+.|.+++.+++....+++... ....+.+.++++|+++++++|++ +++++|
T Consensus 15 l~~~R~~F~~-~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~-~~ei~~ 92 (404)
T d1qz9a_ 15 LAPLRQQFAL-PEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVV 92 (404)
T ss_dssp TGGGGGGBCC-CTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEE
T ss_pred HHHHHhcCCC-CCCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCC-CCcEEE
Confidence 4678999995 4789999999999999999999999987655555432 23455678899999999999997 899999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH-HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY-VTRAGGSVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~-a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
|+++|++++.++....+.. ....+++.|++.+.+|++....+... ++.....+..- +.. .+.+++++
T Consensus 93 ~~~~T~~~~~~~~~~~~~~--~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i 161 (404)
T d1qz9a_ 93 TDTTSINLFKVLSAALRVQ--ATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR---------LVDSPEELPQAI 161 (404)
T ss_dssp CSCHHHHHHHHHHHHHHHH--HHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE---------EESSGGGHHHHC
T ss_pred ecCchHHHHHHhhhhhhhh--cccCCCcEEEEeccccchHHHHHHhhhheeeeeceecc---------ccccchhHHHhc
Confidence 9999999988765432110 01357788888877777765555433 22222222111 111 46777788
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC-
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G- 260 (452)
+++|++|++++.+|.||.+.|+++|+++|+++|+ ++++|++|+.|..++++..+++|++++|+|||+++|+|
T Consensus 162 ------~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~-~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~ 234 (404)
T d1qz9a_ 162 ------DQDTAVVMLTHVNYKTGYMHDMQALTALSHECGA-LAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS 234 (404)
T ss_dssp ------STTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC
T ss_pred ------CCCceEEEEecccccccceecHHHHhcccccccc-ceeEEeeccccccccccccccceEEEEechhhcccCCce
Confidence 7899999999999999999999999999999999 89999999999999999999999999999999877666
Q ss_pred cEEEEEecCccccCCCCCceeccCCC------------CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGN------------GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
+|+++.++..... .++....+.+. .......+.++++......+..++.++... +.+.+.++..
T Consensus 235 ~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~ 310 (404)
T d1qz9a_ 235 QAFVWVSPQLCDL--VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQT--DMASLRRKSL 310 (404)
T ss_dssp CCEEEECTTTTTT--SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTS--CHHHHHHHHH
T ss_pred EEEEEechhhhhh--CCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 6888888887765 22221111111 011233456777777777788888888865 8888888877
Q ss_pred HHHHHHHHHH---HHHcCCCcCCCc--ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 329 EQALKMARML---ANAWGTSLGSPP--EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 329 ~~~~~l~~~L---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
.+...+...+ ...+++++++|. ..+++++.|..+ ++.++.+.|.++ ||.+..
T Consensus 311 ~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~---------~~~~v~~~L~~~-gi~~~~------------- 367 (404)
T d1qz9a_ 311 ALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP---------EGYAVIQALIDR-GVIGDY------------- 367 (404)
T ss_dssp HHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT---------THHHHHHHHHTT-TEECEE-------------
T ss_pred HhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecC---------CHHHHHHHHHHC-CCEEee-------------
Confidence 7777655544 345677887664 356788999876 467899999764 997521
Q ss_pred CCCCCCCCccceEEeccc-ccCCHHHHHHHHHHHHHHHhc
Q 012991 404 GARDKDGIITGYARISHQ-VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++.||+|++ .|||.+||++++++|++++++
T Consensus 368 -------r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 368 -------REPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp -------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------cCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 23478999996 589999999999999999975
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-36 Score=294.98 Aligned_cols=349 Identities=13% Similarity=0.151 Sum_probs=269.7
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhc
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
+.|+ +++.+.|++|+++|.. ...++.+..+.++++++++.+++++|+++...|+|++|||++++.++.++
T Consensus 21 ~l~~-pGP~~~~~~Vl~am~~-------~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l-- 90 (388)
T d1h0ca_ 21 LLLG-PGPSNLPPRIMAAGGL-------QMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV-- 90 (388)
T ss_dssp EECS-SSCCCCCHHHHHHHTC-------CCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH--
T ss_pred cccc-CCCCCCCHHHHHHhCc-------CCCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHh--
Confidence 3455 4466778889988753 23344567889999999999999999985557999999999999999987
Q ss_pred ccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEecc
Q 012991 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHI 199 (452)
Q Consensus 121 ~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~ 199 (452)
+.++++|++....|.+..... .+...+..+..+..++ ...+ .+.+++.+. ..++++|++++.
T Consensus 91 ------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~v~~~~~ 153 (388)
T d1h0ca_ 91 ------LEPGDSFLVGANGIWGQRAVD--IGERIGARVHPMTKDP----GGHYTLQEVEEGLA-----QHKPVLLFLTHG 153 (388)
T ss_dssp ------CCSSCCEEECBSSHHHHHHHH--HHHHHC--CBCCBCCT----TCCCCHHHHHHHHH-----HHCCSEEEEESE
T ss_pred ------hccCCceeeecccceeeeecc--ccccccccccccccCC----ccccchHHHHHHhc-----cCCcceEEEeee
Confidence 588999999998888764333 3566676666664422 1122 455555554 467899999999
Q ss_pred CCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCc
Q 012991 200 TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPV 279 (452)
Q Consensus 200 ~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~ 279 (452)
+|.+|.+.|+++|.++|+++|+ ++++|++|++|..++|+..+++|++++|.|||++||.|+|+++.+++.++. + .+.
T Consensus 154 ~n~tG~i~pi~~i~~~~~~~g~-~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~-~-~~~ 230 (388)
T d1h0ca_ 154 ESSTGVLQPLDGFGELCHRYKC-LLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKK-M-YSR 230 (388)
T ss_dssp ETTTTEECCCTTHHHHHHTTTC-EEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHH-H-TTC
T ss_pred eeccccccCHHHHHHHhhcccc-cceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHh-h-hhc
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999876654 1 111
Q ss_pred eecc---C---------CCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc-
Q 012991 280 VSHE---F---------GNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL- 346 (452)
Q Consensus 280 ~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~- 346 (452)
.... + .........+.++++...+.++.++++++.+. |.+.+.++..++..++++.+... ++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~--g~~~~~~~~~~l~~~l~~~~~~~-g~~~~ 307 (388)
T d1h0ca_ 231 KTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQ--GLENSWRQHREAAAYLHGRLQAL-GLQLF 307 (388)
T ss_dssp SSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHH-TCCBS
T ss_pred cccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHh--ccccccccccchhHHHHHHHhhc-Ccccc
Confidence 0000 0 00111223456788888888999999998876 99999999999999999999887 5443
Q ss_pred CCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec-ccccC
Q 012991 347 GSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS-HQVYN 424 (452)
Q Consensus 347 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis-~~~~~ 424 (452)
...+. ....++.|.+| ++.++.++...|.+++||.+..+..+ ..++.+||| ++.++
T Consensus 308 ~~~~~~rs~~i~~~~~p------~~~~~~~~~~~L~~~~gI~v~~G~~~----------------~~~~~iRis~~g~~~ 365 (388)
T d1h0ca_ 308 VKDPALRLPTVTTVAVP------AGYDWRDIVSYVIDHFDIEIMGGLGP----------------STGKVLRIGLLGCNA 365 (388)
T ss_dssp SCSGGGBCTTEEEEECC------TTCCHHHHHHHHHHHHCEECEECCGG----------------GTTTEEEEECCGGGC
T ss_pred cCCHHHcCCeEEEEECC------CCCCHHHHHHHHHhcCCEEEeCCchh----------------hcCCEEEEeCCCCCC
Confidence 33332 34567889887 46788899999887789999876553 335789999 67889
Q ss_pred CHHHHHHHHHHHHHHHhccc
Q 012991 425 TLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~~~ 444 (452)
|.+||++++++|++++++-.
T Consensus 366 t~edid~li~aL~~~L~~l~ 385 (388)
T d1h0ca_ 366 TRENVDRVTEALRAALQHCP 385 (388)
T ss_dssp SHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998744
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-33 Score=271.89 Aligned_cols=342 Identities=15% Similarity=0.100 Sum_probs=246.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCc--EEEecChhHHHHHHHHHhhcccc
Q 012991 46 GSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGE--ISLVDNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--i~~t~g~t~a~~~~~~~l~~~~~ 123 (452)
+++.+.|+.|++++.+. ..++++..+.+.++++++.+++++|++ ++. +++|+|+|+++++++.++
T Consensus 6 pGP~~~~~~V~~A~~~~-------~~~~~~~~~~~~~~~~r~~l~~l~~~~-~~~~~i~~t~s~T~~~~~~~~~l----- 72 (361)
T d1m32a_ 6 PGPLTTSRTVKEAMLFD-------SCTWDDDYNIGVVEQIRQQLTALATAS-EGYTSVLLQGSGSYAVEAVLGSA----- 72 (361)
T ss_dssp SSSCCCCHHHHHTTCCC-------CCTTSHHHHTTTHHHHHHHHHHHHCSS-SSEEEEEEESCHHHHHHHHHHHS-----
T ss_pred CCCCCCCHHHHHHhhhh-------ccCCCcHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHh-----
Confidence 34667778888887532 223445556778999999999999997 343 678889999999999987
Q ss_pred cCCCCCCCEEE-EeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCC
Q 012991 124 EGRFHRNDTVL-MLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSM 202 (452)
Q Consensus 124 ~~~~~~g~~Vl-~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~ 202 (452)
..+++.++ +....|......+ +...+.....+...... ......+...... .+++++|.+++.+|.
T Consensus 73 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~v~~~~~~~~ 139 (361)
T d1m32a_ 73 ---LGPQDKVLIVSNGAYGARMVEM---AGLMGIAHHAYDCGEVA-RPDVQAIDAILNA------DPTISHIAMVHSETT 139 (361)
T ss_dssp ---CCTTCCEEEEESSHHHHHHHHH---HHHHTCCEEEEECCTTS-CCCHHHHHHHHHH------CTTCCEEEEESEETT
T ss_pred ---hhhccccceeeehhhhhhHHHH---hhhhhcccccccccccC-CccchhhHHHHHh------ccCccceEEEeeecc
Confidence 34555544 4455554433333 34445555554432111 1111234444444 689999999999999
Q ss_pred CcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceec
Q 012991 203 PCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSH 282 (452)
Q Consensus 203 tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~ 282 (452)
||.+.|+++|.++|+++|+ ++++|++|++|..++|+..+++|++++|+|||++||+|+|+++++++.... ..+....
T Consensus 140 tG~~~~i~~i~~~~~~~g~-~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~--~~~~~~~ 216 (361)
T d1m32a_ 140 TGMLNPIDEVGALAHRYGK-TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAA--CKGHSRS 216 (361)
T ss_dssp TTEECCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTT--CTTCCSC
T ss_pred cccchhhhhhhhhhcccce-eeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhh--hcccccc
Confidence 9999999999999999999 899999999999999999999999999999999999999999999988876 2333211
Q ss_pred cCCCCc-------ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccc-c
Q 012991 283 EFGNGL-------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEIC-A 354 (452)
Q Consensus 283 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~ 354 (452)
+..... .....+.++++....+++..++.+... +++.+...++.+.+.+.+.+.+... ++.+..++..+ .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~ 294 (361)
T d1m32a_ 217 LSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK-EGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSP 294 (361)
T ss_dssp STTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCS
T ss_pred ccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCC
Confidence 111100 012234567888888888878876665 2356677777888888898888876 66665555433 4
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRD 434 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~ 434 (452)
.++.|.+|+. ...+..++.+.|.++ ||.+..+.. ..++++|||+..++|++||+++++
T Consensus 295 ~v~~~~~p~~----~~~~~~~~~~~l~~~-gi~i~~G~~-----------------~~~~~~Ris~~g~~~~~di~~lv~ 352 (361)
T d1m32a_ 295 IITAFYSPED----PQYRFSEFYRRLKEQ-GFVIYPGKV-----------------SQSDCFRIGNIGEVYAADITALLT 352 (361)
T ss_dssp SEEEEECCCC----TTCCHHHHHHHHHHT-TEECEECCC-----------------SSSCEEEEECCSSCCHHHHHHHHH
T ss_pred cEEEEECCCC----CCCCHHHHHHHHHHC-CcEEECCCc-----------------CCCCEEEEeCCCCCCHHHHHHHHH
Confidence 5667887731 234677899999775 999865433 345789999877899999999999
Q ss_pred HHHHHH
Q 012991 435 AVILLV 440 (452)
Q Consensus 435 ~l~~~~ 440 (452)
+|++++
T Consensus 353 al~~~L 358 (361)
T d1m32a_ 353 AIRTAM 358 (361)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 999875
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=4.3e-33 Score=270.91 Aligned_cols=349 Identities=15% Similarity=0.165 Sum_probs=261.7
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
-.+|-++++.+.|++|+++|... ..++++..+.+.++++++.+++++|+++...|+|++|||++++.++.++
T Consensus 18 ~~~l~~PGP~~v~~~Vl~am~~~-------~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~- 89 (377)
T d1vjoa_ 18 SRLLLGPGPSNAHPSVLQAMNVS-------PVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA- 89 (377)
T ss_dssp CCEECSSSCCCCCHHHHHHHSSC-------CCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-
T ss_pred cceeecCCCCCCCHHHHHHhCcC-------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhc-
Confidence 34566677888888899987532 2344667888999999999999999986668888889999999999987
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEecc
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI 199 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~ 199 (452)
+.+++++++....|.+.. +...+...+.....+..+.. . ....+..+.... ..++++|++++.
T Consensus 90 -------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~-----~~~~~~v~~~~~ 152 (377)
T d1vjoa_ 90 -------VEPGDVVLIGVAGYFGNR--LVDMAGRYGADVRTISKPWG--E-VFSLEELRTALE-----THRPAILALVHA 152 (377)
T ss_dssp -------CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT--C-CCCHHHHHHHHH-----HHCCSEEEEESE
T ss_pred -------cccccccceeeechhhhh--hhhhhhhhcccccccccCCC--C-cccchhhhhhhh-----cCcceeeeeeee
Confidence 588999999888887643 33335666777777654221 1 111233333332 467899999999
Q ss_pred CCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCc
Q 012991 200 TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPV 279 (452)
Q Consensus 200 ~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~ 279 (452)
+|.||.+.|+++|.++||++|+ ++++|++|++|..+++++.+++|++++|.|||++||+|+|+++.++..++. ..+.
T Consensus 153 ~~~tg~~~~i~~i~~~~~~~g~-~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~--~~~~ 229 (377)
T d1vjoa_ 153 ETSTGARQPLEGVGELCREFGT-LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEK--LQRR 229 (377)
T ss_dssp ETTTTEECCCTTHHHHHHHHTC-EEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHH--HHTC
T ss_pred eccceeeechhhhhhhhhhccc-eEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhh--hhcc
Confidence 9999999999999999999999 899999999999999999999999999999999999999999998877664 1111
Q ss_pred eeccCCCCc---------ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 012991 280 VSHEFGNGL---------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP 350 (452)
Q Consensus 280 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 350 (452)
......... ....+..+++.+....++..+....... |.+...++.+++..++++.+... ++.++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~ 306 (377)
T d1vjoa_ 230 RTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE--GLANCWQRHQKNVEYLWERLEDI-GLSLHVEK 306 (377)
T ss_dssp SSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCG
T ss_pred CCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhc--CchHHHHHHHHHhhhhhhhhhcc-CceeecCh
Confidence 000000000 0112233455555555566666666654 99999999999999999999886 66554444
Q ss_pred -ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc-cccCCHHH
Q 012991 351 -EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH-QVYNTLED 428 (452)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~~d 428 (452)
.....++.|.+| ++.++.++...|.+++||.+..++.+ ..++.+|||+ +.++|.+|
T Consensus 307 ~~rs~~v~~~~~p------~~~~~~~l~~~L~~~~gI~v~~G~~~----------------~~~~~~Ris~~g~~~t~ed 364 (377)
T d1vjoa_ 307 EYRLPTLTTVCIP------DGVDGKAVARRLLNEHNIEVGGGLGE----------------LAGKVWRVGLMGFNSRKES 364 (377)
T ss_dssp GGBCSSEEEEECC------TTCCHHHHHHHHHHHHCEECEECCGG----------------GTTTEEEEECCGGGCSHHH
T ss_pred HhcCCeEEEEECC------CCCCHHHHHHHHHhcCCEEEecCccc----------------ccCCEEEEecCcCCCCHHH
Confidence 344567788887 46788899998877789999776654 3457899995 67788999
Q ss_pred HHHHHHHHHHHHh
Q 012991 429 YEKFRDAVILLVE 441 (452)
Q Consensus 429 i~~l~~~l~~~~~ 441 (452)
|++++++|+++++
T Consensus 365 i~~lv~al~~~l~ 377 (377)
T d1vjoa_ 365 VDQLIPALEQVLR 377 (377)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999874
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-32 Score=267.41 Aligned_cols=344 Identities=13% Similarity=0.102 Sum_probs=254.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC---CCCcEEEecChhHHHHHHHHHhhccc
Q 012991 46 GSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD---DVGEISLVDNATTAAAIVLQQIGRGF 122 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~i~~t~g~t~a~~~~~~~l~~~~ 122 (452)
+++.+.|+.|+++|... ...+++..+.+.++++++.++++++.. +.+.++||+|||+++++++.++.+.
T Consensus 9 PGP~~v~~~V~~Am~~~-------~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~- 80 (382)
T d2bkwa1 9 PGPIILSGAVQKALDVP-------SLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS- 80 (382)
T ss_dssp SSSCCCCHHHHHTTSCC-------CCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT-
T ss_pred CCCCCCCHHHHHHhCcc-------cCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHh-
Confidence 45667788899887431 112344566778888889888988752 3567999999999999999998642
Q ss_pred ccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCC
Q 012991 123 TEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITS 201 (452)
Q Consensus 123 ~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n 201 (452)
.++||+|++....+++.... ..+...+..+..+... +..... .+.+++.+. ..+++++++++.+|
T Consensus 81 ----~~~gd~vlv~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~ 146 (382)
T d2bkwa1 81 ----KAPNKNVLVVSTGTFSDRFA--DCLRSYGAQVDVVRPL---KIGESVPLELITEKLS-----QNSYGAVTVTHVDT 146 (382)
T ss_dssp ----TCSCCEEEEECSSHHHHHHH--HHHHHTTCEEEEECCS---STTSCCCHHHHHHHHH-----HSCCSEEEEESEET
T ss_pred ----cCCCCceEEEEechhhhhhh--hhcccccccccccccc---CCCCccchhHHHHHhh-----hccchheeeeeccc
Confidence 37899999999888775433 3356778888777421 111112 566666665 46789999999999
Q ss_pred CCcccccHHHHHHHHHHcC--CCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCc
Q 012991 202 MPCVVIPVRKLVKICRDEG--VDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPV 279 (452)
Q Consensus 202 ~tG~~~~l~~i~~l~~~~~--~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~ 279 (452)
.||...|++++.++|++++ + ++++|++|++|..++|+..+++|++++|+|||++||+|+|+++++++.++. ..+.
T Consensus 147 ~tg~~~~~~~~~~~~~~~~~~~-~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~--~~~~ 223 (382)
T d2bkwa1 147 STAVLSDLKAISQAIKQTSPET-FFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDY--ALND 223 (382)
T ss_dssp TTTEECCHHHHHHHHHHHCTTS-EEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHH--HTCH
T ss_pred cccccccchhhhhhccccccce-eeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhh--hhhc
Confidence 9999999999999998774 8 899999999999999999999999999999999999999999999988765 1221
Q ss_pred ee-cc----CCCC----------cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 280 VS-HE----FGNG----------LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 280 ~~-~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
.. .. +... ......+.+||++..++++..+++++.+. |.+.+.++.+++++++++.+.+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~--g~~~~~~~~~~l~~~l~~~l~~~~~~ 301 (382)
T d2bkwa1 224 SKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEE--GLHKRWDLHREMSDWFKDSLVNGLQL 301 (382)
T ss_dssp HHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHhhhcccc
Confidence 10 00 0000 00122456899999999999999999875 99999999999999999999876554
Q ss_pred CcCCC--cc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc-
Q 012991 345 SLGSP--PE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH- 420 (452)
Q Consensus 345 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~- 420 (452)
....+ +. ....++.|..+ ++.++.+.|.+ +||.+..+... ...++.+||+.
T Consensus 302 ~~~~~~~~~~~s~~v~~~~~~---------~~~~~~~~L~~-~gi~i~~G~~~---------------~~~~~~~Ri~~~ 356 (382)
T d2bkwa1 302 TSVSRYPSNMSAHGLTAVYVA---------DPPDVIAFLKS-HGVVIAGGIHK---------------DIGPKYIRIGHM 356 (382)
T ss_dssp EESSCSSSTTBCSSCEEEECS---------CHHHHHHHHHH-TTEECBCCCCT---------------TTGGGEEEECCC
T ss_pred cccccCchhccCCcEEEEcCC---------CHHHHHHHHHH-CCeEEECCCCh---------------hhcCCEEEEeCC
Confidence 43322 22 23456677776 45678888865 69999765432 14467899994
Q ss_pred cccCCHHHHHHHHHHHHHHHh
Q 012991 421 QVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 421 ~~~~t~~di~~l~~~l~~~~~ 441 (452)
+..++.+||++++++|..+.+
T Consensus 357 G~~~~~e~i~~l~~~l~~i~~ 377 (382)
T d2bkwa1 357 GVTACNKNLPYMKNCFDLIKL 377 (382)
T ss_dssp GGGTSSTTCTHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 455567778888888766543
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=2.1e-32 Score=267.07 Aligned_cols=350 Identities=13% Similarity=0.139 Sum_probs=257.4
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 121 (452)
.|+ +++...+++|+++|... ..++++..+.+.++++++.|++++++++.+.|+++.|||.+++.++.++
T Consensus 20 l~~-PGP~~~~~~V~~Am~~~-------~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l--- 88 (388)
T d2ch1a1 20 MMG-PGPSNCSKRVLTAMTNT-------VLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--- 88 (388)
T ss_dssp CCS-SSSCCCCHHHHHHTTSC-------CCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH---
T ss_pred eee-CCCCCCCHHHHHHhCcC-------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHh---
Confidence 444 45666677799887432 2244667888999999999999999975455667788999999999988
Q ss_pred cccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCC
Q 012991 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITS 201 (452)
Q Consensus 122 ~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n 201 (452)
..++++|++....+.+. .+...+.+.+.....+..++....+ .+..++.+. ..+++++++++.+|
T Consensus 89 -----~~~~~~vl~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~v~~~~~~t 153 (388)
T d2ch1a1 89 -----LEEGDRVLIAVNGIWAE--RAVEMSERYGADVRTIEGPPDRPFS---LETLARAIE-----LHQPKCLFLTHGDS 153 (388)
T ss_dssp -----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTSCCC---HHHHHHHHH-----HHCCSEEEEESEET
T ss_pred -----ccccccccccccccccc--cchhhhhhhcccccccccccccccc---hhhhhhhhc-----cCCcceeeeeeccc
Confidence 57899999988887764 3333357778888877654322111 334444443 46789999999999
Q ss_pred CCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccC--CCCCc
Q 012991 202 MPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSD--MHHPV 279 (452)
Q Consensus 202 ~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~--l~~~~ 279 (452)
.+|...|+++|.++||++|+ ++++|+++++|..++|+..+++|++++|.|||++||+|+|+++.+++.++.. ...+.
T Consensus 154 ~tG~~~~~~~i~~~~~~~~~-~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~ 232 (388)
T d2ch1a1 154 SSGLLQPLEGVGQICHQHDC-LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKS 232 (388)
T ss_dssp TTTEECCCTTHHHHHHHTTC-EEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCC
T ss_pred ccccccchhhhcchhccccc-eeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCcc
Confidence 99999999999999999999 8999999999999999999999999999999999999999999998766540 00000
Q ss_pred eeccCC--------CCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc
Q 012991 280 VSHEFG--------NGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE 351 (452)
Q Consensus 280 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 351 (452)
...... ........+.++++...+.++..+++.+... +.....++.+.........+...........+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
T d2ch1a1 233 KVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEE--GLENQIKRRIECAQILYEGLGKMGLDIFVKDPR 310 (388)
T ss_dssp SCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGG
T ss_pred ccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhhhhcccccccCCHH
Confidence 000000 0000112334677777777777777777754 778777777777777777777663333333333
Q ss_pred -cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec-ccccCCHHHH
Q 012991 352 -ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS-HQVYNTLEDY 429 (452)
Q Consensus 352 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis-~~~~~t~~di 429 (452)
....++.|.+| ++.++.++...|.+++||.+..+..+ ..++.+||| ++.++|.|||
T Consensus 311 ~rs~~v~~~~~p------~g~~~~~l~~~l~~~~gI~v~~G~~~----------------~~~~~~RIs~~g~~~t~edI 368 (388)
T d2ch1a1 311 HRLPTVTGIMIP------KGVDWWKVSQYAMNNFSLEVQGGLGP----------------TFGKAWRVGIMGECSTVQKI 368 (388)
T ss_dssp GBCTTEEEEECC------TTCCHHHHHHHHHHHHCBCCBCCCGG----------------GTTTEEEEECCGGGCSHHHH
T ss_pred HhCCeEEEEECC------CCCCHHHHHHHHhhcCCEEEeCCCcc----------------ccCCEEEEcCCcCCCCHHHH
Confidence 33567889997 46788899988877789998766543 235689999 5778899999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
++++++|+++++.
T Consensus 369 ~~ll~alke~L~~ 381 (388)
T d2ch1a1 369 QFYLYGFKESLKA 381 (388)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=3.4e-32 Score=265.45 Aligned_cols=359 Identities=11% Similarity=0.112 Sum_probs=253.5
Q ss_pred cccCCCCCCCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH
Q 012991 14 VSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL 92 (452)
Q Consensus 14 ~~~~~~~~~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 92 (452)
+.+.-.|+..+.+.+..+++...+.++|.|..|.+. +.|+.+.+++.+.+.. +.. .|....+..++|++++++
T Consensus 6 ~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~----~~~--~Y~~~~G~~~lR~aia~~ 79 (388)
T d1j32a_ 6 RVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQ----GKT--RYGPAAGEPRLREAIAQK 79 (388)
T ss_dssp HHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHT----TCC--SCCCTTCCHHHHHHHHHH
T ss_pred HhhcCCcCHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCHHHHHHHHHHHhc----CCC--CCCCCCCCHHHHHHHHHH
Confidence 345556777888888888887778899999988776 5678899999887653 111 233344556666666665
Q ss_pred h----CCC-CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC
Q 012991 93 I----NAD-DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL 167 (452)
Q Consensus 93 ~----~~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~ 167 (452)
+ |.+ ++++|++|+|+++++..++.++ +++||+|++++|.|......+. ..|.+++.++.. .
T Consensus 80 ~~~~~g~~~~~~~i~it~G~~~al~~~~~~~--------~~~gd~Vlv~~P~y~~~~~~~~----~~~~~~v~~~~~--~ 145 (388)
T d1j32a_ 80 LQRDNGLCYGADNILVTNGGKQSIFNLMLAM--------IEPGDEVIIPAPFWVSYPEMVK----LAEGTPVILPTT--V 145 (388)
T ss_dssp HHHHHCCCCCGGGEEEESHHHHHHHHHHHHH--------CCTTCEEEEESSCCTHHHHHHH----HTTCEEEEECCC--G
T ss_pred HHHhcccCCCCceEEEcCCHHHHHHHHHHHH--------hCCCCEEEEcCCCcHHHHHHHH----HhcCeEEEEecc--c
Confidence 4 432 3689999999999999999987 5899999999999998765553 358888888542 1
Q ss_pred CChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc----ccc
Q 012991 168 ASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDV 239 (452)
Q Consensus 168 ~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~ 239 (452)
++...+ +++|++.+ .++++++++++|+||||.+++ +++|+++|+++|+ ++|+|++++..... ..+
T Consensus 146 ~~~~~~d~~~l~~~~------~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~-~iI~De~Y~~~~~~~~~~~s~ 218 (388)
T d1j32a_ 146 ETQFKVSPEQIRQAI------TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGL-WVLSDEIYEKILYDDAQHLSI 218 (388)
T ss_dssp GGTTCCCHHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCG
T ss_pred ccccCCCHHHHHHhC------CCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCe-EEEchhhhhcccccCCCCCCH
Confidence 122234 89999988 678999999999999999998 4567888999999 79999998643221 111
Q ss_pred ccc-----CccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 240 KEI-----GADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 240 ~~~-----~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
... +..+++.|++|. ++.+| +|+++.+++++.. + ... .......++...+. ++...
T Consensus 219 ~~~~~~~~~~~i~~~S~SK~-~~~~GlRvG~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~q~---a~~~~ 281 (388)
T d1j32a_ 219 GAASPEAYERSVVCSGFAKT-YAMTGWRVGFLAGPVPLVKA-A-TKI-----------QGHSTSNVCTFAQY---GAIAA 281 (388)
T ss_dssp GGSCHHHHHTEEEEEESTTT-TTCTTTCCEEEECCHHHHHH-H-HHH-----------HHTTTCSCCHHHHH---HHHHH
T ss_pred HHhCcccccceeEecCChhh-hhcchhHeEEEEECHHHHHH-H-HHh-----------hhhccccccHHHHH---HHhhc
Confidence 111 235788899996 66666 8999888877764 1 000 00001122222222 22333
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecc
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHY 392 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~ 392 (452)
+......++..++.++++++.+.+.|.+.+++.+..|++ ++++|+.++. ...+..++++.|.+++||.+.++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~g--g~~l~~~l~~-----~~~~~~~~~~~ll~~~gV~v~pG~ 354 (388)
T d1j32a_ 282 YENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG--AFYMFPSIAK-----TGRSSLDFCSELLDQHQVATVPGA 354 (388)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB--TTEECCBCGG-----GTCCHHHHHHHHHHHHCEECEEGG
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCc--eEEEEEECCC-----CCCCHHHHHHHHHHhCCEEEEecc
Confidence 322111366777788888999999998887888776655 7788887762 134667788887777799998877
Q ss_pred cCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 393 QAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+. .++++|++++ ++.+++++.+++|+++++
T Consensus 355 ~F~----------------~~~~~Rls~~--~~~e~l~~al~rl~~~l~ 385 (388)
T d1j32a_ 355 AFG----------------ADDCIRLSYA--TDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp GGT----------------CTTBEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred ccC----------------CCCeEEEEEe--CCHHHHHHHHHHHHHHHH
Confidence 762 3579999997 478889999999998875
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-31 Score=256.63 Aligned_cols=339 Identities=13% Similarity=0.071 Sum_probs=255.1
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 121 (452)
||-++++.+.|++|+++|... ..++++..+.+.++++++.++++++.+ .+.+++++|||.+++.++.++
T Consensus 2 ~L~~PGP~~v~~~V~~am~~~-------~~~hr~~~f~~i~~~~~~~l~~ll~~~-~~~i~~~gsgT~a~e~~~~nl--- 70 (348)
T d1iuga_ 2 WLLTPGPVRLHPKALEALARP-------QLHHRTEAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNL--- 70 (348)
T ss_dssp EECSSSSCCCCHHHHHHHHSC-------CCCTTSHHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHH---
T ss_pred cccCCCCCCCCHHHHHHhcCC-------CCCCCCHHHHHHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHhc---
Confidence 456667788888899988642 223455677889999999999999986 577888999999999999987
Q ss_pred cccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCC
Q 012991 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITS 201 (452)
Q Consensus 122 ~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n 201 (452)
+.+|++|++....+.+. .|...+++.+..+..+..++..... .+ . +. ..++++|+++|.+|
T Consensus 71 -----~~~g~~vlv~~~G~f~~--~~~~~a~~~~~~~~~~~~~~g~~~~---~~---~-~~-----~~~~~~v~~~h~eT 131 (348)
T d1iuga_ 71 -----FAPGERVLVPVYGKFSE--RFYEIALEAGLVVERLDYPYGDTPR---PE---D-VA-----KEGYAGLLLVHSET 131 (348)
T ss_dssp -----CCTTCEEEEEECSHHHH--HHHHHHHHTTCEEEEEECCTTCCCC---TT---T-SC-----CSSCSEEEEESEET
T ss_pred -----ccccccceeecchHHHH--HHHHHHHhcCcccccccccCCCccc---cc---c-cc-----ccCCCeeEEEecch
Confidence 58899999887776553 4555578899999888764321110 11 1 11 57889999999999
Q ss_pred CCcccccHHHHHHHHHHcC--CCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCc
Q 012991 202 MPCVVIPVRKLVKICRDEG--VDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPV 279 (452)
Q Consensus 202 ~tG~~~~l~~i~~l~~~~~--~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~ 279 (452)
.+|.+.|+++|.++|++++ . ++++|+++++|..+++++.+++|++++|.|||++||+|+|+++++++.+++ + .+.
T Consensus 132 stG~~~~i~~i~~~~~~~~~~~-l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~-~-~~~ 208 (348)
T d1iuga_ 132 STGALADLPALARAFKEKNPEG-LVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALER-L-KPR 208 (348)
T ss_dssp TTTEECCHHHHHHHHHHHCTTC-EEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHT-C-CCC
T ss_pred hhhhhccHHHHHHHHHhhhccc-eeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhh-h-ccc
Confidence 9999999999999999985 7 789999999999999999999999999999999999999999999988876 2 221
Q ss_pred eeccCCC----CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccc
Q 012991 280 VSHEFGN----GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAA 355 (452)
Q Consensus 280 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 355 (452)
. ..+.. .......+++||+...++++.++++.+.+. +.+.. ++.+.....++..+. ..++..... .....
T Consensus 209 ~-~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~--~~~~~-~~~~~~~~~~~~~~~-~~gl~~~~~-~~s~~ 282 (348)
T d1iuga_ 209 G-YYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR--LEEHL-ALKAWQNALLYGVGE-EGGLRPVPK-RFSPA 282 (348)
T ss_dssp S-STTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG--HHHHH-HHHHHHHHHHHHHHH-HTTCEESCS-SBCTT
T ss_pred c-cccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH--HhHHH-HHHHHHHHHHhhhhh-hhhhccChh-hcCCe
Confidence 0 00100 000122346799999999999999887653 44433 333333444444444 447765533 23345
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDA 435 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~ 435 (452)
++.|.+| ++.+..++.+.|.+ +||.+..+..+ ..+..+||+...+++.+|+++++++
T Consensus 283 v~~~~~P------~g~~~~~~~~~l~~-~gi~i~~G~~~----------------l~~~~~RIg~mG~~~~~d~~~~~~~ 339 (348)
T d1iuga_ 283 VAAFYLP------EGVPYARVKEAFAQ-RGAVIAGGQGP----------------LKGKVFRLSLMGAYDRYEALGVAGM 339 (348)
T ss_dssp CEEEECC------TTCCHHHHHHHHHT-TTEECEECCGG----------------GTTTEEEECCCSSCCHHHHHHHHHH
T ss_pred EEEEECC------CCCCHHHHHHHHHH-CCeEEEcCccc----------------cCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 7889998 57788899999976 59998766543 3356899999989999999999999
Q ss_pred HHHHHhc
Q 012991 436 VILLVEE 442 (452)
Q Consensus 436 l~~~~~~ 442 (452)
|++++++
T Consensus 340 l~~~l~~ 346 (348)
T d1iuga_ 340 FREVLEE 346 (348)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-31 Score=263.10 Aligned_cols=380 Identities=12% Similarity=-0.052 Sum_probs=269.3
Q ss_pred HHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCC----c
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVG----E 100 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~----~ 100 (452)
.+.|++++...+.+..+|........++.+.+.+.+.+.. |.... ..+...++..++.+++++++|+|+.+ .
T Consensus 41 ~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~---N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~ 117 (450)
T d1pmma_ 41 FQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINK---NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAV 117 (450)
T ss_dssp HHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTC---BTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCS
T ss_pred HHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhc---CCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence 4566777655555556666555567777777777765432 22221 12445778899999999999987422 3
Q ss_pred EEEecChhHHHHHHHHHhhcccccC----CCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HH
Q 012991 101 ISLVDNATTAAAIVLQQIGRGFTEG----RFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-IN 175 (452)
Q Consensus 101 i~~t~g~t~a~~~~~~~l~~~~~~~----~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~ 175 (452)
-.+|+|||+|+.+++.+..+++.+. .......++++...|.|..++ |+..|++++.+++. .+++.+ ++
T Consensus 118 G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Ka----a~~~gi~~~~v~~~---~~~~~~d~~ 190 (450)
T d1pmma_ 118 GTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKF----ARYWDVELREIPMR---PGQLFMDPK 190 (450)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHH----HHHTTCEEEECCCB---TTBCSCCHH
T ss_pred CeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHH----HHHcCCCceEeeec---CCCCcCcHH
Confidence 5899999999999998876544211 112234577777788776555 45579999999542 124566 99
Q ss_pred HHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHH------HHcCCCEEEEecccccCCcccccc-------cc
Q 012991 176 EFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKIC------RDEGVDQVFVDAAHAMGSIKIDVK-------EI 242 (452)
Q Consensus 176 ~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~------~~~~~~~~ivD~a~~~g~~~~~~~-------~~ 242 (452)
+|++++ .++|.+|+.+.++|.||.+.|+++|.++| +++|+| +|||+|++.+..+++.. ..
T Consensus 191 ~L~~~i------~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~-lHVDAA~gG~~~p~~~~~~~~~~~~~ 263 (450)
T d1pmma_ 191 RMIEAC------DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDID-MHIDAASGGFLAPFVAPDIVWDFRLP 263 (450)
T ss_dssp HHHHHC------CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCC-EEEECTTGGGTHHHHCTTCCCSTTST
T ss_pred HHHHHh------hhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcE-EEeehhhccceeeeechhhhhhhccc
Confidence 999999 68999999999999999999999888775 557995 99999998776654332 23
Q ss_pred CccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHH
Q 012991 243 GADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDG 322 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~ 322 (452)
++|++++|+|||+++|.|+|++++|+..... ....+...|.++........++.+...+.++...+..+... |+++
T Consensus 264 ~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~--~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~--G~~~ 339 (450)
T d1pmma_ 264 RVKSISASGHKFGLAPLGCGWVIWRDEEALP--QELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGRE--GYTK 339 (450)
T ss_dssp TEEEEEEETTTTTCCCSSCEEEEESSGGGSC--GGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHH--HHHH
T ss_pred ceeEeecChhhccCCCCCeeEEEecChhhhh--hhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHH--HHHH
Confidence 6999999999999999999999998655432 11111111222111122223444444555566666666654 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCc--ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWGTSLGSPP--EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQ 400 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~ 400 (452)
+.++..++++++.+.|.+.+++++..+. ....++++|++.+. ...+.+..++.+.|+++ |+.++....+..
T Consensus 340 ~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~--~~~~~~~~~l~~~L~~~-Gw~v~~~~~p~~---- 412 (450)
T d1pmma_ 340 VQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDG--EDPGYTLYDLSERLRLR-GWQVPAFTLGGE---- 412 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTT--CCCSSCHHHHHHHHHTT-TCBCCEEECCTT----
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCc--ccCCCCHHHHHHHHHHc-CCeeeccCcCCC----
Confidence 9999999999999999999888876442 23467899988632 11356778899999875 998876544322
Q ss_pred CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 401 PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 401 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
......+|+++...+|.+++++|++.|+++++.
T Consensus 413 ---------~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~ 445 (450)
T d1pmma_ 413 ---------ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 445 (450)
T ss_dssp ---------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------cCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 234568999999999999999999999999875
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=3.4e-30 Score=248.94 Aligned_cols=345 Identities=16% Similarity=0.132 Sum_probs=223.0
Q ss_pred CCCcHHHHHHHHHHHHHHhc--C--CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccccc
Q 012991 49 GSCPKSVLADQQKWQLKFLQ--Q--PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTE 124 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~ 124 (452)
+..++++++++.++...+.. . ..........++.+.+++.+|+++|+ +++++|+|||+|+.+++.++
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~---e~~~~t~g~t~a~~~~~~al------ 82 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC---DVARVTNGAREAKFAVMHSL------ 82 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS---SEEEEESSHHHHHHHHHHHH------
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCc---CEEEEECcHHHHHHHHHHHH------
Confidence 45677788888775432210 0 00000011223678899999999998 47899999999999999988
Q ss_pred CCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC
Q 012991 125 GRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP 203 (452)
Q Consensus 125 ~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t 203 (452)
.++||+|+++.++|++++.++ ...|++++.++..+ ..++.+ ++++++.+++..+ ..++++|++++++|++
T Consensus 83 --~~~gd~Vi~~~~~h~s~~~~~----~~~g~~v~~v~~~~--~~~~~i~~~~l~~~i~~~~k-~~~~~lv~i~~~~n~t 153 (364)
T d2e7ja1 83 --AKKDAWVVMDENCHYSSYVAA----ERAGLNIALVPKTD--YPDYAITPENFAQTIEETKK-RGEVVLALITYPDGNY 153 (364)
T ss_dssp --CCTTCEEEEETTCCHHHHHHH----HHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTT-TSCEEEEEEESSCTTT
T ss_pred --hCCCcEEEeecccccccchHH----HhccceEEEeeecc--ccccccCHHHHHhhhhhhcc-cCCceEEEeecCCCCC
Confidence 589999999999999988775 44699999996421 123334 8899998875422 3567899999999999
Q ss_pred cccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceecc
Q 012991 204 CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHE 283 (452)
Q Consensus 204 G~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~ 283 (452)
|.+.|+++|+++|++||+ ++|+|++|+.|..+.+...+++|++++|+||+++++.|+|+++.+++.++. +.... . .
T Consensus 154 G~~~~l~~I~~ia~~~~i-~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~-~~~~~-~-~ 229 (364)
T d2e7ja1 154 GNLPDVKKIAKVCSEYDV-PLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEI-VLRRS-E-K 229 (364)
T ss_dssp CCCCCHHHHHHHHHTTTC-CEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTT-TTCBC-S-S
T ss_pred ceeecchhheeccccccc-hhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHH-HHhhc-c-c
Confidence 999999999999999999 799999999999999988889999999999997777778999999888775 21111 0 0
Q ss_pred CCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCC
Q 012991 284 FGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPS 363 (452)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (452)
+.... .....++......+++.++++...+. .+.+.+. .++.+++.+.|.++ ++....+......++.+..+.
T Consensus 230 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~-~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~ 302 (364)
T d2e7ja1 230 YKNKE--VELLGCTARGATIITLMASFPHVRER---IKRWDEE-VEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEV 302 (364)
T ss_dssp CTTSB--GGGTTCCCCSHHHHHHHHHHHHHHHH---GGGHHHH-HHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHH
T ss_pred cCccc--ccccccccchhHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccc
Confidence 11110 01111233333444555555555442 2333332 45677788888876 554433322223344444321
Q ss_pred ccc--cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 364 RLR--VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 364 ~~~--~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
... .........+...|.. .++.... + .....+|++. +.+|++||++++++|+++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~---~----------------g~~~~~~~~~-~~~t~edid~~~~~l~ei~~ 361 (364)
T d2e7ja1 303 LYEISKKAKGGRFFLYRELKS-RKIHGIK---P----------------GLTRYFKLST-YGLSDEEVDYVLNAFKEIIE 361 (364)
T ss_dssp HHHHHHHSSSGGGHHHHHHHH-TTEECSC---T----------------TCCSEEEEEC-TTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhccchHHHHHHHh-cCCceec---C----------------CCcceEEEec-cCCCHHHHHHHHHHHHHHHH
Confidence 000 0000011123334433 3554311 1 1224677764 33589999999999999998
Q ss_pred cc
Q 012991 442 EG 443 (452)
Q Consensus 442 ~~ 443 (452)
+.
T Consensus 362 ~y 363 (364)
T d2e7ja1 362 KY 363 (364)
T ss_dssp HC
T ss_pred Hh
Confidence 74
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=5.4e-31 Score=256.46 Aligned_cols=361 Identities=16% Similarity=0.120 Sum_probs=247.6
Q ss_pred ccccccCCCCCCCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHH
Q 012991 11 THHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAV 89 (452)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (452)
++.+.++.+|+.+..+.+..+++...|..+|.|..|.+. +.|+.+.+++.+.+.. +. +.|....+..++|+.+
T Consensus 4 ~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~----~~--~~Y~~~~G~~~lR~~i 77 (382)
T d1b5pa_ 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQ----GK--TKYAPPAGIPELREAL 77 (382)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHT----TC--CSCCCTTCCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhc----CC--cCCCCCCCCHHHHHHH
Confidence 344555556666667766656666678899999998877 6788899999887653 11 2243444566677777
Q ss_pred HhHh----CCC-CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCC
Q 012991 90 KDLI----NAD-DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLP 164 (452)
Q Consensus 90 a~~~----~~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~ 164 (452)
++++ +.+ ++++|++|+|+++|+..++.++ +++||.|++++|.|+.....+ +..|.++..+++.
