Citrus Sinensis ID: 013008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
Protein Sequence
MQNAMSSTFQAPLQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNSN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccEEcccccEEEEccccEEEEccccHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHcccccccccccccccccccEEEEcccHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHccEEEEEccccccccccHHHHHHcccccccHHHHccccccccHHHHHcccHHHHccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccEEEEccccEEEcEEEcccHHHHHHHHHHcccEEEEcccccEEEEcccccccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccHccccccHHHHHcccccccccccccHcccccccccccccccccccccccHHHHHHHHHHccccccccccEEEEEccEEEEEcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccHHHHHccccHHHHcccccccccEEEEccccHHHHHHHcccccEEEEEEcccEcccccEcccccHHHHHHHHHHHcccEEEEEcccccccccccccHHHHHcccccEEEEcHHHHcccccEEEEEcHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcHHHHcccEEEEcccEEEEEEEEcccHHHHHHHHHHccEEEEEcccccEEEEccccEEcHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqnamsstfqaplqvplsqsgnlrrqikfngvkrrpmvAAASVNvevndaargsagglgrnnKEVMEAEKKLLVGtynrapvvlasgkgcklydaegreyldlssgiavnalghgdaDWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAdrvffsntgtEANEAAIKFARKFqrhsnpdskepatefvsftnsfhgrTMGALALtskehyrspfepvmpgvnfveygnieatrkliqpgktaavfvepiqgeggiySATKEFLQFLRDACDDAGALLVFDEvqcglgrtgylwahehygifpdimtlakplagglpigAALVTEKVASAinygdhgstfagsplvCNAAIAVLDkisnpaflasklarnphvkdvrglGLIIGiefdvsatpvvdacrdsgllvltagkgnvvrlvppliisEQELDQAVEILCKtlpvldsnsn
Flexible Loop (DISEMBL)
mqnamsstfqaplqvplsqsgnlrRQIKFNGVKRRPMVaaasvnvevndaargsagglgrnnkEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQrhsnpdskepatEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAsklarnphvkDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCktlpvldsnsn
Low Complexity Region (SEG)
MQNAMSSTFQAPLQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNSN
Disordered region (IsUnstruct)
*********************************************************************KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKF******************FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL*****
Disordered Region (DISOPRED)
*****************************************************************MEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD****
Disordered Region (DISEMBL)
************LQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF***********ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNSN
Disordered Region (DISPRO)
*****************SQ**N**************************************NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQNAMSSTFQAPLQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	451	2.2.26 [Sep-21-2011]
O04866	451	Acetylornithine aminotran	N/A	no	0.913	0.913	0.722	0.0
Q9M8M7	457	Acetylornithine aminotran	yes	no	0.962	0.949	0.660	1e-177
Q55DT8	453	Probable acetylornithine	yes	no	0.860	0.856	0.441	2e-96
Q58131	398	Acetylornithine aminotran	yes	no	0.818	0.927	0.458	1e-94
Q9X2A5	385	Acetylornithine aminotran	yes	no	0.807	0.945	0.465	2e-92
Q97GH9	387	Acetylornithine aminotran	yes	no	0.809	0.943	0.449	2e-90
Q6C846	411	Acetylornithine aminotran	yes	no	0.831	0.912	0.433	6e-89
O30156	375	Acetylornithine aminotran	yes	no	0.800	0.962	0.446	1e-88
Q8R7C1	393	Acetylornithine aminotran	yes	no	0.818	0.938	0.433	5e-87
O27392	390	Acetylornithine aminotran	yes	no	0.813	0.941	0.431	2e-86

>sp|O04866|ARGD_ALNGL Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1

 Score =  635 bits (1639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/429 (72%), Positives = 354/429 (82%), Gaps = 17/429 (3%)

Query: 35  RPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYD 94
           R +  +A  NVEV   +     G+   +KEVMEA  ++LVGTY R PVVL+ GKGCKLYD
Sbjct: 25  RHLQVSACANVEVQAPSSVKKQGV---SKEVMEAAGRVLVGTYARVPVVLSRGKGCKLYD 81

Query: 95  AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF 154
            EGREYLDLS+GIAVN LGH D+DW++AV +QA  LTHVSN++YSIPQ+ELAKRLVA SF
Sbjct: 82  PEGREYLDLSAGIAVNVLGHADSDWLRAVTEQAATLTHVSNVFYSIPQVELAKRLVASSF 141

Query: 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
           ADRVFFSN+GTEANEAAIKFARKFQR + PD K+PATEFVSF+NSFHGRTMG+LALTSKE
Sbjct: 142 ADRVFFSNSGTEANEAAIKFARKFQRFTRPDEKQPATEFVSFSNSFHGRTMGSLALTSKE 201

Query: 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274
           +YRSPFEPVMPGV F+EYGNIEA  +LIQ  K AAVFVEPIQGEGG+YSATKEFL  LR 
Sbjct: 202 NYRSPFEPVMPGVTFLEYGNIEAATQLIQRRKIAAVFVEPIQGEGGVYSATKEFLYALRK 261

Query: 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVAS 334
           ACDD+G LLVFDEVQCGLGRTGYLWAHE Y +FPDIMTLAKPLAGGLPIGA LVTE+VAS
Sbjct: 262 ACDDSGTLLVFDEVQCGLGRTGYLWAHEIYDVFPDIMTLAKPLAGGLPIGAVLVTERVAS 321

Query: 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKD 380
           AI YGDHG+TFAG PLVC AA+ VLDKI  P FLAS              KL  N HV++
Sbjct: 322 AITYGDHGTTFAGGPLVCKAALTVLDKILRPGFLASVSKKGHYFKEMLINKLGGNSHVRE 381

Query: 381 VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
           VRG+GLI+GIE DVSA+P+V+AC +SGLLVLTAGKGNVVR+VPPLII+EQEL++A EIL 
Sbjct: 382 VRGVGLIVGIELDVSASPLVNACLNSGLLVLTAGKGNVVRIVPPLIITEQELEKAAEILL 441

Query: 441 KTLPVLDSN 449
           + LP LD +
Sbjct: 442 QCLPALDRH 450

Involved in the biosynthesis of citrulline.
Alnus glutinosa (taxid: 3517)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 1

>sp|Q9M8M7|ARGD_ARATH Acetylornithine aminotransferase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=WIN1 PE=1 SV=1

 Score =  620 bits (1600), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 308/466 (66%), Positives = 369/466 (79%), Gaps = 32/466 (6%)

Query: 5   MSSTFQAPL-QVPLSQSGNLRRQIKFNGVKRRPMVAA--------ASVNVEVNDAARGSA 55
           M+S  Q  L + P S+ G LRR+++      RP++          ASV     D A    
Sbjct: 1   MASLSQITLPRAPSSEIGLLRRRLE------RPIIRTRIGFNGRIASVLTNAGDQAVSVK 54

Query: 56  GGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG 115
             +   +++V+E E K++VGTY RAPVVL+SGKGCKL+D EG+EYLD +SGIAVNALGHG
Sbjct: 55  ASV---SQKVIEEEAKVIVGTYARAPVVLSSGKGCKLFDPEGKEYLDCASGIAVNALGHG 111

Query: 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175
           D DW++AV +QA VL HVSN+YY+IPQIELAKRLVA SFADRVFF N+GTEANEAAIKF+
Sbjct: 112 DPDWLRAVTEQAGVLAHVSNVYYTIPQIELAKRLVASSFADRVFFCNSGTEANEAAIKFS 171

Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235
           RKFQR ++P+ KE AT F++FTNSFHGRT+GALALTSKE YR+PFEP+MPGV F+EYGNI
Sbjct: 172 RKFQRFTHPEDKEVATGFIAFTNSFHGRTLGALALTSKEQYRTPFEPIMPGVTFLEYGNI 231

Query: 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
           +A   LI+ GK AAVFVEPIQGEGGIYSATKEFLQ LR ACD AG+LLVFDEVQCGLGRT
Sbjct: 232 QAATDLIRSGKIAAVFVEPIQGEGGIYSATKEFLQSLRSACDAAGSLLVFDEVQCGLGRT 291

Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAA 355
           G +WA+E +G+ PDIMT+AKPLAGGLPIGA LVTEKVA  INYGDHGSTFAGSPLVC+AA
Sbjct: 292 GLMWAYEAFGVTPDIMTVAKPLAGGLPIGAVLVTEKVAETINYGDHGSTFAGSPLVCSAA 351

Query: 356 IAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVD 401
           IAV+DK+S P+FL+S              KL  N HVK+VRG GLIIG+E DV A+ +VD
Sbjct: 352 IAVMDKVSKPSFLSSVSNKGRYFRDLLVKKLGGNSHVKEVRGEGLIIGVELDVPASSLVD 411

Query: 402 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447
           ACRDSGLL+LTAGKGNVVR+VPPL+ISE+E+++AVEI+ + L  LD
Sbjct: 412 ACRDSGLLILTAGKGNVVRIVPPLVISEEEIERAVEIMSQNLTALD 457

Involved in the biosynthesis of citrulline (By similarity). Essential gene that modulates defense response to pathogenic bacteria, conferring susceptibility and repressing salicylic acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q55DT8|ARGD_DICDI Probable acetylornithine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=argD PE=3 SV=1

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 184/417 (44%), Positives = 265/417 (63%), Gaps = 29/417 (6%)

Query: 58  LGRNNKE----VMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNAL 112
           L R+NK+     ++    +++ TY R + +V   GK   LYD +G +YLD  +GIAVNAL
Sbjct: 39  LDRDNKDGTSDYIKLHDNVIMNTYGRVSDIVFTHGKDSWLYDMKGDKYLDFGAGIAVNAL 98

Query: 113 GHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAA 171
           GH +  W + V +Q+  LTH+SN+YY+ P IELA+ ++A +   D+VFF+N+GTEANEAA
Sbjct: 99  GHSNDGWSEVVANQSKKLTHLSNLYYNQPAIELAQSMIASTPIFDKVFFANSGTEANEAA 158

Query: 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231
           +KFA+K         K    E ++F++ F GR+MG+L+ T K  YR  + P++PGV+F E
Sbjct: 159 LKFAKKIGIAKGGVDKH---EIIAFSHGFSGRSMGSLSCTHKSKYREIYGPLVPGVHFAE 215

Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
           Y +IE+ +KL+   KT AV +EP+QGEGG+ +AT EF+Q L   C +   LL+ DEVQCG
Sbjct: 216 YNDIESVKKLMSKSKTCAVIIEPVQGEGGLEAATVEFMQQLYKLCKENDCLLIVDEVQCG 275

Query: 292 LGRTGYLWAHEHYGI---FPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGS 348
           +GRTG LWAH  +      PDIMTLAKPLAGGLPIGA LV++KVAS I  GDHG+TF G 
Sbjct: 276 IGRTGQLWAHTRFDTEKCKPDIMTLAKPLAGGLPIGAVLVSDKVASEIKPGDHGTTFGGG 335

Query: 349 PLVCNAAIAVLDKISNPAFLASKLARNPHVKD---------------VRGL-GLIIGIEF 392
           PLVC     V ++IS P+FL     +  ++ D               +R + GL +GI+ 
Sbjct: 336 PLVCEVGKYVFERISQPSFLKEVQEKGKYLTDGLKKLKDQFPNSILEIRTVGGLFVGIQL 395

Query: 393 DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449
           D + + +V   +   +L++ AG  +V+R  PPL I++QE+DQ + +L   L  ++SN
Sbjct: 396 DHNVSDLVSYAKSQKILIINAGD-DVIRFCPPLTITKQEIDQLLLVLKNYLIKVNSN 451

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q58131|ARGD_METJA Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=argD PE=3 SV=1

 Score =  347 bits (890), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 178/388 (45%), Positives = 252/388 (64%), Gaps = 19/388 (4%)

Query: 66  MEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD 125
           ++ EKK  +  Y R PVVL  GKG ++YD +G++YLD  +GI VN +GH     ++A+  
Sbjct: 7   IDLEKKYHLQIYGRLPVVLVEGKGMEVYDIDGKKYLDFLAGIGVNNVGHCHPKVVEAIKK 66

Query: 126 QANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPD 185
           QA  L H SN+YY+IPQI+LAK+LV  S  DR FF N+G EANE AIKFARK+   S   
Sbjct: 67  QAETLIHTSNIYYTIPQIKLAKKLVELSGLDRAFFCNSGAEANEGAIKFARKYV--SKVL 124

Query: 186 SKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245
            +E   E +S  N+FHGRT+  LA T K  Y+  F P+ PG  +V + +IEA ++ I   
Sbjct: 125 GRE-GGEIISMYNAFHGRTLTTLAATPKPKYQDGFYPLPPGFKYVPFNDIEALKEAITD- 182

Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
           KTAA+ +EP+QGEGGI+ A K++L+ +RD CDD   +L+FDEVQCG+GRTG ++A EHYG
Sbjct: 183 KTAAIMIEPVQGEGGIHVADKDYLKAVRDLCDDKNIVLIFDEVQCGMGRTGRMFAFEHYG 242

Query: 306 IFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL------ 359
           + PDI+TLAK L GG+PIGA ++ E++A A++YGDHG+TF G+PL C+AA+A +      
Sbjct: 243 VEPDILTLAKALGGGVPIGAVVLKEEIAKALSYGDHGTTFGGNPLACSAALASVEVIEEL 302

Query: 360 ---DK-ISNPAFLASKL----ARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVL 411
              DK I    +   KL     +   +K+VRGLGL+IG E + +   +V    + G L+ 
Sbjct: 303 IKDDKVIEKGKYFIRKLENLIEKYNFIKEVRGLGLMIGAELEFNGADIVKKMLEKGFLI- 361

Query: 412 TAGKGNVVRLVPPLIISEQELDQAVEIL 439
                 V+R +PPLI+ ++ +D  +  L
Sbjct: 362 NCTSDTVLRFLPPLIVEKEHIDALINAL 389

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q9X2A5|ARGD_THEMA Acetylornithine aminotransferase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=argD PE=1 SV=1

 Score =  340 bits (871), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/387 (46%), Positives = 244/387 (63%), Gaps = 23/387 (5%)

Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           L+ TY+R P     GKG  +YD +G  YLD +SGIAVN LGH     ++A+ DQA  L H
Sbjct: 3   LMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 62

Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
            SN++++ PQ+ELA+ L   +F  +VFF+NTGTEANEAAIK ARK          E    
Sbjct: 63  CSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARK----YGKKKSEKKYR 118

Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
            +S  NSFHGRT+G+L  T +  Y+ PFEP++PG  + E+ N+E  R+ +      AVF+
Sbjct: 119 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFL 177

Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
           EPIQGE GI  ATKEFL+  R  CD+  ALLVFDEVQCG+GRTG L+A++ YG+ PD++T
Sbjct: 178 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT 237

Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKL 372
            AK L GG+PIGA +V E+ A+ +  GDHG+TF G+PL C A + V+ +++   FL    
Sbjct: 238 TAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE 296

Query: 373 ARNPH--------------VKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKG 416
            +  +              V DVRG+GL+IGI+F  +VS   V   C ++ LLV+ AG  
Sbjct: 297 EKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGN- 355

Query: 417 NVVRLVPPLIISEQELDQAVEILCKTL 443
           N +R +PPL +   E+D AVE L K L
Sbjct: 356 NTIRFLPPLTVEYGEIDLAVETLKKVL 382

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q97GH9|ARGD_CLOAB Acetylornithine aminotransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=argD PE=3 SV=1

 Score =  332 bits (852), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/385 (44%), Positives = 247/385 (64%), Gaps = 20/385 (5%)

Query: 70  KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV 129
           K  L+ TY R  V    G+G KLYD +G EY+D  SG+AVN LGH +   +KA+ +Q++ 
Sbjct: 3   KSYLMNTYGRFNVTFDKGEGTKLYDKDGNEYIDFVSGVAVNCLGHCNPSIVKAIEEQSSK 62

Query: 130 LTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
           L HVSN Y++   +EL + L   S  D+VF  N+GTEA EA +K ARK+      ++K+ 
Sbjct: 63  LMHVSNYYWNENAMELTEILCKNSEFDKVFMCNSGTEAIEAGLKLARKYALLHGDENKK- 121

Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249
             E +   NSFHGRTMGAL++T +  Y+  F+P++  V  V++ +++  ++ I   KTAA
Sbjct: 122 --EIIYMDNSFHGRTMGALSVTGQPKYQESFKPLIGAVKSVKFNDLDDIKQKISS-KTAA 178

Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
           V VEPIQGEGGI  A KE+L+ LRD CD+  ALL+FDEVQCG+GR G L+A++ + + PD
Sbjct: 179 VIVEPIQGEGGIIPAKKEYLKLLRDLCDENNALLIFDEVQCGMGRVGSLFAYQKFEVVPD 238

Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP---- 365
           I+ +AK L GG PIGA L  E VAS+   GDHG+T+ G+PL C  AIAVL ++ +     
Sbjct: 239 IVCIAKALGGGFPIGAMLAKESVASSFVPGDHGNTYGGNPLACAVAIAVLKELVDKKVVE 298

Query: 366 -------AFLASKLA----RNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG 414
                   +L  KL     +   + DVRG+GL+IG+E       +++ C +S LL++TAG
Sbjct: 299 INVNEKSKYLFDKLMTLKEKYKVINDVRGMGLLIGVEVACDVKKIINKCFESKLLLITAG 358

Query: 415 KGNVVRLVPPLIISEQELDQAVEIL 439
           K NVVR +PPL +S +E+D+A+ I 
Sbjct: 359 K-NVVRFLPPLNVSFEEIDKALGIF 382

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q6C846|ARGD_YARLI Acetylornithine aminotransferase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ARG8 PE=3 SV=1

 Score =  328 bits (841), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 176/406 (43%), Positives = 251/406 (61%), Gaps = 31/406 (7%)

Query: 60  RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           R    +++  +K  V TY +  V+L  GKG  L+D+   +Y+D S+GIAV ALGH + + 
Sbjct: 8   RQYSTLLQTAEKYSVPTYAKPSVILTKGKGAYLWDSNDNKYIDFSAGIAVTALGHSNPEI 67

Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-------ADRVFFSNTGTEANEAAI 172
            K + +Q++ L H SN++ +     L + LV  +        A +VF +N+GTEANEAA+
Sbjct: 68  TKILAEQSSQLMHCSNLFNNEWAPRLQESLVEETLKSGGMKGARKVFLANSGTEANEAAL 127

Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232
           KFARK    S+PD     TEFV+F  +FHGRTMGAL++T    Y++PF P++PGV    Y
Sbjct: 128 KFARKVGTLSSPDK----TEFVNFEKAFHGRTMGALSVTPNPKYQAPFAPLVPGVKTGVY 183

Query: 233 GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
            + +A   + +  KT  V VEP+QGEGG+Y A  EFLQ LR+ CD+ GA+L+FDE+QCGL
Sbjct: 184 NDPKAADLITE--KTCGVIVEPVQGEGGVYKANDEFLQALRNKCDEVGAMLIFDEIQCGL 241

Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352
           GRTG LWAH+   + PDI+T+AK L  G PIGA +VTE VA  I  GDHG+T+ G+PL  
Sbjct: 242 GRTGRLWAHDK--VHPDILTMAKALGNGFPIGATMVTEAVADKIAIGDHGTTYGGNPLAS 299

Query: 353 NAAIAVLDKISNPAFLASKLARNPHVKD---------------VRGLGLIIGIEFDVSAT 397
                VL ++++   L +    +  ++D               VRG GL++GI+F    +
Sbjct: 300 RVGHYVLSQVASKEVLDNVKKVSQQIRDAVAEVQEEFPELITEVRGDGLLLGIQFSKDPS 359

Query: 398 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
            VV A R++GLLV+TAG  N VRLVP L I ++ + + +EIL K +
Sbjct: 360 KVVAAARENGLLVITAGT-NTVRLVPALNIDQEAVTEGLEILKKAI 404

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|O30156|ARGD_ARCFU Acetylornithine aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=argD PE=3 SV=1

 Score =  327 bits (838), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 171/383 (44%), Positives = 245/383 (63%), Gaps = 22/383 (5%)

Query: 66  MEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD 125
           +E EKK ++ TY R  VV+  G+GC +YD  G+ YLDL +GIA  ++GH ++  ++ + +
Sbjct: 4   IEREKKHILQTYTRQKVVIERGEGCYVYDVNGKRYLDLVAGIATVSIGHCNSHLVERLKE 63

Query: 126 QANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPD 185
           Q   L H+SN+YY+ PQ+ELA++L   +  DR FF N+G EA EAA+KFAR+        
Sbjct: 64  QLEKLIHISNLYYTTPQVELAEKLSEIAGMDRFFFCNSGAEAVEAALKFARRATGRKK-- 121

Query: 186 SKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245
                  FVSFT  FHGRTMGAL++T KE +R PFEP++  V F E+ N E+  K++   
Sbjct: 122 -------FVSFTGDFHGRTMGALSVTHKEKFRKPFEPLVSPVEFAEFNNPESLEKVVDE- 173

Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
           +TAAV VE +QGE G+Y A +EF++ + +  +  G LL+ DEVQ G GRTG  +A +HYG
Sbjct: 174 ETAAVIVELVQGEAGVYPADREFVKAIEELREKYGFLLIVDEVQTGFGRTGRWFAKDHYG 233

Query: 306 IFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI--- 362
           I PD++T+AK +  G+PIG   + E+VA  I  GDHGSTF G+PL C AA+A ++ I   
Sbjct: 234 IEPDMITMAKAMGSGVPIGCCALKEEVAEKIQVGDHGSTFGGNPLACTAALATIEVIERE 293

Query: 363 ---SNPAFLASKLAR--NPHVKDVRGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAGKG 416
               N A +     +      ++V G+GL+IG  FDV  A   V  C ++GLLV    + 
Sbjct: 294 GLVENSARMGEYFVKRLKESFENVIGVGLMIG--FDVGDAAEFVRKCLENGLLVNNTSER 351

Query: 417 NVVRLVPPLIISEQELDQAVEIL 439
             +RLVPPL+I+E+E+D+AVEI+
Sbjct: 352 R-IRLVPPLVITEREVDKAVEIM 373

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q8R7C1|ARGD_THETN Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=argD PE=3 SV=1

 Score =  322 bits (824), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 169/390 (43%), Positives = 242/390 (62%), Gaps = 21/390 (5%)

Query: 69  EKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQAN 128
           EKK L+ TYNR P++L  G+G +++D+EG  YLD  +GIAVN+LGH     ++A+  QA 
Sbjct: 5   EKKYLMDTYNRYPIMLVKGEGTRVWDSEGNAYLDFVAGIAVNSLGHCHPALVEAIKKQAE 64

Query: 129 VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
            L H SN+Y++  QIELA+ +   SF  +VFF+N+G EANE AIK ARK+        + 
Sbjct: 65  TLIHCSNLYWNEKQIELARMISENSFGGKVFFANSGAEANEGAIKLARKYASLKYGGKR- 123

Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
              + ++  NSFHGRT GAL  T +E Y   F P++ G  +V   +IEA  + +   +  
Sbjct: 124 --YKIITAKNSFHGRTFGALTATGQEKYHKGFGPLLAGFKYVPLNDIEALYEAVDD-EVC 180

Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
           A+ +E IQGEGGI+ AT E+++ +R  CD+   L + DEVQ G+GRTG L+ +EHYG+ P
Sbjct: 181 AIMLEVIQGEGGIHEATPEYVKAVRKICDENDLLFILDEVQTGIGRTGKLFGYEHYGVVP 240

Query: 309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368
           DIMTLAK L GG PIGA +  E  A     GDH STF G+PL C A IAVL++++   FL
Sbjct: 241 DIMTLAKGLGGGFPIGAIVAKEDKA-VFKPGDHASTFGGNPLACAAGIAVLNEVTKDGFL 299

Query: 369 ASKLARNPH--------------VKDVRGLGLIIGIEFDVS-ATPVVDACRDSGLLVLTA 413
                +  +              VK++RG GL++G E D+  A+ +V    + GLL+ + 
Sbjct: 300 EGVDKKGKYFREGLETLQKKHKVVKEIRGKGLMVGCEVDLEDASEIVLKALEKGLLINSV 359

Query: 414 GKGNVVRLVPPLIISEQELDQAVEILCKTL 443
              NV+R VPPLI++E+E+D+A++IL   L
Sbjct: 360 SH-NVLRFVPPLIVTEEEIDEALQILDDVL 388

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|O27392|ARGD_METTH Acetylornithine aminotransferase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=argD PE=3 SV=1

 Score =  319 bits (818), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/394 (43%), Positives = 246/394 (62%), Gaps = 27/394 (6%)

Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
           +++E++E E+K ++ TY R P+VL+ GKG  ++D EG  Y+D  +G+AVN++GH      
Sbjct: 2   DSEEIIELERKFIMQTYTRQPIVLSHGKGATVWDIEGNSYIDCFAGVAVNSIGHAHPKVA 61

Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
            A+  QA  L H SN+YY+  Q+ELAK L A S  DRVFF+N+G EANE AIK ARKF  
Sbjct: 62  LAICHQAQRLIHSSNIYYTREQVELAKLLTAISPHDRVFFANSGAEANEGAIKLARKFTG 121

Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
            S         E ++  NSFHGRT+  +  T ++ Y  PF P+  G   V YG+I A   
Sbjct: 122 KS---------EIIAAENSFHGRTLATVTATGQKKYSEPFRPLPEGFKHVPYGDIGAMAD 172

Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
            +   +TAA+ +EP+QGEGG+    + +L+ +++       LL+ DEVQ G GRTG ++A
Sbjct: 173 AVGD-ETAAIILEPVQGEGGVIIPPEGYLKDVQELARQNDVLLILDEVQTGFGRTGAMFA 231

Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
            + +G+ PDI T+AK + GG PIGA L  E+VA A   GDHGSTF G+P  C AAIA ++
Sbjct: 232 SQLFGVEPDITTVAKAMGGGYPIGAVLANERVAMAFEPGDHGSTFGGNPWGCAAAIATIE 291

Query: 361 KISNP----------AFLASKLARNPH----VKDVRGLGLIIGIEFDVSATPVVDACRDS 406
            + +           ++   +L +  H    V+D+RG+GL+IGIE D     VVDA R+ 
Sbjct: 292 VLMDEKLPERAAKMGSYFLGRLRQVLHGCDAVRDIRGVGLMIGIEIDGECAGVVDAAREM 351

Query: 407 GLLV-LTAGKGNVVRLVPPLIISEQELDQAVEIL 439
           G+L+  TAGK  V+R+VPPL+I ++E+D AV++L
Sbjct: 352 GVLINCTAGK--VIRIVPPLVIKKEEIDAAVDVL 383

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
255544652	470	acetylornithine aminotransferase, putati	0.993	0.953	0.730	0.0
225465060	467	PREDICTED: acetylornithine aminotransfer	0.964	0.931	0.732	0.0
118486369	452	unknown [Populus trichocarpa] gi|1184870	0.966	0.964	0.698	0.0
225443065	463	PREDICTED: acetylornithine aminotransfer	0.986	0.961	0.713	0.0
224140799	398	predicted protein [Populus trichocarpa]	0.851	0.964	0.779	0.0
224083964	394	predicted protein [Populus trichocarpa]	0.840	0.961	0.786	0.0
2811029	451	RecName: Full=Acetylornithine aminotrans	0.913	0.913	0.722	1e-180
356536077	463	PREDICTED: acetylornithine aminotransfer	0.911	0.887	0.717	1e-179
356520746	467	PREDICTED: acetylornithine aminotransfer	0.971	0.937	0.672	1e-178
217072680	470	unknown [Medicago truncatula]	0.866	0.831	0.730	1e-175

>gi|255544652|ref|XP_002513387.1| acetylornithine aminotransferase, putative [Ricinus communis] gi|223547295|gb|EEF48790.1| acetylornithine aminotransferase, putative [Ricinus communis]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/468 (73%), Positives = 385/468 (82%), Gaps = 20/468 (4%)

Query: 1   MQNAMSSTFQAP--LQVPLSQSGNLRRQI-KFNGVKRRPMVAAASVNVEVNDAARGSAGG 57
           M    ++T   P  L+   SQ    R QI +FNG   R  +A A +NV+V         G
Sbjct: 5   MHICSNTTISHPINLRCLFSQDRRGRPQIIRFNG---RKSIATACLNVDVRAQNSDGKVG 61

Query: 58  LGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
           + R +KEVMEAE K +VGTY RAPVVLASGKGCKLYD EGREYLD++SGIAVNALGH D 
Sbjct: 62  VVRESKEVMEAEGKFMVGTYARAPVVLASGKGCKLYDVEGREYLDMTSGIAVNALGHCDP 121

Query: 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177
           DW+KAVVDQA+VLTHVSN+YYSIPQ+ELAK LVACSFADRVFF+N+GTEANEAA+KFARK
Sbjct: 122 DWVKAVVDQADVLTHVSNVYYSIPQVELAKHLVACSFADRVFFTNSGTEANEAAMKFARK 181

Query: 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237
           +QRHSNP++ EPATEF+SF+N FHGRTMGALALTSKE YRSPFEP++PGV FVEYGNIEA
Sbjct: 182 YQRHSNPNAAEPATEFISFSNCFHGRTMGALALTSKEQYRSPFEPLVPGVTFVEYGNIEA 241

Query: 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
           TRKLIQ GKTAAVFVEPIQGEGGIYSATKEFL+FLR ACDDAGALLVFDEVQCGLGRTGY
Sbjct: 242 TRKLIQRGKTAAVFVEPIQGEGGIYSATKEFLEFLRAACDDAGALLVFDEVQCGLGRTGY 301

Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA 357
           LWAHE YG+FPDIMTLAKPLAGGLPIGA LVTE+VASAINYGDHGSTFAG  LVCNAA+ 
Sbjct: 302 LWAHEAYGVFPDIMTLAKPLAGGLPIGAILVTERVASAINYGDHGSTFAGGSLVCNAALT 361

Query: 358 VLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC 403
           V+ KI  P FLAS              KL  N HVK++RG+GLIIGIE DVSA+P+VDAC
Sbjct: 362 VVQKIGKPDFLASVSKKGLYFKEILKQKLGGNSHVKEIRGVGLIIGIELDVSASPLVDAC 421

Query: 404 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNSN 451
           R+SGLLVLTAGKGNVVRLVPPLII+E+EL  A +IL  TLPVL+ + +
Sbjct: 422 RNSGLLVLTAGKGNVVRLVPPLIITEEELGSAADILQNTLPVLNESDS 469

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465060|ref|XP_002268013.1| PREDICTED: acetylornithine aminotransferase, mitochondrial [Vitis vinifera] gi|296082676|emb|CBI21681.3| unnamed protein product [Vitis vinifera]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/456 (73%), Positives = 383/456 (83%), Gaps = 21/456 (4%)

Query: 17  LSQSGNLRRQIKFNGVKRRPMV-----AAASVNVEVNDAARGSAGGLG-RNNKEVMEAEK 70
           +SQ+  + R  K  G +    V      +A +NVEV      + G LG   +K+VME E 
Sbjct: 12  VSQANTVHRVFKLEGGRTLVQVNGQRAVSACLNVEVKAPKSANLGKLGFGESKDVMEMEG 71

Query: 71  KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
           +++VGTY R P+VL SGKGCKLYDAEGREYLD+SSGIAVN+LGHGD  W+KAV++QAN L
Sbjct: 72  RVIVGTYARTPIVLVSGKGCKLYDAEGREYLDMSSGIAVNSLGHGDPTWLKAVIEQANTL 131

Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
           THVSN+YYSIPQ+ELAKRLVACSF+DRVFFSN+GTEANEAAIKFARKFQRHS+PD+KEP 
Sbjct: 132 THVSNIYYSIPQVELAKRLVACSFSDRVFFSNSGTEANEAAIKFARKFQRHSHPDAKEPP 191

Query: 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250
           T+F++FTNSFHGRTMGALALTSKEHYRSPFEPVMPGV FVEYGNIEAT++LIQ GKTAAV
Sbjct: 192 TDFIAFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVTFVEYGNIEATKELIQKGKTAAV 251

Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
           FVEPIQGEGGIYSATKEFLQFLR ACDDAG LLVFDEVQCGLGRTG+LWAHE YG+FPDI
Sbjct: 252 FVEPIQGEGGIYSATKEFLQFLRSACDDAGVLLVFDEVQCGLGRTGHLWAHESYGVFPDI 311

Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
           MTLAKPLAGGLPIGA LVTE+VASAIN+GDHGSTFAGSPLVCNAA+AVL+KIS P+FLAS
Sbjct: 312 MTLAKPLAGGLPIGAVLVTERVASAINFGDHGSTFAGSPLVCNAALAVLEKISEPSFLAS 371

Query: 371 --------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKG 416
                         KL  NPHVK+VRG GLI+GIE DV A+P+V AC+++GLLVLT+GKG
Sbjct: 372 VAKKGQYLKQILTQKLGHNPHVKEVRGFGLIVGIELDVQASPLVVACQEAGLLVLTSGKG 431

Query: 417 NVVRLVPPLIISEQELDQAVEILCKTLPVLD-SNSN 451
           NVVRLVPPLII+E+EL+ A E+L  +LP LD SNS 
Sbjct: 432 NVVRLVPPLIITEEELELAAEVLSGSLPALDGSNSK 467

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486369|gb|ABK95025.1| unknown [Populus trichocarpa] gi|118487098|gb|ABK95379.1| unknown [Populus trichocarpa]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/461 (69%), Positives = 373/461 (80%), Gaps = 25/461 (5%)

Query: 4   AMSSTFQAPLQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNK 63
           ++     +P+ VP S + N RR             A  +++V   D+ +         ++
Sbjct: 3   SLQHFLNSPISVPFSPNLNHRRSFFLR--------ACLNLDVHAPDSVKPKTH---LKSR 51

Query: 64  EVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAV 123
           EVME E K+LVGTY R PVV++SGKGCKLYD EGREYLD +SGIAVNALGHGD DW+KAV
Sbjct: 52  EVMEMEGKVLVGTYARNPVVISSGKGCKLYDPEGREYLDCTSGIAVNALGHGDPDWVKAV 111

Query: 124 VDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSN 183
           V+QAN+LTHVSN++YS+PQ+ELA+RLVACSFADRVFF+N+GTEANEAAIKFARK+QR +N
Sbjct: 112 VEQANLLTHVSNVFYSVPQVELARRLVACSFADRVFFTNSGTEANEAAIKFARKYQRFTN 171

Query: 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243
           PD K+  TEF+SF+NSFHGRTMGALALTSKE YR PFEPVMPGVNF+EYG+++A  +LI+
Sbjct: 172 PDEKQQVTEFISFSNSFHGRTMGALALTSKEQYRFPFEPVMPGVNFLEYGDVQAATELIK 231

Query: 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303
            G+ AAVFVEPIQGEGGIYSATKEFLQ LR ACDDAG+LLVFDEVQCGLGRTGYLWAHE 
Sbjct: 232 SGRIAAVFVEPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGYLWAHEA 291

Query: 304 YGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS 363
           YG+ PDIMTLAKPLAGGLPIGAALV+EKVA+AI YGDHGSTFAG PLVCNAAIAVLDKIS
Sbjct: 292 YGVVPDIMTLAKPLAGGLPIGAALVSEKVAAAIKYGDHGSTFAGGPLVCNAAIAVLDKIS 351

Query: 364 NPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLL 409
            P FLAS              KL  N HV++VRGLGLIIGIE DVSA+P+VDACRDS LL
Sbjct: 352 KPGFLASVSEKGQYFKELLIHKLGGNSHVREVRGLGLIIGIELDVSASPLVDACRDSSLL 411

Query: 410 VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 450
           +LTAGKGNVVRLVPPLIISEQEL++A EI+ + LP LD  S
Sbjct: 412 ILTAGKGNVVRLVPPLIISEQELERAAEIILECLPALDKTS 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443065|ref|XP_002272158.1| PREDICTED: acetylornithine aminotransferase, mitochondrial [Vitis vinifera]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/461 (71%), Positives = 374/461 (81%), Gaps = 16/461 (3%)

Query: 7   STFQAPLQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRN--NKE 64
           ++ Q  L   L  + +LR              A A V V V     G +G +G    +KE
Sbjct: 2   ASIQFLLNNTLPSASDLRHSFSGLSGSSNGGRAIACVKVGVQAPGSGDSGKMGFRGASKE 61

Query: 65  VMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVV 124
           VMEAE +L+VGTY RAPVV++ G+GCKLYDAEGREYLD+++GIAVNALGHGD DW+KAVV
Sbjct: 62  VMEAEGRLMVGTYARAPVVISHGEGCKLYDAEGREYLDMTAGIAVNALGHGDPDWLKAVV 121

Query: 125 DQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNP 184
           +QAN LTHVSNM+YSIPQ+ELA+RLV+CSFADRVFFSN+GTEANEAAIKFARKFQR  +P
Sbjct: 122 EQANTLTHVSNMFYSIPQVELAERLVSCSFADRVFFSNSGTEANEAAIKFARKFQRFLHP 181

Query: 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP 244
           D K+ ATEF+SF+NSFHGRTMG+LALTSKE+YRSPFEPVMPGV F+EYGNI A R+LIQ 
Sbjct: 182 DQKQLATEFISFSNSFHGRTMGSLALTSKEYYRSPFEPVMPGVTFLEYGNIHAARELIQS 241

Query: 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY 304
           GK AAVFVEPIQGEGGIYSATKEFLQ LR ACDDAG+LLVFDEVQCGLGRTGYLWAHE Y
Sbjct: 242 GKIAAVFVEPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGYLWAHESY 301

Query: 305 GIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364
           GIFPDIMTLAKPLAGGLPIGA LVTE+VASAI YGDHGSTFAG PLVC AA+AVLDKIS 
Sbjct: 302 GIFPDIMTLAKPLAGGLPIGAVLVTERVASAIKYGDHGSTFAGGPLVCKAAVAVLDKISK 361

Query: 365 PAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLV 410
           P FL S              KL  NPHV++VRGLGLI+GIE DV A+P+VDACR+SGLL+
Sbjct: 362 PTFLDSVSKKGQYFKELLMQKLGGNPHVREVRGLGLIVGIELDVPASPLVDACRNSGLLI 421

Query: 411 LTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNSN 451
           LTAGKGNV+R+VPPLIISE+EL+ A EIL K LPVLD   +
Sbjct: 422 LTAGKGNVIRIVPPLIISEEELELAAEILLKCLPVLDKTKS 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140799|ref|XP_002323766.1| predicted protein [Populus trichocarpa] gi|222866768|gb|EEF03899.1| predicted protein [Populus trichocarpa]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/399 (77%), Positives = 350/399 (87%), Gaps = 15/399 (3%)

Query: 66  MEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD 125
           ME E K+LVGTY R PVV++SGKGCKLYD EGREYLD +SGIAVNALGHGD DW+KAVV+
Sbjct: 1   MEMEGKVLVGTYARNPVVISSGKGCKLYDPEGREYLDCTSGIAVNALGHGDPDWVKAVVE 60

Query: 126 QANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPD 185
           QAN+LTHVSN++YS+PQ+ELAKRLVACSFADRVFF+N+GTEANEAAIKFARK+QR +NP+
Sbjct: 61  QANLLTHVSNVFYSVPQVELAKRLVACSFADRVFFTNSGTEANEAAIKFARKYQRFTNPE 120

Query: 186 SKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245
            K+ ATEF+SF+NSFHGRTMGALALTSKE YR PFEPVMPGVNF+EYG+++A  +LI+ G
Sbjct: 121 -KQQATEFISFSNSFHGRTMGALALTSKEQYRFPFEPVMPGVNFLEYGDVQAATELIKSG 179

Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
           + AAVFVEPIQGEGGIYSATKEFLQ LR ACDDAG+LLVFDEVQCGLGRTGYLWAHE YG
Sbjct: 180 RIAAVFVEPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGYLWAHEAYG 239

Query: 306 IFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
           + PDIMTLAKPLAGGLPIGAALV+EKVA+AI YGDHGSTFAG PLVCNAAIAVLDKIS P
Sbjct: 240 VVPDIMTLAKPLAGGLPIGAALVSEKVAAAIKYGDHGSTFAGGPLVCNAAIAVLDKISKP 299

Query: 366 AFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVL 411
            FLAS              KL  N HV++VRGLGLIIGIE DVSA+P+VDACRDS LL+L
Sbjct: 300 GFLASVSEKGQYFKELLIHKLGGNSHVREVRGLGLIIGIELDVSASPLVDACRDSSLLIL 359

Query: 412 TAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 450
           TAGKGNVVRLVPPLIISEQEL++A EI+ + LP LD  S
Sbjct: 360 TAGKGNVVRLVPPLIISEQELERAAEIILECLPALDKTS 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083964|ref|XP_002307189.1| predicted protein [Populus trichocarpa] gi|222856638|gb|EEE94185.1| predicted protein [Populus trichocarpa]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/393 (78%), Positives = 344/393 (87%), Gaps = 14/393 (3%)

Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           +VGTY RAPVVL SGKGCKLYD EGREYLD++SGIAVNALGH D DW+KAV DQA+VLTH
Sbjct: 1   MVGTYGRAPVVLVSGKGCKLYDVEGREYLDMTSGIAVNALGHCDPDWVKAVADQAHVLTH 60

Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
           VSN+YYS+PQ+ELAKRLV CSFADRVFF+N+G EANEAAIKFARKFQRHSNPD K+PATE
Sbjct: 61  VSNVYYSVPQVELAKRLVDCSFADRVFFTNSGAEANEAAIKFARKFQRHSNPDVKDPATE 120

Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
           F+SFTNSFHGRTMGALALTSKE YR+PFEPVMPGV FVEYGNI+AT++LI+ GKTAAVFV
Sbjct: 121 FISFTNSFHGRTMGALALTSKEQYRTPFEPVMPGVTFVEYGNIKATQELIRRGKTAAVFV 180

Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
           EPIQGEGGIYSATK FL+FLR ACDDAGALLVFDEVQCGLGRTGYLWAHE YGIFPDIMT
Sbjct: 181 EPIQGEGGIYSATKAFLEFLRTACDDAGALLVFDEVQCGLGRTGYLWAHEAYGIFPDIMT 240

Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-- 370
           LAKPLAGGLPIGAALVTE+VAS+INYGDHGSTFAG  LVCNAA+ VL+KIS P FL+S  
Sbjct: 241 LAKPLAGGLPIGAALVTERVASSINYGDHGSTFAGGSLVCNAALTVLEKISKPEFLSSVS 300

Query: 371 ------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNV 418
                       KL RN HVK++RGLG IIGIE DV A+P+V ACR+SGLLVLTAGKGNV
Sbjct: 301 KKGLYLKEILQQKLGRNSHVKEIRGLGFIIGIELDVPASPLVSACRNSGLLVLTAGKGNV 360

Query: 419 VRLVPPLIISEQELDQAVEILCKTLPVLDSNSN 451
           VRLVPPL +++QEL  A +IL   + VLD N++
Sbjct: 361 VRLVPPLTVTKQELRLASDILQNAMSVLDENNS 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2811029|sp|O04866.1|ARGD_ALNGL RecName: Full=Acetylornithine aminotransferase, mitochondrial; Short=ACOAT; AltName: Full=Acetylornithine transaminase; Short=AOTA; Flags: Precursor gi|1944511|emb|CAA69936.1| acetylornithine aminotransferase [Alnus glutinosa]

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 310/429 (72%), Positives = 354/429 (82%), Gaps = 17/429 (3%)

Query: 35  RPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYD 94
           R +  +A  NVEV   +     G+   +KEVMEA  ++LVGTY R PVVL+ GKGCKLYD
Sbjct: 25  RHLQVSACANVEVQAPSSVKKQGV---SKEVMEAAGRVLVGTYARVPVVLSRGKGCKLYD 81

Query: 95  AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF 154
            EGREYLDLS+GIAVN LGH D+DW++AV +QA  LTHVSN++YSIPQ+ELAKRLVA SF
Sbjct: 82  PEGREYLDLSAGIAVNVLGHADSDWLRAVTEQAATLTHVSNVFYSIPQVELAKRLVASSF 141

Query: 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
           ADRVFFSN+GTEANEAAIKFARKFQR + PD K+PATEFVSF+NSFHGRTMG+LALTSKE
Sbjct: 142 ADRVFFSNSGTEANEAAIKFARKFQRFTRPDEKQPATEFVSFSNSFHGRTMGSLALTSKE 201

Query: 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274
           +YRSPFEPVMPGV F+EYGNIEA  +LIQ  K AAVFVEPIQGEGG+YSATKEFL  LR 
Sbjct: 202 NYRSPFEPVMPGVTFLEYGNIEAATQLIQRRKIAAVFVEPIQGEGGVYSATKEFLYALRK 261

Query: 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVAS 334
           ACDD+G LLVFDEVQCGLGRTGYLWAHE Y +FPDIMTLAKPLAGGLPIGA LVTE+VAS
Sbjct: 262 ACDDSGTLLVFDEVQCGLGRTGYLWAHEIYDVFPDIMTLAKPLAGGLPIGAVLVTERVAS 321

Query: 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKD 380
           AI YGDHG+TFAG PLVC AA+ VLDKI  P FLAS              KL  N HV++
Sbjct: 322 AITYGDHGTTFAGGPLVCKAALTVLDKILRPGFLASVSKKGHYFKEMLINKLGGNSHVRE 381

Query: 381 VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
           VRG+GLI+GIE DVSA+P+V+AC +SGLLVLTAGKGNVVR+VPPLII+EQEL++A EIL 
Sbjct: 382 VRGVGLIVGIELDVSASPLVNACLNSGLLVLTAGKGNVVRIVPPLIITEQELEKAAEILL 441

Query: 441 KTLPVLDSN 449
           + LP LD +
Sbjct: 442 QCLPALDRH 450

Source: Alnus glutinosa

Species: Alnus glutinosa

Genus: Alnus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536077|ref|XP_003536567.1| PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Glycine max]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 305/425 (71%), Positives = 356/425 (83%), Gaps = 14/425 (3%)

Query: 38  VAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEG 97
           V +A +NV+V+    G+     +  K+V+E E   LVGTY R PVVL  G+GCKLYD EG
Sbjct: 39  VVSACLNVDVDAPNTGNTTSEKKKTKDVIEMEGMYLVGTYARTPVVLERGEGCKLYDVEG 98

Query: 98  REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
            EYLDLS+GIAVNALGHGDADW+KAVV+QA  LTH SN++++IPQ+ELAKRLVA SFADR
Sbjct: 99  NEYLDLSAGIAVNALGHGDADWLKAVVEQAGTLTHTSNIFHTIPQVELAKRLVASSFADR 158

Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR 217
           VFF+N+GTEANEAAIKFARK+QRH+  + K PATEF++F+N FHGRT+GALALTSK  YR
Sbjct: 159 VFFANSGTEANEAAIKFARKYQRHTTSNGKVPATEFIAFSNCFHGRTLGALALTSKVQYR 218

Query: 218 SPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277
            PFEPVMPGV F+EYGN +A  +LI+ GK AAVFVEPIQGEGGIYSATKEFLQ LR+ACD
Sbjct: 219 MPFEPVMPGVTFLEYGNAQAAVELIKQGKIAAVFVEPIQGEGGIYSATKEFLQSLRNACD 278

Query: 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN 337
           + GALLVFDEVQCGLGR+G+LWAHE YG+FPD+MTLAKPLAGGLPIGA LVTE+VASAIN
Sbjct: 279 ETGALLVFDEVQCGLGRSGFLWAHEAYGVFPDMMTLAKPLAGGLPIGALLVTERVASAIN 338

Query: 338 YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG 383
           YGDHGSTFAGSPLVC+AA+AVLDKIS P FL+S              KL  N HVK++RG
Sbjct: 339 YGDHGSTFAGSPLVCSAALAVLDKISKPDFLSSVSKKGLYFKELLREKLGENRHVKEIRG 398

Query: 384 LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           +GLIIGI+ DV A+P+VDACR SGLLVLTAGKGNVVRLVPPLII+E+EL+QA  ILC+TL
Sbjct: 399 VGLIIGIDLDVPASPLVDACRSSGLLVLTAGKGNVVRLVPPLIITEKELEQAAGILCQTL 458

Query: 444 PVLDS 448
           PVLD+
Sbjct: 459 PVLDN 463

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520746|ref|XP_003529021.1| PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Glycine max]

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/470 (67%), Positives = 371/470 (78%), Gaps = 32/470 (6%)

Query: 7   STFQAPLQVPLSQSG-------NLRRQIKFNGVKRRPM-------VAAASVNVEVNDAAR 52
           S+F   L   +SQS        NL R+    G  R P+       V +A +NV+V+    
Sbjct: 2   SSFYMSLNPSISQSCYKPKQFFNLERESTLVG--RSPVIQIRCRRVVSACLNVDVDAPDS 59

Query: 53  GSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNAL 112
           G         K+V+E E K LVGTY R PVVL  G+GCKLYD EGREYLDLS+GIAVNAL
Sbjct: 60  GKTAL--EKTKDVIEMEGKFLVGTYARTPVVLERGEGCKLYDVEGREYLDLSAGIAVNAL 117

Query: 113 GHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAI 172
           GHGDADW+KAVV+QA  LTH SN++++IPQ+ELAKRLVA SFADRVFF+N+GTEANEAAI
Sbjct: 118 GHGDADWLKAVVEQAGTLTHTSNIFHTIPQVELAKRLVASSFADRVFFANSGTEANEAAI 177

Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232
           KFARK+QR +  D KEPATEF++F+N FHGRT+GALALTSK  YR+PFEPVMPGV F+EY
Sbjct: 178 KFARKYQRDTTTDGKEPATEFIAFSNCFHGRTLGALALTSKVQYRTPFEPVMPGVTFLEY 237

Query: 233 GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
           GN +A  +LI+ GK AAVFVEPIQGEGGIYSATKEFLQ L  ACD+AGALLVFDEVQCGL
Sbjct: 238 GNAQAAVELIKQGKIAAVFVEPIQGEGGIYSATKEFLQSLHSACDEAGALLVFDEVQCGL 297

Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352
           GR+G+LWAHE +G+FPD+MTLAKPLAGGLPIGA LVTE+VAS+INYGDHGSTFAG+PLVC
Sbjct: 298 GRSGFLWAHEAFGVFPDMMTLAKPLAGGLPIGAVLVTERVASSINYGDHGSTFAGNPLVC 357

Query: 353 NAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSATP 398
           +AA+AV DKIS P FL+S              KL  N HVK++RG+GLIIGI+ DV A+P
Sbjct: 358 SAALAVFDKISKPDFLSSVSKKGLYFKELLKQKLGGNQHVKEIRGVGLIIGIDLDVPASP 417

Query: 399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448
            VDACR+SGLLVLTAGKGNVVRLVPPLII+E+EL+ A +ILCKTLPVLD+
Sbjct: 418 FVDACRNSGLLVLTAGKGNVVRLVPPLIITEKELELAADILCKTLPVLDN 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072680|gb|ACJ84700.1| unknown [Medicago truncatula]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 296/405 (73%), Positives = 345/405 (85%), Gaps = 14/405 (3%)

Query: 60  RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +  KEV++ E K +VGTY RAP+VL  GKGC++YD +G EYLD S GIAVNALGHGD DW
Sbjct: 66  KKTKEVIDEEAKYIVGTYARAPIVLEKGKGCEVYDVQGNEYLDCSGGIAVNALGHGDDDW 125

Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
           +KAVVDQA +LTHVSN+Y+S+PQ+ELAKRLVA SFA+RVFF+N+GTEANEAAIKF+RK+Q
Sbjct: 126 LKAVVDQAGLLTHVSNIYHSLPQVELAKRLVASSFANRVFFANSGTEANEAAIKFSRKYQ 185

Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
           +H+  D K PATEF++F+N FHGRT+GALALTSK  YR+PFEPVMPGV FVEYGN  A  
Sbjct: 186 KHTCTDGKVPATEFLAFSNCFHGRTLGALALTSKVQYRTPFEPVMPGVTFVEYGNAPAAV 245

Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
           +LIQ GK AAVFVEPIQGEGGIYSATKEFLQ LR+ACD+ GAL VFDEVQCGLGR+G+LW
Sbjct: 246 ELIQQGKIAAVFVEPIQGEGGIYSATKEFLQSLRNACDETGALPVFDEVQCGLGRSGFLW 305

Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
           AHE +G+FPDIMTLAKPLAGGLPIGA LVTEKVASAINYGDHGSTFAG PL+CNAA+AVL
Sbjct: 306 AHEAFGVFPDIMTLAKPLAGGLPIGAVLVTEKVASAINYGDHGSTFAGGPLICNAALAVL 365

Query: 360 DKISNPAFLA--------------SKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRD 405
           +KIS P FL+               KL  N HVK++RG+GLIIGI+ DVSATP+VDACRD
Sbjct: 366 NKISKPTFLSDVSKKGLCFKELLKQKLGGNRHVKEIRGVGLIIGIDLDVSATPLVDACRD 425

Query: 406 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 450
           SGLLVLTAGKGNVVRLVPPLII+EQE++ A +IL +TL VLD+N+
Sbjct: 426 SGLLVLTAGKGNVVRLVPPLIITEQEIEHAADILSQTLHVLDANN 470

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
TAIR|locus:2198948	457	WIN1 "AT1G80600" [Arabidopsis	0.975	0.962	0.667	4.3e-157
UNIPROTKB|Q3A9W3	398	argD "Acetylornithine aminotra	0.818	0.927	0.476	3.3e-86
TIGR_CMR|CHY_2262	398	CHY_2262 "acetylornithine amin	0.818	0.927	0.476	3.3e-86
CGD|CAL0001267	455	ARG8 [Candida albicans (taxid:	0.758	0.751	0.423	3.5e-84
ASPGD|ASPL0000052571	476	AN1150 [Emericella nidulans (t	0.718	0.680	0.451	4e-83
DICTYBASE|DDB_G0269526	453	argD "acetylornithine transami	0.709	0.706	0.481	1.6e-79
TIGR_CMR|GSU_0151	399	GSU_0151 "acetylornithine amin	0.829	0.937	0.431	1e-77
TIGR_CMR|SPO_0962	391	SPO_0962 "acetylornithine amin	0.782	0.902	0.448	1.9e-76
TIGR_CMR|DET_1258	398	DET_1258 "acetylornithine amin	0.820	0.929	0.436	5e-76
UNIPROTKB|P77581	406	astC [Escherichia coli K-12 (t	0.694	0.770	0.432	5.9e-74

TAIR|locus:2198948 WIN1 "AT1G80600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1531 (544.0 bits), Expect = 4.3e-157, P = 4.3e-157
 Identities = 307/460 (66%), Positives = 368/460 (80%)

Query:     5 MSSTFQAPL-QVPLSQSGNLRRQIKFNGVKRRPMVAA--ASVNVEVNDAARGSAGGLGRN 61
             M+S  Q  L + P S+ G LRR+++   ++ R       ASV     D A      +   
Sbjct:     1 MASLSQITLPRAPSSEIGLLRRRLERPIIRTRIGFNGRIASVLTNAGDQAVSVKASV--- 57

Query:    62 NKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIK 121
             +++V+E E K++VGTY RAPVVL+SGKGCKL+D EG+EYLD +SGIAVNALGHGD DW++
Sbjct:    58 SQKVIEEEAKVIVGTYARAPVVLSSGKGCKLFDPEGKEYLDCASGIAVNALGHGDPDWLR 117

Query:   122 AVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRH 181
             AV +QA VL HVSN+YY+IPQIELAKRLVA SFADRVFF N+GTEANEAAIKF+RKFQR 
Sbjct:   118 AVTEQAGVLAHVSNVYYTIPQIELAKRLVASSFADRVFFCNSGTEANEAAIKFSRKFQRF 177

Query:   182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKL 241
             ++P+ KE AT F++FTNSFHGRT+GALALTSKE YR+PFEP+MPGV F+EYGNI+A   L
Sbjct:   178 THPEDKEVATGFIAFTNSFHGRTLGALALTSKEQYRTPFEPIMPGVTFLEYGNIQAATDL 237

Query:   242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301
             I+ GK AAVFVEPIQGEGGIYSATKEFLQ LR ACD AG+LLVFDEVQCGLGRTG +WA+
Sbjct:   238 IRSGKIAAVFVEPIQGEGGIYSATKEFLQSLRSACDAAGSLLVFDEVQCGLGRTGLMWAY 297

Query:   302 EHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
             E +G+ PDIMT+AKPLAGGLPIGA LVTEKVA  INYGDHGSTFAGSPLVC+AAIAV+DK
Sbjct:   298 EAFGVTPDIMTVAKPLAGGLPIGAVLVTEKVAETINYGDHGSTFAGSPLVCSAAIAVMDK 357

Query:   362 ISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSG 407
             +S P+FL+S              KL  N HVK+VRG GLIIG+E DV A+ +VDACRDSG
Sbjct:   358 VSKPSFLSSVSNKGRYFRDLLVKKLGGNSHVKEVRGEGLIIGVELDVPASSLVDACRDSG 417

Query:   408 LLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447
             LL+LTAGKGNVVR+VPPL+ISE+E+++AVEI+ + L  LD
Sbjct:   418 LLILTAGKGNVVRIVPPLVISEEEIERAVEIMSQNLTALD 457

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=IGI;ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0044419 "interspecies interaction between organisms" evidence=IPI

GO:0005507 "copper ion binding" evidence=IDA

GO:0048481 "ovule development" evidence=RCA

GO:0006526 "arginine biosynthetic process" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

UNIPROTKB|Q3A9W3 argD "Acetylornithine aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 184/386 (47%), Positives = 247/386 (63%)

Query:    63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
             KE++E E K L+ TY R PV L SGKG  +YD  G +YLDL +GIAVN LG+       A
Sbjct:     4 KELIEKESKYLMQTYRRKPVYLVSGKGSYVYDDAGNKYLDLVAGIAVNTLGYAHPKLTAA 63

Query:   123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
             V      L H SN++Y+ PQ+ELA++LV  S  DRVFF+N+G EA E AIK ARK+    
Sbjct:    64 VETAVKTLHHTSNLFYTRPQVELAQKLVENSPFDRVFFANSGAEAVEGAIKLARKYWWQK 123

Query:   183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
                  E   E +S  NSFHGRTMGAL+ T +E Y+ PF P++PG  +V Y ++ A  K +
Sbjct:   124 G----EEKYEIISAVNSFHGRTMGALSATGQEKYQKPFRPLVPGFVYVPYNDLNALEKAL 179

Query:   243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
                KTAAV +EP+QGE G+  A   +LQ + + C +   LL+FDEVQ G+GRTG L+A E
Sbjct:   180 T-SKTAAVILEPVQGESGVNPADPAYLQKVAELCREKNILLIFDEVQTGVGRTGKLFAFE 238

Query:   303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362
             H+G+ PDI+TLAK LAGG+PIGA L  E+VA A   GDH STF G+PL C AA+AVL+++
Sbjct:   239 HFGVVPDIITLAKGLAGGVPIGAVLAKEEVAKAFEPGDHASTFGGNPLACTAALAVLEEV 298

Query:   363 SNPAFLA----------SKLARNPHVKDVRGLGLIIGIEFDV-SATPVVDACRDSGLLVL 411
               P FL           + LA  P +K+VRG GL++GIE +   A  V +     G+L+ 
Sbjct:   299 LAPGFLEEVLDKGKLFYTLLADAPGIKEVRGYGLMLGIELNFPGAGRVSEILLAKGVLIN 358

Query:   412 TAGKGNVVRLVPPLIISEQELDQAVE 437
               G+  ++R+VPPLII+ +E+ +A E
Sbjct:   359 NVGEW-ILRIVPPLIITREEIREASE 383

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=ISS

GO:0006526 "arginine biosynthetic process" evidence=ISS

TIGR_CMR|CHY_2262 CHY_2262 "acetylornithine aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 184/386 (47%), Positives = 247/386 (63%)

Query:    63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
             KE++E E K L+ TY R PV L SGKG  +YD  G +YLDL +GIAVN LG+       A
Sbjct:     4 KELIEKESKYLMQTYRRKPVYLVSGKGSYVYDDAGNKYLDLVAGIAVNTLGYAHPKLTAA 63

Query:   123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
             V      L H SN++Y+ PQ+ELA++LV  S  DRVFF+N+G EA E AIK ARK+    
Sbjct:    64 VETAVKTLHHTSNLFYTRPQVELAQKLVENSPFDRVFFANSGAEAVEGAIKLARKYWWQK 123

Query:   183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
                  E   E +S  NSFHGRTMGAL+ T +E Y+ PF P++PG  +V Y ++ A  K +
Sbjct:   124 G----EEKYEIISAVNSFHGRTMGALSATGQEKYQKPFRPLVPGFVYVPYNDLNALEKAL 179

Query:   243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
                KTAAV +EP+QGE G+  A   +LQ + + C +   LL+FDEVQ G+GRTG L+A E
Sbjct:   180 T-SKTAAVILEPVQGESGVNPADPAYLQKVAELCREKNILLIFDEVQTGVGRTGKLFAFE 238

Query:   303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362
             H+G+ PDI+TLAK LAGG+PIGA L  E+VA A   GDH STF G+PL C AA+AVL+++
Sbjct:   239 HFGVVPDIITLAKGLAGGVPIGAVLAKEEVAKAFEPGDHASTFGGNPLACTAALAVLEEV 298

Query:   363 SNPAFLA----------SKLARNPHVKDVRGLGLIIGIEFDV-SATPVVDACRDSGLLVL 411
               P FL           + LA  P +K+VRG GL++GIE +   A  V +     G+L+ 
Sbjct:   299 LAPGFLEEVLDKGKLFYTLLADAPGIKEVRGYGLMLGIELNFPGAGRVSEILLAKGVLIN 358

Query:   412 TAGKGNVVRLVPPLIISEQELDQAVE 437
               G+  ++R+VPPLII+ +E+ +A E
Sbjct:   359 NVGEW-ILRIVPPLIITREEIREASE 383

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=ISS

GO:0006526 "arginine biosynthetic process" evidence=ISS

CGD|CAL0001267 ARG8 [Candida albicans (taxid:5476)]

 Score = 723 (259.6 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
 Identities = 153/361 (42%), Positives = 213/361 (59%)

Query:    17 LSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGT 76
             L  S  +++   FN      +      +  V DA   S  G     K +    K   V T
Sbjct:    10 LKTSTTIKKSFSFN-TATLSLPTYKKYSTSVPDANDESHTG-----KFINSISKPYSVTT 63

Query:    77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
             Y R  +VL  GKG  +YD E R+Y+D +SGIAV  LGH      + + DQ+  L H SN+
Sbjct:    64 YARPNLVLTHGKGSYIYDLEDRKYIDFTSGIAVTCLGHSYEPITQLIKDQSEKLIHCSNL 123

Query:   137 YYSIPQIELAKRLVACS--F-----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
             YY++P  EL+ +L+  +  F     A RVF  N+GTEANEAA+KFARK+ +  NP+  E 
Sbjct:   124 YYNLPAGELSNKLIVKTKEFDGMKDASRVFLCNSGTEANEAALKFARKYGKSINPEKYE- 182

Query:   190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249
                F++F NSFHGR+MGAL++T    Y+ PF P++PGV   +  +IE+ +++I   KT A
Sbjct:   183 ---FITFENSFHGRSMGALSVTPNPKYQEPFSPLIPGVKIAKPNDIESVKQVINKDKTCA 239

Query:   250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG--IF 307
             V +EP+QGEGG+    + FL  LR  CD+   LL++DE+QCGLGRTG LWAH        
Sbjct:   240 VIIEPLQGEGGVNIIDESFLIELRKLCDENNVLLIYDEIQCGLGRTGKLWAHSWLSPEAH 299

Query:   308 PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367
             PDI+T+AK L  G PIGA ++TEKV  ++N GDHG+T+ G+PL       ++D I +  F
Sbjct:   300 PDIVTIAKALGNGFPIGATMITEKVEKSLNVGDHGTTYGGNPLASTVGSYIVDHIGDKEF 359

Query:   368 L 368
             L
Sbjct:   360 L 360

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=IEA

ASPGD|ASPL0000052571 AN1150 [Emericella nidulans (taxid:162425)]

 Score = 715 (256.8 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
 Identities = 155/343 (45%), Positives = 206/343 (60%)

Query:    39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGR 98
             A A V+  V  A      G    +   +      LV TY R   ++  G+GC L+D E R
Sbjct:    36 AQAGVSNNVKGAVVTPDPGADSVSAAFVNERAPYLVPTYVRPAPIMVKGQGCYLWDMENR 95

Query:    99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLV-------A 151
              YLDL++GIAVN+LGH D +  K + +QA  L H SN+Y++     L+K L+       A
Sbjct:    96 RYLDLTAGIAVNSLGHCDPEISKIIAEQAETLLHASNLYHNAWVGALSKDLIILTRESGA 155