T Consensus 78 a~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l--------~~~gd~vl~~~P~y~~~~~~~----~~~g~~~~~v~~~ 145 (382)
T d1b5pa_ 78 AEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI--------LDPGDEVIVLSPYWVSYPEMV----RFAGGVVVEVETL 145 (382)
T ss_dssp HHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEECC
T ss_pred HhhhhhhcccccccccceecCCHHHHHHHHHHHh--------CCCCCEEEECCCCcHHHHHHH----HHhcCeEEEEecc
Confidence 7765 332 3789999999999999999987 589999999999999875554 5569999999752
Q ss_pred CCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc---c
Q 012991 165 FPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK---I 237 (452)
Q Consensus 165 ~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~ 237 (452)
. .+...+ .+++++.+ .++++++++++|+||||.+++ +++|+++|++|++ ++|.|++++....+ .
T Consensus 146 ~--~~~~~~d~~~l~~~~------~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~-~ii~De~y~~~~~~~~~~ 216 (382)
T d1b5pa_ 146 P--EEGFVPDPERVRRAI------TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDF-YLVSDEIYEHLLYEGEHF 216 (382)
T ss_dssp G--GGTTCCCHHHHHTTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBSSSCCC
T ss_pred c--ccccCCCHHHHHHhC------CCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCe-EEEEEccccceecCCCCC
Confidence 1 112223 78888887 678999999999999999997 5578889999999 79999998743211 1
Q ss_pred c--ccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH
Q 012991 238 D--VKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV 313 (452)
Q Consensus 238 ~--~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 313 (452)
. ....+-.+++.|++|. ++.+| +|+++.++++++. + ... .......++.....+...++...
T Consensus 217 ~~~~~~~~~~i~~~s~SK~-~~~~GlR~G~~~~~~~~i~~-~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 282 (382)
T d1b5pa_ 217 SPGRVAPEHTLTVNGAAKA-FAMTGWRIGYACGPKEVIKA-M-ASV-----------SRQSTTSPDTIAQWATLEALTNQ 282 (382)
T ss_dssp CGGGTCTTTEEEEEESTTT-TTCGGGCCEEEECCHHHHHH-H-HHH-----------HHTTTCSCCHHHHHHHHHHHHCH
T ss_pred CHHHcCCCCEEEEecchhh-ccCcHhheEEEEECHHHHHH-H-HHH-----------HHhcccCcccccccccccccccc
Confidence 1 0111234778899996 66666 8999988877664 1 110 00011222332222222222211
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeeccc
Q 012991 314 SRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ 393 (452)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~ 393 (452)
.....-.+..++.++.+++.+.+.+... ++++..|++ ++++|+.++. ...+...+.+.|.+ +||.+.++..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~g--g~~~~~~~~~-----~~~~~~~~~~~l~e-~gV~v~PG~~ 353 (382)
T d1b5pa_ 283 EASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSG--AFYVLMDTSP-----IAPDEVRAAERLLE-AGVAVVPGTD 353 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSB--TTEEEEECTT-----TCSSHHHHHHHHHH-TTEECEESGG
T ss_pred cchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEecCCc--eEEEeEeCCC-----CCCCHHHHHHHHHH-CCEEEEeCcc
Confidence 1100124555666777777888888776 777766655 7888888852 23467788888876 5999987766
Q ss_pred CCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 394 APKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+. ..+++|++++. ++++++..+++|+++
T Consensus 354 F~----------------~~~~iRis~~~--~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 354 FA----------------AFGHVRLSYAT--SEENLRKALERFARV 381 (382)
T ss_dssp GT----------------CTTEEEEECCS--CHHHHHHHHHHGGGG
T ss_pred cC----------------CCCeEEEEEcC--CHHHHHHHHHHHHHh
Confidence 52 34799999974 788899999888765
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=1.8e-30 Score=253.40 Aligned_cols=353 Identities=18% Similarity=0.158 Sum_probs=244.6
Q ss_pred CHHHHHhhhcc--CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------C
Q 012991 25 SEAEIRDEFSH--HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------A 95 (452)
Q Consensus 25 ~~~~ir~~~~~--~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~ 95 (452)
..+.||+.|.. ..+++|.|+.|.++ +.|+.+.+++.+.+.. +. ..|....+..++|++++++++ .
T Consensus 10 ~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~----~~--~~Y~~~~G~~~lr~aia~~~~~~~~~~~ 83 (388)
T d1gdea_ 10 SASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDK----GL--THYGPNIGLLELREAIAEKLKKQNGIEA 83 (388)
T ss_dssp CCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHT----TC--CSCCCTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred CccHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhc----Cc--cCCCCCcCCHHHHHHHHHHHHhhccccC
Confidence 34678887753 35679999988876 6678899998887653 11 124445566778888888763 2
Q ss_pred CCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-H
Q 012991 96 DDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-I 174 (452)
Q Consensus 96 ~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~ 174 (452)
.+.++|++|+|+++++.+++.++ +++||+|++++|.|......+. ..|.+++.+++.. ++...+ +
T Consensus 84 ~~~~~i~~t~G~~~~l~~~~~~l--------~~~gd~vlv~~P~y~~~~~~~~----~~g~~~~~~~~~~--~~~~~~d~ 149 (388)
T d1gdea_ 84 DPKTEIMVLLGANQAFLMGLSAF--------LKDGEEVLIPTPAFVSYAPAVI----LAGGKPVEVPTYE--EDEFRLNV 149 (388)
T ss_dssp CTTTSEEEESSTTHHHHHHHTTT--------CCTTCEEEEEESCCTTHHHHHH----HHTCEEEEEECCG--GGTTCCCH
T ss_pred CChheeeeccCcchHHHHHHHHh--------cCCCCEEEECCCCcHHHHHHHH----HcCCEEEEeeccc--ccCCCCCH
Confidence 23578999999999999999876 6899999999999998766654 4599999996521 122233 8
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cc---cccc-cC
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KI---DVKE-IG 243 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~---~~~~-~~ 243 (452)
++|++.+ +++++++++++|+||||.+++ +++|+++|++|++ ++|+|++|+.... .. .+.. .+
T Consensus 150 ~~l~~~~------~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~-~vi~De~y~~~~~~~~~~~~~~~~~~~~~ 222 (388)
T d1gdea_ 150 DELKKYV------TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDL-IVISDEVYEHFIYDDARHYSIASLDGMFE 222 (388)
T ss_dssp HHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred HHHHHhC------ccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCC-EEEEEcCChhhhhccCCCCChhhccCCCC
Confidence 9999988 678999999999999999987 5568888999999 7999999864321 11 1111 12
Q ss_pred ccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHH
Q 012991 244 ADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID 321 (452)
Q Consensus 244 ~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~ 321 (452)
..+++.|++|. +|.+| +|++++.++++.. + .... .......+...+.+...++..... ...++
T Consensus 223 ~~i~~~S~SK~-~~~~GlR~G~ii~~~~~~~~-~-~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 287 (388)
T d1gdea_ 223 RTITVNGFSKT-FAMTGWRLGFVAAPSWIIER-M-VKFQ-----------MYNATCPVTFIQYAAAKALKDERS-WKAVE 287 (388)
T ss_dssp GEEEEEESTTT-TTCGGGCCEEEECCHHHHHH-H-HHHH-----------HTTTCSCCHHHHHHHHHHHTCHHH-HHHHH
T ss_pred eEEEEeCChhh-ccCccccEEEEEeeccchhh-h-hhcc-----------ccccccccccchhhHHHHHhhccc-hhHHH
Confidence 35788899996 66555 8999988877665 1 1110 000122222222223333321110 01245
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
..++++.+....+.+.|... ++....|.+ +.++|+.+++ .+.+..++++.|.+++||.+.++..+..
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~-~~~~~~p~g--g~fl~~~l~~-----~~~~~~~~~~~ll~e~gV~v~PG~~F~~----- 354 (388)
T d1gdea_ 288 EMRKEYDRRRKLVWKRLNEM-GLPTVKPKG--AFYIFPRIRD-----TGLTSKKFSELMLKEARVAVVPGSAFGK----- 354 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCCCCCCB--TTEECCBCGG-----GTCCHHHHHHHHHHHTCEECEEGGGGCG-----
T ss_pred HHHHHHHHhhhhhhhhhhhc-cccccCCCc--eEEEEEECCC-----CCCCHHHHHHHHHHhCCEEEEechhhCC-----
Confidence 55666677777788888765 566655554 7788888762 2457788888877777999987766532
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
..++++|+|++. +.++++..+++|++++++.
T Consensus 355 ---------~~~~~iRis~~~--~~e~l~~al~rL~~~l~e~ 385 (388)
T d1gdea_ 355 ---------AGEGYVRISYAT--AYEKLEEAMDRMERVLKER 385 (388)
T ss_dssp ---------GGTTBEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred ---------CCCCEEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 346799999973 7889999999999999875
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=3.2e-29 Score=242.63 Aligned_cols=332 Identities=15% Similarity=0.125 Sum_probs=236.8
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
.++|.|..|.++ ++|+.+.+++.+.+... ..|....+..++|++||++++++ +++|++|+|+++++..++.
T Consensus 25 ~~~I~ls~g~p~~~~p~~i~~al~~~l~~~-------~~Y~~~~G~~elr~aiA~~~~~~-~~~Iiit~G~~~al~~~~~ 96 (368)
T d1v2da_ 25 LGAVNLGQGFPSNPPPPFLLEAVRRALGRQ-------DQYAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLLQ 96 (368)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTTTS-------CSCCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHH
T ss_pred CCCEEecCCCCCCCCCHHHHHHHHHHhhcc-------cCCCCCcCCHHHHHHHHhhcccC-CcceeeccchHHHHHHHhh
Confidence 357899887776 67788999988865432 12344455788999999999996 8999999999999999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++ .+++|.|+++.|.|+.....+. ..|.+++.++++... +...+ .+.+++++ .+++++++
T Consensus 97 ~l--------~~~~d~v~~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~-~~~~~d~~~l~~~~------~~~~~~i~ 157 (368)
T d1v2da_ 97 SL--------VGPGDEVVVLEPFFDVYLPDAF----LAGAKARLVRLDLTP-EGFRLDLSALEKAL------TPRTRALL 157 (368)
T ss_dssp HH--------CCTTCEEEEEESCCTTHHHHHH----HTTCEEEEEECEEET-TEEECCHHHHHTTC------CTTEEEEE
T ss_pred cc--------ccccccccccCCcchhhhhHHH----hcCCccceecccccc-ccccCCHHHHHHhh------ccCceEEE
Confidence 87 5889999999999998766654 458888888663221 22233 88899888 67899999
Q ss_pred EeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccccc-----cccCccEEEEcCcccCcCCCC--cEEEE
Q 012991 196 IDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKIDV-----KEIGADFYVSNLHKWFFCPPS--VAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~-----~~~~~d~~~~s~~K~l~g~~G--~G~l~ 265 (452)
+++|+||||.+++ +++|+++|++||+ ++++|++++........ ......+++.|++|. ++.+| +|+++
T Consensus 158 ~~~p~NPtG~~~~~~~l~~l~~~a~~~~i-~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~-~~~~G~R~g~~~ 235 (368)
T d1v2da_ 158 LNTPMNPTGLVFGERELEAIARLARAHDL-FLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKR-LEATGYRVGWIV 235 (368)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHH-TTCGGGCCEEEE
T ss_pred EcCCCCcccccCCHHHHHHHHHHHHHcCC-eeeechhhhhhcccccccccccccccccceeeccccc-cccccccccccc
Confidence 9999999999997 6678889999999 79999988754332211 111344566777775 55555 78888
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
.+++++.. + ... ...+....+...+.++..++..... ....+.+++.++++++++.+.|.+. |++
T Consensus 236 ~~~~~~~~-~-~~~-----------~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 300 (368)
T d1v2da_ 236 GPKEFMPR-L-AGM-----------RQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAM-GLR 300 (368)
T ss_dssp CCTTTHHH-H-HHH-----------HHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred ccccccch-h-hhh-----------hhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhc-CcE
Confidence 88877764 1 111 0111122333333344444443332 1246777788889999999999887 888
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+..|++ ++++|+.++ +.+..+ .|. ++||.+.++..+... ....+++|+|++ ++
T Consensus 301 ~~~p~g--~~~~~~~l~-------~~~~~~---ll~-~~gI~v~pg~~F~~~------------~~~~~~iRis~~--~~ 353 (368)
T d1v2da_ 301 VYVPEG--TYFLMAELP-------GWDAFR---LVE-EARVALIPASAFYLE------------DPPKDLFRFAFC--KT 353 (368)
T ss_dssp EECCSB--SSEEEEECT-------TCCHHH---HHH-HTCEECEEGGGGCSS------------SCCTTEEEEECC--SC
T ss_pred EecCCc--eeEEEEeCC-------ccHHHH---HHH-hCCEEEEechhhCCC------------CCCCCEEEEEec--CC
Confidence 777765 778999886 344443 354 469999877655321 134689999986 48
Q ss_pred HHHHHHHHHHHHHHH
Q 012991 426 LEDYEKFRDAVILLV 440 (452)
Q Consensus 426 ~~di~~l~~~l~~~~ 440 (452)
++++++.+++|++++
T Consensus 354 ~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 354 EEELHLALERLGRVV 368 (368)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999999864
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=1.9e-28 Score=237.84 Aligned_cols=345 Identities=14% Similarity=0.189 Sum_probs=239.9
Q ss_pred CCCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CC
Q 012991 21 TRCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NA 95 (452)
Q Consensus 21 ~~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~ 95 (452)
+.++.+++..++.-..++.+|.|+.|.++ +.|+.+++++.+.+.. +. ..|....+..++|+++++++ +.
T Consensus 11 ~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~----~~--~~Y~~~~G~~~lR~aia~~~~~~~~~ 84 (375)
T d1o4sa_ 11 SKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQK----GE--VKYTDPRGIYELREGIAKRIGERYKK 84 (375)
T ss_dssp CSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTT----CC--CCCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHCCCCeEECCCcCCCCCCCHHHHHHHHHHHhc----CC--cCCCCCcCCHHHHHHHHhhhhhcccc
Confidence 44566777777766678889999998877 5678888888876532 21 22444455666777777665 33
Q ss_pred C-CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-
Q 012991 96 D-DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI- 173 (452)
Q Consensus 96 ~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~- 173 (452)
+ +++++++|+|+++|+..++.++ +++||+|++++|.|+...... ...+..+..+++. .+....+
T Consensus 85 ~~~~~~i~~t~G~~~al~~~~~~l--------~~~gd~vlv~~P~y~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~ 150 (375)
T d1o4sa_ 85 DISPDQVVVTNGAKQALFNAFMAL--------LDPGDEVIVFSPVWVSYIPQI----ILAGGTVNVVETF--MSKNFQPS 150 (375)
T ss_dssp CCCGGGEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECC--GGGTTCCC
T ss_pred ccccccccccCcHHHHHHHHHHHH--------hCCCCEEEEccCccccchhhh----hcccccccccccc--ccccccch
Confidence 2 3789999999999999999988 589999999999999875554 4458888877642 1122222
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc------c-ccccC
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI------D-VKEIG 243 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~------~-~~~~~ 243 (452)
.+.++... ..+++++++++|+||||.+++ +++|+++|++|++ ++|.|+++....... . ....+
T Consensus 151 ~~~~~~~~------~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~ 223 (375)
T d1o4sa_ 151 LEEVEGLL------VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNF-YIISDEVYDSLVYTDEFTSILDVSEGFD 223 (375)
T ss_dssp HHHHHHTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTSBCSSCCCCHHHHCSSST
T ss_pred hHHHHHhh------ccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCC-ceehHhhhccccccccccccccccCCCC
Confidence 56666655 678999999999999999987 4567888999999 799999876543211 1 11224
Q ss_pred ccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHH
Q 012991 244 ADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID 321 (452)
Q Consensus 244 ~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~ 321 (452)
..+++.|++|. ++.+| +|+++..++.+.. + .... . .............+..... ....
T Consensus 224 ~~i~~~S~SK~-~~l~G~R~G~~~~~~~~~~~-~-~~~~-----------~---~~~~~~~~~~~~~~~~~~~---~~~~ 283 (375)
T d1o4sa_ 224 RIVYINGFSKS-HSMTGWRVGYLISSEKVATA-V-SKIQ-----------S---HTTSCINTVAQYAALKALE---VDNS 283 (375)
T ss_dssp TEEEEEESTTT-TTCGGGCCEEEECCHHHHHH-H-HHHH-----------H---HHTCSCCHHHHHHHHHHTT---CCCH
T ss_pred CEEEEeechhh-ccCCccccccccccccchhh-h-hhhh-----------c---cccccccccchhhhhhhcc---cchh
Confidence 56788899996 66556 8999888877764 1 1100 0 0111111111222222322 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
...+..++.++.+.+.|.+. |+++..|.+ ++++|+.++ + +..++...|.+++||.+.++..+
T Consensus 284 ~~~~~~~~r~~~~~~~l~~~-g~~~~~p~g--g~f~~~~~~-------~-~~~~~~~~ll~~~gV~v~pG~~F------- 345 (375)
T d1o4sa_ 284 YMVQTFKERKNFVVERLKKM-GVKFVEPEG--AFYLFFKVR-------G-DDVKFCERLLEEKKVALVPGSAF------- 345 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCCCCCSB--SSEEEEECS-------S-CHHHHHHHHHHHHCEECEEGGGG-------
T ss_pred hhHHHHHHHHHHHHHHHHhc-CceEecCCc--cEEEEEECC-------C-CHHHHHHHHHHhCCEEEEEcccc-------
Confidence 67777888888899999876 888776655 788999886 2 33455666555579999887765
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
..++++||+++ ++++++++.+++|+++++
T Consensus 346 ---------~~~g~iRis~~--~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 346 ---------LKPGFVRLSFA--TSIERLTEALDRIEDFLN 374 (375)
T ss_dssp ---------TCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred ---------CCCCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 23579999997 378899999999999875
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=1.1e-27 Score=237.45 Aligned_cols=388 Identities=12% Similarity=0.053 Sum_probs=258.3
Q ss_pred CCCCCCCCCHHHHHhhhcc-CCCCeE------EeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHH
Q 012991 17 KPKLTRCISEAEIRDEFSH-HQHGVA------RINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAA 88 (452)
Q Consensus 17 ~~~~~~~~~~~~ir~~~~~-~~~~~~------~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 88 (452)
.+.|....+++++-+++.. ..++.+ |++.-..+..+..++-.+-... ++.+...+ .+....++..++.++
T Consensus 44 ~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~~~~~~~~~~l~~~~~~~--~n~n~~~~~~sp~~t~iE~~v~~w 121 (476)
T d1js3a_ 44 ATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGA--IGCIGFSWAASPACTELETVMMDW 121 (476)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHH--HCCCCSSGGGCHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHh--hcccccchhhhhhHHHHHHHHHHH
Confidence 3445566677776665531 111222 4443434445554444433222 23333322 345567788899999
Q ss_pred HHhHhCCCC--------CCcEEEecChhHHHHHHHHHhhcccccC------CCC-----CCCEEEEeCCcchhHHHHHHH
Q 012991 89 VKDLINADD--------VGEISLVDNATTAAAIVLQQIGRGFTEG------RFH-----RNDTVLMLHCAFQAVKKSIQA 149 (452)
Q Consensus 89 la~~~~~~~--------~~~i~~t~g~t~a~~~~~~~l~~~~~~~------~~~-----~g~~Vl~~~~~~~s~~~~~~~ 149 (452)
+++++|.++ ....++|+|||+|+..++.+....+... ... +.-.|++++..|+|+.++...
T Consensus 122 l~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~ 201 (476)
T d1js3a_ 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLI 201 (476)
T ss_dssp HHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHH
T ss_pred HHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHh
Confidence 999999862 1356899999999999887654322100 000 112577889999999888765
Q ss_pred HHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEec
Q 012991 150 YVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDA 228 (452)
Q Consensus 150 ~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~ 228 (452)
+ |..++.+ +.++++.+ +++|+++|++....+..|.+|+.+.+++.+|.+.|+++|+++|++||+ ++|||+
T Consensus 202 l----Gl~~~~v----~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~-wlHVDA 272 (476)
T d1js3a_ 202 G----GVKLKAI----PSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDI-WLHVDA 272 (476)
T ss_dssp H----TCEEEEE----CCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTC-EEEEEC
T ss_pred c----CceEEEe----ccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCc-EEEEec
Confidence 4 9999888 55666777 999999998776667788999999999999999999999999999999 599999
Q ss_pred ccccCCccccccc------cCccEEEEcCcccCcCCCCcEEEEEecCcccc---CCCCCceeccC-CCCcc---cccccc
Q 012991 229 AHAMGSIKIDVKE------IGADFYVSNLHKWFFCPPSVAFLYCRKSILSS---DMHHPVVSHEF-GNGLP---IESAWI 295 (452)
Q Consensus 229 a~~~g~~~~~~~~------~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~---~l~~~~~~~~~-~~~~~---~~~~~~ 295 (452)
|++......+-.+ ..+|+++.++|||++.|.++|++++|+..... .....+..... +.... ......
T Consensus 273 A~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (476)
T d1js3a_ 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLP 352 (476)
T ss_dssp TTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSC
T ss_pred ccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccccccccccccccc
Confidence 9876654432211 15899999999999999999999998632211 00111111100 11110 111111
Q ss_pred cccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHH
Q 012991 296 GTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 296 ~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
++... ..+.++.++..+... |++++.++..++++++.+.|.+.+++++..++. .++++|++.. .+.-..+
T Consensus 353 ~sr~~-~al~lw~~l~~~G~~--g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~--l~iV~Fr~~~-----~d~~n~~ 422 (476)
T d1js3a_ 353 LGRRF-RSLKMWFVFRMYGVK--GLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT--LGLVCFRLKG-----SDGLNEA 422 (476)
T ss_dssp SCCCC-THHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC--SSEEEEEESS-----CHHHHHH
T ss_pred cchhh-HHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCc--eEEEEEEccC-----ChHHHHH
Confidence 22332 234456677776654 899999999999999999999999999888776 7789998852 1222357
Q ss_pred HHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc-ccCCHHHHHHHHHHHHHHHhc
Q 012991 376 LRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ-VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+.|.+...+++..... .+..++|+++. +.+|++||+.+++.|+++.++
T Consensus 423 l~~~l~~~G~~~~s~t~~-----------------~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ 473 (476)
T d1js3a_ 423 LLERINSARKIHLVPCRL-----------------RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (476)
T ss_dssp HHHHHHHHTSCBCEEEEE-----------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEeeeeE-----------------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 888887763344432221 22458999986 557899999999999998764
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.96 E-value=7.1e-28 Score=235.15 Aligned_cols=353 Identities=10% Similarity=0.017 Sum_probs=231.6
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CC
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DV 98 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~ 98 (452)
-++.+.+..+..+++++.|..|.+. +.|+.|++++.+.+..- ...|..+ ..++|+++++++ |.+ ++
T Consensus 18 k~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~----~~~Y~~g----~~~Lr~aia~~~~~~~g~~~~~ 89 (394)
T d1c7na_ 18 KWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDET----VLGYTGP----TEEYKKTVKKWMKDRHQWDIQT 89 (394)
T ss_dssp HHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHC----CCSSBCC----CHHHHHHHHHHHHHHHCCCCCG
T ss_pred HHHHHHHHhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCC----CcCCCCC----CHHHHHHHHHHHHHhcCCCCCC
Confidence 3677777777778899999998887 67888999999887541 1122222 234566666654 543 36
Q ss_pred CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHH
Q 012991 99 GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l 177 (452)
++|++|+|+++++.+++.++ +++||+|++..|.|....... ...|.+.+.++... .+....+ .+.+
T Consensus 90 ~~I~vt~G~~~al~~~~~~~--------~~pgd~vi~~~p~~~~~~~~~----~~~g~~~v~~~~~~-~~~~~~~d~~~~ 156 (394)
T d1c7na_ 90 DWIINTAGVVPAVFNAVREF--------TKPGDGVIIITPVYYPFFMAI----KNQERKIIECELLE-KDGYYTIDFQKL 156 (394)
T ss_dssp GGEEEESSHHHHHHHHHHHH--------CCTTCEEEECSSCCTHHHHHH----HTTTCEEEECCCEE-ETTEEECCHHHH
T ss_pred cceEeeccchhhhhhhhccc--------cccccccccccCcccchhhHH----hhhhhccccccccc-ccccccchhhhh
Confidence 89999999999999999987 699999999999998875554 44577777664311 1111222 5666
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCcc----cc----c-cccCcc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSIK----ID----V-KEIGAD 245 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~----~-~~~~~d 245 (452)
+..+. +++++++++++|+||||.+++. ++|+++|+++++ ++|+|++++....+ .. . ......
T Consensus 157 ~~~~~-----~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~-~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 230 (394)
T d1c7na_ 157 EKLSK-----DKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDL-MLWSDEIHFDLIMPGYEHTVFQSIDEQLADKT 230 (394)
T ss_dssp HHHHT-----CTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSC-EEEEECTTTTCBCTTCCCCCGGGSCHHHHTTE
T ss_pred hhhhc-----cccceEEEecccccccceeccHHHhhhhhccccccce-eEeccccccccccCCccccchhhhhcccccce
Confidence 66663 5789999999999999999985 467888999999 79999998643211 00 0 011345
Q ss_pred EEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 246 FYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
+++.|++|. ++.+| +|++++.+..+.. ...... ....+.+... ....++...........+.+
T Consensus 231 i~~~s~SK~-~~~~G~R~g~~~~~~~~i~~-~~~~~~-----------~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 295 (394)
T d1c7na_ 231 ITFTAPSKT-FNIAGMGMSNIIIKNPDIRE-RFTKSR-----------DATSGMPFTT--LGYKACEICYKECGKWLDGC 295 (394)
T ss_dssp EEEECSHHH-HTCGGGCCEEEECCCHHHHH-HHHHHH-----------HHTTCCCCCH--HHHHHHHHHHHHCHHHHHHH
T ss_pred eeccccccc-ccccccccccccccChhhhh-hhhhhh-----------hhcccccccc--ccchhhhhhhcchhhhhccc
Confidence 777899996 66666 6777776654432 000000 0001111111 11111211111111124555
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANA-WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
++...+.++.+.+.+... +++....|++ ++++|+.++. .+.+..++++.|.+++||.+.++..+..
T Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~g--~~~~~~~~~~-----~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~------ 362 (394)
T d1c7na_ 296 IKVIDKNQRIVKDFFEVNHPEIKAPLIEG--TYLQWIDFRA-----LKMDHKAMEEFMIHKAQIFFDEGYIFGD------ 362 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSBCCCCSB--SSEEEEECGG-----GCCCHHHHHHHHHHTTCCCCEEGGGGCG------
T ss_pred ccccchhhhhhhhhhhccccceeecCCCc--eeEEEEECCC-----CCCCHHHHHHHHHHhCCEEEEcchhhCC------
Confidence 666666667777777654 3555555554 7788888862 1457788999887778999987776632
Q ss_pred CCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 403 AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+++|||++. +.++|+..+++|++++++
T Consensus 363 --------~~~~~iRis~~~--~~e~i~eal~rl~~~l~~ 392 (394)
T d1c7na_ 363 --------GGIGFERINLAA--PSSVIQESLERLNKALKD 392 (394)
T ss_dssp --------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCEEEEEEeC--CHHHHHHHHHHHHHHHHh
Confidence 345799999973 788899999999988764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=3.8e-28 Score=237.09 Aligned_cols=347 Identities=13% Similarity=0.107 Sum_probs=231.5
Q ss_pred hccCCCCeEEeccCCCC----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEE
Q 012991 33 FSHHQHGVARINNGSFG----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISL 103 (452)
Q Consensus 33 ~~~~~~~~~~l~~~~~~----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~ 103 (452)
....|+.+++|+.|.+. ++|+.+.+++.+.+.. +.. .|....+..++|+++++++ |.+ +++++++
T Consensus 25 l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~----~~~--~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i 98 (395)
T d1xi9a_ 25 LEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKE----GHN--YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRV 98 (395)
T ss_dssp HHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHT----TCC--SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred HHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhc----CCC--CCCCCCCCHHHHHHHHHhhhhccccccccccccc
Confidence 33457889999988752 5778899999887643 112 2333445566666666665 443 3689999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|+++++.+++.++ ..+||+|++++|.|+.....+ +..|.+++.++... .+...+ .+++++.+
T Consensus 99 ~~G~~~~~~~~~~~~--------~~~Gd~vlv~~P~y~~~~~~~----~~~g~~~v~v~~~~--~~~~~~d~~~~~~~~- 163 (395)
T d1xi9a_ 99 TAAVTEALQLIFGAL--------LDPGDEILVPGPSYPPYTGLV----KFYGGKPVEYRTIE--EEDWQPDIDDIRKKI- 163 (395)
T ss_dssp ESHHHHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEEEEG--GGTSEECHHHHHHHC-
T ss_pred ccccchhhhhhhhhh--------cCCCCEEEEcCCccccchhhh----hhcCCEEEEEeccc--cccccchHHHHHHhh-
Confidence 999999999999987 589999999999998765544 55699998886421 112223 78888888
Q ss_pred ccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCcc------ccccccCccEEEEcCcc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSIK------IDVKEIGADFYVSNLHK 253 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~~------~~~~~~~~d~~~~s~~K 253 (452)
.++++++++++|+||||.+++. ++|+++|++|++ +++.|++++..... .......-.+++.|++|
T Consensus 164 -----~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK 237 (395)
T d1xi9a_ 164 -----TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEI-PVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSK 237 (395)
T ss_dssp -----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-CEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTT
T ss_pred -----cccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCe-eEEeccccccccccccccchhhcCCCCCEEEEeCcch
Confidence 6789999999999999999984 578889999999 69999987643221 11122223477789999
Q ss_pred cCcCCCC--cEEEEEecC--ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 254 WFFCPPS--VAFLYCRKS--ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 254 ~l~g~~G--~G~l~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
. ++.+| +|++++... .+.. +...... .......++...+.++ ...+.....-++..++.+++
T Consensus 238 ~-~~~~GlRvG~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~q~a~---~~~l~~~~~~~~~~~~~~~~ 303 (395)
T d1xi9a_ 238 V-YFATGWRLGYMYFVDPENKLSE-VREAIDR---------LARIRLCPNTPAQFAA---IAGLTGPMDYLKEYMKKLKE 303 (395)
T ss_dssp T-TCCGGGCCEEEEEECTTCTTHH-HHHHHHH---------HHHHTCCSCSHHHHHH---HHHHHSCCHHHHHHHHHHHH
T ss_pred h-cccchhhcEeeEecCHHHHHHH-HHHHHHH---------hhcCCCCcCHHHHHHH---HHHhcCCHHHHHHHHHHHHH
Confidence 6 66666 788776432 2111 0000000 0000112222232222 22222111125666777888
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++.+.+.|.+++++.+..|++ ++++|+.++.. ...+..+++..|.+++||.+.++..+..
T Consensus 304 ~~~~l~~~L~~~~~~~~~~p~g--g~~~~~~l~~~----~~~~~~~~~~~ll~~~gV~v~PG~~Fg~------------- 364 (395)
T d1xi9a_ 304 RRDYIYKRLNEIPGISTTKPQG--AFYIFPKIEVG----PWKNDKEFVLDVLHNAHVLFVHGSGFGE------------- 364 (395)
T ss_dssp HHHHHHHHHHTSTTEECCCCCB--SSEECCEECSC----SCSSHHHHHHHHHHHHCEECEEGGGGCG-------------
T ss_pred HHHHHHHHHHhCCCceecCCCe--eEEEeEECCCC----CCCCHHHHHHHHHHhCCEEEEcChhhCC-------------
Confidence 9999999999876566665555 77888777521 1234556676666667999987776632
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+++||+++ ++.++++..++.|++++++
T Consensus 365 -~~~~~~Ris~~--~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 365 -YGAGHFRAVFL--PPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp -GGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 33679999986 3788899999999998864
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=7e-27 Score=227.42 Aligned_cols=342 Identities=12% Similarity=0.113 Sum_probs=242.9
Q ss_pred CCCeEEeccCCC-CC-CcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSF-GS-CPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~-~~-~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
++.+++|..+.+ |. ..+.|.+++.+.+..+....... ...+..+..+++++.+++++|. +.++++++|++|+..
T Consensus 44 G~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~---e~al~~~SG~~An~~ 120 (401)
T d1fc4a_ 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM---EDAILYSSCFDANGG 120 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHT
T ss_pred CCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcC---CceEEecchhhhhHH
Confidence 455677755433 32 24559999999888775443332 2344567789999999999998 488999999999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ ..++|.|+++...|.+...+. ...+.++..+ +..+ .+++++.+++....+.+..+
T Consensus 121 ~i~~l--------~~~~d~i~~d~~~h~s~~~G~----~~~~a~~~~~----~~~d----~~~le~~~~~~~~~~~~~~l 180 (401)
T d1fc4a_ 121 LFETL--------LGAEDAIISDALNHASIIDGV----RLCKAKRYRY----ANND----MQELEARLKEAREAGARHVL 180 (401)
T ss_dssp THHHH--------CCTTCEEEEETTCCHHHHHHH----HTSCSEEEEE----CTTC----HHHHHHHHHHHHHTTCSSEE
T ss_pred HHHHh--------cCCCcEEEeCCcchHHHHccc----cccCceEEEE----cCCC----hHHHHHHHHHhhhcccCceE
Confidence 99987 478999999999999987665 3457788777 4444 23444443333223567789
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc-------c-cccCccEEEEcCcccCcCCCCcEEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID-------V-KEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~-------~-~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
|++++..++.|.+.|+++|.++|++||+ ++++|++|+.|..... . ....+|+++++++|.++|+.| |++.
T Consensus 181 iv~egv~s~~G~~~~L~~l~~L~~~~~a-~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G-g~v~ 258 (401)
T d1fc4a_ 181 IATDGVFSMDGVIANLKGVCDLADKYDA-LVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTA 258 (401)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTE-EEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEE
T ss_pred EEEcCCCCCCCchhhhhHHHHHHhhcCc-EEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCc-cccc
Confidence 9999999999999999999999999999 8999999998765321 0 112589999999998766665 8888
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
.+.++++. + .... ....+....+.....+...+++.+. ..+..+++++++.+++++.+... ++.
T Consensus 259 g~~~~~~~-l-~~~~---------~~~~~s~~l~p~~~~aa~~~l~~~~----~~~~~~~~l~~~~~~~~~~l~~~-g~~ 322 (401)
T d1fc4a_ 259 ARKEVVEW-L-RQRS---------RPYLFSNSLAPAIVAASIKVLEMVE----AGSELRDRLWANARQFREQMSAA-GFT 322 (401)
T ss_dssp ECHHHHHH-H-HHHC---------HHHHHSCCCCHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred CCHHHHHH-H-HcCC---------hhhhhcCCCCHHHHHHHHhhhcccc----cCHHHHHHHHHHHHHHHhhhccc-CCc
Confidence 88888764 1 1110 0011122233333333444555444 34677899999999999999887 665
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+...+ ++++.+.+. +.....++.+.|.++ ||++.....|.. ......||++++..+|
T Consensus 323 ~~~~~---~pIv~v~~~------~~~~a~~~~~~L~~~-Gi~v~~i~~PtV-------------p~g~~~lRi~~~a~hT 379 (401)
T d1fc4a_ 323 LAGAD---HAIIPVMLG------DAVVAQKFARELQKE-GIYVTGFFYPVV-------------PKGQARIRTQMSAAHT 379 (401)
T ss_dssp BCCSS---SSEEEEEEE------CHHHHHHHHHHHHHT-TEECCEECTTSS-------------CTTCEEEEEECCTTCC
T ss_pred cCCCC---CCEEEEEEC------CHHHHHHHHHHHHHC-CceEEeECCCCC-------------CCCCceEEEEECCCCC
Confidence 54433 456655554 345667899999775 999876544322 1334579999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
++||++++++|+++.++
T Consensus 380 ~edId~~v~al~ev~~~ 396 (401)
T d1fc4a_ 380 PEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999865
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.96 E-value=1.1e-27 Score=236.35 Aligned_cols=355 Identities=13% Similarity=0.117 Sum_probs=229.3
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHh-cCC----chhhhhhhhHHHHHHHHHHHhHhC------CC-CCCcEEEec
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFL-QQP----DDFYFNSLRKGILESRAAVKDLIN------AD-DVGEISLVD 105 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~la~~~~------~~-~~~~i~~t~ 105 (452)
.++|.|+.+........+.+.+.+...... ... .....|....+..++|++||++++ .+ ++++|++|+
T Consensus 36 ~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~ 115 (428)
T d1iaya_ 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG 115 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred CceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcC
Confidence 469999888766666655555543211000 000 011223444456678888887753 21 378999999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKG 184 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~ 184 (452)
|+++++.+++.++ +.+||+|++++|.|++....+. ...|++++.+++.. .+...+ .+.++.+++..
T Consensus 116 G~~~al~~~~~~l--------~~~Gd~Vlv~~P~y~~~~~~~~---~~~g~~~v~v~~~~--~~~~~~d~~~~~~~~~~~ 182 (428)
T d1iaya_ 116 GATGANETIIFCL--------ADPGDAFLVPSPYYPAFNRDLR---WRTGVQLIPIHCES--SNNFKITSKAVKEAYENA 182 (428)
T ss_dssp HHHHHHHHHHHHH--------CCTTCEEEEESSCCTTHHHHTT---TTTCCEEEEECCCT--TTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh--------CCCCCEEEEccCCchHHHHHHH---HhcCCeEEEeeccc--ccccccccccccchhhhh
Confidence 9999999999987 5899999999999998765542 23588998886531 222223 56665555433
Q ss_pred ccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc----cc-----------ccccCccE
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK----ID-----------VKEIGADF 246 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~-----------~~~~~~d~ 246 (452)
...+.++++|++++|+||||.+++ +++|+++|++|++ ++|+|++++..... .. ....+-.+
T Consensus 183 ~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~-~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi 261 (428)
T d1iaya_ 183 QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNI-HLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVH 261 (428)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC-EEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEE
T ss_pred hccCCCceEEEEccCCCcccccccccccchhheeeccCcE-EEEecccccccccCcccccccccccchhhccccccceEE
Confidence 333788999999999999999988 5678999999999 79999998743211 00 11112347
Q ss_pred EEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH---HHHHHhhcCHH
Q 012991 247 YVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV---TFVSRFEGGID 321 (452)
Q Consensus 247 ~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al---~~~~~~~~g~~ 321 (452)
++.|++|. ++.+| +|+++..++.+.. ...... ..+..+.....++.+.+ .+... -++
T Consensus 262 ~~~s~SK~-~~~~GlRiG~~~~~~~~l~~-~~~~~~-------------~~~~~~~~~~~~~~a~l~~~~~~~~---~~~ 323 (428)
T d1iaya_ 262 IVYSLSKD-MGLPGFRVGIIYSFNDDVVN-CARKMS-------------SFGLVSTQTQYFLAAMLSDEKFVDN---FLR 323 (428)
T ss_dssp EEEESTTT-SSCGGGCEEEEEESCHHHHH-HHHHHH-------------TTSCCCHHHHHHHHHHTTCHHHHHH---HHH
T ss_pred EEecCCCc-ccCCCcccccccccccchhh-hhhhhh-------------cccccccccccchhhhhhhhccccc---ccc
Confidence 88899996 55555 8888875544432 010000 00111112222222221 12222 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
..+++++++++.+.+.|... |+++..|++ +.++|+.++.........+..++++.|.+++||.+.++..+..
T Consensus 324 ~~~~~l~~r~~~~~~~L~~~-gi~~~~p~g--g~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~----- 395 (428)
T d1iaya_ 324 ESAMRLGKRHKHFTNGLEVV-GIKCLKNNA--GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC----- 395 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBCCCSS--SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC-----
T ss_pred ccccccchhHHHHHHHHHhC-CCEEecCCc--ceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCC-----
Confidence 56667777888888888764 888776665 7889998864333222334567888887778999988776632
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+|++. .++++++..+++|++++..
T Consensus 396 ---------~~~g~~Ris~a~-~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 396 ---------QEPGWFRVCFAN-MDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp ---------SSSSEEEEECSS-SCHHHHHHHHHHHHHHHHT
T ss_pred ---------CCCCEEEEEeCC-CCHHHHHHHHHHHHHHHhh
Confidence 346899999863 3677899999999998864
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.96 E-value=1.1e-27 Score=235.37 Aligned_cols=346 Identities=12% Similarity=0.077 Sum_probs=228.8
Q ss_pred CCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------------CCCCC
Q 012991 37 QHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------------ADDVG 99 (452)
Q Consensus 37 ~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~ 99 (452)
.+++|.|+.|.+. ..++.+.+++.+..... . ..+|....+..++|+++++++. + +++
T Consensus 29 ~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~----~-~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~-~~~ 102 (412)
T d1bw0a_ 29 PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQ----E-CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTI-VKD 102 (412)
T ss_dssp CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTT----C-SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGC-CGG
T ss_pred CCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCC----C-CCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCC-CCC
Confidence 3468999888653 34466777776654321 1 1234445556677777777652 3 368
Q ss_pred cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHH
Q 012991 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFK 178 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~ 178 (452)
+|++|+|+++|+..++.++ +++||+|++++|.|+.....+ +..|++++.+++.. +.+... .+.++
T Consensus 103 ~I~it~G~~~al~~~~~~l--------~~~Gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~--~~~~~~~~~~l~ 168 (412)
T d1bw0a_ 103 NVVLCSGGSHGILMAITAI--------CDAGDYALVPQPGFPHYETVC----KAYGIGMHFYNCRP--ENDWEADLDEIR 168 (412)
T ss_dssp GEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEEEEG--GGTTEECHHHHH
T ss_pred eEEEecccccchhhhhhhh--------hccccceeeeeccchhhhhhh----hccCcccccccccc--ccccchhhHHHH
Confidence 9999999999999999987 589999999999998865444 55699999997531 112223 78888
Q ss_pred HHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cc-------cccccCc
Q 012991 179 KGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KI-------DVKEIGA 244 (452)
Q Consensus 179 ~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~-------~~~~~~~ 244 (452)
+.+ ..+++++++++++||||.+++ +++|+++|+++++ ++|+|++++.-.. +. +......
T Consensus 169 ~~~------~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~-~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
T d1bw0a_ 169 RLK------DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRL-PLFSDEIYAGMVFKGKDPNATFTSVADFETTVP 241 (412)
T ss_dssp HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-CEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCC
T ss_pred hhh------hccccccccccccccccccchhhhccccccccccCCe-eeechhhHHHhccCCCCCccccccccccccccc
Confidence 877 688999999999999999987 5577888899999 6999999863211 11 1111122
Q ss_pred cEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHH-hhcCHH
Q 012991 245 DFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR-FEGGID 321 (452)
Q Consensus 245 d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-~~~g~~ 321 (452)
-+++.|++|. ++.+| +|++++.+..... ........ .... ....++... ...+...... ..+-+.
T Consensus 242 ~~~~~s~SK~-~~~~G~RvG~~~~~~~~~~~---~~~~~~~~----~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~ 309 (412)
T d1bw0a_ 242 RVILGGTAKN-LVVPGWRLGWLLYVDPHGNG---PSFLEGLK----RVGM-LVCGPCTVV---QAALGEALLNTPQEHLD 309 (412)
T ss_dssp EEEEEESTTT-TSCGGGCCEEEEEECTTCSC---HHHHHHHH----HHHH-HHTCSCHHH---HHHHHHHHHSSCHHHHH
T ss_pred cccccccCcc-CccCCCCcccccccchhhcc---hhhhhhhc----cccc-cccCCchhh---hhhcccccccccccccc
Confidence 3566789996 56556 8999888766543 00000000 0000 001111111 1112222221 001256
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
.+++++++.++.+.+.|.+.+|+.+..|.+ ++++|..++.... .+..+..++++.|.+++||.+.++..+
T Consensus 310 ~~~~~~~~~r~~~~~~l~~~~g~~~~~p~g--g~~l~~~~~~~~~-~~~~~~~~~~~~ll~~~gV~v~PG~~F------- 379 (412)
T d1bw0a_ 310 QIVAKIEESAMYLYNHIGECIGLAPTMPRG--AMYLMSRIDLEKY-RDIKTDVEFFEKLLEEENVQVLPGTIF------- 379 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEEECCCCB--TTEEEEEECGGGB-SSCCSHHHHHHHHHHHHCEECEEGGGG-------
T ss_pred cccchhHHHHHHHHHHHHHhcCceecCCCC--ceEEEEeCChhhc-CCCCCHHHHHHHHHHhCCEEEEecccc-------
Confidence 677778888888999998777887766665 7788877752211 112356788888877779999877765
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|||++. +.+++++.+++|+++++.
T Consensus 380 ---------g~~g~iRis~~~--~~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 380 ---------HAPGFTRLTTTR--PVEVYREAVERIKAFCQR 409 (412)
T ss_dssp ---------TCTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 235799999974 788899999999998865
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.96 E-value=1.1e-26 Score=223.70 Aligned_cols=340 Identities=12% Similarity=0.092 Sum_probs=245.2
Q ss_pred CCCeEEeccCCCC--CCcHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSFG--SCPKSVLADQQKWQLKFLQQPDD-FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
++.+++|..+.+- ...+.+.++..+.+..+...... ....+..+..+++++.+|+++|.+ ..++.++|..|+..