Query:   152 CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211
                A +VF +N+GTEANEAAIKFARK  R  +P   +   E VSF NSFHGRTMGAL+ T
Sbjct:   156 MRDAAQVFIANSGTEANEAAIKFARKTGRARDPSGAKH--EIVSFHNSFHGRTMGALSAT 213

Query:   212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF 271
                 Y++PF P++PG  + +Y ++   + L+   KT  V VEPIQGEGG+  AT EFL  
Sbjct:   214 PNPKYQTPFSPMLPGFKYGKYNDVAQLKDLVTE-KTCGVIVEPIQGEGGVNVATPEFLSA 272

Query:   272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP--------DIMTLAKPLAGGLPI 323
             LR  CDD GA+L+FDE+QCGL RTG  WAH H  + P        DI+T AK L  G+PI
Sbjct:   273 LRKRCDDVGAVLIFDEIQCGLSRTGSFWAHAHPSLVPSSGEAAHPDILTTAKALGNGIPI 332

Query:   324 GAALVTEK-VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
             GA +V+ K VA  I  GDHG+TF G+PL C  A  ++ ++++P
Sbjct:   333 GATIVSGKTVADNIKAGDHGTTFGGNPLACRVAHHIIHRLASP 375

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=IEA;RCA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=RCA

GO:0006525 "arginine metabolic process" evidence=RCA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

DICTYBASE|DDB_G0269526 argD "acetylornithine transaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 160/332 (48%), Positives = 221/332 (66%)

Query:    58 LGRNNKE----VMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNAL 112
             L R+NK+     ++    +++ TY R + +V   GK   LYD +G +YLD  +GIAVNAL
Sbjct:    39 LDRDNKDGTSDYIKLHDNVIMNTYGRVSDIVFTHGKDSWLYDMKGDKYLDFGAGIAVNAL 98

Query:   113 GHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAA 171
             GH +  W + V +Q+  LTH+SN+YY+ P IELA+ ++A +   D+VFF+N+GTEANEAA
Sbjct:    99 GHSNDGWSEVVANQSKKLTHLSNLYYNQPAIELAQSMIASTPIFDKVFFANSGTEANEAA 158

Query:   172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231
             +KFA+K         K    E ++F++ F GR+MG+L+ T K  YR  + P++PGV+F E
Sbjct:   159 LKFAKKIGIAKGGVDKH---EIIAFSHGFSGRSMGSLSCTHKSKYREIYGPLVPGVHFAE 215

Query:   232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
             Y +IE+ +KL+   KT AV +EP+QGEGG+ +AT EF+Q L   C +   LL+ DEVQCG
Sbjct:   216 YNDIESVKKLMSKSKTCAVIIEPVQGEGGLEAATVEFMQQLYKLCKENDCLLIVDEVQCG 275

Query:   292 LGRTGYLWAHEHYGIF---PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGS 348
             +GRTG LWAH  +      PDIMTLAKPLAGGLPIGA LV++KVAS I  GDHG+TF G 
Sbjct:   276 IGRTGQLWAHTRFDTEKCKPDIMTLAKPLAGGLPIGAVLVSDKVASEIKPGDHGTTFGGG 335

Query:   349 PLVCNAAIAVLDKISNPAFLASKLARNPHVKD 380
             PLVC     V ++IS P+FL     +  ++ D
Sbjct:   336 PLVCEVGKYVFERISQPSFLKEVQEKGKYLTD 367

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0006525 "arginine metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006592 "ornithine biosynthetic process" evidence=ISS

GO:0006526 "arginine biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|GSU_0151 GSU_0151 "acetylornithine aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 170/394 (43%), Positives = 249/394 (63%)

Query:    61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
             N  + +    K ++ TY R P+V   G+GC+++DA+G+EYLD  +G+AVN LGH     +
Sbjct:     2 NTTQWIAKADKYIMKTYGRYPLVPVRGEGCRVWDADGKEYLDFLAGVAVNNLGHCHPKVV 61

Query:   121 KAVVDQANVLTHVSNMYYSIP-QIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
             +A+  QA  + H SN YY IP QIELA+ L A SFAD+VFF N+G EANEAAIK ARK  
Sbjct:    62 EALRTQAAEIIHCSN-YYHIPNQIELAELLCAHSFADKVFFCNSGAEANEAAIKLARKHA 120

Query:   180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
             R    D++      ++   SFHGRTM  ++ T +E  +  F+P++ G  +V + +  A  
Sbjct:   121 REKTGDAERYG--IITALASFHGRTMATISATGQEKVQKFFDPLLHGFTYVPFDDAAALE 178

Query:   240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
               + P  T AV +EPIQGEGG+   + ++ + +R+ CD  G LL+FDEVQ G+GRTG L+
Sbjct:   179 AAVTP-TTCAVMLEPIQGEGGVVVPSADYFRKVREICDRHGLLLIFDEVQVGIGRTGKLF 237

Query:   300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA-- 357
             AHEH+ + PDIMTLAK LAGG PIGA L  +++A++ + G HGSTF G+PLV  A +A  
Sbjct:   238 AHEHFDVTPDIMTLAKALAGGAPIGAMLARDEIAASFSPGTHGSTFGGNPLVTAAGLAAV 297

Query:   358 --VLDK-ISNPA-----FLASKLARNPH----VKDVRGLGLIIGIEFDVSATPVVDACRD 405
               VL++ + N A     +L  +L R       + DVRG+GL++G+E  V A  +V    +
Sbjct:   298 RAVLEEGLLNRAEEMGEYLVGELERLKGKYDIITDVRGIGLMVGMELSVPAGDIVLKGLE 357

Query:   406 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
              G+L L   +  V+R VPPL++++QE++  + +L
Sbjct:   358 RGVL-LNVAQDRVLRFVPPLVVTKQEVNDMIAVL 390

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=ISS

GO:0006526 "arginine biosynthetic process" evidence=ISS

TIGR_CMR|SPO_0962 SPO_0962 "acetylornithine aminotransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 169/377 (44%), Positives = 235/377 (62%)

Query:    76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN 135
             TY RAP+    G+G  L +A+GR +LDL +GIAVNALGH     +KA+ DQA  L HVSN
Sbjct:     8 TYTRAPLHFVKGEGAWLTEADGRRFLDLGAGIAVNALGHAHPALVKALTDQAQNLWHVSN 67

Query:   136 MYYSIPQIE-LAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-TEF 193
             +Y+ IPQ + LA +LV  +FAD VFF+N+GTEA E A+K ARK+      D  +P   E 
Sbjct:    68 LYH-IPQQQALADKLVEHTFADTVFFTNSGTEACELAVKMARKYFY----DKGQPERVEI 122

Query:   194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253
             ++F  SFHGR+   +A    E     F P++PG   + +G+++     I   KTAA+ +E
Sbjct:   123 ITFDGSFHGRSSAGIAAAGSEKMVKGFGPLLPGFVHLTFGDLDGVTNAITD-KTAAILIE 181

Query:   254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313
             P+QGEGGI       L+ LR  CDD G LL+ DEVQCG+GRTG L+AHE  GI PDIM +
Sbjct:   182 PVQGEGGIRPVPDADLKALRQICDDHGLLLILDEVQCGVGRTGRLFAHEWAGITPDIMMV 241

Query:   314 AKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASK-- 371
             AK + GG P+GA L TE+ AS +  G HGST+ G+PL C    AV+D +++P FLA    
Sbjct:   242 AKGIGGGFPLGAVLATEEAASGMTVGTHGSTYGGNPLGCAVGCAVMDHVADPDFLAEVNR 301

Query:   372 ------------LARNPHV-KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNV 418
                         +A +P+V ++VRG GL++G++   S   VV A  D+ L++      NV
Sbjct:   302 KAALLRQRLEGLIATHPNVFEEVRGSGLMLGLKCKASNLDVVKAGFDN-LVITVPAADNV 360

Query:   419 VRLVPPLIISEQELDQA 435
             VRL+PPL ++E+++ +A
Sbjct:   361 VRLLPPLTLTEEDIAEA 377

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=ISS

GO:0006526 "arginine biosynthetic process" evidence=ISS

TIGR_CMR|DET_1258 DET_1258 "acetylornithine aminotransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 171/392 (43%), Positives = 243/392 (61%)

Query:    67 EAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQ 126
             E E K  + T+ RAP+ +  G+G K++D +G+EYLD  +G AVN+LGH     +KAV +Q
Sbjct:     6 ELEHKYYMQTFYRAPITIVKGQGAKVWDDKGKEYLDFVAGWAVNSLGHCHPAVVKAVSEQ 65

Query:   127 ANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDS 186
             A  L   SN +Y+IPQ++LAK LV  S  DR+FF N+GTEA E A+K AR++ +      
Sbjct:    66 AGTLIQTSNNFYTIPQLKLAKLLVDNSVLDRIFFCNSGTEATEGAVKLARRYGKLK---- 121

Query:   187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246
              + A E ++ T SFHGRT+  ++ + +  Y+ P+ P+  G   VEY N +A +  I   K
Sbjct:   122 LKGAYEVITATGSFHGRTLAMVSASGQSKYQEPYTPLPTGFINVEYNNPQAIKTAITD-K 180

Query:   247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI 306
             T AV +EPIQGE G+    K +L+ +R  CD+AG LL+ DE+Q G+GRTG L+A+EH GI
Sbjct:   181 TCAVMLEPIQGESGVNVPDKGYLKAVRQICDEAGILLILDEIQTGIGRTGKLFAYEHSGI 240

Query:   307 FPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA----VLDK- 361
              PDI+TLAK LAGG+PIGA +  E  AS    G+HGSTF G+PL C A  A    +LD  
Sbjct:   241 EPDIITLAKGLAGGIPIGAFMAKES-ASVFAKGEHGSTFGGNPLACAAGYAAMKFILDNH 299

Query:   362 IS-NPAFLASKLARN------PH--VKDVRGLGLIIGIEFDVS-ATPVVDACRDSGLLVL 411
             IS N   + S LA         H  ++  RG GL++ ++F  + A  +V++C + GLL L
Sbjct:   300 ISENAGSMGSYLAEGLEKLKIKHSLIQGCRGCGLLMALDFKTNIAKEIVESCLEEGLL-L 358

Query:   412 TAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
              A K N +R +PPL I++ ++D A+  L   L
Sbjct:   359 NAVKPNALRFMPPLNITQADIDAAIAKLDSVL 390

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=ISS

GO:0006526 "arginine biosynthetic process" evidence=ISS

UNIPROTKB|P77581 astC [Escherichia coli K-12 (taxid:83333)]

 Score = 667 (239.9 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
 Identities = 143/331 (43%), Positives = 198/331 (59%)

Query:    73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
             ++  Y  AP +   G+G +L+D +G+EY+D + GIAVNALGH   +  +A+ +QA+   H
Sbjct:    14 MIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWH 73

Query:   133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
               N Y + P + LAK+L+  +FADRVFF N+G EANEAA+K ARKF  H    S +    
Sbjct:    74 TGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFA-HDRYGSHKSG-- 130

Query:   193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
              V+F N+FHGRT+  ++   +  Y   F P+   +    Y +I +   LI    T AV V
Sbjct:   131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDS-TCAVIV 189

Query:   253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
             EPIQGEGG+  A+  FLQ LR+ C+   ALL+FDEVQ G+GRTG L+A+ HYG+ PD++T
Sbjct:   190 EPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLT 249

Query:   313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKL 372
              AK L GG P+GA L TE+ A  +  G HG+T+ G+PL    A  VL+ I+ P  L    
Sbjct:   250 TAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVK 309

Query:   373 ARNP----------H----VKDVRGLGLIIG 389
              R+           H      +VRGLGL+IG
Sbjct:   310 QRHDWFVERLNTINHRYGLFSEVRGLGLLIG 340

GO:0043825 "succinylornithine transaminase activity" evidence=IEA;IDA

GO:0006593 "ornithine catabolic process" evidence=IEA;IMP

GO:0006527 "arginine catabolic process" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019545 "arginine catabolic process to succinate" evidence=IEA;IMP

GO:0003992 "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" evidence=NR

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9PIR7	ARGD_CAMJE	2, ., 6, ., 1, ., 1, 1	0.4005	0.8181	0.9389	yes	no
B7LQ44	ASTC_ESCF3	2, ., 6, ., 1, ., 8, 1	0.4155	0.8026	0.8916	yes	no
B7MVM7	ASTC_ECO81	2, ., 6, ., 1, ., 8, 1	0.4233	0.8026	0.8916	yes	no
Q97GH9	ARGD_CLOAB	2, ., 6, ., 1, ., 1, 1	0.4493	0.8093	0.9431	yes	no
Q75AW1	ARGD_ASHGO	2, ., 6, ., 1, ., 1, 1	0.3954	0.8093	0.8628	yes	no
Q1C8B1	ASTC_YERPA	2, ., 6, ., 1, ., 8, 1	0.4153	0.8137	0.8864	yes	no
B7NT29	ASTC_ECO7I	2, ., 6, ., 1, ., 8, 1	0.4129	0.8026	0.8916	yes	no
Q58131	ARGD_METJA	2, ., 6, ., 1, ., 1, 1	0.4587	0.8181	0.9271	yes	no
Q6C846	ARGD_YARLI	2, ., 6, ., 1, ., 1, 1	0.4334	0.8314	0.9124	yes	no
Q59282	ARGD_CORGL	2, ., 6, ., 1, ., 1, 1	0.42	0.8093	0.9335	yes	no
Q1RB45	ASTC_ECOUT	2, ., 6, ., 1, ., 8, 1	0.4233	0.8026	0.8916	yes	no
Q9M8M7	ARGD_ARATH	2, ., 6, ., 1, ., 1, 1	0.6609	0.9623	0.9496	yes	no
Q55DT8	ARGD_DICDI	2, ., 6, ., 1, ., 1, 1	0.4412	0.8603	0.8565	yes	no
Q66B21	ASTC_YERPS	2, ., 6, ., 1, ., 8, 1	0.4179	0.8137	0.8864	yes	no
A1ABS9	ASTC_ECOK1	2, ., 6, ., 1, ., 8, 1	0.4233	0.8026	0.8916	yes	no
O30156	ARGD_ARCFU	2, ., 6, ., 1, ., 1, 1	0.4464	0.8004	0.9626	yes	no
A9QZ63	ASTC_YERPG	2, ., 6, ., 1, ., 8, 1	0.4153	0.8137	0.8864	yes	no
Q7VMS5	ARGD_HAEDU	2, ., 6, ., 1, ., 1, 1	0.4075	0.8359	0.9592	yes	no
B7USC9	ASTC_ECO27	2, ., 6, ., 1, ., 8, 1	0.4233	0.8026	0.8916	yes	no
Q8PX16	ARGD_METMA	2, ., 6, ., 1, ., 1, 1	0.4125	0.8248	0.9417	yes	no
P54752	ARGD_NOSS1	2, ., 6, ., 1, ., 1, 1	0.4177	0.8115	0.8571	yes	no
B2U3D0	ASTC_SHIB3	2, ., 6, ., 1, ., 8, 1	0.4103	0.8026	0.8916	yes	no
Q9X2A5	ARGD_THEMA	2, ., 6, ., 1, ., 1, 1	0.4651	0.8070	0.9454	yes	no
O74548	ARGD_SCHPO	2, ., 6, ., 1, ., 1, 1	0.3887	0.8292	0.8480	yes	no
Q3Z295	ASTC_SHISS	2, ., 6, ., 1, ., 8, 1	0.4155	0.8026	0.8916	yes	no
B1LDY3	ASTC_ECOSM	2, ., 6, ., 1, ., 8, 1	0.4233	0.8026	0.8916	yes	no
Q0TH82	ASTC_ECOL5	2, ., 6, ., 1, ., 8, 1	0.4233	0.8026	0.8916	yes	no
B7L6M2	ASTC_ECO55	2, ., 6, ., 1, ., 8, 1	0.4129	0.8026	0.8916	yes	no
Q89VE9	ARGD1_BRAJA	2, ., 6, ., 1, ., 1, 1	0.4390	0.8292	0.9234	yes	no
A7FIL6	ASTC_YERP3	2, ., 6, ., 1, ., 8, 1	0.4153	0.8137	0.8864	yes	no
B7N584	ASTC_ECOLU	2, ., 6, ., 1, ., 8, 1	0.4155	0.8026	0.8916	yes	no
B7MAV9	ASTC_ECO45	2, ., 6, ., 1, ., 8, 1	0.4233	0.8026	0.8916	yes	no
Q321P0	ASTC_SHIBS	2, ., 6, ., 1, ., 8, 1	0.4103	0.8026	0.8916	yes	no
Q8R7C1	ARGD_THETN	2, ., 6, ., 1, ., 1, 1	0.4333	0.8181	0.9389	yes	no
Q6BUP9	ARGD_DEBHA	2, ., 6, ., 1, ., 1, 1	0.3854	0.9223	0.8927	yes	no
O27392	ARGD_METTH	2, ., 6, ., 1, ., 1, 1	0.4314	0.8137	0.9410	yes	no
B5YQ35	ASTC_ECO5E	2, ., 6, ., 1, ., 8, 1	0.4129	0.8026	0.8916	yes	no
Q8FGZ9	ASTC_ECOL6	2, ., 6, ., 1, ., 8, 1	0.4233	0.8026	0.8916	yes	no
P59316	ARGD_CHLTE	2, ., 6, ., 1, ., 1, 1	0.3943	0.8181	0.9225	yes	no
P59319	ARGD_PSEPK	2, ., 6, ., 1, ., 1, 1	0.4010	0.8226	0.9137	yes	no
Q8D0D7	ASTC_YERPE	2, ., 6, ., 1, ., 8, 1	0.4153	0.8137	0.8864	yes	no
O04866	ARGD_ALNGL	2, ., 6, ., 1, ., 1, 1	0.7226	0.9135	0.9135	N/A	no
Q9AAL3	ARGD1_CAUCR	2, ., 6, ., 1, ., 8, 1	0.4453	0.8070	0.9285	yes	no
Q8TUZ5	ARGD_METKA	2, ., 6, ., 1, ., 1, 1	0.4432	0.8026	0.9305	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.976
4th Layer	2.6.1.11	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	451
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	0.0
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	0.0
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	0.0
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	1e-165
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	1e-161
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	1e-149
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	1e-143
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	1e-128
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	1e-128
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	1e-126
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	1e-122
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	1e-121
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	1e-120
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	1e-115
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	1e-113
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	1e-111
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	1e-106
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	1e-104
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	3e-97
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	4e-95
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	1e-92
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	2e-92
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	8e-87
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	2e-85
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	2e-80
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	6e-76
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	1e-75
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	8e-75
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	1e-74
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	3e-74
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	5e-74
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	6e-73
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	3e-72
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	3e-72
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	2e-71
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	2e-71
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	2e-69
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	2e-68
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	1e-66
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	2e-66
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	1e-65
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	6e-65
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	8e-65
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	6e-64
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	6e-61
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	1e-59
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	5e-59
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	9e-59
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	5e-58
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	9e-58
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	1e-56
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	6e-56
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	5e-54
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	3e-53
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	2e-50
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	5e-50
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	5e-48
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	6e-48
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	3e-46
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	6e-46
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	1e-44
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	6e-44
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	1e-43
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	1e-43
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	1e-43
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	2e-42
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	4e-40
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	6e-40
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	1e-39
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	3e-39
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	1e-38
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	5e-38
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	2e-35
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	2e-33
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	2e-29
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	4e-29
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	6e-27
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	5e-21
PRK07046	453	PRK07046, PRK07046, aminotransferase; Validated	7e-16
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	3e-13
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-11
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	3e-08
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	7e-04

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score =  728 bits (1881), Expect = 0.0
 Identities = 294/382 (76%), Positives = 325/382 (85%), Gaps = 18/382 (4%)

Query: 84  LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQI 143
             SGKGCKLYD EG+EYLD+++GIAVNALGHGD DW+KAV +QA  L HVSN+Y++IPQ+
Sbjct: 1   FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQV 60

Query: 144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP----ATEFVSFTNS 199
           ELAKRLVA SFADRVFF N+GTEANEAAIKFARK+QR   PD K+P    ATEFVSF+NS
Sbjct: 61  ELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNS 120

Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG 259
           FHGRT+GALALTSKE YR+PFEP+MPGV FVEYGN+EA RKLIQ GKTAAVFVEP+QGEG
Sbjct: 121 FHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEG 180

Query: 260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG 319
           GIY ATKEFLQ LR  CD+AGALLVFDEVQCGLGRTGYLWAHE YG+ PDIMTLAKPLAG
Sbjct: 181 GIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAG 240

Query: 320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------- 370
           GLPIGA LVTEKVASAIN GDHGSTFAG PLVCNAA+AVLDKIS P FLAS         
Sbjct: 241 GLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLR 300

Query: 371 -----KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPL 425
                KL  NPHVK+VRG+GL++GI+ DV A P+VDACRDSGLLVLTAGKG+VVRLVPPL
Sbjct: 301 ELLRRKLGGNPHVKEVRGVGLLVGIQLDVPAGPLVDACRDSGLLVLTAGKGDVVRLVPPL 360

Query: 426 IISEQELDQAVEILCKTLPVLD 447
           +ISE EL+QAVEIL   LP LD
Sbjct: 361 VISEAELEQAVEILADCLPALD 382

Length = 382

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score =  545 bits (1408), Expect = 0.0
 Identities = 194/397 (48%), Positives = 260/397 (65%), Gaps = 20/397 (5%)

Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
            ++ ++E EKK L+ TY R P+    G+G +L+D +G+EYLD  +GIAVN LGH     +
Sbjct: 2   TSEAIIELEKKYLMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLV 61

Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
           +A+ +QA  L H SN+YY  PQ ELA++LV  S  D+VFF N+G EANEAAIK ARK+  
Sbjct: 62  EAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGH 121

Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
                      E ++  NSFHGRT+  L+ T +  Y+  FEP++ G  +V + +IEA + 
Sbjct: 122 KKG----IEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKA 177

Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
            I   KTAAV +EPIQGEGG+  A KE+LQ LR+ CD+ G LL+ DEVQ G+GRTG L+A
Sbjct: 178 AITD-KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFA 236

Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
           ++HYGI PDIMTLAK L GG+PIGA L  EKVA     GDHGSTF G+PL C AA+AV++
Sbjct: 237 YQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIE 296

Query: 361 KISNP----------AFLASKL----ARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDS 406
            I              +L +KL     + P +K+VRGLGL+IGIE D  A  +V    + 
Sbjct: 297 IIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDRPAAEIVKKALEK 356

Query: 407 GLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           GLL+   G  NV+RL+PPLIIS++E+D+AV+ L + L
Sbjct: 357 GLLINVTG-DNVLRLLPPLIISKEEIDEAVDRLEEVL 392

Length = 396

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  519 bits (1339), Expect = 0.0
 Identities = 198/400 (49%), Positives = 260/400 (65%), Gaps = 25/400 (6%)

Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
                +E   K L+ TY R PVV+  G+G  ++D +GREYLD ++GIAVN LGH     +
Sbjct: 5   LTAATIELFMKYLMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALV 64

Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQ 179
           +A+ +QA  L HVSN++Y+ PQ ELA++LV  S FADRVFF N+G EANEAA+K ARK+ 
Sbjct: 65  EALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYT 124

Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
                      ++ ++F NSFHGRT+GAL+ T +  YR  F P++PG   V + +IEA  
Sbjct: 125 GDPE------KSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALE 178

Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
             I    TAAV VEPIQGEGG+  A  EFL+ LR+ CD+ GALL+ DEVQ GLGRTG L+
Sbjct: 179 AAIDE-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF 237

Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
           A+EHYG+ PDI+TLAK L GG PIGA L TE++ASA   GDHGSTF G+PL C  A+AVL
Sbjct: 238 AYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVL 297

Query: 360 DKISNPAF--------------LASKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDAC 403
           + +                   L     R P VK+VRG GL+IGIE      A  +V A 
Sbjct: 298 EVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRARDIVRAL 357

Query: 404 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           R+ G+LVL AG  NV+R +PPL+I+E+E+D+A++ L + L
Sbjct: 358 REEGVLVLPAG-PNVIRFLPPLVITEEEIDEALDALERAL 396

Length = 404

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  470 bits (1211), Expect = e-165
 Identities = 191/380 (50%), Positives = 252/380 (66%), Gaps = 19/380 (5%)

Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           L+ TY R PV +  GKG  +YD  G+EYLD  +GIAVN+LGH     ++A+ +Q   L H
Sbjct: 2   LMNTYGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVH 61

Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
           VSN+YY+ PQ ELA++LV  S ADRVFF N+G EANEAA+K ARK+      + K+    
Sbjct: 62  VSNLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKK---- 117

Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
            ++F NSFHGRTMGAL+ T +  Y+  FEP++PG ++  Y +IE+ +K I   +TAAV V
Sbjct: 118 IIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID-DETAAVIV 176

Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
           EPIQGEGG+  A+ EFL+ LR+ C D  ALL+FDEVQ G+GRTG  +A+EHYGI PDI+T
Sbjct: 177 EPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIIT 236

Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL---- 368
           LAK L GG+PIGA L  E+VA A   GDHGSTF G+PL C AA+AVL+ I     L    
Sbjct: 237 LAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVK 296

Query: 369 ------ASKLA---RNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVV 419
                   +L    +N   K+VRG GL++GIE +     +V    + GLLV  AG   V+
Sbjct: 297 EKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEAPCKDIVKKALEKGLLVNCAG-PKVL 355

Query: 420 RLVPPLIISEQELDQAVEIL 439
           R +PPLII+++E+D+AV  L
Sbjct: 356 RFLPPLIITKEEIDEAVSAL 375

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score =  460 bits (1186), Expect = e-161
 Identities = 182/387 (47%), Positives = 243/387 (62%), Gaps = 22/387 (5%)

Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           L+  YNRA +    G+G  L D +G  YLD +SGIAVN+LGH     ++A+ +QA  L H
Sbjct: 6   LLPVYNRADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWH 65

Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS-NPDSKEPAT 191
           VSN+Y    Q  LA+RLV  SFAD+VFF+N+G EA E AIK AR++     +P+      
Sbjct: 66  VSNLYRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPER----Y 121

Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251
             ++F  +FHGRT+  +A   +E Y   F P++PG + V +G+IEA +  I P  TAA+ 
Sbjct: 122 RIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP-NTAAIL 180

Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311
           +EPIQGEGGI  A  EFL+ LR  CD+ G LL+FDEVQCG+GRTG L+AHE  G+ PDIM
Sbjct: 181 IEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIM 240

Query: 312 TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA-- 369
            +AK + GG P+GA L TE+ A  +  G HGST+ G+PL      AVLD I  P FL   
Sbjct: 241 AVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNV 300

Query: 370 --------SKLA----RNPHV-KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKG 416
                    KL     R P V ++VRG GL++G++  V    +V A RD GLL + AG  
Sbjct: 301 QRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVPNRDLVQALRDEGLLTVGAGD- 359

Query: 417 NVVRLVPPLIISEQELDQAVEILCKTL 443
           NVVRL+PPLII+E+E+D+A+E L +  
Sbjct: 360 NVVRLLPPLIITEEEIDEALERLERAA 386

Length = 389

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  430 bits (1107), Expect = e-149
 Identities = 169/422 (40%), Positives = 239/422 (56%), Gaps = 54/422 (12%)

Query: 66  MEAEKKLLVGTYN--RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAV 123
            E ++K+L   Y     P+V+   +G  LYD +G  YLD  SGI V  LGH   + ++A+
Sbjct: 2   FERDRKVLWHGYTVRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEAL 61

Query: 124 VDQANVLTHVSNMY-YSIPQIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQR 180
            +Q   LTH S  + Y+ P +ELA+ L+A +    D+VFF N+GTEA EAA+K AR +  
Sbjct: 62  KEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTG 121

Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN------ 234
                        +SF  ++HGRT+GAL+LT  + YR  F P++PGV  V Y        
Sbjct: 122 RKK---------IISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPA 172

Query: 235 -----IEATRKLI--QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
                +EA  + +   P + AAV VEPIQGEGG+      +L+ LR+ C   G LL+ DE
Sbjct: 173 ELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADE 232

Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN--YGDHGSTF 345
           VQ G GRTG ++A EH+G+ PDI+TL K L GGLP+GA L  E++  A     G HG TF
Sbjct: 233 VQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTF 292

Query: 346 AGSPLVCNAAIAVLDKISNP----------AFLASKL----ARNPHVKDVRGLGLIIGIE 391
            G+PL C AA+AVL+ +              +L  +L     ++P V DVRG GL+IGIE
Sbjct: 293 GGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIE 352

Query: 392 F----------DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 441
                         A  ++ A  + GLL+  +G GNV+RL+PPLII+E+E+D+ ++ L +
Sbjct: 353 LVKDRATKPPDKELAAKIIKAALERGLLLRPSG-GNVIRLLPPLIITEEEIDEGLDALDE 411

Query: 442 TL 443
            L
Sbjct: 412 AL 413

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score =  414 bits (1066), Expect = e-143
 Identities = 174/387 (44%), Positives = 226/387 (58%), Gaps = 28/387 (7%)

Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           ++  Y   P+ L  G+G  ++D +G+EYLDL  GIAVNALGH     ++AV  Q   L H
Sbjct: 18  MMNNYGTPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGH 77

Query: 133 VSNMYYSIPQIELAKRLVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
           VSN++ + PQI LA+RLV    A    RVFF N+G EANEAA K AR   R         
Sbjct: 78  VSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGR--------- 128

Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249
            T+ V+    FHGRTMGALALT +   R+PFEP+  GV  V YG+++A    +    TAA
Sbjct: 129 -TKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD-DDTAA 186

Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
           VF+EPIQGE G+      +L   R+  D  GALLV DEVQ G+GRTG  +AH+H G+ PD
Sbjct: 187 VFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPD 246

Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369
           ++TLAK L GGLPIGA L     A  +  G HGSTF G+P+ C AA+AVLD I++   L 
Sbjct: 247 VVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLE 306

Query: 370 SKLAR------------NPHVKDVRGLGLIIGIEFDVS-ATPVVDACRDSGLLVLTAGKG 416
           +                +P V  VRG GL++GI      A  V  A R++G LV  A   
Sbjct: 307 NAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAPVAKAVEAAAREAGFLV-NAVAP 365

Query: 417 NVVRLVPPLIISEQELDQAVEILCKTL 443
           +V+RL PPLII++ ++D  V  L   L
Sbjct: 366 DVIRLAPPLIITDAQVDAFVAALPAIL 392

Length = 398

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score =  376 bits (967), Expect = e-128
 Identities = 166/383 (43%), Positives = 234/383 (61%), Gaps = 27/383 (7%)

Query: 76  TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN 135
           TY R P+ +  GKG K+ D  G+ YLD +SGIAV  LGH      KAV +Q + + HVSN
Sbjct: 7   TYGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSN 66

Query: 136 MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF-QRHSNPDSKEPATEFV 194
           ++ +  Q E+A  L   S  D VFF N+G EANEAA+K ARK   +           + V
Sbjct: 67  LFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKS----------KIV 116

Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254
           +F  SFHGRT G ++ T +E  +  F P++PG   V + +I+A ++++   + AAV +E 
Sbjct: 117 TFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE-EVAAVMLEV 175

Query: 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA 314
           +QGEGG+  A   FLQ ++  C   GALL+ DEVQ G+GRTG L+A+E +G+ PDI+T+A
Sbjct: 176 VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVA 235

Query: 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA----- 369
           K L  G+P+GA +  +++ +A   G HGSTF G+PL   AA  VL  I  P+FL      
Sbjct: 236 KGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEK 295

Query: 370 -----SKLARN----PHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVR 420
                 KL         VK++RG GL+IGIE      PV++  R+ GLLVL+AG  NV+R
Sbjct: 296 GEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEEVAPVIEQLREEGLLVLSAGP-NVIR 354

Query: 421 LVPPLIISEQELDQAVEILCKTL 443
           L+PPL+++++ELDQAV +L K L
Sbjct: 355 LLPPLVVTKEELDQAVYLLKKVL 377

Length = 377

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  377 bits (970), Expect = e-128
 Identities = 173/457 (37%), Positives = 240/457 (52%), Gaps = 64/457 (14%)

Query: 45  VEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRA--PVVLASGKGCKLYDAEGREYLD 102
             + +         G    E++E  ++ L  +Y R   P+V+   +G  LYD +G EYLD
Sbjct: 1   QSLPEEPDIVTEAPGPKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLD 60

Query: 103 LSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVAC---SFADRV 158
             SGIAV  LGH     ++AV  Q   L H      Y  P +ELA++L A    S   +V
Sbjct: 61  FLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKV 120

Query: 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYR 217
           FF N+G EA EAAIK AR +               ++F  +FHGRT+GAL+LT SK  Y+
Sbjct: 121 FFGNSGAEAVEAAIKIARAYTGRPG---------VIAFDGAFHGRTLGALSLTGSKPPYK 171

Query: 218 SPFEPVMPGVNFVEYGN-----------------IEATRKLI-----QPGKTAAVFVEPI 255
           + F P+ PGV  V Y N                 +E   + +      P + AA+ +EPI
Sbjct: 172 AGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPI 231

Query: 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315
           QGEGGI    K FL+ LR  C + G LL+ DEVQ G GRTG ++A EH+G+ PDI+TLAK
Sbjct: 232 QGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAK 291

Query: 316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP---------- 365
            L GGLP+ A +   ++      G HG TF G+P+ C AA+AVLD I             
Sbjct: 292 SLGGGLPLSAVVGRAEIMDWPPGG-HGGTFGGNPVACAAALAVLDVIEEENLLERAAELG 350

Query: 366 AFLASKL----ARNPHVKDVRGLGLIIGIEFDVS----------ATPVVDACRDSGLLVL 411
            +L  +L     ++P + DVRGLGL+IG+E              A  +V    + GLL+L
Sbjct: 351 EYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLL 410

Query: 412 TAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447
           T G  GNV+R++PPL IS++ELD+ ++IL + L    
Sbjct: 411 TCGPHGNVLRILPPLTISDEELDEGLDILEEALKEAL 447

Length = 447

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score =  371 bits (954), Expect = e-126
 Identities = 163/393 (41%), Positives = 235/393 (59%), Gaps = 27/393 (6%)

Query: 71  KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
           +++V  Y  A  +   G+G +++D +G+EY+D + GIAV ALGH     +KA+ +Q   L
Sbjct: 13  EVMVPNYAPAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKL 72

Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK--FQRHSNPDSKE 188
            H+SN++ + P + LAK+L+  +FA+RVFF+N+G EANEAA K AR+    RH  P+   
Sbjct: 73  WHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHG-PEK-- 129

Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
             TE ++F NSFHGRT+  +++  +  Y   F P    +  V + ++ A + +I    T 
Sbjct: 130 --TEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDD-HTC 186

Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
           AV VEPIQGEGG+  AT EFLQ LR+ CD   ALL+FDEVQ G+GRTG L+A+ HYG+ P
Sbjct: 187 AVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTP 246

Query: 309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368
           DI+T AK L GG PIGA L T ++AS    G HGST+ G+PL C  A AV D I+ P  L
Sbjct: 247 DILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVL 306

Query: 369 ASKLARNPHVK--------------DVRGLGLIIGIE----FDVSATPVVDACRDSGLLV 410
               AR                   ++RG+GL+IG E    +   A   ++A  + G++V
Sbjct: 307 EGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMV 366

Query: 411 LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           L AG  +V+R  P L+I E ++D+ +    K +
Sbjct: 367 LVAGP-DVLRFAPSLVIEEADIDEGLARFEKAV 398

Length = 403

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score =  360 bits (926), Expect = e-122
 Identities = 145/396 (36%), Positives = 219/396 (55%), Gaps = 27/396 (6%)

Query: 76  TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN 135
            Y+  PVVL  GKG  ++D EG++Y D  S  +    GH     + A+++QA  LT  S 
Sbjct: 9   NYHPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSR 68

Query: 136 MYYSIPQIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARK--FQRHSNPDSKEPATE 192
            +Y+   + LA++ +   F  D+V   N+G EA E A+KFARK  ++    P+++    +
Sbjct: 69  AFYN-DVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQ---AK 124

Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
            +    +F GRT+GA + ++     + F P +PG   V+Y ++EA  KL+Q    AA  V
Sbjct: 125 IIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIV 184

Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
           EPIQGE G+      +L+ + + C     LL+ DE+Q GLGRTG L AH+H G+ PDI+ 
Sbjct: 185 EPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVL 244

Query: 313 LAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF---- 367
           L K L+GGL PI A L  + V   I  G+HGST+ G+PL C  A+  L+ +         
Sbjct: 245 LGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENA 304

Query: 368 ----------LASKLARNPHVKDVRGLGLIIGIEFD----VSATPVVDACRDSGLLVLTA 413
                     L   L ++P VK++RG GL+  I FD    V+A  +    +++GLL    
Sbjct: 305 QRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPT 364

Query: 414 GKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449
              N++R  PPL+I++++LDQA+EI+ K L   DSN
Sbjct: 365 H-DNIIRFAPPLVITKEQLDQALEIIKKVLKSFDSN 399

Length = 400

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score =  358 bits (921), Expect = e-121
 Identities = 164/382 (42%), Positives = 233/382 (60%), Gaps = 27/382 (7%)

Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           +V  Y  AP +   G+G +++D +G+EY+D + GIAVNALGH   + +KA+++QA+ L H
Sbjct: 10  MVPNYAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH 69

Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF--QRHSNPDSKEPA 190
           + N Y + P + LAK+LV  +FAD+VFF N+G EANEAA+K AR++   +H    S    
Sbjct: 70  IGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKS---- 125

Query: 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250
            E V+F NSFHGRT+  +++  +  Y   F P+  G+    Y ++ A + LI   KT AV
Sbjct: 126 -EIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISD-KTCAV 183

Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
            VEPIQGEGG+  A   FL+ LR+ CD   ALL+FDEVQ G+GRTG L+A+ HYG+ PDI
Sbjct: 184 IVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDI 243

Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
           +T AK L GG PIGA L T ++A+ +  G HG+T+ G+PL C  A  VLD ++ P  LA 
Sbjct: 244 LTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAG 303

Query: 371 KLARNPHVKD--------------VRGLGLIIGIEFDVS----ATPVVDACRDSGLLVLT 412
              R+    D              +RG GL+IG     +    A   V+A  + G++ L 
Sbjct: 304 VKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALI 363

Query: 413 AGKGNVVRLVPPLIISEQELDQ 434
           AG  NVVR  P L+IS+ ++D+
Sbjct: 364 AG-PNVVRFAPSLVISDDDIDE 384

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score =  357 bits (919), Expect = e-120
 Identities = 166/435 (38%), Positives = 234/435 (53%), Gaps = 61/435 (14%)

Query: 59  GRNNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
           G   +E++E ++K L  +  R  P+V+  G+G  + D +G  YLD ++GIAV  +GH   
Sbjct: 14  GPKAREIIERDEKYLAQSTRRWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHP 73

Query: 118 DWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVA---CSFADRVFFSNTGTEANEAAIK 173
             +KAV +QA    H S   +Y  P +ELA+RLV      F  +VFF+N+GTE+NEAAIK
Sbjct: 74  KVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIK 133

Query: 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEY 232
            AR                 ++F  +FHGRT G+L+LT SK   R  F P+MPGV  V Y
Sbjct: 134 IARYHTGRK---------YIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPY 184

Query: 233 GN--------------IEAT---------RKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269
            N                A          +KL+ P + AA+ VEPIQGEGG     K F 
Sbjct: 185 PNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFF 244

Query: 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT 329
           + LR   D  G LL+ DEVQ G+GRTG ++A EH+G+ PDI+TLAK +AGGLP+GA +  
Sbjct: 245 KELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGR 304

Query: 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP-------------AFLASKLARNP 376
            ++      G H +TF G+P+   AA+A L+++                  L     +  
Sbjct: 305 AELMFLPP-GSHANTFGGNPVAAAAALATLEELEEGLLENAQKLGEYLRKELKELKEKYE 363

Query: 377 HVKDVRGLGLIIGIEF-DVSATP-------VVDACRDSGLLVLTAGKGNVVRLVPPLIIS 428
            + DVRGLGL+IG+E       P       V+      GLL+L AGK + +R++PPLII+
Sbjct: 364 FIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGK-SAIRIIPPLIIT 422

Query: 429 EQELDQAVEILCKTL 443
           E+E D  +EIL + +
Sbjct: 423 EEEADIGLEILEEAI 437

Length = 441

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score =  344 bits (884), Expect = e-115
 Identities = 162/381 (42%), Positives = 222/381 (58%), Gaps = 23/381 (6%)

Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           +V  Y  AP +   G+G +L+D +G+EY+D + GIAVNALGH      +A+ +QA+   H
Sbjct: 14  MVPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWH 73

Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
             N Y + P + LAK+L+  +FADRVFF N+G EANEAA+K ARK+        K   + 
Sbjct: 74  TGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHK---SG 130

Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
            V+F N+FHGRT+  ++   +  Y   F P+ P +    Y ++ +   LI   +T AV V
Sbjct: 131 IVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD-QTCAVIV 189

Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
           EPIQGEGG+  A K FLQ LR+ CD   ALL+FDEVQ G+GRTG L+A+ HYG+ PD++T
Sbjct: 190 EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLT 249

Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKL 372
            AK L GG PIGA L TEK AS +  G HG+T+ G+PL    A  VL+ I+ P  L    
Sbjct: 250 TAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVK 309

Query: 373 ARNPHVKD--------------VRGLGLIIGI----EFDVSATPVVDACRDSGLLVLTAG 414
            R+    +              +RGLGL+IG     E+   A  +      +G++VL AG
Sbjct: 310 QRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAG 369

Query: 415 KGNVVRLVPPLIISEQELDQA 435
             NVVR  P L ISE+E+   
Sbjct: 370 -PNVVRFAPALNISEEEITTG 389

Length = 406

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  335 bits (860), Expect = e-113
 Identities = 149/335 (44%), Positives = 192/335 (57%), Gaps = 32/335 (9%)

Query: 87  GKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIEL 145
            KG  LYD +GR YLD  SGIAV  LGH     ++AV +QA+ LTH S   + + P ++L
Sbjct: 5   AKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQL 64

Query: 146 AKRLVA--CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGR 203
           A++L        DRVFF N+G+EANE AIK AR++ +      K   T+ ++F+  FHGR
Sbjct: 65  AEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGK---TKIIAFSGGFHGR 121

Query: 204 TMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR-------------KLIQPGKTAAV 250
           T+GAL++T    Y+  F P +PGV F+ Y ++EA               K +     AAV
Sbjct: 122 TLGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLIKAVHDDNIAAV 181

Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
            VEPIQGEGG+      FL  LR+ C   G LL+ DEVQ G GRTG L+A EHYG+ PDI
Sbjct: 182 IVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPDI 241

Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA- 369
           MTLAK L GGLP+ A L T ++  A + G HG TF G+PL C AA+AVLD I +   L  
Sbjct: 242 MTLAKALTGGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQN 301

Query: 370 ------------SKLARNPHVKDVRGLGLIIGIEF 392
                         L   P + DVRG GL+I IE 
Sbjct: 302 AQEKGDYLRKGLLALQDKPVIGDVRGKGLMIAIEI 336

Length = 338

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score =  333 bits (855), Expect = e-111
 Identities = 151/410 (36%), Positives = 227/410 (55%), Gaps = 57/410 (13%)

Query: 82  VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSI 140
           + +  G+GC  Y  +G+EYLD +SGIAV  +GH     ++A+ +QA+ L H  S + Y  
Sbjct: 27  LPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYE 86

Query: 141 PQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
             ++LA+ L  +     D  FFSN+G EA E A+K A+         +K P    +SFT 
Sbjct: 87  SILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHV-------TKRPYI--ISFTG 137

Query: 199 SFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGN--------------IEATR---- 239
            FHGRT+GAL++T SK  YR  ++P++  V    Y                +E  R    
Sbjct: 138 CFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLES 197

Query: 240 ---KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
                + P + AAV +EP+ GEGG     K FL+ LR+ CD  G LL+FDEVQ G GRTG
Sbjct: 198 LFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG 257

Query: 297 YLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
             +A + +G+ PDIMT+AK +A GLP+ A + ++++      G HG+TF G+P+ C AA+
Sbjct: 258 EWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAAL 317

Query: 357 AVLDKISNP----------AFLASKL----ARNPHVKDVRGLGLIIGIEF-DVSATP--- 398
           A L+ I             A+   +L     ++P + DVRG+GL+IGIE  D    P   
Sbjct: 318 ATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGD 377

Query: 399 ----VVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTL 443
               ++D C + GLL    G  GNV+R++PPL ++++E+D+ ++IL + L
Sbjct: 378 AVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEAL 427

Length = 433

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score =  318 bits (816), Expect = e-106
 Identities = 155/381 (40%), Positives = 217/381 (56%), Gaps = 27/381 (7%)

Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           L   Y RA +     +G  L D +G++YLD SSGI V  LG       +A+  QA ++ H
Sbjct: 4   LFQNYKRAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWH 62

Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
             N+Y +  Q E+A++L+        FF N+G EANEAAIK ARK              E
Sbjct: 63  SPNLYLNSLQEEVAQKLIG-DKDYLAFFCNSGAEANEAAIKIARKATGKQ---------E 112

Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
            ++F NSFHGRT G+++ T ++  +  F   +P  ++  + ++ + + L+    TAAV +
Sbjct: 113 IITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVN-KNTAAVML 171

Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
           E +QGE G+  A K+F++ L D C + G LL+ DEVQ G+GRTG L+A EHYGI PDI T
Sbjct: 172 ELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFT 231

Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF----- 367
           LAK LA G+P+GA L    +  A  YG HGSTF G+ L   AA A LD +    F     
Sbjct: 232 LAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQAL 291

Query: 368 ---------LASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNV 418
                    L   L     V  VRGLG +IGIE     + +V+A RD GL+VLTAG  NV
Sbjct: 292 ENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTADLSQLVEAARDKGLIVLTAGT-NV 350

Query: 419 VRLVPPLIISEQELDQAVEIL 439
           +RL+PPL ++++E++Q + IL
Sbjct: 351 IRLLPPLTLTKEEIEQGIAIL 371

Length = 375

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score =  315 bits (808), Expect = e-104
 Identities = 153/379 (40%), Positives = 215/379 (56%), Gaps = 24/379 (6%)

Query: 78  NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY 137
           NR  +V   GKG  LYD  G+ YLD   G AVN LGH +   ++A+  QA  L + S  +
Sbjct: 16  NRPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAF 75

Query: 138 YSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
           Y+ P  +LA  L   S  D+VFF+N+G EANE AIK ARK+ R      K  A E ++F 
Sbjct: 76  YNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKH----KNGAYEIITFD 131

Query: 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG 257
           +SFHGRT+  ++ + K  + + F P +PG    E  +I +  KLI   KT AV +EP+QG
Sbjct: 132 HSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEPVQG 190

Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
           EGG+  AT+EF+Q LR      G LL+ DEVQ G GRTG L+A+E  GI PDIMTL K +
Sbjct: 191 EGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGI 250

Query: 318 AGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPH 377
            GG+P+ A L   +VA     GD G T+ G+PL+    +AV+ ++  P FL    AR  +
Sbjct: 251 GGGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEY 309

Query: 378 VKD-------------VRGLGLIIGIEFDVSATP-VVDACRD---SGLLVLTAGKGNVVR 420
           +K+              RG GL+  +       P +V+  RD    GLL L A + N++R
Sbjct: 310 LKEKLLELSEERGLEGERGEGLLRALLLGKDIGPQIVEKARDMQPDGLL-LNAPRPNLLR 368

Query: 421 LVPPLIISEQELDQAVEIL 439
            +P L ++ +E+DQ + +L
Sbjct: 369 FMPALNVTTEEIDQMIAML 387

Length = 395

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  299 bits (767), Expect = 3e-97
 Identities = 146/425 (34%), Positives = 214/425 (50%), Gaps = 64/425 (15%)

Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
               P V+   +G  L D +GR YLD  SG+     GHG  +  +A+  Q + L HV   
Sbjct: 23  PLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFG 82

Query: 137 YYS-IPQIELAKRLVA---CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-T 191
            ++  P IELA++L         D VFF+++G+EA E A+K A ++ R       +P   
Sbjct: 83  GFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARG----QPQRK 138

Query: 192 EFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVE----YGN------------ 234
           +F+S  N +HG T+GA+++        + ++P++P V  +     Y              
Sbjct: 139 KFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAE 198

Query: 235 -IEATRKLIQ---PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ 289
             +    LI    P   AA  VEP+  G GG+      +L+ +R+ CD  G LL+ DEV 
Sbjct: 199 AADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVA 258

Query: 290 CGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGS 343
            G GRTG ++A EH GI PDI+ LAK L GG LP+ A L ++++  A + GD     HG 
Sbjct: 259 TGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGH 318

Query: 344 TFAGSPLVCNAAIAVLDKISNP--------------AFLASKLARNPHVKDVRGLGLIIG 389
           T++G+PL C AA+A LD +                 A L + LA +P V DVRGLGLI  
Sbjct: 319 TYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGA 378

Query: 390 IEFDVS-ATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEI 438
           IE     AT           V  A  + GLL+     G+V+ L+PPLII+ +E+D+ V+ 
Sbjct: 379 IELVADKATKTPFEARVGARVRAAALERGLLIRPL--GDVIYLMPPLIITREEIDELVDA 436

Query: 439 LCKTL 443
           L + L
Sbjct: 437 LREAL 441

Length = 449

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score =  292 bits (748), Expect = 4e-95
 Identities = 161/378 (42%), Positives = 224/378 (59%), Gaps = 28/378 (7%)

Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
           Y    VVL  G+G +++D +GREYLDL++GIAV  LGH D D + A+ +QA  L H SN+
Sbjct: 19  YRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNV 78

Query: 137 YYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSN--PDSKEPATEF 193
           +YS P ++LA+ LV  S FA++VF  N+GTEANEAAIK  RK+        D +      
Sbjct: 79  FYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRV----I 134

Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253
           V+F  SFHGRT+ A+  T++  Y+  +EP+  G  +V++ ++EA    +  G  AAV +E
Sbjct: 135 VTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLE 194

Query: 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313
           PIQGEGG+  A   FL  +R  CD   ALLV DE+QCG+GRTG L+AH    + PDI+TL
Sbjct: 195 PIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTL 254

Query: 314 AKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLA 373
           AK L GG PIGA L   KVA  + +G HG+TF G+PL    A   L K+++P  +A+ +A
Sbjct: 255 AKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQ-IAANVA 313

Query: 374 RNPHV---------------KDVRGLGLIIGI----EFDVSATPVVDACRDSGLLVLTAG 414
           R                     VRG GL++G          A  ++D   + GLL+L AG
Sbjct: 314 RQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAG 373

Query: 415 KGNVVRLVPPLIISEQEL 432
             +V+R VP L +++ EL
Sbjct: 374 P-DVLRFVPALNLTDAEL 390

Length = 408

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score =  285 bits (732), Expect = 1e-92
 Identities = 149/404 (36%), Positives = 217/404 (53%), Gaps = 28/404 (6%)

Query: 63  KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADWIK 121
           +E +E E K     Y+  PVV +  +G  ++D EG+ YLD LS+  AVN  GH     +K
Sbjct: 2   EEAIERENKYGAHNYHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQ-GHCHPKIVK 60

Query: 122 AVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK--FQ 179
           A+ +QA  LT  S  +Y+    E A+ +      D+V   NTG EA E AIK ARK  ++
Sbjct: 61  ALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYK 120

Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
               P+++      VS   +FHGRT+GA+++++    R+ F P +PG   + Y N+EA  
Sbjct: 121 VKGIPENQ---AIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALE 177

Query: 240 K-LIQPGKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
           + L   G     F VEPIQGE G+      +L+ +R+ C     LL+ DE+Q GLGRTG 
Sbjct: 178 EALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK 237

Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
           L   +H  + PDI+ L K L+GG  P+ A L  + V   I  G+HGST+ G+PL C  A+
Sbjct: 238 LLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAV 297

Query: 357 AVLDKISNPAFL--ASKLA----------RNPHVKDVRGLGLIIGIEFDVSATPV--VDA 402
           A L+ +        A KL             P + +VRG GL+  I  D S T     D 
Sbjct: 298 AALEVLEEEKLAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESKTGRTAWDL 357

Query: 403 C---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           C   ++ GLL      GN++RL PPL+I+E++LD+ +EI+ K +
Sbjct: 358 CLKLKEKGLLAKPT-HGNIIRLAPPLVITEEQLDEGLEIIKKVI 400

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score =  285 bits (732), Expect = 2e-92
 Identities = 139/413 (33%), Positives = 215/413 (52%), Gaps = 60/413 (14%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           P+ +   +G  LYD +GREY+D  S   VN  GH   +   A+ +Q + L HV  M+  +
Sbjct: 14  PLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDKLEHV--MFGGL 71

Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
              P IELA+RLV  +    ++VFFS++G+ A E A+K A ++ ++     K   T F++
Sbjct: 72  THEPAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGK---TRFLA 128

Query: 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN--------------IEATRKL 241
           F N +HG T GA+++     + + FEP++  V F+                  + A   L
Sbjct: 129 FRNGYHGDTFGAMSVGDVGGFHALFEPLLFEVVFIPAPPCYRCWDPDDCEAECLAALEAL 188

Query: 242 IQ--PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
           ++    + AA  VEP+ QG GG+     E+L+ LR+ CD+ G LL+ DE+  G GRTG L
Sbjct: 189 LEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGKL 248

Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGSTFAGSPL 350
           +A EH G+ PDI+ L+K L GG LP+ A L T+++  A  Y D       HG T+ G+PL
Sbjct: 249 FACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAF-YSDDEGKAFMHGHTYTGNPL 307

Query: 351 VCNAAIAVLDKISNPAFLA-------------SKLARNPHVKDVRGLGLIIGIEFDVSAT 397
            C AA+A LD +    +L              + L  +P V DVR LG I  +E      
Sbjct: 308 ACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPLRDHPGVADVRVLGAIGAVELVRDVE 367

Query: 398 P-----VVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           P     +     + G+L+  L    GNV+ L+PP II+++EL++    + + +
Sbjct: 368 PYIGAKIQQFFLERGVLLRPL----GNVIYLMPPYIITDEELEKLTAAIKEAI 416

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score =  269 bits (689), Expect = 8e-87
 Identities = 148/363 (40%), Positives = 208/363 (57%), Gaps = 23/363 (6%)

Query: 79  RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
           R  + L  G+G  ++D++GR YLDL +GI VN LGH   +W++ + +Q   L     M+ 
Sbjct: 5   RKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFE 64

Query: 139 SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
              + E+ + L      + V+  N+GTEA EAA+KFAR +             E ++ TN
Sbjct: 65  HEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRK---------EIIAMTN 115

Query: 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGE 258
           +FHGRTMGAL+ T K  YR  FEP++PG   + + ++EA ++ I   +TAAV  EPIQGE
Sbjct: 116 AFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITK-ETAAVIFEPIQGE 174

Query: 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA 318
           GGI  A +EF++ LRD  +D GALL+ DEVQ GL RTG   A EHY + PDI+T+ K + 
Sbjct: 175 GGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIG 233

Query: 319 GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLA----- 373
            G+P+   L    V      G HGSTF G+PL C  A+AV  +I     L  K       
Sbjct: 234 NGVPVSLTLTNFDVER----GKHGSTFGGNPLACK-AVAVTLRILRRERLVEKAGEKFIE 288

Query: 374 -RNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQEL 432
            +   V   RG GL+IGI         V+  ++ G LV TAG+  V+RL+PPLIIS+  +
Sbjct: 289 IKGERVVTTRGRGLMIGIVLKKPVGKYVEELQNRGYLVHTAGQ-RVIRLLPPLIISKDTM 347

Query: 433 DQA 435
           ++A
Sbjct: 348 EEA 350

Length = 364

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score =  266 bits (683), Expect = 2e-85
 Identities = 140/391 (35%), Positives = 210/391 (53%), Gaps = 22/391 (5%)

Query: 63  KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADWIK 121
           ++++E         Y+  P+V++  +G  + D EG  Y+D LS+  AVN  GH     I+
Sbjct: 5   EKIIELTNHYGAHNYHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQ-GHRHPKIIQ 63

Query: 122 AVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK--FQ 179
           A+ DQA+ +T  S  ++S       +++   +  D V   NTG EA E AIK AR+  + 
Sbjct: 64  ALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYD 123

Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
                 +K    E ++   +FHGRTM A++L+S+E Y+  F P++PG+  + YG++EA +
Sbjct: 124 VKGVEPNK---AEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALK 180

Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
             I P  TAA  VEPIQGE GI    + FL+  R+ C +   L + DE+Q GLGRTG L+
Sbjct: 181 AAITP-NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF 239

Query: 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAV 358
           A +   + PD+  L K L GG  PI        +      G HGSTF G+PL C  +IA 
Sbjct: 240 ACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAA 299

Query: 359 LDKISNP----------AFLASKLAR--NPHVKDVRGLGLIIGIEFDVSATPVVDACRDS 406
           L+ +              +   +L    NP +K+VRG GL IG+E +  A P  +A ++ 
Sbjct: 300 LEVLEEEKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGLFIGVELNEPARPYCEALKEE 359

Query: 407 GLLVLTAGKGNVVRLVPPLIISEQELDQAVE 437
           GLL     +  V+R  PPL+I+++ELD A E
Sbjct: 360 GLLCKETHE-TVIRFAPPLVITKEELDWAFE 389

Length = 396

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score =  255 bits (654), Expect = 2e-80
 Identities = 142/391 (36%), Positives = 213/391 (54%), Gaps = 43/391 (10%)

Query: 85  ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQ-ANVLTHVSNMYYSIPQI 143
           A G    L D +G+E++D   G  +  +GH +   + AV +Q A    H   +   + + 
Sbjct: 70  AGGLNT-LVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPL-RA 127

Query: 144 ELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFH 201
            LAK L A +       FF N+GTE+ EAA+K A+ +Q      S      F++ + +FH
Sbjct: 128 MLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQ------SPRGKFTFIATSGAFH 181

Query: 202 GRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK-----TAAVFVEPIQ 256
           G+++GAL+ T+K  +R PF P++PG   V +GNIEA R  +   K      AAV +EPIQ
Sbjct: 182 GKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQ 241

Query: 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP 316
           GEGG+    + +L  +R  CD+ GALL+ DEVQ G+GRTG ++A EH  + PDI+ LAK 
Sbjct: 242 GEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKA 301

Query: 317 LAGG-LPIGAALVTEKVASAI--NYGDHGSTFAGSPLVCNAAIA---VLDKISNPA---- 366
           L GG +PIGA + TE+V S +  N   H +TF G+PL C AA+A   VL + + PA    
Sbjct: 302 LGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQ 361

Query: 367 ---FLASKLAR----NPH-VKDVRGLGLIIGIEFDVSATPVVDACRDSGLL---VLTAGK 415
              +L     +     P  V++ RG G+++ IEF  +      A   S +    VL AG 
Sbjct: 362 KGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFA---SEMFRQRVLVAGT 418

Query: 416 GN---VVRLVPPLIISEQELDQAVEILCKTL 443
            N    +R+ PPL ++ ++ +Q ++   K L
Sbjct: 419 LNNAKTIRIEPPLTLTIEQCEQVLKAARKAL 449

Length = 459

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  243 bits (622), Expect = 6e-76
 Identities = 131/415 (31%), Positives = 197/415 (47%), Gaps = 65/415 (15%)

Query: 78  NRAPVVLASGKGCKLYDAEGREYLDLSSGIA---VNALGHGDADWIKAVVDQANVLTHVS 134
           +  P+ +   +G  LY A+GRE +D    I+   V   GH      +A+ +Q + L HV 
Sbjct: 22  HPPPIPIVRAEGAYLYLADGRELID---AISSWWVATHGHNHPYIDQAIREQLDRLDHV- 77

Query: 135 NMYYSI---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
            ++      P   LA+RLVA +    D VFFS++G+ A E A+K A ++ R+     +  
Sbjct: 78  -IFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRG---EPG 133

Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV-------EYGNIEATRKLI 242
            + F+S    +HG T+G +++  +    + + P++             E   ++A   L+
Sbjct: 134 RSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALL 193

Query: 243 QP--GKTAAVFVEP-IQGEGG--IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
           +   G+ AA  VEP +QG GG   Y     +L  LR  CD  G LL+FDE+  G GRTG 
Sbjct: 194 EKHAGEIAAFIVEPLVQGAGGMLFYDP--RYLAELRRICDRHGVLLIFDEIATGFGRTGT 251

Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGSPL 350
           L+A E  G+ PDIM L+K L GG LP+ A L T ++  A    D      H  ++  +PL
Sbjct: 252 LFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPL 311

Query: 351 VCNAAIAVLD------------KISNPAFLASKLAR---NPHVKDVRGLGLIIGIEFDVS 395
            C AA A LD             +S  A LA  L      P V DVR LG I  +E D  
Sbjct: 312 ACAAANASLDLFEDEPVLERVAALS--AGLAEGLEPFRDLPGVADVRVLGAIGAVELDRP 369

Query: 396 ATPVV-----DACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
                         + G+L+  L    GN + L+PP II+ +ELD+  + + +  
Sbjct: 370 VLERDGPALRAFALERGVLLRPL----GNTIYLMPPYIITAEELDRITDAIVEVA 420

Length = 423

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score =  243 bits (623), Expect = 1e-75
 Identities = 145/428 (33%), Positives = 214/428 (50%), Gaps = 32/428 (7%)

Query: 50  AARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIA 108
              GSA  L  ++  ++E E+K     Y+  PVV +  KG +++D EG++YLD LS+  A
Sbjct: 27  LPEGSAPSLSDSSAHLIELEEKYSAHNYHPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSA 86

Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEAN 168
           VN  GH     IKA+ +QA  LT  S  +Y+    E A+ L +    D V   NTG E  
Sbjct: 87  VNQ-GHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGV 145

Query: 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN 228
           E AIK ARK+        K  A   VS    FHGRT+ A++++        F P++PG  
Sbjct: 146 ETAIKLARKWGYEKKGIPKNEAI-IVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHL 204

Query: 229 FVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286
            V++G+++A  K+ +    + AA   EPIQGE G+      +L+ +R+ C     L++ D
Sbjct: 205 KVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIAD 264

Query: 287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTF 345
           E+Q GL RTG + A +   + PD++ L K L GG +P+ A L  + V   I  G+HGSTF
Sbjct: 265 EIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTF 324

Query: 346 AGSPLVCNAAIAVLDKISNPAF--------------LASKLARNPH-VKDVRGLGLIIGI 390
            G+PL    A+A L  + +                 L     + P  +K+VRG GL+  +
Sbjct: 325 GGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAV 384

Query: 391 EFD------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV----EILC 440
             +      VSA  V    ++ GLL        ++RL PPL ISE EL +      ++L 
Sbjct: 385 VLNSPKLGPVSAYDVCLKLKERGLLA-KPTHDTIIRLAPPLSISEDELQECSKALSDVLE 443

Query: 441 KTLPVLDS 448
             LP L S
Sbjct: 444 HDLPKLQS 451

Length = 474

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  240 bits (615), Expect = 8e-75
 Identities = 131/410 (31%), Positives = 216/410 (52%), Gaps = 62/410 (15%)

Query: 80  APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-Y 138
            P+V    +  K++D EG EY+D  S  AV  +GH +   +KA+ +Q + L H + +Y +
Sbjct: 23  YPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGF 82

Query: 139 SIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
            +  + LA++L+  +  D  +V F  +G++AN+ AIKFAR + +           + +S+
Sbjct: 83  PVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKR---------RKILSY 133

Query: 197 TNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK--------- 246
             S++G T GA++LT  +   R+    +   V+++ Y +        +PG          
Sbjct: 134 LRSYYGSTYGAMSLTGLDFPVRALVGEL-SDVHYIPYPDCYRCPFGKEPGSCKMECVEYI 192

Query: 247 ------------TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
                        AA+F EPIQG+ G+    +++ + L+   D+ G LLV DEVQ GLGR
Sbjct: 193 KEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGR 252

Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNA 354
           TG  +A EH+G+ PDI+TL KPL GGLPI A +   ++  ++    H  T +G+P+   A
Sbjct: 253 TGKWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAA 312

Query: 355 AIAVLDKISNPAFL--ASKLA------------RNPHVKDVRGLGLIIGIE--------- 391
           A+AV+++I     L  A KL             ++  + DVRG+GL+IG++         
Sbjct: 313 ALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKE 372

Query: 392 --FDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
             ++  A  VV    + GL+V T   GNV+R+ PPL I ++ LD+ ++IL
Sbjct: 373 RAYE-EAAKVVWRAWELGLIV-TFFSGNVLRIQPPLTIEKEVLDEGLDIL 420

Length = 443

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score =  239 bits (612), Expect = 1e-74
 Identities = 141/418 (33%), Positives = 198/418 (47%), Gaps = 58/418 (13%)

Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
           G     PV  A  +G  L D +G   +D +SGIAV  +GH     + AV  Q    TH  
Sbjct: 10  GVGVTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTC 69

Query: 135 NMYYSIPQ-IELAKRLVAC---SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
            M       + LA++L      S   +  F N+G EA E A+K AR +       +  P 
Sbjct: 70  FMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSY-------TGRPG 122

Query: 191 TEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEY----------------G 233
              V+F + FHGRT   +ALT+K   Y+S F P  P V                     G
Sbjct: 123 V--VAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDG 180

Query: 234 NIEATRKL----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ 289
            + A R +    +     AA+ +EP+QGEGG     K F+  L D C + G + + DEVQ
Sbjct: 181 ELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQ 240

Query: 290 CGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSP 349
            G  RTG ++A EH G  PD++T AK LA GLP+       ++  A   G  G T+AG+P
Sbjct: 241 TGFARTGAMFACEHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNP 300

Query: 350 LVCNAAIAVLDKISNPAFL--ASKLAR------------NPHVKDVRGLGLIIGIEFDVS 395
           L C AA+AVL  I +   +  A ++ R            +P + DVRGLG +I +E    
Sbjct: 301 LACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDP 360

Query: 396 ATPVVDA---------CRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTL 443
            T   DA            +GLL+LT G  GN++R +PPL I ++ L + ++ILC  L
Sbjct: 361 GTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAIL 418

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score =  238 bits (611), Expect = 3e-74
 Identities = 145/429 (33%), Positives = 214/429 (49%), Gaps = 75/429 (17%)

Query: 64  EVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
           E +E+E    V +Y R+ PVV    KG  LYD +G+EY+D  +G      GH +    +A
Sbjct: 8   ERLESE----VRSYCRSFPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQA 63

Query: 123 VVD--QANVLTHVSNMYYSIPQIELAKRLVACSFADRV-----------FFSNTGTEANE 169
           ++D  Q + +TH  +M+ +      AKR    +F + +           F   TGT A E
Sbjct: 64  LIDYLQRDGITHGLDMHTT------AKREFLETFEETILKPRGLDYKVQFTGPTGTNAVE 117

Query: 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF 229
           AA+K ARK    +N          V+FTN FHG T+G+LA+T   H R      +  V  
Sbjct: 118 AALKLARKVTGRTN---------IVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTR 168

Query: 230 VEYGN--------IEATRKLIQ-PG----KTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276
           + Y          +    KL++         AAV VE +QGEGGI  A+ E+LQ L   C
Sbjct: 169 MPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLC 228

Query: 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEK---- 331
                LL+ D++Q G GRTG  ++ E  GI PDI+TL+K ++G GLP+  ALV  K    
Sbjct: 229 RKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYGLPM--ALVLIKPELD 286

Query: 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKI-SNPAF--------------LASKLARNP 376
           V      G+H  TF G+ L    A A L++  S+ AF              L    A+ P
Sbjct: 287 VWKP---GEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYP 343

Query: 377 -HVKDVRGLGLIIGIEFDVS--ATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQEL 432
               +VRG G++ GI+F     A  +     ++GL++ T+G +  VV+L+PPL I E+EL
Sbjct: 344 GLGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEEL 403

Query: 433 DQAVEILCK 441
           ++ ++IL +
Sbjct: 404 EEGLDILEE 412

Length = 425

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score =  239 bits (612), Expect = 5e-74
 Identities = 145/426 (34%), Positives = 211/426 (49%), Gaps = 65/426 (15%)

Query: 75  GTYNRAPV-VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV 133
           G Y  APV V+  G+GC ++D  G+ YLD  +G+ V  +GHG A+  +A   QA  L   
Sbjct: 28  GAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFF 87

Query: 134 SNMYYS-IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARK-FQRHSNPDSKEP 189
               Y+  P IELA+RL A +  D  RVFF+  G+EA E+A K A++ F+    P     
Sbjct: 88  PLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGK--- 144

Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NF---VEYGN------ 234
             + +S   ++HG T GALA+T    +++PFEP++PG       NF    E G+      
Sbjct: 145 -HKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFG 203

Query: 235 ---IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV 288
               +   + I+   P   AAVF+EP+Q  GG +     + + +R+ CD    LLV DEV
Sbjct: 204 RWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEV 263

Query: 289 QCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD----HGS 343
            C  GR G ++  E +G  PDI+T AK +  G  P+GA + ++++      G     HG 
Sbjct: 264 ICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGY 323

Query: 344 TFAGSPLVCNAAIAVLD-----------KISNPAFLA--SKLARNPHVKDVRGLGLIIGI 390
           TF G P+    A+A LD           + + PAF A   KL   P V DVRG G   GI
Sbjct: 324 TFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGI 383

Query: 391 E----------FD------VSATPVVDACRDSGLLVLTAGKGN-VVRLVPPLIISEQELD 433
           E          F       +    +  A  ++GL      +G+ VV+L PPLI  ++E D
Sbjct: 384 ELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFD 443

Query: 434 QAVEIL 439
           +  +IL
Sbjct: 444 EIEQIL 449

Length = 460

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score =  236 bits (603), Expect = 6e-73
 Identities = 125/443 (28%), Positives = 212/443 (47%), Gaps = 64/443 (14%)

Query: 60  RNNKEVMEAEKKLLV--GTYNRAPVVLASGKGCKLYDAEGREYLDL-SSGIAVNALGHGD 116
               ++++ ++      G     P+V+  G G  L D +G+ Y+DL +S  + N +GH  
Sbjct: 2   SKAHQLIQEDEHYFAKSGRIKYYPLVIDHGYGATLTDVDGKTYIDLLASASSQN-VGHAP 60

Query: 117 ADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVACS---FADRVFFSNTGTEANEAAI 172
              ++A+  QA+   H +  Y Y  P + LAK+L   +   F  RV F  +G++AN+  I
Sbjct: 61  PRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGII 120

Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGV---- 227
           KFAR +               +SFTN++HG T G+L+++    + R  + P++PG     
Sbjct: 121 KFARAYTGRPY---------IISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIP 171

Query: 228 --------------NFVE-YGN--IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270
                         NFVE Y     E   K +   + A + +E IQG+GG+      + +
Sbjct: 172 FPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFE 231

Query: 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTE 330
            L   C + G L   D++Q GLGRTG   +  H+ I PD+M+  K LAGG+P+ A +  +
Sbjct: 232 ALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRK 291

Query: 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP--------------AFLASKLARNP 376
           ++  ++    H  T   +P+ C AA+A +D I +                     +++  
Sbjct: 292 EIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYN 351

Query: 377 HVKDVRGLGLIIGIEF----------DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLI 426
            V DVRG GL IGI+           + +A  + + C + G +V+ A  GNV+R  PPL+
Sbjct: 352 FVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHG-VVIIAVAGNVLRFQPPLV 410

Query: 427 ISEQELDQAVEILCKTLPVLDSN 449
           I+ ++LD A+  + +    L++ 
Sbjct: 411 ITYEQLDTALNTIEQAFTALEAG 433

Length = 445

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score =  233 bits (596), Expect = 3e-72
 Identities = 136/396 (34%), Positives = 194/396 (48%), Gaps = 56/396 (14%)

Query: 89  GCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ---IEL 145
             +++D EGR Y+D ++GIAV   GH     I AV  Q +  TH  +    +P    + L
Sbjct: 31  NAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQV--VPYENYVRL 88

Query: 146 AKRL---VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHG 202
           A+RL   V   FA +  F  TG EA E A+K AR     S           ++F   FHG
Sbjct: 89  AERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSA---------VIAFGGGFHG 139

Query: 203 RTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN----------IEATRKL----IQPGKT 247
           RT   ++LT K   Y+  F  +MP V  V +            + A  KL    + P + 
Sbjct: 140 RTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRV 199

Query: 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF 307
           AA+ +EP+QGEGG Y A   F++ LR+ CD  G LL+ DEVQ G  RTG L+A EH+ + 
Sbjct: 200 AAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVA 259

Query: 308 PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367
            D+ T+AK LAGG P+ A     ++  A   G  G T+ G+PL   AA AVLD I     
Sbjct: 260 ADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDL 319

Query: 368 --------------LASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC---------R 404
                         LAS     P + D+RG G +  +EF+ + + +  A           
Sbjct: 320 CERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKAL 379

Query: 405 DSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEIL 439
           + GL++LT G  GNV+R + P+ I +    +A++IL
Sbjct: 380 EKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDIL 415

Length = 425

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score =  232 bits (594), Expect = 3e-72
 Identities = 137/402 (34%), Positives = 206/402 (51%), Gaps = 25/402 (6%)

Query: 62  NKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADWI 120
           +++++  E++L    Y    VVL  G+G  ++D +G  YLD LS+  AVN  GH     +
Sbjct: 5   SEDLIATEQRLGAHNYKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQ-GHCHPKIL 63

Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK--F 178
            A+V+QA  LT  S  + +     L + L A + + +V   N+G EA E AIK  RK  +
Sbjct: 64  AAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGY 123

Query: 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT 238
           +    P+ +    E +   ++FHGRT+  +  ++    R  F P  PG   V +G+ EA 
Sbjct: 124 EVKGVPEGQ---AEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEAL 180

Query: 239 RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
              I P  T A  VEPIQGE G+      +   +R+ C      L+ DE+Q GLGRTG L
Sbjct: 181 EAAITP-NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKL 239

Query: 299 WAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVC---NA 354
            A EH GI  D+  + K L+GG  P+ A L   +V   +  G HGSTF G+PL C    A
Sbjct: 240 LAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARA 299

Query: 355 AIAVL---DKISNPAFLASKLA------RNPHVKDVRGLGLIIGIEFDVSATPVVDAC-- 403
           A+ VL     I N A + +         R+  V++VRG GL++ +E +  A      C  
Sbjct: 300 ALKVLTEEGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEAGGARQYCEA 359

Query: 404 -RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 444
            ++ GLL       + +RL PPL+I+ +++D A+E + K L 
Sbjct: 360 LKERGLLAKDT-HDHTIRLAPPLVITREQVDWALEQIAKVLA 400

Length = 401

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score =  232 bits (593), Expect = 2e-71
 Identities = 142/430 (33%), Positives = 202/430 (46%), Gaps = 82/430 (19%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNMYY 138
             V  +G+G  L DA G+ YLD S G AV+ LGH     I A+  Q + L   H S  + 
Sbjct: 13  LPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS-FFT 71

Query: 139 SIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKF-------QRHSNPDSKEP 189
           + P   LA RLVA + A  + V+F + G+EA EAA+K AR++       QR         
Sbjct: 72  TEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRR-------- 123

Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------EYG 233
              F++   S+HG T+GALA+      R PF P++   + V                 YG
Sbjct: 124 --HFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYG 181

Query: 234 -----NIEATRKLIQPGKTAAVFVEPIQGE-GGIYSATKEFLQFLRDACDDAGALLVFDE 287
                 +EA    + P   AA   E + G   G       + + +R+ CD  G LL+ DE
Sbjct: 182 QRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDE 241

Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG----DHG 342
           V CG+GRTG L+A E  G+ PD++T+AK L  G  PIGA L ++++  AI  G     HG
Sbjct: 242 VMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHG 301

Query: 343 STFAGSPLVCNAAIAVLDKISNP--------------AFLASKLARNPHVKDVRGLGLII 388
            T+ G    C AA+AV   I+                A L  +L ++PHV D+RG GL +
Sbjct: 302 HTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFV 361

Query: 389 GIEF---DVSATPVVDACR----------DSGLLVLTAG------KGNVVRLVPPLIISE 429
           G+E      +  P   A +            GL+V   G      +G+ V L PP II+ 
Sbjct: 362 GVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITA 421

Query: 430 QELDQAVEIL 439
            ++D+ VE L
Sbjct: 422 AQIDEIVERL 431

Length = 443

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score =  231 bits (591), Expect = 2e-71
 Identities = 141/403 (34%), Positives = 201/403 (49%), Gaps = 53/403 (13%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           P+     + C+++D EGREYLD + GIAV   GH     + AV  Q   L+H      + 
Sbjct: 24  PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY 83

Query: 141 -PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
            P +EL +++   V   FA +     TG+EA E A+K AR   + S           ++F
Sbjct: 84  EPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSG---------VIAF 134

Query: 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF-VEY-------------GNIEATRKL- 241
           T ++HGRT   LALT K +  S    +MPG  +   Y              +IE   K  
Sbjct: 135 TGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKND 194

Query: 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301
             P   AA+ +EP+QGEGG Y+A+  F+Q LR  CD+ G +L+ DEVQ G GRTG L+A 
Sbjct: 195 AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAM 254

Query: 302 EHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
           E  G+  D+ T AK +AGG P+       +V  AI  G  G T+AG+P+ C AA+AVL  
Sbjct: 255 EQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKV 314

Query: 362 ISNPAFL------ASKL--------ARNPHVKDVRGLGLIIGIEF---DVSATPVVDAC- 403
                 L        KL         ++P + DVRGLG +I IE       + P      
Sbjct: 315 FEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTA 374

Query: 404 ------RDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEIL 439
                 RD GL++L+ G   NV+R++ PL I + ++ Q +EI+
Sbjct: 375 QIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417

Length = 425

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score =  226 bits (579), Expect = 2e-69
 Identities = 129/423 (30%), Positives = 207/423 (48%), Gaps = 63/423 (14%)

Query: 80  APVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
           A +V+A  +G  + D +G  YLD  SG+  VN +G+G  +  +A  +Q   L++      
Sbjct: 29  ATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVN-VGYGRKELAEAAYEQLKTLSYFPLTQS 87

Query: 139 SIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
             P I+LA++L      +  +FFSN+G+EANE A K AR++        +    +F+S  
Sbjct: 88  HEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHR---YKFISRY 144

Query: 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV--------------EYGNIEATRKLIQ 243
            ++HG +MGALA T +   +  +EP+ PG   V              +  ++E  +++ +
Sbjct: 145 RAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDR 204

Query: 244 ------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
                     AAV +EPI   GG+    +++++ +++ C   GALL+ DEV CG GRTG 
Sbjct: 205 VMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264

Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGSPL 350
            +   +YG+ PDI+T+AK +    LP+ A  V +++  A           H +TF G+P 
Sbjct: 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPA 324

Query: 351 VCNAAIAVLDKISNPAF--------------LASKLARNPHVKDVRGLGLIIGIEF---- 392
            C  A+  L+ + N                 L  +L  +P V D+RG GL++GIE     
Sbjct: 325 ACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDK 384

Query: 393 ------DVS-ATPVVDACRDSGLLV-----LTAGKGNVVRLVPPLIISEQELDQAVEILC 440
                 D      VV AC++ GL++       AG  NV+ L PPL+IS +E+   V  L 
Sbjct: 385 ETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLK 444

Query: 441 KTL 443
             L
Sbjct: 445 TAL 447

Length = 451

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score =  224 bits (572), Expect = 2e-68
 Identities = 131/434 (30%), Positives = 203/434 (46%), Gaps = 80/434 (18%)

Query: 78  NRAPVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVLTHVSNM 136
            R P+++  G G  +YD +G++ LD   G+  VN +GH   +  +A+V Q + L      
Sbjct: 22  ARPPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVN-VGHNREEVKEAIVRQLDELE----- 75

Query: 137 YYSI-------PQIELAKRLVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDS 186
           YYS          IEL+  L+     +   RVFFS+ G+++ E A+K AR++ +      
Sbjct: 76  YYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRG--- 132

Query: 187 KEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE----YGN------- 234
            +P  T+F+S    +HG   G  ++     +R  +EP++PG   VE    Y N       
Sbjct: 133 -QPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDP 191

Query: 235 -------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLV 284
                       + I    P   AA   EP+QG GG+      F   +R+ CD  G LL+
Sbjct: 192 EELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLI 251

Query: 285 FDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--- 340
            DEV  G GRTG  +    +G+ PDIM LAK +  G +P+GA +V  ++A A        
Sbjct: 252 ADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFG 311

Query: 341 ----HGSTFAGSPLVCNAAIAVLDKI------SNPAFLASKL--------ARNPHVKDVR 382
               HG T++G P+ C AA+A LD +      +N A   + L         R   V DVR
Sbjct: 312 GAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVR 371

Query: 383 GLGLIIGIEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISE 429
           G GL++ ++      +  P          V D  R++G+LV  +  G  + L PPL+I  
Sbjct: 372 GKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS--GTKIILSPPLVIQR 429

Query: 430 QELDQAVEILCKTL 443
           +++D+ V+ L   L
Sbjct: 430 EDVDRIVDALDAGL 443

Length = 449

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score =  218 bits (558), Expect = 1e-66
 Identities = 132/409 (32%), Positives = 193/409 (47%), Gaps = 55/409 (13%)

Query: 74  VGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD--QANVL 130
           V +Y R+ P V    KG  L+D +G+EY+D  +G      GH +    +A++D    + +
Sbjct: 10  VRSYCRSFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGI 69

Query: 131 THVSNMYYSIPQIELAKRLVACSFADR------VFFSNTGTEANEAAIKFARKFQRHSNP 184
            H  +M  +  + E  +         R       F   TGT A E+A+K ARK    SN 
Sbjct: 70  IHSLDMA-TEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSN- 127

Query: 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN--------IE 236
                    VSFTN+FHG T+G+L++T     R      +  V+ + Y          I 
Sbjct: 128 --------VVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIA 179

Query: 237 ATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
              KL++         AAV +E +QGEGGI  A+ E+LQ L   C     LL+ D++Q G
Sbjct: 180 YFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAG 239

Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAI-NYGDHGSTFAGSP 349
            GRTG  ++ E  GI PDI+ L+K ++G GLP+  AL   K    +   G+H  TF G+ 
Sbjct: 240 CGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPL--ALTLIKPELDVWKPGEHNGTFRGNN 297

Query: 350 LVCNAAIAVL------DKISN---------PAFLASKLARNPH-VKDVRGLGLIIGIEFD 393
           L    A A L      D                L   +A  P  +K VRG GL+ GIE  
Sbjct: 298 LAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECG 357

Query: 394 VS--ATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEIL 439
               A  +  A  ++GL++ T+G    V++L+PPL I E+ L Q ++IL
Sbjct: 358 DGDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDIL 406

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score =  218 bits (557), Expect = 2e-66
 Identities = 141/397 (35%), Positives = 201/397 (50%), Gaps = 56/397 (14%)

Query: 92  LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ---IELAKR 148
           L+D EGREY+D ++GIAV   GH     + AV  Q +  TH +  Y  +P    + LA+R
Sbjct: 34  LWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTA--YQIVPYASYVTLAER 91

Query: 149 LVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTM 205
           + A +  D   +  F  TG EA E A+K AR +       +  P    ++F  +FHGRT+
Sbjct: 92  INALAPIDGPAKTAFFTTGAEAVENAVKIARAY-------TGRPG--VIAFGGAFHGRTL 142

Query: 206 GALALTSK-EHYRSPFEPVMPGVNFVEYGNI-------EATRKL-------IQPGKTAAV 250
             +ALT K   Y+  F P    +    Y N        EA   +       I P + AA+
Sbjct: 143 LTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAI 202

Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
            +EPIQGEGG   A  EF+  LR  CD+ G LL+ DEVQ G  RTG L+A E+Y + PD+
Sbjct: 203 LLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL 262

Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN------ 364
           +T+AK L GG+PI A +   +V  A   G  G T+AG+PL   AA+AVLD I+       
Sbjct: 263 ITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQR 322

Query: 365 PAFLASKL--------ARNPHVKDVRGLGLIIGIEFDVSAT---------PVVDACRDSG 407
              L + L        A  P + D+R  G ++ +EF+   T                + G
Sbjct: 323 ALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEG 382

Query: 408 LLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTL 443
           LL+L+ G  GNV+R + PL I + +  +A+ IL + L
Sbjct: 383 LLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLL 419

Length = 421

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score =  216 bits (553), Expect = 1e-65
 Identities = 137/429 (31%), Positives = 211/429 (49%), Gaps = 62/429 (14%)

Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-- 132
           G  N  P    S  G  + D +G +Y+D +  I    +GH      +A+  Q +   H  
Sbjct: 31  GVSNGIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTG 90

Query: 133 VSNMYYSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
            + M Y  P IELA++L A    SF  +V F N+G EA E A+K ARK+       +K  
Sbjct: 91  FNVMMYE-PYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKY-------TKRQ 142

Query: 190 ATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN-------------- 234
               +SF+  FHGRT+  + +TSK + Y+  F P  P V    +                
Sbjct: 143 GI--ISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYD 200

Query: 235 ---IEATRKL----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
              IE  +      + P   AAV +EP+QGEGG    +K+F+Q +R+ C + G L V DE
Sbjct: 201 DFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADE 260

Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
           +Q G  RTG  +A EH+ + PD++T++K L  G+PI   +  +++      G+ G T+AG
Sbjct: 261 IQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAG 320

Query: 348 SPLVCNAAIAVLDKISNPAF--LASKLAR------------NPHVKDVRGLGLIIGIEF- 392
           SPL C AA+AVLD I        A +L +               + DVRGLG +   E  
Sbjct: 321 SPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELV 380

Query: 393 --------DVSATP-VVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKT 442
                   D + T  +       GLL+L+AG  GNV+R++ PL+I++++L++ + I+ ++
Sbjct: 381 QDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEES 440

Query: 443 LPVLDSNSN 451
           L      +N
Sbjct: 441 LQACYEKAN 449

Length = 451

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score =  214 bits (548), Expect = 6e-65
 Identities = 133/411 (32%), Positives = 194/411 (47%), Gaps = 57/411 (13%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM---Y 137
           PV +A   G  + D +G   +DL SGIAV ++G+     ++AV +Q    TH   M   Y
Sbjct: 39  PVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPY 98

Query: 138 YSIPQI-ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
                + E   RL       R    N+G EA E A+K AR +       +   A   V F
Sbjct: 99  EGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSY-------TGRQAV--VVF 149

Query: 197 TNSFHGRTMGALALTSK-------------EHYRSPF-----EPVMPGVNFVEYGN--IE 236
            +++HGRT   +ALT+K             E YR+P      +P     +  E     I 
Sbjct: 150 DHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAIT 209

Query: 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
              K +     AAV +EPIQGEGG     + FL  L + C + G + + DEVQ G  RTG
Sbjct: 210 VIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG 269

Query: 297 YLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
             +A EH GI PD++T AK +AGGLP+ A     ++  A + G  G T+ G+P+ C AA+
Sbjct: 270 AWFACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAAL 329

Query: 357 AVLDKISNPAF--------------LASKLARNPHVKDVRGLGLIIGIEFDVSAT----- 397
           A ++ I                   L +  A +  + DVRG G +I IE     T     
Sbjct: 330 AAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDA 389

Query: 398 ----PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 443
                +  A   +G++VLT G  GNV+RL+PPL+I ++ L + +++L   L
Sbjct: 390 ELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAAL 440

Length = 443

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score =  214 bits (547), Expect = 8e-65
 Identities = 135/375 (36%), Positives = 209/375 (55%), Gaps = 36/375 (9%)

Query: 92  LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQ-ANVLTHVSNMYYSIPQIELAKRLV 150
           L D +G E++D   G  +  +GH + + I AV +Q A    H   +   +  + LAK L 
Sbjct: 69  LIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRAL-LAKTLA 127

Query: 151 ACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
           A +       FF N+GTE+ EAA+K A+ +Q   +P  K     F++ + +FHG+++GAL
Sbjct: 128 ALTPGKLKYSFFCNSGTESVEAALKLAKAYQ---SPRGK---FTFIAASGAFHGKSLGAL 181

Query: 209 ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK-----TAAVFVEPIQGEGGIYS 263
           + T+K  +R PF P++PG + V +G+IEA  K +   K      AA+ +EPIQGEGG+  
Sbjct: 182 SATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVIL 241

Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LP 322
             + +L  +R  CD+ GALL+ DEVQ G+GRTG ++A EH G+ PDI+ LAK L GG +P
Sbjct: 242 PPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMP 301

Query: 323 IGAALVTEKVASAI--NYGDHGSTFAGSPLVCNAAIAVLDKISN---PAFLASK------ 371
           IGA + TE V S +  N   H +TF G+PL C AA+A ++++     PA  A K      
Sbjct: 302 IGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLD 361

Query: 372 ----LARN-PH-VKDVRGLGLIIGIEF---DVSATPVVDACRDSGLLVLTAGKGNVVRLV 422
               LA   P  + + RG GL++ IEF   ++      +  + + L+  T      +R+ 
Sbjct: 362 GFQQLAAEYPDLIIEARGKGLLMAIEFRDNEIGYAFAKELFQQNILVAGTLNNAKSIRIE 421

Query: 423 PPLIISEQELDQAVE 437
           PPL I+ ++    ++
Sbjct: 422 PPLTITIEQCALVIK 436

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  213 bits (543), Expect = 6e-64
 Identities = 135/422 (31%), Positives = 210/422 (49%), Gaps = 66/422 (15%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY--Y 138
           P+++  G+G KLYD  G EY D  S I +N  GH   +  +A+ +Q N + H S +    
Sbjct: 39  PLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAH-STLLGLA 97

Query: 139 SIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
           ++P I LA++L  V      +VF+S++G  A E AIK A ++ ++     K     FV+ 
Sbjct: 98  NVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKK---QRFVTL 154

Query: 197 TNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGN---------IEATR 239
            N++HG T+GA+++ + + +   +  ++        P      YGN         +E   
Sbjct: 155 KNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELE 214

Query: 240 KLIQPG--KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
           +L++    + AA+ VEP +QG GG+ +  K +L+ LR+ C     L + DEV  G GRTG
Sbjct: 215 ELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG 274

Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTFAG 347
            ++A EH  + PDIMT  K L GG LPI   + T+++ +A  YGD        HG ++ G
Sbjct: 275 KMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAF-YGDYEEQKTFFHGHSYTG 333

Query: 348 SPLVCNAAIAVLD-------------KISNPAFLASKLARNPHVKDVRGLGLIIGIE--- 391
           +PL C  A+A L+             K    A     L    HV D+R LGL++GIE   
Sbjct: 334 NPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVK 393

Query: 392 -------FDVSATPVVDAC---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 441
                  F+ +    V  C   R+ G+  LT   GN +  +PPL  +  ELD+ + IL K
Sbjct: 394 NKETKEPFEWTERVGVQVCKRSRELGM--LTRPLGNTIVFMPPLASTIDELDEMLRILYK 451

Query: 442 TL 443
            +
Sbjct: 452 AI 453

Length = 460

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score =  204 bits (521), Expect = 6e-61
 Identities = 138/437 (31%), Positives = 204/437 (46%), Gaps = 71/437 (16%)

Query: 70  KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV 129
           K LL   Y   PV+ + GKG  LYD  G +Y D SSG     +GHG  +   A+ +QA  
Sbjct: 7   KPLLGQPY---PVI-SHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEE 62

Query: 130 LTHV-SNMYYSIPQIELAKRLVACSFADR--VFFSNTGTEANEAAIKFA-RKFQRHSNPD 185
           ++ V  + + S P  +LAK+L   S  D    FF N+G+EANE A+K A + FQ      
Sbjct: 63  VSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQG 122

Query: 186 SKEPATEFVSFTNSFHGRTMGALALT-------------------SKEH-YRSPFEPVMP 225
                 + +S   S+HG TMGAL+++                   S  + YR P + V P
Sbjct: 123 K----HKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYP 178

Query: 226 GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLV 284
                    +E   + I     AA   EPI G  G      K + + +++ CD    L +
Sbjct: 179 TCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFI 238

Query: 285 FDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALVTEKVASAINYGDH-- 341
            DEV  GLGRTG ++A EH+G+ PDIMTL K L AG  PI A +V+++V   I  G    
Sbjct: 239 ADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSI 298

Query: 342 --GSTFAGSPLVCNAAIAVLDKI----------SNPAFLASKL----ARNPHVKDVRGLG 385
             G T + +PL    A+AVL+ +              +L   L     ++  + DVRG G
Sbjct: 299 MSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKG 358

Query: 386 LIIGIEF---DVSATP----------VVDACRDSGLLV------LTAGKGNVVRLVPPLI 426
           L+IG+EF     +  P          ++     +GLL+          +G+ V + PP+ 
Sbjct: 359 LLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMT 418

Query: 427 ISEQELDQAVEILCKTL 443
           I+  ELD+ + I  K++
Sbjct: 419 ITYSELDELLSIFAKSV 435

Length = 447

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score =  200 bits (511), Expect = 1e-59
 Identities = 125/441 (28%), Positives = 198/441 (44%), Gaps = 76/441 (17%)

Query: 64  EVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
             ME+     V +Y R  P   A  +GC + D EG+EYLD  +G    ALGH   +  + 
Sbjct: 8   NEMESN----VRSYPRKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQK 63

Query: 123 VVD--QANVLTHVSNMYYSIPQIELAKRLVACSFADR-----VFFSNTGTEANEAAIKFA 175
           ++D  Q+ +  H  ++   +      + L+      +      F   +G +A EAAIK A
Sbjct: 64  ILDYLQSGLPLHTLDLTTPLKD-AFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLA 122

Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--- 232
           + +   +N          +SF+  FHG T+GALA+T     ++    +MPGV F+ Y   
Sbjct: 123 KTYTGRTN---------VISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHE 173

Query: 233 --------------GNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLR 273
                          +IE     I+       K AAV +E IQGEGG+ +A  E+LQ +R
Sbjct: 174 YRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIR 233

Query: 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVA 333
           +        L+ DEVQ G GR+G ++A EH GI PD + ++K + GGLP+   L+  +  
Sbjct: 234 EVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPEF- 292

Query: 334 SAINYGDHGSTFAGSPLVCNAAIAVLDKISN--------------PAFLASKLARNPHVK 379
            A     H  TF G+ L        L+   +               +FL   +  +P + 
Sbjct: 293 DAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIG 352

Query: 380 DVRGLGLIIGIEFDVS----------------ATPVVDACRDSGLLVLTAGK-GNVVRLV 422
           +VRG GL+ GI                     A  +  AC ++GLL+ T G+ G V RL+
Sbjct: 353 NVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLL 412

Query: 423 PPLIISEQELDQAVEILCKTL 443
            P+ I ++E ++ +    + +
Sbjct: 413 CPITIDQEECEEGISRFKQAV 433

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score =  199 bits (508), Expect = 5e-59
 Identities = 127/428 (29%), Positives = 203/428 (47%), Gaps = 75/428 (17%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNA-LGHGDADWIKAVVDQANVLTHVSNMYYS 139
           P+V+A  +G  ++D EGR YLD SS + VN  +GH     + A+ +QA  L  V+  + +
Sbjct: 36  PMVIAGAEGSYVWDYEGRRYLDFSSQL-VNTNIGHQHPKVVAAIQEQAARLCTVAPAHAN 94

Query: 140 IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
             + E A+ +   +  D  +VFF+N G +ANE A++ AR               + +S  
Sbjct: 95  DARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRP---------KVLSAY 145

Query: 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVN------------FVEYGNIEATRKL---- 241
            S+HG T  A+ LT  +  R P +    GV                    E  R L    
Sbjct: 146 RSYHGGTGSAINLTG-DPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLE 204

Query: 242 --IQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
             I+   P   AA+ +E + G  GI      +L  +R+ CD  G +L+ DEV  G GRTG
Sbjct: 205 RVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG 264

Query: 297 YLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALVTEKVASAINYGDH----GSTFAGSPLV 351
             +A EH+G+ PD++T AK + +G +P+G   ++E +A+   + D     G T++G PL 
Sbjct: 265 KWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAAT--FADRPYPGGLTYSGHPLA 322

Query: 352 CNAAIAVLDK------ISNPAFLASKL---------ARNPHVKDVRGLGLIIGIEF---- 392
           C AA+A ++       + N A + +++          R+P V +VRGLG+   +E     
Sbjct: 323 CAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADR 382

Query: 393 ---------DVSATP---VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
                      S+     V  AC++ GLL      GN + +VPP  ++E E+ + + IL 
Sbjct: 383 ETREPLAPYGASSAAMAAVKAACKERGLLPFVN--GNRIHVVPPCTVTEDEVREGLAILD 440

Query: 441 KTLPVLDS 448
             L V D+
Sbjct: 441 AALAVADA 448

Length = 451

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score =  198 bits (507), Expect = 9e-59
 Identities = 133/424 (31%), Positives = 200/424 (47%), Gaps = 61/424 (14%)

Query: 76  TYNR----APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT 131
           T NR    AP +L S +G    DA+GR+ LD ++G+     GHG  + ++AV  QA  L 
Sbjct: 23  TANRQFKAAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLD 82

Query: 132 HVSNMYYSIPQ-IELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
           +        P   ELA+RL   +    D VFF+N+G+E+ + A+K A  + R     ++ 
Sbjct: 83  YAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTR- 141

Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------EY 232
             T  +     +HG   G +++    + R  F  ++PGV+ +                E+
Sbjct: 142 --TRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEH 199

Query: 233 GNIEATR--KLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
           G   A    +L+        AAV VEP+ G  G+    K +LQ LR+ CD  G LL+FDE
Sbjct: 200 GAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDE 259

Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------ 340
           V  G GR G  +A E +G+ PDI+T AK L  G +P+GA + ++++  A   G       
Sbjct: 260 VITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEF 319

Query: 341 -HGSTFAGSPLVCNAAIAVLDKISN-----------PAFLAS--KLARNPHVKDVRGLGL 386
            HG T++  P+ C A +A LD               P F  +   L   PHV D+R +GL
Sbjct: 320 FHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGL 379

Query: 387 IIGIEFD-------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
           + GIE                  C + GLLV     G+ + L PPLII + ++D+ V+ L
Sbjct: 380 VAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT--GDTIALSPPLIIEKAQIDELVDAL 437

Query: 440 CKTL 443
              L
Sbjct: 438 GDAL 441

Length = 445

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  197 bits (503), Expect = 5e-58
 Identities = 135/410 (32%), Positives = 201/410 (49%), Gaps = 62/410 (15%)

Query: 86  SGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIE 144
            G+G  L D EG+ YLD  S   VN  GH +    + + DQ + L HV    +S  P IE
Sbjct: 35  RGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIE 94

Query: 145 LAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHG 202
           L++RLV  +     R F+++ G+ A E A+K +  + R+     K     FV+ TNS+HG
Sbjct: 95  LSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRK---KRFVTLTNSYHG 151

Query: 203 RTMGALALTSKEHYRSPFEPVM---------------PGVNFVEYGN--IEATRKLIQPG 245
            T+ A+++     +   ++P++                G+++ E+         + +   
Sbjct: 152 ETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEH 211

Query: 246 --KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
             + AAV VEP IQG GG+      +L+ LR+ACD  G  L+ DE+  G GRTG ++A E
Sbjct: 212 HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACE 271

Query: 303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTFAGSPLVCN 353
             GI PD + L+K L GG LP+ A L T+ V  A  Y D        H  ++ G+PL C 
Sbjct: 272 QAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAF-YDDYPTLRAFLHSHSYTGNPLACA 330

Query: 354 AAIAVLD------KISNPAFLASKLAR-------NPHVKDVRGLGLIIGIEF---DVSAT 397
           AA+A LD       I N   LA ++A        +PHV +VR  G+I+ IE      S T
Sbjct: 331 AALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKT 390

Query: 398 PVVDACRDSGLLV----LTAGK-----GNVVRLVPPLIISEQELDQAVEI 438
           P     R  GL V    L  G      G+VV  +PP +I+ +++D   E+
Sbjct: 391 PYPWQER-RGLKVYQHALERGALLRPLGSVVYFLPPYVITPEQIDFLAEV 439

Length = 466

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score =  196 bits (501), Expect = 9e-58
 Identities = 120/407 (29%), Positives = 197/407 (48%), Gaps = 60/407 (14%)

Query: 83  VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142
           VLAS +G  + D +G++Y+D   G  V+ LG+G    I+ V +Q   L      + +   
Sbjct: 57  VLASAEGIYIEDVDGKKYMDFH-GNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETA 115

Query: 143 IELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF 200
           IE A++L   +  +  RV F+  GT A   A+K AR    +          + VS  +SF
Sbjct: 116 IECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNF---------KVVSLWDSF 166

Query: 201 HGRTMGALALTSKEHYRSPFEPVMPGVNFVE--------YGNIEATR---------KLIQ 243
           HG ++ A+++  +  +R    P+M GV  +         + + + +           + +
Sbjct: 167 HGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK 226

Query: 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303
            G   A   E ++    +   +K + + +R+ CD    LL+ DE+  G+GRTG  + H+ 
Sbjct: 227 EGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQA 285

Query: 304 YGIFPDIMTLAKPLAGGL-PIGAALVTEK--VASAINYGDHGSTFAGSPLVCNAAIAVLD 360
           YGI PDI+ + K L GGL PI A +  +K   A+ I+ G +  T   SPL C AA+A ++
Sbjct: 286 YGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHY--THEKSPLGCAAALATIE 343

Query: 361 KISN----------PAFLASKL----ARNPHVKDVRGLGLIIGIEFDVS----------A 396
            I              F+  +L    A+ P + DVRG+GL+ G+E              A
Sbjct: 344 VIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEA 403

Query: 397 TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
             V+  C ++G L     +GNV++L PPLII+ +EL QA+ IL + +
Sbjct: 404 EAVLYRCLNNG-LSFKVSQGNVIQLSPPLIITREELTQALAILEEAI 449

Length = 459

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score =  192 bits (490), Expect = 1e-56
 Identities = 139/401 (34%), Positives = 196/401 (48%), Gaps = 58/401 (14%)

Query: 85  ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ-- 142
            S +   L D EG EY+D ++GIAV   GH   D + AV  Q    TH +  Y  +P   
Sbjct: 27  QSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTA--YQIVPYES 84

Query: 143 -IELAKRLVAC----SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
            + LA+++ A       A   FF+ TG EA E A+K AR         +  P    ++F+
Sbjct: 85  YVTLAEKINALAPVSGQAKTAFFT-TGAEAVENAVKIARA-------HTGRPGV--IAFS 134

Query: 198 NSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN----------IEATRKL----I 242
             FHGRT   +ALT K   Y+  F P    V  V Y +          ++A  +L    I
Sbjct: 135 GGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDI 194

Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
           +  + AA+  EP+QGEGG   A KE +  +R  CD+ G +++ DEVQ G  RTG L+A +
Sbjct: 195 EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMD 254

Query: 303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362
           HY   PD+MT+AK LAGG+P+   +    +  A   G  G T+AG+PL   AA AVL+ I
Sbjct: 255 HYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNII 314

Query: 363 SNPAF------LASKLARN--------PHVKDVRGLGLIIGIEFD---------VSATPV 399
              +       L  +L           P +  VRGLG +I  EF+           A  +
Sbjct: 315 DKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKI 374

Query: 400 VDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEIL 439
                  GLL+LT G  GNV+R + PL I + + D A++IL
Sbjct: 375 QQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKIL 415

Length = 421

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score =  191 bits (487), Expect = 6e-56
 Identities = 136/429 (31%), Positives = 204/429 (47%), Gaps = 63/429 (14%)

Query: 76  TYNR----APVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVL 130
           T NR    AP +L + KG      +GR  LD ++G+  VNA GHG  + ++AV  QA  L
Sbjct: 20  TANRQFKKAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNA-GHGRPEIVEAVRAQAGEL 78

Query: 131 THVSNMYYSIPQ-IELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187
            +        P+  ELA R+   +      VFF+N+G+E+ + A+K A  + R     S+
Sbjct: 79  DYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSR 138

Query: 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------E 231
              T  +     +HG   G +++      R  F  ++PGV+ +                E
Sbjct: 139 ---TRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPE 195

Query: 232 YG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286
           +G      +E    L      AAV VEP+ G  G+    K +LQ LR+ CD  G LL+FD
Sbjct: 196 HGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFD 255

Query: 287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD----- 340
           EV  G GR G  +A +++G+ PD++T AK L  G +P+GA  V+ ++  A   G      
Sbjct: 256 EVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIE 315

Query: 341 --HGSTFAGSPLVCNAAIAVLDK------ISNPAFLAS-------KLARNPHVKDVRGLG 385
             HG T++G PL C AA+A LD       ++  A LA         L   PHV D+R LG
Sbjct: 316 FFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLG 375

Query: 386 LIIGIEFD-------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEI 438
           L+  +E           A  V   C + GL++     G+++ L PPLII E ++D+  +I
Sbjct: 376 LVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT--GDILALSPPLIIEEAQIDELFDI 433

Query: 439 LCKTLPVLD 447
           L + L    
Sbjct: 434 LAQALKETI 442

Length = 442

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  186 bits (474), Expect = 5e-54
 Identities = 137/429 (31%), Positives = 209/429 (48%), Gaps = 80/429 (18%)

Query: 74  VGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT- 131
           V +Y R  P+ +A  +G  + D EG +YLD  +G    ALGH   D ++++ D   VLT 
Sbjct: 33  VRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQD---VLTS 89

Query: 132 ----HVSNMYYSIPQIELAKRLVACSFADR-----VFFSNTGTEANEAAIKFARKFQRHS 182
               H  ++   +     ++ L++            F   +G +A EAAIK A+ +   S
Sbjct: 90  GLPLHTLDLTTPLKD-AFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRS 148

Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---------- 232
           N          +SF+  +HG T GALA+T     ++    +MPGV F+ Y          
Sbjct: 149 N---------VISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGI 199

Query: 233 GNIEATRKL----------IQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
           G     + L          ++ G  K AAV +E IQGEGG+  A  E+LQ +R+     G
Sbjct: 200 GGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHG 259

Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
            LL+ DEVQ G  RTG ++A EH GI PDI+ ++K + GGLP+ A L  +K   A   G 
Sbjct: 260 ILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGLPL-AVLGIKKEFDAWQPGG 318

Query: 341 HGSTFAGSPLVCNAAIAVLDKISNP----------AFLASKLA----RNPHVKDVRGLGL 386
           H  TF G+ L     +  L  +              +L ++LA    R P + +VRG GL
Sbjct: 319 HTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGL 378

Query: 387 IIGIEF-----------------DVSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIIS 428
           +IGIE                  +++A  +  AC ++GLL+   G+ GNVVRL+PPL+I+
Sbjct: 379 MIGIEIVDERQPADAMGSYPADGELAAA-IQKACFENGLLLERGGRNGNVVRLLPPLLIT 437

Query: 429 EQELDQAVE 437
           + E ++ ++
Sbjct: 438 QAECEEFID 446

Length = 459

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score =  184 bits (469), Expect = 3e-53
 Identities = 125/423 (29%), Positives = 192/423 (45%), Gaps = 73/423 (17%)

Query: 83  VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY---- 138
           V+   +G  L+D+EG + LD  +G+    +G+G  +   A   Q   L      YY    
Sbjct: 35  VITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELP-----YYNTFF 89

Query: 139 ---SIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
                P IELA +L  VA    + VFF+N+G+EAN+  ++  R +        K      
Sbjct: 90  KTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQK---KVI 146

Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV---------------EYGNIEAT 238
           +S  N +HG T+   +L   ++     +  +PG+  +               E+G + A 
Sbjct: 147 ISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFG-LAAA 205

Query: 239 RKL------IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
           R+L      +     AA   EPIQG GG+      +   ++  C     LLV DEV CG 
Sbjct: 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGF 265

Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASA-INYGD---HGSTFAG 347
           GRTG  +  +H+GI PD+MT+AK L  G +P+GA  V ++VA   I  G    HG T++G
Sbjct: 266 GRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSG 325

Query: 348 SPLVCNAAIAVLDKISN------------PAFLA--SKLARNPHVKDVRGLGLIIGIE-- 391
            P+    A+A L  + +            P       +LA +P V +VRG+GL+  IE  
Sbjct: 326 HPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELV 385

Query: 392 --------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
                   F+      T   D C  +GL++   G   +  + PPL+I+  E+D+ VE   
Sbjct: 386 KDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMI--ISPPLVITHAEIDELVEKAR 443

Query: 441 KTL 443
           K L
Sbjct: 444 KAL 446

Length = 456

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score =  177 bits (451), Expect = 2e-50
 Identities = 112/420 (26%), Positives = 179/420 (42%), Gaps = 66/420 (15%)

Query: 80  APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY- 138
             +V+   +G  + DA+GR YLD   G+    +G+G  +   A+ DQA  L + +     
Sbjct: 33  GSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDM 92

Query: 139 -SIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPATEFV 194
            + P  ELA +L   +  D   VF +  G+ A ++A++F   +      P  K      +
Sbjct: 93  TNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKH----II 148

Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN-------------------- 234
           +  +++HG T    +LT K   R+ F+     V+ +   N                    
Sbjct: 149 TRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDE 208

Query: 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
            E     +     AA   EPI G GG+      +   +R+ C     L + DEV  G GR
Sbjct: 209 FEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGR 268

Query: 295 TGYLWA-HEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAI-------NYGDHGSTF 345
            G+ +A    +GI PDI+T AK L  G  P+GA +++E++   I       N   HG T+
Sbjct: 269 LGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTY 328

Query: 346 AGSPLVCNAAIAVLDKISNPAFLA-------------SKLARNPHVKDVRGLGLIIGIEF 392
           +G P+ C AA+  ++ +                    + L   P V DVRG  L+  +E 
Sbjct: 329 SGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVEC 388

Query: 393 ------------DVSATPVVDA-CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
                       D++    +D  C++ GLLV       V  L PPLII+  ++D+ V IL
Sbjct: 389 VADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHLCV--LSPPLIITRAQIDEIVAIL 446

Length = 466

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  176 bits (448), Expect = 5e-50
 Identities = 131/442 (29%), Positives = 198/442 (44%), Gaps = 104/442 (23%)

Query: 79  RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA--NVLT----- 131
           R P+ L   +G  + D EGR+++D  +G    ALGH        VV +A   VL      
Sbjct: 44  RIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHN-----HPVVIEAIQQVLADELPL 98

Query: 132 H------------VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
           H            V +++ S+P+   A+       A   F   TGT+A EAA+K  +   
Sbjct: 99  HTLDLTTPVKDQFVQDLFASLPE-AFARE------AKIQFCGPTGTDAVEAALKLVKT-- 149

Query: 180 RHSNPDSKEPAT---EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---- 232
                     AT     +SF   +HG + GAL+L      + P   ++PGV F+ Y    
Sbjct: 150 ----------ATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDY 199

Query: 233 -------GN---------IEATRKLIQP----GKTAAVFVEPIQGEGGIYSATKEFLQFL 272
                  G          +E    L  P       AAV +E +QGEGG+  A  E+L+ L
Sbjct: 200 RCPFGLGGEAGVRANLHYLE--NLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGL 257

Query: 273 RDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV 332
           R   ++AG  L+ DE+Q G GRTG ++A EH GI PD++ L+K + G LP+ A +V  + 
Sbjct: 258 RRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPL-AVVVYREW 316

Query: 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKI------SNPAFLASKLARN--------PHV 378
                 G H  TF G+ +   A  A L  I       + A +  +L  +        P +
Sbjct: 317 LDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQL 376

Query: 379 KDVRGLGLIIGIEF-------DVSATPVVDA---------CRDSGLLVLTAGK-GNVVRL 421
            DVRG GL++G+E        D    P  +          C   GL++   G+ G+VVR 
Sbjct: 377 GDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRF 436

Query: 422 VPPLIISEQELDQAVEILCKTL 443
           +PPLII+ +++D+  EI  + +
Sbjct: 437 LPPLIITAEQIDEVAEIFAEAV 458

Length = 464

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score =  170 bits (432), Expect = 5e-48
 Identities = 95/345 (27%), Positives = 152/345 (44%), Gaps = 47/345 (13%)

Query: 59  GRNNKEVMEAEKKLLVG----------TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIA 108
              ++ + E  KK++ G          +    P+ +  GKG  L D +G EY+D   G  
Sbjct: 4   FPKSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWG 63

Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVACSF--ADRVFFSNT 163
              LGH     ++AV +Q           +  P   ++ELA+ L+       ++V F N+
Sbjct: 64  PLILGHAHPAVVEAVQEQLERGLS-----FGAPTELEVELAE-LLIERVPSIEKVRFVNS 117

Query: 164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFE 221
           GTEA  +AI+ AR +       +       + F   +HG +   L  A +      SP  
Sbjct: 118 GTEATMSAIRLARAY-------TGRDK--IIKFEGCYHGHSDSLLVKAGSGAATLGSPSS 168

Query: 222 PVMPG-----VNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274
           P +P         + Y ++EA  +  +      AAV VEP+ G  G+      FL+ LR+
Sbjct: 169 PGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRE 228

Query: 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVAS 334
             ++ GALL+FDEV  G  R     A  +YG+ PD+ TL K + GGLPIGA     ++  
Sbjct: 229 LTEEHGALLIFDEVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIME 287

Query: 335 AIN-----YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLAR 374
            +      Y     T +G+PL   A +A L+++     +  +L  
Sbjct: 288 QLAPLGPVY--QAGTLSGNPLAMAAGLATLEELMTEEGVYERLDA 330

Length = 432

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score =  170 bits (433), Expect = 6e-48
 Identities = 120/426 (28%), Positives = 196/426 (46%), Gaps = 72/426 (16%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSNMYY 138
           P+V+  G+G  +YD  G+ Y++  +G+   ALG  +   ++A   Q   L   H  +   
Sbjct: 31  PLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKS 90

Query: 139 SIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHS---NPDSKEPATEF 193
             P I+LA++LVA +     +VFF+N+G+EAN+  +K    +  ++    P+ K+     
Sbjct: 91  HGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLV--WYYNNALGRPEKKK----I 144

Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV---------NFVEYGNIE---ATR-- 239
           +S    +HG T+ + +LT   +    F+  +  +          F   G  E   ATR  
Sbjct: 145 ISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLA 204

Query: 240 ----KLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
                LI    P   AA   EP+ G GG+    K + + ++        LLV DEV CG 
Sbjct: 205 NELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGF 264

Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAI--------NYGDHGS 343
           GRTG ++  E +GI PDI+ ++K L+    P+ A L+ EKV   I         +G HG 
Sbjct: 265 GRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFG-HGF 323

Query: 344 TFAGSPLVCNAAIAV--------LDKISNPAFLASK-------LARNPHVKDVRGLGLII 388
           T +G P+   AA+A+         D + N A   ++       LA +P V +VRG+GLI 
Sbjct: 324 TASGHPVA--AAVALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIA 381

Query: 389 GIEF--DVSATPVVDACRDSGLL---------VLTAGKGNVVRLVPPLIISEQELDQAVE 437
            +E   D +     +     G           V++   G+ +   PPLII+  ++D+ V+
Sbjct: 382 AVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLIITAAQVDEMVD 441

Query: 438 ILCKTL 443
              + L
Sbjct: 442 RFGRAL 447

Length = 460

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score =  166 bits (423), Expect = 3e-46
 Identities = 118/428 (27%), Positives = 201/428 (46%), Gaps = 75/428 (17%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY--Y 138
           P+V+   +G  +YD  G++YLD  +G+   ALG  +   + A  +Q N L    + +   
Sbjct: 72  PLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRT 131

Query: 139 SIPQIELAKRLVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
           + P ++LAK L+    A    +VFF+N+G+EAN+  +K    +   +N   +    +F++
Sbjct: 132 TKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYY---NNALGRPNKKKFIA 188

Query: 196 FTNSFHGRTMGALALTSKEHYRSPFE-PV---------------MPGVNFVEYGNIEATR 239
            + S+HG T+ + +L+        F+ P                +PG    E+    +TR
Sbjct: 189 RSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEF----STR 244

Query: 240 ------KLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
                  LI    P   AA   EP+ G GG+      + + ++        L + DEV C
Sbjct: 245 LADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVIC 304

Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-----YGD--HG 342
             GR G ++  + Y I PD+++LAK L+   +PIGA LV+ +++  I+      G   HG
Sbjct: 305 AFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHG 364

Query: 343 STFAGSPLVCNAAIAVL------------DKISNPAFLAS--KLARNPHVKDVRGLGLII 388
            T++G P+ C  A+  L            +KI+ P F       + +P + ++RG GLI+
Sbjct: 365 FTYSGHPVSCAVALEALKIYKERNIPEHVNKIA-PRFQDGIKAFSGSPIIGEIRGTGLIL 423

Query: 389 GIEFDVSATP-------------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 435
           G EF  + +P                 C+  G+LV  A  G+ + + PPLII+ +E+D+ 
Sbjct: 424 GTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA--GDNIMMSPPLIITPEEVDEL 481

Query: 436 VEILCKTL 443
           + I  K L
Sbjct: 482 ISIYGKAL 489

Length = 504

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  170 bits (433), Expect = 6e-46
 Identities = 127/446 (28%), Positives = 194/446 (43%), Gaps = 80/446 (17%)

Query: 59   GRNNKEVMEAEKKLLVG----TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH 114
            GR+  E++   K+ L+     +Y   P+    G G  L D  GR YLD  +   V  +GH
Sbjct: 582  GRDKAEILRERKEHLLPNLSISY-SDPIKFVRGWGVWLIDNRGRAYLDCFNN--VCHVGH 638

Query: 115  GDADWIKAVVDQANVLTHVSNMYYSIP-QIELAKRLVACSFADRV---FFSNTGTEANEA 170
                 + A   QA  L   +N  Y     +  A+RL A +  D +   FF N+G+EAN  
Sbjct: 639  AHPRVVAAAARQAARLN--TNTRYLHDAIVAYAERLTA-TLPDGLTVAFFVNSGSEANSL 695

Query: 171  AIKFARKF--QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-----------KEH-- 215
            A++ AR    QR +           +   +++HG T   + L+             +H  
Sbjct: 696  ALRLARAHTGQRDA-----------IVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVE 744

Query: 216  -------YRSPFEPVMP--GVNFVEY--GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264
                   YR P        G  F E     I A     +    A    E I    G    
Sbjct: 745  VAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAA--KGRGPAFFIAESIPSVAGQIFL 802

Query: 265  TKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-YLWAHEHYGIFPDIMTLAKPLAGGLPI 323
             + +L+ +      AG + + DEVQ G GR G + WA E  G+ PDI+T+ KP+  G P+
Sbjct: 803  PEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPM 862

Query: 324  GAALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKI------SNPAFLASKL---- 372
            GA + T ++A + + G ++ +TF G+P+ C   +AVLD I       N   + + L    
Sbjct: 863  GAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGL 922

Query: 373  ----ARNPHVKDVRGLGLIIGIEF---DVSATP-------VVDACRDSGLLVLTAG-KGN 417
                 R   + DVRG+GL +GIE      +  P       V +  R+ G+L+ T G   N
Sbjct: 923  RELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDN 982

Query: 418  VVRLVPPLIISEQELDQAVEILCKTL 443
            V+++ PPLI S  + D  +E+L   L
Sbjct: 983  VLKIRPPLIFSRADADHLLEVLDDVL 1008

Length = 1013

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  161 bits (409), Expect = 1e-44
 Identities = 124/413 (30%), Positives = 195/413 (47%), Gaps = 68/413 (16%)

Query: 82  VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-I 140
           V +A G+G  L   +GR YLD  S    N  GH +     A+  QA  L  V    ++  
Sbjct: 48  VPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHE 107

Query: 141 PQIELAKRLVACSFAD-------RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
           P ++LA++L+A +          +VF+++ G+   E A+K A  F    N   +   T F
Sbjct: 108 PAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA--FHYFHNRG-EHRRTRF 164

Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVM---------------PGVNFVEYGNI--E 236
           ++  N +HG T+GALA+     YR  + P++               PG +  +Y     +
Sbjct: 165 IALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAAD 224

Query: 237 ATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
           A + L +  PG+  A+ +EP +Q  GG+      +L+  R+ CD  GA L+ DE+  G G
Sbjct: 225 ALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284

Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGST 344
           RTG L+A E  G+ PD++ L+K L GG LP+ A L T+++  A  + D        H  +
Sbjct: 285 RTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDA--FLDDSRERAFLHSHS 342

Query: 345 FAGSPLVCNAAIAVLDKISNPAF-------------LASKLARNPHVKDVRGLGLIIGIE 391
           + G+PL C AA+A LD  ++                LA+++  +PHV DVR  G+++  E
Sbjct: 343 YTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFE 402

Query: 392 FDVSA---TPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQEL 432
                   TP   A R  GL    A           G+V+  +PP  + E +L
Sbjct: 403 LTRGGNKRTPFPPAAR-VGLHAYRAALARGVVLRPLGDVLYWMPPYCVDEAQL 454

Length = 472

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score =  159 bits (403), Expect = 6e-44
 Identities = 130/410 (31%), Positives = 201/410 (49%), Gaps = 63/410 (15%)

Query: 81  PVVLASGKGCKLYDAEGREYLD-LSSG-IAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
           PVV A G  C+L  A+GR  +D +SS   A++   H   +   A+  Q + ++HV  M+ 
Sbjct: 28  PVVSAEG--CELILADGRRLVDGMSSWWAAIHGYNHPQLN--AAMKSQIDAMSHV--MFG 81

Query: 139 SI---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
            I   P IEL ++LVA +    + VF +++G+ A E A+K A ++ +       EP   F
Sbjct: 82  GITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EPRQRF 137

Query: 194 VSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEY-----------GNIEATRKL 241
           ++  + +HG T GA+++   ++   S ++  +P   F               +I    +L
Sbjct: 138 LTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARL 197

Query: 242 IQP--GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
           +     + AAV +EPI QG GG+     E+L+ +R  CD  G LL+ DE+  G GRTG L
Sbjct: 198 MAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKL 257

Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLVC 352
           +A EH GI PDI+ L K L GG + + A L T +VA  I+ G+     HG TF G+PL C
Sbjct: 258 FACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLAC 317

Query: 353 NAAIAVLDKISN----------PAFLAS---KLARNPHVKDVRGLGLIIGIEFDVSATPV 399
             A A L  + +           A L      L   P V DVR LG  IG+   V  T  
Sbjct: 318 AVANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPMVADVRVLG-AIGV---VETTRP 373

Query: 400 VDACR------DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           V+         + G+ +   GK  ++ L+PP II  ++L +    + + +
Sbjct: 374 VNMAALQRFFVEQGVWIRPFGK--LIYLMPPYIILPEQLQRLTAAVNRAV 421

Length = 428

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score =  158 bits (402), Expect = 1e-43
 Identities = 122/437 (27%), Positives = 183/437 (41%), Gaps = 96/437 (21%)

Query: 84  LASGKGCKLYDA-EGREYLDLSSGIAVNALGH------GDADWIKAVVDQANVLTHVSNM 136
           L   +G  L DA  GR YLD+ +  A +ALG        D ++   +   A  L   SN 
Sbjct: 30  LERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAA--LNKPSNS 87

Query: 137 -YYSIPQIELAK---RLVACSFADRVFFSNTGTEANEAAIKFA-----RKFQRHSNPDSK 187
             Y++          R++       +FF + G  A E A+K A     RK +      + 
Sbjct: 88  DVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPAL 147

Query: 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-------PGVNFVEYG-NIEAT- 238
              T+ +    +FHGR+   L+LT+ +  ++   P         P + F   G ++E   
Sbjct: 148 --GTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVE 205

Query: 239 ----RKLIQ--------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286
                 L Q        P   A    EPIQGEGG      EF   +R+ CD+  ALL+FD
Sbjct: 206 ALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFD 265

Query: 287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTE------KVAS 334
           EVQ G+G TG  WA++  G+ PDI+   K       +AG        V E       V+S
Sbjct: 266 EVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQVCGIMAGR------RVDEVEDNVFAVSS 319

Query: 335 AINYGDHGSTFAGS-----------------PLVCNAAIAVLDKISNPAFLASKL----A 373
            IN     ST+ G+                  LV NAA           +L ++L    A
Sbjct: 320 RIN-----STWGGNLVDMVRARRILEVIEEDGLVENAARQ-------GEYLLARLEELAA 367

Query: 374 RNPH-VKDVRGLGLIIGIEFDVSAT--PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQ 430
             P  V +VRG GL+   +   +A    V+    + G+LVL  G+   +R  P L ++ +
Sbjct: 368 EFPAVVSNVRGRGLMCAFDLPTTADRDEVIRRLWEEGVLVLPCGE-RSIRFRPALTVTTE 426

Query: 431 ELDQAVEILCKTLPVLD 447
           E+D A++ L + LP + 
Sbjct: 427 EIDAAIDALRRALPEVA 443

Length = 443

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score =  158 bits (402), Expect = 1e-43
 Identities = 128/424 (30%), Positives = 190/424 (44%), Gaps = 64/424 (15%)

Query: 79  RAPVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVLTHVSNMY 137
           R   VLAS KG  L DA G + LD  +G+  VN  G+G    ++A  +Q   L + +  +
Sbjct: 27  RGVTVLASAKGATLTDASGHQLLDAFAGLWCVNV-GYGQESIVEAAAEQMRELPYATGYF 85

Query: 138 Y--SIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
           +  S P I LA +L   +      V+F+  G++A ++A++F R +   +   SK+   +F
Sbjct: 86  HFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKK---QF 142

Query: 194 VSFTNSFHGR-TMGA-------------LALTSKEH------YRSPFEPVMPGVNFVEYG 233
           +S    +HG  ++GA             L L  +        YR+P       +      
Sbjct: 143 ISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVA 202

Query: 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
            + A    +     AA F EPIQG GG+    K +L+ +R+AC + G L V DEV  G G
Sbjct: 203 ALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFG 262

Query: 294 RTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALVTEKVASAINYG-------DHGSTF 345
           RTG L+A E  G+ PD+MT+AK L +G +P+GA L+++ V   I  G        HG T+
Sbjct: 263 RTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTY 322

Query: 346 AGSPLVCNAAIAVLDKISNPAFLASKLARNPH-------------VKDVRGLGLIIGIE- 391
           +  P+     + VL        LA+     P              V DVRG GL+  +E 
Sbjct: 323 SAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALEL 382

Query: 392 ---------FDVSATP---VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
                    FD +  P   + D    +G LV  A    V+   P L  +E E D   E  
Sbjct: 383 VADKATKTPFDAALDPADRIFDRAYANG-LVFRAFGDGVLGFAPALCCTEGEFDLIFERT 441

Query: 440 CKTL 443
            KTL
Sbjct: 442 RKTL 445

Length = 459

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  158 bits (401), Expect = 1e-43
 Identities = 128/421 (30%), Positives = 188/421 (44%), Gaps = 66/421 (15%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
            + +A G+G  LYD +GR YLD  S   VN  GH +     A+ DQ + L H   M    
Sbjct: 37  LLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHA--MLAGC 94

Query: 141 ---PQIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
              P IELA+RL A +       FF++ G  A E A+K +    R+     K    EFV 
Sbjct: 95  THEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKR---EFVC 151

Query: 196 FTNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGNIEA---------T 238
             N +HG T+GAL +T    ++  ++P++        P       G   A          
Sbjct: 152 LANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADV 211

Query: 239 RKLIQP--GKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
           R+L     GK AA+ VEP +Q   G+      +L+ LR  CD  G  L+ DE+  G GRT
Sbjct: 212 RRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRT 271

Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGS 348
           G  +A E  G++PD + L+K ++GG LP+   L  + + +A    D      H  ++ G+
Sbjct: 272 GTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGN 331

Query: 349 PLVCNAAIAVLDKISNPAFLASK-------------LARNPHVKDVRGLGLIIGIEFDVS 395
           PL C AA+A LD  +    LA               LA +P V+ +R  G I    FDV+
Sbjct: 332 PLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFA--FDVA 389

Query: 396 ATPVV---------DACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
                         +A  +  LL+     G  V L+PP ++ + E+    E   +T   L
Sbjct: 390 LDGDAARTFSRRFFEAALERELLLRPI--GTTVYLMPPYVLDDDEIAWLAE---RTRATL 444

Query: 447 D 447
           D
Sbjct: 445 D 445

Length = 453

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  154 bits (393), Expect = 2e-42
 Identities = 109/355 (30%), Positives = 159/355 (44%), Gaps = 85/355 (23%)

Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLD--LSSGIA 108
            ++E+ E  KKL+ G  N   RA       P  +   KG  LYD +G EY+D   S G  
Sbjct: 3   KSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPM 62

Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAK---RLVACSFADRVFFSN 162
           +  LGH   + ++AV++ A        + +  P   ++ELA+    LV     + V   N
Sbjct: 63  I--LGHAHPEVVEAVIEAAE-----KGLSFGAPTELEVELAELVIELVPS--IEMVRMVN 113

Query: 163 TGTEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGR-------------TMGAL 208
           +GTEA  +AI+ AR +  R      K      + F   +HG              T+G  
Sbjct: 114 SGTEATMSAIRLARGYTGR-----DK-----IIKFEGCYHGHADSLLVKAGSGAATLGL- 162