T Consensus 44 ~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e---~all~~sG~~An~~ 120 (396)
T d2bwna1 44 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKE---AALVFSSAYNANDA 120 (396)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHH
T ss_pred CeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCC---ceeeeecchHHHHH
Confidence 3567777655543 34456999998888876443222 223555678899999999999994 77888888889888
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.+++ ...+++.|+.+...|.|+..+. +..+.+++.+ ++++ .+++++.+++.. ..+.++
T Consensus 121 ~i~~l~------~~~~~d~i~~D~~~Hasi~~g~----~ls~a~~~~f----~Hnd----~~~l~~l~~~~~--~~~~~~ 180 (396)
T d2bwna1 121 TLSTLR------VLFPGLIIYSDSLNHASMIEGI----KRNAGPKRIF----RHND----VAHLRELIAADD--PAAPKL 180 (396)
T ss_dssp HHHHHH------HHSTTCEEEEETTCCHHHHHHH----HHSCCCEEEE----CTTC----HHHHHHHHHHSC--TTSCEE
T ss_pred HHHHHh------cccCCCceeehhhhhhccchhh----hccccCceEe----ecch----HHHhhhHHhhhc--ccCcee
Confidence 888774 2367899999999999987775 4467888888 5555 345555554321 356689
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc---------ccccCccEEEEcCcccCcCCCCcEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID---------VKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~---------~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
|++++..+++|.+.|+++|.++|++||+ .++||+||++|.+..+ . ...+|++++|++|. +|..| |++
T Consensus 181 iv~egvySmdGd~apl~~l~~L~~~y~~-~L~vDeAHs~Gv~G~~G~G~~~~~~~-~~~~di~~gTlsKa-~g~~G-g~v 256 (396)
T d2bwna1 181 IAFESVYSMDGDFGPIKEICDIAEEFGA-LTYIDEVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAKA-YGVFG-GYI 256 (396)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTTTTTSSTTSCCHHHHHTC-GGGCSEEEEESSST-TCSCC-EEE
T ss_pred EEEEeeccCcccccccHhHHHHhhhhcc-eeeeccceeeeeeccccccchhhcCC-ceeeeeeeeccccc-ccccc-ccc
Confidence 9999999999999999999999999999 7999999999886421 2 12479999999997 67776 888
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
+++++.++. + ..+ + ....+.+.++...+.++.++++.+... ..+..+++.+.+.+++++.|.++ |+
T Consensus 257 ~~~~~~i~~-l-~~~-----~----~~~ifStalpp~~~aa~~~al~i~~~~--~~~~~r~~l~~~~~~~~~~l~~~-g~ 322 (396)
T d2bwna1 257 AASARMVDA-V-RSY-----A----PGFIFSTSLPPAIAAGAQASIAFLKTA--EGQKLRDAQQMHAKVLKMRLKAL-GM 322 (396)
T ss_dssp EECHHHHHH-H-HHH-----C----HHHHTSBCCCHHHHHHHHHHHHHHTSH--HHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred chhHHHHHH-H-Hhh-----c----chhhhcccCcHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 888887775 2 111 0 111122344444445555566666532 34556777888999999999887 77
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+...+ ++++.+.+. +......+.+.|.+++||++.....|.. ......+|++++..+
T Consensus 323 ~~~~~~---spIvpv~ig------~~~~~~~~a~~lL~e~Gi~v~~i~~PtV-------------p~g~~rlRi~lsa~h 380 (396)
T d2bwna1 323 PIIDHG---SHIVPVVIG------DPVHTKAVSDMLLSDYGVYVQPINFPTV-------------PRGTERLRFTPSPVH 380 (396)
T ss_dssp CBCCCS---SSCEEEECC------CHHHHHHHHHHHHHHHCEECCEECTTTS-------------CTTCCEEEECCCTTS
T ss_pred CcCCCC---CCEEEEEeC------CHHHHHHHHHHHHHhCCEEEEEECCCcC-------------CCCCeeEEEEeCccC
Confidence 665432 567777664 3456677888766556999976655432 133467999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 012991 425 TLEDYEKFRDAVILL 439 (452)
Q Consensus 425 t~~di~~l~~~l~~~ 439 (452)
|.+||++++++|+++
T Consensus 381 t~edId~l~~~L~~i 395 (396)
T d2bwna1 381 DLKQIDGLVHAMDLL 395 (396)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999986
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.96 E-value=3e-27 Score=231.44 Aligned_cols=363 Identities=13% Similarity=0.099 Sum_probs=236.9
Q ss_pred HHHHHhhhcc-CCCCeEEeccCCCCC--Cc-HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-
Q 012991 26 EAEIRDEFSH-HQHGVARINNGSFGS--CP-KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD- 96 (452)
Q Consensus 26 ~~~ir~~~~~-~~~~~~~l~~~~~~~--~p-~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~- 96 (452)
.+.||+.+.. ..+++|.|+.|.+.+ .| +.+.+++.+.+... ......|+...+..++|+++++++ |.+
T Consensus 16 ~s~ire~~~~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~---~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~ 92 (403)
T d1wsta1 16 ASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEH---ADKALQYGTTKGFTPLRLALARWMEKRYDIPM 92 (403)
T ss_dssp CHHHHHHHHHHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHS---HHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCC
T ss_pred CcHHHHHHHHhCCCCcEECCCCCCCccccCHHHHHHHHHHHHHhC---cccccCCCCCcCCHHHHHHHHHHHHHHhCCCC
Confidence 4678876553 457899998876653 23 34555566655431 112234555666777788888775 322
Q ss_pred CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHH
Q 012991 97 DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINE 176 (452)
Q Consensus 97 ~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~ 176 (452)
++++|++|+|+++++..++.++ .++||+|++++|.|......+ ...|.++..++............+.
T Consensus 93 ~~~~I~it~G~~~al~~~~~~l--------~~~gd~v~~~~P~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~~~~~~ 160 (403)
T d1wsta1 93 SKVEIMTVAGSQQALDLIGRVF--------LNPGDPIVVEAPTYLAAIQAF----KYYDPEFISIPLDDKGMRVDLLEEK 160 (403)
T ss_dssp TTCEEEEESSHHHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEETTEECHHHHHHH
T ss_pred ChHHeeecccchHHHHHHHHHH--------hhcCCccccCCCcchhhhHHH----hhccccceeEeecccCCcccccccc
Confidence 3789999999999999999987 589999999999999875554 4569999988653222222222333
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc------cc-cccccCccE
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI------KI-DVKEIGADF 246 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~------~~-~~~~~~~d~ 246 (452)
.+....+. +..+.++++++++||||.+++. ++|+++|++|++ ++|+|+++..... ++ .....+..+
T Consensus 161 ~~~~~~~~---~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~-~li~De~y~~l~~~~~~~~~~~~~~~~~~~i 236 (403)
T d1wsta1 161 LEELRKQG---KRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDF-LIVEDGPYSELRYSGEPTPPIKHFDDYGRVI 236 (403)
T ss_dssp HHHHHHTT---CCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCSSCCCCCGGGGCSSSCEE
T ss_pred chhhhhcc---ccccccccccccCCCCCccCCHHHHHHHHHHHHhcCc-eeccccchhheecCCCCCCcccccCCCCcEE
Confidence 33333321 4667889999999999999985 478889999999 8999999863211 11 112234567
Q ss_pred EEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHH
Q 012991 247 YVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQR 326 (452)
Q Consensus 247 ~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~ 326 (452)
++.|++|++..+..+|+++.+++++.. + .... .......+...+.+..+.+..... ...++.+++.
T Consensus 237 ~~~S~SK~~~~G~RiG~~i~~~~~i~~-~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 302 (403)
T d1wsta1 237 YLGTFSKILAPGFRIGWVAAHPHLIRK-M-EIAK-----------QSIDLCTNTFGQAIAWKYVENGYL-DEHIPKIIEF 302 (403)
T ss_dssp EEEESTTTTCGGGCCEEEEECHHHHHH-H-HHHH-----------HHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHH
T ss_pred EEccccceecCcccccccccchHHHHH-H-HHHH-----------hhhccccccchhhhHHhhhhcccc-chhHHHHHHH
Confidence 888999975322338999998877764 1 1110 000112222222222222111110 1135667777
Q ss_pred HHHHHHHHHHHHHHHc--CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCC
Q 012991 327 NHEQALKMARMLANAW--GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG 404 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~ 404 (452)
+...++.+.+.|.+.. ++....|.+ +.++|+.+| ++.+...+++.|.++ ||.+.++..+...
T Consensus 303 ~~~~~~~~~~~L~~~~~~~~~~~~p~g--g~~~~~~~~------~~~~~~~~~~~l~~~-gV~v~pg~~f~~~------- 366 (403)
T d1wsta1 303 YKPRRDAMLEALEEYMPEGVEWTKPEG--GMFVRVTLP------EGIDTKLMMERAVAK-GVAYVPGEAFFVH------- 366 (403)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEECCCSB--SSEEEEECC------TTCCTTTTHHHHHHT-TEECEEGGGGSTT-------
T ss_pred HHHHHHHHHHHHHhhccCCeEEeCCCc--eeEEEEECC------CCCCHHHHHHHHHHC-CEEEEechhhcCC-------
Confidence 7788888888887763 344444544 788999998 455677788888764 9999776544221
Q ss_pred CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 405 ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 405 ~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
...++++||+++. .++++++..+++|++++++.
T Consensus 367 -----~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~~ 399 (403)
T d1wsta1 367 -----RDKKNTMRLNFTY-VPEETIREGVRRLAETIKEE 399 (403)
T ss_dssp -----CCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHHH
Confidence 2346899999864 47889999999999998754
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=9.1e-27 Score=225.39 Aligned_cols=338 Identities=10% Similarity=0.115 Sum_probs=244.5
Q ss_pred CCCCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGSF-G-SCPKSVLADQQKWQLKFLQQPDD-FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.++.+++|..+.+ | ...+.+.++..+.+..+...... ....+..+..+++++.||+++|. +..+++++|+.|+.
T Consensus 36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~---e~al~~~SG~~an~ 112 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY---SRALLFISGFAANQ 112 (383)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHH
T ss_pred CCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCC---CceEEecccchhhH
Confidence 4566778866543 2 23445999998888887443322 22345677889999999999998 47888999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceE
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
.++.++ ..+++.|+.+...|.+...+. +..+.+++.+ +.++ .+++++.+.+. .++..
T Consensus 113 ~~i~al--------~~~~d~v~~d~~~h~si~~g~----~~~~~~~~~~----~hnd----~~~le~~l~~~---~~~~~ 169 (383)
T d1bs0a_ 113 AVIAAM--------MAKEDRIAADRLSHASLLEAA----SLSPSQLRRF----AHND----VTHLARLLASP---CPGQQ 169 (383)
T ss_dssp HHHHHH--------CCTTCEEEEETTCCHHHHHHH----HTSSSEEEEE----CTTC----HHHHHHHHHSC---CSSCE
T ss_pred HHHHhh--------cCCCceEEeeccccHHHhhcc----ccCCCcceEe----cchH----HHHHHHHhccc---CCCce
Confidence 999988 488999999999999987665 4467888888 5555 57777777654 46678
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc------ccccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID------VKEIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~------~~~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
+|+++.+++++|.+.|+++|.++|++||+ +++||++|++|....+ ......|+++.+++|. +|..| |++..
T Consensus 170 ~vv~e~v~s~~G~i~pl~~l~~l~~~~~~-~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka-~g~~G-g~v~~ 246 (383)
T d1bs0a_ 170 MVVTEGVFSMDGDSAPLAEIQQVTQQHNG-WLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKG-FGVSG-AAVLC 246 (383)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHTTC-EEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSST-TSSCC-EEEEE
T ss_pred EEEecCCCCCCCcccchhHHHHHHHhcCc-EEEeecceeeeecCCcccchHHHcCCcccccccccccc-ccccc-ccccc
Confidence 99999999999999999999999999999 8999999999876432 2234578889999996 66665 78888
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
+.+.++. + .... ....+....+.....++.++++.+... ..+..+++..++..++.+.|.++ ++.+
T Consensus 247 ~~~~~~~-l-~~~~---------~~~~~s~~~~p~~~aa~~~a~~~~~~~--~~~~~~~~l~~~~~~~~~~l~~~-g~~~ 312 (383)
T d1bs0a_ 247 SSTVADY-L-LQFA---------RHLIYSTSMPPAQAQALRASLAVIRSD--EGDARREKLAALITRFRAGVQDL-PFTL 312 (383)
T ss_dssp CHHHHHH-H-HHHC---------HHHHSSBCCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHHHHTTS-SCEE
T ss_pred chhHHHH-H-Hhhc---------hhhhhcccccchHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHhc-CCcc
Confidence 7776664 1 1110 001111222333334555666666643 45677788889999999999876 5554
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
...+ ++++.+.+. +...+.++.+.|.++ ||++.....|.. ......+|++++..+|+
T Consensus 313 ~~~~---s~Ii~v~~g------~~~~a~~~~~~L~~~-Gi~v~~~~~PtV-------------p~g~~~lRi~~~a~ht~ 369 (383)
T d1bs0a_ 313 ADSC---SAIQPLIVG------DNSRALQLAEKLRQQ-GCWVTAIRPPTV-------------PAGTARLRLTLTAAHEM 369 (383)
T ss_dssp CSCC---SSBCCEEEE------SHHHHHHHHHHHHHT-TEECCEECTTSS-------------CTTCEEECCBCCTTCCH
T ss_pred CCCC---CCEEEEEEC------CHHHHHHHHHHHHHC-CceEEEEcCCCC-------------CCCCceEEEEeCCCCCH
Confidence 3332 345444443 345677899999875 999976554422 13346799999999999
Q ss_pred HHHHHHHHHHHHH
Q 012991 427 EDYEKFRDAVILL 439 (452)
Q Consensus 427 ~di~~l~~~l~~~ 439 (452)
+|||+++++|+.+
T Consensus 370 edid~l~~~L~~~ 382 (383)
T d1bs0a_ 370 QDIDRLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.95 E-value=1.3e-27 Score=236.01 Aligned_cols=354 Identities=13% Similarity=0.151 Sum_probs=230.1
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHH--hcCC----chhhhhhhhHHHHHHHHHHHhHhC------CC-CCCcEEEec
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKF--LQQP----DDFYFNSLRKGILESRAAVKDLIN------AD-DVGEISLVD 105 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~la~~~~------~~-~~~~i~~t~ 105 (452)
++|.|+.+.....-..+.+.+....... .... .....|....+..++|+++|++++ .+ ++++|++|+
T Consensus 37 G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~ 116 (431)
T d1m7ya_ 37 GIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTA 116 (431)
T ss_dssp SBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEE
T ss_pred cEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECC
Confidence 4889887766555443333333211000 0000 011224444456678888877653 22 378999999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKG 184 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~ 184 (452)
|+++++.+++.++ .++||+|++++|.|+.....+. ...|++++.+++. .++...+ .+.+++.+++.
T Consensus 117 G~~~al~~~~~~l--------~~pGd~Vlv~~P~y~~~~~~~~---~~~g~~~v~v~~~--~~~~~~l~~~~~~~~~~~~ 183 (431)
T d1m7ya_ 117 GATSANETFIFCL--------ADPGEAVLIPTPYYPGFDRDLK---WRTGVEIVPIHCT--SSNGFQITETALEEAYQEA 183 (431)
T ss_dssp HHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHTT---TTTCCEEEEEECC--GGGTSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh--------cCCCCEEEEeCCCchhHHHHHH---HhcCceecccccc--chhcccccHHHhhhhhhhh
Confidence 9999999999987 5899999999999988766553 2357888888652 1111223 67777766654
Q ss_pred ccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc----ccc-------------cccCc
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDV-------------KEIGA 244 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~-------------~~~~~ 244 (452)
...+.+++++++++|+||||..++ +++|+++|+++++ ++|+|++++..... .++ ...+-
T Consensus 184 ~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~-~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 262 (431)
T d1m7ya_ 184 EKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGI-HLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQR 262 (431)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGG
T ss_pred hhccCcceEEEecCccccccccccccccccccccccccCc-ceeecccccccccCCCCCCCHHHHhhhcccccccccCce
Confidence 444778999999999999999987 5678889999999 79999998642210 110 00112
Q ss_pred cEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH---HHHHHhhcC
Q 012991 245 DFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV---TFVSRFEGG 319 (452)
Q Consensus 245 d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al---~~~~~~~~g 319 (452)
.+++.|++|. +|.+| +|+++.+++++.. ..... . .....+.....++.+.+ .+..+ -
T Consensus 263 vi~~~s~SK~-~~~~G~RiG~~~~~~~~i~~-~~~~~-~------------~~~~~~~~~~~~~~a~l~~~~~~~~---~ 324 (431)
T d1m7ya_ 263 VHVVYSLSKD-LGLPGFRVGAIYSNDDMVVA-AATKM-S------------SFGLVSSQTQHLLSAMLSDKKLTKN---Y 324 (431)
T ss_dssp EEEEEESSSS-SCCGGGCEEEEEESCHHHHH-HHHHH-G------------GGSCCCHHHHHHHHHHHHCHHHHHH---H
T ss_pred EEEEecCccc-ccCCCCccceeccchhhhHH-HHHHH-h------------ccccccccccchhhhhhccchhhhh---h
Confidence 3778899996 66555 7998887766543 10000 0 00111122222222222 22222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 320 IDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
.+..++++++.++.+.+.|.+. |+++..|.+ +.++|+.++.........+..++++.|.+++||.+.++..+..
T Consensus 325 ~~~~~~~~~~~~~~l~~~L~~~-gi~~~~p~g--g~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~--- 398 (431)
T d1m7ya_ 325 IAENHKRLKQRQKKLVSGLQKS-GISCLNGNA--GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC--- 398 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TCEECCCCS--SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC---
T ss_pred hhhhhhhhhhhhhhhhhhhhcC-CcEEecCCc--eeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCC---
Confidence 5566777788888888888764 888776655 7889998875433333345667888887778999988766532
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|||++. .++++++..+++|++++++
T Consensus 399 -----------~~~~~~Ri~~a~-~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 399 -----------TEPGWFRVCFAN-LPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp -----------SSTTEEEEECSS-SCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCEEEEEeCc-CCHHHHHHHHHHHHHHHHH
Confidence 346899999863 3577899999999998875
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-26 Score=223.48 Aligned_cols=342 Identities=13% Similarity=0.053 Sum_probs=218.1
Q ss_pred EEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhh-hhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHHHHHHHHH
Q 012991 41 ARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYF-NSLRKGILESRAAVKDLINAD-DVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 41 ~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a~~~~~~~ 117 (452)
|-|..|.+. +.|+.+.+++.+.+.. +...|. ....++.+.+.+.+++.+|.+ ++++|++|+|+++++..++.+
T Consensus 2 ~~~~~~~~df~~p~~i~eal~~~~~~----~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~ 77 (361)
T d1d2fa_ 2 LPFTISDMDFATAPCIIEALNQRLMH----GVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ 77 (361)
T ss_dssp EECCSSSCSSCCCHHHHHHHHHHHTT----CCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred cCcCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhh
Confidence 345555555 6677799999887632 111121 111233344444444555654 468999999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +++||+|++++|.|.++...+ +..|.+++.++.... ++...+ .+.+++.+. .++++++++
T Consensus 78 l--------~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~~-~~~~~~d~~~~~~~~~-----~~~~~~i~l 139 (361)
T d1d2fa_ 78 W--------SETGEGVVIHTPAYDAFYKAI----EGNQRTVMPVALEKQ-ADGWFCDMGKLEAVLA-----KPECKIMLL 139 (361)
T ss_dssp S--------SCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEECEEC-SSSEECCHHHHHHHHT-----STTEEEEEE
T ss_pred c--------cccccccccccccccchhHHH----HhhcceEEeeccccc-ccccccccccchhhcc-----cCCceeEEe
Confidence 6 589999999999998875554 446888888865321 122223 788888885 578999999
Q ss_pred eccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccccccc--CccEEEEcCcccCcCCCC--cEEEE
Q 012991 197 DHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEI--GADFYVSNLHKWFFCPPS--VAFLY 265 (452)
Q Consensus 197 ~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~--~~d~~~~s~~K~l~g~~G--~G~l~ 265 (452)
++++||||..++ +++|+++|+++++ ++|+|++++.... +..+... +..+++.|++|. ++.+| +|+++
T Consensus 140 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~-~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~-~~~~g~R~g~~~ 217 (361)
T d1d2fa_ 140 CSPQNPTGKVWTCDELEIMADLCERHGV-RVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKS-FNIPALTGAYGI 217 (361)
T ss_dssp ESSCTTTCCCCCTTHHHHHHHHHHHTTC-EEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHH-HTCGGGCCEEEE
T ss_pred cccccccccccchhhhhhhhhhhhhhhe-eeeecccccccccccccccccccccccccccccccccc-cccccccceeee
Confidence 999999999987 6688999999999 7999999875321 1111111 234677789996 44444 68777
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH-cCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA-WGT 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-~~~ 344 (452)
+.............. .....++++...+.+...+...... -.+..+...+++++.+.+.+.+. +++
T Consensus 218 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~~~~~~ 284 (361)
T d1d2fa_ 218 IENSSSRDAYLSALK----------GRDGLSSPSVLALTAHIAAYQQGAP---WLDALRIYLKDNLTYIADKMNAAFPEL 284 (361)
T ss_dssp ECSHHHHHHHHHHHH----------TTSCCCSCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred cchhHHHHHHhhhcc----------cccccccchhhhHHHHHHHhhccch---hhhcccccchhhHHHHHHHhhhhcccc
Confidence 654322210000000 0000122222222222222222222 24555666666677777766554 355
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+..|++ +.++|+.++. .+.+..++++.|.+++||.+.++..+.. ...+++|+|+. .
T Consensus 285 ~~~~p~g--g~~~~~~l~~-----~~~~~~~~~~~Ll~~~gv~v~pG~~F~~--------------~~~~~vRis~~--~ 341 (361)
T d1d2fa_ 285 NWQIPQS--TYLAWLDLRP-----LNIDDNALQKALIEQEKVAIMPGYTYGE--------------EGRGFVRLNAG--C 341 (361)
T ss_dssp CCCCCSB--CSEEEEECGG-----GCCCHHHHHHHHHHTTCEECEEGGGGCG--------------GGTTEEEEECC--S
T ss_pred cccccCc--eeEEEEEccC-----CCCCHHHHHHHHHHhCCEEEEeccccCC--------------CCCCEEEEEEc--C
Confidence 6555554 6778887741 2457888999887778999987766532 33579999986 3
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++++++.++.|+++++.
T Consensus 342 ~~e~l~~al~rl~~~l~~ 359 (361)
T d1d2fa_ 342 PRSKLEKGVAGLINAIRA 359 (361)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 788899999999988864
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.95 E-value=5.5e-27 Score=225.61 Aligned_cols=337 Identities=11% Similarity=0.082 Sum_probs=221.8
Q ss_pred CCHHHHHhhhccCCCCeEEeccCC-CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGS-FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS 102 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~-~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~ 102 (452)
.++.+..+.+-...++++.|+.+. +-..|+.+++++.+....+..+|. ....++|+++|++++++ +++|+
T Consensus 8 g~~~~~~~~~g~~p~~~idls~~~np~~~p~~~~~a~~~~~~~~~~Yp~--------~~~~~Lr~aia~~~~v~-~~~I~ 78 (355)
T d1lc5a_ 8 GNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPD--------ADYFHLHQALARHHQVP-ASWIL 78 (355)
T ss_dssp CCCHHHHHHHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC--------TTCHHHHHHHHHHHTSC-GGGEE
T ss_pred CHHHHHHHHhCCChhheEEccCCCCCCCCCHHHHHHHHHHHHHhccCCC--------CChHHHHHHHHHHhCCC-HHHEE
Confidence 355555666654444688998763 234577788888876544432222 22367999999999997 78999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHh
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIE 182 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~ 182 (452)
+|+|+++++.+++.++ .++.+++..|.|....... ...+.+++.++++ .++...+.+.+++.+
T Consensus 79 ~~~g~~~~~~~~~~~~----------~~~~~~v~~p~~~~~~~~~----~~~~~~~~~v~~~--~~~~~~~~~~~~~~~- 141 (355)
T d1lc5a_ 79 AGNGETESIFTVASGL----------KPRRAMIVTPGFAEYGRAL----AQSGCEIRRWSLR--EADGWQLTDAILEAL- 141 (355)
T ss_dssp EESSHHHHHHHHHHHH----------CCSEEEEEESCCTHHHHHH----HHTTCEEEEEECC--GGGTTCCCTTHHHHC-
T ss_pred ecccHHHHHHHHHhhh----------ccccccccCCccceecccc----ccccccceeeeee--ccCCccceeeeeecc-
Confidence 9999999988877754 3445555667776543333 3358888888763 121122234455555
Q ss_pred ccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cc-cccccCccEEEEcCccc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KI-DVKEIGADFYVSNLHKW 254 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~-~~~~~~~d~~~~s~~K~ 254 (452)
.+++++|++++|+||||..++ +.+|+++|++|++ ++++|+++..... .. .....+-.+++.|++|+
T Consensus 142 -----~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 215 (355)
T d1lc5a_ 142 -----TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNI-NLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKF 215 (355)
T ss_dssp -----CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTT
T ss_pred -----ccccceeeeecccCcccccchhhhhhhhhhhcccccc-ccccccceeeeeeecccccccccccccceeecccccc
Confidence 688999999999999999998 4567888899999 7999999864221 11 11122345788899996
Q ss_pred CcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 255 l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
+|.+| +|+++++++.+.. ...... ...+.+.....+..++++... .....++++++..+
T Consensus 216 -~~l~GlR~G~~i~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~~~ 276 (355)
T d1lc5a_ 216 -YAIPGLRLGYLVNSDDAAMA-RMRRQQ-------------MPWSVNALAALAGEVALQDSA----WQQATWHWLREEGA 276 (355)
T ss_dssp -TTCTTTCCEEEECCCHHHHH-HHHHHS-------------CTTCSCHHHHHHHHHGGGCHH----HHHHHHHHHHHHHH
T ss_pred -cccccccccceeccchhhhH-HHHhhc-------------CCccccccccccccccccccc----hhHHHHHHHHHHHH
Confidence 66666 7998887665543 100000 001122222222222332211 24556677788888
Q ss_pred HHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 333 KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
++.+.|.+++++.+. |.. ++++|+.++. +..++++.|.++ ||.++++..+.. ..
T Consensus 277 ~~~~~l~~~~~~~~~-p~~--~~f~~~~~~~--------~~~~~~~~L~~~-gv~vr~~~~f~~--------------~~ 330 (355)
T d1lc5a_ 277 RFYQALCQLPLLTVY-PGR--ANYLLLRCER--------EDIDLQRRLLTQ-RILIRSCANYPG--------------LD 330 (355)
T ss_dssp HHHHHHHTSTTEEEC-CCS--SSEEEEEESC--------TTCCHHHHHHTT-TEECEECTTSTT--------------CC
T ss_pred HHHHHHhhcCCcEEC-CCC--CEEEEEECCC--------CHHHHHHHHHHC-CcEEEeCccCCC--------------CC
Confidence 899999888777654 333 6788888862 345688888765 999977654422 34
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
++++|||++ +++|+++++++|++++
T Consensus 331 ~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 331 SRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp TTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 689999987 7999999999999874
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=2.1e-26 Score=224.38 Aligned_cols=340 Identities=16% Similarity=0.101 Sum_probs=225.3
Q ss_pred cCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChh
Q 012991 35 HHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNAT 108 (452)
Q Consensus 35 ~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t 108 (452)
..+.+++.|+.|.+. +.|+.+.+++.+.... ...|....+..++|+++++++ |.+ ++++|++|+|++
T Consensus 25 ~~g~~vi~l~~G~p~~~~p~~~~~al~~~~~~-------~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~ 97 (389)
T d2gb3a1 25 KRGVRIHHLNIGQPDLKTPEVFFERIYENKPE-------VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGS 97 (389)
T ss_dssp HTTCEEEECSSCCCCSCCCTHHHHHHHHTCCS-------SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHH
T ss_pred HcCCCEEECCCCCCCCCCCHHHHHHHHhcCCC-------CCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccc
Confidence 367889999999887 5677788887653211 123444455677777777765 432 368999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH--HHHHHHHHhcccc
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI--INEFKKGIEKGKK 186 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~--~~~l~~~i~~~~~ 186 (452)
+++..++.++ ..+|+.|+++.|.|+....... ..|..+..++.. .++.. .+.+.+.+
T Consensus 98 ~~l~~~~~~l--------~~~gd~V~i~~P~y~~~~~~~~----~~g~~~~~~~~~----~~~~~~~~~~~~~~~----- 156 (389)
T d2gb3a1 98 EAILFSFAVI--------ANPGDEILVLEPFYANYNAFAK----IAGVKLIPVTRR----MEEGFAIPQNLESFI----- 156 (389)
T ss_dssp HHHHHHHHHH--------CCTTCEEEEEESCCTHHHHHHH----HHTCEEEEEECC----GGGTSCCCTTGGGGC-----
T ss_pred cccccccccc--------ccCCCeEEEeCCCCcccccccc----ccCccccccccc----cccccchhhhhhhhc-----
Confidence 9999999987 5899999999999988765544 458888888652 11111 33344434
Q ss_pred CCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc-----cccccCccEEEEcCcccCcCC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI-----DVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-----~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.++++++++++|+||||..++ +++|.++|+++++ ++|.|++++.-...- .....+..+++.|++|. ++.
T Consensus 157 -~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~-~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~-~~~ 233 (389)
T d2gb3a1 157 -NERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGL-FLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKK-FSA 233 (389)
T ss_dssp -CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTT-TTC
T ss_pred -ccCccEEEeCCCCccccccchHHHHHHHHhhcccCCE-EEEEecccccccccccccccccccccccccccccccc-ccC
Confidence 678999999999999999987 5678899999999 799999886432211 11111345677889896 565
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|+++++++.+.. . .... ......++...+.+...++....+ -++.++++.+++++.+.+
T Consensus 234 ~GlRiG~~~~~~~~i~~-~-~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~ 297 (389)
T d2gb3a1 234 CGARVGCLITRNEELIS-H-AMKL-----------AQGRLAPPLLEQIGSVGLLNLDDS---FFDFVRETYRERVETVLK 297 (389)
T ss_dssp GGGCCEEEECSCHHHHH-H-HHHH-----------HHHSCCCCHHHHHHHHHHHTCCHH---HHHHHHHHHHHHHHHHHH
T ss_pred cccceeeeeccchhHHH-H-Hhhh-----------hhccccccccccccccccccccch---hcccccccccccchhhhh
Confidence 66 7988886654433 0 0000 000112222222222222211111 356778888899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhh-----cceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR-----FGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
.|.++++.....|.. +.++|+.+| ..++.++++.|.++ .||.+.++..+.... +.
T Consensus 298 ~L~~~~~~~~~~p~~--g~~~~~~lp-------~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~-----------~~ 357 (389)
T d2gb3a1 298 KLEEHGLKRFTKPSG--AFYITAELP-------VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTP-----------GL 357 (389)
T ss_dssp HHHHTTCCCBCCCSB--SSEEEEECS-------SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSST-----------TT
T ss_pred hhhhhccccccCCCc--eEEEEEeCC-------CCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCC-----------CC
Confidence 999985445555554 789999987 33667788777654 366665544331110 23
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
..+++|||+. .+++++++.++.|++.++..
T Consensus 358 ~~~~iRis~~--~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 358 GKKEIRIACV--LEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp TSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEc--CCHHHHHHHHHHHHHHHHHh
Confidence 4679999986 47888999999998888753
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.6e-26 Score=224.45 Aligned_cols=358 Identities=14% Similarity=0.105 Sum_probs=239.5
Q ss_pred cccccCCCCCCCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHH
Q 012991 12 HHVSKKPKLTRCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVK 90 (452)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 90 (452)
.+..|+|... +.-+.++.+.- .++++|.|+.|.+. ++|+.+.+++.+.+.. .. .+|...++..++|++++
T Consensus 3 ~~~~~~~~~~-~~~~~~~~~~a--~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~----~~--~~Y~~~~G~~~LReaia 73 (382)
T d1u08a_ 3 IPQSKLPQLG-TTIFTQMSALA--QQHQAINLSQGFPDFDGPRYLQERLAHHVAQ----GA--NQYAPMTGVQALREAIA 73 (382)
T ss_dssp CCCCSCCCCC-CCHHHHHHHHH--HHTTCEECCCSSCSSCCCHHHHHHHHHHHHT----TC--CSCCCTTCCHHHHHHHH
T ss_pred CchhhCCCCC-CcHHHHHHHHh--ccCCCEEccCCCCCCCCCHHHHHHHHHHHhc----CC--CCCCCCcCCHHHHHHHH
Confidence 4566666442 33345555552 45688999999887 5678888888877643 11 23445555667777777
Q ss_pred hHh----CCC-CCC-cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCC
Q 012991 91 DLI----NAD-DVG-EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLP 164 (452)
Q Consensus 91 ~~~----~~~-~~~-~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~ 164 (452)
+++ |.+ +++ +|++|+|+++++.+++.++ .++||.|++++|.|+...... ...|..+..++.+
T Consensus 74 ~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~~ 141 (382)
T d1u08a_ 74 QKTERLYGYQPDADSDITVTAGATEALYAAITAL--------VRNGDEVICFDPSYDSYAPAI----ALSGGIVKRMALQ 141 (382)
T ss_dssp HHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECC
T ss_pred HHHHHHhCCCCCCCceEEeccchHHHHHHHHhhc--------ccccceEEEecccccchhhhh----hhccccceecccc
Confidence 764 543 234 6999999999999999987 589999999999999876554 3458777777542
Q ss_pred CCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCcc----
Q 012991 165 FPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSIK---- 236 (452)
Q Consensus 165 ~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~~---- 236 (452)
. ..... .+++++.+ .++++++++++|+||||.+++.+ +|.++|+++++ +++.|+.+......
T Consensus 142 ~---~~~~~d~~~l~~~~------~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~-~ii~d~~~~~~~~~~~~~ 211 (382)
T d1u08a_ 142 P---PHFRVDWQEFAALL------SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEI-FVISDEVYEHINFSQQGH 211 (382)
T ss_dssp T---TTCCCCHHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCC-EEEEECTTTTCBCCSSCC
T ss_pred c---ccccCCHHHHhhhh------ccCccEEEECCCCcccccccccccchhhhhhhccccc-eeeeecchhhcccccccc
Confidence 1 11222 78888877 67899999999999999999865 56677888899 79999876542211
Q ss_pred cccc----ccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 237 IDVK----EIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 237 ~~~~----~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
.... ..+..++..|++|. ++.+| +|+++++++++.. + .... .......+...+.++..++
T Consensus 212 ~~~~~~~~~~~~~i~~~s~SK~-~~~pG~RiG~~v~~~~~~~~-~-~~~~-----------~~~~~~~~~~~q~a~~~~l 277 (382)
T d1u08a_ 212 ASVLAHPQLRERAVAVSSFGKT-YHMTGWKVGYCVAPAPISAE-I-RKVH-----------QYLTFSVNTPAQLALADML 277 (382)
T ss_dssp CCGGGSHHHHTTEEEEEEHHHH-TTCGGGCCEEEECCHHHHHH-H-HHHH-----------HHHTSSCCHHHHHHHHHHH
T ss_pred ccccccccccCcEEEEeecccc-ccCCcccchhhhccchhHHH-H-Hhhh-----------ccccccccccccccccccc
Confidence 1110 11234788899996 55555 8999888877764 1 1110 0001223333333444444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI 390 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~ 390 (452)
+.-.+ ....++++++++++.+.+.+... ++.+..|.+ +.++|+.++.. ...+..++++.|.+++||.+.+
T Consensus 278 ~~~~~---~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p~g--g~~~~~~~~~~----~~~d~~e~~~~ll~e~gV~v~P 347 (382)
T d1u08a_ 278 RAEPE---HYLALPDFYRQKRDILVNALNES-RLEILPCEG--TYFLLVDYSAV----STLDDVEFCQWLTQEHGVAAIP 347 (382)
T ss_dssp HHCTH---HHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCB--SSEEEEECTTT----CCSCHHHHHHHHHHHSCEECEE
T ss_pred ccchH---HHHHHHHHHHhhhhhhhhhhccC-CcEEecCCc--eEEEEEecCCC----CCCCHHHHHHHHHHHCCEEEEc
Confidence 32222 35566777777777777776543 677766655 78899988731 1346778888887778999988
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 391 HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
+..+... ....+++|||+.. ++++++..+++|++
T Consensus 348 G~~F~~~------------~~~~~~~Ris~~~--~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 348 LSVFCAD------------PFPHKLIRLCFAK--KESTLLAAAERLRQ 381 (382)
T ss_dssp GGGGCSS------------CCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred chhhCCC------------CCCCCEEEEEEeC--CHHHHHHHHHHHhC
Confidence 7766332 1345799999963 78889998888875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=2.6e-26 Score=225.98 Aligned_cols=367 Identities=10% Similarity=0.022 Sum_probs=230.6
Q ss_pred CHHHHHhhhcc-CCCCeEEeccCCCCC--Cc-HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC
Q 012991 25 SEAEIRDEFSH-HQHGVARINNGSFGS--CP-KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD 96 (452)
Q Consensus 25 ~~~~ir~~~~~-~~~~~~~l~~~~~~~--~p-~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~ 96 (452)
..+.||+.+.. .++++|.|..|.+.+ .| ..+.+++.+.+... ......|...++..++|++|++++ |.+
T Consensus 24 ~~s~ir~~~~~~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~---~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~ 100 (420)
T d1vp4a_ 24 KSSIIREILKFAADKDAISFGGGVPDPETFPRKELAEIAKEIIEKE---YHYTLQYSTTEGDPVLKQQILKLLERMYGIT 100 (420)
T ss_dssp CCCCHHHHTTTTTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHS---HHHHTSCCCTTCCHHHHHHHHHHHHHHHCCC
T ss_pred CCcHHHHHHHHhCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhC---CccccCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 33456666553 567899999887653 24 44555555555431 111123445555666777777664 432
Q ss_pred --CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHH
Q 012991 97 --DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEII 174 (452)
Q Consensus 97 --~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 174 (452)
++++|++|+|+++|+.+++.++ +.+||+|++++|.|......+ +..|.+++.++.+ +.+..+
T Consensus 101 ~~~~~~I~it~G~~~al~~~~~~~--------~~~Gd~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~~----~~~~~~ 164 (420)
T d1vp4a_ 101 GLDEDNLIFTVGSQQALDLIGKLF--------LDDESYCVLDDPAYLGAINAF----RQYLANFVVVPLE----DDGMDL 164 (420)
T ss_dssp SCCGGGEEEEEHHHHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTTCEEEEEEEE----TTEECH
T ss_pred CCCHHHeEeccchhhhHHHHHHhh--------hccccccccccccccchhHHH----HHHhhhccccccc----cccccc
Confidence 4789999999999999999987 589999999999999865554 4569999998653 221112
Q ss_pred HHHHHHHh---ccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc-------ccccc
Q 012991 175 NEFKKGIE---KGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK-------IDVKE 241 (452)
Q Consensus 175 ~~l~~~i~---~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~-------~~~~~ 241 (452)
+.++..+. ........+.++++++++||||.+++ +++|+++|+++++ ++|+|++++..... .....
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i-~ii~De~y~~l~~~~~~~~~~~~~~~ 243 (420)
T d1vp4a_ 165 NVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDL-FIVEDDPYGALRYEGETVDPIFKIGG 243 (420)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECSSTTCBCSSCCCCCHHHHHC
T ss_pred chhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccc-cccccchhhhccccCccccccccccc
Confidence 33322221 11111234567788999999999987 4678999999999 79999998642211 11112
Q ss_pred cCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH--HHHhhcC
Q 012991 242 IGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF--VSRFEGG 319 (452)
Q Consensus 242 ~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~~~~~~g 319 (452)
.+..++..|++|++..+..+|+++.++++++. + .... ..+....+...+.+....++. ..+ .
T Consensus 244 ~~~~i~~~s~sk~~~~G~RiG~~~~~~~~i~~-l-~~~~-----------~~~~~~~~~~~q~~~a~~l~~~~~~~---~ 307 (420)
T d1vp4a_ 244 PERVVLLNTFSKVLAPGLRIGMVAGSKEFIRK-I-VQAK-----------QSADLCSPAITHRLAARYLERYDLLE---Q 307 (420)
T ss_dssp TTTEEEEEESTTTTCGGGCEEEEECCHHHHHH-H-HHHH-----------HHHHSSCCHHHHHHHHHHHHHSCHHH---H
T ss_pred ccceeEEeccccccccccccccccccchhhhh-h-hhhh-----------hhccccCchhhhhhhhhhcccccccc---c
Confidence 23446777888864322238999888887765 1 1110 000111222222222212211 011 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCC
Q 012991 320 IDGIMQRNHEQALKMARMLANA----WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAP 395 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~ 395 (452)
++..++.+++.++.+.+.|.+. +|+++..|.+ +.++|+.++ ++.++.++.+.|.+ .||.+.++..+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~g--g~f~~~~~~------~~~d~~~~~~~l~~-~gV~v~PG~~F~ 378 (420)
T d1vp4a_ 308 LKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEG--GLFIWLTLP------EGFDTWEMFEYAKR-KKVFYVPGRVFK 378 (420)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSB--SSEEEEECC------TTCCTTTTHHHHHH-HTEECEEGGGGC
T ss_pred chhHHHHhhhhcccchhhhhhhhccCCCcEEecCCc--eEEEEEECC------CCCCHHHHHHHHHH-CCeEEEechhhC
Confidence 3445556666666777777654 4666666655 788999987 35566678888866 599998776653
Q ss_pred CCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcccccccc
Q 012991 396 KDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQVCQML 449 (452)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~~~~~~ 449 (452)
.. ....+++|||++. .+.+++++.+++|++++++..+.+.|
T Consensus 379 ~~------------~~~~~~iRls~~~-~~~e~l~~a~~rL~~~l~~~~~~~~l 419 (420)
T d1vp4a_ 379 VY------------DEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYGKEKHL 419 (420)
T ss_dssp TT------------CCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CC------------CCCCCEEEEEeCc-CCHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 32 1346799999864 47888999999999999877665544
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.95 E-value=1.3e-25 Score=220.74 Aligned_cols=354 Identities=14% Similarity=0.088 Sum_probs=234.2
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-C-CCcEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-D-VGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~-~~~i~~t~g~t~a 110 (452)
.++|.|..|.+. +.|+.+.+++.+.+... ......|....+..++|++||+++ |.+ + .++|++|+|+++|
T Consensus 26 ~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~---~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~a 102 (418)
T d2r5ea1 26 YKPLNLGQGFPDYHAPKYALNALAAAANSP---DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 102 (418)
T ss_dssp HCCEECSSSCCSSCCCHHHHHHHHHHHTCS---CGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCCEEccCCCCCCCCCHHHHHHHHHHHhCC---CccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchh
Confidence 357899988876 55788999888875321 112223555555666777776664 543 2 3789999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC----ChH--HH-HHHHHHHHhc
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA----SEE--EI-INEFKKGIEK 183 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~----~~~--~~-~~~l~~~i~~ 183 (452)
+.+++.++ +++||.|++++|.|+.....+ ...|.+++.+++..... .+. .. .+++.+..
T Consensus 103 l~~~~~~l--------~~~gd~vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (418)
T d2r5ea1 103 LYATIQGH--------VDEGDEVIIIEPFFDCYEPMV----KAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF-- 168 (418)
T ss_dssp HHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHC--
T ss_pred hhhhhhhc--------cccccceeccccccchhhHHH----HHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhh--
Confidence 99999987 589999999999999875554 44699999887631110 011 12 66777666
Q ss_pred cccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCcc----c---ccc-ccCccEEEEcCc
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSIK----I---DVK-EIGADFYVSNLH 252 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~~----~---~~~-~~~~d~~~~s~~ 252 (452)
..+++++++++++||||.+++.+ +|+++|++|++ ++|.|++++..... . .+. .....+++.|++
T Consensus 169 ----~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~-~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~S 243 (418)
T d2r5ea1 169 ----NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNV-LCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAG 243 (418)
T ss_dssp ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHH
T ss_pred ----hccccceecCCcCccccccccHHHHHHHhhhhhcCCe-eeecccchhhhccCCCccccccccccccceeeeeecCC
Confidence 68899999999999999999854 67888999999 79999998653321 1 111 112346778999
Q ss_pred ccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHH----hhcCHHHHHHH
Q 012991 253 KWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR----FEGGIDGIMQR 326 (452)
Q Consensus 253 K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~----~~~g~~~~~~~ 326 (452)
|. ++.+| +|++++++++++. + .... .......+...+.++...+..... .+.-++.++++
T Consensus 244 K~-~~~pGlRiG~~~~~~~~i~~-~-~~~~-----------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 309 (418)
T d2r5ea1 244 KT-FSLTGWKIGWAYGPEALLKN-L-QMVH-----------QNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGE 309 (418)
T ss_dssp HH-TTCGGGCCEEEESCHHHHHH-H-HHHH-----------TTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHH
T ss_pred cc-ccCCCcccccccccchhhhh-h-hhcc-----------cccccccccchhhhccccccccccccccchhhHHHHHHH
Confidence 97 65555 8999988877764 1 1100 000011111122222222211110 01125677888
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQ 400 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~ 400 (452)
++.+++.+.+.|.++ |+.+..|++ +.++|+.++.... ..+..+..++++.|.+++||.+.++..+...+.