Query: 209 ALTSKEHYRSPFEPVMPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGE 258
                        P  PGV  +F        Y ++EA  +L +    + AAV VEP+ G 
Sbjct: 163 -------------PDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGN 209

Query: 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA 318
            G+      FL+ LR+ CD+ GALL+FDEV  G  R     A  +YG+ PD+ TL K + 
Sbjct: 210 MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIG 268

Query: 319 GGLPIGA----ALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNPAF 367
           GGLP+GA      + E++A     G      T +G+PL   A +A L  +  P F
Sbjct: 269 GGLPVGAFGGRREIMEQLAPL---GPVYQAGTLSGNPLAMAAGLATLKLLKEPGF 320

Length = 426

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  148 bits (376), Expect = 4e-40
 Identities = 125/405 (30%), Positives = 194/405 (47%), Gaps = 60/405 (14%)

Query: 86  SGKGCKLYDAEGREYLD-LSSGIAVNAL-GHGDADWIKAVVDQANVLTHVSNMYYSI--- 140
              G  +   +GR  +D +SS  A  AL G+       A  +Q   ++H+  M+      
Sbjct: 32  RADGVMITLKDGRRLIDGMSSWWA--ALHGYNHPRLNAAATNQLAKMSHI--MFGGFTHE 87

Query: 141 PQIELAKRLVAC--SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
           P +ELA++L+       +++FF+++G+ A E A+K A ++Q  +  + +   T+F +  +
Sbjct: 88  PAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQ-QAKGEVQR--TKFATIRS 144

Query: 199 SFHGRTMGALAL----TSKEHYRSPFEPVM-----PGVNFVEYGNIEATRKLIQP----- 244
            +HG T  A+++    T      +   PV      P + F E  N EA    I+P     
Sbjct: 145 GYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEA----IEPLQDLL 200

Query: 245 ----GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
                + AA+ +EP+ QG GG+Y  +  +L   R+ CD  G LL+FDE+  G GRTG L+
Sbjct: 201 EQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLF 260

Query: 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLVCN 353
           A EH G+ PDIM + K L GG L + A + TE +A  I  G+     HG TF  +PL C 
Sbjct: 261 ALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACA 320

Query: 354 AA---IAVL---DKISNPAFLASKL-------ARNPHVKDVRGLGLIIGIEFD--VSATP 398
            A   I +L       N   + ++L       A    V +VR LG I  +E    V+   
Sbjct: 321 IAAESIRLLLESPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMAT 380

Query: 399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           +     + G+ V   GK  +V ++PP IIS  EL Q    L + L
Sbjct: 381 LQPRFVEHGIWVRPFGK--LVYIMPPFIISPDELSQLTSGLLRVL 423

Length = 429

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score =  148 bits (375), Expect = 6e-40
 Identities = 122/441 (27%), Positives = 213/441 (48%), Gaps = 67/441 (15%)

Query: 59  GRNNKEVMEAEKKLL---VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG 115
           G   KE++E EK++L   +G     P+V   G G  + D +G  ++D  +G A  + G+ 
Sbjct: 12  GPKAKELIEREKRVLSPGIGV-KLFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYS 70

Query: 116 DADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAI 172
               +KAV +Q  ++ H    Y +S   I +A++L   S  +  +V F  +G++A + AI
Sbjct: 71  HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAI 130

Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-KEHYRSPFEPVMPGVNFVE 231
           K ++   R             ++F  ++HG+T+GA ++ + +   +  F P+MP V ++ 
Sbjct: 131 KVSKFSTRRP---------WILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIP 181

Query: 232 YGN----------IEATRKLIQ----------------PGKTAAVFVEPIQGEGGIYSAT 265
           Y N           E   +LI                 P + AA+F EPIQG+ GI    
Sbjct: 182 YPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPP 241

Query: 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA 325
           + F + L+   D+ G LLV DEVQ G+GRTG  +A E + + PD++   K +A G+ +  
Sbjct: 242 ENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASGMGLSG 301

Query: 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPHVK------ 379
            +  +++   +  G    T A +P++  AA A L+ I     L + L     +K      
Sbjct: 302 VIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEM 360

Query: 380 --------DVRGLGLIIGIEF-DVSATPVVDACR-------DSGLLVLTAGK-GNVVRLV 422
                   DVRG GL+IG+E    +  P  +          + GL++ + G  GNV+R+ 
Sbjct: 361 KESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRIT 420

Query: 423 PPLIISEQELDQAVEILCKTL 443
           PPL+I+++  ++ +EI+ + +
Sbjct: 421 PPLVITKEIAEKGLEIMERAI 441

Length = 457

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score =  147 bits (373), Expect = 1e-39
 Identities = 117/416 (28%), Positives = 176/416 (42%), Gaps = 70/416 (16%)

Query: 84  LASGKGCKLYDA-EGREYLDLSSGIAVNALGH------GDADWIKAVVDQANVLTHVSNM 136
           L   +G  L DA +GR YLD+ S  A  ALG        D  +   +   A  +   SN 
Sbjct: 23  LDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAA--VNKPSNS 80

Query: 137 -YYSIPQIELAK---RLVACSFADRVFFSNTGTEANEAAIKFA-----RKFQRHSNPDSK 187
             Y++          R++       +FF   G  A E A+K A     R  Q    P + 
Sbjct: 81  DVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAAL 140

Query: 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM----------------PGVNFVE 231
              T+ +    +FHGR+   L+LT+ +  ++   P                  P ++ V 
Sbjct: 141 --GTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVI 198

Query: 232 YGNIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286
               EA R+        P   A    EPIQGEGG      EFL+ +R  CD+  ALL+FD
Sbjct: 199 ALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFD 258

Query: 287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGD 340
           EVQ G+G TG  WA++  G+ PDI+   K       +AG      A     V S +N   
Sbjct: 259 EVQTGVGLTGTAWAYQQLGVQPDIVAFGKKTQVCGIMAGRRVDEVADNVFAVPSRLN--- 315

Query: 341 HGSTFAGSPLVCNAAIAVLDKISNP----------AFLASKL----ARNPH-VKDVRGLG 385
             ST+ G+ +    A  +L+ I             A L ++L    A  PH V + RG G
Sbjct: 316 --STWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRG 373

Query: 386 LIIGIEFDVSAT--PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
           L+   +   +A    V+      G+L+L  G+   +R  PPL ++ +E+D A++ +
Sbjct: 374 LMCAFDLPSTADRDEVIRQLYREGVLLLGCGE-RSIRFRPPLTVTREEIDAAIDAI 428

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  146 bits (369), Expect = 3e-39
 Identities = 115/400 (28%), Positives = 179/400 (44%), Gaps = 57/400 (14%)

Query: 80  APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139
              ++ S  G  L   +G   +D  S     A GHG      A   Q + ++HV  M+  
Sbjct: 22  RNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHV--MFGG 79

Query: 140 I---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPATEF 193
           +   P I+L ++L+  +    D VF+S++G+ + E AIK A ++ +   +P+     T  
Sbjct: 80  LTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPER----TRL 135

Query: 194 VSFTNSFHGRTMGALAL-------------TSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
           +++ + +HG T  A+++             T  E   +P  PV           + +   
Sbjct: 136 LTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLEL 195

Query: 241 LIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
           LI     AA+ +EPI QG GG+       ++ +R  CD    LL+ DE+  G GRTG L+
Sbjct: 196 LID-ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF 254

Query: 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGSPLVC 352
           A    G+ PDIM + K L GG +   A L T+KVA  I+  +      HG TF  +PL C
Sbjct: 255 ATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLAC 314

Query: 353 NAAIAVLDKISNPAFLA-------------SKLARNPHVKDVRGLGLIIGIEFDVSATPV 399
             A A L+ I    +               S LA  P V DVR LG I  +E      PV
Sbjct: 315 AVAHASLEIIETGMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEM---EQPV 371

Query: 400 -----VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
                  A  D G+ +   G+  +V ++PP I + +++ Q
Sbjct: 372 DMEEATQAAVDHGVWLRPFGR--LVYVMPPYITTSEQIAQ 409

Length = 422

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score =  144 bits (366), Expect = 1e-38
 Identities = 110/422 (26%), Positives = 189/422 (44%), Gaps = 69/422 (16%)

Query: 80  APVVLASGKGCKLYDAEGREYLDLSSGI-AVNALGHGDADWIKAVVDQANVLT--HVSNM 136
              ++  G+G ++ DA+GR Y+D  +G+  VN +G+G  +  +A+ +QA  L   H    
Sbjct: 32  PGRIVEGGEGIRITDAQGRRYIDAFAGLYCVN-VGYGRTEVAEAIAEQAKELAYYHTYVG 90

Query: 137 YYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPATEF 193
           + +   I L+KR++  + A   +V++  +G++ANE  IK    +      P+ K+     
Sbjct: 91  HGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKK----I 146

Query: 194 VSFTNSFHGR-----TMGALAL---------------TSKEHYRSPFEPVMPGVNFVEYG 233
           +S    +HG      ++  L+L                +  +YR   +  M    F  Y 
Sbjct: 147 ISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRA-DAGMSEEQFSAYC 205

Query: 234 NIEATRKLIQPG-KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
             E    ++  G  T A F+ EP+ G GGI      +   ++        LL+ DEV  G
Sbjct: 206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTG 265

Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGS 343
            GR G ++  +HYGI PD++T+AK L     P+  ++V EKV   +  G        HG 
Sbjct: 266 FGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGW 325

Query: 344 TFAGSPLVCNAAIAVLDKISNP--------------AFLASKLARNPHVKDVRGLGLIIG 389
           T++G P+   AA+A LD +                 A L +    +P V +VRG+G++  
Sbjct: 326 TYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAA 385

Query: 390 IE----------FDVSAT---PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
           +E          FD +      V  A  + G++      G+++   PPL+++  E D+ V
Sbjct: 386 VEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIV 445

Query: 437 EI 438
            I
Sbjct: 446 AI 447

Length = 461

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score =  142 bits (361), Expect = 5e-38
 Identities = 99/346 (28%), Positives = 153/346 (44%), Gaps = 49/346 (14%)

Query: 62  NKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVNA 111
           ++ + E  K++  G  N   RA       P  +A GKG  LYD +G EY+D         
Sbjct: 2   SENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLI 61

Query: 112 LGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTGTEA 167
           LGH     ++AV +     T      Y  P   +I LAK +++     + V F N+GTEA
Sbjct: 62  LGHAHPRVVEAVKEALERGTS-----YGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEA 116

Query: 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGR--TMGALALTSKEHYRSPFEPVMP 225
             +A++ AR +             + + F   +HG    +   A +       P  P +P
Sbjct: 117 TMSAVRLARGYTGRD---------KIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVP 167

Query: 226 G-----VNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD 278
                    + Y ++EA  ++ +    + A V VEP+ G  G+     EFL  LR   ++
Sbjct: 168 EDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEE 227

Query: 279 AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA----ALVTEKVAS 334
            G+LL+FDEV  G  R     A E++G+ PD+ TL K + GGLP+GA      + E++A 
Sbjct: 228 YGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAP 286

Query: 335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF------LASKLAR 374
                  G T +G+PL   A +A L  +           LA +LA 
Sbjct: 287 EGPVYQAG-TLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAE 331

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score =  136 bits (343), Expect = 2e-35
 Identities = 112/424 (26%), Positives = 189/424 (44%), Gaps = 66/424 (15%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           P V+  G+G  L+D +G+ YLD  SG+    LG+G  D   A   Q   L +  NM++  
Sbjct: 37  PRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYY-NMFFHT 95

Query: 141 --PQ-IELAKRLVAC--SFADRVFFSNTGTEANEAAIKFARKF-QRHSNPDSKEPATEFV 194
             P  IEL++ L +          ++N+G+EANE  I+  R++ Q    P  K      +
Sbjct: 96  THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKI----MI 151

Query: 195 SFTNSFHGRTMGALALTSKE--HYRSPFEPVMPGVN----FVEYGNI-----------EA 237
              N +HG T+ A AL   +  H      P +  ++    +   G +           + 
Sbjct: 152 GRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQL 211

Query: 238 TRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
             K+++ G    A    EP QG GG+    + +   ++  C     LL  DEV  G GRT
Sbjct: 212 EEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRT 271

Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASA-INYGD---HGSTFAGSPL 350
           G  +AHEH+G  PD +++AK L  G +P+G  ++++++A A +  G    HG T++G P+
Sbjct: 272 GEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPV 331

Query: 351 VCNAAIAVLDKISNPAF---------------LASKLARNPHVKDVRGLGLIIGIEFD-- 393
               AIA L  + +                  L      +P V +V+G GL+  ++F   
Sbjct: 332 AAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAED 391

Query: 394 -------VSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
                   +   +   CR  G    +++ +  G ++ + P L+    E+D+ V+   KT 
Sbjct: 392 KATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMI-MAPALVAGRAEIDELVD---KTR 447

Query: 444 PVLD 447
             +D
Sbjct: 448 IAVD 451

Length = 460

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score =  131 bits (331), Expect = 2e-33
 Identities = 115/411 (27%), Positives = 170/411 (41%), Gaps = 95/411 (23%)

Query: 4   AMSSTFQAPLQVPLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNK 63
           A  +     L      S       +   V+   +  A SV  +       S        +
Sbjct: 3   AALAGSALGLSCSAKPSARRSSSQRRRAVRSSVIKMAVSVEEKKKFTTTKS--------E 54

Query: 64  EVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIAVNA 111
           E+ +A K+L+ G  N   RA       P+V    KG   +D +G EY+D   S G A+  
Sbjct: 55  EIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAI-- 112

Query: 112 LGHGDADWIKAVVDQA-------------NVLTHVSNMYYSIPQIELAKRLVACSFADRV 158
           +GH D + + A+ +               NVL  +  +  ++P +E+            V
Sbjct: 113 IGHADDEVLAALAETMKKGTSFGAPCLLENVLAEM--VIDAVPSVEM------------V 158

Query: 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGAL 208
            F N+GTEA    ++ AR +        +E   + + F   +HG            +  L
Sbjct: 159 RFVNSGTEACMGVLRLARAYT------GRE---KIIKFEGCYHGHADSFLVKAGSGVATL 209

Query: 209 ALTSKEHYRSPFEPVMPGVN--------FVEYGNIEATRKLIQ--PGKTAAVFVEPIQGE 258
            L           P  PGV            Y ++EA +KL +   G+ AAV +EP+ G 
Sbjct: 210 GL-----------PDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGN 258

Query: 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA 318
            G     KEFL+ LR+   + GALLVFDEV  G  R  Y  A E++GI PD+ TL K + 
Sbjct: 259 SGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIG 317

Query: 319 GGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
           GGLP+GA      + E VA A      G T +G+PL   A I  L ++  P
Sbjct: 318 GGLPVGAYGGRREIMEMVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLQQP 367

Length = 474

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  121 bits (305), Expect = 2e-29
 Identities = 114/425 (26%), Positives = 181/425 (42%), Gaps = 76/425 (17%)

Query: 76  TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN 135
            Y   P  +  G    L+D  GR YLD+ + + V  LGHG      A   Q ++L   S 
Sbjct: 563 HYYADPPQIERGWRHHLFDMAGRSYLDMVNNVTV--LGHGHPRLAAAAARQWSLLNTNSR 620

Query: 136 MYY-SIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
            +Y ++   E ++RL A +    D VF  N+G+EAN+ AI+ A      S         +
Sbjct: 621 FHYAAV--AEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWA---ASG------RRD 669

Query: 193 FVSFTNSFHGRTMGALAL---------------------TSKEHYRSPFEPVMPGVNFVE 231
            VS   ++HG T+   A+                      S   YR  F       ++V 
Sbjct: 670 VVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVR 729

Query: 232 YGNIEATRK---LIQPGKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
               +   +   L   G+  A F+ EP+ G  G  +    +LQ +  A    G + + DE
Sbjct: 730 ----DVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADE 785

Query: 288 VQCGLGRTG-YLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFA 346
           VQ G GR G Y W  E  G+ PDI+T+AK +  G P+GA +   ++A A      G  F+
Sbjct: 786 VQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAEA--LEAEGYFFS 843

Query: 347 ---GSPLVCNAAIAVLDKISNP----------AFLASKL----ARNPHVKDVRGLGLIIG 389
              GSP+ C   +AVLD +               L ++L     R+P +  V G+GL +G
Sbjct: 844 STGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLG 903

Query: 390 IEFDV----------SATPVVDACRDSGLLVLTAGKG-NVVRLVPPLIISEQELDQAVEI 438
           +E                 + D   + G+++   G   N++++ PPL +  +  D  V++
Sbjct: 904 VELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDM 963

Query: 439 LCKTL 443
           L + L
Sbjct: 964 LDRVL 968

Length = 972

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score =  118 bits (297), Expect = 4e-29
 Identities = 117/425 (27%), Positives = 173/425 (40%), Gaps = 79/425 (18%)

Query: 89  GCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAK 147
           G  L D +G   LDL S I+   +G+ +   +KA        T ++       P  + AK
Sbjct: 49  GNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAK 108

Query: 148 RL------VACSFADRVFFSNTGTEANEAAIKFA----RKFQRHSNPD-SKE-------- 188
            L      VA    D+V+   +G++ANE A K A    R  QR    D S+E        
Sbjct: 109 ILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDN 168

Query: 189 -----PATEFVSFTNSFHGRTMGALALT-SKEHYR----------SPFEPV-MPGVNFVE 231
                P    +SF  +FHGR  G+L+ T SK  ++          +PF  +  P    V+
Sbjct: 169 QAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVK 228

Query: 232 YGNIEATRKLIQ--------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALL 283
               E  R L +            AA+ VEPIQ EGG   A+ +F + LRD         
Sbjct: 229 ENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAF 288

Query: 284 VFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH 341
           + DEVQ G+G TG  WAHEH+ +   PD++T +K        G             Y   
Sbjct: 289 IVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTA---GYFFHDPAFRPNKPY-RQ 344

Query: 342 GSTFAGSPLVCNAAIAVLDKIS------NPA----FLASKL----ARNP-HVKDVRGLGL 386
            +T+ G P        ++ +I       N A    +L + L     + P  ++++RG G 
Sbjct: 345 FNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGR 404

Query: 387 IIGIEFDVSATPVVDACRDSGLLVLTAGKG--------NVVRLVPPLIISEQELDQAVEI 438
              I +D   TP  +A RD  LL      G          +RL P L+  +   D  +EI
Sbjct: 405 GTFIAWD---TP-DEAKRDK-LLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEI 459

Query: 439 LCKTL 443
           + K +
Sbjct: 460 ISKII 464

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  112 bits (281), Expect = 6e-27
 Identities = 94/307 (30%), Positives = 139/307 (45%), Gaps = 41/307 (13%)

Query: 80  APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139
           APVV+  GKG   YD +G +Y+D  +       GH      KA+ + A      + + Y 
Sbjct: 35  APVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAE-----NGVLYG 89

Query: 140 IP---QIELAKRL-VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
            P   +IE AK L  A    ++V F N+GTEA    I+ AR +            T+ + 
Sbjct: 90  TPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGR---------TKIIK 140

Query: 196 FTNSFHGRT--------MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--G 245
           F   +HG +         G   L + +    P + +   V  V + +IEA ++ +     
Sbjct: 141 FAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVP-KSIAQEVITVPFNDIEALKEALDKWGD 199

Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
           + AAV VEPI G  GI      FL+ + +   +AGAL+++DEV     R  Y  A +  G
Sbjct: 200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLG 258

Query: 306 IFPDIMTLAKPLAGGLPIGA----ALVTEKVA---SAINYGDHGSTFAGSPLVCNAAIAV 358
           + PD+  L K + GGLPIGA      + E+VA    A   G    T AG+P    A IA 
Sbjct: 259 VEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAG----TMAGNPASMAAGIAC 314

Query: 359 LDKISNP 365
           L+ +   
Sbjct: 315 LEVLQQE 321

Length = 428

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 94.7 bits (236), Expect = 5e-21
 Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 48/271 (17%)

Query: 76  TYNR--------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA 127
           TY +        AP  +  G G  ++D +G EY++   G+    LGH     ++AV +  
Sbjct: 18  TYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREA- 76

Query: 128 NVLTHVSNMYY-SIPQIELAKRLVA-CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPD 185
             L    N    S  +++ A+  +     AD V F   G++A  AA++ AR +   +  D
Sbjct: 77  --LQDGCNFTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAY---TGRD 131

Query: 186 -----SKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
                +  P   F S  + F G T  +  + +     +        V F  Y +I +   
Sbjct: 132 LVARCADHP---FFSTDDWFIGTTPMSAGIPASVSALT--------VTF-RYNDIASLEA 179

Query: 241 LIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
           L +  PG+ A V +EP   +         FL  +R  C + GAL + DE+      TG+ 
Sbjct: 180 LFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMI-----TGFR 230

Query: 299 W----AHEHYGIFPDIMTLAKPLAGGLPIGA 325
           W    A + YGI PD+    K L  G  + A
Sbjct: 231 WHMRGAQKLYGIVPDLSCFGKALGNGFAVSA 261

Length = 431

>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated

 Score = 79.2 bits (196), Expect = 7e-16
 Identities = 85/330 (25%), Positives = 127/330 (38%), Gaps = 64/330 (19%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA-NVLTHVSNMYYS 139
           P+ +A  +G +  D +G  Y D   G      GH  A   +A+ +QA   LT    M  S
Sbjct: 58  PLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTT---MLPS 114

Query: 140 IPQIELAKRLVACSFADRVF------FSNTGTEANEAAIKFARKF-QR----------HS 182
                + + L     A R F       + T T+AN   +++AR    R          H 
Sbjct: 115 EDAAWVGEEL-----ARR-FGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHG 168

Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
             D       FV   +   GR +    L  + H  +    V      VE+ ++ A    +
Sbjct: 169 TVDDV-----FVDLVD---GRPVQRPGLLGQVHDLTATTRV------VEFNDLAALEAAL 214

Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE---VQCGLGRTGYLW 299
             G  AAV  EP     G+      F + LR+     G LLV DE   +  G G  GY  
Sbjct: 215 ADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPG--GYTR 272

Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN------YGDH---GSTFAGSPL 350
           AH   G+ PD + + KP+AGG+P      + ++A             H   G+T + + L
Sbjct: 273 AH---GLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANAL 329

Query: 351 VCNAAIAVLDKISNPAF------LASKLAR 374
              A  A L ++   A       LA++LA 
Sbjct: 330 AMAAMRATLAEVMTEAAYAHMLALAARLAA 359

Length = 453

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 64/225 (28%), Positives = 90/225 (40%), Gaps = 36/225 (16%)

Query: 243 QPGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH 301
           + G  AA+ +EP + G GG+      F + L   C      ++FDEV  GL R G   A 
Sbjct: 581 KNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAW 640

Query: 302 EHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGD-------HGSTFAGSPLVCN 353
           E  G  PDI   AK L GGL P+ A L TE+V  A   G        HG ++   P+ C 
Sbjct: 641 ELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAF-RGPSKLDALLHGHSYTAHPMGCA 699

Query: 354 AAIAVLDKISNPAF------------------LASKLARNPHVKDVRGLGLIIGIEFDVS 395
           AA   L    +P+                   L   ++  P+V+ V  LG ++ +E D  
Sbjct: 700 AAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAE 759

Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
                     S L      +  V RL     I  + L   V ++C
Sbjct: 760 G----SGSGYSSL----YARSVVRRLRREDGIYARPLGNVVYLMC 796

Length = 817

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 37/172 (21%), Positives = 54/172 (31%), Gaps = 24/172 (13%)

Query: 144 ELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFH 201
           EL ++L  +     D+  F  +GT ANEAA+                P  E +   N   
Sbjct: 4   ELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG-----------PGDEVIVDANGHG 52

Query: 202 GRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGI 261
            R   A  L      +    PV           I    +L      A + + P    GG+
Sbjct: 53  SRYWVAAELAG---AKPVPVPVDDAGYGGLDVAIL--EELKAKPNVALIVITPNTTSGGV 107

Query: 262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313
               KE    +R    + G LL+ D    G             G   D++T 
Sbjct: 108 LVPLKE----IRKIAKEYGILLLVDAASAGGASPA-PGVLIPEG-GADVVTF 153

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 72/307 (23%), Positives = 113/307 (36%), Gaps = 38/307 (12%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           P +++S  G    D+ G+ ++D          GH       A+  Q       S    S 
Sbjct: 36  PPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAI--QQGAERGTSYGLTSE 93

Query: 141 PQIELAKRLVAC-SFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
            +I  A+ L +     D ++ F ++GTEA   A++ AR     S           + F  
Sbjct: 94  QEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRS---------IIIKFLG 144

Query: 199 SFHGRTMGALALTSKEH-------YRSPFEPVMPGVNFVEYGNIEATRKLI-QPG-KTAA 249
            +HG     L   S          +    +   P    + Y + +  + ++   G + A 
Sbjct: 145 CYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAG 204

Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
           V  EPI    G+      F++ +   C   G+L + DEV  G  R     A   Y + PD
Sbjct: 205 VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPD 263

Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDH---------GSTFAGSPLVCNAAIAVLD 360
           I    K L GGLP  AA+V  K     +  DH           T +G+PL   A  A ++
Sbjct: 264 ITVYGKILGGGLPA-AAVVAHK-----SIMDHLAPEGTIFQAGTLSGNPLAMAAGKASIN 317

Query: 361 KISNPAF 367
                 F
Sbjct: 318 LCREQGF 324

Length = 433

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 155 ADRVFFSNTGTEANEAAIKFA-RKF---QRHSNPDSKEPATE------FVSFTNSFHGRT 204
           A RVFFS+ G+ A E A+K A RKF            E           ++   S+HG T
Sbjct: 427 ASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDT 486

Query: 205 MGALALTSKEHYRSP 219
           +GA+   +   +   
Sbjct: 487 LGAMEAQAPSVFTGF 501

Length = 817

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	451
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK04612	408	argD acetylornithine transaminase protein; Provisi	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
PLN00144	382	acetylornithine transaminase	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07046	453	aminotransferase; Validated	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
PLN02624	474	ornithine-delta-aminotransferase	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	100.0
PRK01278	389	argD acetylornithine transaminase protein; Provisi	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	100.0
PRK08297	443	L-lysine aminotransferase; Provisional	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	100.0
PRK02936	377	argD acetylornithine aminotransferase; Provisional	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
PRK03244	398	argD acetylornithine aminotransferase; Provisional	100.0
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	100.0
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	100.0
PRK02627	396	acetylornithine aminotransferase; Provisional	100.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	100.0
PTZ00125	400	ornithine aminotransferase-like protein; Provision	100.0
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	100.0
PRK04260	375	acetylornithine aminotransferase; Provisional	100.0
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	100.0
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	100.0
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	100.0
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	100.0
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	100.0
PRK07505	402	hypothetical protein; Provisional	100.0
PLN02822	481	serine palmitoyltransferase	100.0
PRK13393	406	5-aminolevulinate synthase; Provisional	100.0
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	100.0
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	100.0
PRK09064	407	5-aminolevulinate synthase; Validated	100.0
PLN02955	476	8-amino-7-oxononanoate synthase	100.0
PRK07179	407	hypothetical protein; Provisional	100.0
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	100.0
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	100.0
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	100.0
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	100.0
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.98
PRK13392	410	5-aminolevulinate synthase; Provisional	99.97
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.97
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.97
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.97
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.96
PLN02483	489	serine palmitoyltransferase	99.96
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.96
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.96
PRK06207	405	aspartate aminotransferase; Provisional	99.95
PRK06225	380	aspartate aminotransferase; Provisional	99.95
PRK07682	378	hypothetical protein; Validated	99.95
PRK07324	373	transaminase; Validated	99.95
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.95
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.94
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.94
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.94
PRK06108	382	aspartate aminotransferase; Provisional	99.94
PRK07681	399	aspartate aminotransferase; Provisional	99.94
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.94
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.94
PLN00175	413	aminotransferase family protein; Provisional	99.94
PRK08960	387	hypothetical protein; Provisional	99.94
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.94
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.93
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.93
PRK09148	405	aminotransferase; Validated	99.93
PLN02187	462	rooty/superroot1	99.93
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.93
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.93
PRK06290	410	aspartate aminotransferase; Provisional	99.93
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.93
PRK06107	402	aspartate aminotransferase; Provisional	99.93
PRK08068	389	transaminase; Reviewed	99.93
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.93
PRK06348	384	aspartate aminotransferase; Provisional	99.93
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.93
PRK05764	393	aspartate aminotransferase; Provisional	99.93
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.93
PRK06855	433	aminotransferase; Validated	99.93
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.93
PLN02656	409	tyrosine transaminase	99.93
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.93
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.93
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.92
PTZ00433	412	tyrosine aminotransferase; Provisional	99.92
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.92
PRK05957	389	aspartate aminotransferase; Provisional	99.92
PRK08361	391	aspartate aminotransferase; Provisional	99.92
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.92
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.92
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.92
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.92
PRK12414	384	putative aminotransferase; Provisional	99.92
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.92
PRK09105	370	putative aminotransferase; Provisional	99.92
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.92
PRK08363	398	alanine aminotransferase; Validated	99.92
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.92
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.92
PRK08636	403	aspartate aminotransferase; Provisional	99.92
PRK07550	386	hypothetical protein; Provisional	99.92
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.92
PRK05942	394	aspartate aminotransferase; Provisional	99.92
PRK08912	387	hypothetical protein; Provisional	99.92
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.92
PRK05839	374	hypothetical protein; Provisional	99.92
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.92
PRK07683	387	aminotransferase A; Validated	99.92
PRK07337	388	aminotransferase; Validated	99.92
PRK09082	386	methionine aminotransferase; Validated	99.92
PRK07777	387	aminotransferase; Validated	99.92
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.91
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.91
PRK08175	395	aminotransferase; Validated	99.91
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.91
PLN02721	353	threonine aldolase	99.91
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.91
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.91
PRK03321	352	putative aminotransferase; Provisional	99.91
PRK07568	397	aspartate aminotransferase; Provisional	99.91
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.91
PTZ00377	481	alanine aminotransferase; Provisional	99.91
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.9
PRK08354	311	putative aminotransferase; Provisional	99.9
PLN02672	1082	methionine S-methyltransferase	99.9
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.9
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.9
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.9
PRK09265	404	aminotransferase AlaT; Validated	99.9
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.9
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.9
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.9
PRK06836	394	aspartate aminotransferase; Provisional	99.9
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.89
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.89
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.89
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.89
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.89
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.89
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.89
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.88
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.88
PLN02231	534	alanine transaminase	99.88
PRK09275	527	aspartate aminotransferase; Provisional	99.88
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.88
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.88
PTZ00376	404	aspartate aminotransferase; Provisional	99.88
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.88
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.88
PRK10534	333	L-threonine aldolase; Provisional	99.88
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.87
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.87
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.87
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.87
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.87
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.86
PRK08637	388	hypothetical protein; Provisional	99.86
PRK07908	349	hypothetical protein; Provisional	99.86
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.86
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.85
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.85
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.84
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.84
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.84
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.84
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.83
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.83
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.83
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.82
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.82
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.82
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.82
PLN02368	407	alanine transaminase	99.82
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.82
PLN02397	423	aspartate transaminase	99.82
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.82
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.81
PRK02948	381	cysteine desulfurase; Provisional	99.81
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.81
PLN02242	418	methionine gamma-lyase	99.8
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.8
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.8
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.79
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.79
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.78
PRK08249	398	cystathionine gamma-synthase; Provisional	99.78
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.78
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.78
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.78
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.77
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.77
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.77
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.76
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.76
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.76
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.76
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.76
PRK06767	386	methionine gamma-lyase; Provisional	99.76
PRK07049	427	methionine gamma-lyase; Validated	99.75
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.75
PRK08045	386	cystathionine gamma-synthase; Provisional	99.75
PRK06234	400	methionine gamma-lyase; Provisional	99.75
PRK08776	405	cystathionine gamma-synthase; Provisional	99.75
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.75
PRK08861	388	cystathionine gamma-synthase; Provisional	99.75
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.75
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.75
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.75
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.74
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.74
PRK09028	394	cystathionine beta-lyase; Provisional	99.74
PRK06460	376	hypothetical protein; Provisional	99.74
PLN02409	401	serine--glyoxylate aminotransaminase	99.74
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.74
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.73
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.73
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.72
PRK14012	404	cysteine desulfurase; Provisional	99.72
PRK07050	394	cystathionine beta-lyase; Provisional	99.72
PRK08574	385	cystathionine gamma-synthase; Provisional	99.72
PRK07503	403	methionine gamma-lyase; Provisional	99.72
PLN02651	364	cysteine desulfurase	99.72
PRK05968	389	hypothetical protein; Provisional	99.71
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.71
PRK07582	366	cystathionine gamma-lyase; Validated	99.71
PRK07811	388	cystathionine gamma-synthase; Provisional	99.71
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.7
PLN02509	464	cystathionine beta-lyase	99.69
PRK05967	395	cystathionine beta-lyase; Provisional	99.69
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.69
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.68
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.68
PRK08064	390	cystathionine beta-lyase; Provisional	99.67
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.67
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.67
PRK08114	395	cystathionine beta-lyase; Provisional	99.67
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.66
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.65
PRK05939	397	hypothetical protein; Provisional	99.65
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.65
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.65
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.65
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.64
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.64
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.63
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.63
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.62
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.62
PRK07671	377	cystathionine beta-lyase; Provisional	99.62
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.61
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.6
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.59
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.57
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.57
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.57
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.56
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.54
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.53
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.53
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.51
PRK04311	464	selenocysteine synthase; Provisional	99.5
PLN03032	374	serine decarboxylase; Provisional	99.5
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.49
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.49
PRK06434	384	cystathionine gamma-lyase; Validated	99.49
PRK02769	380	histidine decarboxylase; Provisional	99.48
PRK12566	954	glycine dehydrogenase; Provisional	99.48
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.47
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.47
PRK03080	378	phosphoserine aminotransferase; Provisional	99.46
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.46
PRK05367	954	glycine dehydrogenase; Provisional	99.46
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.43
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.4
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.38
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.38
PRK13237	460	tyrosine phenol-lyase; Provisional	99.37
PLN02880	490	tyrosine decarboxylase	99.35
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.34
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.33
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.33
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.33
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.31
PLN02724	805	Molybdenum cofactor sulfurase	99.29
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.29
PLN02590	539	probable tyrosine decarboxylase	99.28
PLN02263	470	serine decarboxylase	99.27
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.25
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.21
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.2
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.18
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.17
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.09
PLN02271	586	serine hydroxymethyltransferase	99.02
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.97
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.95
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.95
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	98.86
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.84
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.77
PLN02452	365	phosphoserine transaminase	98.74
PRK15029	755	arginine decarboxylase; Provisional	98.74
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.71
PRK05367	954	glycine dehydrogenase; Provisional	98.65
PRK13578	720	ornithine decarboxylase; Provisional	98.62
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	98.62
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	98.58
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.57
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.57
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	98.51
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.48
PRK12462	364	phosphoserine aminotransferase; Provisional	98.4
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.38
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.32
PRK15400	714	lysine decarboxylase CadA; Provisional	98.32
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.31
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.18
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.09
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	97.83
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	97.78
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	97.78
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	97.75
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	97.73
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.67
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	97.58
PRK12566	954	glycine dehydrogenase; Provisional	97.55
COG4100	416	Cystathionine beta-lyase family protein involved i	97.28
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	97.23
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	96.99
KOG0629	510	consensus Glutamate decarboxylase and related prot	96.91
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	96.83
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	96.45
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	92.97
PRK05782	335	bifunctional sirohydrochlorin cobalt chelatase/pre	85.07

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=8.1e-86  Score=626.89  Aligned_cols=379  Identities=52%  Similarity=0.863  Sum_probs=358.3

Q ss_pred             chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 013008           61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI  140 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~  140 (451)
                      .+...++...++..+.|.+.|+++++|+|+|+||.+|++||||.+|+++++|||+||++++|+.+|++++.+.++.++++
T Consensus         5 ~~~~~~~~~~~~~~~~Y~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~   84 (404)
T COG4992           5 LTAATIELFMKYLMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNE   84 (404)
T ss_pred             cHHHHHHHHHHhhhcccCcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCCh
Confidence            45566777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          141 PQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       141 ~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      +..+|+++|++..+ .++|+|+|||+||||+|+|+||+|++  +    +.+.+||.|.++|||+|.+++++++.+.|+.+
T Consensus        85 ~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~--~----~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~  158 (404)
T COG4992          85 PQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTG--D----PEKSKIIAFENSFHGRTLGALSATGQPKYRKG  158 (404)
T ss_pred             HHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcC--C----CCCcEEEEEcCCcCCccceeeeccCChhhccC
Confidence            99999999999997 99999999999999999999999986  1    14779999999999999999999999999999


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                      |.|+.+++.++||||++++++++++ ++++||+||+||++|+++++++||+++++||++||++||+||||||+||||++|
T Consensus       159 F~Pl~~g~~~vpfnDi~al~~ai~~-~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~f  237 (404)
T COG4992         159 FGPLLPGFRHVPFNDIEALEAAIDE-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF  237 (404)
T ss_pred             CCCCCCCceecCCCCHHHHHHHhcc-CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHH
Confidence            9999999999999999999999987 899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------
Q 013008          300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------  370 (451)
Q Consensus       300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------  370 (451)
                      +++++|+.|||+|++|+||||+|+|++++++++.+.+.++.|++||+|||++|+++.++|+++.+++++++         
T Consensus       238 A~e~~gV~PDI~tlaK~LgGG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~  317 (404)
T COG4992         238 AYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLL  317 (404)
T ss_pred             HHHHhCCCCCEEEeeccccCCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888899999999999999999999999999999888877         


Q ss_pred             -----HHhCCCCcceecccceeEEEEecCC--hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          371 -----KLARNPHVKDVRGLGLIIGIEFDVS--ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       371 -----~~~~~~~~~~v~g~G~~~~~~~~~~--~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                           +..++|.+..+||+|+|+++++..+  +.++.+.|.++||++.+.+. +++||.||+.+++|++++++++|++++
T Consensus       318 ~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~~a~~~~~~~~~~gvL~~~a~~-~ViR~~PpL~i~~eei~~~~~~l~~~l  396 (404)
T COG4992         318 QRLRELKRRYPLVKEVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPAGP-NVIRFLPPLVITEEEIDEALDALERAL  396 (404)
T ss_pred             HHHHHHhhcCCceeeeecceeEEEEEecCcccHHHHHHHHHHCCeEEecCCC-CeEEecCCccCCHHHHHHHHHHHHHHH
Confidence                 4456778899999999999999654  78999999999999999887 899999999999999999999999999


Q ss_pred             HHHh
Q 013008          444 PVLD  447 (451)
Q Consensus       444 ~~~~  447 (451)
                      +...
T Consensus       397 ~~~~  400 (404)
T COG4992         397 AAAS  400 (404)
T ss_pred             HHhh
Confidence            8754

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-76  Score=579.83  Aligned_cols=377  Identities=44%  Similarity=0.748  Sum_probs=337.1

Q ss_pred             cchHHHHHHHHhcccccCCC--CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC
Q 013008           60 RNNKEVMEAEKKLLVGTYNR--APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY  137 (451)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~  137 (451)
                      +...+++++..++..++|..  +|+++++++|+||||+|||+||||.++.++.++||+||+|++|+.+|++++.+....+
T Consensus        16 ~~~~~~~~r~~~~~~r~~~~~~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~   95 (447)
T COG0160          16 PKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRD   95 (447)
T ss_pred             cchHHHHHHHHHHhccccccccCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCc
Confidence            35666777777777777766  7999999999999999999999999999999999999999999999999988664444


Q ss_pred             -CCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          138 -YSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       138 -~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                       ++++..+++++|.+..+   ..+++|++||+|||++|+|+||.+|+         +..||.|+++|||+|.+++++++.
T Consensus        96 ~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tg---------r~~viaf~~afHG~T~galslT~~  166 (447)
T COG0160          96 LYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTG---------RPGVIAFDGAFHGRTLGALSLTGS  166 (447)
T ss_pred             ccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhC---------CCcEEEECCcccccchhhHHhccC
Confidence             44889999999999886   57899999999999999999999995         889999999999999999999875


Q ss_pred             CCc-CCCCcCCCCCeeEeeCCC-----------------HHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHH
Q 013008          214 EHY-RSPFEPVMPGVNFVEYGN-----------------IEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       214 ~~~-~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      ... ...+.+..+++..+|+++                 .+.+++.+.     ..++|+||+||+||++|.+++|++||+
T Consensus       167 ~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~  246 (447)
T COG0160         167 KPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLK  246 (447)
T ss_pred             ccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHH
Confidence            543 345667777788887653                 344666443     457999999999999999999999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHH
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPL  350 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~  350 (451)
                      +|+++|+|||+++|+||||+||||||++|+++++|+.|||+|+||++++|+|+|+|++++++++ +.++.+.+||+|||+
T Consensus       247 ~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpv  325 (447)
T COG0160         247 ALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPV  325 (447)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cCCcccCCCCCcCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999 777889999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec----------CChHHHHHHHHHC
Q 013008          351 VCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD----------VSATPVVDACRDS  406 (451)
Q Consensus       351 ~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~----------~~~~~~~~~l~~~  406 (451)
                      +|+|++++|+.++++++.++              +.+++|.+.+|||.|+|+++++.          ....+++.+|+++
T Consensus       326 a~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~  405 (447)
T COG0160         326 ACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFER  405 (447)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHc
Confidence            99999999999988888777              56889999999999999999993          1145788999999


Q ss_pred             CceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          407 GLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       407 Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |+++..+|. ++++||.||+++++|++|+++++|+++++++
T Consensus       406 Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         406 GLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             CCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            999998874 6999999999999999999999999999864

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.9e-75  Score=527.57  Aligned_cols=382  Identities=37%  Similarity=0.592  Sum_probs=349.7

Q ss_pred             chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 013008           61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI  140 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~  140 (451)
                      .++..++++.++..++|+|+|+++.+++|+++||.+|++|+||.+++++.+.|||||.|.+|+.+|+++++..+..++++
T Consensus        22 aS~~~~~~E~k~~ahnyhpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssrafYnd  101 (427)
T KOG1402|consen   22 ASQQIMERENKYGAHNYHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRAFYND  101 (427)
T ss_pred             chhhhhchhhhcccccCCcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHHHhhh
Confidence            44557888889999999999999999999999999999999999999999999999999999999999988777778888


Q ss_pred             HHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC
Q 013008          141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF  220 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  220 (451)
                      ...++++.+.++++.+.|+.+|+|.||++.|++++|+|.......+ ..+.+|+...++|||.+.+++++++++.....|
T Consensus       102 ~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip-~nka~il~~~~nFhGrT~~ais~s~d~ds~~~f  180 (427)
T KOG1402|consen  102 VLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIP-KNKAKILSAENNFHGRTLGAISLSTDPDSWDGF  180 (427)
T ss_pred             hHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCC-ccceeEEEecccccCceeeeEEecCCcchhhcc
Confidence            8999999999999999999999999999999999997754333220 135678889999999999999999888766788


Q ss_pred             cCCCCC-eeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          221 EPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       221 ~~~~~~-~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                      .|..|+ +..+||+|+++|+.+++..+++++++||+||++|+++|+++||+++++||++|++++|.||||||+||+|+++
T Consensus       181 gp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~l  260 (427)
T KOG1402|consen  181 GPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLL  260 (427)
T ss_pred             CCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEE
Confidence            899999 7899999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------
Q 013008          300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------  370 (451)
Q Consensus       300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------  370 (451)
                      ++++.++.||++.|+|+|+|| +|++++++++++|..+.++.|++||++||++|+++.|+|+++.++++.++        
T Consensus       261 a~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l  340 (427)
T KOG1402|consen  261 ACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEIL  340 (427)
T ss_pred             EeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 99999999999999999999999999999999999999999999998888        


Q ss_pred             ------HHhCCC-CcceecccceeEEEEec------CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHH
Q 013008          371 ------KLARNP-HVKDVRGLGLIIGIEFD------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       371 ------~~~~~~-~~~~v~g~G~~~~~~~~------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~  437 (451)
                            +.+.+| .+..+||+|++.++.++      .+++++|-.|.++|++..|.+. +.+||.||++++++|+++.++
T Consensus       341 ~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~-~IiRfaPPL~I~e~dl~eg~e  419 (427)
T KOG1402|consen  341 RDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHG-NIIRFAPPLVISEEDLREGIE  419 (427)
T ss_pred             HHHHHhccccccchhheeeccceEEEEEeccccccchhHHHHHHcccccccccCCCCC-CeEEecCCcccCHHHHHHHHH
Confidence                  234455 46889999999999984      3467788888899999999875 899999999999999999999


Q ss_pred             HHHHHHH
Q 013008          438 ILCKTLP  444 (451)
Q Consensus       438 ~l~~~l~  444 (451)
                      +|.+++.
T Consensus       420 ~i~k~i~  426 (427)
T KOG1402|consen  420 AIEKTIA  426 (427)
T ss_pred             HHHHHhc
Confidence            9998874

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=1.1e-71  Score=535.54  Aligned_cols=382  Identities=26%  Similarity=0.391  Sum_probs=327.3

Q ss_pred             hhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHH
Q 013008           39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD  118 (451)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~  118 (451)
                      ...|.++ |++|++++|||+++++|.+.         .....|+++++++|+++||+|||+||||+.+|+++.|||+||.
T Consensus         4 ~~~S~~l-~~~A~~~~pGGvnspvra~~---------~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~   73 (432)
T COG0001           4 FPKSEAL-FERAKKVIPGGVNSPVRAFK---------SVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPA   73 (432)
T ss_pred             ccchHHH-HHHHhhhCCCCCCccccccC---------CCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHH
Confidence            4577888 99999999999999998764         1224799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 013008          119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT  197 (451)
Q Consensus       119 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~  197 (451)
                      |++|+++++++...  ...+++...++++.++++++ .|+|.|+||||||++.|||+||.||+         |++||.|+
T Consensus        74 V~~Av~~~l~~G~~--fg~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~Tg---------R~kIikF~  142 (432)
T COG0001          74 VVEAVQEQLERGLS--FGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTG---------RDKIIKFE  142 (432)
T ss_pred             HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhC---------CCeEEEEc
Confidence            99999999998643  45678889999999999998 59999999999999999999999995         99999999


Q ss_pred             CCccCChhhhhhccC--CCCcCCCCcCCCC--------CeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccC
Q 013008          198 NSFHGRTMGALALTS--KEHYRSPFEPVMP--------GVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSAT  265 (451)
Q Consensus       198 ~~yhg~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~  265 (451)
                      ++|||+.+..+.-.+  ......   |..+        .+..+||||+++++++++  .+++|+||+||+.+|.|+++|.
T Consensus       143 G~YHG~~D~~lv~agsg~~t~g~---p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~  219 (432)
T COG0001         143 GCYHGHSDSLLVKAGSGAATLGS---PSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPE  219 (432)
T ss_pred             CCCCCCccHHHhhcCcCcccCCC---CCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCC
Confidence            999999988876432  221111   2222        345889999999999998  4699999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC---Ccc
Q 013008          266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHG  342 (451)
Q Consensus       266 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~  342 (451)
                      ++||++|++||++||++||+|||+||| |.+.+++++++|++||++||||.+|||+|+|++.+++++|+.+.+.   .+.
T Consensus       220 ~~Fl~~Lr~lt~e~G~lLI~DEViTGF-R~~~gGaq~~~gi~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqa  298 (432)
T COG0001         220 PGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQA  298 (432)
T ss_pred             HHHHHHHHHHHHHcCcEEEEecchhhc-ccCCcccccccCcCcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCcccc
Confidence            999999999999999999999999999 8877889999999999999999999999999999999999988653   688


Q ss_pred             CCCCCcHHHHHHHHHHHHHhcC-hHHHHH--------------HHhCCCCcceecccceeEEEEecC-------------
Q 013008          343 STFAGSPLVCNAAIAVLDKISN-PAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV-------------  394 (451)
Q Consensus       343 ~t~~~~~~~~aaa~aal~~~~~-~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~-------------  394 (451)
                      +|+++||++++|++++|+.+.+ +..+++              ..+++..--.+...|.|+.+.|..             
T Consensus       299 GT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd  378 (432)
T COG0001         299 GTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSD  378 (432)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhc
Confidence            9999999999999999999876 344444              223333223467788888888731             


Q ss_pred             --ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          395 --SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       395 --~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                        ...++.+.|+++||++.|+..   -...++..||+|+||+++++++++++++..
T Consensus       379 ~~~~~~~~~~~l~~GV~l~ps~~---ea~flS~ahte~di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         379 VERFAKFFHHLLNRGVYLAPSQF---EAGFLSTAHTEEDIDRTLEAADEAFKELAG  431 (432)
T ss_pred             hHHHHHHHHHHHhCCcccCCccc---cceeeecccCHHHHHHHHHHHHHHHHHhhc
Confidence              134567789999999999864   244558899999999999999999988764

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=3.1e-71  Score=539.17  Aligned_cols=376  Identities=38%  Similarity=0.631  Sum_probs=329.0

Q ss_pred             HHhcccccCCC------CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHH
Q 013008           69 EKKLLVGTYNR------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSIP  141 (451)
Q Consensus        69 ~~~~~~~~~~~------~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~  141 (451)
                      +.++.+++|..      .|+++++++|.|+||.||++|||..|++|++++||+||+|.+|+.+|++++.+. ...+.+.+
T Consensus         9 d~~~~whP~t~~~~~~~~~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P   88 (449)
T COG0161           9 DLSHLWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEP   88 (449)
T ss_pred             hhhheeccccccccccccceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCch
Confidence            55666765542      278999999999999999999999999999999999999999999999998876 34455666


Q ss_pred             HHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcC-
Q 013008          142 QIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR-  217 (451)
Q Consensus       142 ~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~-  217 (451)
                      ..+|+++|++..+   .++|+|++||+|||+.|+|+++.|++.++.+   .|.++|....+|||.+.+++++++....+ 
T Consensus        89 a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p---~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~  165 (449)
T COG0161          89 AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQP---QRKKFISRRNGYHGDTLGAMSVGGPVALRH  165 (449)
T ss_pred             HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCC---cceEEEEeccCcCcccchheeccCchhhhh
Confidence            9999999999997   8899999999999999999999999988876   58889999999999999999999843333 


Q ss_pred             CCCcCCCCCeeEeeCC-----------------CHHHHHHhcC---CCCeEEEEEccccCC-CCccccCHHHHHHHHHHH
Q 013008          218 SPFEPVMPGVNFVEYG-----------------NIEATRKLIQ---PGKTAAVFVEPIQGE-GGIYSATKEFLQFLRDAC  276 (451)
Q Consensus       218 ~~~~~~~~~~~~~~~~-----------------d~~~le~~l~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~  276 (451)
                      ..+.++.+++.++|.+                 ++++||++|.   +++++|||+||+.+. +|+++|+++||+++++||
T Consensus       166 ~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC  245 (449)
T COG0161         166 AFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREIC  245 (449)
T ss_pred             hhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHH
Confidence            4444555555444332                 2567888886   378999999998777 999999999999999999


Q ss_pred             HHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC-----CccCCCCCcHH
Q 013008          277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPL  350 (451)
Q Consensus       277 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~  350 (451)
                      ++||++||+|||.|||||||++|+++++|++|||+|++|+|++| +|+|+++++++|.+.+...     .|++||++||+
T Consensus       246 ~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPl  325 (449)
T COG0161         246 DKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPL  325 (449)
T ss_pred             HHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHH
Confidence            99999999999999999999999999999999999999999999 8999999999999988653     68999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHH-----------H---HhCCCCcceecccceeEEEEec--CC---------hHHHHHHHHH
Q 013008          351 VCNAAIAVLDKISNPAFLAS-----------K---LARNPHVKDVRGLGLIIGIEFD--VS---------ATPVVDACRD  405 (451)
Q Consensus       351 ~~aaa~aal~~~~~~~~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~--~~---------~~~~~~~l~~  405 (451)
                      +||||++.|++++++++.++           +   +..+|.+.++|+.|++.++++.  ..         ...+.+.+++
T Consensus       326 acAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e  405 (449)
T COG0161         326 ACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALE  405 (449)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHH
Confidence            99999999999999998887           2   3456799999999999999992  22         4578888999


Q ss_pred             CCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008          406 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN  449 (451)
Q Consensus       406 ~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~  449 (451)
                      +|++++|.+  +.+.++||+++|+|||+++++++.+++++....
T Consensus       406 ~Gl~iRp~g--~~i~~~PPliit~~eid~l~~~l~~al~~~~~~  447 (449)
T COG0161         406 RGLLIRPLG--DVIYLMPPLIITREEIDELVDALREALDETLAD  447 (449)
T ss_pred             CCeEEeecC--CEEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            999999984  689999999999999999999999999876543

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=2e-69  Score=548.45  Aligned_cols=368  Identities=32%  Similarity=0.523  Sum_probs=318.1

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC--C
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~--~  155 (451)
                      .|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|++++.+...  .+.+++..+|+++|++..+  .
T Consensus        28 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~  107 (459)
T PRK05965         28 GVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSL  107 (459)
T ss_pred             CCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCc
Confidence            37899999999999999999999999999999999999999999999998765433  3457778999999999885  6


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC---
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---  232 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  232 (451)
                      ++|+|++||+||++.|+|+||.|++.++.+   +|.+||.++++|||++.+++++++.+.++..+.+..+++..+++   
T Consensus       108 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~---~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~  184 (459)
T PRK05965        108 NHVYFTLGGSDAVDSAVRFIRHYWNATGRP---SKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYP  184 (459)
T ss_pred             CEEEEeCChhHHHHHHHHHHHHHHHhcCCC---CccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcc
Confidence            899999999999999999999997654422   47899999999999999988888766555555554455444432   


Q ss_pred             ------CC--------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008          233 ------GN--------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT  295 (451)
Q Consensus       233 ------~d--------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~  295 (451)
                            +|        +++++++++   .+++++||+||+++++|+++++++||++|+++|++||++||+|||+|||||+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRt  264 (459)
T PRK05965        185 YRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRT  264 (459)
T ss_pred             cccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccC
Confidence                  23        257788885   3689999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC-------CCccCCCCCcHHHHHHHHHHHHHhcChHH
Q 013008          296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPAF  367 (451)
Q Consensus       296 G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~aaa~aal~~~~~~~~  367 (451)
                      |++|+++++|+.|||+|+||+|+|| +|+|++++++++++.+..       ..+++||++||++|+|++++|++++++++
T Consensus       265 G~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l  344 (459)
T PRK05965        265 GPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGL  344 (459)
T ss_pred             chhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccH
Confidence            9999999999999999999999999 599999999999988753       25789999999999999999999988877


Q ss_pred             HHH-----------H--HhCCCCcceecccceeEEEEecC-------------ChHHHHHHHHHCCceeeecCCCCEEEE
Q 013008          368 LAS-----------K--LARNPHVKDVRGLGLIIGIEFDV-------------SATPVVDACRDSGLLVLTAGKGNVVRL  421 (451)
Q Consensus       368 ~~~-----------~--~~~~~~~~~v~g~G~~~~~~~~~-------------~~~~~~~~l~~~Gv~~~~~~~~~~iri  421 (451)
                      .++           +  +.++|.+.++||.|+|+++++..             ....+.+.|+++||++.+.+. +++|+
T Consensus       345 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~-~~i~~  423 (459)
T PRK05965        345 LANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFGD-GVLGF  423 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecCC-cEEEE
Confidence            766           1  13467888999999999999821             134577888999999988765 78999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 013008          422 VPPLIISEQELDQAVEILCKTLPVLDSNSN  451 (451)
Q Consensus       422 ~~~~~~t~e~i~~~l~~l~~~l~~~~~~~~  451 (451)
                      .||+++|++||++++++|+++++++.++|+
T Consensus       424 ~PpL~it~~ei~~~~~~l~~~l~~~~~~~~  453 (459)
T PRK05965        424 APALCCTEGEFDLIFERTRKTLDDVLADPD  453 (459)
T ss_pred             ECCCcCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999877764

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=3.2e-69  Score=547.17  Aligned_cols=364  Identities=27%  Similarity=0.478  Sum_probs=316.4

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC--C
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~--~  155 (451)
                      .|+++++++|+||||.|||+||||.+++++.++||+||+|.+|+.+|++++.+..  ..+.+++..+|+++|++..+  .
T Consensus        32 ~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~  111 (461)
T PRK07482         32 PGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGM  111 (461)
T ss_pred             CCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCc
Confidence            3789999999999999999999999999999999999999999999999875432  24567889999999999885  6


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC--
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--  233 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  233 (451)
                      ++|+|++||+||++.|+|+||.|+..++..   +|.+||.++++|||++.+++++++...++..+.|..+++..++++  
T Consensus       112 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~---~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~  188 (461)
T PRK07482        112 SKVYYGLSGSDANETQIKLVWYYNNVLGRP---EKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHY  188 (461)
T ss_pred             CEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCcc
Confidence            899999999999999999999997544322   478999999999999999999888766666666666665544322  


Q ss_pred             ----------------CHHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008          234 ----------------NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR  294 (451)
Q Consensus       234 ----------------d~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  294 (451)
                                      ++++|++++.   ++++++||+||+++++|+++++++|+++|+++|++||++||+|||+|||||
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGR  268 (461)
T PRK07482        189 YRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGR  268 (461)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Confidence                            3578888884   367999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCcceeeecccccCCc-ccccccccHHHHhhccC-------CCccCCCCCcHHHHHHHHHHHHHhcChH
Q 013008          295 TGYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPA  366 (451)
Q Consensus       295 ~G~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~aaa~aal~~~~~~~  366 (451)
                      +|++|+++++|+.||++|+||+++||+ |+|++++++++++.+..       ..|++||++||++|+|++++|+++++++
T Consensus       269 tG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~  348 (461)
T PRK07482        269 LGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILEREN  348 (461)
T ss_pred             CcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999995 99999999999987752       2478999999999999999999998877


Q ss_pred             HHHH--------------HHhCCCCcceecccceeEEEEecC--C-----------hHHHHHHHHHCCceeeecCCCCEE
Q 013008          367 FLAS--------------KLARNPHVKDVRGLGLIIGIEFDV--S-----------ATPVVDACRDSGLLVLTAGKGNVV  419 (451)
Q Consensus       367 ~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~--~-----------~~~~~~~l~~~Gv~~~~~~~~~~i  419 (451)
                      +.++              +.+++|.+.++||.|+|+++++..  .           ...++..|+++||++.+...++++
T Consensus       349 l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i  428 (461)
T PRK07482        349 LVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDIL  428 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCCCCEE
Confidence            7666              345678889999999999999931  0           246788899999998654224789


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          420 RLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       420 ri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |+.||+++|++||++++++|+++++++
T Consensus       429 ~~~Ppl~it~~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        429 GFAPPLVLTRAEADEIVAIAKDAVDEV  455 (461)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999876

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=1.5e-68  Score=541.46  Aligned_cols=384  Identities=33%  Similarity=0.582  Sum_probs=324.5

Q ss_pred             chHHHHHHHHhccccc---CCC-CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC
Q 013008           61 NNKEVMEAEKKLLVGT---YNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM  136 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~---~~~-~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~  136 (451)
                      ++.++++++.++.++.   +.+ .|+++++++|+|+||.|||+||||.+++++.+|||+||+|.+|+.+|++++.+....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~   85 (451)
T PRK07678          6 QTDELLAKDEQYVWHGMKPYNPNATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLT   85 (451)
T ss_pred             CHHHHHHHhhcccCCCccccccCCCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccccc
Confidence            3444444444444333   222 389999999999999999999999999999999999999999999999987655444


Q ss_pred             CCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008          137 YYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH  215 (451)
Q Consensus       137 ~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~  215 (451)
                      +.++...+|+++|++..+ .++++|++||+||++.|+|+||.||+.++.+   +|.+||.++++|||++.+++++++...
T Consensus        86 ~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~---~r~~ii~~~~~yHG~t~~als~~~~~~  162 (451)
T PRK07678         86 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEP---HRYKFISRYRAYHGNSMGALAATGQAQ  162 (451)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCccHHHhhcCCCcc
Confidence            567789999999999886 5699999999999999999999998654432   478999999999999999999887766


Q ss_pred             cCCCCcCCCCCeeEeeCCC-----------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHH
Q 013008          216 YRSPFEPVMPGVNFVEYGN-----------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA  275 (451)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l  275 (451)
                      ++..+.|..+++..+|+++                 ++.++++++   ++++++||+||+++++|+++|+++||++|+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~l  242 (451)
T PRK07678        163 RKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEI  242 (451)
T ss_pred             cccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHH
Confidence            6666667667776655432                 233666774   46899999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC------CccCCCCCc
Q 013008          276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGSTFAGS  348 (451)
Q Consensus       276 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~t~~~~  348 (451)
                      |++||++||+|||+|||||+|++|+++++|+.||++|+||+++|| +|+|++++++++++.+...      .|++||++|
T Consensus       243 c~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gn  322 (451)
T PRK07678        243 CQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGN  322 (451)
T ss_pred             HHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcC
Confidence            999999999999999999999999999999999999999999999 7999999999999988532      478999999


Q ss_pred             HHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC-----------ChHHHHHHH
Q 013008          349 PLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV-----------SATPVVDAC  403 (451)
Q Consensus       349 ~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~-----------~~~~~~~~l  403 (451)
                      |++|+|++++|++++++++.++              ++++++.+..++|.|+|+++++..           ...++...|
T Consensus       323 p~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l  402 (451)
T PRK07678        323 PAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAAC  402 (451)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHH
Confidence            9999999999999988776655              235577888999999999999821           135678889


Q ss_pred             HHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          404 RDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       404 ~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +++||++.+.+.     ++++||+||+++|++|||+++++|++++++++
T Consensus       403 ~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~  451 (451)
T PRK07678        403 KEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK  451 (451)
T ss_pred             HHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence            999999976531     37899999999999999999999999998764

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=3.1e-68  Score=538.05  Aligned_cols=366  Identities=35%  Similarity=0.570  Sum_probs=327.7

Q ss_pred             CCCCceEEEeecc-cEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-
Q 013008           77 YNRAPVVLASGKG-CKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-  154 (451)
Q Consensus        77 ~~~~p~~~~~~~G-~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-  154 (451)
                      +.+.|+++.+++| +||||.||++||||.+++++.++||+||+|.+|+.+|++++.+.+..+.++...+|+++|++..+ 
T Consensus        60 ~~~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~  139 (459)
T PRK11522         60 GGDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPG  139 (459)
T ss_pred             cCCCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCC
Confidence            3466889999999 99999999999999999999999999999999999999987665555668889999999999875 


Q ss_pred             -CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC
Q 013008          155 -ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG  233 (451)
Q Consensus       155 -~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (451)
                       .++++|++||+|||+.|+|+||.||+.+      +|.+||.++++|||++.++++.++...++.++.|..+++..+|+|
T Consensus       140 ~~~~v~f~~SGsEAve~AlklAr~~t~~~------gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~  213 (459)
T PRK11522        140 KLKYSFFCNSGTESVEAALKLAKAYQSPR------GKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFG  213 (459)
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHHhccC------CCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCC
Confidence             6799999999999999999999998532      266899999999999999999988777777777888889999999


Q ss_pred             CHHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCc
Q 013008          234 NIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP  308 (451)
Q Consensus       234 d~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p  308 (451)
                      |+++++++++     .+++++||+||+++++|+++|+++||++|+++|++||+++|+|||||||||+|.+|+++++|+.|
T Consensus       214 d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~P  293 (459)
T PRK11522        214 NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQP  293 (459)
T ss_pred             CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCC
Confidence            9999999885     25799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecccccCC-cccccccccHHHHhhcc--CCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------H
Q 013008          309 DIMTLAKPLAGG-LPIGAALVTEKVASAIN--YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------K  371 (451)
Q Consensus       309 di~t~sK~lg~G-~~iG~v~~~~~i~~~~~--~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~  371 (451)
                      |++|+||++||| +|+|++++++++++.+.  +..+++||++||++|+|++++|++++++++.++              +
T Consensus       294 Divt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l  373 (459)
T PRK11522        294 DILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQL  373 (459)
T ss_pred             CEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 79999999999998874  346889999999999999999999988877766              3


Q ss_pred             HhCCC-CcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          372 LARNP-HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       372 ~~~~~-~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+++| .+.+++|.|+|+++++..  ....+.+.|+++||++.+.+. ++++||.||+++|++||++++++|+++++++.
T Consensus       374 ~~~~~~~i~~VrG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~  453 (459)
T PRK11522        374 AREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMR  453 (459)
T ss_pred             HHhCCCceeeEEeceeEEEEEecCchHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence            34677 678999999999999943  356788999999999987632 37899999999999999999999999998875


Q ss_pred             h
Q 013008          448 S  448 (451)
Q Consensus       448 ~  448 (451)
                      .
T Consensus       454 ~  454 (459)
T PRK11522        454 V  454 (459)
T ss_pred             H
Confidence            3

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=7.2e-68  Score=535.65  Aligned_cols=363  Identities=33%  Similarity=0.548  Sum_probs=317.8

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--CC
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--AD  156 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~e  156 (451)
                      .|+++++++|++|||.||++||||.+++++.+|||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+  .+
T Consensus        36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~  115 (453)
T PRK06943         36 PLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLG  115 (453)
T ss_pred             CCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence            47899999999999999999999999999999999999999999999998765433 4567789999999999886  57


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCC--
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN--  234 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--  234 (451)
                      +|+|++||+||++.|+|+|+.|+..++..   +|.+||.++++|||++.+++++++...++..|.|..+++.++++++  
T Consensus       116 ~v~f~~sGseAve~AlKlA~~~~~~rg~~---~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~  192 (453)
T PRK06943        116 HAFFASDGASAVEIALKMSFHAWRNRGRG---DKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDAR  192 (453)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHHhCCC---CCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCcc
Confidence            99999999999999999999887544332   4789999999999999999999987766766767666665555433  


Q ss_pred             ---------------HHHHHHhcC--CCCeEEEEEcc-ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc
Q 013008          235 ---------------IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG  296 (451)
Q Consensus       235 ---------------~~~le~~l~--~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G  296 (451)
                                     +++++++++  .+++++||+|| +++++|+++++++||++|+++|++||++||+|||+|||||+|
T Consensus       193 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG  272 (453)
T PRK06943        193 GARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG  272 (453)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCc
Confidence                           577888885  46899999999 599999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC------CccCCCCCcHHHHHHHHHHHHHhcChHHHH
Q 013008          297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGSTFAGSPLVCNAAIAVLDKISNPAFLA  369 (451)
Q Consensus       297 ~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  369 (451)
                      ++|+++++|+.||++|+||+++|| +|+|++++++++++.+...      .+++||++||++|++++++|++++++++++
T Consensus       273 ~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~  352 (453)
T PRK06943        273 TFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLA  352 (453)
T ss_pred             chhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            999999999999999999999999 6999999999999987531      478899999999999999999998887766


Q ss_pred             H-----------H--HhCCCCcceecccceeEEEEecC--C-----hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCH
Q 013008          370 S-----------K--LARNPHVKDVRGLGLIIGIEFDV--S-----ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISE  429 (451)
Q Consensus       370 ~-----------~--~~~~~~~~~v~g~G~~~~~~~~~--~-----~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~  429 (451)
                      +           +  +.+++.+.++||.|+|+++++..  .     ..++.+.|+++||++.+.+  +.+||+||+++|+
T Consensus       353 ~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~g--~~l~~~Ppl~it~  430 (453)
T PRK06943        353 RNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPIG--TTVYLMPPYVLDD  430 (453)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEecC--CEEEEeCCCcCCH
Confidence            6           1  13467788999999999999941  1     3467888999999998764  5799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 013008          430 QELDQAVEILCKTLPVLD  447 (451)
Q Consensus       430 e~i~~~l~~l~~~l~~~~  447 (451)
                      +|||+++++|+++++++-
T Consensus       431 ~eid~~~~~l~~al~~~~  448 (453)
T PRK06943        431 DEIAWLAERTRATLDATL  448 (453)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998864

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.4e-67  Score=534.46  Aligned_cols=361  Identities=31%  Similarity=0.558  Sum_probs=315.9

Q ss_pred             ceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC-----
Q 013008           81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF-----  154 (451)
Q Consensus        81 p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-----  154 (451)
                      |+.+++++|+||||.||++||||.+++++.++||+||+|.+|+.+|++++.+.+. .+.+++..+|+++|++..+     
T Consensus        47 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~  126 (472)
T PRK08742         47 LVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGR  126 (472)
T ss_pred             CeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccC
Confidence            4678999999999999999999999999999999999999999999988765433 3567789999999999875     


Q ss_pred             --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       155 --~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                        .++|+|++||+|||+.|+|+||.|+..++..   +|.+||.++++|||++.+++++++.+.++..+.|..+++.++|+
T Consensus       127 ~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~---~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~  203 (472)
T PRK08742        127 APLSKVFYADNGSAGVEVALKMAFHYFHNRGEH---RRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPS  203 (472)
T ss_pred             CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCC
Confidence              3699999999999999999999997654432   47899999999999999999998876666667777677777766


Q ss_pred             CC-----------------HHHHHHhcC--CCCeEEEEEcc-ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          233 GN-----------------IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       233 ~d-----------------~~~le~~l~--~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                      ++                 ++.++++++  .+++++||+|| +++++|+++++++||++|+++|++||++||+|||+|||
T Consensus       204 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGf  283 (472)
T PRK08742        204 PDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGF  283 (472)
T ss_pred             CCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence            43                 466777775  46899999999 69999999999999999999999999999999999999


Q ss_pred             CcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC------CCccCCCCCcHHHHHHHHHHHHHhcCh
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGSPLVCNAAIAVLDKISNP  365 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~  365 (451)
                      ||+|++|+++++|+.||++|+||+++|| +|+|++++++++++.+..      ..|++||++||++|+|++++|++++++
T Consensus       284 GRtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~  363 (472)
T PRK08742        284 GRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADD  363 (472)
T ss_pred             CCCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999 599999999999988742      247899999999999999999999888


Q ss_pred             HHHHH-------------HHhCCCCcceecccceeEEEEecC--C-----------hHHHHHHHHHCCceeeecCCCCEE
Q 013008          366 AFLAS-------------KLARNPHVKDVRGLGLIIGIEFDV--S-----------ATPVVDACRDSGLLVLTAGKGNVV  419 (451)
Q Consensus       366 ~~~~~-------------~~~~~~~~~~v~g~G~~~~~~~~~--~-----------~~~~~~~l~~~Gv~~~~~~~~~~i  419 (451)
                      ++.++             .++++|.+.++||.|+++++++..  .           ...+.+.|+++||++.+.+  +++
T Consensus       364 ~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g--~vi  441 (472)
T PRK08742        364 DVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLG--DVL  441 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecC--CEE
Confidence            77665             234578889999999999999931  1           1457788899999998864  789


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          420 RLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       420 ri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ||.||+++|++||++++++|+++++++
T Consensus       442 ~~~PpL~it~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        442 YWMPPYCVDEAQLALLADTTRHAIDEA  468 (472)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999875

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-68  Score=496.89  Aligned_cols=354  Identities=37%  Similarity=0.646  Sum_probs=312.5

Q ss_pred             CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--
Q 013008           77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--  154 (451)
Q Consensus        77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--  154 (451)
                      +...|+++++++|.||+|.+|++|+|+.+|..+..+|||||+|.+|+.+|+..+.|.+..+.+++..+|+++|.+.++  
T Consensus        29 ~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P~~  108 (442)
T KOG1404|consen   29 YYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYLNPPIHDLAEALVSKLPGD  108 (442)
T ss_pred             cccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeeccccCCcHHHHHHHHHHhCCCC
Confidence            345699999999999999999999999999999999999999999999999988888778888899999999999986  


Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCee------
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN------  228 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~------  228 (451)
                      ...++|+|||+|||++|+++++.||+         .-+||.+..+|||.+..++++++...++..+....+++.      
T Consensus       109 l~~vfF~nsGsEANelal~mar~Yt~---------~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pd  179 (442)
T KOG1404|consen  109 LKVVFFVNSGSEANELALKMARLYTG---------NLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPD  179 (442)
T ss_pred             ceEEEEecCCchHHHHHHHHHHHhcC---------CceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCC
Confidence            77999999999999999999999996         678999999999999999999987766654432222332      


Q ss_pred             --EeeCCC----------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          229 --FVEYGN----------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       229 --~~~~~d----------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                        .-++.+          .+.|++.+.   ++++|++|+||++|.+|++.++++||+++.++|+++|.++|.||||||||
T Consensus       180 p~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfG  259 (442)
T KOG1404|consen  180 PYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFG  259 (442)
T ss_pred             cccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccc
Confidence              222221          355666665   56799999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcChHHHHH--
Q 013008          294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLAS--  370 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--  370 (451)
                      |+|.+|+++..++.|||+|++|++|+|+|+|+|+.++||++.+.+.. +..||++||++|++++++|++++++++.++  
T Consensus       260 RtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa  339 (442)
T KOG1404|consen  260 RTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAA  339 (442)
T ss_pred             cccccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999997655 889999999999999999999999988877  


Q ss_pred             ------------HHhCCCCcceecccceeEEEEe-c-C---------ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCC
Q 013008          371 ------------KLARNPHVKDVRGLGLIIGIEF-D-V---------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLI  426 (451)
Q Consensus       371 ------------~~~~~~~~~~v~g~G~~~~~~~-~-~---------~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~  426 (451)
                                  +.+++|.+.++||+|+|+++++ + .         ....+.+.|.+.|+++.-++- |+++||.||++
T Consensus       340 ~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlc  419 (442)
T KOG1404|consen  340 EVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLC  419 (442)
T ss_pred             HHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCee
Confidence                        4578899999999999999998 2 1         124578899999999976653 78999999999


Q ss_pred             CCHHHHHHHHHHH
Q 013008          427 ISEQELDQAVEIL  439 (451)
Q Consensus       427 ~t~e~i~~~l~~l  439 (451)
                      +|+||++.+++..
T Consensus       420 iT~edi~f~~~~~  432 (442)
T KOG1404|consen  420 ITKEDIDFAVEYF  432 (442)
T ss_pred             ccHHHHHHHHHHH
Confidence            9999998887766

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=4.9e-68  Score=533.00  Aligned_cols=357  Identities=36%  Similarity=0.592  Sum_probs=316.9

Q ss_pred             ceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeE
Q 013008           81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRV  158 (451)
Q Consensus        81 p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v  158 (451)
                      ++++++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|++++.+.+....++...+|+++|++..+  .+++
T Consensus        58 ~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v  137 (442)
T TIGR03372        58 AVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYS  137 (442)
T ss_pred             eeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEE
Confidence            44556777799999999999999999999999999999999999999987665555667889999999999886  5789


Q ss_pred             EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHH
Q 013008          159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT  238 (451)
Q Consensus       159 ~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l  238 (451)
                      +|++||+|||+.|+|+||.||..+      ++.+||.++++|||++.+++++++.+.++..+.|..+++..+|++|++.+
T Consensus       138 ~f~~SGsEA~e~AlklAr~~t~~~------gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~  211 (442)
T TIGR03372       138 FFCNSGTESVEAALKLAKAYQSPR------GKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAM  211 (442)
T ss_pred             EEeCCchHHHHHHHHHHHHHHhhc------CCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHH
Confidence            999999999999999999997421      37789999999999999999998876666677788889999999999998


Q ss_pred             HHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee
Q 013008          239 RKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL  313 (451)
Q Consensus       239 e~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~  313 (451)
                      ++.++     .+++++||+||+++++|+++|+++||++|+++|++||+++|+|||||||||+|.+|+++++|+.||++|+
T Consensus       212 ~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~  291 (442)
T TIGR03372       212 LKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCL  291 (442)
T ss_pred             HHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeee
Confidence            88774     3579999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCC-cccccccccHHHHhhcc--CCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCC
Q 013008          314 AKPLAGG-LPIGAALVTEKVASAIN--YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNP  376 (451)
Q Consensus       314 sK~lg~G-~~iG~v~~~~~i~~~~~--~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~  376 (451)
                      ||++++| +|+|++++++++++.+.  +..+++||++||++|+|++++|++++++++.++              +.+++|
T Consensus       292 gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~  371 (442)
T TIGR03372       292 AKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYP  371 (442)
T ss_pred             hhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999 79999999999999883  346789999999999999999999987776654              335677


Q ss_pred             -CcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          377 -HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       377 -~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                       .+.++||.|+|+++++..  ....+++.|+++||++.+.+. ++++||.||+++|++|+|+++++|++++
T Consensus       372 ~~i~~vRG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       372 DLIIEARGKGLLMAIEFRDNEIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             CceEEEecceEEEEEEeCChHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence             678999999999999943  356789999999999986533 3789999999999999999999999864

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-67  Score=533.59  Aligned_cols=373  Identities=32%  Similarity=0.541  Sum_probs=317.5

Q ss_pred             HHHHHHHhc--ccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccCCCCC
Q 013008           64 EVMEAEKKL--LVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNMYYS  139 (451)
Q Consensus        64 ~~~~~~~~~--~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~  139 (451)
                      +++++..++  ..+.|. +.|+++++++|+||||.||++||||.+++++.++||+||+|.+|+.+|+++.. +....+.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~  105 (464)
T PRK06938         26 PLLERQSRRESNARSYPRRIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTT  105 (464)
T ss_pred             HHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccCC
Confidence            444443322  334442 57899999999999999999999999999999999999999999999997533 22224567


Q ss_pred             HHHHHHHHHHhhccCC-----CeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          140 IPQIELAKRLVACSFA-----DRVFFS-NTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~~-----e~v~~~-~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +...+|+++|.+..+.     ++++|+ +||+||++.|+|+||.+|+         |.+||.++++|||++.+++++++.
T Consensus       106 ~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tg---------r~~ii~~~~~yHG~t~~als~t~~  176 (464)
T PRK06938        106 PVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATG---------RSTVLSFQGGYHGMSQGALSLMGN  176 (464)
T ss_pred             HHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhC---------CCeEEEECCccCCccHHHHhhcCC
Confidence            7789999999988752     367776 7999999999999999874         889999999999999999998876


Q ss_pred             CCcCCCCcCCCCCeeEeeCC-----------------CHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHH
Q 013008          214 EHYRSPFEPVMPGVNFVEYG-----------------NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQF  271 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~-----------------d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~  271 (451)
                      ..++..+.+..+++.++|++                 +++.++++++.     +++++||+||+++++|.++|+++||++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~  256 (464)
T PRK06938        177 LGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRG  256 (464)
T ss_pred             ccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHH
Confidence            55555566666666666543                 25778888862     369999999999999999999999999


Q ss_pred             HHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHH
Q 013008          272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLV  351 (451)
Q Consensus       272 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~  351 (451)
                      |+++|++||++||+|||+|||||+|++|+++++|+.||++|+||+++||+|+|++++++++ +.+....+++||++||++
T Consensus       257 lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla  335 (464)
T PRK06938        257 LRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMA  335 (464)
T ss_pred             HHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCCCceEEEeehhHh-hccCCCCCCCCCCcCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999885 777666789999999999


Q ss_pred             HHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC----------------hHHHHH
Q 013008          352 CNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS----------------ATPVVD  401 (451)
Q Consensus       352 ~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~----------------~~~~~~  401 (451)
                      |+|++++|++++++++.++              +.+++|.+.++||.|+|++++|..+                ...+..
T Consensus       336 ~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (464)
T PRK06938        336 MAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQR  415 (464)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHH
Confidence            9999999999988877766              4456888999999999999999311                245778


Q ss_pred             HHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          402 ACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       402 ~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .|+++|+++.+.+. ++++||.||+++|++|++++++++++++.++
T Consensus       416 ~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        416 ECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             HHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            88999999987653 5899999999999999999999999999865

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-67  Score=532.50  Aligned_cols=370  Identities=36%  Similarity=0.609  Sum_probs=318.3

Q ss_pred             cCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC
Q 013008           76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF  154 (451)
Q Consensus        76 ~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~  154 (451)
                      .+...|+++++++|+||||.||++||||.+++++.++||+||+|.+|+++|++++.+... .+.++...+|+++|++..+
T Consensus         8 ~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p   87 (443)
T PRK07483          8 SPRATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAP   87 (443)
T ss_pred             cccCCCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC
Confidence            344579999999999999999999999999999999999999999999999998654322 3567778999999999875


Q ss_pred             --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       155 --~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                        .++++|++||+||++.|+|+||.|+..++.+   +|.+||.++++|||++.+++++++...++..+.|..+++..+++
T Consensus        88 ~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~---~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~  164 (443)
T PRK07483         88 AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQP---QRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSP  164 (443)
T ss_pred             CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCC
Confidence              6899999999999999999999996544322   47889999999999999999998776666566666666655542


Q ss_pred             ----CC--------------HHHHHHhcC---CCCeEEEEEccccC-CCCccccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008          233 ----GN--------------IEATRKLIQ---PGKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLVFDEVQC  290 (451)
Q Consensus       233 ----~d--------------~~~le~~l~---~~~~aavi~ep~~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  290 (451)
                          ++              ++++++++.   .+++++||+||+++ ++|.++++++||++|+++|++||++||+|||+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t  244 (443)
T PRK07483        165 CYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC  244 (443)
T ss_pred             CccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee
Confidence                33              256777664   46899999999998 579999999999999999999999999999999


Q ss_pred             CCCcccccccccccCCCcceeeecccccCCc-ccccccccHHHHhhccCC----CccCCCCCcHHHHHHHHHHHHHhcCh
Q 013008          291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNP  365 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~~~  365 (451)
                      ||||+|++|+++++++.|||+|+||+++||+ |+|++++++++++.+...    .|++||++||++|++++++|++++++
T Consensus       245 GfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~  324 (443)
T PRK07483        245 GMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAED  324 (443)
T ss_pred             CcccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999995 999999999999988542    47899999999999999999999887


Q ss_pred             HHHHH--------------HHhCCCCcceecccceeEEEEecC-------------ChHHHHHHHHHCCceeeecCC---
Q 013008          366 AFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV-------------SATPVVDACRDSGLLVLTAGK---  415 (451)
Q Consensus       366 ~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~-------------~~~~~~~~l~~~Gv~~~~~~~---  415 (451)
                      ++.++              +++++|.+.++||.|+|+++++..             ....+.+.|+++|+++.+.+.   
T Consensus       325 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~  404 (443)
T PRK07483        325 GLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTID  404 (443)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCcccc
Confidence            77666              345678888999999999999831             124678889999999987531   


Q ss_pred             ---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          416 ---GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       416 ---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                         ++++||.||+++|++|||+++++|+++++++..
T Consensus       405 ~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~  440 (443)
T PRK07483        405 GVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA  440 (443)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence               478999999999999999999999999987653

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-67  Score=531.06  Aligned_cols=363  Identities=34%  Similarity=0.609  Sum_probs=314.0

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC---
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF---  154 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~---  154 (451)
                      .|+++++++|+||||.||++||||.+++++.+|||+||+|.+|+.+|++++.+.+.  .+.++...+|+++|++..+   
T Consensus        24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~  103 (449)
T PRK07481         24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG  103 (449)
T ss_pred             CCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC
Confidence            58999999999999999999999999999999999999999999999998765432  3567889999999999873   


Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee---
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE---  231 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  231 (451)
                      .++++|++||+||++.|+|+||.|++..+.+   +|.+||.++++|||++.+++++++...++..+.|..+++..++   
T Consensus       104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~  180 (449)
T PRK07481        104 MRRVFFSSGGSDSVETALKLARQYWKVRGQP---ERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPW  180 (449)
T ss_pred             CCEEEEcCchHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCc
Confidence            6799999999999999999999998654432   4789999999999999999988876666655666666665543   


Q ss_pred             -----CC--CHHH--------HHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          232 -----YG--NIEA--------TRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       232 -----~~--d~~~--------le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                           +|  |.+.        +|+++.   ++++++||+||+++++|.++++++||++|+++|++||++||+|||+||||
T Consensus       181 ~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfG  260 (449)
T PRK07481        181 LYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFG  260 (449)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcC
Confidence                 34  5444        344443   46899999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC-------CCccCCCCCcHHHHHHHHHHHHHhcCh
Q 013008          294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNP  365 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~aaa~aal~~~~~~  365 (451)
                      |+|++|+++++++.||++|+||+++|| +|+|++++++++++.+..       ..|++||++||++|+|++++|++++++
T Consensus       261 RtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~  340 (449)
T PRK07481        261 RTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVRE  340 (449)
T ss_pred             cCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999 699999999999998853       257899999999999999999999888


Q ss_pred             HHHHH--------------HHhCCCCcceecccceeEEEEecC-------------ChHHHHHHHHHCCceeeecCCCCE
Q 013008          366 AFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV-------------SATPVVDACRDSGLLVLTAGKGNV  418 (451)
Q Consensus       366 ~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~-------------~~~~~~~~l~~~Gv~~~~~~~~~~  418 (451)
                      ++.++              +.+++|.+.++||.|+|+++++..             ....+...|+++||++.+.+  +.
T Consensus       341 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g--~~  418 (449)
T PRK07481        341 DLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG--TK  418 (449)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC--CE
Confidence            77666              345678889999999999999831             12457788899999998875  56


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          419 VRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       419 iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +|++||+++|++|||+++++|+++++++.
T Consensus       419 i~l~Ppl~it~~eid~~~~~l~~~l~~~~  447 (449)
T PRK07481        419 IILSPPLVIQREDVDRIVDALDAGLSAVP  447 (449)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            89999999999999999999999998753

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=5.8e-67  Score=529.32  Aligned_cols=371  Identities=31%  Similarity=0.573  Sum_probs=315.6

Q ss_pred             HHHHHhcccccCCC----CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 013008           66 MEAEKKLLVGTYNR----APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP  141 (451)
Q Consensus        66 ~~~~~~~~~~~~~~----~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~  141 (451)
                      ++...++.++.|..    .|+++++++|+||||.||++||||.+++++.+|||+||+|.+|+.+|++++.+....+.++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~   96 (451)
T PRK06062         17 YALDRAHVFHSWSAQGKINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDA   96 (451)
T ss_pred             HHhhhhhccccccccccCCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHH
Confidence            33334444444433    58999999999999999999999999999999999999999999999998766555567888


Q ss_pred             HHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..+|+++|++..+  .++|+|++||+||++.|+|+||.||+         |.+||.++++|||++.+++++++.+.... 
T Consensus        97 ~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tg---------r~~ii~~~~~yHG~t~~als~~~~~~~~~-  166 (451)
T PRK06062         97 RSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTG---------RPKVLSAYRSYHGGTGSAINLTGDPRRWP-  166 (451)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhC---------CceEEEEeCCCCCCCHHHHhhcCCccccc-
Confidence            9999999999885  68999999999999999999999974         78999999999999999999886543221 


Q ss_pred             CcCCCCCeeEe--------eC---CC-------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH
Q 013008          220 FEPVMPGVNFV--------EY---GN-------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD  278 (451)
Q Consensus       220 ~~~~~~~~~~~--------~~---~d-------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~  278 (451)
                      ..|..+++..+        ++   +|       +++|+++++   ++++++||+||+++++|+++|+++||++|+++|++
T Consensus       167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~  246 (451)
T PRK06062        167 NDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDR  246 (451)
T ss_pred             CCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence            12333444332        12   33       677888885   36799999999999999999999999999999999


Q ss_pred             hCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC--CccCCCCCcHHHHHHH
Q 013008          279 AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAA  355 (451)
Q Consensus       279 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa  355 (451)
                      ||++||+|||+|||||+|.+|+++++|+.||++||||++++| +|+|++++++++++.+...  .+++||++||++|+++
T Consensus       247 ~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa  326 (451)
T PRK06062        247 HGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAA  326 (451)
T ss_pred             cCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 5999999999999988643  5778999999999999


Q ss_pred             HHHHHHhcChHHHHH---------------HHhCCCCcceecccceeEEEEecC----------------ChHHHHHHHH
Q 013008          356 IAVLDKISNPAFLAS---------------KLARNPHVKDVRGLGLIIGIEFDV----------------SATPVVDACR  404 (451)
Q Consensus       356 ~aal~~~~~~~~~~~---------------~~~~~~~~~~v~g~G~~~~~~~~~----------------~~~~~~~~l~  404 (451)
                      +++|++++++++.++               +.+++|.+..++|.|+|+++++..                ....+.+.|+
T Consensus       327 ~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  406 (451)
T PRK06062        327 VATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACK  406 (451)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH
Confidence            999999977665543               334577788999999999999831                1346888899


Q ss_pred             HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          405 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       405 ~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ++||++.+.  ++.+||+||+++|++|||+++++|++++++++.
T Consensus       407 ~~Gvl~~~~--~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~~  448 (451)
T PRK06062        407 ERGLLPFVN--GNRIHVVPPCTVTEDEVREGLAILDAALAVADA  448 (451)
T ss_pred             HCCcEEeec--CCEEEEECCccCCHHHHHHHHHHHHHHHHHhhh
Confidence            999998764  378999999999999999999999999988753

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=9.5e-67  Score=529.00  Aligned_cols=378  Identities=28%  Similarity=0.494  Sum_probs=323.0

Q ss_pred             HHHHHHHhcccccCC-------CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-
Q 013008           64 EVMEAEKKLLVGTYN-------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-  135 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~-------~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-  135 (451)
                      .+++++.++.++++.       ..|+++++++|+|+||.||++||||.+++++.++||+||+|++|+.+|++++.+... 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~   86 (460)
T PRK06105          7 SLEARDIAYHLHPYTNARRHEEEGPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTF   86 (460)
T ss_pred             HHHHhhhhhcccCCcccccccccCCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecc
Confidence            345555555555443       248999999999999999999999999999999999999999999999998754322 


Q ss_pred             -CCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          136 -MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       136 -~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                       .+.++...+|+++|++..+  .++|+|++||+||++.|+|+++.+++.++..   +|.+||.++.+|||++.+++++++
T Consensus        87 ~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t---~r~~il~~~~~yHG~t~~a~s~t~  163 (460)
T PRK06105         87 SHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRP---EKKKIISRQRGYHGVTIASASLTG  163 (460)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCccCCcchhheeccC
Confidence             3567778999999999985  5799999999999999999999887544422   478999999999999999988887


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCC------------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHH
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGN------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQF  271 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~  271 (451)
                      ....+..+.+..+++..+++++                  ++++++++.   .+++++||+||+++++|+++++++||++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~  243 (460)
T PRK06105        164 LPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEK  243 (460)
T ss_pred             CcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHH
Confidence            6555555666556666665542                  366787774   4679999999999999999999999999


Q ss_pred             HHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC-------CccC
Q 013008          272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-------DHGS  343 (451)
Q Consensus       272 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-------~~~~  343 (451)
                      |+++|++||+++|+|||+|||||+|++|+++++++.||++|+||+++|| +|+|++++++++++.+...       .|++
T Consensus       244 lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~  323 (460)
T PRK06105        244 IQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGF  323 (460)
T ss_pred             HHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCC
Confidence            9999999999999999999999999999999999999999999999998 7999999999999987531       3788


Q ss_pred             CCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC-------------h
Q 013008          344 TFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS-------------A  396 (451)
Q Consensus       344 t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~-------------~  396 (451)
                      ||++||++|++++++|++++++++.++              + +++|.+.++||.|+++++++..+             +
T Consensus       324 T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a  402 (460)
T PRK06105        324 TASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVG  402 (460)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHH
Confidence            999999999999999999988777666              3 56788899999999999998310             2


Q ss_pred             HHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          397 TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ..+...|+++||++.+.+  +++|++||+++|++|||+++++|++++++++
T Consensus       403 ~~i~~~~~~~Gvl~~~~g--~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  451 (460)
T PRK06105        403 ARANAAAHEHGVISRAMG--DTLAFCPPLIITAAQVDEMVDRFGRALDDVA  451 (460)
T ss_pred             HHHHHHHHHCCeEEEecC--CEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence            467888899999998864  7899999999999999999999999998875

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.3e-66  Score=527.85  Aligned_cols=361  Identities=34%  Similarity=0.573  Sum_probs=316.5

Q ss_pred             ceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--CCe
Q 013008           81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--ADR  157 (451)
Q Consensus        81 p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~e~  157 (451)
                      |+.+++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|++++.+.+. .+.++...+|+++|++..+  .++
T Consensus        30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~  109 (466)
T PRK07030         30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSR  109 (466)
T ss_pred             CceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence            4689999999999999999999999999999999999999999999998765433 4567889999999999875  689


Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCC---
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN---  234 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---  234 (451)
                      |+|++||+||++.|+|+|+.|+..++..   +|.+||.++++|||++.+++++++...++..+.|..+++..+|+++   
T Consensus       110 v~f~~sGsEAve~AlKlAr~~~~~~g~t---~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~  186 (466)
T PRK07030        110 CFYADNGSSAIEVALKMSFHYWRNRGKP---RKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYL  186 (466)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHHhCCC---CCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccc
Confidence            9999999999999999999987544432   4788999999999999999998887666666666666666665443   


Q ss_pred             --------------HHHHHHhcC--CCCeEEEEEcc-ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc
Q 013008          235 --------------IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY  297 (451)
Q Consensus       235 --------------~~~le~~l~--~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~  297 (451)
                                    ++.+++++.  .+++++||+|| +++++|.++++++|+++|+++|++||++||+|||+|||||+|+
T Consensus       187 ~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~  266 (466)
T PRK07030        187 RPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT  266 (466)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc
Confidence                          566788885  46899999999 7999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCcceeeecccccCC-cccccccccHHHHhhccC-------CCccCCCCCcHHHHHHHHHHHHHhcChHHHH
Q 013008          298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPAFLA  369 (451)
Q Consensus       298 ~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  369 (451)
                      +|+++++|+.||++|+||+++|| +|+|++++++++++.+..       ..+++||++||++|+|++++|++++++++.+
T Consensus       267 ~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~  346 (466)
T PRK07030        267 MFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIE  346 (466)
T ss_pred             chHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999999999999999999 599999999999988742       2588999999999999999999998887776


Q ss_pred             H-------------HHhCCCCcceecccceeEEEEecC--C-----------hHHHHHHHHHCCceeeecCCCCEEEEeC
Q 013008          370 S-------------KLARNPHVKDVRGLGLIIGIEFDV--S-----------ATPVVDACRDSGLLVLTAGKGNVVRLVP  423 (451)
Q Consensus       370 ~-------------~~~~~~~~~~v~g~G~~~~~~~~~--~-----------~~~~~~~l~~~Gv~~~~~~~~~~iri~~  423 (451)
                      +             .+.++|.+.++||.|+++++++..  .           ..++.+.|+++|+++.+.+  +++|+.|
T Consensus       347 ~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g--~~i~~~P  424 (466)
T PRK07030        347 NNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLG--SVVYFLP  424 (466)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecC--CEEEEEC
Confidence            6             123577888999999999999831  0           2467888999999998864  6899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q 013008          424 PLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       424 ~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |+++|++||++++++|+++++++
T Consensus       425 pl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        425 PYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             CccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-66  Score=526.26  Aligned_cols=359  Identities=36%  Similarity=0.590  Sum_probs=308.3

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC---
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF---  154 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---  154 (451)
                      +.|+++++++|+||||.||++||||.+++++.+|||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+   
T Consensus        37 ~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~  116 (443)
T PRK06058         37 TLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDH  116 (443)
T ss_pred             CCCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            358999999999999999999999999999999999999999999999998654332 2456778999999999885   


Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCeeEee--
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVE--  231 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--  231 (451)
                      .++++|++||+||++.|+|+||.|++         +++||.++++|||++.+++++++. ..+...+.+..+++..+|  
T Consensus       117 ~~~v~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (443)
T PRK06058        117 EKRSALFNSGAEAVENAVKIARSYTG---------RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMS  187 (443)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHhhC---------CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCC
Confidence            36999999999999999999999974         788999999999999999988753 223444445445554333  


Q ss_pred             --CCC---------------HHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008          232 --YGN---------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR  294 (451)
Q Consensus       232 --~~d---------------~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  294 (451)
                        +++               ++.+++.+..+++++||+||+++++|.++|+++||++|+++|++||+++|+|||+|||||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgR  267 (443)
T PRK06058        188 YPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFAR  267 (443)
T ss_pred             cccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence              222               233445555568999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----
Q 013008          295 TGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----  370 (451)
Q Consensus       295 ~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----  370 (451)
                      +|.+|+++++|+.||++|+||++++|+|+|++++++++++.+....+.+||++||++|+|++++|+.++++++.++    
T Consensus       268 tG~~fa~~~~gv~PDiv~~gK~l~~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~  347 (443)
T PRK06058        268 TGAWFACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQI  347 (443)
T ss_pred             ChhhhHHHhcCCCCCEEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            9999999999999999999999999999999999999999997777889999999999999999999877766655    


Q ss_pred             ----------HHhCCCCcceecccceeEEEEecC---------ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHH
Q 013008          371 ----------KLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQ  430 (451)
Q Consensus       371 ----------~~~~~~~~~~v~g~G~~~~~~~~~---------~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e  430 (451)
                                +.++++.+.+++|.|+|+++++..         ....+.+.|+++||++.+.+. ++++|+.||+++|++
T Consensus       348 g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~  427 (443)
T PRK06058        348 EALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDE  427 (443)
T ss_pred             HHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHH
Confidence                      334567888899999999999831         134577888899999987643 579999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013008          431 ELDQAVEILCKTLPVL  446 (451)
Q Consensus       431 ~i~~~l~~l~~~l~~~  446 (451)
                      +|++++++|+++++++
T Consensus       428 ~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        428 LLREGLDVLEAALADL  443 (443)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999998753

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.8e-66  Score=527.02  Aligned_cols=364  Identities=33%  Similarity=0.579  Sum_probs=316.1

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--C
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~  155 (451)
                      +.|+++++++|+||||.||++||||.+++++.++||+||+|.+|+.+|++++.+.+. .+.++...+|+++|++..+  .
T Consensus        37 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~  116 (460)
T PRK06916         37 EDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGL  116 (460)
T ss_pred             CCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            358999999999999999999999999999999999999999999999998765533 3567889999999999986  5


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC--
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--  233 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  233 (451)
                      ++++|++||+||++.|+|+||.|+..++.+   +|.+||.++++|||++.+++++++...++..+.|..+++..+|++  
T Consensus       117 ~~v~f~~SGseAve~AlklAr~~~~~~g~t---gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~  193 (460)
T PRK06916        117 KKVFYSDSGATAVEIAIKMAFQYWQNKGKP---KKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYT  193 (460)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcc
Confidence            799999999999999999999987544322   578999999999999999999988766666666666666555442  


Q ss_pred             ---------------CHHHHHHhcC--CCCeEEEEEcc-ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008          234 ---------------NIEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT  295 (451)
Q Consensus       234 ---------------d~~~le~~l~--~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~  295 (451)
                                     +++.++++++  .+++++||+|| +++++|+++++++||++|+++|++||++||+|||+|||||+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRt  273 (460)
T PRK06916        194 YRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRT  273 (460)
T ss_pred             cccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcC
Confidence                           2566778775  46899999999 69999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC-------CCccCCCCCcHHHHHHHHHHHHHhcChHH
Q 013008          296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPAF  367 (451)
Q Consensus       296 G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~aaa~aal~~~~~~~~  367 (451)
                      |++|+++++|+.||++|+||+++|| +|+|++++++++++.+..       ..+++||++||++|+|++++|+.++++++
T Consensus       274 G~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l  353 (460)
T PRK06916        274 GKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNL  353 (460)
T ss_pred             chhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence            9999999999999999999999999 699999999999987642       24788999999999999999999988777


Q ss_pred             HHH-----------H--HhCCCCcceecccceeEEEEecCC-------------hHHHHHHHHHCCceeeecCCCCEEEE
Q 013008          368 LAS-----------K--LARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRL  421 (451)
Q Consensus       368 ~~~-----------~--~~~~~~~~~v~g~G~~~~~~~~~~-------------~~~~~~~l~~~Gv~~~~~~~~~~iri  421 (451)
                      .++           +  +.+++.+.+++|.|+|+++++..+             ...+...|+++||++.+.+  +.+||
T Consensus       354 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g--~~l~~  431 (460)
T PRK06916        354 IEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLG--NTIVF  431 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecC--CEEEE
Confidence            666           1  123677889999999999998311             2467888999999998864  68999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          422 VPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       422 ~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .||+++|++||++++++|+++++++-
T Consensus       432 ~Ppl~it~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06916        432 MPPLASTIDELDEMLRILYKAISDVT  457 (460)
T ss_pred             eCCcccCHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999998753

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=100.00  E-value=2.2e-66  Score=509.62  Aligned_cols=354  Identities=41%  Similarity=0.699  Sum_probs=321.5

Q ss_pred             CCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCe
Q 013008           78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADR  157 (451)
Q Consensus        78 ~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~  157 (451)
                      ...|+.+++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|+++..+....+.++...+|+++|++..+.++
T Consensus         4 ~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~~~~~   83 (364)
T PRK04013          4 YRKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWVNYEY   83 (364)
T ss_pred             cCCCccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhcCCCE
Confidence            35688999999999999999999999999999999999999999999999987655445678889999999999888889


Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHH
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA  237 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  237 (451)
                      ++|++||+||++.|+++++.++         +|++||.++.+|||++.+++++++.+.++..+.|..+++..+|++|++.
T Consensus        84 v~~~~SGseA~e~Alklar~~~---------gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~  154 (364)
T PRK04013         84 VYMGNSGTEAVEAALKFARLYT---------GRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEA  154 (364)
T ss_pred             EEEeCchHHHHHHHHHHHHHHh---------CCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHH
Confidence            9999999999999999999986         3789999999999999999998887777777778888899999999999


Q ss_pred             HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccc
Q 013008          238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL  317 (451)
Q Consensus       238 le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~l  317 (451)
                      +++.+. +++++||+||+++++|.++++++|+++|+++|++||+++|+|||+||| |+|++|+++++++.||++|+||++
T Consensus       155 l~~~i~-~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~l  232 (364)
T PRK04013        155 AKEAIT-KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGI  232 (364)
T ss_pred             HHHHhc-CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccc
Confidence            999996 479999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             cCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---HHh--CCCCcceecccceeEEEEe
Q 013008          318 AGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---KLA--RNPHVKDVRGLGLIIGIEF  392 (451)
Q Consensus       318 g~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---~~~--~~~~~~~v~g~G~~~~~~~  392 (451)
                      +||+|+|+++.++++.    ...+++||++||++|+|++++|+.++++++.++   .++  ..+.+.++||.|+|+++++
T Consensus       233 ggG~P~~a~~~~~~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~l~~l~~~~v~~vRG~Gl~~gve~  308 (364)
T PRK04013        233 GNGVPVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEKFIEIKGERVVTTRGRGLMIGIVL  308 (364)
T ss_pred             cCCceeEEEEeccccc----CCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHhccCcceeeeeCcEEEEEEe
Confidence            9999999999987762    346889999999999999999999999888877   211  2367889999999999999


Q ss_pred             cCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          393 DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       393 ~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ......+.+.|+++|+++.+.+. +++||.||+++|++++++++++|+++++++.
T Consensus       309 ~~~~~~i~~~~~~~Gll~~~~g~-~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~  362 (364)
T PRK04013        309 KKPVGKYVEELQNRGYLVHTAGQ-RVIRLLPPLIISKDTMEEAKSAIEGVINDIL  362 (364)
T ss_pred             CCcHHHHHHHHHhCCcEEeeCCC-CEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence            65567899999999999988765 8999999999999999999999999998754

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-66  Score=523.49  Aligned_cols=359  Identities=30%  Similarity=0.498  Sum_probs=311.5

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHhhccC--C
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~--~  155 (451)
                      +.|+++++++|+||||.||++||||.+++++.++||+||+|.+|+.+|++++.+.... ..++...+|+++|++..+  .
T Consensus        34 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~  113 (457)
T PRK05639         34 LFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIEN  113 (457)
T ss_pred             CCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCc
Confidence            4689999999999999999999999999999999999999999999999986554332 345678899999999886  4


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCeeEeeCCC
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN  234 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d  234 (451)
                      ++|+|++||+||++.|+|+||.+|+         |.+||.++++|||++.+++++++. ..++..+.|..+++.++|+++
T Consensus       114 ~~v~f~~SGsEA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~  184 (457)
T PRK05639        114 PKVLFGLSGSDAVDMAIKVSKFSTR---------RPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPN  184 (457)
T ss_pred             CEEEEeCchHHHHHHHHHHHHHhcC---------CCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCc
Confidence            7999999999999999999999874         788999999999999999887753 234455666667777777753


Q ss_pred             -------------H--------HHHHHhc-----CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecc
Q 013008          235 -------------I--------EATRKLI-----QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV  288 (451)
Q Consensus       235 -------------~--------~~le~~l-----~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv  288 (451)
                                   .        +.|++.+     .++++++||+||+++++|.++|+++||++|+++|++||++||+|||
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv  264 (457)
T PRK05639        185 PYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEV  264 (457)
T ss_pred             cccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence                         2        2455554     2468999999999999999999999999999999999999999999


Q ss_pred             ccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHH
Q 013008          289 QCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL  368 (451)
Q Consensus       289 ~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~  368 (451)
                      +|||||+|.+|+++++|+.||+++|||+++||+|+|++++++++++.. ...+.+|+++||++|+|++++|+.++++++.
T Consensus       265 ~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~  343 (457)
T PRK05639        265 QTGIGRTGKWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMDLT-SGSALLTPAANPVISAAAEATLEIIEEENLL  343 (457)
T ss_pred             hhccCcCchHHHHHhcCCCCCEEEechhhcCCCcceeEEehHHHHhhc-CCCcccCCCcCHHHHHHHHHHHHHHHHccHH
Confidence            999999999999999999999999999999999999999999999843 3456789999999999999999999887766


Q ss_pred             HH--------------HHhCCCCcceecccceeEEEEecC--------ChHHHHHHHHHCCceeeecCC-CCEEEEeCCC
Q 013008          369 AS--------------KLARNPHVKDVRGLGLIIGIEFDV--------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPL  425 (451)
Q Consensus       369 ~~--------------~~~~~~~~~~v~g~G~~~~~~~~~--------~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~  425 (451)
                      ++              +.++++.+.++||.|+|+++++..        ....+.+.|+++|+++.+.+. ++++||.||+
T Consensus       344 ~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl  423 (457)
T PRK05639        344 KNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPL  423 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCC
Confidence            55              335678888999999999999831        135688889999999987653 4799999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHh
Q 013008          426 IISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++|++|+|+++++|+++++++.
T Consensus       424 ~it~~~id~~~~~l~~~l~~~~  445 (457)
T PRK05639        424 VITKEIAEKGLEIMERAIKDAL  445 (457)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998764

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=3.1e-66  Score=524.56  Aligned_cols=375  Identities=33%  Similarity=0.559  Sum_probs=315.0

Q ss_pred             hHHHHHHHHhc--ccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc-ccCCC
Q 013008           62 NKEVMEAEKKL--LVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VSNMY  137 (451)
Q Consensus        62 ~~~~~~~~~~~--~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~  137 (451)
                      .+++.+.+.++  ..+.|. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|+++..+ .+..+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~   98 (459)
T PRK06931         19 NETYLARQAEFESNVRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDL   98 (459)
T ss_pred             hHHHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhcccccccc
Confidence            34455454322  344443 569999999999999999999999999999999999999999999999986332 22235


Q ss_pred             CCHHHHHHHHHHhhccC-C----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          138 YSIPQIELAKRLVACSF-A----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       138 ~~~~~~~l~~~l~~~~~-~----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .++...+|+++|++..+ .    ..+++++||+||++.|+|+||.||+         |++||.++++|||++.+++++++
T Consensus        99 ~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tg---------r~~Ii~~~~~yHG~t~~als~t~  169 (459)
T PRK06931         99 TTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTG---------RSNVISFSGGYHGMTHGALAVTG  169 (459)
T ss_pred             CCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcC---------CCeEEEECCCcCCccHHHHhhcC
Confidence            67778999999999886 2    1346669999999999999999974         88999999999999999998887


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCC-------------HHHH----HHhcC-----CCCeEEEEEccccCCCCccccCHHHHH
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGN-------------IEAT----RKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d-------------~~~l----e~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      ...++..+.|..+++.++|++|             .+.+    ++.++     .+++++||+||+++++|+++++++||+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~  249 (459)
T PRK06931        170 NLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQ  249 (459)
T ss_pred             CcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHH
Confidence            6666666667777877777654             2332    33332     246999999999999999999999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHH
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPL  350 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~  350 (451)
                      +|+++|++||++||+|||+|||||+|++|+++++|+.||++|+||+++||+|+|++++++++ +.+.+..+++||++||+
T Consensus       250 ~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpl  328 (459)
T PRK06931        250 KIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQL  328 (459)
T ss_pred             HHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCCcceeeeeeHHHH-hhccCCCCCCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999888774 77766678999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC----------------hHHHH
Q 013008          351 VCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS----------------ATPVV  400 (451)
Q Consensus       351 ~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~----------------~~~~~  400 (451)
                      +|++++++|+++++++++++              +.+++|.+.++||.|+|+++++..+                ...+.
T Consensus       329 a~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~  408 (459)
T PRK06931        329 AMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQ  408 (459)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHH
Confidence            99999999999988776665              4467888899999999999998311                23577


Q ss_pred             HHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          401 DACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       401 ~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..|+++|+++.+.+. ++++|+.||+++|++|+++++++|+++++++
T Consensus       409 ~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  455 (459)
T PRK06931        409 KACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAA  455 (459)
T ss_pred             HHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHH
Confidence            788999999987643 5899999999999999999999999999764

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=6.7e-66  Score=518.24  Aligned_cols=367  Identities=36%  Similarity=0.579  Sum_probs=319.9

Q ss_pred             ccccCCCC-ceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHh
Q 013008           73 LVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLV  150 (451)
Q Consensus        73 ~~~~~~~~-p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~  150 (451)
                      ..+.+.+. |+++++|+|+||||.||++||||.+++++.++||+||+|.+|+++|++++.+... .+.++...+|+++|+
T Consensus        14 ~~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~   93 (425)
T PRK07495         14 ISRGVGMTTQIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLN   93 (425)
T ss_pred             hccccCcCCCeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHH
Confidence            34445444 8999999999999999999999999999999999999999999999998765432 456777899999999


Q ss_pred             hccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCC
Q 013008          151 ACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPG  226 (451)
Q Consensus       151 ~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~  226 (451)
                      +..+   .++|+|++||+||++.|+|+||.+++         |.+||.++++|||++.+++++++. ..++..+.|..++
T Consensus        94 ~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~  164 (425)
T PRK07495         94 ALVPGDFAKKTIFVTTGAEAVENAVKIARAATG---------RSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPD  164 (425)
T ss_pred             HhCCCCCCCEEEECCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCC
Confidence            9886   37999999999999999999999974         778999999999999998887764 3455566666678


Q ss_pred             eeEeeCCC----------HHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          227 VNFVEYGN----------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       227 ~~~~~~~d----------~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                      +.++|+++          +++++++++    .+++++||+||+++++|.++++++|+++|+++|++||+++|+||||+||
T Consensus       165 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~  244 (425)
T PRK07495        165 VYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGF  244 (425)
T ss_pred             eEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcC
Confidence            88888764          556677764    3579999999999999988999999999999999999999999999999


Q ss_pred             CcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--  370 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--  370 (451)
                      ||+|.+++++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++|++++++|++++++++.++  
T Consensus       245 gr~G~~~a~~~~gv~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~  324 (425)
T PRK07495        245 ARTGKLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERAN  324 (425)
T ss_pred             CcCCCceeecccCCCCCEEeehhhhcCCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHH
Confidence            999998899999999999999999999999999999999999987777889999999999999999999987766655  


Q ss_pred             ------------HHhCCCCcceecccceeEEEEecCC---------hHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCC
Q 013008          371 ------------KLARNPHVKDVRGLGLIIGIEFDVS---------ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIIS  428 (451)
Q Consensus       371 ------------~~~~~~~~~~v~g~G~~~~~~~~~~---------~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t  428 (451)
                                  +.+++|.+..+++.|+|+++++...         ...+.+.|+++|+++.+.+. ++++||.||+++|
T Consensus       325 ~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it  404 (425)
T PRK07495        325 QLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQ  404 (425)
T ss_pred             HHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccC
Confidence                        3455787888999999999999321         34678888999999977543 5899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 013008          429 EQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       429 ~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ++++|+++++|++++++++.
T Consensus       405 ~~~id~~~~~l~~~l~~~~~  424 (425)
T PRK07495        405 DDVFAEALDILEASILEASA  424 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999988753

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=8.9e-66  Score=514.70  Aligned_cols=368  Identities=43%  Similarity=0.740  Sum_probs=327.2

Q ss_pred             cCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-
Q 013008           76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-  154 (451)
Q Consensus        76 ~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-  154 (451)
                      .+.+.|+++++++|+||||+||++||||.+++++.++||+||+|.+|+.+|+++..+.+..+.+++..+|+++|++..+ 
T Consensus        18 ~~~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~   97 (408)
T PRK04612         18 VYRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF   97 (408)
T ss_pred             ccCCCCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC
Confidence            3557789999999999999999999999999999999999999999999999987665444567788999999999875 


Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCC
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN  234 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  234 (451)
                      .++++|++||+||++.|+|+||.|++..+..  +++.+||.++++|||++.++++.++.+.++..+.+..+++..+|++|
T Consensus        98 ~~~v~f~~sGseA~e~AlklAr~~~~~~g~~--~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d  175 (408)
T PRK04612         98 AEKVFLCNSGTEANEAAIKLVRKWASSQGRP--ADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFND  175 (408)
T ss_pred             CCEEEEcCchHHHHHHHHHHHHHHHHhhCCC--CCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCC
Confidence            5899999999999999999999997543321  13668999999999999999998887766666767667788899999


Q ss_pred             HHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec
Q 013008          235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA  314 (451)
Q Consensus       235 ~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s  314 (451)
                      ++.++++++++++++||+||+++++|+++++++|+++|+++|++||+++|+||||+||||+|.+++...+++.||++|||
T Consensus       176 ~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~  255 (408)
T PRK04612        176 VEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLA  255 (408)
T ss_pred             HHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEc
Confidence            99999999867899999999999999999999999999999999999999999999999999988877889999999999


Q ss_pred             ccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcce
Q 013008          315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKD  380 (451)
Q Consensus       315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~  380 (451)
                      |++++|+|+|++++++++++.+....+.+||++||++|+++.++|+.++++++.++              +.++++.+.+
T Consensus       256 K~l~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~  335 (408)
T PRK04612        256 KALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQ  335 (408)
T ss_pred             chhcCCCceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCeee
Confidence            99999999999999999999887767889999999999999999999987776655              3355677889


Q ss_pred             ecccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          381 VRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       381 v~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++|.|+|+++++..    .+..+++.|+++|+++.+.+. +.+|+.|++.+|++||++++++|++++.++
T Consensus       336 vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~-~~lRl~Ppl~it~eeid~~l~~l~~~l~~~  404 (408)
T PRK04612        336 VRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGP-DVLRFVPALNLTDAELADGLARLRLALADY  404 (408)
T ss_pred             eeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeCCC-CEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999842    256788899999999988765 899999999999999999999999999875

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=4.3e-66  Score=523.16  Aligned_cols=363  Identities=31%  Similarity=0.516  Sum_probs=308.4

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC--C
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~--~  155 (451)
                      .|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|++++.+.+.  .+.++...+|+++|++..+  .
T Consensus        32 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~  111 (456)
T PRK07480         32 GSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGF  111 (456)
T ss_pred             CCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCc
Confidence            47899999999999999999999999999999999999999999999998765432  3567889999999999985  6


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC--
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--  233 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  233 (451)
                      ++|+|++||+||++.|+|+||.|+..++..   +|.+||.++++|||++.+++++++...++..+.+..+++..++++  
T Consensus       112 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~  188 (456)
T PRK07480        112 NHVFFTNSGSEANDTVLRMVRHYWALKGKP---QKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYW  188 (456)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcc
Confidence            799999999999999999999997544322   478899999999999999988887654444343434555544432  


Q ss_pred             -------------C--HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008          234 -------------N--IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT  295 (451)
Q Consensus       234 -------------d--~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~  295 (451)
                                   |  +++|++.+.   .+++++||+||+++++|+++++++||++|+++|++||++||+|||+|||||+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRt  268 (456)
T PRK07480        189 FGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRT  268 (456)
T ss_pred             cccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC
Confidence                         1  366765553   4689999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcceeeecccccCC-cccccccccHHHHhhcc--CC--CccCCCCCcHHHHHHHHHHHHHhcChHHHHH
Q 013008          296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN--YG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS  370 (451)
Q Consensus       296 G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~--~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~  370 (451)
                      |++|+++++|+.||++||||+++|| +|+|++++++++++.+.  ..  .+++||++||++|+|++++|++++++++.++
T Consensus       269 G~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~  348 (456)
T PRK07480        269 GEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVER  348 (456)
T ss_pred             cchhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999999999999999999999999 59999999999999882  22  5789999999999999999999977655433


Q ss_pred             ------------H--HhCCCCcceecccceeEEEEecCC-------------hHHHHHHHHHCCceeeecCCCCEEEEeC
Q 013008          371 ------------K--LARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRLVP  423 (451)
Q Consensus       371 ------------~--~~~~~~~~~v~g~G~~~~~~~~~~-------------~~~~~~~l~~~Gv~~~~~~~~~~iri~~  423 (451)
                                  +  ++++|.+.+++|.|+|+++++..+             ...+.+.|+++||++.+.+  +.+||.|
T Consensus       349 ~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~--~~l~~~P  426 (456)
T PRK07480        349 VRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVG--DRMIISP  426 (456)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeecC--CEEEEEC
Confidence                        1  135677889999999999999311             1356778899999998753  7899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          424 PLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       424 ~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      |+++|++|||+++++|++++.+++
T Consensus       427 pl~it~~eid~~~~~l~~al~~~~  450 (456)
T PRK07480        427 PLVITHAEIDELVEKARKALDATA  450 (456)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998874

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=3.3e-66  Score=527.91  Aligned_cols=363  Identities=29%  Similarity=0.554  Sum_probs=309.2

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC---
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF---  154 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~---  154 (451)
                      .|+++++++|+|+||.|||+||||.+++++.+|||+||+|++|+.+|++++.+.+.  .+.+++..+|+++|.+.+.   
T Consensus        71 ~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~  150 (504)
T PLN02760         71 EPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARK  150 (504)
T ss_pred             CCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCC
Confidence            58999999999999999999999999999999999999999999999998765432  3467779999999999853   


Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCC
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN  234 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  234 (451)
                      .++++|++||+|||+.|+|+|+.|++..+.+   ++.+||.++.+|||++.+++++++.+.+...+.+..+++..+++++
T Consensus       151 ~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~---~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~  227 (504)
T PLN02760        151 MGKVFFTNSGSEANDTQVKLVWYYNNALGRP---NKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH  227 (504)
T ss_pred             CCEEEEeCChHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCc
Confidence            4689999999999999999999987544322   4789999999999999999988876554444444334444433211


Q ss_pred             ------------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          235 ------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       235 ------------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                                        .++|++++.   ++++++||+||+++++|+++|+++||++|+++|++||++||+|||+||||
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfG  307 (504)
T PLN02760        228 YWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFG  307 (504)
T ss_pred             ccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCc
Confidence                              245777663   45799999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC-------CCccCCCCCcHHHHHHHHHHHHHhcCh
Q 013008          294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNP  365 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~aaa~aal~~~~~~  365 (451)
                      |+|++|+++++|+.||++||||+++|| +|+|++++++++++.+..       ..|++||++||++|+|++++|++++++
T Consensus       308 RtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~  387 (504)
T PLN02760        308 RLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKER  387 (504)
T ss_pred             ccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999 599999999999998853       257899999999999999999999887


Q ss_pred             HHHHH-------------HHhCCCCcceecccceeEEEEecC--C-----------hHHHHHHHHHCCceeeecCCCCEE
Q 013008          366 AFLAS-------------KLARNPHVKDVRGLGLIIGIEFDV--S-----------ATPVVDACRDSGLLVLTAGKGNVV  419 (451)
Q Consensus       366 ~~~~~-------------~~~~~~~~~~v~g~G~~~~~~~~~--~-----------~~~~~~~l~~~Gv~~~~~~~~~~i  419 (451)
                      ++.++             -++++|.+.++||.|+|+++++..  .           ...+.+.|+++||++.+.+  +.+
T Consensus       388 ~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g--~~l  465 (504)
T PLN02760        388 NIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG--DNI  465 (504)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC--CEE
Confidence            76666             114567888999999999999831  1           3457888999999998764  679


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          420 RLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       420 ri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ||+||+++|++|||+++++|++++++++
T Consensus       466 rl~Ppl~it~eeid~~~~~l~~al~~~~  493 (504)
T PLN02760        466 MMSPPLIITPEEVDELISIYGKALKATE  493 (504)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987763

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=8e-66  Score=520.61  Aligned_cols=378  Identities=29%  Similarity=0.594  Sum_probs=323.3

Q ss_pred             chHHHHHHHHhcccccC--CCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CC
Q 013008           61 NNKEVMEAEKKLLVGTY--NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MY  137 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~--~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~  137 (451)
                      .++.+.+...++..+.+  ...|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~   82 (445)
T PRK08593          3 KAHQLIQEDEHYFAKSGRIKYYPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYM   82 (445)
T ss_pred             hHHHHHHHHHHhhccccccCCCCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCcccccc
Confidence            34455555555555544  3368999999999999999999999999999999999999999999999998765433 35


Q ss_pred             CCHHHHHHHHHHhhccC-C--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          138 YSIPQIELAKRLVACSF-A--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       138 ~~~~~~~l~~~l~~~~~-~--e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      .++...+|+++|++..+ .  ++|+|++||+||++.|+|+||.+|+         |.+||.++++|||++.+++++++..
T Consensus        83 ~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tg---------r~~ii~~~~~YHG~t~~als~s~~~  153 (445)
T PRK08593         83 YHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTG---------RPYIISFTNAYHGSTYGSLSMSGIS  153 (445)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCCcHHHHhhcCCC
Confidence            67789999999999985 2  6999999999999999999999974         7889999999999999999888643


Q ss_pred             -CcCCCCcCCCCCeeEeeCCCH-----------------HHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHH
Q 013008          215 -HYRSPFEPVMPGVNFVEYGNI-----------------EATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFL  272 (451)
Q Consensus       215 -~~~~~~~~~~~~~~~~~~~d~-----------------~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l  272 (451)
                       .++..+.|..+++.++|++|.                 ++++++++    .+++++||+||+++++|.++++++||++|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l  233 (445)
T PRK08593        154 LNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEAL  233 (445)
T ss_pred             cccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHH
Confidence             234445666677777766532                 44555553    36799999999999999999999999999


Q ss_pred             HHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHH
Q 013008          273 RDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC  352 (451)
Q Consensus       273 ~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~  352 (451)
                      +++|++||++||+||||+||||+|.+++++++++.||++|+||++++|+|+|++++++++++.+....+.+|+++||++|
T Consensus       234 ~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~  313 (445)
T PRK08593        234 YKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSC  313 (445)
T ss_pred             HHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHH
Confidence            99999999999999999999999999899999999999999999999999999999999999987666788999999999


Q ss_pred             HHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCc
Q 013008          353 NAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGL  408 (451)
Q Consensus       353 aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv  408 (451)
                      +|++++|+.++++++.++              +.+++|.+.++||.|+++++++..          ....++..|+++||
T Consensus       314 aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv  393 (445)
T PRK08593        314 AAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGV  393 (445)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCe
Confidence            999999999988777655              335678889999999999998831          13468888999999


Q ss_pred             eeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          409 LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       409 ~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ++.+.+. +++||.||+++|++||++++++++++++++..
T Consensus       394 ~~~~~~~-~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  432 (445)
T PRK08593        394 VIIAVAG-NVLRFQPPLVITYEQLDTALNTIEQAFTALEA  432 (445)
T ss_pred             EEeccCC-CEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            9977543 78999999999999999999999999988754

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=1.1e-65  Score=515.16  Aligned_cols=368  Identities=44%  Similarity=0.784  Sum_probs=325.0

Q ss_pred             cccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc
Q 013008           74 VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS  153 (451)
Q Consensus        74 ~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  153 (451)
                      .+.|.+.|+++++++|+++||.||++||||.+++++.+|||+||+|.+|+.++++++.+....+.++...+|+++|++..
T Consensus        11 ~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~   90 (397)
T TIGR03246        11 VPNYAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDAT   90 (397)
T ss_pred             hcccCCCCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC
Confidence            33456779999999999999999999999999999999999999999999999998544333456777999999999998


Q ss_pred             CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC
Q 013008          154 FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG  233 (451)
Q Consensus       154 ~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (451)
                      +.++++|++||+|||+.|++++|.||..+++.   +|++||.++.+|||++..++++++.+.+...+.|..+++..+++|
T Consensus        91 ~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~---~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (397)
T TIGR03246        91 FADKVFFCNSGAEANEAALKLARRYALDKHGA---DKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN  167 (397)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC
Confidence            88999999999999999999999997543222   478999999999999999888887766666677777888899999


Q ss_pred             CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee
Q 013008          234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL  313 (451)
Q Consensus       234 d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~  313 (451)
                      |++++++++. +++++||+||+++++|.++++++||++|+++|++||+++|+||||+||||+|.+++++++++.||++|+
T Consensus       168 d~~~l~~~l~-~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~  246 (397)
T TIGR03246       168 DLAAAKALIS-DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTS  246 (397)
T ss_pred             CHHHHHHHhc-cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEe
Confidence            9999999996 479999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             cccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc
Q 013008          314 AKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK  379 (451)
Q Consensus       314 sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~  379 (451)
                      ||++++|+|+|++++++++++.+....+.+||++||++|++++++|+.++++++.++              +..+++.+.
T Consensus       247 ~K~lggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~  326 (397)
T TIGR03246       247 AKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARYNVFS  326 (397)
T ss_pred             ehhhhCCcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            999998999999999999999997667788999999999999999998876666555              223355677


Q ss_pred             eecccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          380 DVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       380 ~v~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .+++.|+++++++..    ....+++.|+++|+++.+.+. +++|+.|++.+|+++|++++++|++++.++
T Consensus       327 ~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~-~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       327 EIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGP-NVVRFAPSLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             eeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeecCC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            889999999998832    356889999999999988765 789999999999999999999999998754

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-66  Score=487.23  Aligned_cols=388  Identities=49%  Similarity=0.827  Sum_probs=336.9

Q ss_pred             hhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHH
Q 013008           48 NDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA  127 (451)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~  127 (451)
                      ..++...+++..+.++         .+.+|.+.|+.+.+++|++++|.||++||||+++|++..+||+||+|.+|+.+++
T Consensus        15 ~~~~~~~~~i~~~~~~---------~~~t~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~   85 (433)
T KOG1401|consen   15 NAASVSMPGIVEEKTR---------IVSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQA   85 (433)
T ss_pred             cchhhccccccccceE---------EeeecCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHH
Confidence            3344555666544443         3446778999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCCCCCHHHHHHHHHHhhcc---CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCCh
Q 013008          128 NVLTHVSNMYYSIPQIELAKRLVACS---FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT  204 (451)
Q Consensus       128 ~~~~~~~~~~~~~~~~~l~~~l~~~~---~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~  204 (451)
                      .++.|.++.+++....++++.|.+..   ..++|+|+|||+|||+.||++||+++....+.   .+.++|.|+++|||.+
T Consensus        86 ~k~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~---~~t~~Iaf~nsyHG~t  162 (433)
T KOG1401|consen   86 KKLGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPE---KKTKFIAFENSYHGRT  162 (433)
T ss_pred             hhheeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCc---cceeEEEEecCcCCcc
Confidence            99999888888877999999999988   49999999999999999999999999866554   3467999999999999


Q ss_pred             hhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCE
Q 013008          205 MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL  282 (451)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l  282 (451)
                      +++++.++...++.++.|..|++...++||..+|++.++.  ++++|||+||++|+||.++++++||..|+++|+++|++
T Consensus       163 lgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl  242 (433)
T KOG1401|consen  163 LGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVL  242 (433)
T ss_pred             hhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCce
Confidence            9999999888888888899999999999999999999983  46999999999999999999999999999999999999


Q ss_pred             EEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCc---cCCCCCcHHHHHHHHHHH
Q 013008          283 LVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH---GSTFAGSPLVCNAAIAVL  359 (451)
Q Consensus       283 lI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~---~~t~~~~~~~~aaa~aal  359 (451)
                      ||+|||+|||||+|..|++++++++|||.|++|.|+||+|+|++++++++++.+.+..+   ++||++||++|.++..+|
T Consensus       243 ~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l  322 (433)
T KOG1401|consen  243 LIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVL  322 (433)
T ss_pred             EEeehhhhCccccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988755   999999999999999999