T Consensus 310 ~~~~r~~l~~~L~~~-g~~~~~P~g--g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~- 385 (418)
T d2r5ea1 310 LMAKRDYMASFLAEV-GMNPTVPQG--GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN- 385 (418)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEECSB--SSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGG-
T ss_pred HHHhhhhHHhhHhhc-CCcccCCCc--eeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCC-
Confidence 888999999999987 887766665 7888887753110 112346678888888778999977655522100
Q ss_pred CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 401 PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 401 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.....+++|||+.. +++++++.+++|++++.
T Consensus 386 --------~~~g~~~iRis~~~--~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 386 --------KHLGEDFVRYCFFK--KDENLQKAAEILRKWKG 416 (418)
T ss_dssp --------HHHHTTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred --------ccCCCCEEEEEecC--CHHHHHHHHHHHHHHHc
Confidence 00124799999964 78999999999999874
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.94 E-value=8.4e-27 Score=224.66 Aligned_cols=348 Identities=11% Similarity=0.036 Sum_probs=223.3
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCc-----hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPD-----DFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
||.-++++.+.|++|+++|.+.+..+...+. ++.+..+.+.++++|+.+++++++++...|++++|+++++..++
T Consensus 4 ~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~ 83 (360)
T d1w23a_ 4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTML 83 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred eeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 4544456788889999999987644322211 13345678899999999999999985557888899888877666
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
... ...+++.|++....+.+. .+...+...+.........+. .. ...+.++... +.+.
T Consensus 84 ~~~-------~~~~~~~v~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~----------~~~~ 141 (360)
T d1w23a_ 84 PMN-------LLTKGTIGNYVLTGSWSE--KALKEAKLLGETHIAASTKAN--SY-QSIPDFSEFQ----------LNEN 141 (360)
T ss_dssp HHH-------HCCTTCEEEEEECSHHHH--HHHHHHHTTSEEEEEEECGGG--TS-CSCCCGGGCC----------CCTT
T ss_pred Hhh-------hcccCcccceeeccchhh--hhHHHHHHhhhcceeeccccc--cc-cchhhhhhcc----------cccc
Confidence 655 256777887776555443 333335777777766643211 10 0022222222 2222
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
+.+.+|.||...|+++|.++|+++|+ ++++|+++++|+.++|++.+++|+++++.+|+ +|+|.|+++.++.....
T Consensus 142 ~~~~~~~tg~~~~~~~i~~~~~~~g~-l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~--~~~~~~~~~~~~~~~~~-- 216 (360)
T d1w23a_ 142 DAYLHITSNNTIYGTQYQNFPEINHA-PLIADMSSDILSRPLKVNQFGMIYAGAQKNLG--PSGVTVVIVKKDLLNTK-- 216 (360)
T ss_dssp EEEEEEESEETTTTEECSSCCCCCSS-CEEEECTTTTTSSCCCGGGCSEEEEETTTTTS--CTTCEEEEEEHHHHCSC--
T ss_pred cceeEecCCccccceeeeecccccee-eEEeeccccccccccccccccceEEeeccccc--cCCcceeeEechhhhcc--
Confidence 44566778999999999999999999 89999999999999999999999998888884 34445666666555443
Q ss_pred CCCceeccCCC-CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCccc-
Q 012991 276 HHPVVSHEFGN-GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPPEI- 352 (452)
Q Consensus 276 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~- 352 (452)
.+........ .......+..++......+...++.+.... ++.....++................... +...+..
T Consensus 217 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 294 (360)
T d1w23a_ 217 -VEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDL-GGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSR 294 (360)
T ss_dssp -CTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGB
T ss_pred -cccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhc
Confidence 1111000000 000111223344444444444445544442 2344445444555555555444433332 2223333
Q ss_pred ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHH
Q 012991 353 CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l 432 (452)
...+++|.++ ++....++...|.+ +||.+..++.+. +.+|+|+..++|.|||++|
T Consensus 295 S~~vvsf~i~------~~~~~~~~~~~l~~-~GI~~~~G~~~~------------------ggiRiS~~~~~t~e~V~~L 349 (360)
T d1w23a_ 295 SLMNVTFNLR------NEELNQQFLAKAKE-QGFVGLNGHRSV------------------GGCRASIYNAVPIDACIAL 349 (360)
T ss_dssp CSSEEEEECS------SHHHHHHHHHHHHH-TTEESCBCCTTT------------------CSEEEECCTTSCHHHHHHH
T ss_pred ceeEEEEEcC------CCccHHHHHHHHHH-CCCeeeeCCCcc------------------CcEEEEeeCCCCHHHHHHH
Confidence 3457889887 46677788888876 599987776542 3599999888899999999
Q ss_pred HHHHHHHHhc
Q 012991 433 RDAVILLVEE 442 (452)
Q Consensus 433 ~~~l~~~~~~ 442 (452)
+++|+++.+.
T Consensus 350 i~~~~~~~~~ 359 (360)
T d1w23a_ 350 RELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998864
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=9.2e-27 Score=224.06 Aligned_cols=349 Identities=11% Similarity=-0.043 Sum_probs=228.5
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCc-----hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPD-----DFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
+.+|+. ++...|++|+++|.+.+.++...+. ++.+..+.++++++|+.|++++++++...|+|++|++++.+.+
T Consensus 2 ~~nF~p-GP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a 80 (360)
T d1bjna_ 2 IFNFSS-GPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA 80 (360)
T ss_dssp CEECCS-SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred eEEeCC-CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhh
Confidence 456654 5677788899999998765433322 2345667889999999999999998556889998888777766
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+... ...+++.+++....+ ....|..++++.|..+...... ....+ .+.+++.+ ..++++
T Consensus 81 ~~~~-------~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~~~~ 141 (360)
T d1bjna_ 81 VPLN-------ILGDKTTADYVDAGY--WAASAIKEAKKYCTPNVFDAKV----TVDGLRAVKPMREW------QLSDNA 141 (360)
T ss_dssp HHHH-------HCTTCCEEEEEESSH--HHHHHHHHHTTTSEEEEEECEE----EETTEEEECCGGGC------CCCSSC
T ss_pred hhhc-------ccccccccceecccc--hhhhhHHHHhhcCccceeeccc----cCCCcchhhhhhhh------ccCCce
Confidence 6544 245666776665444 3456666677788777666432 11111 33333334 577888
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCcccc
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSS 273 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~ 273 (452)
+++.+.+|.||...+++.+. ++.+++ ++++|++++.+..+++.. ++|++++|++|++++|+|.++++.++.....
T Consensus 142 v~v~~~~~~t~~~~~~~~i~--~~~~~~-~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~ 216 (360)
T d1bjna_ 142 AYMHYCPNETIDGIAIDETP--DFGADV-VVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLGKA 216 (360)
T ss_dssp SCEEECSEETTTTEECCCCC--CCCTTC-CEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCSCC
T ss_pred eEEEecccccccCcccccee--cccccc-eeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhhhc
Confidence 88888899999998887763 567789 799999999998888876 4688999999998888888888887766654
Q ss_pred CCCCCceeccCCCCcccccccccccCcccccc-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-c
Q 012991 274 DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLV-IPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-E 351 (452)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~ 351 (452)
.....................++....... ...+..... +++.+...++..+....+.+.+...........+ .
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (360)
T d1bjna_ 217 --NIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKA--NGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRN 292 (360)
T ss_dssp --CTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGG
T ss_pred --cccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHhhhccccccccCCccc
Confidence 111100000000000001112222222222 222233333 2355666666666666666666554333333322 3
Q ss_pred cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHH
Q 012991 352 ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 431 (452)
....+++|.+| ++.+.+.+.+.|.+ .||.+..++.+. +.+|+|+..++|.|||++
T Consensus 293 rs~~v~~f~~~------~~~~~~~~~~~l~~-~Gi~~~~G~~~~------------------g~~Ris~~~~~t~edV~~ 347 (360)
T d1bjna_ 293 RSRMNVPFQLA------DSALDKLFLEESFA-AGLHALKGHRVV------------------GGMRASIYNAMPLEGVKA 347 (360)
T ss_dssp BCSSEEEEEES------SGGGHHHHHHHHHH-TTEECCBCCTTT------------------CSEEEECCTTSCHHHHHH
T ss_pred ccceEEEEEcC------CcccHHHHHHHHHH-CCCEeecCCCcc------------------CeEEEEecCCCCHHHHHH
Confidence 34567889998 56788889999976 599987665431 359999999999999999
Q ss_pred HHHHHHHHHhc
Q 012991 432 FRDAVILLVEE 442 (452)
Q Consensus 432 l~~~l~~~~~~ 442 (452)
|+++|+++.+.
T Consensus 348 li~~l~e~~~~ 358 (360)
T d1bjna_ 348 LTDFMVEFERR 358 (360)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998753
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.94 E-value=2.2e-26 Score=221.85 Aligned_cols=346 Identities=10% Similarity=0.025 Sum_probs=221.4
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCc-----hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPD-----DFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
.+|+ +++...|++|+++|.+.+..+.+.+. ++.+..+.+.++++|+.|++++++++...++|++|++++...++
T Consensus 5 ~~F~-pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~ 83 (361)
T d2c0ra1 5 YNFN-AGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMI 83 (361)
T ss_dssp EECC-SSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHH
T ss_pred cccC-CCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHH
Confidence 3465 45777888899999987654322221 13356778899999999999999975558888887766554444
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
... ...+++++++.. +.++...|..++.+.|..+..+..++. ... .+.+++.++ ..+ .
T Consensus 84 ~~~-------l~~~~~~~l~~~--~g~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~------~~~-~- 142 (361)
T d2c0ra1 84 PMN-------FLKEGQTANYVM--TGSWASKALKEAKLIGDTHVAASSEAS----NYMTLPKLQEIQL------QDN-A- 142 (361)
T ss_dssp HHH-------HCCTTCEEEEEE--CSHHHHHHHHHHHHHSCEEEEEECGGG----TTCSCCCGGGCCC------CTT-E-
T ss_pred Hhc-------cccCCCceEEEe--echhhhhhhhhhhhcCceeeeeccccc----cccchhhhhhhcc------cCc-c-
Confidence 333 246778777654 344556777778999999998865321 112 444554442 222 2
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccC
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSD 274 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~ 274 (452)
.+.+|.||...|+.+|.++|+++|+ ++++|+++++|..++|+..++ +.+++++|.++.++|.++++..+.....
T Consensus 143 --~~v~~~tg~~~~~~~i~~~~~~~~a-l~~vDavss~g~~~id~~~~d--i~~~s~~k~~~~~~~~~~~~~~~~~~~~- 216 (361)
T d2c0ra1 143 --AYLHLTSNETIEGAQFKAFPDTGSV-PLIGDMSSDILSRPFDLNQFG--LVYAGAQKNLGPSGVTVVIVREDLVAES- 216 (361)
T ss_dssp --EEEEEESEETTTTEECSSCCCCTTS-CEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCSSCEEEEEEGGGSSSC-
T ss_pred --eEEEEecccceecceEEEeeccCCc-eEEEEeeccccccccccccce--eEEEecccccccccCcEEEEEhHHhhhC-
Confidence 3345678999999999999999999 899999999999999999775 4556678864444444444444433332
Q ss_pred CCCCceeccCCC-CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCccc
Q 012991 275 MHHPVVSHEFGN-GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPPEI 352 (452)
Q Consensus 275 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 352 (452)
.+........ ..........++.......+..+..+... .++.....++.+..+..+.......... .....++.
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (361)
T d2c0ra1 217 --PKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEE-RGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDS 293 (361)
T ss_dssp --CTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGG
T ss_pred --ccccccccccccccccccccccccceeeehhhhHHHhhhh-ccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhh
Confidence 1111000000 00000111223333333333434444443 2355566666666666666666554333 22333333
Q ss_pred c-cceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHH
Q 012991 353 C-AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 353 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 431 (452)
+ ..+++|.++ ++.++.++.+.|.+ +||.+..++.+. +.+|||+..++|.|||++
T Consensus 294 rS~~~~~~~~~------~~~~~~~~~~~L~~-~GI~~~~G~~~~------------------g~~RIs~~~~~~~edv~~ 348 (361)
T d2c0ra1 294 RSDMNITFRLA------SEELEKEFVKASEQ-EGFVGLKGHRSV------------------GGLRASIYNAVPYESCEA 348 (361)
T ss_dssp BCSSEEEEECS------CHHHHHHHHHHHHH-TTEESCBCCTTT------------------CSEEEECCTTSCHHHHHH
T ss_pred ccceEEEEECC------CcccHHHHHHHHHH-CCCEEecCCCcC------------------CeEEEEecCCCCHHHHHH
Confidence 3 456788887 57788899999976 599998776541 249999999999999999
Q ss_pred HHHHHHHHHhc
Q 012991 432 FRDAVILLVEE 442 (452)
Q Consensus 432 l~~~l~~~~~~ 442 (452)
|+++|+++.++
T Consensus 349 Lv~~l~~~~~~ 359 (361)
T d2c0ra1 349 LVQFMEHFKRS 359 (361)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999997753
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=3.6e-25 Score=212.68 Aligned_cols=284 Identities=10% Similarity=0.059 Sum_probs=192.6
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC-EEEEeCCcchhHHHHHHHHHHhcCcEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND-TVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~-~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 160 (452)
..++++++|+++|++ +++|++|+|+++++.+++.++ ..+|| .|+++.|.|......+ +..|.+++.
T Consensus 58 ~~~Lr~~ia~~~gv~-pe~I~it~Gs~eai~~~~~~~--------~~pgd~~Vl~~~P~y~~~~~~~----~~~g~~v~~ 124 (354)
T d1fg7a_ 58 PKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIRAF--------CEPGKDAILYCPPTYGMYSVSA----ETIGVECRT 124 (354)
T ss_dssp CHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHHHH--------CCTTTCEEEECSSSCTHHHHHH----HHHTCEEEE
T ss_pred HHHHHHHHHHHhCCC-hHHeeeccCchHHHHHHHHHh--------hccccccccccccccccchhhh----hccCceeec
Confidence 368999999999996 899999999999999999987 58887 6888999998865554 445999988
Q ss_pred EeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHH--HHcCCCEEEEecccccCCc--
Q 012991 161 VQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKIC--RDEGVDQVFVDAAHAMGSI-- 235 (452)
Q Consensus 161 ~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~--~~~~~~~~ivD~a~~~g~~-- 235 (452)
++. +++..+ .+.+++.+ .++++|++++++||||.+++.+++..++ .+++. ++++|+++.....
T Consensus 125 ~~~----~~~~~~d~~~l~~~~-------~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~-~~iidd~~~~f~~~~ 192 (354)
T d1fg7a_ 125 VPT----LDNWQLDLQGISDKL-------DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA-IVVADEAYIEFCPQA 192 (354)
T ss_dssp CCC----CTTSCCCHHHHHTSC-------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTC-EEEEECTTGGGSGGG
T ss_pred ccc----ccccccchhhhhhcc-------cccceeeccCCCccceeEeeecccccccccccccc-cccccccchhhcccc
Confidence 743 333334 67776654 5799999999999999999866544333 33567 6888887653221
Q ss_pred --cccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 236 --KIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 236 --~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
+.........+++.|++|+ +|.+| +|+++.+++++.. + ..... ....+...+..+.+++.
T Consensus 193 ~~~~~~~~~~~~iv~~S~SK~-~~laGlRiGy~i~~~~~i~~-l-~~~~~-------------~~~~~~~~~~~a~~~~~ 256 (354)
T d1fg7a_ 193 SLAGWLAEYPHLAILRTLSKA-FALAGLRCGFTLANEEVINL-L-MKVIA-------------PYPLSTPVADIAAQALS 256 (354)
T ss_dssp CSGGGTTTCTTEEEEEESSST-TCCGGGCCEEEEECHHHHHH-H-HHHSC-------------SSCSCHHHHHHHHHHTS
T ss_pred ccchhhcccccceEEeCCccc-cCCCccccccccccchhhhh-h-hhhcC-------------ccchhhHHHHHHHHHHh
Confidence 1112222345677899996 67666 8999998888765 2 11100 01111111111111111
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
..... ......+++.+.++++.+.+.+++++....|.+ ++|+|+.++ ++.++.+.|.++ ||.++.+
T Consensus 257 ~~~~~--~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~--~~f~~~~~~---------~~~~~~~~L~~~-gIlvr~~ 322 (354)
T d1fg7a_ 257 PQGIV--AMRERVAQIIAEREYLIAALKEIPCVEQVFDSE--TNYILARFK---------ASSAVFKSLWDQ-GIILRDQ 322 (354)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCS--SSEEEEEET---------THHHHHHHHHHT-TEECEEC
T ss_pred hhccc--cccccchhhhhHHHHHHHHHHhCCCcceeCCCC--ceEEEEeCC---------CHHHHHHHHHHC-CcEEecC
Confidence 11100 133344556777888888898886654444444 678998885 456788999775 9999765
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
..+. ..++++|||++ |.+|+++++++||.
T Consensus 323 ~~~~---------------~~~~~lRisig---t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 323 NKQP---------------SLSGCLRITVG---TREESQRVIDALRA 351 (354)
T ss_dssp TTST---------------TCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred CCCC---------------CCCCEEEEEeC---CHHHHHHHHHHHhh
Confidence 4431 33579999997 89999999999973
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.3e-25 Score=216.25 Aligned_cols=365 Identities=12% Similarity=0.075 Sum_probs=236.8
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-C
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-D 97 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~ 97 (452)
..+.+..+.- .++++|.|..|.+. +.|+.+.+++.+.+. ++.....|....+..++|+++++++ |.+ +
T Consensus 13 ~~~~~~~~~~--~~~dvI~l~~G~p~~~~p~~v~~a~~~al~----~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~ 86 (418)
T d1w7la_ 13 NPWVEFVKLA--SEHDVVNLGQGFPDFPPPDFAVEAFQHAVS----GDFMLNQYTKTFGYPPLTKILASFFGELLGQEID 86 (418)
T ss_dssp CTHHHHHHHH--HTSCCEECCCCSCSSCCCHHHHHHHHHHTS----SCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHh--CCCCCEECCCCCCCCCCCHHHHHHHHHHHh----CCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCC
Confidence 3355555543 35789999999876 567888888887653 2222223444555666777666665 654 1
Q ss_pred -CCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC--------C
Q 012991 98 -VGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL--------A 168 (452)
Q Consensus 98 -~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~--------~ 168 (452)
.++|++|+|+++|+.+++.++ +.+|+.|++++|.|+.+...+ ...|.+++.++..... +
T Consensus 87 ~~~~I~it~G~~~al~~~~~~l--------~~~g~~vlv~~p~~~~y~~~~----~~~g~~~v~~~~~~~~~~~~~~~~~ 154 (418)
T d1w7la_ 87 PLRNVLVTVGGYGALFTAFQAL--------VDEGDEVIIIEPFFDCYEPMT----MMAGGRPVFVSLKPGPIQNGELGSS 154 (418)
T ss_dssp HHHHEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEECC---CCSEEG
T ss_pred cccceeeccCcHHHHHHHHHhh--------ccCCceeeccccccchhHHHH----HHcCCEeeccccccccccccccccc
Confidence 257999999999999999987 589999999999999865544 4468888877642110 0
Q ss_pred ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cc---
Q 012991 169 SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KI--- 237 (452)
Q Consensus 169 ~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~--- 237 (452)
++..+ .+++.... .++++++++++++||||.+++ +++|+++|+++++ ++|.|+++..-.. ..
T Consensus 155 ~~~~~d~~~~~~~~------~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v-~vI~De~Y~~l~~~~~~~~~~~ 227 (418)
T d1w7la_ 155 SNWQLDPMELAGKF------TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDV-VCITDEVYQWMVYDGHQHISIA 227 (418)
T ss_dssp GGEECCHHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGG
T ss_pred cCcccchhhhhccc------cccccceeccCcCCcccccccHHHHHHHHHHHHhcCC-CchhhhhhHHhhcCCCCCCCHH
Confidence 11112 44444444 678999999999999999987 5578888999999 7999999754221 11
Q ss_pred ccccc-CccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH
Q 012991 238 DVKEI-GADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314 (452)
Q Consensus 238 ~~~~~-~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 314 (452)
.+... +-.+++.|++|. ++.+| +|++++.++++.. + .... .......+...+.++..++....
T Consensus 228 ~~~~~~~~~i~~~S~SK~-~~~pG~RvG~~v~~~~~~~~-l-~~~~-----------~~~~~~~~~~~q~~~~~~l~~~~ 293 (418)
T d1w7la_ 228 SLPGMWERTLTIGSAGKT-FSATGWKVGWVLGPDHIMKH-L-RTVH-----------QNSVFHCPTQSQAAVAESFEREQ 293 (418)
T ss_dssp GSTTTGGGEEEEEEHHHH-TTCGGGCCEEEECCHHHHHH-H-HHHH-----------HTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HccccccccceecccCcc-ccCCCCcccccccchhhhhh-h-cccc-----------ccccccccchhhHHHHHHhhhcc
Confidence 22221 235788899996 55555 8999888876654 1 1110 00011222223333333333222
Q ss_pred Hh----hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc-------cCChhhHHHHHHHHhhh
Q 012991 315 RF----EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR-------VMGEDDALRLRGHLRVR 383 (452)
Q Consensus 315 ~~----~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~L~~~ 383 (452)
.. ..-+..++++++++++.+.+.|.+. |+++..|.+ ++++|+.+++... ..+..+..++++.|.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~g--g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 370 (418)
T d1w7la_ 294 LLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQG--SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKN 370 (418)
T ss_dssp HTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSB--SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhhhhhhhhhhc-CCcccCCCc--eeEEEEECcccccccchhccccccccHHHHHHHHHHH
Confidence 11 1124566777888888899999876 777766655 7888988753110 11123456788887777
Q ss_pred cceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 384 FGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 384 ~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+||.+.++..+...+. .....++||||+. ++++++++.+++|+++..
T Consensus 371 ~gV~v~PG~~F~~~~~---------~~~~~~~iRis~~--~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 371 KGLVAIPVSIFYSVPH---------QKHFDHYIRFCFV--KDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp HCEECEEGGGGSCHHH---------HTTSCSEEEEECC--CCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEcchhhcCCCc---------cCCCCCEEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 8999977665421100 0123579999986 488899999999998864
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=8.7e-25 Score=216.60 Aligned_cols=335 Identities=15% Similarity=0.077 Sum_probs=219.9
Q ss_pred hHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEE
Q 012991 79 RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSV 158 (452)
Q Consensus 79 ~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v 158 (452)
..+..++.+.+++++|.++....++|+|||++...++....+.+ ..++++|+++..+|.|+.+++.. .|.++
T Consensus 93 ~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~----~~~~~~vi~~~~~H~s~~~a~~~----~g~~~ 164 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----RPKAKYIIWPRIDQKSCFKSMVT----AGFEP 164 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH----CTTCCEEEEECCCCHHHHHHHHH----TTCEE
T ss_pred HHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh----CCCCCEEEEcCcccHHHHHHHHH----cCCee
Confidence 45566788889999999755677888888865444433333222 35678999999999999888755 59998
Q ss_pred EEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-
Q 012991 159 VEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK- 236 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~- 236 (452)
+.++.. +.++.+.+ +++|+++|++.. ++++.+|+++++++++|.+.|+++|+++|++||+ ++|+|+|++.+...
T Consensus 165 ~~v~~~-~~~~~~~id~~~l~~~i~~~~--~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~-~l~vD~a~~~~~~~~ 240 (445)
T d3bc8a1 165 VVIENV-LEGDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICANYDI-PHVVNNAYGLQSSKC 240 (445)
T ss_dssp EEECCE-EETTEEECCHHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-CEEEECTTTTTCHHH
T ss_pred EEEEee-ccCcccccCHHHHHHHHHhcc--ccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCC-cEEEEccchhhhhhc
Confidence 888531 12334555 899999997542 3468999999999999999999999999999999 59999999876532
Q ss_pred -----ccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 237 -----IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 237 -----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
.+....++|++++|+||++++|.|.|+++.++......+ ...+.+..+....+.+..++.
T Consensus 241 ~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 305 (445)
T d3bc8a1 241 MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI---------------SKMYPGRASASPSLDVLITLL 305 (445)
T ss_dssp HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH---------------HHHSCSCBCSHHHHHHHHHHH
T ss_pred cccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHH---------------HHHHhhcccCcchHHHHHHHH
Confidence 122233689999999999999999888888764443201 001112222333344455555
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEe
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEV 388 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v 388 (452)
.+... +.....++...+.+++.+.|.++. +..+...+.. ....++.+... ......+..++...|.+ .||..
T Consensus 306 ~~g~~--~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~-~~~~~~~l~~~-~~~~~~~~~~l~~~L~~-~gI~~ 380 (445)
T d3bc8a1 306 SLGCS--GYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN-PISLAMTLKTI-DGHHDKAVTQLGSMLFT-RQVSG 380 (445)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTC-SSEEEEECTTT-SSSSSCHHHHHHHHHHH-TTCCS
T ss_pred HHhhh--cchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCC-CcceEEEeeec-cccCCCCHHHHHHHHHH-cCCCc
Confidence 55543 677778888888888888887653 4444333322 33333443211 11124466678888865 47754
Q ss_pred eecccCCCCC---CCC-CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcccc
Q 012991 389 PIHYQAPKDD---GQP-QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQV 445 (452)
Q Consensus 389 ~~~~~~~~~~---~~~-~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~~ 445 (452)
...+.+.... +.. .............++|++++.++|++|||+++++|+++++..++
T Consensus 381 ~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 381 ARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp CEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3222111000 000 00000001233457999999999999999999999999987543
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=6.8e-25 Score=208.93 Aligned_cols=312 Identities=13% Similarity=0.106 Sum_probs=212.5
Q ss_pred hccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC--CCCcEEEecChhH
Q 012991 33 FSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD--DVGEISLVDNATT 109 (452)
Q Consensus 33 ~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~i~~t~g~t~ 109 (452)
|...++++++|+.+... +.|+.+.+++.+.+.. . . ..+.+..+..++|++++++++.. ++++|++|+|+++
T Consensus 14 ~~~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~----~-~-~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~ 87 (334)
T d2f8ja1 14 YETEKRDKTYLALNENPFPFPEDLVDEVFRRLNS----D-A-LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADE 87 (334)
T ss_dssp CCCCCCCSEECSSCCCSSCCCHHHHHHHHHHCCT----T-G-GGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHH
T ss_pred ccccCCCceEEECCCCCCCCCHHHHHHHHHHhhc----c-h-hcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchh
Confidence 33456789999877433 6677788877665421 1 1 12223345678999999998743 3689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK 189 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 189 (452)
++.+++. ++|+|++.+|.|..+...+. ..|++++.++++ ++.... +.. .+
T Consensus 88 ~l~~l~~------------~~d~v~i~~P~y~~~~~~~~----~~g~~~v~v~~~----~~~~~~----~~~------~~ 137 (334)
T d2f8ja1 88 IIYVMML------------MFDRSVFFPPTYSCYRIFAK----AVGAKFLEVPLT----KDLRIP----EVN------VG 137 (334)
T ss_dssp HHHHHHH------------HSSEEEECSSCCHHHHHHHH----HHTCCEEECCCC----TTSCCC----CCC------CC
T ss_pred HHHHHhh------------hccccccccccccccccchh----ccCCcccccccc----cccccc----ccc------cc
Confidence 9987765 34899999999988765554 459999999553 221111 111 46
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc---cccccccCccEEEEcCcccCcCCCC--cEEE
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKEIGADFYVSNLHKWFFCPPS--VAFL 264 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l 264 (452)
+++++++++|+||||.+++.++|.+++ ++++ ++|+|+++..... .......+..+++.|++|+ ++.+| +|++
T Consensus 138 ~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~~~-~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~R~G~~ 214 (334)
T d2f8ja1 138 EGDVVFIPNPNNPTGHVFEREEIERIL-KTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKA-FSLAAQRVGYV 214 (334)
T ss_dssp TTEEEEEESSCTTTCCCCCHHHHHHHH-TTTC-EEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTT-SSCTTTCEEEE
T ss_pred cceEEEecccccccceeecHHHhhccc-ccee-EEeecccchhhcccccccccccCceEEEEecCccc-cchhhhhhhhc
Confidence 789999999999999999999887765 5688 7999988643221 1111222345788899996 55555 8999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
+.+++++.. + ..... ....+...+.+..+.+.... ..+..++++++.++.+.+.|.++ |+
T Consensus 215 ~~~~~~i~~-l-~~~~~-------------~~~~s~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~-g~ 274 (334)
T d2f8ja1 215 VASEKFIDA-Y-NRVRL-------------PFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREM-GY 274 (334)
T ss_dssp EECHHHHHH-H-HHHSC-------------TTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred ccchHHHHH-H-HHhhc-------------ccccchhhhhhccccccccc----chhhHHHHHHHHHHHHHHHHHHC-CC
Confidence 998877765 1 11100 01112222222222332221 35666778888899999999988 78
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
++..+. ++++|+.++ ..++.++.+.|.++ ||.++.. ++++|+|++
T Consensus 275 ~~~~~~---g~f~~~~~~-------~~~~~~~~~~L~~~-GI~vr~~---------------------~~~vRis~g--- 319 (334)
T d2f8ja1 275 RITDSR---GNFVFVFME-------KEEKERLLEHLRTK-NVAVRSF---------------------REGVRITIG--- 319 (334)
T ss_dssp EECCCC---SSEEEEECC-------HHHHHHHHHHHHHT-TEECEEE---------------------TTEEEEECC---
T ss_pred eECCCC---ceEEEEECC-------CCCHHHHHHHHHHC-CCEECCC---------------------CCeEEEEcC---
Confidence 776443 557888876 45778999999775 9998521 369999997
Q ss_pred CHHHHHHHHHHHHH
Q 012991 425 TLEDYEKFRDAVIL 438 (452)
Q Consensus 425 t~~di~~l~~~l~~ 438 (452)
|.+|+++++++|++
T Consensus 320 ~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 320 KREENDMILRELEV 333 (334)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 78999999999886
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.93 E-value=3.8e-25 Score=218.50 Aligned_cols=312 Identities=10% Similarity=0.061 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEEEe-cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEE
Q 012991 80 KGILESRAAVKDLINADDVGEISLV-DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSV 158 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~~t-~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v 158 (452)
....+....+++++|.+ ....++ .|+++++.+++.++.. ..++++|++++..|+|+.+++.. .|.++
T Consensus 113 ~~~~~~~~~~~~~~g~~--~~~~~~~~~t~~~~~~~l~a~r~------~~~~~~vi~s~~~H~s~~k~~~~----~g~~~ 180 (434)
T d2z67a1 113 ALTNKILESFFKQLGLN--VHAIATPISTGMSISLCLSAARK------KYGSNVVIYPYASHKSPIKAVSF----VGMNM 180 (434)
T ss_dssp HHHHHHHHHHHHHTTCC--CEEEEESSCHHHHHHHHHHHHHH------HHCCCEEEEECCCCHHHHHHHHH----TTCEE
T ss_pred HHHHHHHHHHHHhcCCC--cceeecCcHHHHHHHHHHHHHHH------hhcCceEEEeccCCHHHHHHHHH----hCCcc
Confidence 34455667788889986 444444 5555666666665521 24678999999999999887654 58888
Q ss_pred EEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc--
Q 012991 159 VEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-- 235 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-- 235 (452)
+.+++. +.++.+.+ +++|++.|+++.. ..++.+|+++++++++|.+.|+++|+++|++||+ ++|+|+|++.+..
T Consensus 181 ~~v~~~-~~~~~~~~d~~~l~~~i~~~~~-~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~-~l~vD~a~g~~~~~~ 257 (434)
T d2z67a1 181 RLVETV-LDGDRVYVPVEDIENAIKKEIE-LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDI-PHIINGAYAIQNNYY 257 (434)
T ss_dssp EEECCE-EETTEEECCHHHHHHHHHHHHH-TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-CEEEECTTTTTCHHH
T ss_pred eEEEee-cCCCccCCCHHHHHHHHHhhhh-cCCceEEEeccCcCCCccccCHHHHHHHHHHhCC-eEEEeccchhhhhhc
Confidence 888532 11233444 8999999975432 2467799999999999999999999999999999 5999999976542
Q ss_pred ---cccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 236 ---KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 236 ---~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
+......++|++++|+||++++|.|.|+++.+++.....+ ...+.++.+......+.+++..
T Consensus 258 ~~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~a~l~~ 322 (434)
T d2z67a1 258 LEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEI---------------SLSYPGRASATPVVNTLVSLLS 322 (434)
T ss_dssp HHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---------------HTTSCSCBCSHHHHHHHHHHHH
T ss_pred cccccccccCCcceEEEcCccccccCCCccccccCcHHHHHHH---------------HhhcccccccchHHHHHHHHHH
Confidence 2233445899999999999999999898888765433201 1111133344445555666666
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEee
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVP 389 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~ 389 (452)
+... |.+.+.++..++++++.+.|.++. +..+...+. ...+.+.+ ..++.++...|.++ ||...
T Consensus 323 ~~~~--g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~--~~~~~~~~--------~~~~~~l~~~L~~~-gI~g~ 389 (434)
T d2z67a1 323 MGSK--NYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVES--PIASCISV--------NSDPVEIAAKLYNL-RVTGP 389 (434)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCC--SSEEEEEC--------SSCHHHHHHHHHHT-TEESC
T ss_pred HHHh--cchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCC--Cceeeeec--------CCCHHHHHHHHHHc-CCeee
Confidence 6654 888889999999999999887753 556655544 33344444 33567888888765 98753
Q ss_pred ecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 390 IHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
....+....+++. ......+++|++++.++|++|||+++++|+++
T Consensus 390 ~v~~~l~~~g~~~-----~~~~~~~~l~~~~s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 390 RGIKKTDHFGNCY-----LGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp EEECTTCHHHHTC-----SSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred ehhhhccccCeee-----ecccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3222111000000 00233578999999999999999999999863
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.92 E-value=2e-24 Score=214.94 Aligned_cols=318 Identities=13% Similarity=-0.017 Sum_probs=206.2
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecCh-hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNA-TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~-t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
..+...+.++++.+|+++|++ +.+|+++| |+++..++.++ +++||+|++++.+|.|+..++..+ .
T Consensus 62 ~~~~~~i~eae~~~A~~~ga~---~a~f~~~Gtt~~n~a~i~a~--------~~~gd~Vi~~~~~H~Sv~~~~~~l---~ 127 (462)
T d1c4ka2 62 LIHEGPAVAAEKHAARVYNAD---KTYFVLGGSSNANNTVTSAL--------VSNGDLVLFDRNNHKSVYNSALAM---A 127 (462)
T ss_dssp TTTBTHHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHHTTT---T
T ss_pred cCCCHHHHHHHHHHHHHhCCC---eEEEECCchHHHHHHHHHHh--------cCCCCeEEecccchHHHHHHHHHH---h
Confidence 344556899999999999995 56666555 55555666665 689999999999999998777543 2
Q ss_pred CcEEEEEeCCCCCCCh--------HHH-HHH---------HHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHH
Q 012991 155 GGSVVEVQLPFPLASE--------EEI-INE---------FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKIC 216 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~--------~~~-~~~---------l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~ 216 (452)
+..+.+...+ .+.. ..+ .+. +++++ ..++.++++.+.+|..|.+.|+++|+++|
T Consensus 128 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~v~~~~~~~G~~~dl~~I~~ia 199 (462)
T d1c4ka2 128 GGRPVYLQTN--RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAK------WKRPFRLAVIQLGTYDGTIYNAHEVVKRI 199 (462)
T ss_dssp CCEEEEECEE--ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHT------CSCCBSEEEEESBCTTSEEECHHHHHHHH
T ss_pred cCCceeeecc--cccccccCCCChHHhhHHHHHhhhhhhcHHhhh------ccCCceeEEEEeeeeccchhhHHHHHHHH
Confidence 3344433221 1111 111 222 23333 46677777777888899999999999999
Q ss_pred HHcCCCEEEEecccccCCcccccc-------------ccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceecc
Q 012991 217 RDEGVDQVFVDAAHAMGSIKIDVK-------------EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHE 283 (452)
Q Consensus 217 ~~~~~~~~ivD~a~~~g~~~~~~~-------------~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~ 283 (452)
+++|+ ++++|+||+.+....+.. ..++|++++|+||+++++.|.+++..++..+.. ........
T Consensus 200 ~~~g~-~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~--~~~~~~~~ 276 (462)
T d1c4ka2 200 GHLCD-YIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKG--QLRYCDHK 276 (462)
T ss_dssp GGGBS-EEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTT--STTCCCHH
T ss_pred HHcCC-EEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccc--cchhhhHH
Confidence 99999 799999998876533221 124599999999987777776666666666653 11110000
Q ss_pred CCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc------------
Q 012991 284 FGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE------------ 351 (452)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------ 351 (452)
.. .........+++++..+.++..+..++... +.+++.++..+++.++++.+.++.+........
T Consensus 277 ~~-~~~~~~~~t~sp~~~~~asl~~a~~~~~~~--~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~ 353 (462)
T d1c4ka2 277 HF-NNSFNLFMSTSPFYPMYAALDVNAAMQEGE--AGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDT 353 (462)
T ss_dssp HH-HHHHHHHSCSSCCHHHHHHHHHHHHHHSHH--HHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCH
T ss_pred HH-HHhhhhcccCCchHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccch
Confidence 00 000122345777887777788777777643 456777788899999999998875432110000
Q ss_pred ------------------------cccce------EEEEcCCc-----cccCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 352 ------------------------ICAAM------VMVGLPSR-----LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 352 ------------------------~~~~~------~~~~~~~~-----~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
....+ +.+..+.. .-...+.++..+.+.|++ +||.+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~-~gI~~e~------ 426 (462)
T d1c4ka2 354 EDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRD-HGIIPEK------ 426 (462)
T ss_dssp HHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHH-TTCCCSE------
T ss_pred HhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHH-cCCeeec------
Confidence 00000 22222210 001124467788898865 6997631
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+.+|++++.++|++||++++++|+++.+.
T Consensus 427 --------------~~~~~i~~~~s~~~T~edid~li~aL~ei~r~ 458 (462)
T d1c4ka2 427 --------------SDLNSILFLMTPAETPAKMNNLITQLLQLQRL 458 (462)
T ss_dssp --------------ECSSEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------cCCCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 23468999999999999999999999998764
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=1.3e-22 Score=196.17 Aligned_cols=340 Identities=15% Similarity=0.127 Sum_probs=217.9
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND 131 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~ 131 (452)
.++-++++.+.+..- .+.. -+..+++++.+++++|.+ .+++++|||+|+.+++.++ .+++||
T Consensus 11 ~~~~~~~~~~~~~~~------~~~~--G~~v~~~E~~la~~~g~~---~ai~~~sgt~Al~~al~al-------~~~~gd 72 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSG------WITT--GPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMAL-------GIGEGD 72 (376)
T ss_dssp CHHHHHHHHHHHHHT------CCSS--SHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT-------TCCTTC
T ss_pred CHHHHHHHHHHHhcC------CCcC--CHHHHHHHHHHHHHHCcC---eEEEeCCHHHHHHHHHHHh-------CCCCCC
Confidence 344566676665431 1111 234788999999999995 7889999999999999987 468999
Q ss_pred EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH
Q 012991 132 TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR 210 (452)
Q Consensus 132 ~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~ 210 (452)
+|+++..+|.+...++.. .|.+++.+++.. +...+ +++|++.+ +++|++|+++|. .|...|++
T Consensus 73 eVi~~~~~~~~~~~ai~~----~g~~pv~~d~~~---~~~~~d~~~l~~~i------~~~tkaIi~~h~---~G~~~~~~ 136 (376)
T d1mdoa_ 73 EVITPSMTWVSTLNMIVL----LGANPVMVDVDR---DTLMVTPEHIEAAI------TPQTKAIIPVHY---AGAPADLD 136 (376)
T ss_dssp EEEEESSSCHHHHHHHHH----TTCEEEEECBCT---TTCCBCHHHHHHHC------CTTEEEECCBCG---GGCCCCHH
T ss_pred EEEEecccccccccchhc----cccceeeecccc---cccCCCHHHHHHhc------CCCCeEEEEeCC---CCCccchh
Confidence 999999999999888755 599999995521 12234 89999999 789999998764 69999999
Q ss_pred HHHHHHHHcCCCEEEEecccccCCcccc--ccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCC-
Q 012991 211 KLVKICRDEGVDQVFVDAAHAMGSIKID--VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNG- 287 (452)
Q Consensus 211 ~i~~l~~~~~~~~~ivD~a~~~g~~~~~--~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~- 287 (452)
+|.++|+++|+ ++|.|+||+.|...-+ ....+..++++..+|.+.++.| |+++.+++.+.. ....+..+..+..
T Consensus 137 ~i~~i~~~~~i-~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~i~t~~~~l~~-~~~~~~~~g~~~~~ 213 (376)
T d1mdoa_ 137 AIYALGERYGI-PVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEG-GIVVTDNPQFAD-KLRSLKFHGLGVDA 213 (376)
T ss_dssp HHHHHHHHHTC-CBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHH-HHHHHTBTTEECC-
T ss_pred HHHHHHHhcCc-eEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCC-CEEEEechhHHH-HHHhhcccCCcccc
Confidence 99999999999 7999999999976332 3334444556667798877666 888887654432 0000000000000
Q ss_pred ---------cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc---cccc
Q 012991 288 ---------LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE---ICAA 355 (452)
Q Consensus 288 ---------~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~ 355 (452)
........+......- +.+++-...-. .++.+.++.++.++++.+.|.++....+..... ....
T Consensus 214 ~~~~~~~~~~~~~~~~~g~n~~~~~--~~Aai~~~qL~--~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 289 (376)
T d1mdoa_ 214 WDRQSGGRAPQAEVLAPGYKYNLPD--LNAAIALAQLQ--KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWH 289 (376)
T ss_dssp ----------CCEESSCCCBCCCCH--HHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCS
T ss_pred cccccccccccccchhcccccccch--hhhhhhhhhhh--hhhHHHHHHhhhhhhhhhhccccccccccccccccccccc
Confidence 0001111122222221 22333322211 567788888999999999998875544433322 1122
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC---C------CCCccceEEecccccCCH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD---K------DGIITGYARISHQVYNTL 426 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~---~------~~~~~~~iRis~~~~~t~ 426 (452)
.+.+.++.. ....+.+++.+.|.++ ||.++.++.+.+. .....+ . .......+.+.++...|.
T Consensus 290 ~~~~~~~~~---~~~~~Rd~l~~~L~~~-gI~~~~~y~~~~~----~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~ 361 (376)
T d1mdoa_ 290 LFIIRVDEA---RCGITRDALMASLKTK-GIGTGLHFRAAHT----QKYYRERFPTLTLPDTEWNSERICSLPLFPDMTE 361 (376)
T ss_dssp CEEEECCHH---HHSSCHHHHHHHHHHT-TBCCBCCCCCGGG----SHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCH
T ss_pred ccccccccc---cchhhHHHHHHHHHHC-CCCeeeECcchhc----CHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCH
Confidence 333333210 0012346799999775 9998765443110 000000 0 011245688888888899
Q ss_pred HHHHHHHHHHHHHH
Q 012991 427 EDYEKFRDAVILLV 440 (452)
Q Consensus 427 ~di~~l~~~l~~~~ 440 (452)
+||+++++.|++++
T Consensus 362 ~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 362 SDFDRVITALHQIA 375 (376)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=1e-22 Score=193.21 Aligned_cols=329 Identities=10% Similarity=0.048 Sum_probs=205.7
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
...|.+.++++..+.|++++.+.. ......+..++..+++++.+++++|.+ .+++||+|||+|+..++.++
T Consensus 4 ~~~f~s~n~~g~~P~v~~A~~~a~------~~~~~~~~~~~~~~~l~~~la~~~g~~--~~v~f~~sGt~An~~a~~~~- 74 (345)
T d1v72a1 4 ALGFSSDNIAGASPEVAQALVKHS------SGQAGPYGTDELTAQVKRKFCEIFERD--VEVFLVPTGTAANALCLSAM- 74 (345)
T ss_dssp CCBCSCGGGCCCCHHHHHHHHHTT------SSCCCSTTCSHHHHHHHHHHHHHHTSC--CEEEEESCHHHHHHHHHHTS-
T ss_pred CcCcCCCCCCCCCHHHHHHHHHHh------ccCccccCCCHHHHHHHHHHHHHHCCC--cEEEECCchHHHHHHHHHHH-
Confidence 344544444444556999997642 112233456788999999999999985 78999999999999998865
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE-EEEe
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL-AIID 197 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l-v~~~ 197 (452)
...++.+++....|.++...+.. ....+..+..+ ....++.. ++.++..+.........+.. ++..