Q ss_pred             HHhcChHHHHH--------------HHhCCC-CcceecccceeEEEEecCChHHHHHHHHHCCceeeecCCC---CEEEE
Q 013008          360 DKISNPAFLAS--------------KLARNP-HVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKG---NVVRL  421 (451)
Q Consensus       360 ~~~~~~~~~~~--------------~~~~~~-~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~~iri  421 (451)
                      +.+.+++++++              ...+.+ .+...+++|+++++.+......+.+...+.|.++.+.+.+   ..+|+
T Consensus       323 ~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i  402 (433)
T KOG1401|consen  323 DELKDPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRI  402 (433)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccceEEE
Confidence            99999888877              223344 2333478999999988666666777777777766655431   34788


Q ss_pred             eC--CCC--CCHHHHHHHHHHHHHHHHHHh
Q 013008          422 VP--PLI--ISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       422 ~~--~~~--~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .|  .++  +++|.++++++++.+.+.++.
T Consensus       403 ~P~~~l~~~~~~E~i~~~l~i~~~~l~~~~  432 (433)
T KOG1401|consen  403 APIYLLTVEHTPEVIQRLLTILEKVLSALN  432 (433)
T ss_pred             eccccccccCcHHHHHHHHHHHHHHHHHhc
Confidence            87  343  449999999999999988763

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=8.7e-66  Score=522.28  Aligned_cols=363  Identities=29%  Similarity=0.488  Sum_probs=311.7

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC--C
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~--~  155 (451)
                      .|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+.+..  ..++...+|+++|++..+  .
T Consensus        33 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~  112 (466)
T PRK07036         33 GSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDL  112 (466)
T ss_pred             CCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCc
Confidence            488999999999999999999999999999999999999999999999986554332  567789999999999885  6


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCC-
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN-  234 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  234 (451)
                      ++|+|++||+||++.|+|+||.|+..++..   +|.+||.++++|||++.+++++++...++..|.+..+++.++++++ 
T Consensus       113 ~~v~f~~sGseAve~AlklAr~~~~~~g~t---~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~  189 (466)
T PRK07036        113 NHVFLTTGGSTAVDSALRFVHYYFNVRGRP---AKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNP  189 (466)
T ss_pred             CEEEEeCCchHHHHHHHHHHHHHHHhcCCC---CccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcc
Confidence            799999999999999999999997654432   4789999999999999999888877666656666555555554332 


Q ss_pred             ----------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008          235 ----------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT  295 (451)
Q Consensus       235 ----------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~  295 (451)
                                      ++.+++.+.   ++++++||+||+++++|+++|+++||++|+++|++||+++|+|||+|||||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRt  269 (466)
T PRK07036        190 YRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRL  269 (466)
T ss_pred             cccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcC
Confidence                            244555553   4689999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc-ccCCCcceeeecccccCC-cccccccccHHHHhhccC-------CCccCCCCCcHHHHHHHHHHHHHhcChH
Q 013008          296 GYLWAHE-HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKISNPA  366 (451)
Q Consensus       296 G~~~~~~-~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~aaa~aal~~~~~~~  366 (451)
                      |++|+++ ++|+.|||+|+||+++|| +|+|++++++++++.+..       ..+++||++||++|+|++++|+++++++
T Consensus       270 G~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~  349 (466)
T PRK07036        270 GHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREG  349 (466)
T ss_pred             chhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            9988887 789999999999999999 599999999999998752       2467899999999999999999998777


Q ss_pred             HHHH-------------HHhCCCCcceecccceeEEEEecC-------------ChHHHHHHHHHCCceeeecCCCCEEE
Q 013008          367 FLAS-------------KLARNPHVKDVRGLGLIIGIEFDV-------------SATPVVDACRDSGLLVLTAGKGNVVR  420 (451)
Q Consensus       367 ~~~~-------------~~~~~~~~~~v~g~G~~~~~~~~~-------------~~~~~~~~l~~~Gv~~~~~~~~~~ir  420 (451)
                      ++++             .++++|.+.+++|.|+|++++|..             ....+.+.|+++||++.+.+  +.+|
T Consensus       350 l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~--~~~~  427 (466)
T PRK07036        350 LCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE--HLCV  427 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecC--CEEE
Confidence            6666             124578888999999999999931             02457888999999998764  6799


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          421 LVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       421 i~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++||+++|++|||+++++|+++++++.
T Consensus       428 l~Ppl~it~~~id~~~~~l~~al~~~~  454 (466)
T PRK07036        428 LSPPLIITRAQIDEIVAILRAAIEETA  454 (466)
T ss_pred             EeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997763

>PLN00144 acetylornithine transaminase

Probab=100.00  E-value=8.1e-66  Score=512.34  Aligned_cols=363  Identities=80%  Similarity=1.273  Sum_probs=325.1

Q ss_pred             EEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCC
Q 013008           84 LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNT  163 (451)
Q Consensus        84 ~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~s  163 (451)
                      +++++|+|+||.||++||||.+++++.+|||+||+|.+|+.+|+++..+....+.++...+|+++|++..+.++|+|++|
T Consensus         1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~s   80 (382)
T PLN00144          1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRVFFCNS   80 (382)
T ss_pred             CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCCCCeEEEeCC
Confidence            36899999999999999999999999999999999999999999987665555567789999999999888889999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCC----CCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHH
Q 013008          164 GTEANEAAIKFARKFQRHSNPDSK----EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR  239 (451)
Q Consensus       164 G~eA~~~al~~a~~~~~~~~~~~~----~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le  239 (451)
                      |+||++.|+|+||.+++.++....    ..+.+||.++++|||++.+++++++...++..+.|..+++.++|+||+++|+
T Consensus        81 GseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~  160 (382)
T PLN00144         81 GTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAAR  160 (382)
T ss_pred             cHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHH
Confidence            999999999999999875432210    0157899999999999999999888776666777778889999999999999


Q ss_pred             HhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccC
Q 013008          240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG  319 (451)
Q Consensus       240 ~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~  319 (451)
                      +++..+++++||+||+++++|+.+++++|+++|+++|++||+++|+||||+||||+|.+++++++++.||++||||++++
T Consensus       161 ~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~  240 (382)
T PLN00144        161 KLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAG  240 (382)
T ss_pred             HhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccC
Confidence            99986789999999999998998999999999999999999999999999999999998888889999999999999999


Q ss_pred             CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccc
Q 013008          320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLG  385 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G  385 (451)
                      |+|+|++++++++++.+....+.+||++||++|+++.++|+.++++++.++              +++++|.+..+++.|
T Consensus       241 G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg~G  320 (382)
T PLN00144        241 GLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVG  320 (382)
T ss_pred             CcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCc
Confidence            999999999999999997777889999999999999999999987766555              345567778899999


Q ss_pred             eeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          386 LIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       386 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +++|++++.....+++.++++||++.|++.++.+|+.|+++++++++++++++|++++.++
T Consensus       321 ~~~~l~l~~~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        321 LLVGIQLDVPAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             eEEEEEecCccHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence            9999999656778999999999999987645899999999999999999999999999764

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=3.1e-65  Score=517.93  Aligned_cols=380  Identities=26%  Similarity=0.436  Sum_probs=313.8

Q ss_pred             hHHHHHHHHhcccccCC-------CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc
Q 013008           62 NKEVMEAEKKLLVGTYN-------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS  134 (451)
Q Consensus        62 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~  134 (451)
                      .+++.+.+.++.++++.       +.|+++++++|+|+||.||++||||.+++++.+|||+||+|++|+.+|++++.+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~   90 (460)
T PRK12403         11 TRDYQAADAAHHIHAFLDQKALNAEGPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYN   90 (460)
T ss_pred             hHHHHHhhhcccccccccccccccCCCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCee
Confidence            44444444444444333       24899999999999999999999999999999999999999999999999876553


Q ss_pred             CC--CCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc
Q 013008          135 NM--YYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL  210 (451)
Q Consensus       135 ~~--~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~  210 (451)
                      ..  +.++...+|+++|++.++  .++++|++||+|||+.|+|++|.|+...+.+   .+..|+.+..+|||++.+++++
T Consensus        91 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~~~s~  167 (460)
T PRK12403         91 MFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKP---QKKIMIGRWNGYHGSTLAATAL  167 (460)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCC---CCcEEEEECCCcCcccHhhhhc
Confidence            32  356779999999999987  6899999999999999999999997543322   3567889999999999999998


Q ss_pred             cCCCCcCCCCcCCCCCeeEeeCCC-----------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHH
Q 013008          211 TSKEHYRSPFEPVMPGVNFVEYGN-----------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      ++...++. +.+..+++..+|+++                 +++|++.+.   .+++++||+||+++++|+++++++||+
T Consensus       168 s~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~  246 (460)
T PRK12403        168 GGMKFMHE-MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWP  246 (460)
T ss_pred             CCCccccc-cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHH
Confidence            87554332 334445565554331                 356766653   367999999999999999999999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC----CCccCCC
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY----GDHGSTF  345 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~----~~~~~t~  345 (451)
                      +|+++|++||++||+|||+|||||+|++|+++++|+.||++|+||+++|| +|+|++++++++++.+..    ..+++||
T Consensus       247 ~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~  326 (460)
T PRK12403        247 EIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTY  326 (460)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCC
Confidence            99999999999999999999999999999999999999999999999999 599999999999998743    1378899


Q ss_pred             CCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCCCCcceecccceeEEEEecCC-------------hH
Q 013008          346 AGSPLVCNAAIAVLDKISNPAFLAS---------------KLARNPHVKDVRGLGLIIGIEFDVS-------------AT  397 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~~~~~~v~g~G~~~~~~~~~~-------------~~  397 (451)
                      ++||++|+|++++|++++++++.++               +.+++|.+.++||.|+|+++++..+             ..
T Consensus       327 ~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~  406 (460)
T PRK12403        327 SGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAW  406 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHH
Confidence            9999999999999999977654433               3356788899999999999999311             12


Q ss_pred             HHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          398 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       398 ~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+...|+++|+++.+.+  +.+|++||+++|++|+++++++|+++++++.
T Consensus       407 ~~~~~~~~~Gll~~~~~--~~~~l~Ppl~it~~eid~~~~~l~~al~~~~  454 (460)
T PRK12403        407 RCRTIGFEEGVIIRSTL--GRMIMAPALVAGRAEIDELVDKTRIAVDRTA  454 (460)
T ss_pred             HHHHHHHhCCEEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34566789999998654  5689999999999999999999999998874

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=3.6e-65  Score=516.36  Aligned_cols=358  Identities=32%  Similarity=0.543  Sum_probs=306.6

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccCC--
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSFA--  155 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~--  155 (451)
                      +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|+++..+.+. .+.++...+|+++|++..+.  
T Consensus        20 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~   99 (442)
T TIGR00709        20 KLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRK   99 (442)
T ss_pred             CCCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcC
Confidence            468999999999999999999999999999999999999999999999988554322 35677799999999998852  


Q ss_pred             --Ce-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          156 --DR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       156 --e~-v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                        .+ +++++||+||++.|+|+||.||+         |.+||.++++|||++.+++++++...++.++.+..+++.++++
T Consensus       100 ~~~~~~f~~~sGsEA~e~AlklAr~~tg---------r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~  170 (442)
T TIGR00709       100 MDYKLQFPGPSGADAVEAAIKLAKTYTG---------RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPY  170 (442)
T ss_pred             CCccEEEeCCCHHHHHHHHHHHHHHhcC---------CCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCC
Confidence              24 55569999999999999999974         7889999999999999999988765555555566666666665


Q ss_pred             CCH-----------------HHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008          233 GNI-----------------EATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC  290 (451)
Q Consensus       233 ~d~-----------------~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  290 (451)
                      ++.                 +.+++.++     .+++++||+||+++++|.++++++||++|+++|++||++||+|||+|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~t  250 (442)
T TIGR00709       171 PHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQA  250 (442)
T ss_pred             CccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            431                 22344442     25799999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH
Q 013008          291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS  370 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~  370 (451)
                      ||||+|++|+++++++.||++|+||++++|+|+|+++++++ ++.+....+.+||++||++|+|++++|+.++++++.++
T Consensus       251 GfGRtG~~~a~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~  329 (442)
T TIGR00709       251 GFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQN  329 (442)
T ss_pred             CCCCCCchhHHHHcCCCCcEEEEcccccCCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999999999999999988 56665556789999999999999999999887766655


Q ss_pred             --------------HHhCCCCcceecccceeEEEEecCC----------------hHHHHHHHHHCCceeeecCC-CCEE
Q 013008          371 --------------KLARNPHVKDVRGLGLIIGIEFDVS----------------ATPVVDACRDSGLLVLTAGK-GNVV  419 (451)
Q Consensus       371 --------------~~~~~~~~~~v~g~G~~~~~~~~~~----------------~~~~~~~l~~~Gv~~~~~~~-~~~i  419 (451)
                                    +.+++|.+.++||.|+|+++++..+                ...+...|+++|+++.+.+. ++++
T Consensus       330 ~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l  409 (442)
T TIGR00709       330 AQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVF  409 (442)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEE
Confidence                          3457888899999999999999311                34577788999999987653 5899


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          420 RLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       420 ri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |+.||+++|++|++++++++++++.++
T Consensus       410 ~~~Ppl~it~~ei~~~~~~l~~~l~~~  436 (442)
T TIGR00709       410 RLLCPITIDQEECEEGISRFKQAVEEA  436 (442)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999876

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=9.2e-65  Score=513.96  Aligned_cols=381  Identities=35%  Similarity=0.579  Sum_probs=320.7

Q ss_pred             HHHHHHHhcccccCCC-------CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-
Q 013008           64 EVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-  135 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-  135 (451)
                      .+.+.+.++.+++|..       .|+++++++|+||||.||++||||.+++++.+|||+||+|.+|+.+|++++.+... 
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~   90 (460)
T PRK06541         11 DLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLW   90 (460)
T ss_pred             HHHHHhhcccccCccCccccccCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCcccc
Confidence            3444445566555433       26789999999999999999999999999999999999999999999998765432 


Q ss_pred             CCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          136 MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       136 ~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      .+.++...+|+++|++..+  .++|+|++||+||++.|+|+||.|++..+.+   +|.+||.++++|||++.+++++++.
T Consensus        91 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~a~s~~~~  167 (460)
T PRK06541         91 SYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKP---GKHKVISRAIAYHGTTQGALAITGL  167 (460)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC---CccEEEEEcCcccCcchhhhcCcCC
Confidence            4567789999999999875  6799999999999999999999997543322   4789999999999999999998877


Q ss_pred             CCcCCCCcCCCCCeeEeeCCC------------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHH
Q 013008          214 EHYRSPFEPVMPGVNFVEYGN------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFL  272 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l  272 (451)
                      +.++..+.|..+++..+|+++                  ++.++++++   ++++++||+||+++++|.++++++||++|
T Consensus       168 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l  247 (460)
T PRK06541        168 PAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERV  247 (460)
T ss_pred             hhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence            666666667677776665332                  367888875   46899999999999999999999999999


Q ss_pred             HHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCc-ccccccccHHHHhhccCC----CccCCCCC
Q 013008          273 RDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYG----DHGSTFAG  347 (451)
Q Consensus       273 ~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~~----~~~~t~~~  347 (451)
                      +++|++||++||+|||||||||+|.+|+++++++.||++||||++++|+ |+|++++++++++.+...    .+++||++
T Consensus       248 ~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~g  327 (460)
T PRK06541        248 REICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGG  327 (460)
T ss_pred             HHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCCC
Confidence            9999999999999999999999999999999999999999999999996 999999999999887532    36789999


Q ss_pred             cHHHHHHHHHHHHHhcChHHHHH-----------H--HhCCCCcceecccceeEEEEecCC---------------h-HH
Q 013008          348 SPLVCNAAIAVLDKISNPAFLAS-----------K--LARNPHVKDVRGLGLIIGIEFDVS---------------A-TP  398 (451)
Q Consensus       348 ~~~~~aaa~aal~~~~~~~~~~~-----------~--~~~~~~~~~v~g~G~~~~~~~~~~---------------~-~~  398 (451)
                      ||+++++++++|+.++++++.++           +  +..+|.+..+++.|+|++++|..+               . ..
T Consensus       328 np~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~  407 (460)
T PRK06541        328 HPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGF  407 (460)
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHH
Confidence            99999999999999877766655           1  123677788999999999998211               0 24


Q ss_pred             HHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          399 VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       399 ~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +...|+++||++.+.+. .+++||+||+++|++|||+++++|++++.++.
T Consensus       408 ~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06541        408 LSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAW  457 (460)
T ss_pred             HHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            67888999999987532 27899999999999999999999999998764

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=7e-65  Score=512.59  Aligned_cols=383  Identities=25%  Similarity=0.361  Sum_probs=324.3

Q ss_pred             hhhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCH
Q 013008           38 VAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA  117 (451)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p  117 (451)
                      +...|.++ +++|.+++|||++++.+.+        .....+.|+++++++|+|+||.||++||||.+++++.++||+||
T Consensus         2 ~~~~s~~~-~~~a~~~~p~g~~~~~~~~--------~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p   72 (428)
T PRK12389          2 NFTKSEAL-HQEALEHIVGGVNSPSRSY--------KAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHP   72 (428)
T ss_pred             CChhhHHH-HHHHHhhCCCCCCCccccc--------cccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCH
Confidence            45678888 9999999999998766532        11122578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      +|.+|+.+|++++.+  ..+.++...+|+++|++..+ .++++|++||+||++.|+|+||.|++         |.+||.+
T Consensus        73 ~v~~ai~~q~~~~~~--~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tg---------r~~ii~~  141 (428)
T PRK12389         73 HITKAITEAAENGVL--YGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTG---------RTKIIKF  141 (428)
T ss_pred             HHHHHHHHHHHhCCc--cCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEE
Confidence            999999999998654  23567779999999999875 78999999999999999999999974         8899999


Q ss_pred             cCCccCChhhhhhccCCCCcC------CCCc-CCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHH
Q 013008          197 TNSFHGRTMGALALTSKEHYR------SPFE-PVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      +++|||++.++++.++.....      .++. +..+++..+|+||++.++++++  .+++++||+||+++++|.++|+++
T Consensus       142 ~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~  221 (428)
T PRK12389        142 AGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPG  221 (428)
T ss_pred             CCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHH
Confidence            999999999998877543211      1111 2335778889999999999996  457999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---CCccCC
Q 013008          268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGST  344 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t  344 (451)
                      ||++|+++|++||++||+|||+||| |+|.+++++++|+.||++|+||+++||+|+|++++++++++.+.+   ..+.+|
T Consensus       222 yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T  300 (428)
T PRK12389        222 FLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGT  300 (428)
T ss_pred             HHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccC
Confidence            9999999999999999999999999 998888888999999999999999999999999999999998853   357889


Q ss_pred             CCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCccee-cccceeEEEEecC---------------
Q 013008          345 FAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDV-RGLGLIIGIEFDV---------------  394 (451)
Q Consensus       345 ~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v-~g~G~~~~~~~~~---------------  394 (451)
                      |++||++|+|++++|+++++++++++              +.+++|.+..+ ++.| ++++++..               
T Consensus       301 ~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~  379 (428)
T PRK12389        301 MAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGE  379 (428)
T ss_pred             CccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHH
Confidence            99999999999999999988777666              23446755555 7777 66787721               


Q ss_pred             ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          395 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       395 ~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ....+.+.|+++||++.+.+. +.  +.|++++|+|||+++++++++++++
T Consensus       380 ~~~~~~~~l~~~Gv~~~~~~~-~~--~~~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        380 AFGKFFKLMLNQGINLAPSKY-EA--WFLTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             HHHHHHHHHHHCCcEeecCCC-CC--eeecCCCCHHHHHHHHHHHHHHHHh
Confidence            134678889999999988654 22  4579999999999999999999875

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=8e-65  Score=513.12  Aligned_cols=367  Identities=34%  Similarity=0.553  Sum_probs=310.8

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--C
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~  155 (451)
                      +.| ++++++|+|+||.||++||||.+++++.+|||+||+|.+|+.+|++++.+... .+.+++..+|+++|++.++  .
T Consensus        13 ~~p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~   91 (447)
T PRK06917         13 PYP-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDL   91 (447)
T ss_pred             CCC-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            446 58999999999999999999999999999999999999999999998654432 3567778999999999986  5


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee----
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE----  231 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  231 (451)
                      ++++|++||+||++.|+|+|+.|++.++..   +|.+||.++++|||++.+++++++....+..+.|..+++..++    
T Consensus        92 ~~v~f~~sGsEAve~AlklAr~~~~~rg~t---~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~  168 (447)
T PRK06917         92 NWSFFVNSGSEANETAMKIAIQHFQERGIQ---GKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYC  168 (447)
T ss_pred             CEEEEeCChHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcc
Confidence            799999999999999999999987554433   5789999999999999999988776544444444433333222    


Q ss_pred             -------------CCCHHHHHHhcC---CCCeEEEEEccccCC-CCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008          232 -------------YGNIEATRKLIQ---PGKTAAVFVEPIQGE-GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR  294 (451)
Q Consensus       232 -------------~~d~~~le~~l~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  294 (451)
                                   ++|++.++++++   .+++++||+||++++ +|+++|+++||++|+++|++||+++|+|||+|||||
T Consensus       169 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGR  248 (447)
T PRK06917        169 YRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGR  248 (447)
T ss_pred             cccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCc
Confidence                         123567788876   257999999999985 678899999999999999999999999999999999


Q ss_pred             ccccccccccCCCcceeeecccccCCc-ccccccccHHHHhhccCC----CccCCCCCcHHHHHHHHHHHHHhcChHHHH
Q 013008          295 TGYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFLA  369 (451)
Q Consensus       295 ~G~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  369 (451)
                      +|++|+++++++.||++|+||+++||+ |+|++++++++++.+...    .+++||++||++|+|++++|++++++++.+
T Consensus       249 tG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~  328 (447)
T PRK06917        249 TGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPE  328 (447)
T ss_pred             ccchhhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHH
Confidence            999999999999999999999999995 999999999999988542    367899999999999999999997776665


Q ss_pred             H--------------HHhCCCCcceecccceeEEEEecC-------------ChHHHHHHHHHCCceeeecC------CC
Q 013008          370 S--------------KLARNPHVKDVRGLGLIIGIEFDV-------------SATPVVDACRDSGLLVLTAG------KG  416 (451)
Q Consensus       370 ~--------------~~~~~~~~~~v~g~G~~~~~~~~~-------------~~~~~~~~l~~~Gv~~~~~~------~~  416 (451)
                      +              +.+++|.+.++||.|+|++++|..             ....+.+.|+++||++.+.+      .+
T Consensus       329 ~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~  408 (447)
T PRK06917        329 KAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEG  408 (447)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCC
Confidence            5              345678889999999999999831             13467888999999998753      14


Q ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008          417 NVVRLVPPLIISEQELDQAVEILCKTLPVLDSN  449 (451)
Q Consensus       417 ~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~  449 (451)
                      +.+|++||+++|++|||+++++|+++++++.++
T Consensus       409 ~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~  441 (447)
T PRK06917        409 DAVIIAPPMTITYSELDELLSIFAKSVEEMMQK  441 (447)
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence            789999999999999999999999999887544

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=7.4e-65  Score=512.70  Aligned_cols=364  Identities=34%  Similarity=0.587  Sum_probs=314.3

Q ss_pred             CCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--
Q 013008           78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--  154 (451)
Q Consensus        78 ~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--  154 (451)
                      .+.|+++++++|+|+||.||++||||.+++++.+|||+||+|.+|+.+|++++.+.+. ...++...+|+++|++..+  
T Consensus        26 ~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~  105 (442)
T PRK13360         26 KKAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGG  105 (442)
T ss_pred             cCCCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCC
Confidence            3568999999999999999999999999999999999999999999999998765433 3567778999999999885  


Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCC
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN  234 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  234 (451)
                      .++|+|++||+||++.|+|+||.|++.++..   +|.+||.+.++|||++.+++++++....+..+.+..+++.++|+++
T Consensus       106 ~~~v~f~~sGseA~e~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~  182 (442)
T PRK13360        106 LNHVFFTNSGSESVDTALKIALAYHRARGEG---SRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTL  182 (442)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCc
Confidence            6899999999999999999999997544322   4778999999999999999998887666666666666666665541


Q ss_pred             ------------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          235 ------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       235 ------------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                                        +++|+++++   .+++++||+||+++++|.++++++||++|+++|++||++||+||||||||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~G  262 (442)
T PRK13360        183 DLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFG  262 (442)
T ss_pred             hhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence                              457888885   36799999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC-------CccCCCCCcHHHHHHHHHHHHHhcCh
Q 013008          294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-------DHGSTFAGSPLVCNAAIAVLDKISNP  365 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-------~~~~t~~~~~~~~aaa~aal~~~~~~  365 (451)
                      |+|++|+++++++.||++||||+++|| +|+|++++++++++.+...       .+++||++||++|++++++|++++++
T Consensus       263 rtG~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~  342 (442)
T PRK13360        263 RLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE  342 (442)
T ss_pred             CCccchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999988 8999999999999887532       36789999999999999999999877


Q ss_pred             HHHHH-----------HH--hCCCCcceecccceeEEEEecC-------ChHHHHHHHHHCCceeeecCCCCEEEEeCCC
Q 013008          366 AFLAS-----------KL--ARNPHVKDVRGLGLIIGIEFDV-------SATPVVDACRDSGLLVLTAGKGNVVRLVPPL  425 (451)
Q Consensus       366 ~~~~~-----------~~--~~~~~~~~v~g~G~~~~~~~~~-------~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~  425 (451)
                      ++.++           +.  .+++.+.++||.|+++++++..       .+.++...|+++||++.+.+  +.+||+||+
T Consensus       343 ~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~--~~lr~~Ppl  420 (442)
T PRK13360        343 GLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTG--DILALSPPL  420 (442)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEecC--CEEEEeCCC
Confidence            66555           11  2366778899999999988831       23568888999999998764  689999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q 013008          426 IISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++|++|||+++++|+++++++
T Consensus       421 ~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        421 IIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             ccCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999764

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=7.1e-65  Score=510.45  Aligned_cols=362  Identities=30%  Similarity=0.479  Sum_probs=312.1

Q ss_pred             eEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--CCeE
Q 013008           82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--ADRV  158 (451)
Q Consensus        82 ~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~e~v  158 (451)
                      +++++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+  .++|
T Consensus        28 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v  107 (429)
T PRK06173         28 YPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKI  107 (429)
T ss_pred             ceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEE
Confidence            468999999999999999999999999999999999999999999998765433 3567889999999999885  7899


Q ss_pred             EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCeeEeeCC----
Q 013008          159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYG----  233 (451)
Q Consensus       159 ~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----  233 (451)
                      +|++||+||++.|+|+||.|+..++.+   +|.+||.+.++|||.+.+++++++. ..++..+.+..+.+.++|++    
T Consensus       108 ~f~~sGseAve~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  184 (429)
T PRK06173        108 FFADSGSVAVEVAMKMALQYQQAKGEV---QRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKF  184 (429)
T ss_pred             EEeCCchHHHHHHHHHHHHHHHHhCCC---CCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCccc
Confidence            999999999999999999997654432   4789999999999999998887653 32444455555555555543    


Q ss_pred             -------CHHHHHHhcC--CCCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccc
Q 013008          234 -------NIEATRKLIQ--PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH  303 (451)
Q Consensus       234 -------d~~~le~~l~--~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~  303 (451)
                             +++.|++.++  .+++++||+||+ ++++|.++++++|+++|+++|++||++||+||||+||||+|++|++++
T Consensus       185 ~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~  264 (429)
T PRK06173        185 GEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEH  264 (429)
T ss_pred             chhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHh
Confidence                   4677888885  468999999997 999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceeeecccccCC-cccccccccHHHHhhccC-----CCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------
Q 013008          304 YGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-----GDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------  370 (451)
Q Consensus       304 ~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-----~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------  370 (451)
                      +|+.||++||||+++|| +|++++++++++++.+..     ..+++||++||++|++++++|++++++++.++       
T Consensus       265 ~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~  344 (429)
T PRK06173        265 AGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQ  344 (429)
T ss_pred             cCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999 699999999999998753     24778999999999999999999977666555       


Q ss_pred             ----HH--hCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          371 ----KL--ARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       371 ----~~--~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                          +.  .+++.+..+|+.|+++++++..  ....+.+.|+++|+++.+.+  +++||.||+++|++|+++++++|+++
T Consensus       345 l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~g--~~l~~~Ppl~it~~ei~~~~~~l~~~  422 (429)
T PRK06173        345 LKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRPFG--KLVYIMPPFIISPDELSQLTSGLLRV  422 (429)
T ss_pred             HHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEecC--CEEEEeCCccCCHHHHHHHHHHHHHH
Confidence                21  2466777899999999999942  35688999999999998864  78999999999999999999999999


Q ss_pred             HHHHhh
Q 013008          443 LPVLDS  448 (451)
Q Consensus       443 l~~~~~  448 (451)
                      +.++.+
T Consensus       423 l~~~~~  428 (429)
T PRK06173        423 LKQEYN  428 (429)
T ss_pred             HHHHhc
Confidence            987653

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=2.6e-64  Score=506.78  Aligned_cols=367  Identities=44%  Similarity=0.751  Sum_probs=324.4

Q ss_pred             CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCC
Q 013008           77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD  156 (451)
Q Consensus        77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e  156 (451)
                      +.+.|+++++++|+|+||.||++||||.+++++.+|||+||+|.+|+.++++++.+....+.++...+|+++|++..+.+
T Consensus        18 ~~~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~   97 (406)
T PRK12381         18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFAD   97 (406)
T ss_pred             cCCCCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCCCC
Confidence            45678999999999999999999999999999999999999999999999988644444456777899999999988889


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE  236 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  236 (451)
                      +|+|++||+|||+.|+++++.++..++..   ++.+|+.++++|||++.+++++++.+.+...+.+..+++..+++||++
T Consensus        98 ~v~~~~sGseA~e~Alk~ar~~~~~~~~~---~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  174 (406)
T PRK12381         98 RVFFCNSGAEANEAALKLARKYAHDRYGS---HKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLN  174 (406)
T ss_pred             eEEEcCCcHHHHHHHHHHHHHHHhhcCCC---CCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHH
Confidence            99999999999999999999997543322   478899999999999999988888776666677777788889999999


Q ss_pred             HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccc
Q 013008          237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP  316 (451)
Q Consensus       237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~  316 (451)
                      ++++.+. +++++|++||+++++|+++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||+
T Consensus       175 ~l~~~l~-~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~  253 (406)
T PRK12381        175 SASALID-DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKA  253 (406)
T ss_pred             HHHHhcc-CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhh
Confidence            9999996 479999999999999999899999999999999999999999999999999998888889999999999999


Q ss_pred             ccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceec
Q 013008          317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVR  382 (451)
Q Consensus       317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~  382 (451)
                      +++|+|+|++++++++++.+....+.+||++||++|+++.++|+.++++++.++              +..+++.+..++
T Consensus       254 l~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vr  333 (406)
T PRK12381        254 LGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARYGLFSEIR  333 (406)
T ss_pred             hhCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEe
Confidence            999999999999999999998767889999999999999999999876655544              122355567789


Q ss_pred             ccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          383 GLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       383 g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +.|+++++++..    ....+.+.|+++||++.+.+. +.+||+|++++|+++|++++++|+++++++..
T Consensus       334 g~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~-~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  402 (406)
T PRK12381        334 GLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGP-NVVRFAPALNISEEEITTGLDRFARACERFVS  402 (406)
T ss_pred             cCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCCC-CEEEEeCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999843    346788999999999987664 78999999999999999999999999988753

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.2e-64  Score=508.20  Aligned_cols=360  Identities=30%  Similarity=0.476  Sum_probs=308.2

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--CC
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--AD  156 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~e  156 (451)
                      .|+++++++|+|+||.||++||||.+++++.+|||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+  .+
T Consensus        22 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~  101 (422)
T PRK05630         22 RNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLD  101 (422)
T ss_pred             CCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcC
Confidence            58999999999999999999999999999999999999999999999998765433 3467778999999999875  68


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCeeEeeCC--
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYG--  233 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--  233 (451)
                      +++|++||+||++.|+|+|+.|++.++.+   +|.+||.++++|||.+.+++++++. ..++..+.|..+++.++|++  
T Consensus       102 ~v~f~~SGseA~e~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~  178 (422)
T PRK05630        102 HVFYSDSGSVSVEVAIKMALQYSKGQGHP---ERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV  178 (422)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcc
Confidence            99999999999999999999998644332   4789999999999999999988753 22334444444454444432  


Q ss_pred             ------C----HHHHHHhcCCCCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccc
Q 013008          234 ------N----IEATRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE  302 (451)
Q Consensus       234 ------d----~~~le~~l~~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~  302 (451)
                            |    .+.+++++. +++++||+||+ ++.+|.++|+++|+++|+++|++||++||+|||+|||||+|.+|+++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~-~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~  257 (422)
T PRK05630        179 RGSSPQEISEYLRSLELLID-ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATL  257 (422)
T ss_pred             cCCChHHHHHHHHHHHHHHh-hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHH
Confidence                  2    245566554 58999999996 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcceeeecccccCC-cccccccccHHHHhhccCC------CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----
Q 013008          303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----  370 (451)
Q Consensus       303 ~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----  370 (451)
                      ++++.||++|+||+++|| +|+|++++++++++.+...      .|++||++||++|++++++|+.++++++.++     
T Consensus       258 ~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g  337 (422)
T PRK05630        258 AAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIE  337 (422)
T ss_pred             hcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            999999999999999999 5999999999999987421      4789999999999999999999987766555     


Q ss_pred             ------H--HhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          371 ------K--LARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       371 ------~--~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                            +  +.++|.+.++||.|+++++++..  .+..+.+.|+++|+++.+.+  +++||.||+++|++|+|+++++|+
T Consensus       338 ~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~g--~~l~~~PpL~it~~~i~~~~~~l~  415 (422)
T PRK05630        338 AELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPVDMEEATQAAVDHGVWLRPFG--RLVYVMPPYITTSEQIAQICAALA  415 (422)
T ss_pred             HHHHHHHHHhhcCCCeeeeeccccEEEEEECCcccHHHHHHHHHHCCeEEEecC--CEEEEECCccCCHHHHHHHHHHHH
Confidence                  1  12366788899999999999942  35688899999999998764  789999999999999999999999


Q ss_pred             HHHHH
Q 013008          441 KTLPV  445 (451)
Q Consensus       441 ~~l~~  445 (451)
                      ++++.
T Consensus       416 ~al~~  420 (422)
T PRK05630        416 AAVKA  420 (422)
T ss_pred             HHHhc
Confidence            99864

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=1.4e-64  Score=511.74  Aligned_cols=382  Identities=25%  Similarity=0.395  Sum_probs=315.8

Q ss_pred             hhhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCH
Q 013008           38 VAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA  117 (451)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p  117 (451)
                      ....|.++ |++|++++|||++++.+.+.         .+.+.|+++++++|+|+||+||++||||.+++++.+|||+||
T Consensus        49 ~~~~S~~l-~~ra~~~~pgGv~~~~r~~~---------~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p  118 (474)
T PLN02482         49 TTTKSEEI-FKAAKELMPGGVNSPVRAFK---------SVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADD  118 (474)
T ss_pred             CChHHHHH-HHHHHhhCCCCCCCcchhhc---------ccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCH
Confidence            35688889 99999999999998887541         234679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      +|.+|+.+|++++.+  ....++...+|+++|++..+ .++|+|++||+||++.|+|+||+||+         |++||.+
T Consensus       119 ~v~~av~~ql~~~~~--~~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tg---------r~~Ii~~  187 (474)
T PLN02482        119 EVLAALAETMKKGTS--FGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTG---------REKIIKF  187 (474)
T ss_pred             HHHHHHHHHHhhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcC---------CCEEEEE
Confidence            999999999998654  33467778999999999986 89999999999999999999999984         8899999


Q ss_pred             cCCccCChhhhhhc--cCCCCcCCCCcC-----CCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHH
Q 013008          197 TNSFHGRTMGALAL--TSKEHYRSPFEP-----VMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       197 ~~~yhg~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      +++|||++......  ++......+..+     ..+++..+||||+++|+++++  .+++++||+||+++++|+++|+++
T Consensus       188 ~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~  267 (474)
T PLN02482        188 EGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKE  267 (474)
T ss_pred             CCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHH
Confidence            99999988554332  221111111111     123567789999999999996  457999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---CCccCC
Q 013008          268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGST  344 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t  344 (451)
                      ||++|+++|++||++||+|||++|| |+|.+++++++|+.||++||||+++||+|+|++++++++++.+.+   ..+.+|
T Consensus       268 fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T  346 (474)
T PLN02482        268 FLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGT  346 (474)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccC
Confidence            9999999999999999999999999 999989999999999999999999999999999999999998853   347889


Q ss_pred             CCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhC--CCCcceecccceeEEEEecC------------C-
Q 013008          345 FAGSPLVCNAAIAVLDKISNPAFLAS--------------KLAR--NPHVKDVRGLGLIIGIEFDV------------S-  395 (451)
Q Consensus       345 ~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~--~~~~~~v~g~G~~~~~~~~~------------~-  395 (451)
                      |++||++|+|++++|+++++++++++              +..+  +|.+  +.+.+.+++++|..            + 
T Consensus       347 ~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~--~~~v~g~~gi~f~~~~~~~~~~~~~~d~  424 (474)
T PLN02482        347 LSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMC--GGYISGMFGFFFTEGPVYNFADAKKSDT  424 (474)
T ss_pred             cchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEE--EcccceEEEEEEecCCccChhhhccCCH
Confidence            99999999999999999987766665              2222  2322  12223366776621            1 


Q ss_pred             --hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          396 --ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       396 --~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                        ...+.+.|+++||++.+.+.+.  + .|+++||++|||+++++++++++++
T Consensus       425 ~~~~~~~~~l~~~Gv~~~~~~~~~--~-~psl~ht~~dId~~l~al~~~l~~~  474 (474)
T PLN02482        425 AKFARFHRGMLEEGVYLAPSQFEA--G-FTSLAHTEEDIDFTIAAAERVLARI  474 (474)
T ss_pred             HHHHHHHHHHHHCCeEEeccCCCC--C-cCCCCCCHHHHHHHHHHHHHHHHhC
Confidence              2367888999999998865422  2 4899999999999999999998753

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.8e-64  Score=510.32  Aligned_cols=358  Identities=32%  Similarity=0.563  Sum_probs=310.2

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CC
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD  156 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e  156 (451)
                      +.|+++++++|+++||.||++||||+++ ++.+|||+||+|.+|+.+|++++.+.+..+.++...+|+++|++..+  .+
T Consensus        53 ~~~~~i~~a~G~~l~D~dG~~ylD~~g~-~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~  131 (459)
T PRK06082         53 PCLDVLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELN  131 (459)
T ss_pred             CCCceEEeeeeeEEEECCCCEEEEcccH-hhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCC
Confidence            3478999999999999999999999855 88899999999999999999987665445678889999999999986  57


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee-----
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE-----  231 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  231 (451)
                      +++|++||+||++.|+++||.|++         |.+||.++++|||++.+++++++...++..+.|..+++..+|     
T Consensus       132 ~v~f~~sGseAve~AlklAr~~tg---------r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (459)
T PRK06082        132 RVLFAPGGTSAIGMALKLARHITG---------NFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSY  202 (459)
T ss_pred             EEEECCCcHHHHHHHHHHHHHhcC---------CCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCccc
Confidence            999999999999999999999974         789999999999999999988877666666666667766554     


Q ss_pred             ---CCC--------HHHHHHhcC-CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          232 ---YGN--------IEATRKLIQ-PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       232 ---~~d--------~~~le~~l~-~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                         +++        +++|+++++ .+++++||+||+++++ .++++++||++|+++|++||++||+|||+|||||+|.+|
T Consensus       203 ~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~f  281 (459)
T PRK06082        203 RGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWF  281 (459)
T ss_pred             ccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh
Confidence               333        355788886 3579999999999985 678999999999999999999999999999999999999


Q ss_pred             cccccCCCcceeeecccccCC-cccccccccHHHHhhccCC-CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------
Q 013008          300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------  370 (451)
Q Consensus       300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------  370 (451)
                      +++++|+.||++|+||+++|| +|+|++++++++++.+... .+ +||++||++|+|++++|++++++++.++       
T Consensus       282 a~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~  360 (459)
T PRK06082        282 THQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQF  360 (459)
T ss_pred             HhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999999 6999999999988665322 34 7999999999999999999987766665       


Q ss_pred             -------HHhCCCCcceecccceeEEEEecCC----------hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHH
Q 013008          371 -------KLARNPHVKDVRGLGLIIGIEFDVS----------ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD  433 (451)
Q Consensus       371 -------~~~~~~~~~~v~g~G~~~~~~~~~~----------~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~  433 (451)
                             +.+++|.+.++||.|+|+++++..+          ...+...|+++||++.+.+. +++|++||+++|++||+
T Consensus       361 l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~-~~i~~~Ppl~it~~eid  439 (459)
T PRK06082        361 MRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQG-NVIQLSPPLIITREELT  439 (459)
T ss_pred             HHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCC-CEEEEeCCCccCHHHHH
Confidence                   3456788899999999999999311          34677888999999988654 89999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 013008          434 QAVEILCKTLPVLDSN  449 (451)
Q Consensus       434 ~~l~~l~~~l~~~~~~  449 (451)
                      ++++++++++.++.++
T Consensus       440 ~~~~~l~~~l~~~~~~  455 (459)
T PRK06082        440 QALAILEEAIAKICQD  455 (459)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999887654

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=2.1e-64  Score=503.66  Aligned_cols=362  Identities=41%  Similarity=0.680  Sum_probs=315.8

Q ss_pred             CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCC
Q 013008           77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD  156 (451)
Q Consensus        77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e  156 (451)
                      +.+.|+++++++|+++||.||++||||++++++.+|||+||+|.+|+.+++++..+.+..+++++..+|+++|.+..+.+
T Consensus        15 ~~~~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~   94 (395)
T PRK03715         15 TNRPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSCFD   94 (395)
T ss_pred             cCCCCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhccCCC
Confidence            44568899999999999999999999999999999999999999999999998766555556778899999999877788


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE  236 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  236 (451)
                      +++|++||+|||+.|+++++.+++...+    ++++||.++++|||++.+++++++...++..+.|..+++..++++|++
T Consensus        95 ~v~f~~SGseA~e~Aik~ar~~~~~~~~----~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~  170 (395)
T PRK03715         95 KVFFANSGAEANEGAIKLARKWGRKHKN----GAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIA  170 (395)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhhccCC----CCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHH
Confidence            9999999999999999999988652211    467899999999999999999988766666666767777778899999


Q ss_pred             HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccc
Q 013008          237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP  316 (451)
Q Consensus       237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~  316 (451)
                      ++++++. +++++||+||+++++|.++++++|+++|+++|++||+++|+||||+||||+|++|+++++++.||++|+||+
T Consensus       171 ~l~~~l~-~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~  249 (395)
T PRK03715        171 SVEKLIT-DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKG  249 (395)
T ss_pred             HHHHHcC-CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhh
Confidence            9999996 479999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceec
Q 013008          317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVR  382 (451)
Q Consensus       317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~  382 (451)
                      +++|+|+|+++++++++. +.+..+.+||++||++|++++++|+++++++++++              +.++++ +..++
T Consensus       250 lg~G~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-i~~vr  327 (395)
T PRK03715        250 IGGGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERG-LEGER  327 (395)
T ss_pred             hhCCcceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCC-cCeEE
Confidence            999999999999999873 44456789999999999999999999987776665              122344 66789


Q ss_pred             ccceeEEEEecCC-hHHHHHHHHHC---CceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFDVS-ATPVVDACRDS---GLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       383 g~G~~~~~~~~~~-~~~~~~~l~~~---Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |.|+|+++++..+ ...+.+.+.+.   |+++.+... +++||.|++.+|++||++++++|+++++++
T Consensus       328 G~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~~~-~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        328 GEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNAPRP-NLLRFMPALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             cceeEEEEEecCchHHHHHHHHHhccCCCEEEeecCC-CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            9999999999533 34566666666   999876654 789999999999999999999999999865

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=2.2e-64  Score=509.65  Aligned_cols=364  Identities=34%  Similarity=0.595  Sum_probs=314.7

Q ss_pred             CCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--
Q 013008           78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--  154 (451)
Q Consensus        78 ~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--  154 (451)
                      .+.|+++++++|+|+||.||++||||.+++++.+|||+||+|.+|+.+|++++.+.+. .+.++...+|+++|++..+  
T Consensus        29 ~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~  108 (445)
T PRK09221         29 KAAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGG  108 (445)
T ss_pred             CCCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC
Confidence            3568999999999999999999999999999999999999999999999998765543 3567778999999999885  


Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCC
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN  234 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  234 (451)
                      .++|+|++||+||++.|+|+|+.|++.++.+   +|.+||.++++|||++.+++++++...+...|.+..+++..+|+++
T Consensus       109 ~~~v~f~~sGseAve~AlklAr~~~~~~g~~---~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~  185 (445)
T PRK09221        109 LDHVFFTNSGSESVDTALKIALAYHRARGQG---TRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTL  185 (445)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCc
Confidence            6899999999999999999999998644322   4778999999999999999998876655555666666666555432


Q ss_pred             ------------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          235 ------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       235 ------------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                                        +++++++++   .+++++||+||+++++|.++++++||++|+++|++||++||+|||+||||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~G  265 (445)
T PRK09221        186 DLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFG  265 (445)
T ss_pred             cccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCC
Confidence                              357788775   36899999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC-------CccCCCCCcHHHHHHHHHHHHHhcCh
Q 013008          294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-------DHGSTFAGSPLVCNAAIAVLDKISNP  365 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-------~~~~t~~~~~~~~aaa~aal~~~~~~  365 (451)
                      |+|.+|+++++++.||++|+||++++| +|+|++++++++++.+...       .+++||++||++|++++++|+.++++
T Consensus       266 RtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~  345 (445)
T PRK09221        266 RLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE  345 (445)
T ss_pred             cCchhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998 8999999999999987431       36789999999999999999999877


Q ss_pred             HHHHH----------HH---hCCCCcceecccceeEEEEecC-------ChHHHHHHHHHCCceeeecCCCCEEEEeCCC
Q 013008          366 AFLAS----------KL---ARNPHVKDVRGLGLIIGIEFDV-------SATPVVDACRDSGLLVLTAGKGNVVRLVPPL  425 (451)
Q Consensus       366 ~~~~~----------~~---~~~~~~~~v~g~G~~~~~~~~~-------~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~  425 (451)
                      ++.++          .+   .++|.+.++|+.|++.++++..       .+..+.+.|+++||++.+.+  +.+||+||+
T Consensus       346 ~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~--~~lr~~Ppl  423 (445)
T PRK09221        346 DLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYTG--DTIALSPPL  423 (445)
T ss_pred             cHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeecC--CEEEEECCc
Confidence            77666          11   2457778899999999998831       13568899999999997754  789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q 013008          426 IISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++|++||++++++|+++++++
T Consensus       424 ~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        424 IIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             cCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999765

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=2.1e-64  Score=506.44  Aligned_cols=359  Identities=33%  Similarity=0.526  Sum_probs=310.4

Q ss_pred             ceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--CCe
Q 013008           81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--ADR  157 (451)
Q Consensus        81 p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~e~  157 (451)
                      |+.+++++|+++||.|||+||||.+++++.++||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+  .++
T Consensus        26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~  105 (428)
T PRK07986         26 VYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLEC  105 (428)
T ss_pred             CeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCE
Confidence            4788999999999999999999999999999999999999999999998765433 3467789999999999886  589


Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCeeEee-----
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVE-----  231 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----  231 (451)
                      ++|++||+||++.|+|++|.|++.++.    +|.+||.++++|||.+.+++++++. ..++..+.+..+++.+++     
T Consensus       106 v~f~~SGsEAve~AlklAr~~~~~~g~----~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~  181 (428)
T PRK07986        106 VFLADSGSVAVEVAMKMALQYWQAKGE----PRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSR  181 (428)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHhcCC----CCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcc
Confidence            999999999999999999998653321    4789999999999999999888653 223344555555554443     


Q ss_pred             ------CCCHHHHHHhcC--CCCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccc
Q 013008          232 ------YGNIEATRKLIQ--PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE  302 (451)
Q Consensus       232 ------~~d~~~le~~l~--~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~  302 (451)
                            ++|++++++.++  ++++++||+||+ ++.+|+++++++||++|+++|++||++||+|||++||||+|++|+++
T Consensus       182 ~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~  261 (428)
T PRK07986        182 FDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACE  261 (428)
T ss_pred             cchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeec
Confidence                  357788998886  457999999996 89999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcceeeecccccCC-cccccccccHHHHhhccCC-----CccCCCCCcHHHHHHHHHHHHHhcChHHHHH------
Q 013008          303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS------  370 (451)
Q Consensus       303 ~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~------  370 (451)
                      ++|+.||++|+||+++|| +|+|++++++++++.+...     .+++||++||++|+|++++|+.++++++.++      
T Consensus       262 ~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~  341 (428)
T PRK07986        262 HAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEA  341 (428)
T ss_pred             ccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999999999999 6999999999999998643     3789999999999999999999987766665      


Q ss_pred             -----H--HhCCCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          371 -----K--LARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       371 -----~--~~~~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                           +  +.+++.+.++||.|+++++++.  .....+.+.|+++|+++.+.+  +++||.||+++|+|||++++++|++
T Consensus       342 ~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~g--~~i~~~Ppl~it~~ei~~~~~~l~~  419 (428)
T PRK07986        342 QLREELAPLRDAPMVADVRVLGAIGVVETTRPVNMAALQRFFVEQGVWIRPFG--KLIYLMPPYIILPEQLQRLTAAVNR  419 (428)
T ss_pred             HHHHHHHHHhcCCCEEeEeccceEEEEEeCCcccHHHHHHHHHHCCcEEEecC--CEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                 1  1246778899999999999984  235678999999999998864  7899999999999999999999999


Q ss_pred             HHHH
Q 013008          442 TLPV  445 (451)
Q Consensus       442 ~l~~  445 (451)
                      ++++
T Consensus       420 ~l~~  423 (428)
T PRK07986        420 AVQD  423 (428)
T ss_pred             HHhh
Confidence            9853

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=2.3e-64  Score=509.61  Aligned_cols=381  Identities=22%  Similarity=0.285  Sum_probs=317.3

Q ss_pred             hhhccccccchhhhccCCCCCCc-chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCC
Q 013008           38 VAAASVNVEVNDAARGSAGGLGR-NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGD  116 (451)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~  116 (451)
                      +.+.|.++ +++|++++|||+.. ..+.+           ..++|+++++++|+++||+||++||||.+++++.+|||+|
T Consensus        26 ~~~~S~~l-~~ra~~~~p~g~~~~~~~~~-----------~~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~   93 (453)
T PRK07046         26 AHPRSRAL-AARAAQHLLGGVPMHWMNDW-----------PTPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSP   93 (453)
T ss_pred             cChhhHHH-HHHHHhhCCCCccccccccc-----------CCCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCC
Confidence            34577788 99999999999832 22211           0257999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      |+|.+|+.+++++..+  ....++...+|+++|++..+.++|+|++||+||++.|+|+||+||+         |++||.|
T Consensus        94 p~i~~Av~~q~~~~~~--~~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TG---------r~~ii~~  162 (453)
T PRK07046         94 APVARALAEQARRGLT--TMLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTG---------RPKILVF  162 (453)
T ss_pred             HHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhC---------CCEEEEE
Confidence            9999999999998644  3456778999999999998899999999999999999999999984         8899999


Q ss_pred             cCCccCChhhhhhc--cCCCCcCCCCc----CCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008          197 TNSFHGRTMGALAL--TSKEHYRSPFE----PVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       197 ~~~yhg~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      +++|||+++..+..  ++.......+.    .....+..+||||++++++++..+++++||+||+++++|+++|+++||+
T Consensus       163 ~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~  242 (453)
T PRK07046        163 NGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHE  242 (453)
T ss_pred             CCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHH
Confidence            99999997666542  22221111111    1224567889999999999997678999999999999999999999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---------CCc
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---------GDH  341 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---------~~~  341 (451)
                      +|+++|++||++||+|||+| | |.|.+..++++|+.||++|+||+++||+|+|++++++++++.+.+         ..+
T Consensus       243 ~lr~lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~  320 (453)
T PRK07046        243 ALRELTRRYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGI  320 (453)
T ss_pred             HHHHHHHHhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCcee
Confidence            99999999999999999999 5 466655677889999999999999999999999999999998752         136


Q ss_pred             cCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC-------------
Q 013008          342 GSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV-------------  394 (451)
Q Consensus       342 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~-------------  394 (451)
                      ++||++||++|+|++++|+++++++++++              +.++++....+++.|+++.+.+..             
T Consensus       321 ~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~  400 (453)
T PRK07046        321 GTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAAL  400 (453)
T ss_pred             CCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhccc
Confidence            78999999999999999999987776665              234566666799999998888721             


Q ss_pred             C---hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          395 S---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       395 ~---~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +   ...+...|+++||++.|.+  +.++++|+  ||++|||+++++++++++++.
T Consensus       401 ~~~~~~~~~~~~~~~Gv~~~~~~--~~~~~~p~--~t~~did~~~~~~~~~l~~~~  452 (453)
T PRK07046        401 DPELEAALHLYLLNRGVLITPFH--NMMLVCPA--TTAADVDRLVAAFDACLGELL  452 (453)
T ss_pred             CHHHHHHHHHHHHHCCCEEeccc--CcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence            0   1346778889999998743  56788764  899999999999999998764

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=7.7e-64  Score=507.18  Aligned_cols=359  Identities=40%  Similarity=0.747  Sum_probs=311.0

Q ss_pred             ceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhccC--CCe
Q 013008           81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--ADR  157 (451)
Q Consensus        81 p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~--~e~  157 (451)
                      |+++++++|+++||.||++||||.+|+++.+|||+||+|.+|+.+|++++.+.+ ..+.++...+|+++|++..+  .++
T Consensus        26 ~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~  105 (433)
T PRK08117         26 NLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDC  105 (433)
T ss_pred             CceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCE
Confidence            489999999999999999999999999999999999999999999999876654 33567779999999999984  689


Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCeeEeeCC---
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYG---  233 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---  233 (451)
                      ++|++||+|||+.|+++|+.+++         +.+||.++++|||++.+++++++. ..++..+.+..+++.++|++   
T Consensus       106 v~f~~SGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (433)
T PRK08117        106 FFFSNSGAEAIEGALKLAKHVTK---------RPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCD  176 (433)
T ss_pred             EEEeCcHHHHHHHHHHHHHHhcC---------CCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccc
Confidence            99999999999999999999874         788999999999999999877653 33444455656666666554   


Q ss_pred             --------------CHHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008          234 --------------NIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT  295 (451)
Q Consensus       234 --------------d~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~  295 (451)
                                    |+++|+++++    .+++++||+||+++++|+++++++||++|+++|++||++||+||||+||||+
T Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~  256 (433)
T PRK08117        177 RCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRT  256 (433)
T ss_pred             cccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcc
Confidence                          5667777764    3579999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----
Q 013008          296 GYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----  370 (451)
Q Consensus       296 G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----  370 (451)
                      |.+++++++++.||++|+||++++|+|+|++++++++++.+....+.+||++||++|+|++++|+.++++++.++     
T Consensus       257 G~~~~~~~~gv~pDi~t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g  336 (433)
T PRK08117        257 GEWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMG  336 (433)
T ss_pred             ccchhHhhcCCCCCEeehhhhccCCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            998888889999999999999999999999999999999887667889999999999999999999876655544     


Q ss_pred             ---------HHhCCCCcceecccceeEEEEecC--------ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHH
Q 013008          371 ---------KLARNPHVKDVRGLGLIIGIEFDV--------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQEL  432 (451)
Q Consensus       371 ---------~~~~~~~~~~v~g~G~~~~~~~~~--------~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i  432 (451)
                               +.++++.+.++++.|+++++++..        ....+.+.|+++||++.+.+. ++++|+.||+++|+++|
T Consensus       337 ~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i  416 (433)
T PRK08117        337 AYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEI  416 (433)
T ss_pred             HHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHH
Confidence                     234567677899999999999831        135678889999999877543 47899999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 013008          433 DQAVEILCKTLPVLDS  448 (451)
Q Consensus       433 ~~~l~~l~~~l~~~~~  448 (451)
                      ++++++|+++++++..
T Consensus       417 ~~~~~~l~~~l~~~~~  432 (433)
T PRK08117        417 DEGLDILDEALTEYEA  432 (433)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987653

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=1.2e-63  Score=502.70  Aligned_cols=362  Identities=36%  Similarity=0.581  Sum_probs=314.5

Q ss_pred             cccCCC-CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhh
Q 013008           74 VGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVA  151 (451)
Q Consensus        74 ~~~~~~-~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~  151 (451)
                      .+.+.+ .|+++++++|++|||.||++||||.+++++.++||+||+|.+|+.+|++++.+... .+.+++..+|+++|++
T Consensus        15 ~~~~~~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~   94 (421)
T PRK09792         15 PRGVGVMCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINA   94 (421)
T ss_pred             ccccccCCCeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHH
Confidence            334433 37899999999999999999999999999999999999999999999998665422 3467778999999999


Q ss_pred             ccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCe
Q 013008          152 CSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGV  227 (451)
Q Consensus       152 ~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~  227 (451)
                      ..+   .++++|++||+||++.|+|+||.+|+         +.+||.++++|||++.+++++++. ..++.++.+..+++
T Consensus        95 ~~p~~~~~~~~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~  165 (421)
T PRK09792         95 LAPVSGQAKTAFFTTGAEAVENAVKIARAHTG---------RPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSV  165 (421)
T ss_pred             hCCCCCCceEEEeCChHHHHHHHHHHHHHhcC---------CCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCc
Confidence            875   37999999999999999999999874         778999999999999999988764 23455565665667


Q ss_pred             eEeeCC----------CHHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          228 NFVEYG----------NIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       228 ~~~~~~----------d~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                      ..+|++          +++.++++++    .+++++||+||+++++|..+++++|+++|+++|++||++||+|||++|||
T Consensus       166 ~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~g  245 (421)
T PRK09792        166 YHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFA  245 (421)
T ss_pred             EEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            666663          4578888886    35799999999999999988999999999999999999999999999999


Q ss_pred             cccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---
Q 013008          294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---  370 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---  370 (451)
                      |+|.+++++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++|+|++++++.+++++++++   
T Consensus       246 r~G~~~a~~~~~~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~  325 (421)
T PRK09792        246 RTGKLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQ  325 (421)
T ss_pred             CCCchhHHHhcCCCCcEEEeehhhcCCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999987777889999999999999999999987766655   


Q ss_pred             -----------HHhCCCCcceecccceeEEEEecC---------ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCH
Q 013008          371 -----------KLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISE  429 (451)
Q Consensus       371 -----------~~~~~~~~~~v~g~G~~~~~~~~~---------~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~  429 (451)
                                 +.+++|.+..++|.|+++++++..         ....+++.|+++||++.+.+. ++.+||.||+++++
T Consensus       326 ~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~  405 (421)
T PRK09792        326 LGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPD  405 (421)
T ss_pred             HHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCH
Confidence                       345678788899999999999942         135688899999999976443 58999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013008          430 QELDQAVEILCKTLP  444 (451)
Q Consensus       430 e~i~~~l~~l~~~l~  444 (451)
                      +++++++++|++++.
T Consensus       406 ~ei~~~~~~l~~~l~  420 (421)
T PRK09792        406 AQFDAAMKILQDALS  420 (421)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999874

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-63  Score=501.59  Aligned_cols=355  Identities=37%  Similarity=0.619  Sum_probs=309.3

Q ss_pred             ceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC---CC
Q 013008           81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF---AD  156 (451)
Q Consensus        81 p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~e  156 (451)
                      |+++++++|+|+||.||++||||.+++++.+|||+||+|.+|+.+|++++.+... .+.++...+|+++|++..+   .+
T Consensus        23 p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~  102 (421)
T PRK06777         23 DFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPA  102 (421)
T ss_pred             CeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCc
Confidence            7899999999999999999999999999999999999999999999998765422 2456778999999999875   57


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCeeEeeCCC-
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYGN-  234 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d-  234 (451)
                      +++|++||+||++.|+|+||.+|+         |.+||.++++|||++.+++++++. ..++..+.|..+++..++++| 
T Consensus       103 ~~~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~  173 (421)
T PRK06777        103 KTAFFTTGAEAVENAVKIARAYTG---------RPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNE  173 (421)
T ss_pred             eEEEeCCcHHHHHHHHHHHHHhhC---------CCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc
Confidence            999999999999999999999974         788999999999999999988764 234445556666666666654 


Q ss_pred             ---------HHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc
Q 013008          235 ---------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH  301 (451)
Q Consensus       235 ---------~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~  301 (451)
                               ++.++++++    ++++++||+||+++++|..+++++||++|+++|++||++||+||||+||||+|.++++
T Consensus       174 ~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~  253 (421)
T PRK06777        174 LHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAM  253 (421)
T ss_pred             ccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhh
Confidence                     667888874    3679999999999999998999999999999999999999999999999999998888


Q ss_pred             cccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------
Q 013008          302 EHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------  370 (451)
Q Consensus       302 ~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------  370 (451)
                      +++++.||++++||++++|+|+|++++++++++.+....+.+||++||++|+|++++|+.++++++.++           
T Consensus       254 ~~~~~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~  333 (421)
T PRK06777        254 EYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEV  333 (421)
T ss_pred             hhcCCCCCEEeeehhhcCCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987777889999999999999999999877766655           


Q ss_pred             ---HHhCCCCcceecccceeEEEEecCC---------hHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHH
Q 013008          371 ---KLARNPHVKDVRGLGLIIGIEFDVS---------ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       371 ---~~~~~~~~~~v~g~G~~~~~~~~~~---------~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~  437 (451)
                         +..++|.+..+++.|+|+++++..+         ...+.+.|+++||++.|++. ++++||.||+++++++++++++
T Consensus       334 L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~  413 (421)
T PRK06777        334 LEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALN  413 (421)
T ss_pred             HHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHH
Confidence               2345677888999999999988321         24466667899999998753 5799999999999999999999


Q ss_pred             HHHHHHH
Q 013008          438 ILCKTLP  444 (451)
Q Consensus       438 ~l~~~l~  444 (451)
                      +|++++.
T Consensus       414 ~l~~~l~  420 (421)
T PRK06777        414 ILTRLLA  420 (421)
T ss_pred             HHHHHHh
Confidence            9999874

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-63  Score=502.27  Aligned_cols=371  Identities=43%  Similarity=0.709  Sum_probs=315.0

Q ss_pred             HHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHH
Q 013008           64 EVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIP  141 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~  141 (451)
                      ++.+...++..+.+. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+.+|++++.+.+. .+.++.
T Consensus        19 ~l~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~   98 (441)
T PRK05769         19 EIIERDEKYLAQSTRRWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEP   98 (441)
T ss_pred             HHHHHHHHhhCcccccCCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCHH
Confidence            333333344444442 468999999999999999999999999999999999999999999999998765433 345777


Q ss_pred             HHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcC
Q 013008          142 QIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYR  217 (451)
Q Consensus       142 ~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~  217 (451)
                      ..+|+++|++..+   .++|+|++||+||++.|+|+||.||+         |++||.++++|||++.+++++++. ...+
T Consensus        99 ~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tg---------r~~Ii~~~~~yHG~t~~~ls~t~~~~~~~  169 (441)
T PRK05769         99 AVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTG---------RKYIIAFLGAFHGRTYGSLSLTASKPVQR  169 (441)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhC---------CCeEEEECCCcCCccHHHHHhcCCCcccc
Confidence            8999999999885   57999999999999999999999974         789999999999999999887653 3344


Q ss_pred             CCCcCCCCCeeEeeCCC------------------HHHHHH-hcC----CCCeEEEEEccccCCCCccccCHHHHHHHHH
Q 013008          218 SPFEPVMPGVNFVEYGN------------------IEATRK-LIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD  274 (451)
Q Consensus       218 ~~~~~~~~~~~~~~~~d------------------~~~le~-~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~  274 (451)
                      ..+.|..+++..+++++                  ++.+++ +++    .+++++||+||+++++|+++++++||++|++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~  249 (441)
T PRK05769        170 KGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRK  249 (441)
T ss_pred             cCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHH
Confidence            55666667777666532                  244666 332    4689999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHH
Q 013008          275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNA  354 (451)
Q Consensus       275 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aa  354 (451)
                      +|++||+++|+|||++||||+|.+++++++++.||+++|||++++|+|+|++++++++++.+ ...+++||++||++|++
T Consensus       250 l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~-~~~~~~T~~g~p~~~aa  328 (441)
T PRK05769        250 LADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFLP-PGSHANTFGGNPVAAAA  328 (441)
T ss_pred             HHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCCcccEEEEEehhhhhcC-CCCCCCCCCcCHHHHHH
Confidence            99999999999999999999999989999999999999999999999999999999998654 35688999999999999


Q ss_pred             HHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC--------hHHHHHHHHHCCceeee
Q 013008          355 AIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS--------ATPVVDACRDSGLLVLT  412 (451)
Q Consensus       355 a~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~--------~~~~~~~l~~~Gv~~~~  412 (451)
                      ++++|+++++ ++.++              +.++++.+..++|.|+++++++..+        ...+.+.|+++|+++.+
T Consensus       329 a~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~  407 (441)
T PRK05769        329 ALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLG  407 (441)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEec
Confidence            9999999977 76665              3345777888999999999999321        34678889999999988


Q ss_pred             cCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          413 AGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       413 ~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .+. +.+||+|++++|++|||+++++|+++++++
T Consensus       408 ~~~-~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        408 AGK-SAIRIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             CCC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            765 789999999999999999999999999764

>PLN02624 ornithine-delta-aminotransferase

Probab=100.00  E-value=2.9e-63  Score=505.84  Aligned_cols=394  Identities=34%  Similarity=0.556  Sum_probs=342.9

Q ss_pred             hhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhh
Q 013008           50 AARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV  129 (451)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~  129 (451)
                      ..++...++++.++.+++...++..+.|.+.|+++++++|+|+||.||++||||++++++.++||+||+|++|+.+++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~  106 (474)
T PLN02624         27 LPEGSAPSLSDSSAHLIELEEKYSAHNYHPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEK  106 (474)
T ss_pred             CCCCCCCCCCcchHHHHHHHHHhhccccCCCCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence            34455566778888999888888888888889999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh
Q 013008          130 LTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA  209 (451)
Q Consensus       130 ~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~  209 (451)
                      +.+.+..+.++...+|+++|++.++.++++|++||+||++.|+++++.++....+. ..++.+||.+.++|||++.++++
T Consensus       107 ~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~-~~~~~~ii~~~~~yHG~t~~~~s  185 (474)
T PLN02624        107 LTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGI-PKNEAIIVSCCGCFHGRTLAAIS  185 (474)
T ss_pred             cCCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCC-CCCCcEEEEECCCcCCCCHHHhh
Confidence            77665556778899999999999988999999999999999999999976322110 00245799999999999999999


Q ss_pred             ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEec
Q 013008          210 LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE  287 (451)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE  287 (451)
                      +++.+.....|.|..+++.+++++|++.++++++  .+++++|++||+++++|.++++++||++|+++|++||++||+||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DE  265 (474)
T PLN02624        186 MSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADE  265 (474)
T ss_pred             cCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence            8887766666778888889999999999999996  35799999999999999999999999999999999999999999


Q ss_pred             cccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChH
Q 013008          288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA  366 (451)
Q Consensus       288 v~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~  366 (451)
                      ||+||||+|.+++++++++.||+++|||++++| +|+|++++++++++.+.+..+++||++||++++++.++|+.+++++
T Consensus       266 v~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~  345 (474)
T PLN02624        266 IQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEK  345 (474)
T ss_pred             cccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhch
Confidence            999999999988888889999999999999987 8999999999999988777788999999999999999999887655


Q ss_pred             HHHH--------------HHhCCC-CcceecccceeEEEEecC------ChHHHHHHHHHCCceeeecCCCCEEEEeCCC
Q 013008          367 FLAS--------------KLARNP-HVKDVRGLGLIIGIEFDV------SATPVVDACRDSGLLVLTAGKGNVVRLVPPL  425 (451)
Q Consensus       367 ~~~~--------------~~~~~~-~~~~v~g~G~~~~~~~~~------~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~  425 (451)
                      +.++              +.++++ .+..+++.|+++.++++.      .+.++++.|+++||++.|.+. +.+||+|++
T Consensus       346 l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~~-~~lR~~p~l  424 (474)
T PLN02624        346 LAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHD-TIIRLAPPL  424 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCCC-CEEEEECCc
Confidence            4433              223455 466789999999998842      145788899999999998765 889999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 013008          426 IISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .+|+++|++++++|+++++.
T Consensus       425 ~~t~e~id~~l~~L~~~l~~  444 (474)
T PLN02624        425 SISEDELQECSKALSDVLEH  444 (474)
T ss_pred             cCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998865

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.3e-63  Score=499.97  Aligned_cols=375  Identities=34%  Similarity=0.600  Sum_probs=318.4

Q ss_pred             HHHHHHHHhcccccCC--CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCC
Q 013008           63 KEVMEAEKKLLVGTYN--RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYS  139 (451)
Q Consensus        63 ~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~  139 (451)
                      .++++++.++..+.|.  ..|+++++++|+||||.||++||||.+|+++.+|||+||+|.+|+.+|++++.+.... +.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~   83 (443)
T PRK08360          4 LEIIERYSKVISPANRVTYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFP   83 (443)
T ss_pred             HHHHHHHHHhcccccccccCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccccCc
Confidence            3444455555555553  5689999999999999999999999999999999999999999999999987655332 346


Q ss_pred             HHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-Cc
Q 013008          140 IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HY  216 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~  216 (451)
                      +...+|+++|++..+  .++|+|++||+||++.|+|+||.||+         |.+|+.+.++|||++.+++++++.. .+
T Consensus        84 ~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tg---------r~~ii~~~~~yHG~t~~a~s~~~~~~~~  154 (443)
T PRK08360         84 VEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTK---------RRKILSYLRSYYGSTYGAMSLTGLDFPV  154 (443)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcC---------CCeEEEEeCCcCCcCHHHHHhcCCCccc
Confidence            778999999999986  47999999999999999999999974         7899999999999999998877632 23


Q ss_pred             CCCCcCCCCCeeEeeCCC-----------------HHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHH
Q 013008          217 RSPFEPVMPGVNFVEYGN-----------------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA  275 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l  275 (451)
                      +..+.+ .+++.++|+++                 ++.++++++    .+++++||+||+++++|.++++++|+++|+++
T Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l  233 (443)
T PRK08360        155 RALVGE-LSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKI  233 (443)
T ss_pred             ccCCCC-CCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            334444 45566666543                 455667664    36799999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHH
Q 013008          276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAA  355 (451)
Q Consensus       276 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa  355 (451)
                      |++||++||+||||+||||+|.+++++++++.||++++||++++|+|+|++++++++++.+....+.+|+++||++|+++
T Consensus       234 ~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa  313 (443)
T PRK08360        234 LDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAA  313 (443)
T ss_pred             HHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHH
Confidence            99999999999999999999998888888999999999999999999999999999999987666888999999999999


Q ss_pred             HHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCceee
Q 013008          356 IAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVL  411 (451)
Q Consensus       356 ~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~  411 (451)
                      +++|+.++++++.++              +.+++|.+.+++|.|+|++++|..          .+..+...|+++|+++.
T Consensus       314 ~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~  393 (443)
T PRK08360        314 LAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVT  393 (443)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEe
Confidence            999999877666655              234577788999999999999831          13468888999999987


Q ss_pred             ecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          412 TAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       412 ~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +.+. +.+|+.||+++|++||++++++|++++++++.
T Consensus       394 ~~~~-~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~  429 (443)
T PRK08360        394 FFSG-NVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE  429 (443)
T ss_pred             ecCC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            6544 88999999999999999999999999988753

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=2.3e-63  Score=501.49  Aligned_cols=358  Identities=37%  Similarity=0.606  Sum_probs=309.8

Q ss_pred             CCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--
Q 013008           78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--  154 (451)
Q Consensus        78 ~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--  154 (451)
                      .++|+++++++|++|||.||++||||.+++++.++||+||+|.+|+.+|++++.+... ...++...+|+++|++..+  
T Consensus        13 ~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~   92 (420)
T TIGR00700        13 VTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGS   92 (420)
T ss_pred             CCCCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCC
Confidence            4579999999999999999999999999999999999999999999999998765433 2456678999999999875  


Q ss_pred             -CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-CcCCCCcCCCCCeeEeeC
Q 013008          155 -ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       155 -~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  232 (451)
                       .++++|++||+||++.|+|+||.||+         |.+||.++++|||++.+++++++.. .+..++.|..+++..+++
T Consensus        93 ~~~~v~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (420)
T TIGR00700        93 GPKKSVFFNSGAEAVENAVKIARSYTG---------RPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPL  163 (420)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHhcC---------CCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCC
Confidence             47999999999999999999999974         7789999999999999999887642 344455565666665554


Q ss_pred             C----------------CHHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          233 G----------------NIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       233 ~----------------d~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                      +                +++.+++++.    ++++++||+||+++++|.++++++|+++|+++|++||++||+||||+||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~  243 (420)
T TIGR00700       164 PYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGF  243 (420)
T ss_pred             CccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence            3                2567777763    4689999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--  370 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--  370 (451)
                      ||+|.+++++++++.||+++|||++++|+|+|++++++++++.+....+.+||++||++|++++++|+.++++++.++  
T Consensus       244 gr~g~~~a~~~~~~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~  323 (420)
T TIGR00700       244 ARTGAMFACEHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERAR  323 (420)
T ss_pred             cccchhHHHhhcCCCCCEEEeeccccCCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHH
Confidence            999998888999999999999999999999999999999999987777889999999999999999999877666555  


Q ss_pred             ------------HHhCCCCcceecccceeEEEEec-C--------ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCC
Q 013008          371 ------------KLARNPHVKDVRGLGLIIGIEFD-V--------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIIS  428 (451)
Q Consensus       371 ------------~~~~~~~~~~v~g~G~~~~~~~~-~--------~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t  428 (451)
                                  +.+++|.+..+++.|+++++++. .        ....+.+.|+++||++.|++. ++++||.|+++++
T Consensus       324 ~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~  403 (420)
T TIGR00700       324 QIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIG  403 (420)
T ss_pred             HHHHHHHHHHHHHHhhCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcC
Confidence                        33456777889999999999882 1        134567777899999998653 5799999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013008          429 EQELDQAVEILCKTLP  444 (451)
Q Consensus       429 ~e~i~~~l~~l~~~l~  444 (451)
                      +++|++++++|+++++
T Consensus       404 ~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       404 DELLSEGLDILCAILA  419 (420)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999999874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=6.3e-63  Score=502.01  Aligned_cols=381  Identities=33%  Similarity=0.598  Sum_probs=317.7

Q ss_pred             chHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 013008           61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY  138 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~  138 (451)
                      .++++.++..++....+. ..|+++++++|+||||.|||+||||.+++++.++||+||+|.+|+.+|++++.+.. ..+.
T Consensus        16 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~   95 (451)
T PRK06918         16 KAASLLERRQNIVPKGVSNGIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVMM   95 (451)
T ss_pred             CHHHHHHHHHHhhccccccCCCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccccccc
Confidence            334444444444444332 34789999999999999999999999999999999999999999999999876543 2345


Q ss_pred             CHHHHHHHHHHhhccC--C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-C
Q 013008          139 SIPQIELAKRLVACSF--A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-E  214 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~--~-e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~  214 (451)
                      ++...+|+++|++..+  . ++|+|++||+||++.|+|+||.||+         |.+||.++++|||++.+++++++. .
T Consensus        96 ~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~ls~~~~~~  166 (451)
T PRK06918         96 YEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTK---------RQGIISFSRGFHGRTLMTMTMTSKVK  166 (451)
T ss_pred             cHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhC---------CCcEEEECCCcCccchhhhhhcCCCc
Confidence            7779999999999986  2 6999999999999999999999984         788999999999999999988764 3


Q ss_pred             CcCCCCcCCCCCeeEeeCCC-----------------HHHHHHhc----CCCCeEEEEEccccCCCCccccCHHHHHHHH
Q 013008          215 HYRSPFEPVMPGVNFVEYGN-----------------IEATRKLI----QPGKTAAVFVEPIQGEGGIYSATKEFLQFLR  273 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l----~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~  273 (451)
                      .++..+.|..+++..+|+++                 ++.+++.+    .++++++||+||+++++|.++++++|+++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~  246 (451)
T PRK06918        167 PYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVR  246 (451)
T ss_pred             cccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHH
Confidence            34444556666666665542                 22344443    3468999999999999999999999999999


Q ss_pred             HHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHH
Q 013008          274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCN  353 (451)
Q Consensus       274 ~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~a  353 (451)
                      ++|++||++||+||||+||||+|.+++++++++.||+++|||++++|+|+|++++++++++.+....+.+||++||++|+
T Consensus       247 ~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~a  326 (451)
T PRK06918        247 NICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCA  326 (451)
T ss_pred             HHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHH
Confidence            99999999999999999999999988888999999999999999999999999999999999877778899999999999


Q ss_pred             HHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec------C----ChHHHHHHHHHCCce
Q 013008          354 AAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD------V----SATPVVDACRDSGLL  409 (451)
Q Consensus       354 aa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~------~----~~~~~~~~l~~~Gv~  409 (451)
                      ++.++|+.++++++.++              +.++++.+..+++.|+++++++.      .    ....+.+.|+++||+
T Consensus       327 aa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvl  406 (451)
T PRK06918        327 AALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLL  406 (451)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeE
Confidence            99999999876655544              23456777789999999998872      1    134577778899999


Q ss_pred             eeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008          410 VLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS  450 (451)
Q Consensus       410 ~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~  450 (451)
                      +.|++. ++++||.||+++++++|++++++|+++++++.+..
T Consensus       407 v~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~~~  448 (451)
T PRK06918        407 LLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQACYEKA  448 (451)
T ss_pred             EeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            988643 57899999999999999999999999998876553

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=2.2e-63  Score=499.25  Aligned_cols=362  Identities=35%  Similarity=0.556  Sum_probs=310.9

Q ss_pred             cccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhh
Q 013008           74 VGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVA  151 (451)
Q Consensus        74 ~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~  151 (451)
                      ...|. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+|+++|+++..+... .+.++...+|+++|++
T Consensus        10 ~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~   89 (412)
T TIGR02407        10 VRSYCRSFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNE   89 (412)
T ss_pred             HhccCCCCCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHH
Confidence            33443 468999999999999999999999999999999999999999999999987544322 2456778999999998


Q ss_pred             cc--C--C-CeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC
Q 013008          152 CS--F--A-DRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP  225 (451)
Q Consensus       152 ~~--~--~-e~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  225 (451)
                      ..  +  . ++++| ++||+||++.|+|+||.+++         |.+||.++++|||++.+++++++...++..+.+..+
T Consensus        90 ~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~  160 (412)
T TIGR02407        90 IILKPRGLDYKVQFPGPTGTNAVESALKLARKVTG---------RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLS  160 (412)
T ss_pred             hccCccCCCceEEEeCCCchHHHHHHHHHHhhhcC---------CCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCC
Confidence            74  2  2 35666 59999999999999999874         789999999999999999998876666666666666


Q ss_pred             CeeEeeCC--------CHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          226 GVNFVEYG--------NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       226 ~~~~~~~~--------d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                      ++.++|++        +++.++++++.     +++++||+||+++++|.++++++||++|+++|++||++||+|||+|||
T Consensus       161 ~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~  240 (412)
T TIGR02407       161 NVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGC  240 (412)
T ss_pred             CeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence            77778874        47788888862     468999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccccCCCcceeeecccccC-CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-hcChHHHHH
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-ISNPAFLAS  370 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~~~~~~~  370 (451)
                      ||+|++|+++++++.||++++||++++ |+|+|++++++++ +.+....+.+||++||++|+++.++|+. ++++++.++
T Consensus       241 GRtG~~~a~~~~~v~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~  319 (412)
T TIGR02407       241 GRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKA  319 (412)
T ss_pred             CccchhHHhcccCCCCCEEEechhccCCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHH
Confidence            999999999999999999999999998 8999999999887 6666567889999999999999999995 777666555


Q ss_pred             --------------HHhCCC-CcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHH
Q 013008          371 --------------KLARNP-HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQEL  432 (451)
Q Consensus       371 --------------~~~~~~-~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i  432 (451)
                                    +.++++ .+..+++.|+++++++..  ....+.+.|+++||++.+.+. ++.+||.||+++|++|+
T Consensus       320 ~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i  399 (412)
T TIGR02407       320 VQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETL  399 (412)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEEecChHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHH
Confidence                          234566 467899999999999943  356788999999999987653 47899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013008          433 DQAVEILCKTLPV  445 (451)
Q Consensus       433 ~~~l~~l~~~l~~  445 (451)
                      ++++++|++++++
T Consensus       400 ~~~~~~l~~~l~~  412 (412)
T TIGR02407       400 QQGLDILEQAVEE  412 (412)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999863

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=5e-63  Score=499.74  Aligned_cols=363  Identities=34%  Similarity=0.562  Sum_probs=314.2

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--C
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~  155 (451)
                      +.|+++++++|+||||.||++||||.+++++.+|||+||+|.+|+++|++++.+... .+.++...+|+++|++..+  .
T Consensus        23 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~  102 (423)
T PRK05964         23 PPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGL  102 (423)
T ss_pred             CCCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            358999999999999999999999999999999999999999999999998765433 3567778999999999885  6


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC--C
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--G  233 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  233 (451)
                      ++++|++||+||++.|+|++|.|+..++..   +|.+||.++++|||++.+++++++...+...+.+..+++.++++  +
T Consensus       103 ~~v~f~~sGseA~e~A~klar~~~~~~~~~---~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (423)
T PRK05964        103 DHVFFSDSGSVAVEVALKMALQYWRNRGEP---GRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPD  179 (423)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcc
Confidence            899999999999999999999997554432   58899999999999999999888765555555555555555554  4


Q ss_pred             C-----HHHHHHhcC--CCCeEEEEEcc-ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccC
Q 013008          234 N-----IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG  305 (451)
Q Consensus       234 d-----~~~le~~l~--~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~  305 (451)
                      |     +++++++++  .+++++||+|| +++++|+++++++||++|+++|++||++||+||||+||||+|.++++++++
T Consensus       180 d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~  259 (423)
T PRK05964        180 GYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAG  259 (423)
T ss_pred             hhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcC
Confidence            5     888898885  46899999999 699999999999999999999999999999999999999999988889999


Q ss_pred             CCcceeeecccccCC-cccccccccHHHHhhccCC------CccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------
Q 013008          306 IFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------  370 (451)
Q Consensus       306 ~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------  370 (451)
                      +.||++++||+++|| +|+|++++++++++.+...      .+++||++||++++|++++|+.++++++.++        
T Consensus       260 v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l  339 (423)
T PRK05964        260 VSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGL  339 (423)
T ss_pred             CCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999988 8999999999999987431      4678999999999999999999887777666        


Q ss_pred             ---HH--hCCCCcceecccceeEEEEecC-----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          371 ---KL--ARNPHVKDVRGLGLIIGIEFDV-----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       371 ---~~--~~~~~~~~v~g~G~~~~~~~~~-----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                         +.  .++|.+..+++.|+++++++..     ....+.+.|+++||++.+.+  +.+||+|++.+|++|||+++++|+
T Consensus       340 ~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~--~~lR~~p~l~~t~edId~~v~~l~  417 (423)
T PRK05964        340 AEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLG--NTIYLMPPYIITAEELDRITDAIV  417 (423)
T ss_pred             HHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecC--CEEEEeCCcccCHHHHHHHHHHHH
Confidence               11  2356677789999999999942     25678899999999998864  689999999999999999999999


Q ss_pred             HHHHHH
Q 013008          441 KTLPVL  446 (451)
Q Consensus       441 ~~l~~~  446 (451)
                      ++++++
T Consensus       418 ~al~~~  423 (423)
T PRK05964        418 EVADEL  423 (423)
T ss_pred             HHHhhC
Confidence            999764

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=4.2e-63  Score=497.16  Aligned_cols=381  Identities=20%  Similarity=0.310  Sum_probs=318.8

Q ss_pred             hhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHH
Q 013008           39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD  118 (451)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~  118 (451)
                      .++|.++ +++|.+.+|+|+.+..+.+         ....++|+++++++|++|||.||++||||.+++++.+|||+||+
T Consensus         4 ~~~s~~l-~~~a~~~~p~g~~~~~~~~---------~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~   73 (433)
T PRK00615          4 IQEMTHT-FSEACQYFPGGVNSPVRAC---------RSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPK   73 (433)
T ss_pred             cHHHHHH-HHHHHhhCCCCcCCCcccc---------cccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHH
Confidence            4577788 9999999999998887742         12236799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       119 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      |.+|+.+++++...  ....++...+|+++|.+..+  .++|+|++||+||++.|+|+||.||+         |.+||.+
T Consensus        74 v~~ai~~q~~~~~~--~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tg---------r~~ii~~  142 (433)
T PRK00615         74 ICDAIQQGAERGTS--YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITG---------RSIIIKF  142 (433)
T ss_pred             HHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhC---------CCEEEEE
Confidence            99999999988543  33567779999999999886  46999999999999999999999974         7899999


Q ss_pred             cCCccCCh---hhhhhccCCCCcC--CCC--cCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHH
Q 013008          197 TNSFHGRT---MGALALTSKEHYR--SPF--EPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       197 ~~~yhg~~---~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      +++|||++   ..+++.++.....  ..+  .+..+....+++||+++++++++  .+++++||+||+++++|.++|+++
T Consensus       143 ~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~  222 (433)
T PRK00615        143 LGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPG  222 (433)
T ss_pred             cCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHH
Confidence            99999998   4555554322111  111  12223445678999999999986  357999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC---CccCC
Q 013008          268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGST  344 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t  344 (451)
                      ||++|+++|++||++||+|||++|| |+|.+++++++++.||++||||++|||+|+|++++++++++.+...   .+.+|
T Consensus       223 yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T  301 (433)
T PRK00615        223 FIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGT  301 (433)
T ss_pred             HHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCC
Confidence            9999999999999999999999999 9999999999999999999999999999999999999999988532   36789


Q ss_pred             CCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhC--CCCcceecccceeEEEEecCC-------------
Q 013008          345 FAGSPLVCNAAIAVLDKISNPAFLAS--------------KLAR--NPHVKDVRGLGLIIGIEFDVS-------------  395 (451)
Q Consensus       345 ~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~--~~~~~~v~g~G~~~~~~~~~~-------------  395 (451)
                      |++||++|+|++++|+++++++++++              +.++  ++ +..++ .|+|++++|...             
T Consensus       302 ~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~-v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~  379 (433)
T PRK00615        302 LSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFP-VSLVR-YGSMFSFFFNENRPNNLAEAQLSDI  379 (433)
T ss_pred             CcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEe-eceEEEEEEeCCCCCChHHHhhCCH
Confidence            99999999999999999987766655              1122  44 55667 899999999311             


Q ss_pred             --hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          396 --ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       396 --~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                        ...+...|+++||++.+...+.   ..++..||++|||+++++++++++++
T Consensus       380 ~~~~~~~~~l~~~Gv~~~~~~~~~---~~ls~~ht~~did~~~~a~~~~~~~~  429 (433)
T PRK00615        380 EAFQTFYQSAFSKGVYLSPSPFEA---SFLSSAHSMENLDYAQNVLIDSLEKV  429 (433)
T ss_pred             HHHHHHHHHHHHCCeeecCccccc---cceecCCCHHHHHHHHHHHHHHHHHH
Confidence              2368888999999998765422   24588999999999999999999875

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=1.1e-62  Score=496.47  Aligned_cols=366  Identities=36%  Similarity=0.567  Sum_probs=311.1

Q ss_pred             cccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhh
Q 013008           74 VGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVA  151 (451)
Q Consensus        74 ~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~  151 (451)
                      .+.|. +.|+++++|+|+||||.||++||||.+++++.+|||+||+|.+|+++|+++..+... .+.++...+|+++|++
T Consensus        14 ~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~   93 (425)
T PRK09264         14 VRSYCRSFPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEE   93 (425)
T ss_pred             HhccCCCCCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence            44443 468999999999999999999999999999999999999999999999987544323 2456778999999998


Q ss_pred             cc--C--CC-eEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC
Q 013008          152 CS--F--AD-RVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP  225 (451)
Q Consensus       152 ~~--~--~e-~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  225 (451)
                      ..  +  .+ +++| ++||+||++.|+|+||.|++         |.+||.++++|||++.+++++++...++..+.+..+
T Consensus        94 ~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~  164 (425)
T PRK09264         94 TILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTG---------RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLN  164 (425)
T ss_pred             hhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcC---------CCeEEEECCccCCccHHHHHhcCCcccccCCCCCCC
Confidence            74  2  33 6766 48999999999999999974         788999999999999999998876655555666566


Q ss_pred             CeeEeeCC--------CHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          226 GVNFVEYG--------NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       226 ~~~~~~~~--------d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                      ++.++|++        |+++|+++++.     +++++||+||+++++|+++++++||++|+++|++||++||+|||||||
T Consensus       165 ~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~  244 (425)
T PRK09264        165 NVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGC  244 (425)
T ss_pred             CeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCC
Confidence            77778774        78889998852     469999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccccCCCcceeeecccccC-CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHH-HHhcChHHHHH
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL-DKISNPAFLAS  370 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~  370 (451)
                      ||+|.+++++++++.||++|+||++++ |+|+|++++++++. .+....+.+||++||+++++++++| +.++++++.++
T Consensus       245 GrtG~~~~~~~~~v~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~  323 (425)
T PRK09264        245 GRTGTFFSFERAGITPDIVTLSKSISGYGLPMALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKE  323 (425)
T ss_pred             ccccHHHHHhhcCCCCCEEEeccccCCCccceEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHH
Confidence            999999899999999999999999998 89999999999874 5655567889999999999999999 66666555554


Q ss_pred             --------------HHhCCCC-cceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHH
Q 013008          371 --------------KLARNPH-VKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQEL  432 (451)
Q Consensus       371 --------------~~~~~~~-~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i  432 (451)
                                    +.+++|. +..+++.|+++++++..  ....+.+.|+++||++.+.+. ++.+||.|++++|+++|
T Consensus       324 ~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei  403 (425)
T PRK09264        324 VKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEEL  403 (425)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHH
Confidence                          2234663 36789999999999942  356788999999999987653 47899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 013008          433 DQAVEILCKTLPVLDSN  449 (451)
Q Consensus       433 ~~~l~~l~~~l~~~~~~  449 (451)
                      ++++++|+++++++.+.
T Consensus       404 ~~~~~~l~~~l~~~~~~  420 (425)
T PRK09264        404 EEGLDILEEAVAEVLAE  420 (425)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999886543

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=100.00  E-value=3.6e-62  Score=490.37  Aligned_cols=379  Identities=36%  Similarity=0.621  Sum_probs=327.0

Q ss_pred             hHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 013008           62 NKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP  141 (451)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~  141 (451)
                      ++++.+...++....|.+.|+++++++|+|+||.||++||||.+++++.+|||+||+|.+|+.++++++.+.+....++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~   83 (396)
T PRK04073          4 SEKIIELTNHYGAHNYHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFHSDQ   83 (396)
T ss_pred             HHHHHHHHHHhcccccCCCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccccccCCHH
Confidence            44555566666666677789999999999999999999999999999999999999999999999998776554556777


Q ss_pred             HHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCc
Q 013008          142 QIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFE  221 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~  221 (451)
                      ..+|+++|++..+.++++|++||+||++.|+++++.|+....+. ..++++||.++.+|||++..++++++.+.+...+.
T Consensus        84 ~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~-~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~  162 (396)
T PRK04073         84 LGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGV-EPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFG  162 (396)
T ss_pred             HHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCC-CCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCC
Confidence            89999999998888999999999999999999999885321110 01468899999999999999998887665565666


Q ss_pred             CCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc
Q 013008          222 PVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH  301 (451)
Q Consensus       222 ~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~  301 (451)
                      +..+++..++++|++++++.+.+ ++++|++||+++++|.+.++++||++|+++|++||+++|+||+|+|||++|.++++
T Consensus       163 ~~~~~~~~~~~~d~~~l~~~i~~-~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~  241 (396)
T PRK04073        163 PMLPGIKKIPYGDLEALKAAITP-NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFAC  241 (396)
T ss_pred             CCCCCceEeCCCCHHHHHHhccc-CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHh
Confidence            77788888999999999999964 68999999999999999999999999999999999999999999999999987777


Q ss_pred             cccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008          302 EHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       302 ~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------  370 (451)
                      +.+++.||+++|||++++| +|+|++++++++++.+....+..||++||++|++++++|+.++++++.++          
T Consensus       242 ~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~  321 (396)
T PRK04073        242 DWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKE  321 (396)
T ss_pred             hhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            8889999999999999976 99999999999999987667888999999999999999998866555444          


Q ss_pred             HHhC--CCCcceecccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          371 KLAR--NPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       371 ~~~~--~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .++.  .+.+..+++.|+|+++++...+..+++.|+++||++.+.+. +++||+||+.+|+|++++++++|++++
T Consensus       322 ~L~~l~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        322 QLKEIDNPMIKEVRGRGLFIGVELNEPARPYCEALKEEGLLCKETHE-TVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             HHHhhcCCcccceecceEEEEEEecchHHHHHHHHHHCCeEEecCCC-CEEEEECCcccCHHHHHHHHHHHHHHh
Confidence            1222  24566788999999998865677899999999999987654 789999999999999999999999875

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=5.7e-62  Score=488.38  Aligned_cols=364  Identities=49%  Similarity=0.819  Sum_probs=320.0

Q ss_pred             CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCC
Q 013008           77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD  156 (451)
Q Consensus        77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e  156 (451)
                      |.+.|+++++++|+++||.||++||||.+++++.+|||+||+|.+|+.++++++.+.+..+.++...+++++|++..+.+
T Consensus        10 ~~~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~   89 (389)
T PRK01278         10 YNRADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSFAD   89 (389)
T ss_pred             cCCCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCCCC
Confidence            44678999999999999999999999999999999999999999999999988655444456777999999999988888


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE  236 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  236 (451)
                      +|+|++||+||++.|+++++.++...+..   ++++||+++++|||++..++..++.+.+...+.+..+++..++++|++
T Consensus        90 ~v~~~~sGseA~~~al~~ar~~~~~~G~~---~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  166 (389)
T PRK01278         90 KVFFTNSGAEAVECAIKTARRYHYGKGHP---ERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIE  166 (389)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHH
Confidence            99999999999999999999886432211   367999999999999999988887666555555656777788999999


Q ss_pred             HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccc
Q 013008          237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP  316 (451)
Q Consensus       237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~  316 (451)
                      ++++++++ ++++|++||+++++|..+++++++++|+++|++||++||+||||+||||+|.+++++++++.||+++|||+
T Consensus       167 ~l~~~l~~-~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~  245 (389)
T PRK01278        167 ALKAAITP-NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKG  245 (389)
T ss_pred             HHHHhhCC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehh
Confidence            99999965 79999999999999988999999999999999999999999999999999988887888999999999999


Q ss_pred             ccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCC-Cccee
Q 013008          317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNP-HVKDV  381 (451)
Q Consensus       317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~-~~~~v  381 (451)
                      +++|+|+|++++++++++.+....+.+||++||++|++++++|+.++++++.++              +.+.++ .+..+
T Consensus       246 l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v  325 (389)
T PRK01278        246 IGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEV  325 (389)
T ss_pred             ccCCcceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeE
Confidence            999999999999999999987777889999999999999999998866554333              223455 56778


Q ss_pred             cccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          382 RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       382 ~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ++.|+++++++..+..++++.|+++||++.|++. +.+||+|++++++++|++++++|++++++
T Consensus       326 ~g~G~~~~i~~~~~~~~~~~~l~~~GV~~~p~~~-~~lR~~p~~~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        326 RGKGLLLGLKCVVPNRDLVQALRDEGLLTVGAGD-NVVRLLPPLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             ecccEEEEEEEecCHHHHHHHHHHCCeEEeecCC-CEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence            9999999998865678899999999999998865 78999999999999999999999999865

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=4.1e-62  Score=534.15  Aligned_cols=370  Identities=30%  Similarity=0.483  Sum_probs=312.6

Q ss_pred             HHHHHHHhcccccCC---CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 013008           64 EVMEAEKKLLVGTYN---RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI  140 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~---~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~  140 (451)
                      .+.+...++..+++.   +.|+++++|+|+||||.||++||||.++.  .++||+||+|.+|+.+|++++... ..+.++
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~~-~~~~~~  663 (1013)
T PRK06148        587 EILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNTN-TRYLHD  663 (1013)
T ss_pred             HHHHHHHHhcCcccccccCCCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCCc-CCcCCH
Confidence            344444555555544   67999999999999999999999999985  679999999999999999986332 346678


Q ss_pred             HHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCC
Q 013008          141 PQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS  218 (451)
Q Consensus       141 ~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~  218 (451)
                      ...+|+++|++.++  .++|+|+|||+|||+.|||+||.+|+         |.+||.++++|||++.+++++++.. +..
T Consensus       664 ~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tG---------r~~ii~~~~~YHG~t~~a~s~s~~~-~~~  733 (1013)
T PRK06148        664 AIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTG---------QRDAIVLDHAYHGTTTELIDLSPYK-FNR  733 (1013)
T ss_pred             HHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcC---------CCeEEEEcCCccCCCcchhhcCchh-hcc
Confidence            89999999999886  58999999999999999999999984         7889999999999999998887632 222


Q ss_pred             CCcCC-CCCe--------eEeeCC--C-------HHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHH
Q 013008          219 PFEPV-MPGV--------NFVEYG--N-------IEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA  275 (451)
Q Consensus       219 ~~~~~-~~~~--------~~~~~~--d-------~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l  275 (451)
                      ++.+. .+++        ...|++  |       .+.+++.++     .+++++||+||+++++|.++++++||++|+++
T Consensus       734 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~l  813 (1013)
T PRK06148        734 KGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAM  813 (1013)
T ss_pred             cCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHH
Confidence            22211 1222        233454  2       134665553     35799999999999999999999999999999


Q ss_pred             HHHhCCEEEEeccccCCCcccc-cccccccCCCcceeeecccccCCcccccccccHHHHhhccCC-CccCCCCCcHHHHH
Q 013008          276 CDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG-DHGSTFAGSPLVCN  353 (451)
Q Consensus       276 ~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~-~~~~t~~~~~~~~a  353 (451)
                      |++||+++|+|||+|||||+|. +|+++++|+.|||+|+||++|||+|+|++++++++++.+..+ .+.+||++||++|+
T Consensus       814 c~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~a  893 (1013)
T PRK06148        814 VRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCA  893 (1013)
T ss_pred             HHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHH
Confidence            9999999999999999999997 899999999999999999999999999999999999998765 47899999999999


Q ss_pred             HHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC------C----hHHHHHHHHHCCce
Q 013008          354 AAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV------S----ATPVVDACRDSGLL  409 (451)
Q Consensus       354 aa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~------~----~~~~~~~l~~~Gv~  409 (451)
                      |++++|++++++++.++              +.+++|.+.+++|.|+|+++++..      .    ...+.+.|+++||+
T Consensus       894 aa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl  973 (1013)
T PRK06148        894 IGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGIL  973 (1013)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeE
Confidence            99999999988877766              446788889999999999999931      1    34578889999999


Q ss_pred             eeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          410 VLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       410 ~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +.+.+. ++++||.||+++|+++||+++++|+++++++
T Consensus       974 ~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        974 IGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             EeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            987653 5899999999999999999999999999875

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=1.4e-61  Score=486.62  Aligned_cols=375  Identities=26%  Similarity=0.389  Sum_probs=295.6

Q ss_pred             chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHH--HhhcccccCCCC
Q 013008           61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQ--ANVLTHVSNMYY  138 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~--~~~~~~~~~~~~  138 (451)
                      .++.+.++..++......++|+.+++++|+||||.||++||||++++++.++||+||+|++|+.++  ...+.+.+ .+.
T Consensus        21 ~s~~l~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~-~~~   99 (464)
T TIGR00699        21 KSKAAMKQLNEVFDARAVHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRP-ALG   99 (464)
T ss_pred             cHHHHHHHHHhhhcccCcccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcccc-cCC
Confidence            444555555554322222679999999999999999999999999999999999999999999985  33433333 255


Q ss_pred             CHHHHHHHHHHhh----ccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCC------------------CCCCCceEE
Q 013008          139 SIPQIELAKRLVA----CSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPD------------------SKEPATEFV  194 (451)
Q Consensus       139 ~~~~~~l~~~l~~----~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~------------------~~~~~~~ii  194 (451)
                      ++...+|+++|.+    ..+  .++|+|++||+|||+.|+|+|+.|++..++.                  ...++.+||
T Consensus       100 ~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii  179 (464)
T TIGR00699       100 NFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSIL  179 (464)
T ss_pred             cHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEE
Confidence            6678889999865    443  5899999999999999999999987532110                  001134899


Q ss_pred             EEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-------------------CCHHHHHHhcC--CCCeEEEEEc
Q 013008          195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------------------GNIEATRKLIQ--PGKTAAVFVE  253 (451)
Q Consensus       195 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~d~~~le~~l~--~~~~aavi~e  253 (451)
                      .++++|||++.+++++++.+...... +..+++.++|+                   +++++++++++  .+++++||+|
T Consensus       180 ~~~~syHG~t~~als~t~~~~~~~~~-~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~E  258 (464)
T TIGR00699       180 SFKGAFHGRLFGSLSTTRSKPIHKLD-IPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVE  258 (464)
T ss_pred             EECCCcCCccHHHHHhcCCccccccC-CCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            99999999999999987654322211 11122222222                   24677888885  3579999999


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCC--cceeeeccccc-CCcccccccccH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKPLA-GGLPIGAALVTE  330 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~--pdi~t~sK~lg-~G~~iG~v~~~~  330 (451)
                      |+++++|.++++++||++|+++|++||++||+|||+|||||+|.+|+++++|+.  ||++|+||+++ +|+.    +.++
T Consensus       259 Pv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG~~----~~~~  334 (464)
T TIGR00699       259 PIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYF----FHDP  334 (464)
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCCcc----ccch
Confidence            999999999999999999999999999999999999999999999999999997  99999999996 5653    2333


Q ss_pred             HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCC-Ccceec--ccceeEEEEec
Q 013008          331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNP-HVKDVR--GLGLIIGIEFD  393 (451)
Q Consensus       331 ~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~-~~~~v~--g~G~~~~~~~~  393 (451)
                       .+.......+++||++||++|+|++++|+.++++++.++              +.+++| .+..+|  |.|+|+++++.
T Consensus       335 -~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~  413 (464)
T TIGR00699       335 -AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTP  413 (464)
T ss_pred             -hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecC
Confidence             222222346889999999999999999999988776665              335578 688899  99999999984


Q ss_pred             C--ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          394 V--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       394 ~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .  ....+.+.|+++|+++.+.+. +++||.||+++|++||++++++|++++
T Consensus       414 ~~~~~~~i~~~~~~~Gvl~~~~g~-~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       414 DEAKRDKLLKKARNNGVNIGGCGV-KAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             CHHHHHHHHHHHHHCCcEEecCCC-CeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            2  256788999999999988764 789999999999999999999998864

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=100.00  E-value=6e-60  Score=475.40  Aligned_cols=366  Identities=43%  Similarity=0.771  Sum_probs=316.2

Q ss_pred             cCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC
Q 013008           76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA  155 (451)
Q Consensus        76 ~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  155 (451)
                      .|.+.|+++++++|+++||.||++||||++|+++.+|||+||+|.+|+.+++++..+....+.++...+|+++|++..+.
T Consensus        18 ~~~~~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~   97 (403)
T PRK05093         18 NYAPAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATFA   97 (403)
T ss_pred             hcCCCCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCCC
Confidence            35678999999999999999999999999999999999999999999999998754433334567788999999998888


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCH
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI  235 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  235 (451)
                      ++++|++||+|||+.|+++++.++..+...   ++++||.++.+|||++..++++++.+.+..++.+...++..+++||+
T Consensus        98 ~~~~~~~sGseA~e~a~klar~~~~~~~~~---~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  174 (403)
T PRK05093         98 ERVFFANSGAEANEAAFKLARRYACDRHGP---EKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDL  174 (403)
T ss_pred             CEEEEeCchHHHHHHHHHHHHHHHhhcCCC---CCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCH
Confidence            899999999999999999999987533222   47889999999999999888877665555555565667888999999


Q ss_pred             HHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecc
Q 013008          236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK  315 (451)
Q Consensus       236 ~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK  315 (451)
                      +++++.+. +++++|++||+++++|.++++++|+++|+++|++||+++|+||||+|||++|.+++.+++++.||+.+|||
T Consensus       175 ~~l~~~l~-~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK  253 (403)
T PRK05093        175 AAVKAVID-DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAK  253 (403)
T ss_pred             HHHHHHhc-CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecc
Confidence            99999996 46999999999999999889999999999999999999999999999999998777778899999999999


Q ss_pred             cccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHh----CCCCccee
Q 013008          316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLA----RNPHVKDV  381 (451)
Q Consensus       316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~----~~~~~~~v  381 (451)
                      ++++|+|+|++++++++++.+....+..|++++|+.|+++.++|+.+..+++.++          .++    +++.+..+
T Consensus       254 ~l~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  333 (403)
T PRK05093        254 ALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKYGVFSEI  333 (403)
T ss_pred             cccCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCeEeE
Confidence            9999999999999999999987666778999999999999999998866555544          111    23444567


Q ss_pred             cccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          382 RGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       382 ~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++.|+++++.+..    ...+++..|+++||++.+.+. +.+|++|++.+++++|++++++|+++++++
T Consensus       334 ~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~-~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        334 RGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAGP-DVLRFAPSLVIEEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             eeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecCCC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8889999998842    356899999999999998765 789999999999999999999999998764

>PRK08297 L-lysine aminotransferase; Provisional

Probab=100.00  E-value=4.9e-60  Score=477.75  Aligned_cols=362  Identities=28%  Similarity=0.456  Sum_probs=291.1

Q ss_pred             CCceEEEeecccEEEec-CCCEEEeeccCcccccCCCCCHHHHH--HHHHHHhhccc--cc-CCCCCHHHHHHHHHHhhc
Q 013008           79 RAPVVLASGKGCKLYDA-EGREYLDLSSGIAVNALGHGDADWIK--AVVDQANVLTH--VS-NMYYSIPQIELAKRLVAC  152 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~-~G~~~iD~~~~~~~~~lG~~~p~v~~--a~~~~~~~~~~--~~-~~~~~~~~~~l~~~l~~~  152 (451)
                      +.++.+++++|+|+||. ||++||||.+++++.+|||+||+|.+  |+.+|+++..+  .+ ..+.++...+|+++|++.
T Consensus        25 p~~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~  104 (443)
T PRK08297         25 DLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARV  104 (443)
T ss_pred             CcceEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhh
Confidence            34445899999999995 99999999999999999999999999  99999987542  22 235677789999999998


Q ss_pred             c-C--CCeEEecCCHHHHHHHHHHHHHHHhhh----cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC-
Q 013008          153 S-F--ADRVFFSNTGTEANEAAIKFARKFQRH----SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-  224 (451)
Q Consensus       153 ~-~--~e~v~~~~sG~eA~~~al~~a~~~~~~----~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-  224 (451)
                      . +  .++|+|++||+||++.|+|+|+.|+..    ++.+ .++|.+||.+.++|||++.+++++++.......+.+.. 
T Consensus       105 ~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~-~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~  183 (443)
T PRK08297        105 LGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGID-PALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFD  183 (443)
T ss_pred             cCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCC-CCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCC
Confidence            7 3  679999999999999999999998642    1210 01368899999999999999998876422211111110 


Q ss_pred             ------CCee------------EeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEE
Q 013008          225 ------PGVN------------FVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLV  284 (451)
Q Consensus       225 ------~~~~------------~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI  284 (451)
                            +.+.            ..+++|++++++++.  ++++++||+||+++++|+++|+++||++|+++|++||++||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI  263 (443)
T PRK08297        184 WPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLI  263 (443)
T ss_pred             ccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence                  1110            011224566777775  46899999999999999999999999999999999999999


Q ss_pred             EeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhh----cc-CCCccCCCCCcHHHHHHHHHHH
Q 013008          285 FDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASA----IN-YGDHGSTFAGSPLVCNAAIAVL  359 (451)
Q Consensus       285 ~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~----~~-~~~~~~t~~~~~~~~aaa~aal  359 (451)
                      +|||+|||||+|.+|+++++++.||++||||+++    +|++++.+++.+.    +. ...+.+||++||++|++++++|
T Consensus       264 ~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L  339 (443)
T PRK08297        264 FDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRIL  339 (443)
T ss_pred             EechhhccCccchHHHHHhcCCCCCEEEeccccc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999983    4555555554332    21 2357899999999999999999


Q ss_pred             HHhcChHHHHH--------------HHhCCCCcc-eecccceeEEEEecC--ChHHHHHHHHHCCceeeecCCCCEEEEe
Q 013008          360 DKISNPAFLAS--------------KLARNPHVK-DVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLV  422 (451)
Q Consensus       360 ~~~~~~~~~~~--------------~~~~~~~~~-~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~  422 (451)
                      ++++++++.++              +.+++|.+. +++|.|+|+++++..  ....+++.|+++||++.|.+. +.+||+
T Consensus       340 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~~~-~~lr~~  418 (443)
T PRK08297        340 EVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPTTADRDEVIRRLWEEGVLVLPCGE-RSIRFR  418 (443)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecCHHHHHHHHHHHHHCCEEEecCCC-CeEEEE
Confidence            99987776665              334567554 899999999999942  245788999999999988765 789999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          423 PPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       423 ~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ||+++|++|||+++++|+++++++
T Consensus       419 P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        419 PALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999865

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=2e-59  Score=472.04  Aligned_cols=360  Identities=31%  Similarity=0.514  Sum_probs=304.1

Q ss_pred             ceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--CCe
Q 013008           81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--ADR  157 (451)
Q Consensus        81 p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~e~  157 (451)
                      ++.+++++|.++||.||++||||++++++.+|||+||+|.+|+.++++++.+... ...++...+++++|++..+  .++
T Consensus        28 ~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~  107 (427)
T TIGR00508        28 VYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDC  107 (427)
T ss_pred             CceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCE
Confidence            4668999999999999999999999999999999999999999999998765433 3456778999999999875  589


Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-CcCCCCcCCCCCeeEee-----
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVE-----  231 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----  231 (451)
                      |+|++||+||++.|+++++.++..++.+   ++.+||.++.+|||.+.+++++++.. .++..+.+..+++..++     
T Consensus       108 v~f~~sGseA~e~AlklAr~~~~~~~~~---~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~  184 (427)
T TIGR00508       108 VFLADSGSVAVEVALKMALQYWQAKGEK---NRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNR  184 (427)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHhhCCC---CccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCcc
Confidence            9999999999999999999998644332   47899999999999999998887632 22223333333332221     


Q ss_pred             ----C--CCHHHHHHhcC--CCCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccc
Q 013008          232 ----Y--GNIEATRKLIQ--PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE  302 (451)
Q Consensus       232 ----~--~d~~~le~~l~--~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~  302 (451)
                          +  +|+++++++++  .+++++||+||+ ++++|..+++.+||++|+++|++||++||+||||+||||+|.+|+++
T Consensus       185 ~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~  264 (427)
T TIGR00508       185 FDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACE  264 (427)
T ss_pred             ccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhh
Confidence                1  25778888886  457999999997 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcceeeecccccCC-cccccccccHHHHhhccCC-----CccCCCCCcHHHHHHHHHHHHHhcChHHHHH------
Q 013008          303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS------  370 (451)
Q Consensus       303 ~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~------  370 (451)
                      ++++.||++++||+++|| +|++++++++++++.+...     .+.+||++||+++++++++|++++++++.++      
T Consensus       265 ~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~  344 (427)
T TIGR00508       265 HAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIEN  344 (427)
T ss_pred             hcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999999999999 5999999999999988642     3678999999999999999999887776655      


Q ss_pred             -----H--HhCCCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          371 -----K--LARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       371 -----~--~~~~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                           +  +..++.+..+++.|+++.+++.  .....+.+.|+++||++.+.+  +.+|++||+++|++|||++++++++
T Consensus       345 ~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~l~~~ppl~~t~~~id~~~~~l~~  422 (427)
T TIGR00508       345 QLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVEQGVWIRPFG--KLIYVMPPYIITTEQLQKLTAALIE  422 (427)
T ss_pred             HHHHHHHHhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHHCCeEEEecC--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence                 1  1234556789999999999983  346789999999999998764  6799999999999999999999999


Q ss_pred             HHHH
Q 013008          442 TLPV  445 (451)
Q Consensus       442 ~l~~  445 (451)
                      ++++
T Consensus       423 ~l~~  426 (427)
T TIGR00508       423 ALHE  426 (427)
T ss_pred             HHhc
Confidence            9864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-59  Score=513.43  Aligned_cols=373  Identities=27%  Similarity=0.466  Sum_probs=307.5

Q ss_pred             chHHHHHHHHhcccc---cCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC
Q 013008           61 NNKEVMEAEKKLLVG---TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY  137 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~---~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~  137 (451)
                      ...++.++..++...   .+.+.|+++++++|.|+||.||++||||.+++.  ++||+||+|.+|+.+|++++.+.+ .+
T Consensus       545 ~~~~l~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~~~~--~lGh~hp~v~~Ai~~q~~~l~~~~-~~  621 (972)
T PRK06149        545 DAAALLARRDASFARVQKHYYADPPQIERGWRHHLFDMAGRSYLDMVNNVT--VLGHGHPRLAAAAARQWSLLNTNS-RF  621 (972)
T ss_pred             CHHHHHHHHHHhhccchhhcccCCCeEEEeeeeEEEeCCCCEEEECCCCcc--ccCCCCHHHHHHHHHHHHhccccc-cc
Confidence            455666666555544   234568899999999999999999999998864  799999999999999999865433 34


Q ss_pred             CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008          138 YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH  215 (451)
Q Consensus       138 ~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~  215 (451)
                      .++...+|+++|++.++  .++++|++||+|||+.|+|+||++++         +.+||.++.+|||++.++.++++...
T Consensus       622 ~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tg---------r~~ii~~~~~yHG~t~ga~~~s~~~~  692 (972)
T PRK06149        622 HYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASG---------RRDVVSVLEAYHGWTVATDAVSTSIA  692 (972)
T ss_pred             cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcC---------CCeEEEEeCCCCCcChhHhhhcCCcc
Confidence            56778999999999984  78999999999999999999999974         78899999999999998877654211


Q ss_pred             cCCCC-cCCCCCee--------EeeCC--C-----HHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHH
Q 013008          216 YRSPF-EPVMPGVN--------FVEYG--N-----IEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD  274 (451)
Q Consensus       216 ~~~~~-~~~~~~~~--------~~~~~--d-----~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~  274 (451)
                      ..... .+...++.        ..+++  |     .+++++.++     .+++++||+||+++++|+++++++||++|++
T Consensus       693 ~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~  772 (972)
T PRK06149        693 DNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYA  772 (972)
T ss_pred             ccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHH
Confidence            11111 11111121        12222  2     244444432     4679999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCCCcccc-cccccccCCCcceeeecccccCCcccccccccHHHHhhccC-CCccCCCCCcHHHH
Q 013008          275 ACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-GDHGSTFAGSPLVC  352 (451)
Q Consensus       275 l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~~~~~t~~~~~~~~  352 (451)
                      +|++||+++|+|||+|||||+|+ +|+++++|+.|||+|+||++|||+|+|++++++++++.+.. ..+.+|+++||++|
T Consensus       773 lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~  852 (972)
T PRK06149        773 AVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSC  852 (972)
T ss_pred             HHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHH
Confidence            99999999999999999999997 67999999999999999999999999999999999998864 34567899999999


Q ss_pred             HHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCc
Q 013008          353 NAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGL  408 (451)
Q Consensus       353 aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv  408 (451)
                      +|++++|++++++++.++              +.+++|.+..+||.|+|+++++..          ....+++.|+++||
T Consensus       853 aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gv  932 (972)
T PRK06149        853 RIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGV  932 (972)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCe
Confidence            999999999988777666              345688899999999999999821          13568889999999


Q ss_pred             eeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          409 LVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       409 ~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ++.+.+. ++++||.||+++|++++++++++|++++.+
T Consensus       933 l~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        933 IMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             EEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            9998764 478999999999999999999999999975

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=100.00  E-value=1.8e-59  Score=475.11  Aligned_cols=380  Identities=26%  Similarity=0.399  Sum_probs=314.5

Q ss_pred             cccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHH
Q 013008           42 SVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIK  121 (451)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~  121 (451)
                      |.++ +++|.+.+|||+..+.+.+         ..-.+.|+++++++|++|||.||++||||.+|+++.++||+||+|++
T Consensus         2 s~~~-~~~~~~~~~~g~~~~~~~~---------~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~   71 (423)
T TIGR00713         2 SENL-FEEAKQVFPGGVNSPVRAF---------KSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVE   71 (423)
T ss_pred             cHHH-HHHHHhhCCCCCCCccccc---------ccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHH
Confidence            6677 9999999999986544321         01125689999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCc
Q 013008          122 AVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF  200 (451)
Q Consensus       122 a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~y  200 (451)
                      |+++++++..+  ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.|++         +++||.++++|
T Consensus        72 ai~~q~~~~~~--~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~g---------r~~ii~~~~~y  140 (423)
T TIGR00713        72 AVKEALERGTS--YGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTG---------RDKIIKFEGCY  140 (423)
T ss_pred             HHHHHHHhCCc--CCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEEcCCC
Confidence            99999988543  23456678999999999886 67999999999999999999999974         78999999999


Q ss_pred             cCChhhhhhccCC--CCcCCCCcCC-----CCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHHH
Q 013008          201 HGRTMGALALTSK--EHYRSPFEPV-----MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQF  271 (451)
Q Consensus       201 hg~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~  271 (451)
                      ||++.....+++.  .....++.+.     .+....+|++|+++|+++++  .+++++||+||+++++|.++++++|+++
T Consensus       141 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~  220 (423)
T TIGR00713       141 HGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAG  220 (423)
T ss_pred             CCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHH
Confidence            9998776664432  2122122221     23456788899999999996  2579999999999999988888999999


Q ss_pred             HHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---CCccCCCCCc
Q 013008          272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGSTFAGS  348 (451)
Q Consensus       272 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t~~~~  348 (451)
                      |+++|++||++||+||||+|| |+|.+++++++++.||++||||++++|+|+|++++++++++.+..   ..+.+||++|
T Consensus       221 l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~  299 (423)
T TIGR00713       221 LRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGN  299 (423)
T ss_pred             HHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCC
Confidence            999999999999999999999 888877788889999999999999999999999999999998863   2467899999


Q ss_pred             HHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC---------------hHHH
Q 013008          349 PLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS---------------ATPV  399 (451)
Q Consensus       349 ~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~---------------~~~~  399 (451)
                      |++|++++++|+.++++++.++              ++++++.+..+++.|+++++++..+               ...+
T Consensus       300 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  379 (423)
T TIGR00713       300 PLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKF  379 (423)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHH
Confidence            9999999999999877655544              2344566666789999999887311               2257


Q ss_pred             HHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          400 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       400 ~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++.|+++||++.+.+. +.+|++|+  +|+++|++++++|+++++++
T Consensus       380 ~~~l~~~Gv~v~~~~~-~~~~l~~~--~t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       380 FHEMLDKGVFLPPSQF-EACFLSAA--HTEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             HHHHHHCCeEEecCCc-cceeeECC--CCHHHHHHHHHHHHHHHhhC
Confidence            8889999999877654 56788765  79999999999999998753

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=7.9e-59  Score=463.93  Aligned_cols=356  Identities=46%  Similarity=0.768  Sum_probs=312.0

Q ss_pred             CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCC
Q 013008           77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD  156 (451)
Q Consensus        77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e  156 (451)
                      +.+.|+.+++++|.++||.||++||||.+|+++.+|||+||+|++|+.+++++..+.+..+.++...+|++++.+..+.+
T Consensus         8 ~~~~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~   87 (377)
T PRK02936          8 YGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAGD   87 (377)
T ss_pred             ccCCCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCCCC
Confidence            34678999999999999999999999999999999999999999999999988644444455677889999999887778


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE  236 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  236 (451)
                      +++|++||++|++.|+++++.++         ++++||+++++|||++..++.+++...+...+.+..+++..++++|++
T Consensus        88 ~~~~~~sG~~a~~~A~~~a~~~~---------g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (377)
T PRK02936         88 LVFFCNSGAEANEAALKLARKHT---------GKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIK  158 (377)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHhc---------CCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHH
Confidence            99999999999999999998875         377899999999999999988877655555566777788889999999


Q ss_pred             HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccc
Q 013008          237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP  316 (451)
Q Consensus       237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~  316 (451)
                      ++++.+.+ ++++|++||+++++|..+++++|+++|+++|++||+++|+||||+|||++|.+++++++++.||+++|||+
T Consensus       159 ~l~~~~~~-~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~  237 (377)
T PRK02936        159 ALKEVMNE-EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKG  237 (377)
T ss_pred             HHHHhccC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEccc
Confidence            99999964 68999999999999998899999999999999999999999999999999987777788999999999999


Q ss_pred             ccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------H---HhCCCCcceec
Q 013008          317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------K---LARNPHVKDVR  382 (451)
Q Consensus       317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~---~~~~~~~~~v~  382 (451)
                      +++|+|+|++++++++++.+....+.+|+++||++|+|+.++|+.+..++++++           +   ..+++.+..++
T Consensus       238 l~~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~  317 (377)
T PRK02936        238 LGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIR  317 (377)
T ss_pred             ccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEe
Confidence            999999999999999999997666778999999999999999998755444444           2   22356666678


Q ss_pred             ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       383 g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.|+++++++......+.+.|.++||++.|.+. +.+||+|++.++++++++++++|++++
T Consensus       318 ~~g~~~~i~~~~~~~~~~~~l~~~gv~v~~~g~-~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        318 GKGLMIGIECTEEVAPVIEQLREEGLLVLSAGP-NVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             ecceEEEEEecchHHHHHHHHHHCCeEEecCCC-CEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            899999999865577889999999999998765 789999999999999999999998764

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=6e-59  Score=492.01  Aligned_cols=378  Identities=27%  Similarity=0.373  Sum_probs=307.6

Q ss_pred             HHHHHHHhcccccCCC-------CceEEEeeccc----EEEecCCC----EEEeeccCcccccCC-CCCHHHHHHHHHHH
Q 013008           64 EVMEAEKKLLVGTYNR-------APVVLASGKGC----KLYDAEGR----EYLDLSSGIAVNALG-HGDADWIKAVVDQA  127 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~~-------~p~~~~~~~G~----~l~d~~G~----~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~  127 (451)
                      ++.++..++.+++|..       .|.++++++|.    |++|.+|+    +|||+++++++.++| |+||+|.+|+.+|+
T Consensus       316 ~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa  395 (817)
T PLN02974        316 SMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAA  395 (817)
T ss_pred             HHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHH
Confidence            3344455666665543       36788999998    99999998    999999999999999 58999999999999


Q ss_pred             hhcccccC-CCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHH-HHhhhcCCCCC---------CCCceE
Q 013008          128 NVLTHVSN-MYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFAR-KFQRHSNPDSK---------EPATEF  193 (451)
Q Consensus       128 ~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~-~~~~~~~~~~~---------~~~~~i  193 (451)
                      +++.|..+ .+.+++..+|+++|.+..+   .++|+|++||+||++.|||+|+ .|+...+.+..         .+|.+|
T Consensus       396 ~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kI  475 (817)
T PLN02974        396 GRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKV  475 (817)
T ss_pred             hhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEE
Confidence            99887654 3567889999999999664   4799999999999999999996 47654432100         137789


Q ss_pred             EEEcCCccCChhhhhhccCCCCcCCCC-cCC-C--------CCe------e--EeeCC--C-------------------
Q 013008          194 VSFTNSFHGRTMGALALTSKEHYRSPF-EPV-M--------PGV------N--FVEYG--N-------------------  234 (451)
Q Consensus       194 i~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~-~--------~~~------~--~~~~~--d-------------------  234 (451)
                      |.+.++|||.+.+++++++...++..+ .+. .        |.+      .  .+|++  +                   
T Consensus       476 Ia~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~  555 (817)
T PLN02974        476 LALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKT  555 (817)
T ss_pred             EEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccccccccccccccccccc
Confidence            999999999999999998754333222 110 0        110      0  01111  0                   


Q ss_pred             ----------HHHHHHhcC-------CCCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc
Q 013008          235 ----------IEATRKLIQ-------PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG  296 (451)
Q Consensus       235 ----------~~~le~~l~-------~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G  296 (451)
                                .+.+++.|+       .+++++||+||+ +|.+|+++++++|+++|+++|++||++||+|||+|||||+|
T Consensus       556 r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG  635 (817)
T PLN02974        556 RDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLG  635 (817)
T ss_pred             ccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCccc
Confidence                      245666664       357999999995 89999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC------CCccCCCCCcHHHHHHHHHHHHHhcChH---
Q 013008          297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGSPLVCNAAIAVLDKISNPA---  366 (451)
Q Consensus       297 ~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~---  366 (451)
                      ++|+++++|+.|||+|+||+|+|| +|+|++++++++++.+..      ..|++||++||++|+|++++|+++++++   
T Consensus       636 ~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~  715 (817)
T PLN02974        636 VESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNP  715 (817)
T ss_pred             chhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHH
Confidence            999999999999999999999999 699999999999998852      2488999999999999999999998763   


Q ss_pred             -HHHH-----------H---HhCCCCcceecccceeEEEEecCC----------hHHHHHHHH-HCCceeeecCCCCEEE
Q 013008          367 -FLAS-----------K---LARNPHVKDVRGLGLIIGIEFDVS----------ATPVVDACR-DSGLLVLTAGKGNVVR  420 (451)
Q Consensus       367 -~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~~~----------~~~~~~~l~-~~Gv~~~~~~~~~~ir  420 (451)
                       +.++           +   ++++|.+.++|+.|+|+++++..+          +..+.+.|+ ++|+++.+.+  ++++
T Consensus       716 ~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G--nvi~  793 (817)
T PLN02974        716 NLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG--NVVY  793 (817)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC--CEEE
Confidence             2222           2   245788999999999999999321          246788888 9999999864  7899


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Q 013008          421 LVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       421 i~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.||+.+++|++++++++|.+.|
T Consensus       794 l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        794 LMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999876

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2.5e-58  Score=463.51  Aligned_cols=364  Identities=47%  Similarity=0.761  Sum_probs=316.9

Q ss_pred             cccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhh
Q 013008           72 LLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVA  151 (451)
Q Consensus        72 ~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  151 (451)
                      +....|...|+++.+++|.++||.||++||||.+++++++|||+||+|.+++.+++++..+.+..+.+....+|+++|++
T Consensus        17 ~~~~~~~~~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~   96 (398)
T PRK03244         17 VMMNNYGTPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVE   96 (398)
T ss_pred             HhhhhccCCCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHH
Confidence            34444556789999999999999999999999999999999999999999999999986554445666778899999999


Q ss_pred             ccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCee
Q 013008          152 CSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN  228 (451)
Q Consensus       152 ~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (451)
                      .++   .++++|++||+||++.|+++++.+          ++++||.++++|||++..++.+++.......+.+..+++.
T Consensus        97 ~~~~~~~~~v~~~~sgsea~~~al~~~~~~----------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (398)
T PRK03244         97 LLGAPEGGRVFFCNSGAEANEAAFKLARLT----------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVE  166 (398)
T ss_pred             hCCCCCCCEEEEeCchHHHHHHHHHHHHHH----------CCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCce
Confidence            876   369999999999999999998863          3678999999999999998888765544445556666788


Q ss_pred             EeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCc
Q 013008          229 FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP  308 (451)
Q Consensus       229 ~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p  308 (451)
                      .+|++|++++++++. +++++|++||+++++|.++++++|+++|+++|++||++||+||+|+||||+|.+++++++++.|
T Consensus       167 ~~~~~d~~~l~~~~~-~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~p  245 (398)
T PRK03244        167 HVPYGDVDALAAAVD-DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTP  245 (398)
T ss_pred             EeCCCCHHHHHHhhc-CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCC
Confidence            889999999999985 4799999999999999999999999999999999999999999999999999887888889999


Q ss_pred             ceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhC--CC
Q 013008          309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLAR--NP  376 (451)
Q Consensus       309 di~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~--~~  376 (451)
                      |++||||++++|+|+|++++++++++.+....+.+||++||++|+++.++|+.++++++.++          .++.  +|
T Consensus       246 Di~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  325 (398)
T PRK03244        246 DVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALGHP  325 (398)
T ss_pred             CEEEEchhhhCCcccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999987667888999999999999999998876665555          2222  45