T Consensus 75 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 142 (345)
T d1v72a1 75 -------TPPWGNIYCHPASHINNDECGAP-EFFSNGAKLMT----VDGPAAKLDIVRLRERTREKVGDVHTTQPACVSI 142 (345)
T ss_dssp -------CCTTEEEEECTTSHHHHSSTTHH-HHHTTSCEEEE----CCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEE
T ss_pred -------HhcCCccccccccceeeechhhH-HHhcCcccccc----cccccccccHHHhhhhhcccccccccccceeeee
Confidence 47788888888888887665544 35556667666 33334444 88888888654322333433 3444
Q ss_pred ccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccccCCcccc-------ccccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 198 HITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHAMGSIKID-------VKEIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 198 ~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~-------~~~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
...++.|... +++++.++|++||+ ++++|++++.+....+ ......+.++.+.+|. ++.+.+.....
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 219 (345)
T d1v72a1 143 TQATEVGSIYTLDEIEAIGDVCKSSSL-GLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN--GVLAAEAIVLF 219 (345)
T ss_dssp ESSCTTSCCCCHHHHHHHHHHHHHTTC-EEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG--TCSSCEEEEES
T ss_pred eccccccccccchhhhhHHHHHHhcCc-eeeecccccceeccccccCHHHhhccccccccccCcccc--ccccccccccc
Confidence 4445555543 46778889999999 7999999875433221 1112345566666664 33333444443
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
...... .... ......++... ...+...+...... ........+...+..++.+.+.+++++.+.
T Consensus 220 ~~~~~~---~~~~---------~~~~~~~~~~~-~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 284 (345)
T d1v72a1 220 NTSLAT---EMSY---------RRKRAGHLSSK-MRFLSAQIDAYLTD--DLWLRNARKANAAAQRLAQGLEGLGGVEVL 284 (345)
T ss_dssp SGGGHH---HHHH---------HHHHTTCCCSS-THHHHHHHHHHTST--THHHHHHHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred hhhhhh---hccc---------cccccccccch-hhHHhhhhHHHHHH--hhhhhhccchhhHHHHHHHHHHhcCCcEec
Confidence 222221 0000 00001112122 21222222222222 134556666777888888888888888776
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
.|.. ++++++.++ ..+.+.|+++ ||.+... ...++.+|++++.++|+|
T Consensus 285 ~p~~--~niv~~~~~-----------~~~~~~L~~~-gi~v~~~------------------~~~~~~lR~~~~~~~T~e 332 (345)
T d1v72a1 285 GGTE--ANILFCRLD-----------SAMIDALLKA-GFGFYHD------------------RWGPNVVRFVTSFATTAE 332 (345)
T ss_dssp SCCC--SSEEEEEEC-----------HHHHHHHHHT-TCBCBCS------------------SSSTTEEEEECCTTCCHH
T ss_pred cCCC--ccEEEEEcC-----------HHHHHHHHHc-CCCcccc------------------CCCCCEEEEECCCCCCHH
Confidence 6654 678888775 2466778775 9887421 133579999999999999
Q ss_pred HHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILL 439 (452)
Q Consensus 428 di~~l~~~l~~~ 439 (452)
|||+++++|++.
T Consensus 333 did~~le~lr~a 344 (345)
T d1v72a1 333 DVDHLLNQVRLA 344 (345)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.89 E-value=7.3e-22 Score=189.95 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEE-Ee-CCcchhHHHHHHHHHHhcCcEE
Q 012991 81 GILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVL-ML-HCAFQAVKKSIQAYVTRAGGSV 158 (452)
Q Consensus 81 ~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl-~~-~~~~~s~~~~~~~~a~~~g~~v 158 (452)
..+++++..++.++....+++++|+|+++|+..++.++ .+++.|+ ++ .+.|+++..++.. .|+++
T Consensus 51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al---------~~~~~vi~~~~~~~~~~~~~~~~l----~g~~~ 117 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---------KPKKVIHYLPELPGHPSIERSCKI----VNAKY 117 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH---------CCSEEEEECSSSSCCTHHHHHHHH----TTCEE
T ss_pred hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh---------CCCCEEEEecCCCcchhHHHHHHh----cCCeE
Confidence 35677888888888765678999999999999999987 5666654 44 5789998776543 58776
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCC-cccccHHHHHHHHHHcCCCEEEEecccccCCccc
Q 012991 159 VEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI 237 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~ 237 (452)
... ++ ++++++++ +++|++|++++++|++ +.+.++++|+++|++||+ ++++|++|+.+....
T Consensus 118 v~~------~d----~e~l~~~i------~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~-~~i~De~y~~~~~~~ 180 (366)
T d2aeua1 118 FES------DK----VGEILNKI------DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEA-IVFVDDASGARVRLL 180 (366)
T ss_dssp EEE------SC----HHHHHTTC------CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTC-CEEEECTTHHHHHHH
T ss_pred ECC------CC----HHHHHHhc------CCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcE-EEEEecCcccccccc
Confidence 433 22 68899888 7899999999998864 456789999999999999 699999998654322
Q ss_pred c----ccccCccEEEEcCcccCcCCCCcEEEEEecCcccc
Q 012991 238 D----VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSS 273 (452)
Q Consensus 238 ~----~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~ 273 (452)
. ....++|++++|++|++.|+ +.|+++.+++++++
T Consensus 181 ~~~~~~~~~~~di~~~S~sK~~~g~-~~G~i~~~~~~i~~ 219 (366)
T d2aeua1 181 FNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDK 219 (366)
T ss_dssp TTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHH
T ss_pred ccCCCHhhcCceEEEeccccccccc-ceeEEEecHHHHHH
Confidence 1 22447899999999976555 46999999998876
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=3.3e-22 Score=190.47 Aligned_cols=311 Identities=16% Similarity=0.197 Sum_probs=208.7
Q ss_pred hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHH
Q 012991 73 FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT 152 (452)
Q Consensus 73 ~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~ 152 (452)
.|++...+..+.++++++++.|.+ ..++++||.+|+..++.++ +++||+|++++..|.+....+..+..
T Consensus 52 ~Y~R~~nPT~~~LE~~la~LEg~~---~a~~~~SGmaAi~~~l~~l--------~~~Gd~vl~~~~~Yg~t~~l~~~~~~ 120 (392)
T d1gc0a_ 52 FYSRISNPTLNLLEARMASLEGGE---AGLALASGMGAITSTLWTL--------LRPGDEVLLGNTLYGCTFAFLHHGIG 120 (392)
T ss_dssp -----CCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEESSCCSHHHHHHHHTGG
T ss_pred eecCCCChHHHHHHHHHHHHhCCc---ceeehhhHHHHHHHHHHhh--------ccCCCeeecccccchhhhhhhhhhhc
Confidence 356666778899999999999884 6788899999999999987 58999999999999999888887778
Q ss_pred hcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccccc
Q 012991 153 RAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAM 232 (452)
Q Consensus 153 ~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~ 232 (452)
+.|+++.+++ ..+ .+.+++++ .++|++|+++.|+||+..+.|++.|+++||++|+ +++||.+.+.
T Consensus 121 ~~Gi~~~~~d----~~d----~~~~~~ai------~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~-~~vvDnT~at 185 (392)
T d1gc0a_ 121 EFGVKLRHVD----MAD----LQALEAAM------TPATRVIYFESPANPNMHMADIAGVAKIARKHGA-TVVVDNTYCT 185 (392)
T ss_dssp GGTCEEEEEC----TTC----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTC-EEEEECTTTH
T ss_pred cCCcccccCC----ccC----HHHHHHhC------CCCCeEEEecccccceeeecchHHHHHHHHhcCC-EEEEecCccC
Confidence 8899999994 333 68899999 6899999999999999999999999999999999 8999998876
Q ss_pred CCc--cccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHH
Q 012991 233 GSI--KIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIP 307 (452)
Q Consensus 233 g~~--~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (452)
+.. |++ +|+|+++.|.+|+++| .| .|.++++++.+.+ ..........| +..+.. ...
T Consensus 186 P~~~~Pl~---~GaDivihS~TKyi~G-hsd~~~G~v~~~~~~~~~-~r~~~~~~~~G----------~~~~p~---da~ 247 (392)
T d1gc0a_ 186 PYLQRPLE---LGADLVVHSATKYLSG-HGDITAGIVVGSQALVDR-IRLQGLKDMTG----------AVLSPH---DAA 247 (392)
T ss_dssp HHHCCGGG---GTCSEEEEETTTTTTC-SSSCCCEEEEECHHHHHH-HHHTHHHHHTC----------CCCCHH---HHH
T ss_pred ccccChHH---hCCCEEEEecceeecC-CcccccccccchhHHHHH-HHHHHHHHccC----------CcCChh---hHH
Confidence 544 444 4899999999998655 33 5788888776653 10010000011 111111 112
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhh
Q 012991 308 SAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDD 372 (452)
Q Consensus 308 ~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 372 (452)
..++-++ .+..-.++..+++..+.+.|++.+.++ |..|. ...++++.|.+.. +...
T Consensus 248 ll~rgl~----TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~-----~~~~ 318 (392)
T d1gc0a_ 248 LLMRGIK----TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-----GIGA 318 (392)
T ss_dssp HHHHHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-----HHHH
T ss_pred HHHhccc----cHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC-----CHHH
Confidence 2223333 455557778899999999999887653 43331 1237888888851 1223
Q ss_pred HHHHHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 373 ALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 373 ~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
...+++.|. -+++....+... +....+.... .+.+.+..++.||+|++. ||++.+++.|++.++
T Consensus 319 ~~~f~~~L~-l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~ 389 (392)
T d1gc0a_ 319 GRRFMNALQ-LFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL----EDIDDLLADVQQALK 389 (392)
T ss_dssp HHHHHHHCS-SSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-cceEeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeee----CCHHHHHHHHHHHHH
Confidence 456777763 234443322110 0000000000 011125567899999985 555556666665554
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.88 E-value=1.6e-22 Score=197.33 Aligned_cols=336 Identities=12% Similarity=0.040 Sum_probs=207.6
Q ss_pred CCeEEeccCC----CC--CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCCcEEEecC
Q 012991 38 HGVARINNGS----FG--SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVGEISLVDN 106 (452)
Q Consensus 38 ~~~~~l~~~~----~~--~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~i~~t~g 106 (452)
++.|+|..|. .+ +.++.|.++....... +.. ..|.+..+..++|+++++++... +++.++.+.+
T Consensus 28 ~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~----~~~-~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~ 102 (401)
T d7aata_ 28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK----KMD-KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----TCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhC----CCC-CCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEecc
Confidence 4578999883 22 4457788887776543 222 13556677888999999876432 1456655433
Q ss_pred --hh---HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 107 --AT---TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 107 --~t---~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++ .++..++.++ +++||+|++++|.|+.....+ ...|.+++.+++.. ++.... .+.+.+.
T Consensus 103 ~~~~g~~~~~~~~~~~l--------~~pGd~Vlv~~P~y~~y~~~~----~~~g~~~~~~~~~~--~~~~~~~~~~~~~~ 168 (401)
T d7aata_ 103 ISGTGSLRVGANFLQRF--------FKFSRDVYLPKPSWGNHTPIF----RDAGLQLQAYRYYD--PKTCSLDFTGAMED 168 (401)
T ss_dssp EHHHHHHHHHHHHHHHH--------CTTCCEEEEEESCCTTHHHHH----HHTTCEEEEEECEE--TTTTEECHHHHHHH
T ss_pred chHHHHHHHHHHhhHhh--------cCCCceEEEecCCCcchhhHH----HHcCCeEEEEeccc--cccccccHHHHHHH
Confidence 22 3455555554 699999999999999875554 45699999997632 122222 6666666
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc---------ccccc-CccEE
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEI-GADFY 247 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~-~~d~~ 247 (452)
+... +++++++++++++||||.+++ +++|+++|++|++ ++|.|+++..-...- ..... .--++
T Consensus 169 ~~~~---~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~-~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~ 244 (401)
T d7aata_ 169 ISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNL-LAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVL 244 (401)
T ss_dssp HTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEE
T ss_pred HhcC---CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceE-EEEEeccchhhhcCCcccchhhhhhhhhhhcccce
Confidence 6543 578899999999999999997 4578999999999 799999986533210 11111 22356
Q ss_pred EEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH---HHHHhhcCHHH
Q 012991 248 VSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT---FVSRFEGGIDG 322 (452)
Q Consensus 248 ~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~~g~~~ 322 (452)
+.|++|. ++.+| +|++.+..+..+. . ....... . ......+ ...+...+......+. +..++....+.
T Consensus 245 ~~s~sk~-~~~~G~RiG~~~~~~~~~~~-~-~~~~~~~-~--~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 317 (401)
T d7aata_ 245 SQSYAKN-MGLYGERAGAFTVICRDAEE-A-KRVESQL-K--ILIRPMY-SNPPMNGARIASLILNTPELRKEWLVEVKG 317 (401)
T ss_dssp EEECTTT-SCCGGGCEEEEEEECSSHHH-H-HHHHHHH-H--HHHHHHH-SSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred eEecccc-ceeeccccceeecchHHHHH-H-HHHHHHH-H--HHhhccc-cccchHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6788896 67666 7999988877764 0 0000000 0 0000000 1112222222222221 11111113566
Q ss_pred HHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
+++++..+++.+.+.|.+... +....+++ +.|+|+.+ +. ++++.|.+++||++.
T Consensus 318 ~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~--G~F~~~~l----------s~-e~~~~L~~e~gV~~~---------- 374 (401)
T d7aata_ 318 MADRIISMRTQLVSNLKKEGSSHNWQHITDQI--GMFCFTGL----------KP-EQVERLTKEFSIYMT---------- 374 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCC--SSEEECCC----------CH-HHHHHHHHHHCEECC----------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcceECCCC--eEEEecCC----------CH-HHHHHHHHhCCEEEC----------
Confidence 777788889999999988632 22222332 56666433 33 456777777899873
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+ .+|||++.. ++++|++++++|.++++
T Consensus 375 -------------p-g~Ris~a~~-~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 375 -------------K-DGRISVAGV-ASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp -------------T-TCEEEGGGC-CTTTHHHHHHHHHHHHC
T ss_pred -------------C-CcEEEeccC-CHHHHHHHHHHHHHHhC
Confidence 1 259998753 67789999999999874
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.1e-21 Score=186.12 Aligned_cols=331 Identities=14% Similarity=0.098 Sum_probs=206.2
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhc
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
+.|-.-+.+.+++++++++.+.. .+... |...+...++++.+++++|.+ .+++++|||+|+..++.++
T Consensus 2 ~~~~~~~~t~p~p~v~~A~~~a~-----~g~~~--yg~~p~~~~le~~lA~~~G~~---~~~~~~sGt~A~~~al~a~-- 69 (343)
T d1m6sa_ 2 IDLRSDTVTKPTEEMRKAMAQAE-----VGDDV--YGEDPTINELERLAAETFGKE---AALFVPSGTMGNQVSIMAH-- 69 (343)
T ss_dssp EECSCGGGCCCCHHHHHHHHTCC-----CCCGG--GTCCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHH--
T ss_pred cccccccCCCCCHHHHHHHHhhh-----cCCcc--cCCCHHHHHHHHHHHHHHCCC---eEEEeCCHHHHHHHHHHHH--
Confidence 45533332322445999986531 12222 345567899999999999984 7899999999999999987
Q ss_pred ccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEec-c
Q 012991 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDH-I 199 (452)
Q Consensus 121 ~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~-~ 199 (452)
.++|+.+++..+.|.+....... +...+..+..++. +.....++.+++.+.....+..++..++++. +
T Consensus 70 ------~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 138 (343)
T d1m6sa_ 70 ------TQRGDEVILEADSHIFWYEVGAM-AVLSGVMPHPVPG----KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTH 138 (343)
T ss_dssp ------CCTTCEEEEETTCHHHHSSTTHH-HHHTCCEEEEECE----ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSB
T ss_pred ------hccCCceeccccccceeeecccc-cccccceeecccc----ccCccCHHHHHHhhhhhhccccccccccccccc
Confidence 47899999999888765443332 3445667766632 2211126777878865444445666655554 4
Q ss_pred CCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccccc-----cccCccEEEEcCcccCcCCCCcEEEEEecCcc
Q 012991 200 TSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKIDV-----KEIGADFYVSNLHKWFFCPPSVAFLYCRKSIL 271 (452)
Q Consensus 200 ~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~-----~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~ 271 (452)
+++.|.+.| +++|.++|+++++ ++++|+++..+...... .....+..+++.+|..++..+ |+....++.+
T Consensus 139 ~~~~~~~~~~~~l~~i~~~~~~~g~-~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 216 (343)
T d1m6sa_ 139 NRSGGRVVPLENIKEICTIAKEHGI-NVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG-SVVVGDRDFI 216 (343)
T ss_dssp TTTTSBCCCHHHHHHHHHHHHHHTC-EEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSC-EEEEECHHHH
T ss_pred ccCCceecCHHHHHHHHHHHHhcCe-EEEeccccccccccccccchhhhcccccccccccccccccccc-ccccccHHHH
Confidence 555666655 5577778899999 89999998654322111 111345666776776566654 6666666555
Q ss_pred ccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc
Q 012991 272 SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE 351 (452)
Q Consensus 272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 351 (452)
.. . ... ...+.++.......+ ......... ... ..+...++..++.+.+..+.+.....+..
T Consensus 217 ~~-~-~~~-----------~~~~~~~~~~~~~~~-a~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (343)
T d1m6sa_ 217 ER-A-RKA-----------RKMLGGGMRQAGVLA-AAGIIALTK---MVD-RLKEDHENARFLALKLKEIGYSVNPEDVK 278 (343)
T ss_dssp HH-H-HHH-----------HHHHTCCCSSTHHHH-HHHHHHHHH---SST-THHHHHHHHHHHHHHHHHHTCBCCGGGCC
T ss_pred hh-h-Hhh-----------CcccccccchhHHHH-Hhhhhhhhh---hHH-HHHHHHHHHHHhhhHHHHhccCccCCCCC
Confidence 43 0 011 000111122211111 112222222 112 23334566667777777775554444433
Q ss_pred cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHH
Q 012991 352 ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 431 (452)
.+++++.++. .+.++.++++.|.++ ||.++.. .++++|++++..+|+||||+
T Consensus 279 --~~~v~~~~~~-----~~~~a~~l~~~L~~~-Gi~v~~~--------------------~~~~iRi~~~~~~t~edid~ 330 (343)
T d1m6sa_ 279 --TNMVILRTDN-----LKVNAHGFIEALRNS-GVLANAV--------------------SDTEIRLVTHKDVSRNDIEE 330 (343)
T ss_dssp --SSEEEEECTT-----SSSCHHHHHHHHHHH-TEECEEE--------------------ETTEEEEECCTTSCHHHHHH
T ss_pred --ceEEEEEeCC-----CcccHHHHHHHHHHC-CCEEecC--------------------CCCEEEEECCCCCCHHHHHH
Confidence 6788888762 245778999999875 9998643 24689999998899999999
Q ss_pred HHHHHHHHHhc
Q 012991 432 FRDAVILLVEE 442 (452)
Q Consensus 432 l~~~l~~~~~~ 442 (452)
++++|++++++
T Consensus 331 ~v~~l~~v~~~ 341 (343)
T d1m6sa_ 331 ALNIFEKLFRK 341 (343)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999976
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.88 E-value=3.1e-21 Score=183.69 Aligned_cols=315 Identities=15% Similarity=0.163 Sum_probs=213.2
Q ss_pred hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH
Q 012991 72 DFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV 151 (452)
Q Consensus 72 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a 151 (452)
..|++...+..+.++++++++.|.+ ..++++||.+|+..++.++ +++||+|++++..|......+....
T Consensus 55 ~~Y~R~~nPT~~~LE~~la~LEgg~---~a~~~sSGmaAi~~~l~~l--------l~~Gd~vi~~~~~Yg~t~~~~~~~l 123 (397)
T d1y4ia1 55 YIYTRLGNPTTDALEKKLAVLERGE---AGLATASGISAITTTLLTL--------CQQGDHIVSASAIYGCTHAFLSHSM 123 (397)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEESSSCHHHHHHHHTHH
T ss_pred ceeeCCCCHHHHHHHHHHHHHhCCc---cceeehHHHHHHHHHHhhc--------cCCCCeeeeecccccccchhhhccc
Confidence 3466666778899999999999884 6788889999999999887 6999999999999999988887777
Q ss_pred HhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccc
Q 012991 152 TRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 152 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
.+.|+++.+++ ..+ .+.+++++ .++|++|+++.|.||+..+.|++.|+++||++|+ +++||.+.+
T Consensus 124 ~~~Gi~~~~vd----~~d----~~~~~~~i------~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi-~~vvDnT~a 188 (397)
T d1y4ia1 124 PKFGINVRFVD----AGK----PEEIRAAM------RPETKVVYIETPANPTLSLVDIETVAGIAHQQGA-LLVVDNTFM 188 (397)
T ss_dssp HHTTCEEEEEC----TTS----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CCCceEeeccC----CCC----HHHHHHhc------CCCCcEEEecCCcccceeecccHHHHHHhhcCCc-eEEecCccc
Confidence 88999999994 333 58899999 6899999999999999999999999999999999 899999877
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
.+... ..-.+|+|+++.|.+|+++| .+ .|.++++++.+.+ .+........| +.++.. ....
T Consensus 189 tP~~~-~Pl~~GaDivihS~TKyi~G-hsdvl~G~v~~~~~~~~~-~r~~~~~~~~G----------~~l~p~---~a~l 252 (397)
T d1y4ia1 189 SPYCQ-QPLQLGADIVVHSVTKYING-HGDVIGGIIVGKQEFIDQ-ARFVGLKDITG----------GCMSPF---NAWL 252 (397)
T ss_dssp CTTTC-CGGGGTCSEEEEETTTTTTC-SSCCCCEEEEECHHHHHH-HHHTHHHHTTC----------CCCCHH---HHHH
T ss_pred CcccC-cchhcCCCEEEEehhhhcCC-CcceeeeccCCCHHHHHH-HHHHHHHhCcC----------CcCCHH---HHHH
Confidence 65442 22334899999999998655 33 5788888776653 10000000011 111111 1122
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCcc--------------cccceEEEEcCCccccCChhhH
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPPE--------------ICAAMVMVGLPSRLRVMGEDDA 373 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 373 (452)
.++-++ .+.--.++..+++..+.++|++.+.+ +|..|.- ..++++.|.+.. +...+
T Consensus 253 ~~rgl~----TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~-----~~~~~ 323 (397)
T d1y4ia1 253 TLRGVK----TLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG-----GLEAG 323 (397)
T ss_dssp HHHHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT-----HHHHH
T ss_pred HHcCcC----cHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC-----CHHHH
Confidence 233333 34555677789999999999998776 3444411 247889998751 12234
Q ss_pred HHHHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 374 LRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 374 ~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++.+.|. -+++.+..+... +....+..... +.+.+..++.+|+|++. ||++.+++.|++.++.
T Consensus 324 ~~f~~~L~-l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl----Ed~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 324 RRMINSVE-LCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL----EDPEDIINDLEHAIRK 394 (397)
T ss_dssp HHHHHTCS-SSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-ccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc----CCHHHHHHHHHHHHHH
Confidence 56666663 234433322110 00000100000 11225577899999984 5555666666666543
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=2.6e-20 Score=176.90 Aligned_cols=310 Identities=15% Similarity=0.157 Sum_probs=205.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.++++++++-+.+ ..+.++||-+|+.. +.++ +++||+|++....|.+....+.....+
T Consensus 43 Y~R~~nPt~~~le~~la~LE~~~---~a~~fsSGMaAisa-ll~l--------l~~Gd~vv~~~~~Yg~t~~l~~~~~~~ 110 (380)
T d1ibja_ 43 YTRSGNPTRDALESLLAKLDKAD---RAFCFTSGMAALSA-VTHL--------IKNGEEIVAGDDVYGGSDRLLSQVVPR 110 (380)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHH-HHTT--------SCTTCEEEEESSCCHHHHHHHHHTSGG
T ss_pred eeCCCChHHHHHHHHHHHHcCCc---eEEehhhHHHHHHH-HHHh--------hCCCCEEEEEecccccccchhhhhhcc
Confidence 55556677899999999999884 66778888888864 4433 689999999999999998888776777
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|+++.+++ ..+ .+.+++++ .+++++|+++.|+||+..+.|+++|+++||++|+ +++||.+.+.+
T Consensus 111 ~gi~~~~~d----~~~----~~~~~~ai------~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~-~~vVDnT~atP 175 (380)
T d1ibja_ 111 SGVVVKRVN----TTK----LDEVAAAI------GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGA-LVLVDNSIMSP 175 (380)
T ss_dssp GTCEEEEEC----TTS----HHHHHHHC------CSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTC-EEEEECTTTCT
T ss_pred ccccccccC----cch----HHHHHHHh------ccCccEEEeccccccccccccHHHHHHHHHHcCC-eEEeecccccc
Confidence 899999984 233 57888888 6899999999999999999999999999999999 89999987655
Q ss_pred CccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
... ..-.+|+|+++.|.+|++.| .| .|.++.+++.....+ ... ....| +..+... ....+
T Consensus 176 ~~~-~Pl~~GaDiVvhS~TKyi~G-hsDv~~G~v~~~~~~~~~~~-~~~-~~~~G----------~~l~p~~---a~ll~ 238 (380)
T d1ibja_ 176 VLS-RPLELGADIVMHSATKFIAG-HSDVMAGVLAVKGEKLAKEV-YFL-QNSEG----------SGLAPFD---CWLCL 238 (380)
T ss_dssp TTC-CGGGTTCSEEEEETTTTTTC-SSCCCCEEEEECSHHHHHHH-HHH-HHHTT----------CBCCHHH---HHHHH
T ss_pred ccc-cccccCCCEEEecccceecc-ccCccccccccchhhHHHHH-Hhh-ccccC----------CcCCHHH---HHHHH
Confidence 432 22234899999999998654 33 577777754432201 000 00001 1111111 12222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
+-++ .+..-.++..+++..+.+.|.+.+.++ |..|. ...++++.|.+. +...+..
T Consensus 239 rgl~----Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~------~~~~a~~ 308 (380)
T d1ibja_ 239 RGIK----TMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG------SVALSKH 308 (380)
T ss_dssp HHHT----THHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS------CHHHHHH
T ss_pred hcch----hhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCcccccccccccccccccccccc------HHHHHHH
Confidence 2222 455567778899999999999987764 43331 123567777664 3445667
Q ss_pred HHHHHhhhcceEeeeccc-----CCCCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 376 LRGHLRVRFGVEVPIHYQ-----APKDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+.|. -+.+.+..+.. .+....+.... .+++.+..++.||+|++. ||.+.+++.|++.++.
T Consensus 309 f~d~l~-l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----E~~eDLi~Dl~qAl~~ 377 (380)
T d1ibja_ 309 LVETTK-YFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 377 (380)
T ss_dssp HHHHCS-SSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred HHHhCC-cCeEeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence 777773 23433322111 00111111111 122336678899999984 5566677777766643
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.87 E-value=2.1e-20 Score=175.57 Aligned_cols=325 Identities=11% Similarity=0.089 Sum_probs=190.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccc
Q 012991 44 NNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 44 ~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~ 123 (452)
|.+..+..|+ |++++.+... .....+...+..+++|+++++++|++ +++|+||+|||+|+..++.++
T Consensus 6 nd~~~g~~P~-v~eAl~~~~~------~~~~~y~~~~~~~~lr~~ia~~~g~~-~~~v~~tsggtean~~a~~~~----- 72 (340)
T d1svva_ 6 NDYSVGMHPK-ILDLMARDNM------TQHAGYGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLA----- 72 (340)
T ss_dssp CSCSSCCCHH-HHHHHHHHTT------CCCCSTTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHH-----
T ss_pred cCCCCCCCHH-HHHHHHHHhh------cCCCCCCCCHHHHHHHHHHHHHhCCC-cceEEEcCCHHHHHHHHHHHH-----
Confidence 5555566555 9999886421 11123445778899999999999997 689999999999999999876
Q ss_pred cCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCC
Q 012991 124 EGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMP 203 (452)
Q Consensus 124 ~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t 203 (452)
..+++++++....|.+....... ...+............... +...............+..+++....++.
T Consensus 73 ---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
T d1svva_ 73 ---LRPWEAVIATQLGHISTHETGAI--EATGHKVVTAPCPDGKLRV----ADIESALHENRSEHMVIPKLVYISNTTEV 143 (340)
T ss_dssp ---CCTTEEEEEETTSHHHHSSTTHH--HHTTCCEEEECCTTSCCCH----HHHHHHHHHSCSTTSCEEEEEEEESSCTT
T ss_pred ---hhhccccccccccceeeeecccc--cccceeeeecccccccccc----hhHHHHhhhhhcccCCcceeeeecccccc
Confidence 58888999988888776544333 2223333333221111111 11111111111112333444444444555
Q ss_pred ccccc---HHHHHHHHHHcCCCEEEEecccccCCccccccc-------cCccEEEEcCcccCcCCCCcEEEEEecCcccc
Q 012991 204 CVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE-------IGADFYVSNLHKWFFCPPSVAFLYCRKSILSS 273 (452)
Q Consensus 204 G~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~-------~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~ 273 (452)
|.+.+ +..+.+.|++++. ++++|+++..+....+... ...++...++.|. .+..+.+...........
T Consensus 144 ~~~~~~~~~~~~~~~~~~~g~-~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 221 (340)
T d1svva_ 144 GTQYTKQELEDISASCKEHGL-YLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILNDALKPN 221 (340)
T ss_dssp SCCCCHHHHHHHHHHHHHHTC-EEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSGGGCTT
T ss_pred cccccHHHhhhhhcccccccc-eeeeeccceeeeecccccccccccccccceeeecCCccc-cccccccccccchhhhhh
Confidence 66654 5567889999999 7999999865443332221 1245666777774 333333333332222221
Q ss_pred CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccc
Q 012991 274 DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEIC 353 (452)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 353 (452)
.... .....++.+. ...+..+++..+.. .+.....++...++.++...|.+. |+++..|..
T Consensus 222 --~~~~-----------~~~~~~~~~~-~~~~~aa~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~-- 282 (340)
T d1svva_ 222 --ARHL-----------IKQRGALMAK-GWLLGIQFEVLMKD--NLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSA-- 282 (340)
T ss_dssp --HHHH-----------HHHTTCCCTT-THHHHHHHHHHTST--THHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCS--
T ss_pred --hhhh-----------cccccCccch-hhHHHHHHHHHhhh--hHHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCC--
Confidence 0000 0001122222 22222233333332 256677778888899999988876 888777654
Q ss_pred cceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHH
Q 012991 354 AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFR 433 (452)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~ 433 (452)
++++++.++ + ...+.|.++ ++........ ...+++|+|++.++|++|||+++
T Consensus 283 ~~~v~~~~~-------~----~~~~~l~~~-~~~~~~~~~~----------------~~~~~vR~s~~~~~t~edid~~l 334 (340)
T d1svva_ 283 SNQLFPILE-------N----TMIAELNND-FDMYTVEPLK----------------DGTCIMRLCTSWATEEKECHRFV 334 (340)
T ss_dssp SSEECBEEE-------H----HHHHHHTTT-EECEEEEEET----------------TTEEEEEEECCTTCCHHHHHHHH
T ss_pred ceEEEEeCC-------H----HHHHHHHHh-hhhhcccccC----------------CCCcEEEEECCCCCCHHHHHHHH
Confidence 667777664 2 344555554 3332222221 33679999999999999999999
Q ss_pred HHHHHH
Q 012991 434 DAVILL 439 (452)
Q Consensus 434 ~~l~~~ 439 (452)
++|+++
T Consensus 335 ~~l~~l 340 (340)
T d1svva_ 335 EVLKRL 340 (340)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 999874
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=3.6e-22 Score=188.57 Aligned_cols=346 Identities=15% Similarity=0.107 Sum_probs=234.2
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPDD-FYF--NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
+..+.|- ++-...++.|++++...+..-.+ +|+. +|. ...+++...+.++..++||++ ..-+-..||+.|+.
T Consensus 26 ~~~i~Li-aSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~--~anVqp~SGs~AN~ 102 (416)
T d1dfoa_ 26 EEHIELI-ASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD--YANVQPHSGSQANF 102 (416)
T ss_dssp HHSEECC-TTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHH
T ss_pred HcCceEe-cCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCC--cceeecccCccHHH
Confidence 4566665 45667778899998877654222 2222 121 233555666778889999995 33355678999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHH---HHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKK---SIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~---~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
.++.++ ++|||+|+..+..|.++.. .... .....+...+ +.+..+.+ ++++++.+++
T Consensus 103 av~~Al--------l~pGD~Il~l~l~~GGHlshg~~~~~--~g~~~~~~~y----~~d~~~~IDyd~l~~~a~~----- 163 (416)
T d1dfoa_ 103 AVYTAL--------LEPGDTVLGMNLAHGGHLTHGSPVNF--SGKLYNIVPY----GIDATGHIDYADLEKQAKE----- 163 (416)
T ss_dssp HHHHHH--------CCTTCEEEEECTTTTCCGGGTCTTSH--HHHHSEEEEE----CBCSSSSBCHHHHHHHHHH-----
T ss_pred HHHHHh--------cCCCCeeeeccccccccccccccccc--cCceEEEEec----ccCCccCccHHHHHHHHHH-----
Confidence 999988 6999999998665554322 1111 1112455555 33434445 8999998873
Q ss_pred CceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCCCcEE
Q 012991 189 KMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
.+|++|++.. +.....+|++++.++|++.|+ ++++|.+|..|.+ +-.+. .+|++++|+||+|.||.| |+
T Consensus 164 ~kPklIi~G~--S~y~r~~d~~~~reiad~vga-~l~~D~aH~~GLIa~g~~~sP~~--~aDvvt~tThKtlrGPrg-gi 237 (416)
T d1dfoa_ 164 HKPKMIIGGF--SAYSGVVDWAKMREIADSIGA-YLFVDMAHVAGLVAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GL 237 (416)
T ss_dssp HCCSEEEEEC--SSCCSCCCHHHHHHHHHHTTC-EEEEECTTTHHHHHHTSSCCCTT--TSSEEEEESSSTTCCCSC-EE
T ss_pred hccceEEecc--cccccccCHHHHHHHHHhcCc-eEEcchhhhhcceeccccCCccc--ccceeeeehhhcccCCCc-eE
Confidence 7899999864 445678999999999999999 8999999977643 22232 369999999999999998 99
Q ss_pred EEEecC---ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 264 LYCRKS---ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 264 l~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
++.+++ +.++ +.... |.+ ..|.|....+.+...++..+.+- .++.+.+++.++++.|.+.|.+
T Consensus 238 I~~~~~~~~~~~~-i~~av----fPg-------~qggp~~~~iaa~Aval~Ea~~~--~fk~Y~~qvv~NA~~La~~L~~ 303 (416)
T d1dfoa_ 238 ILAKGGSEELYKK-LNSAV----FPG-------GQGGPLMHVIAGKAVALKEAMEP--EFKTYQQQVAKNAKAMVEVFLE 303 (416)
T ss_dssp EEESSCCHHHHHH-HHHHH----TTT-------TCSSCCHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccchHhHHHH-HHhhh----Ccc-------cccCccHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 888743 2222 11111 111 01445555666666666654322 5788899999999999999998
Q ss_pred HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc
Q 012991 341 AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420 (452)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 420 (452)
. |+++.... ...+++++.+.. .+.+..++.+.|.+ .||.+.....+.... ....+..|||+.
T Consensus 304 ~-G~~iv~gg-TdnHlvlvdl~~-----~~~~G~~a~~~Le~-~gI~~Nkn~iP~d~~----------~~~~~SGiRiGT 365 (416)
T d1dfoa_ 304 R-GYKVVSGG-TDNHLFLVDLVD-----KNLTGKEADAALGR-ANITVNKNSVPNDPK----------SPFVTSGIRVGT 365 (416)
T ss_dssp T-TCEEGGGS-CSSSEEEEECGG-----GTCCHHHHHHHHHH-TTEECEECCCTTCSS----------CTTTCSEEEEEC
T ss_pred C-CcccccCC-CCCceeEEEecc-----cCCCHHHHHHHHHH-cCeEEeCCcCCCCCC----------CCCCCCceEeCC
Confidence 7 88876432 236788887742 25577778788855 699986433332110 024467899998
Q ss_pred cccC----CHHHHHHHHHHHHHHHhcc
Q 012991 421 QVYN----TLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 421 ~~~~----t~~di~~l~~~l~~~~~~~ 443 (452)
...+ +++|++++.+.|.++++..
T Consensus 366 ~a~TtrG~~e~d~~~iA~~I~~~l~~~ 392 (416)
T d1dfoa_ 366 PAITRRGFKEAEAKELAGWMCDVLDSI 392 (416)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 7654 4799999999999998653
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.86 E-value=6.4e-21 Score=186.49 Aligned_cols=361 Identities=11% Similarity=0.013 Sum_probs=211.2
Q ss_pred CCCHHHHHhhhccC-CCCeEEeccCC----C--CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCC
Q 012991 23 CISEAEIRDEFSHH-QHGVARINNGS----F--GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINA 95 (452)
Q Consensus 23 ~~~~~~ir~~~~~~-~~~~~~l~~~~----~--~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 95 (452)
+..+-.+.++|... .+..|+|..|. . .+.++.|.++....... ......|.+..+..++|+++++++.-
T Consensus 14 ~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~----~~~~~~Y~p~~G~p~lreaia~~~~~ 89 (412)
T d1ajsa_ 14 PVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----SSLNHEYLPILGLAEFRTCASRLALG 89 (412)
T ss_dssp CCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----TTCCCCCCCTTCCHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhC----CCcCCCCCCCCCCHHHHHHHHHHHhc
Confidence 33444566666532 34678998883 2 24456677776654422 11112456677788899999988632
Q ss_pred C-----CCC--cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 012991 96 D-----DVG--EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA 168 (452)
Q Consensus 96 ~-----~~~--~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~ 168 (452)
. ..+ .++.|.+++.++..+..++...+. ..+++||+|++++|.|+.....+.. .|.+++.+++..+ +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~pGd~Vlv~~P~y~~y~~~~~~----~G~~~v~~~~~~~-~ 163 (412)
T d1ajsa_ 90 DDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYN-GTNNKDTPVYVSSPTWENHNGVFTT----AGFKDIRSYRYWD-T 163 (412)
T ss_dssp TTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSS-SSSCCCSCEEEEESCCTHHHHHHHH----TTCSCEEEEECEE-T
T ss_pred cCCcccccccceeecccchhhHHHHHHHHHHHHhh-hcCCCCCEEEEeCCcchhhHHHHHH----cCCeEEEeecccc-c
Confidence 1 123 345677777777666655532221 2468999999999999987666543 5776544332101 1
Q ss_pred ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc-------
Q 012991 169 SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI------- 237 (452)
Q Consensus 169 ~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~------- 237 (452)
..... .+.+++.+... .++++++++++|+||||.+++ +++|+++|++|++ +++.|++|......-
T Consensus 164 ~~~~~d~~~~~~~~~~~---~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~-~ii~De~Y~~l~~~~~~~~~~~ 239 (412)
T d1ajsa_ 164 EKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL-FPFFDSAYQGFASGNLEKDAWA 239 (412)
T ss_dssp TTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTTTTSCHHHHTHH
T ss_pred ccccccHHHHHHHHHhc---cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCE-EEEecHhhhhhhcCCcccchhh
Confidence 11112 45555554432 578899999999999999998 6678999999999 799999986432210
Q ss_pred ---cccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH-
Q 012991 238 ---DVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT- 311 (452)
Q Consensus 238 ---~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~- 311 (452)
........+++.|++|. ++.+| +|++++....... + ........ .........++...+.++...+.
T Consensus 240 ~~~~~~~~~~~~~~~s~sk~-~~~~G~R~G~~~~~~~~~~~-~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 312 (412)
T d1ajsa_ 240 IRYFVSEGFELFCAQSFSKN-FGLYNERVGNLTVVAKEPDS-I-LRVLSQMQ----KIVRVTWSNPPAQGARIVARTLSD 312 (412)
T ss_dssp HHHHHHTTCCEEEEEECTTT-SCCGGGCEEEEEEECSSHHH-H-HHHHHHHH----HHHHTTTSSCCSHHHHHHHHHHHS
T ss_pred hhhhhhhccccccccccccc-ccCCCCCccccccchhHHHH-H-HHHHHHHH----HHhhccccccchHHHHHHHHHhcC
Confidence 11111345677788886 66666 7888888766654 1 00000000 00000011222222222222221
Q ss_pred --HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcce
Q 012991 312 --FVSRFEGGIDGIMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGV 386 (452)
Q Consensus 312 --~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 386 (452)
...++..-++.++++++++++.+.+.|.+... +..+.++. +.|.|. +.+.+ .++.|.+++||
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~--G~F~~~----------~ls~~-~v~~L~~e~gV 379 (412)
T d1ajsa_ 313 PELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQI--GMFSFT----------GLNPK-QVEYLINQKHI 379 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCC--SSEEEC----------CCCHH-HHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCC--eEEEec----------CCCHH-HHHHHHHhCCE
Confidence 11111113566778888888999999987632 11122222 445443 23443 44556677899
Q ss_pred EeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 387 EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++.+ + .||+++. .++++|++++++|++++++
T Consensus 380 ~~vp-----------------------g-~Ri~~ag-~~~~~i~~~a~aI~~av~~ 410 (412)
T d1ajsa_ 380 YLLP-----------------------S-GRINMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp ECCT-----------------------T-SEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred EEeC-----------------------C-CeEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 8731 1 2999865 3678899999999998864
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.86 E-value=2.2e-21 Score=189.76 Aligned_cols=354 Identities=10% Similarity=0.005 Sum_probs=211.3
Q ss_pred HHHHhhhccC-CCCeEEeccCC----CC--CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC--
Q 012991 27 AEIRDEFSHH-QHGVARINNGS----FG--SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD-- 97 (452)
Q Consensus 27 ~~ir~~~~~~-~~~~~~l~~~~----~~--~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-- 97 (452)
-.+.++|... .+..|+|..|. .+ +.++.|.++.+.... .+.....|.+.++..++|+++++++.-..
T Consensus 17 ~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~----~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~ 92 (412)
T d1yaaa_ 17 FGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHN----DSSYNHEYLGITGLPSLTSNAAKIIFGTQSD 92 (412)
T ss_dssp HHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHT----CTTCCCCCCCTTCCHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHh----CcccCCCCCCCCCCHHHHHHHHHHHhcccCc
Confidence 3566777643 24478998773 22 445778877654432 22222346667778899999998763211
Q ss_pred ---CCcEE--EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 98 ---VGEIS--LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 98 ---~~~i~--~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
.+.++ .+.+++.++..++..+. ...+||.|++++|.|+.....+ ...|.+++.+++.. ++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~gd~Vlip~P~~~~y~~~~----~~~g~~~~~~~~~~--~~~~~ 160 (412)
T d1yaaa_ 93 ALQEDRVISVQSLSGTGALHISAKFFS------KFFPDKLVYLSKPTWANHMAIF----ENQGLKTATYPYWA--NETKS 160 (412)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHHH------HHCTTCCEEEEESCCTTHHHHH----HTTTCCEEEEECEE--TTTTE
T ss_pred cccccceeEEecccchhHHHHHHHHHh------ccCCCCEEecccccCchhHHHH----HHcCCceecccccc--ccccc
Confidence 22222 23444544444433221 2578999999999999865554 55699999997531 11111
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc-----------
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI----------- 237 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~----------- 237 (452)
. .+.+++.+... +++++++++++|+||||.+++ +++|+++|+++++ +++.|+++..-...-
T Consensus 161 ~~~~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~-~ii~De~Y~~l~~~~~~~~~~~~~~~ 236 (412)
T d1yaaa_ 161 LDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNH-IALFDTAYQGFATGDLDKDAYAVRLG 236 (412)
T ss_dssp ECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTTSSSCHHHHTHHHHHH
T ss_pred ccchhhhcccccC---CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCE-EEeecceeeecccCCcccchhhhhhh
Confidence 2 45555555432 567889999999999999997 6678999999999 799999986433210
Q ss_pred --cccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceec-cCCCCcccccccccccCccccccHHHHHHH
Q 012991 238 --DVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSH-EFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 238 --~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
.......-+++.|++|. ++.+| +|++++.++.+.. + ...... .......... ....++...+..+..++..
T Consensus 237 ~~~~~~~~~~i~~~s~SK~-~~~~G~RiG~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~ 312 (412)
T d1yaaa_ 237 VEKLSTVSPVFVCQSFAKN-AGMYGERVGCFHLALTKQAQ-N-KTIKPAVTSQLAKIIRS-EVSNPPAYGAKIVAKLLET 312 (412)
T ss_dssp HHHTTTTCCEEEEEECTTT-SCCGGGCEEEEEEECCSCTT-H-HHHHHHHHHHHHHHHHT-TTSSCCHHHHHHHHHHHHS
T ss_pred hhccccCCCeEEEEecCCc-cccCcCceEEEEEchhhhhh-H-HHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHhcC
Confidence 01111234778899996 77777 8999999887764 1 000000 0000000000 0112222222222222221
Q ss_pred ---HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcce
Q 012991 313 ---VSRFEGGIDGIMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGV 386 (452)
Q Consensus 313 ---~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 386 (452)
...+..-++.+++++++.++.+.+.|.+... +....+++ +.|+|.. .+. ++++.|.+++||
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~g--G~F~~~~----------ls~-e~~~~L~~e~~V 379 (412)
T d1yaaa_ 313 PELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQC--GMFSFTG----------LTP-QMVKRLEETHAV 379 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCC--SSEEECC----------CCH-HHHHHHHHHHCE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCc--eEEEecC----------cCH-HHHHHHHHhCCE
Confidence 1111113577788888999999999988732 22222222 4555532 333 456777777899
Q ss_pred EeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 387 EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++.. ..|||++. .+.+.|+++.++|+++++.
T Consensus 380 ~~~~------------------------g~Ris~~g-~~~~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 380 YLVA------------------------SGRASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp ECCT------------------------TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred EECC------------------------CCEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 8741 23999865 3567899999999998875
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.86 E-value=9.9e-22 Score=184.62 Aligned_cols=346 Identities=16% Similarity=0.164 Sum_probs=236.0
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCchh-hh--hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPDDF-YF--NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~~~-~~--~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
+..+.|- ++-...++.|++++...+..-+. +|+.. |. ...+++...+.++..++|+++ ..-+-..||+.|+.
T Consensus 23 ~~~l~Li-aSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~--~anVqp~SGs~An~ 99 (405)
T d1kl1a_ 23 HAKIELI-ASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE--HANVQPHSGAQANM 99 (405)
T ss_dssp HHSEECC-TTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCS--EEECCCSSHHHHHH
T ss_pred HcCceEe-ccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCC--cceeeccCchHHHH
Confidence 4556664 44566777799998877654222 23221 21 234556666788999999995 33355678999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCc---chhHHHHHHHHHHhcCcEEEEEeCCCCCCC-hHHH-HHHHHHHHhccccC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCA---FQAVKKSIQAYVTRAGGSVVEVQLPFPLAS-EEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~---~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~-~~~~-~~~l~~~i~~~~~~ 187 (452)
.++.+| ++|||+|+..+.. |-++...... .....++..++ .+. .+.+ ++++++.+++
T Consensus 100 av~~al--------l~pGD~im~l~l~~GGHlshg~~~~~--~g~~~~~~~y~----~d~~~~~ID~d~l~~~a~~---- 161 (405)
T d1kl1a_ 100 AVYFTV--------LEHGDTVLGMNLSHGGHLTHGSPVNF--SGVQYNFVAYG----VDPETHVIDYDDVREKARL---- 161 (405)
T ss_dssp HHHHHH--------CCTTCEEEEECGGGTCCGGGTCTTSH--HHHHSEEEEEC----BCTTTCSBCHHHHHHHHHH----
T ss_pred HHHHHh--------cCCCCEEEEeecccccccccCccccc--cceEEEEEEec----cchhcccccHHHHHHHHHh----
Confidence 999988 6999999987654 4333222221 11235666663 332 3345 8999999874
Q ss_pred CCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCCCcE
Q 012991 188 GKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
.+|++|++..-. .-..+|++++.++|++.|+ ++++|.+|-.|.+ +-.+. .+|++++|.||+|.||.| |
T Consensus 162 -~kPklIi~G~S~--y~r~~d~~~~reIad~vga-~l~~D~aH~~GLIa~g~~~~P~~--~aDvvt~tThKtlrGPrg-g 234 (405)
T d1kl1a_ 162 -HRPKLIVAAASA--YPRIIDFAKFREIADEVGA-YLMVDMAHIAGLVAAGLHPNPVP--YAHFVTTTTHKTLRGPRG-G 234 (405)
T ss_dssp -HCCSEEEECCSS--CCSCCCHHHHHHHHHHHTC-EEEEECTTTHHHHHTTSSCCSTT--TCSEEEEESSSTTCCCSC-E
T ss_pred -hCcceEEecccc--cccccChHHHHHHHhhhCC-EEecchhhHhhhhhhhhcCChhh--hhhheeccccccccCCCC-c
Confidence 689999996544 4567899999999999999 8999999976543 33332 489999999999999998 8
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
+++.+++...+ +.... |++ ..|.|....+.+...++..+.+- .++.+.+++.++++.|.+.|.+.
T Consensus 235 ~I~~~~~~~~~-i~~av----fPg-------~qggp~~~~iAa~Aval~Ea~~~--~fk~Ya~qvv~NAkaLa~~L~~~- 299 (405)
T d1kl1a_ 235 MILCQEQFAKQ-IDKAI----FPG-------IQGGPLMHVIAAKAVAFGEALQD--DFKAYAKRVVDNAKRLASALQNE- 299 (405)
T ss_dssp EEEECHHHHHH-HHHHH----TTT-------TCSSCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEecchhHHH-HHhhh----Ccc-------cccCcchhHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHhcC-
Confidence 99888766554 21111 111 11555566667776666654432 57888999999999999999987
Q ss_pred CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 343 GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
|+.+.... ...+++++.+.. .+.+..+..+.|.+ .||.+..-..|.... ....+..|||+...
T Consensus 300 G~~vv~gg-Td~H~vlvdl~~-----~~~~g~~ae~~Le~-agI~~Nkn~iP~d~~----------~~~~~SGiRiGT~a 362 (405)
T d1kl1a_ 300 GFTLVSGG-TDNHLLLVDLRP-----QQLTGKTAEKVLDE-VGITVNKNTIPYDPE----------SPFVTSGIRIGTAA 362 (405)
T ss_dssp TCEEGGGS-CSSSEEEEECGG-----GTCCHHHHHHHHHH-HTEECEECCCTTCSS----------CTTTCSEEEEECHH
T ss_pred CceeecCC-Cccceeeccccc-----cCCcHHHHHHHHHH-cCeEEcCCcCCCCCC----------CCCCCCceeecCHH
Confidence 88876432 336788887742 24566666677754 599885433322100 02345789999876
Q ss_pred cC----CHHHHHHHHHHHHHHHhcc
Q 012991 423 YN----TLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 423 ~~----t~~di~~l~~~l~~~~~~~ 443 (452)
.+ +++|+.++.+.|.++++..
T Consensus 363 ~TtrG~~e~dm~~ia~~I~~~l~~~ 387 (405)
T d1kl1a_ 363 VTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHhcC
Confidence 54 4799999999999999654
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.2e-22 Score=193.39 Aligned_cols=345 Identities=10% Similarity=0.074 Sum_probs=201.9
Q ss_pred HHhhhccC-CCCeEEeccCC----CC--CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----
Q 012991 29 IRDEFSHH-QHGVARINNGS----FG--SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD----- 96 (452)
Q Consensus 29 ir~~~~~~-~~~~~~l~~~~----~~--~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----- 96 (452)
+.++|... ....|+|..|. .+ +.++.|.++..... ..+.....|.+..+..++|+++++++.-.
T Consensus 16 ~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~----~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~ 91 (397)
T d3tata_ 16 LMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLN----AQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVL 91 (397)
T ss_dssp HHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHT----TSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHH----hCcccCCCCCCcccCHHHHHHHHHHHhhccCCcC
Confidence 44445432 24568888773 22 34566777765432 23333345777888999999999987643
Q ss_pred CCCcEEEecChhHH----HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 97 DVGEISLVDNATTA----AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 97 ~~~~i~~t~g~t~a----~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
+.+.++.+.+++.+ +.+++.++ +.+||+|++++|.|++....+ ...|.+++.+++.. +....
T Consensus 92 ~~~~i~~~~~~~~~~~~~l~~~~~~~--------~~pgd~Vlv~~P~y~~y~~~~----~~~G~~~~~v~~~~--~~~~~ 157 (397)
T d3tata_ 92 KQQRVATIQTLGGSGALKVGADFLKR--------YFPESGVWVSDPTWENHVAIF----AGAGFEVSTYPWYD--EATNG 157 (397)
T ss_dssp HTTCEEECCBSHHHHHHHHHHHHHHH--------HCSSCCCEECSSCCTTHHHHH----HTTTCCCEECCCCC--TTTSS
T ss_pred CcCcEEEecCchhHHHHHHHHHHhhh--------cCCCCcceecccCccccHHHH----HHcCCEEEEEecch--hhccc
Confidence 24667766655543 33333333 589999999999999976665 44699999986531 11112
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCcccc---------c
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSIKID---------V 239 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~~~~---------~ 239 (452)
. .+.+.+.+... .++++++++++++||||.+++. ++|+++|+++++ +++.|++++......+ .
T Consensus 158 ~~~~~~~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~-~ii~De~Y~~l~~~~~~~~~~~~~~~ 233 (397)
T d3tata_ 158 VRFNDLLATLKTL---PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAREL-IPFLDIAYQGFGAGMEEDAYAIRAIA 233 (397)
T ss_dssp CCHHHHHHHHTTC---CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTC-CCEECBSCTTSSSCHHHHHHHHHHHH
T ss_pred cchHHHHHHhhhc---ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCe-eEEeehhhhhhccCCcccchhhhhhh
Confidence 2 45555555432 5678899999999999999974 578899999999 7999999875432110 1
Q ss_pred cccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH---HHH
Q 012991 240 KEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT---FVS 314 (452)
Q Consensus 240 ~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~ 314 (452)
.....-+++.|++|. ++++| +|++.+....+.. ......... ........+++...+.++...+. +..
T Consensus 234 ~~~~~~i~~~s~SK~-~~~~G~RiG~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 306 (397)
T d3tata_ 234 SAGLPALVSNSFSKI-FSLYGERVGGLSVMCEDAEA--AGRVLGQLK----ATVRRNYSSPPNFGAQVVAAVLNDEALKA 306 (397)
T ss_dssp TTTCCCEECBCCHHH-HTBTTTCCBCCEEECSSTTH--HHHHHHHHH----HHTTTTTSSCCSHHHHHHHHHHHSHHHHH
T ss_pred hcCCceEEEecCccc-ccccCccccccccchhHHHH--HHHHHHHHH----HHhhcccccccHHHHHHHHHhcCCHHHHH
Confidence 111224677899996 66666 7998888777654 000000000 00000011222222222222221 111
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHc-C--CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 315 RFEGGIDGIMQRNHEQALKMARMLANAW-G--TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
.+....+.++++++++++.+.+.|.... . +.+..++ .+.|+|+.+ + .+.++.|.+++||++..
T Consensus 307 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~--~G~F~~~~l----------s-~e~~~~L~~e~~V~l~~- 372 (397)
T d3tata_ 307 SWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQ--RGMFSYTGL----------S-AAQVDRLREEFGVYLIA- 372 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHC--CSSBCCCCC----------C-HHHHHHHTTTTCEECCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCC--CceEEecCc----------C-HHHHHHHHHhCCEEeCC-
Confidence 1101234445555555555555554431 1 2222222 255666544 2 24567777788998741
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..|||++. .++++|+++.++|++++
T Consensus 373 -----------------------g~Ri~~a~-~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 373 -----------------------SGRMCVAG-LNTANVQRVAKAFAAVM 397 (397)
T ss_dssp -----------------------SSCCBTTS-CCTTTHHHHHHHHHHHC
T ss_pred -----------------------CCEEEecc-CCHHHHHHHHHHHHHhC
Confidence 13999865 36788999999998764
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.86 E-value=8.4e-20 Score=174.04 Aligned_cols=314 Identities=14% Similarity=0.129 Sum_probs=205.3
Q ss_pred hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH
Q 012991 72 DFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV 151 (452)
Q Consensus 72 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a 151 (452)
..|++...+..+.++++++++.|. +..++++||.+|+..++.++ +++||+|++++..|......+..+.
T Consensus 59 ~~Y~R~~nPt~~~LE~~la~LEgg---~~a~~~sSGMaAi~~~l~~l--------~~~Gd~iv~~~~~Yg~t~~l~~~~~ 127 (398)
T d1qgna_ 59 FEYGRYGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLAL--------VPAGGHIVTTTDCYRKTRIFIETIL 127 (398)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHH--------SCSSCEEEEETTSCHHHHHHHHHTG
T ss_pred ceecCCCChHHHHHHHHHHHHhCC---ceEEEecCcchHHHHHHhhc--------ccccccccccccccchhhhhhcccc
Confidence 346776778899999999999988 47789999999999999887 5899999999999999888888777
Q ss_pred HhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccc
Q 012991 152 TRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 152 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
.+.|+++.+++ ..+. .+..++.+ .+++++|+++.|+||+..+.|+++|+++||++|+ +++||.+.+
T Consensus 128 ~~~gi~~~~~~----~~~~---~~~~~~~~------~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~-~~vVDnT~a 193 (398)
T d1qgna_ 128 PKMGITATVID----PADV---GALELALN------QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGA-LVCIDGTFA 193 (398)
T ss_dssp GGGTCEEEEEC----SSCH---HHHHHHHH------HSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTT
T ss_pred ccccccccccc----ccch---hhhhhhhc------cccceEEEccCccccccccchHHHHHHHHhhcCC-EEEecceee
Confidence 88899999984 2221 12233334 4799999999999999999999999999999999 899999876
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
.+.. .+.-.+|+|+++.|.+|++.|-.. .|.+..+++.... + ... ....| +..+.. .....
T Consensus 194 tP~~-~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~-~-~~~-~~~~G----------~~l~p~---~a~ll 256 (398)
T d1qgna_ 194 TPLN-QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSE-I-RNL-HHILG----------GALNPN---AAYLI 256 (398)
T ss_dssp CTTT-CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHH-H-HHH-HHHHC----------CCCCHH---HHHHH
T ss_pred cccc-CCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhh-h-hhh-cccCC----------CcCCHH---HHHHH
Confidence 5543 233345899999999998654322 4666666665554 1 111 00011 111111 11222
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHH
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDAL 374 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
++-++ .+.--.++..+++..+.+.|.+.+.++ |..|. ...++++.|.+.. +...+.
T Consensus 257 ~rgl~----TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g-----~~~~a~ 327 (398)
T d1qgna_ 257 IRGMK----TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG-----DLLTTA 327 (398)
T ss_dssp HHHGG----GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS-----CHHHHH
T ss_pred Hhcch----HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecC-----CHHHHH
Confidence 22222 345556778899999999999987763 44441 1237788887751 233456
Q ss_pred HHHHHHhhhcceEeeecccCC-----CCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 375 RLRGHLRVRFGVEVPIHYQAP-----KDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++++.|. -+.+.+..+.... ....+.... .+++.+..++.||+|++. ||++.+++.|++.++
T Consensus 328 ~f~~~L~-l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~ 396 (398)
T d1qgna_ 328 KFVDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALD 396 (398)
T ss_dssp HHHHHCS-SSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred HHHHcCC-cceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHh
Confidence 6777763 2333332211100 000000000 011225567899999985 455556666665543
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.3e-20 Score=183.15 Aligned_cols=349 Identities=11% Similarity=0.053 Sum_probs=206.7
Q ss_pred CHHHHHhhhccC-CCCeEEeccCC----C--CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC---
Q 012991 25 SEAEIRDEFSHH-QHGVARINNGS----F--GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN--- 94 (452)
Q Consensus 25 ~~~~ir~~~~~~-~~~~~~l~~~~----~--~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--- 94 (452)
.+-.+-+.|... .+..|+|..|. . .+.++.|.+++++..... .. ..|.+.++..++|+++++++.
T Consensus 12 ~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~----~~-~~Y~p~~G~~~lr~aia~~~~~~~ 86 (394)
T d2ay1a_ 12 KILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE----TT-KTYAGLSGEPEFQKAMGELILGDG 86 (394)
T ss_dssp SHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC----CC-CCCCCSSCCHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCC----CC-CCCCCCCCCHHHHHHHHHHHhccc
Confidence 344566667542 23578888873 2 255678999998876542 11 135556677888888888752
Q ss_pred -CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 95 -ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 95 -~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
.......++|+|++.+..+++..+. ...+||.|++++|.|+.....+.. .|.+++.+++.. +.....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~gd~V~~p~p~~~~y~~~~~~----~g~~~v~~~~~~--~~~~~~ 154 (394)
T d2ay1a_ 87 LKSETTATLATVGGTGALRQALELAR------MANPDLRVFVSDPTWPNHVSIMNF----MGLPVQTYRYFD--AETRGV 154 (394)
T ss_dssp CCGGGEEEEEEEHHHHHHHHHHHHHH------HHCTTCCEEEEESCCHHHHHHHHH----HTCCEEEEECEE--TTTTEE
T ss_pred cccccccceeccCchHHHHHHHHHhh------hcCCceEEEEecccccchHHHHHH----cCCEEEEecccc--hhcccc
Confidence 2112344566665555443333221 258999999999999987666544 599999887531 111111
Q ss_pred -HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc---------ccc
Q 012991 174 -INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVK 240 (452)
Q Consensus 174 -~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~ 240 (452)
.+.+++..... .++++++++++++||||..++ +++|+++|+++++ +++.|+++......- ...
T Consensus 155 ~~~~~~~~~~~~---~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~-~ii~De~Y~~l~~~~~~~~~~~~~~~~ 230 (394)
T d2ay1a_ 155 DFEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGA-LPLIDLAYQGFGDGLEEDAAGTRLIAS 230 (394)
T ss_dssp CHHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEECCTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHhhc---ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceE-EEEEeccchhhcccccccchhhhhhhh
Confidence 34444444322 567889999999999999998 5578999999999 799999986543211 011
Q ss_pred ccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH---HHHH
Q 012991 241 EIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT---FVSR 315 (452)
Q Consensus 241 ~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~~ 315 (452)
.....++..|++|. ++.+| +|++.+....... . ....... . ......+ ..++...+..+...+. +...
T Consensus 231 ~~~~~~~~~s~sk~-~~~~G~R~G~~~~~~~~~~~-~-~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 303 (394)
T d2ay1a_ 231 RIPEVLIAASCSKN-FGIYRERTGCLLALCADAAT-R-ELAQGAM-A--FLNRQTY-SFPPFHGAKIVSTVLTTPELRAD 303 (394)
T ss_dssp HCSSEEEEEECTTT-TTCGGGCEEEEEEECSSHHH-H-HHHHHHH-H--HHHHTTT-SSCCCHHHHHHHHHHHSHHHHHH
T ss_pred hccccccccccccc-ccCCcccccchhhchhHHHH-H-HHhhhhh-H--hhhcccc-cchhHHHHHHHHHhcCCHHHHHH
Confidence 11223566688886 55555 7888887776653 0 0000000 0 0000000 1111111111111111 1111
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecc
Q 012991 316 FEGGIDGIMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHY 392 (452)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~ 392 (452)
+...++.+++++.++++.+.+.|.++.+ +....+++ +.|.|+.+ +. +.++.|.+++||++..
T Consensus 304 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~--G~F~~~~l----------s~-~~~~~L~~~~~V~~~~-- 368 (394)
T d2ay1a_ 304 WMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHR--GMFSRLGA----------TP-EQVKRIKEEFGIYMVG-- 368 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCC--SSEEECCC----------CH-HHHHHHHHHHCEECCT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCc--eeEEecCc----------CH-HHHHHHHHhCCEEecC--
Confidence 1124667788888899999999988743 22222333 55666433 33 4567777778998741
Q ss_pred cCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 393 QAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
..|||++.. ++++|++++++|.++
T Consensus 369 ----------------------g~Ri~~a~l-~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 369 ----------------------DSRINIAGL-NDNTIPILARAIIEV 392 (394)
T ss_dssp ----------------------TCEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred ----------------------CCEEEecCC-CHHHHHHHHHHHHHh
Confidence 249998753 678899999999876
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=5.5e-20 Score=174.72 Aligned_cols=312 Identities=15% Similarity=0.152 Sum_probs=206.4
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.++++++++-|. +..+.++||-+|+..++.++ +++||+|++++..|.+....+.....+
T Consensus 44 Y~R~~nPt~~~le~~la~LEgg---~~a~~~sSGMaAi~~~l~~l--------~~~gd~vv~~~~~yg~t~~~~~~~~~~ 112 (384)
T d1cs1a_ 44 YSRRGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVF--------LKPGDLLVAPHDCYGGSYRLFDSLAKR 112 (384)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHHHHHHhCC---CceEEecChHHHHHHHHhhc--------ccccceecccccccchhhhhhhhhhcc
Confidence 5566677889999999999988 47788999999999999887 589999999999999988888887788
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|..+.+++ ..+ .+.+++++ .++|++|+++.|+||+..+.|+++|+++||++|+ +++||.+.+.+
T Consensus 113 ~g~~~~~~d----~~d----~~~~~~~~------~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~-~~vVDNT~atP 177 (384)
T d1cs1a_ 113 GCYRVLFVD----QGD----EQALRAAL------AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGA-VSVVDNTFLSP 177 (384)
T ss_dssp TSCEEEEEC----TTC----HHHHHHHH------HTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTTCT
T ss_pred ccccccccc----CCC----HHHHHhhc------cccccEEEEeccccccceeccHHHHhhhhhhcCc-EEEEeccccCc
Confidence 899998883 233 57788888 5899999999999999999999999999999999 89999987665
Q ss_pred CccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
.. ...-.+|+|+++.|.+|++.| .| .|+++.+++.....+ .......| +..+.. .....+
T Consensus 178 ~~-~~Pl~~GaDiVvhS~TKyi~G-hsdv~~G~vv~~~~~~~~~~--~~~~~~~G----------~~~~p~---~a~ll~ 240 (384)
T d1cs1a_ 178 AL-QNPLALGADLVLHSCTKYLNG-HSDVVAGVVIAKDPDVVTEL--AWWANNIG----------VTGGAF---DSYLLL 240 (384)
T ss_dssp TT-CCGGGGTCSEEEEETTTTTTC-SSCCCCEEEEESSHHHHHHH--HHHHHHHT----------CBCCHH---HHHHHH
T ss_pred cc-ccccccCCCEEEEcccccccc-CCCcccccccCCchhhhhhh--hhhhhhhh----------hccccc---cHHHHh
Confidence 43 222335899999999998544 44 566766554432201 00000011 111111 112222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
+-++ .+.--.++..+++..+.+.|++.+.+ +|..|. ...++++.|.+.. +...+..
T Consensus 241 rgL~----TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~-----~~~~a~~ 311 (384)
T d1cs1a_ 241 RGLR----TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-----DEQTLRR 311 (384)
T ss_dssp HHHT----THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----CHHHHHH
T ss_pred hccc----hhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc-----hHHHHHH
Confidence 3333 34555777889999999999988766 343331 1237788888751 2234556
Q ss_pred HHHHHhhhcceEeeecccC-----CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 376 LRGHLRVRFGVEVPIHYQA-----PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+.|. -+.+.+..+... +....+..... +++.+..++.||+|++. ||++.+++.|++.++.
T Consensus 312 f~~~L~-l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----Ed~eDLi~Dl~~AL~a 380 (384)
T d1cs1a_ 312 FLGGLS-LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFRA 380 (384)
T ss_dssp HHHTCS-SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred HHHhCC-cceeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHHH
Confidence 666663 233333222110 00000000000 11125567899999985 5555666666665544
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=6.2e-21 Score=185.65 Aligned_cols=337 Identities=13% Similarity=0.053 Sum_probs=202.4
Q ss_pred CCeEEeccCC------CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC-----CC--cEEEe
Q 012991 38 HGVARINNGS------FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD-----VG--EISLV 104 (452)
Q Consensus 38 ~~~~~l~~~~------~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~--~i~~t 104 (452)
++.|+|..|. ..+.++.|.+++.+..... .. ..|.+..+..++|+++++++.-.. ++ .++.+
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~----~~-~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~ 100 (396)
T d2q7wa1 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE----TT-KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQT 100 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC----CC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCC----CC-CCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeecc
Confidence 4568888772 1255678999888776542 11 135566778889999998763210 12 33456
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
.+++.+..+++..+. .+.+||.|++++|.|++....+ ...|.+++.++...+ +.... ...+++....
T Consensus 101 ~~~~~~~~l~~~~l~------~~~~gd~Vlvp~P~y~~y~~~~----~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 168 (396)
T d2q7wa1 101 PGGTGALRVAADFLA------KNTSVKRVWVSNPSWPNHKSVF----NSAGLEVREYAYYDA--ENHTLDFDALINSLNE 168 (396)
T ss_dssp SHHHHHHHHHHHHHH------HHSCCCEEEEEESCCTHHHHHH----HHTTCEEEEEECEET--TTTEECHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHh------hcccceEEEEecCCCccchHHH----HHcCCeeEecccccc--cccccccchHHHHHHH
Confidence 666666555554432 2589999999999999875554 456999999976321 11111 3444443332
Q ss_pred cccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCccc---------cccccCccEEEEcC
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEIGADFYVSNL 251 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~~~d~~~~s~ 251 (452)
. ..+++++++++|+||||.+++. ++|+++|++|++ ++|.|++++.....- ........+++.|+
T Consensus 169 ~---~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~-~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~ 244 (396)
T d2q7wa1 169 A---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGW-LPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSY 244 (396)
T ss_dssp C---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEEC
T ss_pred h---ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCe-EEEEeccccccccCCccCchHhhhhhhhcccccccccc
Confidence 2 5678999999999999999985 578899999999 799999987543211 01111334677788
Q ss_pred cccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH---HHHHhhcCHHHHHHH
Q 012991 252 HKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT---FVSRFEGGIDGIMQR 326 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~~g~~~~~~~ 326 (452)
+|. ++.+| +|++.+....++. . ........ .........++...+.++...+. ...++...++.++++
T Consensus 245 sk~-~~~~G~R~G~~~~~~~~~~~-~-~~~~~~~~----~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (396)
T d2q7wa1 245 SKN-FGLYNERVGACTLVAADSET-V-DRAFSQMK----AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQR 317 (396)
T ss_dssp TTT-TTCGGGCCEEEEEECSSHHH-H-HHHHHHHH----HHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CH
T ss_pred ccc-ccccCCCccccccchhHHHH-H-HHhhhhhh----hhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 996 66666 8999888776654 0 00000000 00000001222222222222211 001111135667778
Q ss_pred HHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 327 NHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
++++++.+.+.|.++.. +....+++ +.|.|+.+ +. +.++.|.+++||++..
T Consensus 318 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~--G~F~~~~l----------~~-e~~~~L~~e~gV~~~~------------- 371 (396)
T d2q7wa1 318 IQRMRQLFVNTLQEKGANRDFSFIIKQN--GMFSFSGL----------TK-EQVLRLREEFGVYAVA------------- 371 (396)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCTHHHHCC--SSEEECCC----------CH-HHHHHHHHHHCEECCT-------------
T ss_pred HHHHHHHHHHHHHHhCCCCCcceecCCC--eEEEeeCC----------CH-HHHHHHHHhCCEEECC-------------
Confidence 88889999999988732 22222332 55666433 33 4566776778998731
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
++ |||++.. ++++|++++++|++++
T Consensus 372 ---------g~--Ri~~a~l-~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 372 ---------SG--RVNVAGM-TPDNMAPLCEAIVAVL 396 (396)
T ss_dssp ---------TC--EEEGGGC-CTTTHHHHHHHHHHHC
T ss_pred ---------CC--EEEecCC-CHHHHHHHHHHHHHhC
Confidence 12 9998753 5778999999998864
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.4e-19 Score=173.47 Aligned_cols=327 Identities=15% Similarity=0.159 Sum_probs=207.9
Q ss_pred hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH
Q 012991 72 DFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV 151 (452)
Q Consensus 72 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a 151 (452)
..|++...+..+.++++|+++-+.. ..+.++||-+|+..++.++ +++||+|++++..|.+....+..+.
T Consensus 50 ~~YsR~~nPT~~~LE~~la~LE~~~---~a~~~~SGmaAi~~~~~~l--------~~~gd~il~~~~~Yg~t~~l~~~~~ 118 (421)
T d2ctza1 50 NIYSRIMNPTVDVLEKRLAALEGGK---AALATASGHAAQFLALTTL--------AQAGDNIVSTPNLYGGTFNQFKVTL 118 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEECSCCCHHHHHHHHTHH
T ss_pred ceecCCCCHHHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHhh--------cccccceeecCCcCCchhHHHHHHH
Confidence 3466666778899999999999884 6778888889999888887 6899999999999999988888878
Q ss_pred HhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccc
Q 012991 152 TRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 152 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
.+.|+++.+++. .+. .+..++.+ .++|++|+++.|+||+..+.|++.|+++||++|+ +++||.+.+
T Consensus 119 ~~~gi~~~~~d~----~~~---~~~~~~~~------~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~-~~vvDnT~a 184 (421)
T d2ctza1 119 KRLGIEVRFTSR----EER---PEEFLALT------DEKTRAWWVESIGNPALNIPDLEALAQAAREKGV-ALIVDNTFG 184 (421)
T ss_dssp HHTTCEEEECCT----TCC---HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTC-EEEEECGGG
T ss_pred hhccccceeccc----ccC---cchhcccc------CCCceEEEEcCCCcceeEecchHHHHHHHHhcCC-ceEeccccc
Confidence 899999998842 221 35555566 6899999999999999999999999999999999 899999876
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCcee-ccCCC---Ccc--------c-cc---
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVS-HEFGN---GLP--------I-ES--- 292 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~-~~~~~---~~~--------~-~~--- 292 (452)
.+..-...-.+|+|+++.|.+|+++| .| .|.++.+++........+... ...+. ... . +.
T Consensus 185 ~tP~~~~Pl~~GaDiVvhS~TKyl~G-HsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (421)
T d2ctza1 185 MGGYLLRPLAWGAALVTHSLTKWVGG-HGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVD 263 (421)
T ss_dssp GGGTSCCGGGGTCSEEEEETTTTTTC-SSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHT
T ss_pred ccceeccccccCCcEEEEechhhccC-CCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHH
Confidence 32222233345899999999998544 44 577777766554311111100 00000 000 0 00
Q ss_pred --ccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc---------------cccc
Q 012991 293 --AWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPP---------------EICA 354 (452)
Q Consensus 293 --~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~---------------~~~~ 354 (452)
...|.... + ......++-++ .+.--.++..+++..+.+.|.+.+.+ +|..|. ...+
T Consensus 264 ~~~~~G~~~s-P-~~a~l~~rgl~----TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G 337 (421)
T d2ctza1 264 GLRDQGQALG-P-FEAWVVLLGME----TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPG 337 (421)
T ss_dssp HHHHHCCCCC-H-HHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCC
T ss_pred HHHhccCCCC-H-HHHHHHhcCCc----chhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCc
Confidence 00111111 0 01112222222 45556777889999999999998776 454441 1236
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC-----CCCCCCCCCC--CCCCCCCccceEEecccccCCHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-----PKDDGQPQAG--ARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
+++.|.+.. +...+..+.+.|. -+.+.+..+... +....+.... .+...+..++.||+|++. |
T Consensus 338 ~~~sf~l~~-----~~~~a~~f~~~L~-l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSvGl----E 407 (421)
T d2ctza1 338 AVLTFGLKG-----GYEAAKRFISRLK-LISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----E 407 (421)
T ss_dssp SEEEEEETT-----HHHHHHHHHHTCS-SSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----S
T ss_pred eEEEEEecC-----CHHHHHHHHHcCC-cCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEecc----C
Confidence 788888851 1223455666663 233333222110 0000000000 001124567899999984 5
Q ss_pred HHHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILLV 440 (452)
Q Consensus 428 di~~l~~~l~~~~ 440 (452)
|++.+++.|++.+
T Consensus 408 d~eDLi~DL~qAL 420 (421)
T d2ctza1 408 HVEDLKAELKEAL 420 (421)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhc
Confidence 5666777776653
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.85 E-value=1.7e-20 Score=179.06 Aligned_cols=363 Identities=16% Similarity=0.130 Sum_probs=227.5
Q ss_pred HHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPDD-FYF--NSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 27 ~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
+.|.++... ++..+.|- ++-...++.|++++...+..-++ .|.. +|. ...+++...+.++..++|+++ ...+
T Consensus 17 ~~i~~e~~r-q~~~l~Li-aSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~-~a~w 93 (463)
T d2a7va1 17 ELLQREKDR-QCRGLELI-ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD-PAQW 93 (463)
T ss_dssp HHHHHHHHH-HHHSEECC-TTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC-TTTE
T ss_pred HHHHHHHHH-HhcCeeEe-ccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCC-chhc
Confidence 344444432 24455654 45667888899998777654222 2222 221 234566677889999999996 4432
Q ss_pred ---EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHH---H-HHHhcCcEEEEEeCCCCCC-ChHHH
Q 012991 102 ---SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQ---A-YVTRAGGSVVEVQLPFPLA-SEEEI 173 (452)
Q Consensus 102 ---~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~---~-~a~~~g~~v~~~~~~~~~~-~~~~~ 173 (452)
+-..||+.|+..++.+| ++|||+|+..+..+.++...-. . -....|.-+..++. +.+ +.+.+
T Consensus 94 ~vNVqp~SGs~An~av~~al--------l~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y--~~d~~~~~I 163 (463)
T d2a7va1 94 GVNVQPYSGSPANLAVYTAL--------LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY--KLNPKTGLI 163 (463)
T ss_dssp EEECCCSSHHHHHHHHHHHH--------CCSCEECCC-------------------------------C--CBCTTTCSB
T ss_pred cCCccccccHHHHHHHHHHH--------cCCCceEEeeccCcCcccccccccccccccceeeEeeeeee--eccCCCCcC
Confidence 55678999999999988 6999999987665444321110 0 00112333333333 333 23445
Q ss_pred -HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEE
Q 012991 174 -INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFY 247 (452)
Q Consensus 174 -~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~ 247 (452)
++++++.+++ .+|++|++-.-. .-..+|++++.++|++.|+ ++++|.+|-.|.+ +-.+. .+|++
T Consensus 164 Dyd~~~~~a~~-----~kPklIi~G~S~--y~r~~d~~~~reIad~vga-~l~~D~aH~aGLIA~g~~~sP~~--~aDvv 233 (463)
T d2a7va1 164 DYNQLALTARL-----FRPRLIIAGTSA--YARLIDYARMREVCDEVKA-HLLADMAHISGLVAAKVIPSPFK--HADIV 233 (463)
T ss_dssp CHHHHHHHHHH-----HCCSEEEECCSS--CCSCCCHHHHHHHHHHTTC-EEEEECGGGHHHHHTTSSCCGGG--TCSEE
T ss_pred cHHHHHHHHhh-----cCCceEEecccc--cccccCHHHHHHHhhcccc-eEEechhhhhHHhhhhhhcChhh--hhhhh
Confidence 8999998874 689999996544 4567899999999999999 8999999976543 33332 47999
Q ss_pred EEcCcccCcCCCCcEEEEEecCcccc----------CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhh
Q 012991 248 VSNLHKWFFCPPSVAFLYCRKSILSS----------DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFE 317 (452)
Q Consensus 248 ~~s~~K~l~g~~G~G~l~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 317 (452)
++|.||+|.||.| |+++++++.... ++...+-..-|++ ..|.|....+++++.++..+.+-
T Consensus 234 t~tTHKTlrGPrg-GiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg-------~qggph~h~iAa~Ava~~ea~~~- 304 (463)
T d2a7va1 234 TTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS-------LQGGPHNHAIAAVAVALKQACTP- 304 (463)
T ss_dssp EEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTT-------TCCSCCHHHHHHHHHHHHHHHSH-
T ss_pred hchhhhhhcCCCc-eEEEEcccccccccccCccchhHHHHHhhhhcCcc-------cchhhhhhhHHHHHHHHHHhcCc-
Confidence 9999999999998 999998754221 0000000000111 12556666677777676665532
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCC
Q 012991 318 GGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397 (452)
Q Consensus 318 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~ 397 (452)
.++.+.+++.++++.|.+.|.+. |+.+.... ...+++++.+.. .+.+.....+.|.+ .||.+..-..+...
T Consensus 305 -~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~gg-TdnHlvlvdl~~-----~~~~G~~ae~~Le~-~gI~~Nkn~iP~D~ 375 (463)
T d2a7va1 305 -MFREYSLQVLKNARAMADALLER-GYSLVSGG-TDNHLVLVDLRP-----KGLDGARAERVLEL-VSITANKNTCPGDR 375 (463)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS-CSSSEEEEECTT-----TTCCHHHHHHHHHH-TTEECEEECCTTCC
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhC-CCeeecCC-CCCceeeeeccc-----cCCCHHHHHHHHHh-ccCccCCccCCCCC
Confidence 57889999999999999999987 88876432 336788887741 24577777778854 69998654333211
Q ss_pred CCCCCCCCCCCCCCccceEEecccccC----CHHHHHHHHHHHHHHHh
Q 012991 398 DGQPQAGARDKDGIITGYARISHQVYN----TLEDYEKFRDAVILLVE 441 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~iRis~~~~~----t~~di~~l~~~l~~~~~ 441 (452)
. ...++.|||+....+ .++|+.++.+.|.+++.
T Consensus 376 ~-----------~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 376 S-----------AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp C-----------SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred C-----------CCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 0 244678999987655 46899999999988775
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.84 E-value=7.4e-19 Score=169.75 Aligned_cols=325 Identities=15% Similarity=0.143 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 80 KGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
+..+++++.+++++|.+ .++.+++||.|+.+++.++ .+++||+|+++..+|.+...++.. .|.+++
T Consensus 34 ~~v~~fE~~~a~~~g~~---~~v~~~SGt~Al~lal~~l-------~~~~gdeVi~p~~t~~a~~~ai~~----~g~~p~ 99 (384)
T d1b9ha_ 34 DEVNSFEREFAAHHGAA---HALAVTNGTHALELALQVM-------GVGPGTEVIVPAFTFISSSQAAQR----LGAVTV 99 (384)
T ss_dssp SHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHT-------TCCTTCEEEEESSSCTHHHHHHHH----TTCEEE
T ss_pred HHHHHHHHHHHHHHCcC---eEEEeCCHHHHHHHHHHHc-------CCCCCCEEEEeccccccccccccc----cccccc
Confidence 35788999999999995 7899999999999999987 368999999999999998777644 599999
Q ss_pred EEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc
Q 012991 160 EVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID 238 (452)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~ 238 (452)
.++... ....+ ++.+++.+ ++++++|+++|. .|...++++|.++|+++++ ++|.|++|+.|...-.
T Consensus 100 ~~d~~~---~~~~~d~~~~~~~i------~~~tk~i~~~~~---~g~~~d~~~i~~~~~~~~i-~lieD~a~a~ga~~~g 166 (384)
T d1b9ha_ 100 PVDVDA---ATYNLDPEAVAAAV------TPRTKVIMPVHM---AGLMADMDALAKISADTGV-PLLQDAAHAHGARWQG 166 (384)
T ss_dssp EECBCT---TTCCBCHHHHHHHC------CTTEEEECCBCG---GGCCCCHHHHHHHHHHHTC-CBCEECTTCTTCEETT
T ss_pred cccccc---cccccchhhhcccc------cccccccccccc---cccccccccchhhhhhhhh-hhhhhhceecccccCC
Confidence 985421 12334 88999988 789999987654 5889999999999999999 7999999999885322
Q ss_pred --cccc-CccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcc---cccccccccCccccccHHHHHHH
Q 012991 239 --VKEI-GADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLP---IESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 239 --~~~~-~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
.... +..+++++.+|.+.++.| |+++++++.+.. ....+..+..+.... ......|...-..-+.+..++..
T Consensus 167 ~~~g~~g~~~~~Sf~~~K~i~~g~G-G~i~t~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~q 244 (384)
T d1b9ha_ 167 KRVGELDSIATFSFQNGKLMTAGEG-GAVVFPDGETEK-YETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ 244 (384)
T ss_dssp EEGGGSSSCEEEECCTTSSSCSSSC-EEEEECTTCHHH-HHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH
T ss_pred EecCcccccceeccccccccccccc-chhhhhhHHHHH-HHHHHHhcCCCCccccccccccccccccccccchhhhhhhh
Confidence 1111 234455667898766666 777777554433 011111111110000 00001121111111111223333
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc----ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEe
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP----EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEV 388 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v 388 (452)
+. .++...++.+++.+++.+.|..++++...... .....+..|.++.. ...+.+++.+.|.++ ||..
T Consensus 245 L~----~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Rd~l~~~L~~~-GI~~ 315 (384)
T d1b9ha_ 245 LA----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL----TEERRNALVDRLVEA-GLPA 315 (384)
T ss_dssp HT----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC----CHHHHHHHHHHHHHT-TCCE
T ss_pred hh----hcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccc----ccccHHHHHHHHHHC-CCCe
Confidence 33 46777777788899999999887665322211 12233445555411 122345799999764 9998
Q ss_pred eecccCCCC-------CCCCCCCCC--C----CCCCccceEEecccccCC-HHHHHHHHHHHHHHHhc
Q 012991 389 PIHYQAPKD-------DGQPQAGAR--D----KDGIITGYARISHQVYNT-LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 389 ~~~~~~~~~-------~~~~~~~~~--~----~~~~~~~~iRis~~~~~t-~~di~~l~~~l~~~~~~ 442 (452)
+.++.+.+. |........ . +.......+.+.++...| ++|+++.++.|+++++.
T Consensus 316 ~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 316 FAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp EECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred eeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 766543210 000000000 0 001123458888777666 67999999999999865
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.83 E-value=1.9e-20 Score=182.01 Aligned_cols=295 Identities=9% Similarity=-0.013 Sum_probs=182.3
Q ss_pred HHHHHHHHhHh---C-C-CCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE
Q 012991 83 LESRAAVKDLI---N-A-DDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS 157 (452)
Q Consensus 83 ~~~~~~la~~~---~-~-~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~ 157 (452)
.++++.|++++ | + .+..+|++++|+|+++.+++.+|...-......||++||++.|.|+.+.... +..+.+
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~----~~~~~~ 178 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT----KYFDKK 178 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH----HHSCBT
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHH----HHcCCC
Confidence 45666666655 3 2 1245799999999999999999853222122578999999999998864443 334554
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc
Q 012991 158 VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI 237 (452)
Q Consensus 158 v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~ 237 (452)
...++. | .+.+++++ +++++++++++|+||||.+.. +-.+++ .+|+|+++.......
T Consensus 179 ~~~~~~----D-----~~~~~~~~------~~~~~ii~l~sPnNPtG~l~~-------~v~~~~-~~I~DEaY~~~~f~~ 235 (425)
T d2hoxa1 179 GYVWAG----N-----AANYVNVS------NPEQYIEMVTSPNNPEGLLRH-------AVIKGC-KSIYDMVYYWPHYTP 235 (425)
T ss_dssp TEEEEE----E-----GGGGTTCS------CGGGEEEEEESSCTTTCCCCC-------CSSTTC-EEEEECTTCSTTTSC
T ss_pred CCccCC----C-----HHHHHhhC------CCCceEEEEECCCCCCcchhh-------hhhhCC-EEEEeccccCccccc
Confidence 444422 2 34555555 678999999999999998742 122588 799999986443211
Q ss_pred cccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHH
Q 012991 238 DVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR 315 (452)
Q Consensus 238 ~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 315 (452)
-.....-++++.|++|. +|.+| +|+++++++.+.. .+..+ ........+...+.+...+++....
T Consensus 236 ~~~~~~~~Ivl~S~SK~-fglaGlRiGw~i~~~~~i~~-~~~~~-----------~~~~~~~vs~~~Q~aa~~aL~~~~~ 302 (425)
T d2hoxa1 236 IKYKADEDILLFTMSKF-TGHSGSRFGWALIKDESVYN-NLLNY-----------MTKNTEGTPRETQLRSLKVLKEVVA 302 (425)
T ss_dssp CCSCBCCSEEEEEHHHH-TSCGGGCCEEEEECCHHHHH-HHHHH-----------HHHHTSSCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCeEEEEeCHHh-ccCcchheeeEEeCCHHHHH-HHHHh-----------hccCcccCCHHHHHHHHHHhhccHH
Confidence 11222457899999995 88888 8988887654432 01111 0011122333333343334432211
Q ss_pred ----h----hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc------------cccceEEEEcCCccccCChhhHHH
Q 012991 316 ----F----EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE------------ICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 316 ----~----~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
. .+-++..++++++.++.+.+.|.+...+.+...+. ..+.+.|++.. ..+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~-------~~~~~~ 375 (425)
T d2hoxa1 303 MVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE-------WEEDKD 375 (425)
T ss_dssp HHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEEC-------SGGGCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCC-------CChHHH
Confidence 0 01244556667777888888887764433322111 11345666553 112223
Q ss_pred HHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 376 LRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+.|. ++||.++++..+. ..++++|||+.. +++++++++++|+++++.
T Consensus 376 ~~~lL~-e~gI~v~pGs~FG---------------~~~~yvRisl~~--~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 376 CYQTFQ-NGRINTQNGVGFE---------------ASSRYVRLSLIK--TQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp HHHHHH-HTTEECEEGGGGT---------------SCTTEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-hCCEEEEechhcC---------------CCCCEEEEEecC--CHHHHHHHHHHHHHHHhc
Confidence 445554 4699999887762 345799999874 788899999999999864
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=6.5e-19 Score=168.02 Aligned_cols=312 Identities=14% Similarity=0.143 Sum_probs=203.4
Q ss_pred hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHH
Q 012991 73 FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT 152 (452)
Q Consensus 73 ~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~ 152 (452)
.|++...+..+.++++++++-|. +..+.++||-+|+..++.++ +++||+|+++..-|.+....+.....
T Consensus 51 ~Y~R~~nPt~~~le~~la~LEg~---~~a~~~~SGMaAi~~~l~~l--------~~~Gd~iv~~~~~Yg~T~~l~~~~l~ 119 (391)
T d1cl1a_ 51 FYGRRGTLTHFSLQQAMCELEGG---AGCVLFPCGAAAVANSILAF--------IEQGDHVLMTNTAYEPSQDFCSKILS 119 (391)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH--------CCTTCEEEEETTSCHHHHHHHHHTGG
T ss_pred EeECCCChhHHHHHHHHHHHhCC---ccEEEeccccceeeehhhcc--------cCCCCeEEEecccccchhhhhhhccc
Confidence 46666778889999999999988 47788999999999998887 58999999999999999888887778
Q ss_pred hcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc--CCCEEEEeccc
Q 012991 153 RAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAH 230 (452)
Q Consensus 153 ~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~ 230 (452)
+.|+++..++ ..+ .+.+++++ .+++++|+++.++||+..+.|++.|+++|+++ |+ +++||.+.
T Consensus 120 ~~Gi~~~~~d----~~d----~~~~~~~i------~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~-~~vVDnT~ 184 (391)
T d1cl1a_ 120 KLGVTTSWFD----PLI----GADIVKHL------QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDA-IIMIDNTW 184 (391)
T ss_dssp GGTCEEEEEC----TTC----GGGGGGTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTC-EEEEECTT
T ss_pred cccccccccc----Ccc----cccccccc------ccccceeeecccCcccccccccHHHHHHHHhccCCc-EEEEeccc
Confidence 8899999994 222 46677777 68899999999999999999999999999775 99 89999988
Q ss_pred ccCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 231 AMGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 231 ~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
+.+.. .+.-.+|+|+++.|.+|++.|-.. .|.++.+++...+ + ... ....| +..+.. ....
T Consensus 185 atP~~-~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~-~-~~~-~~~~G----------~~~~p~---~a~l 247 (391)
T d1cl1a_ 185 AAGVL-FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQ-L-REN-AYLMG----------QMVDAD---TAYI 247 (391)
T ss_dssp TTTTS-SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHH-H-HHH-HHHTT----------CCCCHH---HHHH
T ss_pred cchhh-hcccccccceEEeecchhccccccccccceecccccccc-c-hhh-hhccc----------ccCCch---hhhh
Confidence 66543 222335899999999998655222 4677776665554 1 000 00011 111111 1111
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhH
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDA 373 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 373 (452)
.++-++ .+..-.++..+++..+.+.|++.+.++ |..|. ...++++.|.+. ...+.
T Consensus 248 l~rgl~----TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~------~~~~~ 317 (391)
T d1cl1a_ 248 TSRGLR----TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK------KKLNN 317 (391)
T ss_dssp HHHHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES------SCCCH
T ss_pred hhccch----hHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeec------CCCCH
Confidence 222222 455557778889999999999887663 43331 123567778775 22343
Q ss_pred HHHHHHHhh--hcceEeeecccCC-----CCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 374 LRLRGHLRV--RFGVEVPIHYQAP-----KDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 374 ~~l~~~L~~--~~gI~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+++...+.. -+.+.+..+.... ....+......+..+..++.||+|++. ||++.+++.|++.++
T Consensus 318 e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~ 388 (391)
T d1cl1a_ 318 EELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFA 388 (391)
T ss_dssp HHHHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHH
Confidence 444444421 1222222111000 000000000112225567899999985 455556665555543
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.83 E-value=2.3e-19 Score=171.87 Aligned_cols=359 Identities=13% Similarity=0.085 Sum_probs=236.4
Q ss_pred HHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCc-
Q 012991 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPDD-FYF--NSLRKGILESRAAVKDLINADDVGE- 100 (452)
Q Consensus 27 ~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~- 100 (452)
+.|.++... ++..+.|- ++-...++.|++++...+..-+. .|.. +|. ...+++...+.++..++|+++ ++.
T Consensus 21 ~~i~~e~~r-q~~~l~LI-aSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~-~~~~ 97 (470)
T d1rv3a_ 21 DIIKKESNR-QRVGLELI-ASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLD-PQCW 97 (470)
T ss_dssp HHHHHHHHH-HHSSEECC-TTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCC-TTTE
T ss_pred HHHHHHHHH-HHcCceEe-cCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCC-hhhc
Confidence 444444432 34556665 45667888899998877654222 2222 221 344566667788889999995 332
Q ss_pred -E-EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcch---hHHH-----HHHHHHHhcCcEEEEEeCCCCCCC-
Q 012991 101 -I-SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQ---AVKK-----SIQAYVTRAGGSVVEVQLPFPLAS- 169 (452)
Q Consensus 101 -i-~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~---s~~~-----~~~~~a~~~g~~v~~~~~~~~~~~- 169 (452)
+ +-..||+.|+..++.++ ++|||+|+..+..+. ++.. ... +.....+...++ .+.
T Consensus 98 ~anVqp~SGs~An~av~~al--------l~pgD~im~~~l~~GGHlshg~~~~~~~~~--~~~~~~~~~~y~----v~~~ 163 (470)
T d1rv3a_ 98 GVNVQPYSGSPANFAVYTAL--------VEPHGRIMGLDLPDGGHLTHGFMTDKKKIS--ATSIFFESMAYK----VNPD 163 (470)
T ss_dssp EEECCCSSHHHHHHHHHHHH--------TCTTCEEEEECGGGTCCGGGCCBCSSCBCS--HHHHHSEEEEEC----BCTT
T ss_pred cccccccCCccHHHHHHHHh--------cCCCCeEeeeccccCCcccccccccCCCcc--cccceeEeeEEE----Eecc
Confidence 2 44568999999999988 699999998755433 3210 000 011124566663 332
Q ss_pred hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccC
Q 012991 170 EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIG 243 (452)
Q Consensus 170 ~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~ 243 (452)
.+.+ ++++++..++ .+|++|++-.-. .-..+|++++.++|++.|+ ++++|.+|-.|.+ +-.+. .
T Consensus 164 ~~~IDyd~l~~~a~~-----~kPklIi~G~S~--y~r~~d~~~~reIad~vga-~l~~D~aH~aGLIA~g~~~sPl~--~ 233 (470)
T d1rv3a_ 164 TGYIDYDRLEENARL-----FHPKLIIAGTSC--YSRNLDYGRLRKIADENGA-YLMADMAHISGLVVAGVVPSPFE--H 233 (470)
T ss_dssp TCSBCHHHHHHHHHH-----HCCSEEEECCSS--CCSCCCHHHHHHHHHHTTC-EEEEECTTTHHHHHHTSSCCGGG--T
T ss_pred cCcccHHHHHHHHHh-----hCcceEeechhh--ccccCCHHHHHHHHhccCC-eEEecchhhhhhccccccCChhh--e
Confidence 2445 8999998874 689999996544 4567899999999999999 8999999976543 33332 4
Q ss_pred ccEEEEcCcccCcCCCCcEEEEEecCcccc------CCCCCce----eccCCCCcccccccccccCccccccHHHHHHHH
Q 012991 244 ADFYVSNLHKWFFCPPSVAFLYCRKSILSS------DMHHPVV----SHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV 313 (452)
Q Consensus 244 ~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~------~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 313 (452)
+|++++|.||+|.||.| |+++++++.... .+...+. ..-|++ ..|.|....+++++.++..+
T Consensus 234 aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg-------~qggph~~~IAa~Ava~~ea 305 (470)
T d1rv3a_ 234 CHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPG-------LQGGPHNHAIAGVAVALKQA 305 (470)
T ss_dssp CSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHHHHHHTTT-------TCCSCCHHHHHHHHHHHHHH
T ss_pred eeeeeeehhhhccCCcc-eEEEEccccccccccccchhHHHHHHHHhhhcCcc-------ccccchhhHHHHHHHHHHHh
Confidence 79999999999999998 999998764321 0000000 000111 12555666677776666665
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeeccc
Q 012991 314 SRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ 393 (452)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~ 393 (452)
.+- .++.+.+++.++++.|.+.|.+. |+.+.... ...+++++.+.. .+.+..+..+.|.+ .||.+..-..
T Consensus 306 ~~~--~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~gg-TdnHlvlvdl~~-----~g~~g~~ae~~Le~-~gI~~Nkn~i 375 (470)
T d1rv3a_ 306 MTP--EFKEYQRQVVANCRALSAALVEL-GYKIVTGG-SDNHLILVDLRS-----KGTDGGRAEKVLEA-CSIACNKNTC 375 (470)
T ss_dssp TSH--HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS-CSSSEEEEEGGG-----GTCCHHHHHHHHHH-TTEECEEECC
T ss_pred cCh--HHHHHHHHHHHHHHHHHHHHHhC-CceeccCC-CCCceEEEeecc-----cCCcHHHHHHHHHH-cCcEECCCcC
Confidence 432 46888999999999999999987 88876433 336788877641 25577777777754 6999854333
Q ss_pred CCCCCCCCCCCCCCCCCCccceEEecccccC----CHHHHHHHHHHHHHHHh
Q 012991 394 APKDDGQPQAGARDKDGIITGYARISHQVYN----TLEDYEKFRDAVILLVE 441 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~----t~~di~~l~~~l~~~~~ 441 (452)
+.... ...+..|||+....+ +++|+.++.+.|.++++
T Consensus 376 P~D~~-----------~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 376 PGDKS-----------ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp SSCSC-----------TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCC-----------CCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 32110 244678999987654 47999999999988875
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.82 E-value=1.8e-19 Score=168.58 Aligned_cols=302 Identities=15% Similarity=0.184 Sum_probs=197.4
Q ss_pred HHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeC
Q 012991 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQL 163 (452)
Q Consensus 84 ~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~ 163 (452)
.++++++++.|. +..+.++||.+|+..++.++ +++||+|++++.-|.+.+.-+..+..+.|+++.+++.
T Consensus 2 aLE~~la~Leg~---~~a~~~sSGMaAi~~~l~~l--------l~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~ 70 (331)
T d1pffa_ 2 ALEGKIAKLEHA---EACAATASGMGAIAASVWTF--------LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH--------CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred HHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecc
Confidence 367889999887 46788899999999888877 6999999999999999988888878899999999953
Q ss_pred CCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHH-HHcCCCEEEEecccccCCcccccccc
Q 012991 164 PFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKIC-RDEGVDQVFVDAAHAMGSIKIDVKEI 242 (452)
Q Consensus 164 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~-~~~~~~~~ivD~a~~~g~~~~~~~~~ 242 (452)
.+ .+.+++++ .+++++|+++.++||+..+.|++.+.+++ +++|+ +++||.+.+.+.. .+.-.+
T Consensus 71 ----~d----~~~~~~~i------~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~-~~vVDnT~atp~~-~~pl~~ 134 (331)
T d1pffa_ 71 ----AV----PGNIEKHL------KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDI-LVIVDNTFASPIL-TNPLDL 134 (331)
T ss_dssp ----TS----TTHHHHTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSC-EEEEECTTTHHHH-CCGGGG
T ss_pred ----cc----hhhHhhhc------ccccceeeeecccccccccccchhhhhhhhcccCc-eEEeecccccccc-cccccc
Confidence 32 47788888 68999999999999999999999999985 67899 8999988765432 222334
Q ss_pred CccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCH
Q 012991 243 GADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGI 320 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~ 320 (452)
|+|+++.|.+|++.|-.. .|.++.+++.........+ ....| ...+.. .....++-++. +
T Consensus 135 GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~-~~~~G----------~~l~p~---~a~ll~rgl~T----l 196 (331)
T d1pffa_ 135 GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGI-KDITG----------AIISPH---DAWLITRGTLT----L 196 (331)
T ss_dssp TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCC-CCCCC----------CCCCHH---HHHHHHHHHHH----H
T ss_pred CCCEEEecchhhcCCCCccccccccccccchhhhhhhhh-hhccC----------CCCCHH---HHHHHHHHHHH----H
Confidence 799999999998655222 5777777655433000000 00001 111111 12222333332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc--------------ccccceEEEEcCCccccCChhhHHHHHHHHhhhcc
Q 012991 321 DGIMQRNHEQALKMARMLANAWGT-SLGSPP--------------EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFG 385 (452)
Q Consensus 321 ~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 385 (452)
..-.++..+++..+.+.|.+.+.+ +|..|. ...++++.|.+. ...++.++++.|. -++
T Consensus 197 ~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~------~~~~~~~f~d~l~-lf~ 269 (331)
T d1pffa_ 197 DMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD------GLEKAKKVLDNCH-VVS 269 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS------SHHHHHHHHHTCS-SSE
T ss_pred HHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeec------cHHHHHHHHHhCC-cce
Confidence 444667788999999999998877 454441 124788888885 3445666777663 234
Q ss_pred eEeeecccCC-----CCCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 386 VEVPIHYQAP-----KDDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 386 I~v~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+.+..+.... ....+.... .++..+..++.+|+|++. ||.+.+++.|++.++
T Consensus 270 ~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl----E~~~DLi~Dl~~AL~ 328 (331)
T d1pffa_ 270 LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC----ENVQDIIDDLKQALD 328 (331)
T ss_dssp ECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred ecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee----CCHHHHHHHHHHHHH
Confidence 3332221100 000000000 011225667899999985 445555555555443
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.82 E-value=2.2e-18 Score=165.99 Aligned_cols=323 Identities=13% Similarity=0.066 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 80 KGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
+..+++++.+++++|.. .+++++|||.|+.+++.++ .+++||+|+++..+|.+...++.. .|++++
T Consensus 21 ~~~~~fE~~~~~~~~~~---~~~~~~SgT~Al~lal~~l-------~~~~gdeVi~p~~t~~a~~~~~~~----~g~~pv 86 (374)
T d1o69a_ 21 EFVNRFEQSVKDYSKSE---NALALNSATAALHLALRVA-------GVKQDDIVLASSFTFIASVAPICY----LKAKPV 86 (374)
T ss_dssp HHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT-------TCCTTCEEEEESSSCGGGTHHHHH----TTCEEE
T ss_pred HHHHHHHHHHHHHHCcC---eEEEeCCHHHHHHHHHHHc-------CCCCcCEEEeCCcchHhhHHHHhh----ccceeE
Confidence 44889999999999995 7899999999999999987 478999999999999998888755 499999
Q ss_pred EEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc
Q 012991 160 EVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID 238 (452)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~ 238 (452)
.++++.. ...... ...++..+ +.++++|+++|.. |...++++|.++|+++|+ +||.|+||++|...-.
T Consensus 87 ~~Di~~~-~~~~~~~~~~~~~~~------~~~~~aii~~~~~---G~~~d~~~i~~~~~~~~i-~vIED~a~a~g~~~~~ 155 (374)
T d1o69a_ 87 FIDCDET-YNIDVDLLKLAIKEC------EKKPKALILTHLY---GNAAKMDEIVEICKENDI-VLIEDAAEALGSFYKN 155 (374)
T ss_dssp EECBCTT-SSBCHHHHHHHHHHC------SSCCCEEEEECGG---GCCCCHHHHHHHHHHTTC-EEEEECTTCTTCEETT
T ss_pred ecccccc-cccccccccccchhc------ccccccccccccc---cchhhhHHHHHHhhccCc-chhhhhhhhhcceECC
Confidence 9965311 111222 33344444 6789999998764 889999999999999999 8999999999875322
Q ss_pred c--cccCccEEEEcCc--ccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcc--cccccccccCccccccHHHHHHH
Q 012991 239 V--KEIGADFYVSNLH--KWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLP--IESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 239 ~--~~~~~d~~~~s~~--K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
. ... .|+.++|++ |.+..+.| |+++.+++.....+ ..+. ..+.... ......|......-..+..++..
T Consensus 156 ~~~G~~-gd~~~fSf~~~K~l~tgeG-G~i~tnn~~~~~~~-~~~~--~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~q 230 (374)
T d1o69a_ 156 KALGTF-GEFGVYSYNGNKIITTSGG-GMLIGKNKEKIEKA-RFYS--TQARENCLHYEHLDYGYNYRLSNVLGAIGVAQ 230 (374)
T ss_dssp EETTSS-SSEEEEECCTTSSSCCSSC-EEEEESCHHHHHHH-HHHT--BTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHH
T ss_pred eecCCC-CceEEEeccCccccccccc-eeehhhhHHHHHhh-cccc--ccccccccccccccCCccccccchhhhhhHHH
Confidence 1 111 377777765 97666655 77777643332201 0000 0111100 01111232222222223333344
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc--ccccceEEEEcCCc--------------cccCChhhHHHH
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP--EICAAMVMVGLPSR--------------LRVMGEDDALRL 376 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~~~~l 376 (452)
+. -++.+.++-++.++++.+.|.....+....+. ........+...+. .......+...+
T Consensus 231 L~----~l~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l 306 (374)
T d1o69a_ 231 ME----VLEQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKL 306 (374)
T ss_dssp HT----THHHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHH
T ss_pred Hh----hhhhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHH
Confidence 44 35666666677788888888664332111111 11111111111000 000012245679
Q ss_pred HHHHhhhcceEeeecccCCCCCCCCCCCCCCC----C----CCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK----D----GIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~----~----~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|.++ ||.++..+.+.+. +....+. . ......+.+.++...|.+|+++.++.|.++++
T Consensus 307 ~~~L~~~-gI~~r~~y~pl~~----~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 307 IEDLKNK-QIETRPLWKAMHT----QEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp HHHHHHT-TCCCBCCCCCGGG----CGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHC-CCCEEEeCcchhh----ChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence 9999765 9998765543211 1011000 0 01234577878887899999999999998864
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=4.7e-18 Score=163.78 Aligned_cols=363 Identities=15% Similarity=0.146 Sum_probs=230.1
Q ss_pred CCCHHHHHhhhccC---CC--CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcC-Cch-hhhhhhhHHHHHHHHHHHhHhC
Q 012991 23 CISEAEIRDEFSHH---QH--GVARINNGSFG-SCPKSVLADQQKWQLKFLQQ-PDD-FYFNSLRKGILESRAAVKDLIN 94 (452)
Q Consensus 23 ~~~~~~ir~~~~~~---~~--~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~la~~~~ 94 (452)
.++..++.++|..+ +. ..-++..|... ..|+ +.+.+......+..+ |-. -.+.+..+.+.++++.++++.|
T Consensus 44 ~~sE~e~~r~~~~ls~kN~~~~~~fig~G~~~~~~p~-~i~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltG 122 (437)
T d1wyua1 44 PLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPP-VVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAG 122 (437)
T ss_dssp CCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCH-HHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCCcCccccCcccCCceeCH-HHHHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhC
Confidence 36777777776431 11 12244444444 4565 445553322222222 211 1235566778899999999999
Q ss_pred CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHH
Q 012991 95 ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEII 174 (452)
Q Consensus 95 ~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 174 (452)
.+ ..+.-.-.|++.....++.+. . ...+++++++...|++........|...|.+++.++. ++.+...
T Consensus 123 md-~~n~s~~~ga~a~~~~~~~~~--~-----~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~----~~~~~~~ 190 (437)
T d1wyua1 123 LE-IANASMYDGATALAEGVLLAL--R-----ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL----EGGRTPL 190 (437)
T ss_dssp SS-EECSCBSSHHHHHHHHHHHHH--H-----HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC----BTTBCCC
T ss_pred CC-ccccCchHHHHHHHHHHHHHH--h-----hhcccccccccccChHHhhhhhhhcccceeeEEeeec----ccccchh
Confidence 96 334444456665554444332 1 2456789999999999888777778889999999954 2221111
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCccc
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 254 (452)
+ .+ ++++++|++++|++ .|.+.++++|.+++|+.|. ++++|+.......-.....+|+|+++++ +|.
T Consensus 191 ~----~~------~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~-l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~ 257 (437)
T d1wyua1 191 P----EV------GEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGA-LFVAVADPLSLGVLKPPGAYGADIAVGD-GQS 257 (437)
T ss_dssp C----CC------CTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTC-EEEEECCTTGGGTBCCHHHHTCSEEEEE-CTT
T ss_pred h----hh------ccceeEEEEccccc-cccccchHHHHHHhhhccc-eEEeeechhhhhccccccccccceEeec-cce
Confidence 1 13 67899999999976 6999999999999999999 7888865432222234556699999998 444
Q ss_pred CcCC-----CCcEEEEEecCccccCCCCCce-e--cc-CCCC-------cccc--cccccccCcccccc---H--HHHHH
Q 012991 255 FFCP-----PSVAFLYCRKSILSSDMHHPVV-S--HE-FGNG-------LPIE--SAWIGTRDYSAQLV---I--PSAVT 311 (452)
Q Consensus 255 l~g~-----~G~G~l~~~~~~~~~~l~~~~~-~--~~-~~~~-------~~~~--~~~~~~~~~~~~~~---~--~~al~ 311 (452)
++.| +|.|++.+++++... ++... . .+ .|.. ...+ +...++.++....+ + ...+.
T Consensus 258 fg~p~g~GGP~~G~~a~~~~l~r~--lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~ 335 (437)
T d1wyua1 258 LGLPMGFGGPHFGFLATKKAFVRQ--LPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLA 335 (437)
T ss_dssp TTCCCGGGCSCCEEEEECGGGGGG--CCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHH
T ss_pred eccccCCCcCccccccccchhhcc--ccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhh
Confidence 5444 346999999988876 33322 1 11 1110 0000 01123333322212 2 22334
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
++.. +|++++.++...+++|+.+.|.+++++++..+.. ...-+.+.+ +.++.++.+.|.+ +||..+..
T Consensus 336 ~lG~--~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~-~f~ef~v~~--------~~~~~~i~k~L~d-~G~~~~~~ 403 (437)
T d1wyua1 336 ALGP--EGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-FFNEFALAL--------PKDPEAVRRALAE-RGFHGATP 403 (437)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-BCSEEEEEC--------SSCHHHHHHHHHH-TTCCCCEE
T ss_pred hcCc--ccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCC-eeeEEEEEC--------CCCHHHHHHHHHh-CCCCCCcc
Confidence 4443 3899999999999999999999888887554432 122333444 3467789999976 59987654
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.+ ....+.+.+++.-.+|.+|||+++++|++++
T Consensus 404 ~~~---------------~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 404 VPR---------------EYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp CCT---------------TSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ccc---------------CCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 433 2335789999999899999999999999874
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.81 E-value=6.3e-18 Score=161.32 Aligned_cols=257 Identities=16% Similarity=0.175 Sum_probs=182.5
Q ss_pred hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH
Q 012991 72 DFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV 151 (452)
Q Consensus 72 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a 151 (452)
..|++...+..+.+++.++++-|.+ ..+.++||.+|+..++.++ +++||+|++++..|.+....+....
T Consensus 51 ~~YsR~~nPT~~~le~~la~LEg~~---~a~~~sSGmaAi~~~~l~l--------~~~gd~vv~~~~~yg~t~~~~~~~~ 119 (394)
T d1e5ea_ 51 YIYTRLGNPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTI--------LKAGDHLISDECLYGCTHALFEHAL 119 (394)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEESCCCHHHHHHHHTHH
T ss_pred ceecCCCCHHHHHHHHHHHHHhCCc---ceeeeccchHHHHHHHHhh--------cccccccccccceeehhhHhHHHHh
Confidence 3466667788999999999999884 6788889999999888877 6899999999999999888888778
Q ss_pred HhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH-cCCCEEEEeccc
Q 012991 152 TRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD-EGVDQVFVDAAH 230 (452)
Q Consensus 152 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~~ivD~a~ 230 (452)
.+.|+++.+++. .+ .+.+++++ .+++++|+++.+.||+..+.|++++.+++++ +|+ +++||.+.
T Consensus 120 ~~~gi~~~~~d~----~d----~~~~~~~i------~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~-~vvvDnT~ 184 (394)
T d1e5ea_ 120 TKFGIQVDFINT----AI----PGEVKKHM------KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGV-LVIADNTF 184 (394)
T ss_dssp HHTTCEEEEECT----TS----TTHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTC-EEEEECTT
T ss_pred hccceeeeccCC----CC----HHHHHHhh------cccccEEEEeccCCcceeeehhhhhhhccccccCe-EEEecCcc
Confidence 889999999953 22 46788888 6899999999999999999999999887765 689 89999887
Q ss_pred ccCCccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHH
Q 012991 231 AMGSIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIP 307 (452)
Q Consensus 231 ~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (452)
+.+.. .+.-.+|+|+++.|.+|++.| ++ .|.++.+++.... ..........| +.++... ..
T Consensus 185 atP~~-~~Pl~~GaDiVvhS~TKy~~G-hsDv~~G~v~~~~~~~~~-~~~~~~~~~~G----------~~lsp~~---a~ 248 (394)
T d1e5ea_ 185 CSPMI-TNPVDFGVDVVVHSATKYING-HTDVVAGLICGKADLLQQ-IRMVGIKDITG----------SVISPHD---AW 248 (394)
T ss_dssp TCTTT-CCGGGGTCSEEEEETTTTTTC-SSCCCCEEEEECHHHHHH-HHHTCCCCCCC----------CCCCHHH---HH
T ss_pred cCccc-CCchhcCCCEEEechhhhcCC-CcccccccccchhhHHHH-HHHHHHHHhhC----------CCCChHH---HH
Confidence 65543 233345899999999998554 33 5777777665543 10000000001 1111111 11
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc--------------ccccceEEEEcCCccccCCh-h
Q 012991 308 SAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPP--------------EICAAMVMVGLPSRLRVMGE-D 371 (452)
Q Consensus 308 ~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~ 371 (452)
..++-++ .+.--.++..+++..+.++|.+.+.+ +|..|. ...++++.|.+. .+ .
T Consensus 249 ll~rgl~----TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~------~~~~ 318 (394)
T d1e5ea_ 249 LITRGLS----TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK------SGFE 318 (394)
T ss_dssp HHHHHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET------THHH
T ss_pred HHHhhch----hHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeecc------CCHH
Confidence 1222222 45555777889999999999998776 354441 023778888775 22 2
Q ss_pred hHHHHHHHH
Q 012991 372 DALRLRGHL 380 (452)
Q Consensus 372 ~~~~l~~~L 380 (452)
.+.++.+.|
T Consensus 319 ~a~~f~~~l 327 (394)
T d1e5ea_ 319 GAKKLLDNL 327 (394)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 345566666
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.3e-17 Score=162.85 Aligned_cols=346 Identities=13% Similarity=0.128 Sum_probs=210.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+.... ... ......+...++.+.+.+++..+..+.+.|++|||+|++.++. ++|.+
T Consensus 53 ~lGh~~p~i~~ai~~q~~~~~-~~~--~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk-~ar~~---- 124 (425)
T d1sffa_ 53 NTGHLHPKVVAAVEAQLKKLS-HTC--FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK-IARAA---- 124 (425)
T ss_dssp TTCBTCHHHHHHHHHHTTTCS-CCC--TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHH-HHHHH----
T ss_pred cccCCcHHHHHHHHHHHhhcC-Ccc--cccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHH-Hhhhh----
Confidence 456778889999998775431 111 1112244567788888998865324688999999999999998 45544
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhc----------CcEEEEEeCCCCCCCh-HHH-HHHHHHHHhccccCCCceEEE
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRA----------GGSVVEVQLPFPLASE-EEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~----------g~~v~~~~~~~~~~~~-~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
....+|+.....|++.......+.... .......+.+.+.... ... ....++.+. ......++.+|
T Consensus 125 -t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vaav 202 (425)
T d1sffa_ 125 -TKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK-NDAAPEDIAAI 202 (425)
T ss_dssp -HTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH-HTCCGGGEEEE
T ss_pred -hcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHH-hcccccceEEE
Confidence 345789998888888654443221100 0112222221111111 111 222222221 11124578999
Q ss_pred EEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCcc----ccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
+++......|...+ ++.|.++|++||+ ++|+|++++. |-.. .+.....+|+++++ |.+.|+..+|.++
T Consensus 203 i~EPi~g~~G~~~~~~~~l~~l~~lc~~~gi-llI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P~~av~ 279 (425)
T d1sffa_ 203 VIEPVQGEGGFYASSPAFMQRLRALCDEHGI-MLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFPLAGVT 279 (425)
T ss_dssp EECSBCTTTTSCBCCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSCCEEEE
T ss_pred EecCccCCCCcccCCHHHHHHHHHHHHHcCc-eEEeccccccCCCcchhhHHHhcCCCccceecc--cccCCCcceEEEE
Confidence 99988887887764 7789999999999 9999999874 3221 12223468999987 8887666689999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GT 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~ 344 (452)
+++++.+. + .+.. ...++.+ +..+..+..++++.+.+ +.+.++...+.+++.+.|.++. ..
T Consensus 280 ~~~~i~~~-~-~~~~---------~~~T~~g--npl~~aaa~a~L~~i~~-----~~~~~~~~~~g~~l~~~l~~~~~~~ 341 (425)
T d1sffa_ 280 GRAEVMDA-V-APGG---------LGGTYAG--NPIACVAALEVLKVFEQ-----ENLLQKANDLGQKLKDGLLAIAEKH 341 (425)
T ss_dssp EEHHHHTT-S-CTTS---------BCCSSSS--CHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EcHHHHHh-h-CCCC---------CCCCCCc--CHHHHHHHHHHHHHHHH-----hhhhhhhhhhhhhhhhhhhhhHhhC
Confidence 99998775 2 2210 1111112 22233334445555553 4557777788888888876642 22
Q ss_pred CcCCCcccccceEEEEcCCc--cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 345 SLGSPPEICAAMVMVGLPSR--LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
.++......+.++.+.+... ....+..-...+.+.+.++ ||.+.... ...+.+|++++.
T Consensus 342 ~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~g------------------~~~n~i~~~PpL 402 (425)
T d1sffa_ 342 PEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCG------------------PYYNVLRILVPL 402 (425)
T ss_dssp TTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEES------------------TTSCEEEECCCT
T ss_pred CceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHC-CCEEeccC------------------CCCCEEEEECCC
Confidence 22222223456666655211 1111122345677788775 99875321 224689999998
Q ss_pred cCCHHHHHHHHHHHHHHHhc
Q 012991 423 YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~~~ 442 (452)
..|++||+.+++++++++++
T Consensus 403 ~it~~eid~~l~~l~~al~e 422 (425)
T d1sffa_ 403 TIEDAQIRQGLEIISQCFDE 422 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999876
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=3.1e-18 Score=163.21 Aligned_cols=309 Identities=17% Similarity=0.172 Sum_probs=197.6
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+.++++++++.|.+ ..+.++||-+|+..++. + +.+||+|++....|.+.+..+..+..+
T Consensus 49 YsR~gnPT~~~lE~~la~LE~~~---~a~~~sSGmaAi~~~l~-~--------l~~gd~iv~~~~~yg~t~~~~~~~l~~ 116 (393)
T d1n8pa_ 49 YSRSQNPNRENLERAVAALENAQ---YGLAFSSGSATTATILQ-S--------LPQGSHAVSIGDVYGGTHRYFTKVANA 116 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHH-T--------SCSSCEEEEESSCCHHHHHHHHHTSTT
T ss_pred eeCCCChHHHHHHHHHHHHhCCc---eEEEecCchhHHHhhhh-c--------ccCCCeeeeeeeecccchhhhhhhhhc
Confidence 55556677899999999999874 56777777788765554 3 588999999999999988888877788
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHH----HcCCCEEEEecc
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR----DEGVDQVFVDAA 229 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~----~~~~~~~ivD~a 229 (452)
.|+++..+ .. + .+++++++ .+++++|+++.|.||+..+.|++.|+++|| ++|+ +++||.+
T Consensus 117 ~gi~~~~~----~~--~---~~~~~~~i------~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~-~lvVDnT 180 (393)
T d1n8pa_ 117 HGVETSFT----ND--L---LNDLPQLI------KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDV-ILVVDNT 180 (393)
T ss_dssp TCSCCEEE----SS--H---HHHHHHHS------CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTC-EEEEECT
T ss_pred ccceeEEe----ec--c---hHHHHHHh------hhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCc-eEEEecC
Confidence 89988887 21 1 36788888 689999999999999999999999999999 6789 8999998
Q ss_pred cccCCccccccccCccEEEEcCcccCcCCCC---cEEEEEecCcc-ccCCCCCceeccCCCCcccccccccccCcccccc
Q 012991 230 HAMGSIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSIL-SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLV 305 (452)
Q Consensus 230 ~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (452)
.+.+.. .+.-.+|+|+++.|.+|++.| .| .|.++.+++.+ .+ + ... ....| +.++.. .
T Consensus 181 ~atP~~-~~Pl~~GADiVvhS~TKyi~G-hsDv~~G~v~~~~~~~~~~-l-~~~-~~~~G----------~~~~p~---~ 242 (393)
T d1n8pa_ 181 FLSPYI-SNPLNFGADIVVHSATKYING-HSDVVLGVLATNNKPLYER-L-QFL-QNAIG----------AIPSPF---D 242 (393)
T ss_dssp TTHHHH-CCGGGGTCSEEEEETTTTTTC-SSCCCCEEEEESCHHHHHH-H-HHH-HHHHC----------CCCCHH---H
T ss_pred ccCccc-CCchhhCCCEEEEccccccCC-CCccccceeeecchhHHHH-H-HHH-HhhcC----------CCCChH---H
Confidence 765442 122234899999999998655 33 46666654433 22 1 000 00011 111111 1
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH-cCC-CcCCCc----------------ccccceEEEEcCCcccc
Q 012991 306 IPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA-WGT-SLGSPP----------------EICAAMVMVGLPSRLRV 367 (452)
Q Consensus 306 ~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~----------------~~~~~~~~~~~~~~~~~ 367 (452)
.+..++-++ .+..-.++..+++..+.+.|.+. +.+ ++..|. ...++++.|.+..
T Consensus 243 a~ll~rgl~----Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~---- 314 (393)
T d1n8pa_ 243 AWLTHRGLK----TLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG---- 314 (393)
T ss_dssp HHHHHHHHT----THHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS----
T ss_pred HHHHHhCCc----chhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeC----
Confidence 222333333 34555677788889999999653 333 233321 0126689998851
Q ss_pred CChhhHHHHHHHHhhhcceEeeeccc-----CCCCCCC--CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 368 MGEDDALRLRGHLRVRFGVEVPIHYQ-----APKDDGQ--PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 368 ~~~~~~~~l~~~L~~~~gI~v~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+...+.++.+.|. -+.+....+.. .+....+ ...-.++..+..++.||+|++. ||++.+++.|++.+
T Consensus 315 -~~~~~~~f~~~l~-l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGl----E~~~DLi~Dl~~AL 388 (393)
T d1n8pa_ 315 -GAEAASKFASSTR-LFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGI----EDTDDLLEDIKQAL 388 (393)
T ss_dssp -CHHHHHHHHHHCS-SSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHhCC-cceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHH
Confidence 1223556777763 23433322211 0000000 0111122235677899999985 55666666666665
Q ss_pred hc
Q 012991 441 EE 442 (452)
Q Consensus 441 ~~ 442 (452)
+.
T Consensus 389 ~~ 390 (393)
T d1n8pa_ 389 KQ 390 (393)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.79 E-value=9e-19 Score=172.31 Aligned_cols=327 Identities=14% Similarity=0.135 Sum_probs=192.9
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
.-.+.+.++++.+++++|.+ .++++++||+|+.+++.++ .++||+|+.... +.+....+ ...|.
T Consensus 72 ~~dpt~~~lE~~~a~l~G~e---~al~~~SGt~An~~a~~~l--------~~~Gd~Vi~~~~-f~~~~~~i----~~~g~ 135 (456)
T d1c7ga_ 72 AGSENFYHLEKTVKELFGFK---HIVPTHQGRGAENLLSQLA--------IKPGQYVAGNMY-FTTTRFHQ----EKNGA 135 (456)
T ss_dssp SSCHHHHHHHHHHHHHHCCS---EEEEESSHHHHHHHHHHHH--------CCTTEEEEESSC-CHHHHHHH----HHTTE
T ss_pred cCCchHHHHHHHHHHHhCCC---eEEECCCHHHHHHHHHHHh--------cCCCCeEecCcc-hHHHHHHH----HHcCc
Confidence 34566889999999999994 7899999999999999987 589999887654 33322222 33577
Q ss_pred EEEEEeCCC---C---CCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCc-ccc---cHHHHHHHHHHcCCCEEE
Q 012991 157 SVVEVQLPF---P---LASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPC-VVI---PVRKLVKICRDEGVDQVF 225 (452)
Q Consensus 157 ~v~~~~~~~---~---~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG-~~~---~l~~i~~l~~~~~~~~~i 225 (452)
....+..+. + ....+.+ +++|++.|++.. ..++.++++++++|+.| ... ++++|.++|++||+ ++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~--~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~-~~~ 212 (456)
T d1c7ga_ 136 TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGI-KIF 212 (456)
T ss_dssp EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC-CEE
T ss_pred eeeeccccccccccccCCccccCCHHHHHHHhhhcC--CccceeEEeeecccccccceecHHHHHHHHHHHHHcCC-EEE
Confidence 776654310 0 0112344 899999997542 24577899999988865 444 46788999999999 799
Q ss_pred EecccccCCcc-----------ccccc------cCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCc
Q 012991 226 VDAAHAMGSIK-----------IDVKE------IGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGL 288 (452)
Q Consensus 226 vD~a~~~g~~~-----------~~~~~------~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~ 288 (452)
+|+++..+... .++.. ..+|++++|++|.+.++.| |+++.+++.+.... ..+.....+...
T Consensus 213 ~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~-r~~~~~~~g~~~ 290 (456)
T d1c7ga_ 213 YDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAA-KELVVVYEGMPS 290 (456)
T ss_dssp EECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHH-HHHHHHHTCCTT
T ss_pred EEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHH-HHhccccCCCcc
Confidence 99998654321 11100 1479999999998666665 88888765443201 111000001000
Q ss_pred ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCcc-cc
Q 012991 289 PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRL-RV 367 (452)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 367 (452)
.+..+...+.++ ++.+.+.. +.+ ..++..++.++|.+.|.+. ++.+..+.. .+.+.+...... ..
T Consensus 291 ------~g~~~~~~~~a~--a~~l~e~~--~~~-~l~~r~~~~~~L~e~L~~~-g~~vv~p~g--~~~v~vda~~~~~~i 356 (456)
T d1c7ga_ 291 ------YGGLAGRDMEAM--AIGLREAM--QYE-YIEHRVKQVRYLGDKLREA-GVPIVEPTG--GHAVFLDARRFCPHL 356 (456)
T ss_dssp ------TTTCCHHHHHHH--HHHHHHHT--CHH-HHHHHHHHHHHHHHHHHHT-TCCBCSSCC--SSEEEEEHHHHCTTS
T ss_pred ------cchhhHHHHHHH--HHHHHHhc--CHH-HHHHHHHHHHHHHHHHHhc-cCCcccCCC--CcceeEechhhccCC
Confidence 012222222222 22222221 333 3444567778999999987 777666654 333333211000 00
Q ss_pred -CChhhHHHHHHHHhhhcceEee-ecccCCCCCCCCCCCCCCC-CCCccceEEecccc-cCCHHHHHHHHHHHHHHHhcc
Q 012991 368 -MGEDDALRLRGHLRVRFGVEVP-IHYQAPKDDGQPQAGARDK-DGIITGYARISHQV-YNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 368 -~~~~~~~~l~~~L~~~~gI~v~-~~~~~~~~~~~~~~~~~~~-~~~~~~~iRis~~~-~~t~~di~~l~~~l~~~~~~~ 443 (452)
........+...|..+.||... .+....+. .+.... .......+|++++. ..|.+|||.++++|+++.++-
T Consensus 357 ~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~-----~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~ 431 (456)
T d1c7ga_ 357 TQDQFPAQSLAASIYMETGVRSMERGIVSAGR-----SKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp CGGGCHHHHHHHHHHHHHSEECEEESHHHHCB-----CSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTG
T ss_pred CcccccHHHHHHHHHHHhCeeecccCcccccc-----CCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhh
Confidence 1123445555555555698752 22211100 000000 01234579999873 349999999999999998754
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.79 E-value=4.4e-18 Score=163.70 Aligned_cols=337 Identities=14% Similarity=0.110 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCC--C
Q 012991 53 KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR--N 130 (452)
Q Consensus 53 ~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~--g 130 (452)
++-++++.+.+.. ..+.. -+..+++++.+++++|.+ .+++++|||.|+.+++.++. ..+ +
T Consensus 12 ~~~~~~v~~~l~~------~~~~~--G~~v~~fE~~~~~~~g~k---~ai~~~Sgt~Al~~al~al~-------~~~~~~ 73 (371)
T d2fnua1 12 KEDKKAVLEVLNS------KQLTQ--GKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFS-------EFSADR 73 (371)
T ss_dssp HHHHHHHHHHHTS------SCCSS--SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSS-------CCCTTS
T ss_pred HHHHHHHHHHHcC------CCccC--CHHHHHHHHHHHHHHCcC---eEEEEecHHHHHHHHHHHhc-------ccCCCC
Confidence 4456666665531 11222 245889999999999995 78999999999999999873 344 4
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccH
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV 209 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l 209 (452)
++|+++..+|.++..++.. .|++++.++++ .+... .+++++.+ ++++++|+++|. .|...++
T Consensus 74 ~eVi~p~~t~~a~~~ai~~----~G~~pv~vDi~----~~~~~~~~~~~~~~------~~~t~avi~vh~---~G~~~~~ 136 (371)
T d2fnua1 74 NEIITTPISFVATANMLLE----SGYTPVFAGIK----NDGNIDELALEKLI------NERTKAIVSVDY---AGKSVEV 136 (371)
T ss_dssp CEEEECSSSCTHHHHHHHH----TTCEEEECCBC----TTSSBCGGGSGGGC------CTTEEEEEEECG---GGCCCCH
T ss_pred Ceeecccccccccceeeec----cCccccccccc----ccccccchhhhhhc------cchhhccccccc---ccccccc
Confidence 5899999999998888755 59999999653 22222 45566666 789999999875 4999999
Q ss_pred HHHHHHHHHcCCCEEEEecccccCCcccccc--cc-CccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCC
Q 012991 210 RKLVKICRDEGVDQVFVDAAHAMGSIKIDVK--EI-GADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGN 286 (452)
Q Consensus 210 ~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~--~~-~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~ 286 (452)
++|.++|+++++ ++|.|+||+.|...-+.. .. .+.++++...|.+.++.| |+++.+++.....+ ..+. .+|.
T Consensus 137 ~~i~~~~~~~~i-~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~G-G~i~t~~~~~~~~~-~~~~--~~g~ 211 (371)
T d2fnua1 137 ESVQKLCKKHSL-SFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEG-GAVVTNDSELHEKM-KLFR--SHGM 211 (371)
T ss_dssp HHHHHHHHHHTC-EEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHHHHHH-HHHT--BTTE
T ss_pred ccccccccccch-hhccchhhccCceeccccCCccccccccccccccccccccc-eEEEeechhhhhhc-cccc--cccc
Confidence 999999999999 799999999987633211 11 233445555797766665 88887754333201 0000 0110
Q ss_pred C----cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc---ccccceEEE
Q 012991 287 G----LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP---EICAAMVMV 359 (452)
Q Consensus 287 ~----~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~~~~~~ 359 (452)
. ........|...-..-+....++..+. -++...++-+++..++.+.|.+.+++.+..+. ......+.+
T Consensus 212 ~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~----~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i 287 (371)
T d2fnua1 212 LKKDFFEGEVKSIGHNFRLNEIQSALGLSQLK----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPI 287 (371)
T ss_dssp EESSSSCEEESSCCCBCCCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEE
T ss_pred ccccccccccccccccccccchhhhhhhhhhh----hccchhhhhhhhhhhhcccccccccccccccccccccccccccc
Confidence 0 000111112222222222233444444 46777777778888888888876555443221 112233333
Q ss_pred EcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCC---CC--C----CCccceEEecccccCCHHHHH
Q 012991 360 GLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGAR---DK--D----GIITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~---~~--~----~~~~~~iRis~~~~~t~~di~ 430 (452)
.+... ...+.+++.+.|.++ ||.++..+.+... ..... .. + ......+.+.++...|.+|++
T Consensus 288 ~~~~~----~~~~r~~~~~~L~~~-gI~~~~~y~pl~~----~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~ 358 (371)
T d2fnua1 288 LMHQK----FFTCKKLILESLHKR-GILAQVHYKPIYQ----YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQ 358 (371)
T ss_dssp EECGG----GGGGHHHHHHHHHHT-TEECBCCCCCGGG----SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred ccccc----chhHHHHHHHHHHHC-CCCcceeCccccc----CHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHH
Confidence 33310 122456789999764 9998766543210 00000 00 0 112346888778778999999
Q ss_pred HHHHHHHHHHhc
Q 012991 431 KFRDAVILLVEE 442 (452)
Q Consensus 431 ~l~~~l~~~~~~ 442 (452)
+.++.|++.++.
T Consensus 359 ~I~~~i~~~~~~ 370 (371)
T d2fnua1 359 NIAHSVLKTFES 370 (371)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998763
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=5.9e-17 Score=155.85 Aligned_cols=319 Identities=14% Similarity=0.111 Sum_probs=203.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+......+.. + ..+...++.+.+.+..... .+.+.|+++|++|++.++.. +|.+
T Consensus 50 ~lGh~hp~v~~a~~~~~~~~~~~~~~-~---~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~Aik~-Ar~~---- 119 (387)
T d1vefa1 50 NLGHGNPEVVEAVKRQAETLMAMPQT-L---PTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKF-ARAH---- 119 (387)
T ss_dssp TTCBTCHHHHHHHHHHHHHCCCCCTT-S---CCHHHHHHHHHHHHTSCTT-EEEEEEESSHHHHHHHHHHH-HHHH----
T ss_pred hhcCCcHHHHHHHHHHHHhhcccccc-c---CCchHHHHHHHhhhhcccc-ceeeccccCchHHHHHHHHH-HHhh----
Confidence 36777777999999888754222221 1 1234455555566655442 36789999999999999984 4444
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHH----HhcC-----cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYV----TRAG-----GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a----~~~g-----~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
....+|+.....|++.......+. .+.+ ..+..+ |.++ .+.|++.+ .+++.+|+++
T Consensus 120 -t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~----p~~d----~~~l~~~~------~~~iAavi~E 184 (387)
T d1vefa1 120 -TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFI----PYND----VEALKRAV------DEETAAVILE 184 (387)
T ss_dssp -HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEE----CTTC----HHHHHHHC------CTTEEEEEEC
T ss_pred -cccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEe----CCCC----HHHHHHhc------CCCeEEEEEE
Confidence 445788888888877543332211 0000 234444 3333 57888888 5789999999
Q ss_pred ccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCccc----cccccCccEEEEcCcccCcCCCCcEEEEEec
Q 012991 198 HITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIKI----DVKEIGADFYVSNLHKWFFCPPSVAFLYCRK 268 (452)
Q Consensus 198 ~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~~----~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~ 268 (452)
......|...+ +++|.++|++||+ ++|+|++++ +|-... ......+|+++++ |.+.|+.-.+.+..++
T Consensus 185 Pi~g~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~ 261 (387)
T d1vefa1 185 PVQGEGGVRPATPEFLRAAREITQEKGA-LLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVMRE 261 (387)
T ss_dssp SEETTTTSEECCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCc-eEEecccccccCccCCCcccccCCcCCceeeec--ccCCCCccccccccce
Confidence 88888888766 8899999999999 999999985 433321 2223468999998 8887766577777887
Q ss_pred CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q 012991 269 SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGS 348 (452)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 348 (452)
+.... ..+.. .+ .++ +.+..+..+..+.++.+.+ +.+.++++++.+++.+.|.++.. +.+.
T Consensus 262 ~~~~~--~~~~~---~g------~T~--~gnPla~aaa~a~L~~l~~-----~~~~~~v~~~g~~l~~~L~~l~~-~~v~ 322 (387)
T d1vefa1 262 EVARS--MPKGG---HG------TTF--GGNPLAMAAGVAAIRYLER-----TRLWERAAELGPWFMEKLRAIPS-PKIR 322 (387)
T ss_dssp HHHHT--SCTTS---SC------CSS--TTCHHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHTSCC-TTEE
T ss_pred eeeec--cccCC---cc------ccC--CCCcchhhhcccchhhccc-----ccccchHhhhhHHHHHHHHhcCC-CceE
Confidence 77664 12210 01 111 1122233333444555543 44577788888899999876522 2222
Q ss_pred CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHH
Q 012991 349 PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~d 428 (452)
.....+.+..+.+.+ .....+.+.+.+. |+.+.. ..++.+|++++...|++|
T Consensus 323 ~vrg~Gl~~~ie~~~-------~~~~~~~~~~~~~-g~l~~~--------------------~g~~~ir~~Ppl~it~~~ 374 (387)
T d1vefa1 323 EVRGMGLMVGLELKE-------KAAPYIARLEKEH-RVLALQ--------------------AGPTVIRFLPPLVIEKED 374 (387)
T ss_dssp EEEEETTEEEEEESS-------CSHHHHHHHHHHH-CEECEE--------------------SSTTEEEECCCTTCCHHH
T ss_pred EEeecceEEEEEEeC-------CchHHHHHHHHHC-CCeEEe--------------------cCCCEEEEECCccCCHHH
Confidence 222345666677641 2334566666554 777532 123689999988889999
Q ss_pred HHHHHHHHHHHH
Q 012991 429 YEKFRDAVILLV 440 (452)
Q Consensus 429 i~~l~~~l~~~~ 440 (452)
|+.+++++++++
T Consensus 375 ld~~~~~i~~aL 386 (387)
T d1vefa1 375 LERVVEAVRAVL 386 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.2e-16 Score=154.69 Aligned_cols=327 Identities=11% Similarity=0.138 Sum_probs=208.9
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccc--c-
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT--E- 124 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~--~- 124 (452)
.|..++.+.+++.+.+...... ... .......++.+.++++.+. +.+.++++||+|+..++.. +|++. .
T Consensus 55 lGh~~p~i~~Av~~q~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~---~~v~~~~sGseA~e~Aik~-ar~~~~~~~ 126 (404)
T d2byla1 55 QGHCHPKIVNALKSQVDKLTLT-SRA---FYNNVLGEYEEYITKLFNY---HKVLPMNTGVEAGETACKL-ARKWGYTVK 126 (404)
T ss_dssp TCBTCHHHHHHHHHHHTTCCCC-CTT---EEESSHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHH-HHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHHhhCCCc-ccc---cccchHHHHHHhhhhcccc---cccccccCccccchhHHHH-HHHHhhhcc
Confidence 4677888999999877543211 111 1223355677778888766 5899999999999999984 44332 1
Q ss_pred CCCCCCCEEEEeCCcchhHHHHHHHH----HHhcC-----cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 125 GRFHRNDTVLMLHCAFQAVKKSIQAY----VTRAG-----GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 125 ~~~~~g~~Vl~~~~~~~s~~~~~~~~----a~~~g-----~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.....+.+|+.....|++........ ..+.+ ..+..+ |.++ .+.+++.++ .+++.+|+
T Consensus 127 ~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~----p~~d----~~~l~~~l~-----~~~iAavi 193 (404)
T d2byla1 127 GIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDII----PYND----LPALERALQ-----DPNVAAFM 193 (404)
T ss_dssp CCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEE----CTTC----HHHHHHHHT-----STTEEEEE
T ss_pred ccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEe----cccC----HHHHHHhcC-----CCCeEEEE
Confidence 11123457777777666532221100 01111 123334 3333 678888885 46899999
Q ss_pred EeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEEE
Q 012991 196 IDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~ 265 (452)
++......|.+.+ +++|.++|++||+ ++|+|+++. +|-.. .+.....+|+++++ |.+.|+ ..+|.++
T Consensus 194 iEPi~g~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~ 270 (404)
T d2byla1 194 VEPIQGEAGVVVPDPGYLMGVRELCTRHQV-LFIADEIQTGLARTGRWLAVDYENVRPDIVLLG--KALSGGLYPVSAVL 270 (404)
T ss_dssp ECSSBTTTTSBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEE
T ss_pred ECCccCCCCCccCCHHHHHHHHHHHHhcCe-EEEeeccccccccccccchhhhcCCCCCEEEEC--chhhCCCccceeee
Confidence 9988888898876 8899999999999 999999985 33221 22223358999777 988765 4478999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++.+. ..+.. . ..++ ..+..+..+..++++.+.+ +.+.++.+++..++.+.|.++.. .
T Consensus 271 ~~~~i~~~--~~~~~---~------~~T~--~gnpl~~aaa~a~L~~i~~-----~~l~~~~~~~g~~l~~~l~~l~~-~ 331 (404)
T d2byla1 271 CDDDIMLT--IKPGE---H------FSTY--GGNPLGCRVAIAALEVLEE-----ENLAENADKLGIILRNELMKLPS-D 331 (404)
T ss_dssp ECHHHHTT--SCTTS---S------CCSS--TTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHTSCT-T
T ss_pred echhhhhc--cCCCC---C------CcCC--CcCHHHHHHHHHHHHHHHh-----cCchhhhhHhhHHHHHHHHhhcc-c
Confidence 98888765 22211 0 0011 1122233334445555553 44677788888899999887522 2
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
.+......+.+..+.+.+. ......++.+.|.++ |+.+... .++.+|++++...|
T Consensus 332 ~i~~vRg~Gl~~~i~~~~~----~~~~~~~~~~~l~~~-Gvl~~~~--------------------~~~~i~l~PpL~it 386 (404)
T d2byla1 332 VVTAVRGKGLLNAIVIKET----KDWDAWKVCLRLRDN-GLLAKPT--------------------HGDIIRFAPPLVIK 386 (404)
T ss_dssp TEEEEEEETTEEEEEECCC----SSCCHHHHHHHHHHT-TEECEEE--------------------ETTEEEECCCTTCC
T ss_pred cceeeeecccEEEEEEecC----CchhHHHHHHHHHhC-CeEEecC--------------------CCCEEEEECCcCCC
Confidence 2222223456666665421 233566788888775 9998532 23589999988889
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
++||++++++|++.+..
T Consensus 387 ~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 387 EDELRESIEIINKTILS 403 (404)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998865
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.8e-17 Score=161.55 Aligned_cols=344 Identities=11% Similarity=0.079 Sum_probs=209.8
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|..++.|.+++.+.+.... +... .....+...++.+++.+....+ .+.+.|+++|++|+..++.. +|++....-
T Consensus 57 lGh~~p~i~~Ai~~q~~~~~-~~~~--~~~~~~~~~~l~~~l~~~~~~~-~~~v~f~~sGseA~e~A~k~-ar~~~~~~g 131 (429)
T d1s0aa_ 57 HGYNHPQLNAAMKSQIDAMS-HVMF--GGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKM-ALQYWQAKG 131 (429)
T ss_dssp TCBSCHHHHHHHHHHHHHCS-CCCC--SSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHH-HHHHHHHHT
T ss_pred hcCCcHHHHHHHHHHHHhcC-Cccc--CCccchHHHHHHHHHHhhhccC-cceeeeccccccchhhhhhh-hhheeeccc
Confidence 45778889999999876532 1111 1112334556667778777664 57899999999999999874 444432112
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHh-------c---CcEEEEEeCCCCC---CChHHHHHHHHHHHhccccCCCceEEE
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTR-------A---GGSVVEVQLPFPL---ASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~-------~---g~~v~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
..+.+|+.....|++.......+... . .......+..... ..+....+.+++.+.+. .+++.+|
T Consensus 132 ~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iaav 208 (429)
T d1s0aa_ 132 EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAV 208 (429)
T ss_dssp CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEE
T ss_pred ccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhc---CCcccee
Confidence 34568999888887754333211100 0 0111222211110 11112245555555443 5789999
Q ss_pred EEeccC-CCCcccc-c---HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEE
Q 012991 195 IIDHIT-SMPCVVI-P---VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAF 263 (452)
Q Consensus 195 ~~~~~~-n~tG~~~-~---l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~ 263 (452)
+++-.. +..|... | +++|.++|++||+ ++|+|+++. +|-.. .......+|+++.+ |.+.|+ ..+|.
T Consensus 209 ivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gi-llI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~a 285 (429)
T d1s0aa_ 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGI-LLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSA 285 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEE
T ss_pred eecceeccCCCccCCCHHHHHHHHHHHHHcCc-ceehhhccccccccccccccccceecccccccc--cccccccccccc
Confidence 998654 4445544 3 7899999999999 999999986 33221 22223468999998 877443 45889
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
+++++++.+. +.... ........+ ...+..+..+..+.++.+.+ +.+.++..++.+++.+.|.++..
T Consensus 286 v~~~~~i~~~-~~~~~-----~~~~~~~~T--~~gnp~~~aaa~a~L~~i~~-----~~~~~~~~~~g~~l~~~L~~l~~ 352 (429)
T d1s0aa_ 286 TLTTREVAET-ISNGE-----AGCFMHGPT--FMGNPLACAAANASLAILES-----GDWQQQVADIEVQLREQLAPARD 352 (429)
T ss_dssp EEECHHHHHH-HHTST-----TSSCSCCCT--TTTCHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHGGGGG
T ss_pred hhhHHHHHhc-cCCCC-----CcceeecCC--CCCCcccchhhhcccccccc-----ccccchhhHHHHHHHHHHHHhcc
Confidence 8998887654 11100 000000011 11222233334445555543 45788889999999999977633
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
...+......+.+..+.+. ...+...+...+.++ |+.+.. .++.+|++++..
T Consensus 353 ~~~v~~vrg~Gl~~~~e~~------~~~~~~~~~~~~~~~-Gl~~~~---------------------~g~~i~~~Ppl~ 404 (429)
T d1s0aa_ 353 AEMVADVRVLGAIGVVETT------HPVNMAALQKFFVEQ-GVWIRP---------------------FGKLIYLMPPYI 404 (429)
T ss_dssp CTTEEEEEEETTEEEEEES------SCBCHHHHHHHHHHT-TEECCC---------------------BTTEEEECCCTT
T ss_pred CCceEEEeecccEEEEEec------CcccHHHHHHHHHHC-CcEEEe---------------------cCCEEEEeCCcC
Confidence 2222222344667777764 234566788888775 998742 235899999888
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 012991 424 NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~~ 443 (452)
.|++||++++++|++.+++.
T Consensus 405 it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 405 ILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CCHHHHHHHHHHHHHHTSSG
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 89999999999999998753
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.75 E-value=3.4e-16 Score=151.57 Aligned_cols=332 Identities=10% Similarity=0.119 Sum_probs=195.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccccc--
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTE-- 124 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~-- 124 (452)
..|...+.|.+++.+.+...... .. .........+.+.++++.+. +.+.|+.+|++|+..++... ++++.
T Consensus 52 ~lGh~~p~v~~Ai~~q~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~---~~v~~~~sgs~a~~~a~k~a-r~~~~~~ 123 (404)
T d1z7da1 52 NQGHCHPNILNAMINQAKNLTIC-SR---AFFSVPLGICERYLTNLLGY---DKVLMMNTGAEANETAYKLC-RKWGYEV 123 (404)
T ss_dssp TTCBTCHHHHHHHHHHHTTCSCC-CT---TSEEHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-HHHHHHT
T ss_pred hhhcCcHHHHHHHHHHHHhCCCc-cc---ccchHHHHHHHHhhhhcccc---ceeeeeccccchHHHHHHHH-HHHHhhc
Confidence 34666777999998876542111 11 11233456677777877766 57899999999999888744 33321
Q ss_pred C-CCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCC-----CCCCChHHHHHHHHHHHhccccCCCceEEEEEec
Q 012991 125 G-RFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLP-----FPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 125 ~-~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
. .......++.....|++..............+....+.. .|.+. .+.++..+. .+++.+|+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~-----~~~iAavi~EP 194 (404)
T d1z7da1 124 KKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDD----LEALEEELK-----DPNVCAFIVEP 194 (404)
T ss_dssp SCCCTTCCEEEEETTC--------------------------CEEEECTTC----HHHHHHHHT-----STTEEEEEECS
T ss_pred ccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccch----HHHHHHHhc-----CCCEEEEEEEE
Confidence 1 112334777777777765433322111111111111100 02222 466666664 46889999998
Q ss_pred cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC-CCcEEEEEec
Q 012991 199 ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP-PSVAFLYCRK 268 (452)
Q Consensus 199 ~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~~~~ 268 (452)
.....|.+.| +++|.++|++||+ ++|+|++++ +|-. ........+|+++++ |.+.|+ ..+|.+++++
T Consensus 195 i~g~~G~~~~~~~fl~~l~~lc~~~g~-llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~ 271 (404)
T d1z7da1 195 IQGEAGVIVPSDNYLQGVYDICKKYNV-LFVADEVQTGLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYPISAVLAND 271 (404)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECH
T ss_pred EcCCCCCccCCHHHHHHHHHHHHHcCC-EEEEEcCccCCCcccccccccccCCCCCEEEEc--ccccCCCCCcccccchH
Confidence 8888898877 8999999999999 899999985 3322 112223468999887 887654 3478999998
Q ss_pred CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CCCcC
Q 012991 269 SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GTSLG 347 (452)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~~~~ 347 (452)
++.+. ..+.. ...++.+ +..+..+..+.++.+.+ +.+.++..++..++.+.+.+.. ...++
T Consensus 272 ~i~~~--~~~~~---------~~~T~~g--npl~~aaa~a~L~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~v 333 (404)
T d1z7da1 272 DIMLV--IKPGE---------HGSTYGG--NPLAASICVEALNVLIN-----EKLCENAEKLGGPFLENLKRELKDSKIV 333 (404)
T ss_dssp HHHTT--CCTTC---------CCCTTTT--CHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred HHHcc--CCCCC---------cCcCCCC--Ccchhhhhhhhhhhhhc-----chhhhhhccchhHHHHHHHHHHhcCCCe
Confidence 88775 22211 0111112 22222333334454443 3445566666666666665532 22232
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
......+.+..+.+.+ +..+..++...|.++ |+.+... .++.||++++...|++
T Consensus 334 ~~vrg~Gl~~~i~~~~-----~~~~~~~~~~~l~~~-Gl~~~~~--------------------~~~~ir~~Ppl~it~~ 387 (404)
T d1z7da1 334 RDVRGKGLLCAIEFKN-----ELVNVLDICLKLKEN-GLITRDV--------------------HDKTIRLTPPLCITKE 387 (404)
T ss_dssp EEEEEETTEEEEEECT-----TTCCHHHHHHHHHHT-TEECCEE--------------------TTTEEEECCCTTCCHH
T ss_pred EEEEeeCcEEEEEEcC-----CcccHHHHHHHHHhC-CeEEecC--------------------CCCEEEEECCcCCCHH
Confidence 2222346677776642 234556788888775 9987422 2357999998878999
Q ss_pred HHHHHHHHHHHHHhc
Q 012991 428 DYEKFRDAVILLVEE 442 (452)
Q Consensus 428 di~~l~~~l~~~~~~ 442 (452)
||++++++|++.++.
T Consensus 388 ~id~~~~~l~~alk~ 402 (404)
T d1z7da1 388 QLDECTEIIVKTVKF 402 (404)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999864
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=1.5e-15 Score=148.04 Aligned_cols=375 Identities=14% Similarity=0.127 Sum_probs=227.7
Q ss_pred CCCCHHHHHhhhcc-------CCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHHHHHHhH
Q 012991 22 RCISEAEIRDEFSH-------HQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD--FYFNSLRKGILESRAAVKDL 92 (452)
Q Consensus 22 ~~~~~~~ir~~~~~-------~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~ 92 (452)
+.++..++.+++.. .....+.++.+ +-..++.+.+.+.++...+ .|-. -.+.+..+.+-+.+..++++
T Consensus 42 P~~sE~El~r~~~~la~kN~~~~~~~~~lG~~-~~hy~P~v~~~~~~~~TaY--TPYQPaEiSQG~LQalfEfQtmi~eL 118 (471)
T d1wyub1 42 PEVDELTLVRHYTGLSRRQVGVDTTFYPLGSC-TMKYNPKLHEEAARLFADL--HPYQDPRTAQGALRLMWELGEYLKAL 118 (471)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCTTTSCCCBTTT-CCCCCCHHHHHHHHTTSSC--CTTSCGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCccccccCCccc-cCccCcchhhhHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777766643 12234344432 3334444777776532211 1211 11345566788999999999
Q ss_pred hCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 93 INADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 93 ~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
.|.+ ..+.-.-.|+|.+-..++.+.. ...+........+++..+.++.+.... ....+..++.++. +..+.
T Consensus 119 TGMd-vaNaS~yDGatA~aeA~~ma~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~ 189 (471)
T d1wyub1 119 TGMD-AITLEPAAGAHGELTGILIIRA-YHEDRGEGRTRRVVLVPDSAHGSNPAT---ASMAGYQVREIPS----GPEGE 189 (471)
T ss_dssp HTCS-EEECCCSSHHHHHHHHHHHHHH-HHHHTTCTTTCCEEEEETTSCTHHHHH---HHHTTCEEEEECB----CTTSS
T ss_pred hCCC-ccccccchHHHHHHHHHHHHHH-HhhhcccccccccccCCcccccceeee---eecccceeecccc----ccccc
Confidence 9995 3344444566654444433331 100000112234455555555544443 3445777777743 22333
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-cccccccCccEEEEc
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-KIDVKEIGADFYVSN 250 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~~~~~~~~d~~~~s 250 (452)
. .+.+.... ..++..++++++++.-+.....+++.+++++.+. .+++|.+.-.... .......+.|+++.+
T Consensus 190 ~~~~~~~~~~------~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~-~~~~~~~~~~~~~~l~~p~~~g~div~vg 262 (471)
T d1wyub1 190 VDLEALKREL------GPHVAALMLTNPNTLGLFERRILEISRLCKEAGV-QLYYDGANLNAIMGWARPGDMGFDVVHLN 262 (471)
T ss_dssp BCHHHHHHHC------STTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTC-EEEEEGGGGGGTTTTCCHHHHTCSEEECC
T ss_pred ccchhhhhhh------hccccceeeccCCCcccccchhhhhHHHHHhccc-cccccccchhhhhhccccCcccccccccc
Confidence 3 56666665 6788999999988764444468899999999999 8999976433222 122333468888888
Q ss_pred CcccCc-----CCCCcEEEEEecCccccCCCCCceeccCCCC---------cccccccccccCccccccHHHHHHHHHHh
Q 012991 251 LHKWFF-----CPPSVAFLYCRKSILSSDMHHPVVSHEFGNG---------LPIESAWIGTRDYSAQLVIPSAVTFVSRF 316 (452)
Q Consensus 251 ~~K~l~-----g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 316 (452)
.++.++ |++|.|++.+++++..+ ++..... .+.. .-+.+...++......++....+.++...
T Consensus 263 ~~q~~G~P~~~GGP~~G~~a~~~~~~R~--~PGRiV~-~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~ 339 (471)
T d1wyub1 263 LHKTFTVPHGGGGPGSGPVGVKAHLAPY--LPVPLVE-RGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLE 339 (471)
T ss_dssp TTTTTCCCCTTSCCCCCCEEECGGGGGG--CCSCEEE-ECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccceeehhhhhcc--CCCceec-CCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCch
Confidence 888653 44558999999998886 3322210 0000 00112223444443333344456666654
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 317 EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 317 ~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
|++++.+++..+++|+.+.|+. +|+++..+... -.-+.+..+ .+.+..++.+.|.+ +|+..+..+.+
T Consensus 340 --GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~f-f~EFvv~~~------~~~~~~~i~k~L~~-~G~~~~~~~~p-- 406 (471)
T d1wyub1 340 --GLKKAAALAVLNARYLKELLKE-KGYRVPYDGPS-MHEFVAQPP------EGFRALDLAKGLLE-LGFHPPTVYFP-- 406 (471)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSC-CSCEEEBCS------TTCCHHHHHHHHHH-TTCCCCEESCS--
T ss_pred --hHHHHHHHHHHHHHHHHHHHhh-cCceeccCcce-eeEEeecCC------CCCCHHHHHHHHHH-cCCCCCcccCc--
Confidence 9999999999999999999976 68887554322 223344444 35677789999976 49976544333
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
....+.+-+++.-.+|.+|||+++++|++++++..
T Consensus 407 -------------~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~ 441 (471)
T d1wyub1 407 -------------LIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK 441 (471)
T ss_dssp -------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred -------------CCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 13356899999988999999999999999998754
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.73 E-value=9.9e-17 Score=158.88 Aligned_cols=336 Identities=14% Similarity=0.068 Sum_probs=186.7
Q ss_pred hhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE
Q 012991 78 LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS 157 (452)
Q Consensus 78 ~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~ 157 (452)
..+.+.++++++++++|. +.+++++|||+|+..++.++.....+ ....+..++....-|.+.... ....|..
T Consensus 73 ~~~~~~~le~~~a~l~g~---~~~~~~~sGt~A~~~a~~~~~~~g~~-~~~~~~~~i~~~~h~~t~~~~----~~~~g~~ 144 (465)
T d1ax4a_ 73 GSRNYYDLKDKAKELFNY---DYIIPAHQGRGAENILFPVLLKYKQK-EGKAKNPVFISNFHFDTTAAH----VELNGCK 144 (465)
T ss_dssp SCHHHHHHHHHHHHHHCC---CEEEEESSHHHHHHHHHHHHHHHHHH-TTCCSSCEEEESSCCHHHHHH----HHHTTCE
T ss_pred cChHHHHHHHHHHHHHCC---CEEEECCCcHHHHHHHHHHHHHHHHh-cCCCCCeEEeccchhhhhHHH----HHHcCCe
Confidence 345678899999999998 48999999999999999988532211 123334455554444433222 2445777
Q ss_pred EEEEeCCC------CCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcc-ccc---HHHHHHHHHHcCCCEEEE
Q 012991 158 VVEVQLPF------PLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCV-VIP---VRKLVKICRDEGVDQVFV 226 (452)
Q Consensus 158 v~~~~~~~------~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~-~~~---l~~i~~l~~~~~~~~~iv 226 (452)
+..+.... .....+.+ +++++++|++.. ...+.+++++..+|..|. ..| +++|.++|++||+ ++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~-~l~~ 221 (465)
T d1ax4a_ 145 AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI-FVVM 221 (465)
T ss_dssp EEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC-CEEE
T ss_pred eecccccccCCCCCCCCccCccCHHHHHHHHHhhc--cccccceeeccccccCceecCCHHHHHHHHHHHHHcCC-EEEE
Confidence 76654310 11123344 889999887531 235677777777776554 343 6788999999999 7999
Q ss_pred ecccccCCccc-----------ccc------ccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcc
Q 012991 227 DAAHAMGSIKI-----------DVK------EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLP 289 (452)
Q Consensus 227 D~a~~~g~~~~-----------~~~------~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (452)
|+++..+.... +.. ...+|++++|++|..+++. .|+++.++................+
T Consensus 222 D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~-~g~l~~~~~~~~~~~~~~~~~~~~~---- 296 (465)
T d1ax4a_ 222 DSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI-GGLVAIRDNEEIFTLARQRCVPMEG---- 296 (465)
T ss_dssp ECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS-CEEEEESSCHHHHHHHHHHHHHHTC----
T ss_pred ECcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc-ceeEeecchHHHHHhhhcccccccc----
Confidence 99986543211 000 0126899999999744444 5888887653321000000000000
Q ss_pred cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc--c
Q 012991 290 IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR--V 367 (452)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 367 (452)
.++.......++.++.....+. ..+...++..++.+++.+.|.+. ++.+..+.. ...+.+....... .
T Consensus 297 -----~~~~~~~~~~~~~a~~~~~~e~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~--~~~~~~~~~~~~~~~~ 366 (465)
T d1ax4a_ 297 -----FVTYGGLAGRDMAAMVQGLEEG--TEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTG--GHAVFVDCKKLVPQIP 366 (465)
T ss_dssp -----STTTTTCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCC--SSEEEEESTTTCTTSC
T ss_pred -----CCCcchhhHHHHHHHhhhhHHh--hhHHHHHHHHHHHHHHHHHHHhh-cCccccCCC--cceeeeehhhhcCCCc
Confidence 0111111212222222222221 22445556677789999999987 666665544 3333333211000 0
Q ss_pred CChhhHHHHHHHHhhhcceEeeeccc-CCCCCCCCCCCCCCC-CCCccceEEeccc-ccCCHHHHHHHHHHHHHHHhccc
Q 012991 368 MGEDDALRLRGHLRVRFGVEVPIHYQ-APKDDGQPQAGARDK-DGIITGYARISHQ-VYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 368 ~~~~~~~~l~~~L~~~~gI~v~~~~~-~~~~~~~~~~~~~~~-~~~~~~~iRis~~-~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
............+..+.||....... ..... ..... .....+.+|++++ ...|.+|||+++++|+++.++..
T Consensus 367 ~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~-----~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 367 GDQFPAQAVINALYLESGVRAVEIGSFLLGRD-----PATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp GGGCHHHHHHHHHHHHHCEECEEESHHHHCBC-----TTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred cccchhHHHHHHHHHhcCceeccccccccccc-----cccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11223344444444556987632111 10000 00000 0223458999865 33489999999999999987654
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.1e-17 Score=165.80 Aligned_cols=336 Identities=13% Similarity=0.068 Sum_probs=188.5
Q ss_pred hhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccC-CCCCCCEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 78 LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG-RFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 78 ~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~-~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
-.+...++++++++++|.+ .+++++|||+|+.+++.++.....+. .......|+.....|...... +...|.
T Consensus 72 ~~~~~~~le~~~a~l~G~~---~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~G~ 144 (467)
T d2v1pa1 72 GSRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH----SQINGC 144 (467)
T ss_dssp SCHHHHHHHHHHHHHTCCS---EEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH----HHHTTC
T ss_pred CCchHHHHHHHHHHHHCCC---EEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHH----HHHcCC
Confidence 3556788999999999994 78999999999999999885332111 112233455444444443222 344688
Q ss_pred EEEEEeCCCCC------CChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCc-ccc---cHHHHHHHHHHcCCCEEE
Q 012991 157 SVVEVQLPFPL------ASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPC-VVI---PVRKLVKICRDEGVDQVF 225 (452)
Q Consensus 157 ~v~~~~~~~~~------~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG-~~~---~l~~i~~l~~~~~~~~~i 225 (452)
.++.++.+... ...+.+ ++++++.++... ...+++|+++..++..| ... ++++|.++|++||+ ++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~-~l~ 221 (467)
T d2v1pa1 145 TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDI-PVV 221 (467)
T ss_dssp EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTC-CEE
T ss_pred eeeecccccccccccccccccCCCHHHHHHHHhhcC--ccccceeeecceeeccccccCCHHHHHHHHHHHHHcCC-EEE
Confidence 88887653111 011233 789998887431 24578888888877665 344 47788999999999 799
Q ss_pred EecccccCCccc------ccc-----------ccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCc
Q 012991 226 VDAAHAMGSIKI------DVK-----------EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGL 288 (452)
Q Consensus 226 vD~a~~~g~~~~------~~~-----------~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~ 288 (452)
+|+|+..+.... .+. ...+|++++|.+|.++++.| |+++.+++.+.. .........
T Consensus 222 ~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~~~~-~~~~~~~~~----- 294 (467)
T d2v1pa1 222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFD-VYTECRTLC----- 294 (467)
T ss_dssp EECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHH-HHHHHHHHH-----
T ss_pred EechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchhhhh-HHHhhcccc-----
Confidence 999987543210 000 11479999999998777765 888887766543 000000000
Q ss_pred ccccccccccCcc--ccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEE--cCCc
Q 012991 289 PIESAWIGTRDYS--AQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVG--LPSR 364 (452)
Q Consensus 289 ~~~~~~~~~~~~~--~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--~~~~ 364 (452)
....+.+... ...++.+....+... ..+.+.++..++.+++.+.|.+. +..+..... ...++... ++..
T Consensus 295 ---~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~-~~~~~~~~~~~~~~ 367 (467)
T d2v1pa1 295 ---VVQEGFPTYGGLEGGAMERLAVGLYDG--MNLDWLAYRIAQVQYLVDGLEEI-GVVCQQAGG-HAAFVDAGKLLPHI 367 (467)
T ss_dssp ---HHTTSSCCCCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHT-TCCEEEECS-SCEEEEHHHHSTTS
T ss_pred ---cccccCcchhhhHHHHHHHHHHHhHHh--hhHHHHHHHHHHHHHHHHHHHhc-CCcccCCCc-cceeecchhhcCCc
Confidence 0000111111 111222222222221 23456666788999999999886 444322211 11111111 1210
Q ss_pred cccCChhhHHHHHHHHhhhcceEeeecc-cCCCCCCCCCCCCCCCCCCccceEEecccc-cCCHHHHHHHHHHHHHHHhc
Q 012991 365 LRVMGEDDALRLRGHLRVRFGVEVPIHY-QAPKDDGQPQAGARDKDGIITGYARISHQV-YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 365 ~~~~~~~~~~~l~~~L~~~~gI~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~~di~~l~~~l~~~~~~ 442 (452)
.........+...|..+.||...... ......... .. ........+|++++. ..|.+|||+++++|+++.++
T Consensus 368 --~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~--~~--~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 368 --PADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKT--GK--QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp --CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT--CS--BCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred --chhhhhhHHHHHHHHHHcCCeeeccccccccccccc--CC--ccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 01122334444444455688652211 000000000 00 002335689999764 45999999999999999975
Q ss_pred c
Q 012991 443 G 443 (452)
Q Consensus 443 ~ 443 (452)
-
T Consensus 442 ~ 442 (467)
T d2v1pa1 442 A 442 (467)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.72 E-value=6e-16 Score=150.87 Aligned_cols=329 Identities=13% Similarity=0.088 Sum_probs=193.1
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.|.+++.+.+.... .. .........+.+.+.+..+. .+.+.|+++|++|++.++.. +|.+
T Consensus 66 lGh~hp~i~~ai~~~~~~~~----~~--~~~~~~~~~la~~~~~~~~~--~~~v~f~~sGseA~e~Alk~-ar~~----- 131 (427)
T d2gsaa_ 66 CGHAHPEVIEALKVAMEKGT----SF--GAPCALENVLAEMVNDAVPS--IEMVRFVNSGTEACMAVLRL-MRAY----- 131 (427)
T ss_dssp TCBTCHHHHHHHHHHHTTCS----CC--SSCCHHHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHH-HHHH-----
T ss_pred ccCCcHHHHHHHHHHHHhcC----cc--ccchhHHHHHHHHHHhhCCc--cccccccCCcHHHHHHHHHH-HHHh-----
Confidence 45677789999988775421 11 11123345567777777654 37889999999999999984 4433
Q ss_pred CCCCEEEEeCCcchhHHHHHHHH----HHhcCc------------EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAY----VTRAGG------------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~----a~~~g~------------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
..+.+|+.....|++.......+ ....+. ..... +..+ ++.+++.+++. ..++
T Consensus 132 t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~----~~~le~~~~~~---~~~i 200 (427)
T d2gsaa_ 132 TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTT----PYND----LEAVKALFAEN---PGEI 200 (427)
T ss_dssp HCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEE----CTTC----HHHHHHHHTTS---TTTE
T ss_pred cCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceecc----Ccch----HHHHHHHHHhC---CCCe
Confidence 34578998888887642211000 001111 11222 2222 68888888753 4678
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCcc----ccccccCccEEEEcCcccCcCCCCcEE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
.+|+++......|.+.| ++.|.++|++||+ ++|+|++++..-.. .+.....+|+++++ |.+.|+...|.
T Consensus 201 aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~-llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a 277 (427)
T d2gsaa_ 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDA-LLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGA 277 (427)
T ss_dssp EEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTC-EEEEECTTTBTTTBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEE
T ss_pred EEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhce-eeeeccccccceecccchHHhcCCCHHHHhhh--hccCCCcceee
Confidence 99999988888899887 9999999999999 89999998632111 11222368999998 66666555677
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
+++++++.+. + .+.... ..++.....-+++.+++..++.+ ..+.+.++++++.+++.+.|.++..
T Consensus 278 ~~~~~~i~~~-~-~~~~~~-----------~~~~T~~gnpla~AAala~Le~i--~~~~l~~~~~~~g~~l~~~L~~l~~ 342 (427)
T d2gsaa_ 278 YGGKREIMQL-V-APAGPM-----------YQAGTLSGNPLAMTAGIKTLELL--RQPGTYEYLDQITKRLSDGLLAIAQ 342 (427)
T ss_dssp EEECHHHHTT-B-TTTSSB-----------CCCCTTTTCHHHHHHHHHHHHHH--TSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHH-h-cccCCC-----------cCCCCCCCCchhhHHHHHhhHHh--hhhhHHhhhhHHHHHHHHHHHHHHh
Confidence 8888887765 2 211000 00111111223334444444433 2234567778888888888766521
Q ss_pred -CCcCCCcccccceEEEEcCCc--cc-----cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 344 -TSLGSPPEICAAMVMVGLPSR--LR-----VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 344 -~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
..+.......++++.+.+-+. .+ ..+......+...|.++ ||++++.. ...
T Consensus 343 ~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~-Gv~l~p~~--------------------~~~ 401 (427)
T d2gsaa_ 343 ETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQ--------------------FEA 401 (427)
T ss_dssp HTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST--------------------TSC
T ss_pred hcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHC-CEEECCCC--------------------Ccc
Confidence 111111112234444433110 00 00111124566677665 99875311 112
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+-++ ..+|++||+++++++++++++
T Consensus 402 ~~~~--l~~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 402 GFTS--LAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp EECC--TTCCHHHHHHHHHHHHHHHTC
T ss_pred eeCC--CCCCHHHHHHHHHHHHHHHHh
Confidence 2234 446999999999999998863
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.70 E-value=2e-15 Score=147.58 Aligned_cols=346 Identities=12% Similarity=0.106 Sum_probs=203.9
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|..++.+.+++.+.+.... ..... ...+...++.++|++...-. .+.+.|+++||+|++.++. ++|.+
T Consensus 55 lGh~~p~v~~ai~~q~~~~~-~~~~~---~~~~~~~~la~~L~~~~~~~-~~~v~f~~sGseA~e~Alk-~Ar~~----- 123 (431)
T d1zoda1 55 LGHCHPEIVSVIGEYAGKLD-HLFSE---MLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIR-MAKLV----- 123 (431)
T ss_dssp TCBTCHHHHHHHHHHHHHCC-CCCTT---CCCHHHHHHHHHHHHHSCTT-CCEEEEESCHHHHHHHHHH-HHHHH-----
T ss_pred hcCCCHHHHHHHHHHHhhcc-ccccc---cccHHHHHHHHHHHHhCCcc-cceeeecccccchHHHHHH-HHHHh-----
Confidence 56777889999999887632 11111 12334456777788877542 5799999999999999999 45544
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhc--------CcEEEEEeCCCCC--C-------ChHHHHHHHHHHHhccccCCCc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRA--------GGSVVEVQLPFPL--A-------SEEEIINEFKKGIEKGKKDGKM 190 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~--------g~~v~~~~~~~~~--~-------~~~~~~~~l~~~i~~~~~~~~~ 190 (452)
..+++|+.....|++............ ......++.+... . ......+.+...+.+. ...+
T Consensus 124 t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 201 (431)
T d1zoda1 124 TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGN 201 (431)
T ss_dssp HTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSC
T ss_pred cCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHh--cccc
Confidence 456788888888887654432210000 0112222221100 0 0011134444333321 1467
Q ss_pred eEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCccc----cccccCccEEEEcCcccCcCCCCc
Q 012991 191 IRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIKI----DVKEIGADFYVSNLHKWFFCPPSV 261 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~~----~~~~~~~d~~~~s~~K~l~g~~G~ 261 (452)
+.+|+++......|.+.+ +++|.++|++||+ ++|.|+++.. |-... ......+|+++++ |.+.|+.-.
T Consensus 202 iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gi-llI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p~ 278 (431)
T d1zoda1 202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGM-LLILDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPL 278 (431)
T ss_dssp EEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSC
T ss_pred ccceeeccccccCCccCCCHHHHHHHHHHHHhcCc-eEEeccccccccccccccccccCCCCcchhccc--ccccccccc
Confidence 899999998887788765 8899999999999 9999999873 43321 2223468999998 887766556
Q ss_pred EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 262 AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 262 G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
+.++++++.... +..... . ...+ .+.+..+..+..+.++.+.+ +.+.++..++.+++.+.+.++
T Consensus 279 ~av~~~~~~~~~-~~~~~~----~----~~~T--~~g~pl~~aaa~a~l~~i~~-----~~~~~~~~~~g~~l~~~l~~~ 342 (431)
T d1zoda1 279 AAIVTSAAIEER-AHELGY----L----FYTT--HVSDPLPAAVGLRVLDVVQR-----DGLVARANVMGDRLRRGLLDL 342 (431)
T ss_dssp EEEEECHHHHHH-HHHTTC----C----CCCT--TTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeecchhh-hhcccc----c----ccCC--CCCCcchHHHHHHHHHHhhh-----hhhhHHHHHHHHHHhhhhhhh
Confidence 777777665543 100000 0 0000 11122222333344555543 445666777777777766553
Q ss_pred c-CCCcCCCcccccceEEEEcCC--ccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 342 W-GTSLGSPPEICAAMVMVGLPS--RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 342 ~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
. ...++......+.++.+.+.. ........-...+.+.+.++ |+........ ..++.||+
T Consensus 343 ~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~-Gl~~~~~~~~----------------~~~~~i~l 405 (431)
T d1zoda1 343 MERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNL-GLSMNIVQLP----------------GMGGVFRI 405 (431)
T ss_dssp HHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHT-TEECCEECCT----------------TSCCEEEE
T ss_pred hhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHh-CcccCeeeec----------------CCCCEEEE
Confidence 1 122222222335555554411 00000112245677888764 9875432221 23568999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++...|++||+.++++|.+.+++
T Consensus 406 ~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 406 APPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999888999999999999999875
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.69 E-value=2.5e-15 Score=147.68 Aligned_cols=339 Identities=15% Similarity=0.135 Sum_probs=201.0
Q ss_pred CCCCcHHHHHHHHHHHHHHh--cCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccc--
Q 012991 48 FGSCPKSVLADQQKWQLKFL--QQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT-- 123 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~-- 123 (452)
.|...+.|.+++.+.+.... ..+.. .........+++.+.+.+..+.+ .+.++|+++|++|++.++... +.|.
T Consensus 67 lGh~~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~~a~~lae~l~~~~~~~-~~~v~f~~sGseAve~Aik~A-r~~~~~ 143 (461)
T d1ohwa_ 67 IGYSHPALVKLVQQPQNVSTFINRPAL-GILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENAFKTI-FMWYRS 143 (461)
T ss_dssp SCBTCHHHHHHHHCGGGHHHHHCCCCT-TTSCBTTHHHHHHHTGGGGCCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHH
T ss_pred hcCCcHHHHHHHHHHHhhhhhcccccc-cccchHHHHHHHHHHHHhhhccC-cceeeeecchhhhhHHHHHHH-HHHhhh
Confidence 46777779999987654321 11111 11122334556666666666554 578999999999999998844 3221
Q ss_pred -------------------cCCCCCCCEEEEeCCcchhHHHHHHHHH-----Hhc---CcEEEEEeC---CCCCCC----
Q 012991 124 -------------------EGRFHRNDTVLMLHCAFQAVKKSIQAYV-----TRA---GGSVVEVQL---PFPLAS---- 169 (452)
Q Consensus 124 -------------------~~~~~~g~~Vl~~~~~~~s~~~~~~~~a-----~~~---g~~v~~~~~---~~~~~~---- 169 (452)
.....++.+|+....+||+.......+. ... .......+. ..+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (461)
T d1ohwa_ 144 KERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKE 223 (461)
T ss_dssp HHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHH
T ss_pred cccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccc
Confidence 0112334589998888887544332210 000 001111111 011110
Q ss_pred ---hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc--cc
Q 012991 170 ---EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK--ID 238 (452)
Q Consensus 170 ---~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~~ 238 (452)
.... .+.+++.+.....+..++.+|+++......|.+.+ +++|.++|++||+ ++|+|++++ +|-.. +.
T Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gi-llI~DEV~tG~gRtG~~~~ 302 (461)
T d1ohwa_ 224 NQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC-AFLVDEVQTGGGSTGKFWA 302 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTC-EEEEECTTTCSSTTSSSSG
T ss_pred cchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCc-ceecccccccccccccccc
Confidence 0112 55666666543334678999999999888888754 7899999999999 999999985 43221 11
Q ss_pred cc--cc--CccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH
Q 012991 239 VK--EI--GADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314 (452)
Q Consensus 239 ~~--~~--~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 314 (452)
.. .. .+|+++++ |.+.+ |...... .+.. ..+.. ...++.++ ..+..+..++++.+.
T Consensus 303 ~e~~gi~~~PDiv~~g--K~l~~----g~~~~~~-~~~~--~~~~~---------~~~T~~g~--p~~~aaa~a~l~~i~ 362 (461)
T d1ohwa_ 303 HEHWGLDDPADVMTFS--KKMMT----GGFFHKE-EFRP--NAPYR---------IFNTWLGD--PSKNLLLAEVINIIK 362 (461)
T ss_dssp GGGGCCSSCCSEEEEC--GGGSS----EEEEECG-GGSC--SSTTS---------SCCSCSSC--HHHHHHHHHHHHHHH
T ss_pred ccccccccCchhhhhh--hcccc----ccccccc-cccc--ccccc---------cccccccc--cccchhhcccchhhh
Confidence 11 22 37999877 87532 3333332 2222 11110 01111122 223333444555555
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcC-C-CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecc
Q 012991 315 RFEGGIDGIMQRNHEQALKMARMLANAWG-T-SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHY 392 (452)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~ 392 (452)
+ +.+.+++.++.+++.+.|.++.. . .++......+.++.+.++ +.....++.+.+.++ |+.+...
T Consensus 363 ~-----~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~~------~~~~~~~i~~~~~~~-Gll~~~~- 429 (461)
T d1ohwa_ 363 R-----EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP------DESIRNKLISIARNK-GVMLGGC- 429 (461)
T ss_dssp H-----TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS------SHHHHHHHHHHHHHT-TEECEEE-
T ss_pred h-----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEEEEcC------CHHHHHHHHHHHHHC-CeEEeeC-
Confidence 3 34677788888888888877532 1 122222344677788886 344566888888775 9988532
Q ss_pred cCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 393 QAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++.||+.++...|++|++.++++|.+++.+
T Consensus 430 -------------------~~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 430 -------------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp -------------------TTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -------------------CCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 2368999998888999999999999999876
|