Q ss_pred             CcceecccceeEEEEec-CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          377 HVKDVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       377 ~~~~v~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+..+++.|++++++++ ..+..+.+.|+++||++.+.+. +.+|++|++.++++||++++++|++++.+++
T Consensus       326 ~~~~v~g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~  396 (398)
T PRK03244        326 LVDHVRGRGLLLGIVLTAPVAKAVEAAAREAGFLVNAVAP-DVIRLAPPLIITDAQVDAFVAALPAILDAAA  396 (398)
T ss_pred             ceeeEeeccEEEEEEEeccHHHHHHHHHHHCCeEEeecCC-CEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence            55678899999999984 3466799999999999988654 8899999999999999999999999998765

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=100.00  E-value=5.3e-58  Score=461.15  Aligned_cols=378  Identities=36%  Similarity=0.604  Sum_probs=320.9

Q ss_pred             HHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHH
Q 013008           64 EVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQI  143 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~  143 (451)
                      .+.++..++....+.+.|+++.+++|+++||.||++||||.+++++.++||+||+|.+|+.++++++.+.+..+.++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~   82 (401)
T TIGR01885         3 EAIERENKYGAHNYHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFG   82 (401)
T ss_pred             hHHHHHHHhhhcccCCCCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHH
Confidence            34455555555566677899999999999999999999999999999999999999999999998876654444677799


Q ss_pred             HHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC
Q 013008          144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV  223 (451)
Q Consensus       144 ~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  223 (451)
                      +|+++|++.++.++++|++||++||+.|+++++.++....+. ..++++|+.++.+|||++.+++++++.......+.+.
T Consensus        83 ~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~-~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  161 (401)
T TIGR01885        83 EFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGI-PENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPY  161 (401)
T ss_pred             HHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCC-CCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCC
Confidence            999999999998999999999999999999999886322100 0147789999999999999999888765444445555


Q ss_pred             CCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc
Q 013008          224 MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH  301 (451)
Q Consensus       224 ~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~  301 (451)
                      .+++..++++|+++|+++++  .+++++|++||+++++|.+.++++||++|+++|++||+++|+||||+|||++|.+++.
T Consensus       162 ~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~  241 (401)
T TIGR01885       162 VPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCV  241 (401)
T ss_pred             CCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHH
Confidence            56778899999999999986  3578999999999999999999999999999999999999999999999999988777


Q ss_pred             cccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008          302 EHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       302 ~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------  370 (451)
                      +++++.||++++||++++| +|+|++++++++++.+....+..|++++|++++++.++|+.++++++.++          
T Consensus       242 ~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~  321 (401)
T TIGR01885       242 DHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRD  321 (401)
T ss_pred             hhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            7789999999999999976 89999999999999887656778999999999999999999876555444          


Q ss_pred             HHhCC--CCcceecccceeEEEEecC-----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          371 KLARN--PHVKDVRGLGLIIGIEFDV-----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       371 ~~~~~--~~~~~v~g~G~~~~~~~~~-----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .++.+  +.+..+++.|+++.+.++.     .+.++++.|.++||++.|.+. +.+||.|++.+++++|++++++|++++
T Consensus       322 ~L~~l~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~-~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       322 QLKKLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHG-NIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             HHHhccCCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecCC-CEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence            22333  4556678999999988842     356799999999999988765 789999999999999999999999876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=2.7e-58  Score=465.04  Aligned_cols=381  Identities=26%  Similarity=0.418  Sum_probs=318.1

Q ss_pred             ccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHH
Q 013008           41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI  120 (451)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~  120 (451)
                      +|.+| ++.|++.+|||...+...+         .++.+.|+++++++|.++||.||++||||.+++++.+|||+||+|.
T Consensus         3 ~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~   72 (426)
T PRK00062          3 KSEEL-FERAKKLIPGGVNSPVRAF---------KSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVV   72 (426)
T ss_pred             hhHHH-HHHHHHhCCCCcCCccccc---------CCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHH
Confidence            57788 9999999999976554432         3344568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 013008          121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS  199 (451)
Q Consensus       121 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~  199 (451)
                      +++.+++++...  ..+.++...+|+++|++..+ .++|+|++||+||++.|+++++.+++         +++||.++++
T Consensus        73 ~a~~~~~~~~~~--~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g---------~~~ii~~~~~  141 (426)
T PRK00062         73 EAVIEAAEKGLS--FGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTG---------RDKIIKFEGC  141 (426)
T ss_pred             HHHHHHHHhCCc--CCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhC---------CCeEEEEcCc
Confidence            999999988432  33456778899999999874 78999999999999999999998864         7899999999


Q ss_pred             ccCChhhhhhccCCCC--cCCCCcC-----CCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHH
Q 013008          200 FHGRTMGALALTSKEH--YRSPFEP-----VMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       200 yhg~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      |||++.++...++...  ....+.+     ..++...++++|++++++.++  .+++++||+||+++++|.++++++||+
T Consensus       142 yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~  221 (426)
T PRK00062        142 YHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLE  221 (426)
T ss_pred             cCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHH
Confidence            9999977766543211  1111111     113456678899999999885  358999999999999999999999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---CCccCCCCC
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGSTFAG  347 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t~~~  347 (451)
                      +|+++|++||+++|+||||+|| |+|.+++.+++++.||++++||++++|+|+|++++++++++.+..   ..+.+|+++
T Consensus       222 ~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~  300 (426)
T PRK00062        222 GLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSG  300 (426)
T ss_pred             HHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcC
Confidence            9999999999999999999999 888888888899999999999999999999999999999998853   246678999


Q ss_pred             cHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC---------------hHH
Q 013008          348 SPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS---------------ATP  398 (451)
Q Consensus       348 ~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~---------------~~~  398 (451)
                      ||++|++++++|+.++++++.++              +.++++.+..+++.|+|+.+++..+               +..
T Consensus       301 ~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~  380 (426)
T PRK00062        301 NPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFAR  380 (426)
T ss_pred             CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHH
Confidence            99999999999999987666555              2234676777899999999998421               257


Q ss_pred             HHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       399 ~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +...|+++||++.+.+. +.+++  ++++|++||++++++|+++++++
T Consensus       381 i~~~l~~~Gv~v~~~~~-~~~~~--~~~~t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        381 FFHAMLDEGVYLAPSQF-EAGFV--SAAHTDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             HHHHHHHCCeEeecCCc-Cceee--eccCCHHHHHHHHHHHHHHHHhh
Confidence            88899999999988764 45665  68999999999999999999764

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=100.00  E-value=2.9e-59  Score=457.68  Aligned_cols=308  Identities=45%  Similarity=0.758  Sum_probs=270.3

Q ss_pred             EEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhcc--CCCeEE
Q 013008           83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACS--FADRVF  159 (451)
Q Consensus        83 ~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~e~v~  159 (451)
                      ++++++|+|+||.||++||||++++++.+|||+||+|.+++.+++++..+.. ..+.++...+|+++|.+..  +.++++
T Consensus         1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~   80 (339)
T PF00202_consen    1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVF   80 (339)
T ss_dssp             EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEE
T ss_pred             CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceee
Confidence            5789999999999999999999999999999999999999999999876654 4456777999999999999  488999


Q ss_pred             ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHH--
Q 013008          160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA--  237 (451)
Q Consensus       160 ~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--  237 (451)
                      |++||+||++.|+|+++.+...+..+   +|.+||.++++|||++.+++++++.+.++..+.+..+++..+|++|+..  
T Consensus        81 f~~sGseAve~Alkla~~~~~~~~~~---~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  157 (339)
T PF00202_consen   81 FANSGSEAVEAALKLARQYHNKRAYT---GRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADE  157 (339)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHTHHH---TTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHH
T ss_pred             eccCchHHHHHHHHHhhccccccccc---CCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhh
Confidence            99999999999999999443322211   4889999999999999999999888777777888888889999998766  


Q ss_pred             --------HHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC
Q 013008          238 --------TRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI  306 (451)
Q Consensus       238 --------le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~  306 (451)
                              +++.+.   .+++++||+||+++++|.++++++||++|+++|++||++||+|||+|||||+|++|+++++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv  237 (339)
T PF00202_consen  158 EEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGV  237 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTS
T ss_pred             hHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccc
Confidence                    333332   568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HH
Q 013008          307 FPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KL  372 (451)
Q Consensus       307 ~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~  372 (451)
                      .||++|+||++++|+|+|++++++++++.+.+..+++||++||++|++++++|+.++++++.++              +.
T Consensus       238 ~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~  317 (339)
T PF00202_consen  238 DPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLRELA  317 (339)
T ss_dssp             SSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccccchhhhhhcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998878999999999999999999999988877666              45


Q ss_pred             hCCCCcceecccceeEEEEec
Q 013008          373 ARNPHVKDVRGLGLIIGIEFD  393 (451)
Q Consensus       373 ~~~~~~~~v~g~G~~~~~~~~  393 (451)
                      ++++.+..++|.|+|+++++.
T Consensus       318 ~~~~~i~~vrg~Gl~~~ie~~  338 (339)
T PF00202_consen  318 ARYPLIGEVRGIGLMIGIELV  338 (339)
T ss_dssp             HHTTTEEEEEEETTEEEEEES
T ss_pred             HhCCCeEEEeeeCeEEEEEEE
Confidence            667889999999999999873

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=100.00  E-value=3.1e-58  Score=464.25  Aligned_cols=369  Identities=27%  Similarity=0.428  Sum_probs=289.2

Q ss_pred             HHHHhcccccCCCCceEEEeecccEEEec-CCCEEEeeccCcccccCCCCCHHHH--HHHHHHHhhccc---ccCCCCCH
Q 013008           67 EAEKKLLVGTYNRAPVVLASGKGCKLYDA-EGREYLDLSSGIAVNALGHGDADWI--KAVVDQANVLTH---VSNMYYSI  140 (451)
Q Consensus        67 ~~~~~~~~~~~~~~p~~~~~~~G~~l~d~-~G~~~iD~~~~~~~~~lG~~~p~v~--~a~~~~~~~~~~---~~~~~~~~  140 (451)
                      +...++....-.|.++.+++++|+||||. ||++||||.+++++.+|||+||+|.  +|+.+|+++..+   ......++
T Consensus         6 ~~~~~~~~~~~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~   85 (431)
T TIGR03251         6 EVLSRHMLTDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTV   85 (431)
T ss_pred             HHHHHHhhccCCceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCH
Confidence            33444444321234444699999999996 9999999999999999999999999  999999987632   12234566


Q ss_pred             HHHHHHHHHhhcc-C--CCeEEecCCHHHHHHHHHHHHHHHhhhc----CCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          141 PQIELAKRLVACS-F--ADRVFFSNTGTEANEAAIKFARKFQRHS----NPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       141 ~~~~l~~~l~~~~-~--~e~v~~~~sG~eA~~~al~~a~~~~~~~----~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      ...+++++|++.. +  .++++|++||+||++.|+|+||+||+.+    +.+ .++|.+||.++++|||++.+++++++.
T Consensus        86 ~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~-~~~~~~ii~~~~~yHG~t~~als~~~~  164 (431)
T TIGR03251        86 AMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIP-AALGTQVLHLRQAFHGRSGYTLSLTNT  164 (431)
T ss_pred             HHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCC-CCCCceEEEECCccCCcchhhhhccCC
Confidence            7889999998875 2  6899999999999999999999997531    211 012578999999999999999998775


Q ss_pred             CCcCCCCcCCC-------CCe------------eEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHHHH
Q 013008          214 EHYRSPFEPVM-------PGV------------NFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFL  272 (451)
Q Consensus       214 ~~~~~~~~~~~-------~~~------------~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l  272 (451)
                      ..+...+.|..       +..            .....++++++++.++  ++++++||+||+++++|+++++++||++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l  244 (431)
T TIGR03251       165 DPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAM  244 (431)
T ss_pred             ccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHH
Confidence            43332222211       100            0001134566677775  56899999999999999999999999999


Q ss_pred             HHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHH---Hhh-cc-CCCccCCCCC
Q 013008          273 RDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV---ASA-IN-YGDHGSTFAG  347 (451)
Q Consensus       273 ~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i---~~~-~~-~~~~~~t~~~  347 (451)
                      +++|++||++||+|||+|||||+|.+|+++++++.||++++||++    ++++++..+++   ++. +. ...+.+||++
T Consensus       245 ~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~g  320 (431)
T TIGR03251       245 RALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGG  320 (431)
T ss_pred             HHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccC----ccceEEecchHHHhhhhcccCccccCCCCCC
Confidence            999999999999999999999999999999999999999999997    44444454443   321 21 2347889999


Q ss_pred             cHHHHHHHHHHHHHhcChHHHHH--------------HHhCCC-CcceecccceeEEEEecC--ChHHHHHHHHHCCcee
Q 013008          348 SPLVCNAAIAVLDKISNPAFLAS--------------KLARNP-HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLV  410 (451)
Q Consensus       348 ~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~-~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~  410 (451)
                      ||++|+|++++|+.++++++.++              +.++++ .+.++++.|+|+++++..  ....+.+.|+++||++
T Consensus       321 npl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~  400 (431)
T TIGR03251       321 NLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTADRDEVIRQLYREGVLL  400 (431)
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHHHHHHHHHHHHhCCeEE
Confidence            99999999999999877666544              334567 778899999999999842  2456889999999999


Q ss_pred             eecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          411 LTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       411 ~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      .+.+. +.+||+||+.+|++||++++++|++
T Consensus       401 ~~~g~-~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       401 LGCGE-RSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             ecCCC-CeEEEECCccCCHHHHHHHHHHHHh
Confidence            88765 7899999999999999999999976

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=6.8e-57  Score=453.11  Aligned_cols=373  Identities=52%  Similarity=0.862  Sum_probs=322.1

Q ss_pred             HHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHH
Q 013008           68 AEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAK  147 (451)
Q Consensus        68 ~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~  147 (451)
                      ...++..+.|.+.|+++++++|+++||.||++||||.+++++.+|||+||+|.+++.+++++..+.+..+.++.+.+|++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~   88 (396)
T PRK02627          9 LEKKYLMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAE   88 (396)
T ss_pred             HHHHhhcccccCCCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHH
Confidence            33445556677789999999999999999999999999999999999999999999999987655444566777999999


Q ss_pred             HHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCe
Q 013008          148 RLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV  227 (451)
Q Consensus       148 ~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~  227 (451)
                      +|++..+.+++++++||+||++.|+++++.+++..+.    ++++|++++++|||++..++..++...+...+.+...++
T Consensus        89 ~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~----~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~  164 (396)
T PRK02627         89 KLVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGI----EKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGF  164 (396)
T ss_pred             HHHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCC----CCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCc
Confidence            9999988999999999999999999999988753221    237899999999999999888876655444555656677


Q ss_pred             eEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCC
Q 013008          228 NFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF  307 (451)
Q Consensus       228 ~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~  307 (451)
                      ..++++|++++++++. +++++|++||+++++|+.+++++++++|+++|++||++||+||+|+|||++|.+++++.+++.
T Consensus       165 ~~~~~~d~~~l~~~i~-~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~  243 (396)
T PRK02627        165 IYVPFNDIEALKAAIT-DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIE  243 (396)
T ss_pred             eEeCCCCHHHHHHhcC-CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCC
Confidence            7889999999999995 479999999999999988899999999999999999999999999999999987777788999


Q ss_pred             cceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHh
Q 013008          308 PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLA  373 (451)
Q Consensus       308 pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~  373 (451)
                      ||+++|||++++|+|+|++++++++++.+....+..|+++||++|+++.++|+.++++++.++              +..
T Consensus       244 pdi~t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  323 (396)
T PRK02627        244 PDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLE  323 (396)
T ss_pred             CCEEEEcchhhCCcccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987666788999999999999999998766555443              223


Q ss_pred             CCCCcceecccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          374 RNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       374 ~~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +++.+..+++.|+++++++.....++++.|+++||++.|++. +.+|++|++.++++++++++++|+++++++
T Consensus       324 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~-~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        324 KYPGIKEVRGLGLMIGIELDRPAAEIVKKALEKGLLINVTGD-NVLRLLPPLIISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             hCCCeeeeccCcEEEEEEecCcHHHHHHHHHHCCeEEeecCC-CEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence            345556678889999998865678899999999999998765 789999999999999999999999998764

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=100.00  E-value=5.5e-57  Score=456.02  Aligned_cols=358  Identities=37%  Similarity=0.623  Sum_probs=305.4

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHhhccC---C
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSF---A  155 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~---~  155 (451)
                      .|+++++++|+++||+||++||||.+++++.++||+||+|.+++.++++++.+.... ..++...+|+++|++..+   .
T Consensus        23 ~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~  102 (425)
T PRK08088         23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFA  102 (425)
T ss_pred             CCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence            489999999999999999999999999999999999999999999999987654322 346678899999999875   3


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-CcCCCCcCCCCCeeEeeC--
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVEY--  232 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--  232 (451)
                      ++++|++||+||++.|+++++.+++         +.+||.++++|||++.++.++++.. .+..++.+..+++..+++  
T Consensus       103 ~~~~f~~sGsea~e~Alklar~~~~---------r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  173 (425)
T PRK08088        103 KKTLLVTTGSEAVENAVKIARAATK---------RSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC  173 (425)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHhC---------CCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCc
Confidence            6999999999999999999999874         6789999999999999998887542 233344444444433322  


Q ss_pred             --CC------HHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc
Q 013008          233 --GN------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA  300 (451)
Q Consensus       233 --~d------~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~  300 (451)
                        ++      ++.|+++++    ++++++||+||+++++|.++++++++++|+++|++||+++|+||+|+|+|++|.+++
T Consensus       174 ~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~  253 (425)
T PRK08088        174 PLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFA  253 (425)
T ss_pred             cccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhH
Confidence              21      567888885    468999999999999999999999999999999999999999999999999998878


Q ss_pred             ccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008          301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       301 ~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------  370 (451)
                      ++.+++.||+.+|||++++|+|+||+++++++++.+....+..|+++||+.|+++.++|+.++.++++++          
T Consensus       254 ~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  333 (425)
T PRK08088        254 MEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKD  333 (425)
T ss_pred             HhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999998777889999999999999999998866555544          


Q ss_pred             ----HHhCCCCcceecccceeEEEEec--C--------ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHH
Q 013008          371 ----KLARNPHVKDVRGLGLIIGIEFD--V--------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       371 ----~~~~~~~~~~v~g~G~~~~~~~~--~--------~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~  435 (451)
                          +.+++|.+..+++.|+++|+.+.  .        ....+.+.|+++||++.+.+. ++.+|++|++.+++++|+++
T Consensus       334 ~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~  413 (425)
T PRK08088        334 GLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG  413 (425)
T ss_pred             HHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHH
Confidence                34556777788999999999982  1        156788999999998877543 58899999999999999999


Q ss_pred             HHHHHHHHHHH
Q 013008          436 VEILCKTLPVL  446 (451)
Q Consensus       436 l~~l~~~l~~~  446 (451)
                      +++|.+++.++
T Consensus       414 i~~l~~~l~~~  424 (425)
T PRK08088        414 LEIIAQCFDEA  424 (425)
T ss_pred             HHHHHHHHHhh
Confidence            99999999764

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=100.00  E-value=1.3e-56  Score=451.50  Aligned_cols=375  Identities=37%  Similarity=0.624  Sum_probs=316.7

Q ss_pred             ccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhc
Q 013008           73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVAC  152 (451)
Q Consensus        73 ~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  152 (451)
                      ..+.+.+.|+++++++|+|+||.||++||||++++++.++||+||+|.+|+.++++++.+.+..+.++...++++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   85 (400)
T PTZ00125          6 GAHNYHPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDL   85 (400)
T ss_pred             cccccCCCCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhC
Confidence            34456678899999999999999999999999999999999999999999999998876655444566788888889888


Q ss_pred             cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       153 ~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                      .+.++++|++||++|++.|+++++.++..+.+.+ .++++||.++.+|||++...+..++.......+.+..+++..+++
T Consensus        86 ~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~-~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (400)
T PTZ00125         86 FGYDKVLPMNSGAEAGETALKFARKWGYEVKGIP-ENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY  164 (400)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCC-CCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC
Confidence            8889999999999999999999986642111000 136789999999999999988877654433344555567778899


Q ss_pred             CCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee
Q 013008          233 GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT  312 (451)
Q Consensus       233 ~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t  312 (451)
                      +|+++|+++++.+++++|++||+++++|.+.++++|+++|+++|++||+++|+||||+|+|++|.++..+.+++.||+++
T Consensus       165 ~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~  244 (400)
T PTZ00125        165 NDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVL  244 (400)
T ss_pred             CCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEE
Confidence            99999999997557999999999999999999999999999999999999999999999999998777777899999999


Q ss_pred             ecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCC
Q 013008          313 LAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPH  377 (451)
Q Consensus       313 ~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~  377 (451)
                      +||++++| +|+|++++++++++.+....+..|++++|+.++++.++|+.++++++.++              +...++.
T Consensus       245 ~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  324 (400)
T PTZ00125        245 LGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPW  324 (400)
T ss_pred             EcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999988 59999999999999987666778999999999999999998865554433              1123355


Q ss_pred             cceecccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008          378 VKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN  449 (451)
Q Consensus       378 ~~~v~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~  449 (451)
                      +..+++.|+++++.++.    ...++++.|+++||++.|.+. +.+||+|++.++++++++++++|+++++++..|
T Consensus       325 ~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~~~  399 (400)
T PTZ00125        325 VKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHD-NIIRFAPPLVITKEQLDQALEIIKKVLKSFDSN  399 (400)
T ss_pred             eEEEecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeecCC-CEEEEECCccCCHHHHHHHHHHHHHHHHHHhcC
Confidence            55678899999998842    356789999999999998765 789999999999999999999999999987654

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=100.00  E-value=1.6e-56  Score=450.91  Aligned_cols=380  Identities=34%  Similarity=0.578  Sum_probs=319.6

Q ss_pred             hHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 013008           62 NKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP  141 (451)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~  141 (451)
                      .+++.+....+....+.+.|+.+++++|+|+||.||++||||.+++++.++||+||+|.+|+.++++++.+.+..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~   84 (401)
T PRK00854          5 SEDLIATEQRLGAHNYKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQ   84 (401)
T ss_pred             CHHHHHHHhhhhhcccCCCCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHH
Confidence            34455444444555566788999999999999999999999999999999999999999999999998776555556777


Q ss_pred             HHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCc
Q 013008          142 QIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFE  221 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~  221 (451)
                      ..+|+++|++..+.+++++++||++|++.|+++++.++....+. ..++++||+++.+|||++..++.+++.+..+..+.
T Consensus        85 ~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~-~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~  163 (401)
T PRK00854         85 LAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGV-PEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFG  163 (401)
T ss_pred             HHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCC-CCCCceEEEECCCcCCccHHHHhccCCccccccCC
Confidence            89999999999988899999999999999999999875221110 01367899999999999988887776655544556


Q ss_pred             CCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc
Q 013008          222 PVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH  301 (451)
Q Consensus       222 ~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~  301 (451)
                      +..+++.+++++|++++++.+.+ ++++|++||+++++|.+.++++||++|+++|++||++||+||+|+|||++|.+++.
T Consensus       164 ~~~~~~~~~~~~d~~~le~~i~~-~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~  242 (401)
T PRK00854        164 PFTPGFRVVPFGDAEALEAAITP-NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAE  242 (401)
T ss_pred             CCCCCeEEeCCCCHHHHHHHhCC-CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHH
Confidence            66778889999999999999964 68999999999999999989999999999999999999999999999999987777


Q ss_pred             cccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008          302 EHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       302 ~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------  370 (451)
                      +++++.||++++||++++| +|+|++++++++++.+....+..||+++|+.++++.++|+.+++++..++          
T Consensus       243 ~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~  322 (401)
T PRK00854        243 EHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLE  322 (401)
T ss_pred             hhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            7789999999999999988 79999999999999887666788999999999999999998765444433          


Q ss_pred             HHhCC--CCcceecccceeEEEEec---CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          371 KLARN--PHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       371 ~~~~~--~~~~~v~g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      .++.+  +.+..+++.|.++.+.+.   ....++++.|+++||++.+.+. +.+|++|++.+++++|++++++|++++.
T Consensus       323 ~L~~~~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~~~-~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        323 GLRSIRSNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDTHD-HTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             HHHhhccCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecCCC-CEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence            12222  224456888999998773   2357899999999999987654 7899999999999999999999998864

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=5.4e-55  Score=435.63  Aligned_cols=354  Identities=44%  Similarity=0.742  Sum_probs=301.3

Q ss_pred             CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCC
Q 013008           77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD  156 (451)
Q Consensus        77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e  156 (451)
                      |.+.|+++++++|+||||.||++||||.+++++.+||| ||+|++|+.++++++.............++++++... ...
T Consensus         8 ~~~~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~-~~~   85 (375)
T PRK04260          8 YKRAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD-KDY   85 (375)
T ss_pred             cCCCCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC-cCC
Confidence            44568899999999999999999999999999999999 9999999999998754433334455567777766542 133


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE  236 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  236 (451)
                      .++|++||+||++.|+++++.++         ++++||+++++|||++..+++.++.......+.+..+.+...+++|++
T Consensus        86 ~~~~~~SGseA~~~Al~~ar~~~---------~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~  156 (375)
T PRK04260         86 LAFFCNSGAEANEAAIKIARKAT---------GKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLN  156 (375)
T ss_pred             EEEEcCccHHHHHHHHHHHHHhc---------CCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHH
Confidence            67999999999999999999875         477899999999999999888776554444444444445556788999


Q ss_pred             HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccc
Q 013008          237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP  316 (451)
Q Consensus       237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~  316 (451)
                      ++++++. +++++|++||+++++|.++++.+||++|+++|++||+++|+||+|+|||++|.++.++.+++.||++||||+
T Consensus       157 ~l~~~l~-~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~  235 (375)
T PRK04260        157 SVKALVN-KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKG  235 (375)
T ss_pred             HHHHhcC-CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEeccc
Confidence            9999885 468999999999999999999999999999999999999999999999999987777788999999999999


Q ss_pred             ccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceec
Q 013008          317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVR  382 (451)
Q Consensus       317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~  382 (451)
                      +++|+|+|++++++++++.+....+.+||++||++++++.++|+.++.+++.++              ++.+++.+..++
T Consensus       236 l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  315 (375)
T PRK04260        236 LANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVR  315 (375)
T ss_pred             ccCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe
Confidence            999999999999999999987666788999999999999999998876666555              233455566788


Q ss_pred             ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       383 g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.|+++++++......+.++|+++||++.|.+. +.+|+.|++.++++++++++++|++++
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~lR~~~~~~~t~~~i~~~l~~l~~~~  375 (375)
T PRK04260        316 GLGYMIGIETTADLSQLVEAARDKGLIVLTAGT-NVIRLLPPLTLTKEEIEQGIAILSEVF  375 (375)
T ss_pred             ccceEEEEEecCcHHHHHHHHHhCCCEEecCCC-CEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence            899999999866678899999999999988765 789999999999999999999998753

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=100.00  E-value=2.1e-54  Score=436.49  Aligned_cols=369  Identities=21%  Similarity=0.310  Sum_probs=290.8

Q ss_pred             cccccchhhhccCCCCCCcchHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHH
Q 013008           42 SVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI  120 (451)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~  120 (451)
                      |.+| +++|.+++|+|+++..+.+         ..|. +.|+++++++|+|+||.||++||||.+++++.+|||+||+|.
T Consensus         1 s~~l-~~~a~~~~p~g~~~~~~~~---------~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~   70 (431)
T PRK06209          1 SQLL-QSRLHALIPGGAHTYAKGD---------DQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVV   70 (431)
T ss_pred             CHHH-HHHHHhhCCCCCCCCcccc---------ccCCCCCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHH
Confidence            4567 8999999999998777632         1122 468999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE-cC
Q 013008          121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF-TN  198 (451)
Q Consensus       121 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~-~~  198 (451)
                      +|+.+|+++...  ....+....+|+++|++..+ .++|+|++||+||++.|+|+||.||+         |.+|+.+ ..
T Consensus        71 ~Ai~~q~~~~~~--~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tg---------r~~i~~~~~~  139 (431)
T PRK06209         71 EAVREALQDGCN--FTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTG---------RDLVARCADH  139 (431)
T ss_pred             HHHHHHHHhCcC--CCCCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhC---------CCeEEEeccC
Confidence            999999998643  22344446689999999886 68999999999999999999999984         7789888 67


Q ss_pred             CccCChhhhhhccCCCCcCCCC-cCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHHHHHHH
Q 013008          199 SFHGRTMGALALTSKEHYRSPF-EPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA  275 (451)
Q Consensus       199 ~yhg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l  275 (451)
                      +|||+.......+.   ..... .........+++||+++|+++++  .+++++||+||++++    .++++||++|+++
T Consensus       140 ~~h~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~l  212 (431)
T PRK06209        140 PFFSTDDWFIGTTP---MSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRL  212 (431)
T ss_pred             ccccccccccccCC---CCCCCChhHhccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHH
Confidence            77764322111000   00000 01112345678899999999986  357999999999876    6789999999999


Q ss_pred             HHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhh--cc----C--CCccCCCCC
Q 013008          276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASA--IN----Y--GDHGSTFAG  347 (451)
Q Consensus       276 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~--~~----~--~~~~~t~~~  347 (451)
                      |++||++||+|||++||++.+ ++..+++++.||++|+||++|+|+|+|++++++++++.  +.    .  ..+++|+++
T Consensus       213 c~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~  291 (431)
T PRK06209        213 CHENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGA  291 (431)
T ss_pred             HHHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCC
Confidence            999999999999999997653 33455689999999999999999999999999999987  31    1  136789999


Q ss_pred             cHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec------CC----hHHHHHHH
Q 013008          348 SPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD------VS----ATPVVDAC  403 (451)
Q Consensus       348 ~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~------~~----~~~~~~~l  403 (451)
                      ||++|+|++++|++++++++.++              +..+++....+++.|.+..+.+-      ..    ...+.+.|
T Consensus       292 np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l  371 (431)
T PRK06209        292 ETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQET  371 (431)
T ss_pred             CHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHH
Confidence            99999999999999987766555              22346666668888887777651      11    12567888


Q ss_pred             HHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          404 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       404 ~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +++|+++.|      +  +++..||++||++++++|++++++++
T Consensus       372 ~~~Gi~~p~------l--~is~~ht~~dId~~l~~l~~~l~~~~  407 (431)
T PRK06209        372 IRRGVLMPS------L--VVSYAHGDADIERTIDAVHGALGVYR  407 (431)
T ss_pred             HHCCccccc------c--cccccCCHHHHHHHHHHHHHHHHHHH
Confidence            999998732      3  44678999999999999999998874

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=100.00  E-value=1.6e-53  Score=431.02  Aligned_cols=355  Identities=46%  Similarity=0.789  Sum_probs=304.5

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHhhccC--C
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~--~  155 (451)
                      +.|+++++++|.++||.||++||||.+|+++.++||+||+|.+++.+++++..+.... +.++...+++++|++.++  .
T Consensus        17 ~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~   96 (413)
T cd00610          17 PYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGL   96 (413)
T ss_pred             CCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCC
Confidence            5789999999999999999999999999999999999999999999999775443222 246679999999999998  8


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC--
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--  233 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  233 (451)
                      ++++|++||++|++.|+++++.++         ++++||+++++|||++...+..++...+...+.+...++..+|++  
T Consensus        97 ~~v~~~~sgsea~~~al~~~~~~~---------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (413)
T cd00610          97 DKVFFVNSGTEAVEAALKLARAYT---------GRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYR  167 (413)
T ss_pred             CEEEEcCcHHHHHHHHHHHHHHHc---------CCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCcc
Confidence            999999999999999999998776         488999999999999999888776544444444555667788888  


Q ss_pred             ---------CHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccc
Q 013008          234 ---------NIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE  302 (451)
Q Consensus       234 ---------d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~  302 (451)
                               |+++|+++++.  +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|||++|.++.++
T Consensus       168 ~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~  247 (413)
T cd00610         168 YRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFE  247 (413)
T ss_pred             ccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHh
Confidence                     89999999874  5799999999999999988999999999999999999999999999999999877788


Q ss_pred             ccCCCcceeeecccccCCcccccccccHHHHhhc--cCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008          303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI--NYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       303 ~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------  370 (451)
                      ++++.||++++||++++|+|+|++++++++++.+  ....+.+|+++||++++++.++|+.++++++.++          
T Consensus       248 ~~~~~~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~  327 (413)
T cd00610         248 HFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRE  327 (413)
T ss_pred             hcCCCCCeEEEcccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999986  4455678999999999999999998866555444          


Q ss_pred             ----HHhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHH
Q 013008          371 ----KLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       371 ----~~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l  436 (451)
                          +...++.+..+++.|.++++.+..          ....+++.|+++||++.|++. +.+|++|++.+|++++++++
T Consensus       328 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~-~~lR~~~~~~~t~~~i~~~~  406 (413)
T cd00610         328 RLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGG-NVIRLLPPLIITEEEIDEGL  406 (413)
T ss_pred             HHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCC-CEEEEECCCcCCHHHHHHHH
Confidence                111124455567889999998842          346788999999999998763 78999999999999999999


Q ss_pred             HHHHHHH
Q 013008          437 EILCKTL  443 (451)
Q Consensus       437 ~~l~~~l  443 (451)
                      ++|++++
T Consensus       407 ~~l~~~l  413 (413)
T cd00610         407 DALDEAL  413 (413)
T ss_pred             HHHHHhC
Confidence            9998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=100.00  E-value=4e-53  Score=380.46  Aligned_cols=357  Identities=27%  Similarity=0.504  Sum_probs=294.3

Q ss_pred             CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-C
Q 013008           77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-A  155 (451)
Q Consensus        77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~  155 (451)
                      |..-|+.++|++|.|++|.+|++|||+.++..  ..|||||+|++|..+|+...... ..+.++...+.++.|...++ .
T Consensus        26 y~sDP~kivRaq~QYmfDE~g~~yLDCInNVa--Hvghchp~VV~A~~kQmat~~tN-~RFlhd~lv~cA~~l~stlPeL  102 (452)
T KOG1403|consen   26 YRSDPLKIVRAQGQYMFDEEGTRYLDCINNVA--HVGHCHPEVVRAGAKQMATISTN-NRFLHDELVQCARTLTSTLPEL  102 (452)
T ss_pred             ecCCchhhehhccceeeccCcccHHHHhhhhh--hcccCCHHHHHHHHHHHhHhccc-chhhHHHHHHHHHHHhhcCCCc
Confidence            45679999999999999999999999999855  78999999999999999875432 34555567788888888776 8


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEe-eCC-
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV-EYG-  233 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-  233 (451)
                      +-++|+|||+|||.+|+|+||.||+         ..++|+.+.+|||+....+.++....-.. -....|+.+.+ |.+ 
T Consensus       103 svc~F~NSGSEANDLALRLAR~ftk---------hqDvItldHAYHGHl~s~mE~SPYKF~~g-~~v~kpd~VHVAPcPD  172 (452)
T KOG1403|consen  103 SVCFFVNSGSEANDLALRLARNFTK---------HQDVITLDHAYHGHLQSVMEVSPYKFNQG-GGVAKPDYVHVAPCPD  172 (452)
T ss_pred             eEEEEecCCchhhHHHHHHHHhhcc---------cCceEEEechhccceeeeeeccceeccCC-CCcCCCceeEecCCcc
Confidence            8999999999999999999999985         67899999999999877776663221110 00111222111 111 


Q ss_pred             --------------C-----HHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008          234 --------------N-----IEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ  289 (451)
Q Consensus       234 --------------d-----~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~  289 (451)
                                    |     .+.++++++     ...++++|.|..++.||-+.||.+|++.+.+..+.+|.+.|.|||+
T Consensus       173 vyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQ  252 (452)
T KOG1403|consen  173 VYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQ  252 (452)
T ss_pred             ccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhh
Confidence                          1     345556554     3468999999999999999999999999999999999999999999


Q ss_pred             cCCCcccc-cccccccCCCcceeeecccccCCcccccccccHHHHhhccC--CCccCCCCCcHHHHHHHHHHHHHhcChH
Q 013008          290 CGLGRTGY-LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY--GDHGSTFAGSPLVCNAAIAVLDKISNPA  366 (451)
Q Consensus       290 tg~gr~G~-~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~--~~~~~t~~~~~~~~aaa~aal~~~~~~~  366 (451)
                      .||||.|+ .|+++.+++.|||+|++|.+|+|.|+++|+..++|.+.|..  .....||+|||++||+++++++++++++
T Consensus       253 vGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~  332 (452)
T KOG1403|consen  253 VGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDEN  332 (452)
T ss_pred             hcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhh
Confidence            99999997 78999999999999999999999999999999999999964  2456899999999999999999999888


Q ss_pred             HHHH--------------HHhCCCCcceecccceeEEEEe--c----C----ChHHHHHHHHH-CCceeeecCC-CCEEE
Q 013008          367 FLAS--------------KLARNPHVKDVRGLGLIIGIEF--D----V----SATPVVDACRD-SGLLVLTAGK-GNVVR  420 (451)
Q Consensus       367 ~~~~--------------~~~~~~~~~~v~g~G~~~~~~~--~----~----~~~~~~~~l~~-~Gv~~~~~~~-~~~ir  420 (451)
                      +.++              +..+++++.++||.|+|+++++  +    .    .+..+..+|.+ +||++...|+ .+.+.
T Consensus       333 Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilK  412 (452)
T KOG1403|consen  333 LQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILK  412 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceee
Confidence            8776              4467889999999999999998  2    1    13345566665 4799887665 47899


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          421 LVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       421 i~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |-||.+.++|+.++.+..|+++|.-+
T Consensus       413 iKPPmCFneena~e~v~~ld~iLT~m  438 (452)
T KOG1403|consen  413 IKPPMCFNEENADEFVLGLDEILTVM  438 (452)
T ss_pred             cCCCcccChhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999988644

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=100.00  E-value=1.2e-50  Score=405.31  Aligned_cols=362  Identities=52%  Similarity=0.868  Sum_probs=303.3

Q ss_pred             cCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC
Q 013008           76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA  155 (451)
Q Consensus        76 ~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  155 (451)
                      ++.+.|+++++++|.++||.||++||||.+++++++|||+||.|.+++.+++++..+.+..+.++...+|+++|+++++.
T Consensus         5 ~~~~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~   84 (379)
T TIGR00707         5 TYGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSGA   84 (379)
T ss_pred             ccCCCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCC
Confidence            34578999999999999999999999999999999999999999999999998865444445677799999999999998


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCH
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI  235 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  235 (451)
                      +++++++||++|++.++++++.+++.+++    ++++|++++++|||+...+...++...+...+.+..+++.+++++|+
T Consensus        85 ~~~~~~~sg~~a~~~a~~~~~~~~~~~~~----~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (379)
T TIGR00707        85 DRVFFCNSGAEANEAALKLARKYTGDKGK----EKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDI  160 (379)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHhhccCC----CCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCH
Confidence            89999999999999999999877642211    36899999999999998888776654433334455566778888999


Q ss_pred             HHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecc
Q 013008          236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK  315 (451)
Q Consensus       236 ~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK  315 (451)
                      +++++.+.+ ++++|+++|+++++|..+++.+++++|.++|++||+++|+||+|++||+.|.++.....++.||+++|||
T Consensus       161 ~~l~~~~~~-~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK  239 (379)
T TIGR00707       161 ESLKKAIDD-ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAK  239 (379)
T ss_pred             HHHHHHhhh-CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcc
Confidence            999999864 5789999999999988778999999999999999999999999999998887555566788999999999


Q ss_pred             cccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------HH---hCC--C-Ccceec
Q 013008          316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------KL---ARN--P-HVKDVR  382 (451)
Q Consensus       316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~~---~~~--~-~~~~v~  382 (451)
                      ++++|+|+|++++++++++.+....+..+++.|+++++++.++|+.++..++.++       +.   ++.  . ....++
T Consensus       240 ~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (379)
T TIGR00707       240 GLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYPNKEVR  319 (379)
T ss_pred             cccCCcccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhCCCCccc
Confidence            9998999999999999999987666677889999999999999997765444333       11   111  0 123345


Q ss_pred             ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       383 g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.|.++++.+.....++.+.|.++||++.|.+. +.+|++|++.+++|++++++++|++++
T Consensus       320 ~~g~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~lRi~~~~~~t~~~i~~~~~~l~~~~  379 (379)
T TIGR00707       320 GKGLMLGIELEAPCKDIVKKALEKGLLVNCAGP-KVLRFLPPLIITKEEIDEAVSALEEAI  379 (379)
T ss_pred             cCceEEEEEecCcHHHHHHHHHHCCcEEeeCCC-CEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            678899998855577899999999999998765 789999999999999999999998763

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-42  Score=317.62  Aligned_cols=383  Identities=27%  Similarity=0.379  Sum_probs=286.4

Q ss_pred             ccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHH-HHhh-
Q 013008           52 RGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVD-QANV-  129 (451)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~-~~~~-  129 (451)
                      +++||.   ..+++.+...++....--.+++-.+++.|+|++|+|||.+||..+.....++|++||.+++++.+ +..+ 
T Consensus        33 esIPGP---ks~~l~kel~~v~~t~~v~F~~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~p~~~~~  109 (484)
T KOG1405|consen   33 ESIPGP---KSQELKKELDKVQDTEAVHFFVDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATM  109 (484)
T ss_pred             ccCCCc---hhHHHHHHHhHhhcccceEEehhhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcChHHHHH
Confidence            456665   66776665544333222234566789999999999999999999999999999999999988764 2222 


Q ss_pred             cccccCCCCCHHHHHHHHHHhh----ccC--CCeEEecCCHHHHHHHHHHHHHHHhh--hcCCC---------------C
Q 013008          130 LTHVSNMYYSIPQIELAKRLVA----CSF--ADRVFFSNTGTEANEAAIKFARKFQR--HSNPD---------------S  186 (451)
Q Consensus       130 ~~~~~~~~~~~~~~~l~~~l~~----~~~--~e~v~~~~sG~eA~~~al~~a~~~~~--~~~~~---------------~  186 (451)
                      +...+ ....-+..++++.|.+    ..+  ...|...-+|+.||+.|++++.-|.+  .++..               +
T Consensus       110 lvnRP-ALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aP  188 (484)
T KOG1405|consen  110 LVNRP-ALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAP  188 (484)
T ss_pred             Hhccc-cccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCC
Confidence            21111 1122224455555544    333  67899999999999999999886653  22211               1


Q ss_pred             CCCCceEEEEcCCccCChhhhhhccCCCCcCC-C---C-cCCCCCee--------EeeCC------CHHHHHHhcC----
Q 013008          187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRS-P---F-EPVMPGVN--------FVEYG------NIEATRKLIQ----  243 (451)
Q Consensus       187 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~-~---~-~~~~~~~~--------~~~~~------d~~~le~~l~----  243 (451)
                      +.|.-.|+.|.++|||++.++++.+....++. +   | +|. ..+.        .+.+|      .++++|++|.    
T Consensus       189 g~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPi-A~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~  267 (484)
T KOG1405|consen  189 GAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPI-APFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRK  267 (484)
T ss_pred             CCCceeeeeeccccccccccccccccCccccccCCCCCCCCC-CCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhh
Confidence            24566799999999999999988763322221 1   1 111 1111        11122      3788888886    


Q ss_pred             -CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC--CcceeeecccccCC
Q 013008          244 -PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLAKPLAGG  320 (451)
Q Consensus       244 -~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~--~pdi~t~sK~lg~G  320 (451)
                       +..++++|+||++++||....+++|++.|+++|+|||+.+|+||||||-|.||+.|+++++++  .||++||||-+-.|
T Consensus       268 k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~g  347 (484)
T KOG1405|consen  268 KKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTG  347 (484)
T ss_pred             cCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcC
Confidence             246999999999999999999999999999999999999999999999999999999999988  58999999988532


Q ss_pred             cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCC-Ccceecccc
Q 013008          321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNP-HVKDVRGLG  385 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~-~~~~v~g~G  385 (451)
                         |+. -.++++.. .+..+..||.|.|.-.....++++.+.+++++++              +.+++| .+..+||+|
T Consensus       348 ---Gff-h~~~frpn-~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrG  422 (484)
T KOG1405|consen  348 ---GFF-HDEEFRPN-EPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRG  422 (484)
T ss_pred             ---ccc-cCcccCCC-chHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccc
Confidence               332 22232211 1224568999999988888899999999888877              557788 577899999


Q ss_pred             eeEEEEec--CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          386 LIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       386 ~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .|+.+++.  ...+.++..+.-+|+.+..+|. ..+||+|+++.++.+.+-+++++++.++.
T Consensus       423 TF~a~d~ps~~~Rdk~i~~~~~nGv~~GGCg~-~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  423 TFIAWDCPSGSIRDKLILIARLNGVNLGGCGD-KSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             eEEEEeCCChHHHHHHHHHHHHcCceeccccc-ceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence            99999994  2345688888899999999887 78999999999999999999999998864

>PRK07505 hypothetical protein; Provisional

Probab=100.00  E-value=2.7e-40  Score=332.67  Aligned_cols=358  Identities=16%  Similarity=0.125  Sum_probs=260.4

Q ss_pred             chHHHHHHHHhcccccC--CCCceEEEeecccEEEecCCCEEEeeccCcccccCC-CCCHHHHHHHHHHHhhcc---ccc
Q 013008           61 NNKEVMEAEKKLLVGTY--NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLT---HVS  134 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~--~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~---~~~  134 (451)
                      +.+.+..+.++...+.|  ++.++.+++++|+++||.||++||||.++   ..+| |+||+|++|+.+++++++   +.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~   83 (402)
T PRK07505          7 NNKKRINRAEKFWDAAYDEGLNGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSS   83 (402)
T ss_pred             HHHHHHHhhHHHHHHHHhcccccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCc
Confidence            34444444433333333  35578899999999999999999999984   4688 999999999999998754   111


Q ss_pred             C--CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          135 N--MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       135 ~--~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .  ...++...+++++|++.++. ++++++||++|++.++++++....   +   .++.++|+++++|||.......   
T Consensus        84 ~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~---~---~~~~~vi~~~~~~H~s~~~~~~---  153 (402)
T PRK07505         84 SRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHL---T---GGVPPHMVFDKNAHASLNILKG---  153 (402)
T ss_pred             cchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhccc---C---CCCCCEEEEchhhhHhHHhhhh---
Confidence            1  13455689999999999887 778888999999999998764210   0   0245699999999985421110   


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc--c
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ--C  290 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~--t  290 (451)
                         ...    ...++..+|++|+++|+++++++..++|++||++++|+ +.+    +++|+++|++||++||+||+|  +
T Consensus       154 ---~~~----~~~~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~-~~~----~~~i~~l~~~~~~~li~DEa~~~~  221 (402)
T PRK07505        154 ---ICA----DETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGG-IAP----VKELLRLQEKYGLFLYIDDAHGLS  221 (402)
T ss_pred             ---hhh----cCCeEEEeCCCCHHHHHHHHhcCCCEEEEEecccccCC-cCC----HHHHHHHHHHcCCEEEEECccccc
Confidence               010    12467788999999999999766688999999998855 455    899999999999999999998  5


Q ss_pred             CCCcccccccccccCC-Cccee----eecccccCCccccccc-ccHHHHhhccCCCccCCCCCc--HHHHHHHHHHHHHh
Q 013008          291 GLGRTGYLWAHEHYGI-FPDIM----TLAKPLAGGLPIGAAL-VTEKVASAINYGDHGSTFAGS--PLVCNAAIAVLDKI  362 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~-~pdi~----t~sK~lg~G~~iG~v~-~~~~i~~~~~~~~~~~t~~~~--~~~~aaa~aal~~~  362 (451)
                      ++|++|.+++.++++. .||.+    |+||+++++  .|+++ .++++++.+....+..||+++  +++++++.++++.+
T Consensus       222 ~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~  299 (402)
T PRK07505        222 IYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIH  299 (402)
T ss_pred             CcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHH
Confidence            6888888767677786 67744    799999853  36665 478888888765666777654  58999999999865


Q ss_pred             cChHHH---HHHH---hCCCC--cceecccceeE-EEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCC
Q 013008          363 SNPAFL---ASKL---ARNPH--VKDVRGLGLII-GIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPL  425 (451)
Q Consensus       363 ~~~~~~---~~~~---~~~~~--~~~v~g~G~~~-~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~  425 (451)
                      .++.+.   +.+.   +.++.  ...+++.++++ ++.+..  ...++.+.|+++||++.+...      .+.+||+|++
T Consensus       300 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~  379 (402)
T PRK07505        300 LSEELDQLQQKLQNNIALFDSLIPTEQSGSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRA  379 (402)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCc
Confidence            443322   1111   11111  12235556554 333332  356799999999999987521      1589999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 013008          426 IISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .+|+||+++++++|++++++
T Consensus       380 ~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        380 SHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             cCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999998864

>PLN02822 serine palmitoyltransferase

Probab=100.00  E-value=2.2e-37  Score=316.06  Aligned_cols=329  Identities=20%  Similarity=0.257  Sum_probs=250.7

Q ss_pred             EEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccC-C
Q 013008           83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSF-A  155 (451)
Q Consensus        83 ~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~-~  155 (451)
                      ++.+++|.+++ .+|++||||.++++   +|. .||+|++|+.+++++++.++.     +++++.+.+|+++|+++++ .
T Consensus        95 ~~~~~~G~~i~-~~G~~~id~~s~~~---lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~  170 (481)
T PLN02822         95 VLESAAGPHTI-INGKDVVNFASANY---LGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTP  170 (481)
T ss_pred             ceecCCCCeEE-ECCceEEEeECCCc---CCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCC
Confidence            67889999999 79999999999877   444 699999999999999765322     2355669999999999998 5


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCH
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI  235 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  235 (451)
                      +.++|++ |..++.+++++.   ++         +.++|++++.||+....++.+++            ..+.++++||.
T Consensus       171 ~~i~~s~-G~~a~~sai~a~---~~---------~gd~Ii~d~~~H~s~~~~~~ls~------------~~~~~~~~nd~  225 (481)
T PLN02822        171 DSILYSY-GLSTIFSVIPAF---CK---------KGDIIVADEGVHWGIQNGLYLSR------------STIVYFKHNDM  225 (481)
T ss_pred             CEEEECC-HHHHHHHHHHHh---CC---------CCCEEEEeCCccHHHHHHHHHcC------------CeEEEECCCCH
Confidence            5666665 555788888844   32         44566688999988766655543            34567888999


Q ss_pred             HHHHHhcC---C-----CCe-EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc--CCCccccccccccc
Q 013008          236 EATRKLIQ---P-----GKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC--GLGRTGYLWAHEHY  304 (451)
Q Consensus       236 ~~le~~l~---~-----~~~-aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--g~gr~G~~~~~~~~  304 (451)
                      ++++..++   .     .++ ++|++|++++++|.+.+    |++|+++|++||++||+||+|+  .+|++|.+ ..+++
T Consensus       226 ~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~  300 (481)
T PLN02822        226 ESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHF  300 (481)
T ss_pred             HHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHc
Confidence            88887775   1     224 89999999999999887    9999999999999999999997  35666665 56888


Q ss_pred             CC---Ccceee--ecccccCCcccccccccHHHHhhccCCCccCCCCCc--HHHHHHHHHHHHHhcC-hHHHHH------
Q 013008          305 GI---FPDIMT--LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGS--PLVCNAAIAVLDKISN-PAFLAS------  370 (451)
Q Consensus       305 ~~---~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~--~~~~aaa~aal~~~~~-~~~~~~------  370 (451)
                      ++   .+|+++  |||++|.  ..|++++++++++.++...++++|+++  |..++|++++|+.++. ++..++      
T Consensus       301 ~v~~~~~dii~~s~sKalg~--~GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~  378 (481)
T PLN02822        301 GVPIEKIDIITAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIA  378 (481)
T ss_pred             CCCCCCCeEEEecchhhhhh--CCeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            87   688876  8899973  228889999999998766777888876  8889999999988754 444433      


Q ss_pred             ----HHhCCCCccee-cccceeEEEEecCC----------hHHHHHHHH-HCCceeeecCC--------CCEEEEeCCCC
Q 013008          371 ----KLARNPHVKDV-RGLGLIIGIEFDVS----------ATPVVDACR-DSGLLVLTAGK--------GNVVRLVPPLI  426 (451)
Q Consensus       371 ----~~~~~~~~~~v-~g~G~~~~~~~~~~----------~~~~~~~l~-~~Gv~~~~~~~--------~~~iri~~~~~  426 (451)
                          .+++.+.+... .+.+.++.+.++..          ..+++++|+ ++||++.+...        +..+|++++..
T Consensus       379 ~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~  458 (481)
T PLN02822        379 LLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAG  458 (481)
T ss_pred             HHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCC
Confidence                12222222212 24566777777321          256899998 78999986521        23699999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHh
Q 013008          427 ISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       427 ~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +|++||++++++|++++.++.
T Consensus       459 ~t~edI~~~~~~l~~~~~~~~  479 (481)
T PLN02822        459 HTESDILKASESLKRVAASVL  479 (481)
T ss_pred             CCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988764

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=100.00  E-value=1.7e-34  Score=290.94  Aligned_cols=318  Identities=17%  Similarity=0.160  Sum_probs=243.0

Q ss_pred             CCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~  169 (451)
                      +|+++|+|+++.|   ||. +||+|++|+.++++++++++.     .+.++.+.+|+++|+++++.+++++++||++||+
T Consensus        43 ~~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~  119 (406)
T PRK13393         43 GPREVTVWCSNDY---LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNW  119 (406)
T ss_pred             CCccEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHH
Confidence            4689999999888   998 799999999999998765321     1234468999999999999899999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC---CCC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGK  246 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~  246 (451)
                      .|++++...          .++++|+++..||+++..++..++.            .+..++++|++++++.++   +.+
T Consensus       120 ~ai~~l~~~----------~~g~~I~~~~~~H~s~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~~~~~~~  177 (406)
T PRK13393        120 AALSTLGSR----------LPGCVILSDELNHASMIEGIRHSRA------------EKRIFRHNDPADLERKLSDLDPHR  177 (406)
T ss_pred             HHHHHhhcC----------CCCCEEEEccchhHHHHHHHHHcCC------------eEEEeCCCCHHHHHHHHHhccCCC
Confidence            999954321          1345889999999998776654321            234567789999998886   236


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CC-CcccccccccccCCC--ccee--eecccccCC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLWAHEHYGIF--PDIM--TLAKPLAGG  320 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~~~~~~~~~--pdi~--t~sK~lg~G  320 (451)
                      +++|++|++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |+.|.++ .++.++.  +|++  +|||+++. 
T Consensus       178 ~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~-  251 (406)
T PRK13393        178 PKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGV-  251 (406)
T ss_pred             CEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcc-
Confidence            789999999999999888    9999999999999999999996 65 7777654 3566654  5776  99999974 


Q ss_pred             cccccccccHHHHhhccCCCcc--CCCCCcHHHHHHHHHHHHHhcChHHH-HH-------H---HhCCCCcceeccccee
Q 013008          321 LPIGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISNPAFL-AS-------K---LARNPHVKDVRGLGLI  387 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~--~t~~~~~~~~aaa~aal~~~~~~~~~-~~-------~---~~~~~~~~~v~g~G~~  387 (451)
                       +.||+++++++++.+......  .+.+.+|.+++++.++|+.+++.... ++       +   ++.. ....+++.|.+
T Consensus       252 -~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i  329 (406)
T PRK13393        252 -MGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA-GIPHLPNPSHI  329 (406)
T ss_pred             -cCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCe
Confidence             227888899998887654332  46677899999999999987543221 11       1   1222 22335677888


Q ss_pred             EEEEecC--ChHHHHHHHHH-CCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFDV--SATPVVDACRD-SGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       388 ~~~~~~~--~~~~~~~~l~~-~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +.+.+..  .+.++.+.|++ +||++.+...      .+.+|++|++.+|++|+++++++|+++++++
T Consensus       330 ~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        330 VPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL  397 (406)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence            8776632  35678888987 5999875321      1679999999999999999999999988764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=100.00  E-value=1e-33  Score=285.14  Aligned_cols=318  Identities=20%  Similarity=0.206  Sum_probs=239.0

Q ss_pred             CCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~  169 (451)
                      +|+++++|+|+.|   ||. +||+|++|+.+++++++.++.     .++++.+.+|+++|+++++.+.+++++||++||+
T Consensus        43 ~~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~  119 (402)
T TIGR01821        43 GAKDVTVWCSNDY---LGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVAND  119 (402)
T ss_pred             CCeeEEEeEccCc---CCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHH
Confidence            4699999999988   887 699999999999998765322     1245668999999999999888999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC---CCC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGK  246 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~  246 (451)
                      .+++++...          .++.+++.+..||+.....+...+.+            +..++++|+++++++++   +++
T Consensus       120 ~ai~~l~~~----------~~~~~v~~~~~~h~s~~~~~~~~g~~------------~~~~~~~d~~~l~~~l~~~~~~~  177 (402)
T TIGR01821       120 ATLATLAKI----------IPGCVIFSDELNHASMIEGIRHSGAE------------KFIFRHNDVAHLEKLLQSVDPNR  177 (402)
T ss_pred             HHHHHhhCC----------CCCCEEEEcchHhHHHHHHHHHcCCe------------EEEECCCCHHHHHHHHHhccCCC
Confidence            999987632          13457788888998877665543321            22356678999998886   235


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-C-CCcccccccccccCC--Cccee--eecccccCC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI--FPDIM--TLAKPLAGG  320 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~~~--~pdi~--t~sK~lg~G  320 (451)
                      +++|++|++++++|.+.+    +++|+++|++||++||+||+|+ | +|..|.+. .+++++  .+|++  ||||++++ 
T Consensus       178 ~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~-  251 (402)
T TIGR01821       178 PKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGGI-AERDGLMHRIDIIEGTLAKAFGV-  251 (402)
T ss_pred             CeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCcc-chhccCCCCCeEEEEechhhhcc-
Confidence            789999999999998887    9999999999999999999997 4 34444432 345555  46776  99999974 


Q ss_pred             cccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcChHHHH-H----------HHhCCCCcceeccccee
Q 013008          321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNPAFLA-S----------KLARNPHVKDVRGLGLI  387 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~~~~~~-~----------~~~~~~~~~~v~g~G~~  387 (451)
                       ..||+++++++++.+....  ...+.+.+|+++++++++|+.+++.+... +          .++.+. +..+.+.|.+
T Consensus       252 -~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~i  329 (402)
T TIGR01821       252 -VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG-IPVIPNPSHI  329 (402)
T ss_pred             -CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC-CCcCCCCCCE
Confidence             2278889999998875322  23456789999999999999876543222 1          122221 2223456777


Q ss_pred             EEEEecC--ChHHHHHHHHH-CCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFDV--SATPVVDACRD-SGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       388 ~~~~~~~--~~~~~~~~l~~-~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +.+.+..  .+.++.+.|++ +||++.+...      .+.+|++|++.+|++|+++++++|+++++++
T Consensus       330 ~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  397 (402)
T TIGR01821       330 VPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL  397 (402)
T ss_pred             EEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            7776632  35678888875 5999876421      2579999999999999999999999998765

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=100.00  E-value=4.3e-34  Score=278.45  Aligned_cols=321  Identities=20%  Similarity=0.205  Sum_probs=248.3

Q ss_pred             eecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCCeEE
Q 013008           86 SGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVF  159 (451)
Q Consensus        86 ~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e~v~  159 (451)
                      +..+..++ .+|++++||+||.|   ||. +||++++++.+++++++.+.+     .++.+.+.+|+++|+++++.|.++
T Consensus        28 ~~~~~~~~-~~~~~~~nf~SNdY---LGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al  103 (388)
T COG0156          28 RRQGLAIR-ADGRKVLNFCSNDY---LGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAAL  103 (388)
T ss_pred             ccCCccee-cCCceeEeeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEE
Confidence            34455544 46999999999998   998 699999999999999654422     235667999999999999999999


Q ss_pred             ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHH
Q 013008          160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR  239 (451)
Q Consensus       160 ~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le  239 (451)
                      +++||..||.+++.++.            .++.+|+.|-..|.+...+..++..            .+..+.|||+++||
T Consensus       104 ~f~SGy~AN~~~i~~l~------------~~~dli~~D~lnHASiidG~rls~a------------~~~~f~HnD~~~Le  159 (388)
T COG0156         104 LFSSGFVANLGLLSALL------------KKGDLIFSDELNHASIIDGIRLSRA------------EVRRFKHNDLDHLE  159 (388)
T ss_pred             EEcccchhHHHHHHHhc------------CCCcEEEEechhhhhHHHHHHhCCC------------cEEEecCCCHHHHH
Confidence            99999999999999777            4678999999999998887776643            34557789999999


Q ss_pred             HhcCC---C--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--cccccccCCCcc---
Q 013008          240 KLIQP---G--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHYGIFPD---  309 (451)
Q Consensus       240 ~~l~~---~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~~~~pd---  309 (451)
                      +.+++   .  +...|++|.+++|.|.+.|    |++|.+||++|+++|++||+|+ +|..|+  .+..+++|+.++   
T Consensus       160 ~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~g~~~~~vd  234 (388)
T COG0156         160 ALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHFGLEPEEVD  234 (388)
T ss_pred             HHHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHhCCCCccce
Confidence            99973   1  3689999999999999999    9999999999999999999994 544443  234667787643   


Q ss_pred             e--eeecccccC-CcccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-HHhC---------
Q 013008          310 I--MTLAKPLAG-GLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-KLAR---------  374 (451)
Q Consensus       310 i--~t~sK~lg~-G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-~~~~---------  374 (451)
                      |  .||||+||+ |   |++.+++.+.+.+...  ...++.+.+|..++++.++|+.+++...... +.+.         
T Consensus       235 i~~gTlsKAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~  311 (388)
T COG0156         235 IIVGTLGKALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLK  311 (388)
T ss_pred             EEEEEchhhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            3  389999984 5   8999999999998654  3345556789999999999999876544333 1111         


Q ss_pred             CCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          375 NPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       375 ~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      ...+........+..+.+.  ..+..+...|+++||++.+...      -..+|+++++.||++||+.+++.|.++
T Consensus       312 ~~~~~~~~s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         312 ALGLVLLPSESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             hcCCccCCCCCCeeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            1011112333445555552  3467788999999999875432      157999999999999999999998864

>PRK09064 5-aminolevulinate synthase; Validated

Probab=100.00  E-value=5.5e-33  Score=280.32  Aligned_cols=317  Identities=18%  Similarity=0.192  Sum_probs=237.5

Q ss_pred             CCEEEeeccCcccccCCCC-CHHHHHHHHHHHhhcccccC----C-CCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHVSN----M-YYSIPQIELAKRLVACSFADRVFFSNTGTEANEA  170 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~----~-~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~  170 (451)
                      |++++||+|+.+   ||+. ||+|++|+.++++++++++.    . ++++.+.+|+++|+++++.+..++++||++||+.
T Consensus        45 ~~~~~~~~s~dy---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~  121 (407)
T PRK09064         45 EREVTVWCSNDY---LGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDA  121 (407)
T ss_pred             CceEEEEECCCC---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHH
Confidence            599999999887   9985 99999999999988654321    1 2456699999999999987888888999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC---CCCe
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGKT  247 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~  247 (451)
                      +++++..+          .++.+++.+..+|+.....+...+.            ....++++|+++|+++++   ++++
T Consensus       122 ai~~l~~~----------~~~~~i~~~~~~h~s~~~~~~~~~~------------~~~~~~~~d~~~le~~l~~~~~~~~  179 (407)
T PRK09064        122 TLSTLAKL----------IPDCVIFSDELNHASMIEGIRRSRC------------EKHIFRHNDVAHLEELLAAADPDRP  179 (407)
T ss_pred             HHHHHhCC----------CCCCEEEEeCcchHHHHHHHHHcCC------------cEEEECCCCHHHHHHHHHhccCCCC
Confidence            99987632          1345777776677766555443321            123456789999999886   2467


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-C-CCcccccccccccCC--Cccee--eecccccCCc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI--FPDIM--TLAKPLAGGL  321 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~~~--~pdi~--t~sK~lg~G~  321 (451)
                      ++|++|++++++|.+.+    +++|+++|++||++||+||+|+ | +|+.|.++ .++.++  .+|++  ||||++|.  
T Consensus       180 ~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~--  252 (407)
T PRK09064        180 KLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGV--  252 (407)
T ss_pred             eEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhc--
Confidence            89999999999998887    9999999999999999999997 6 57777654 455565  56877  99999973  


Q ss_pred             ccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcChHHH-HH----------HHhCCCCcceecccceeE
Q 013008          322 PIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNPAFL-AS----------KLARNPHVKDVRGLGLII  388 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~~~~~-~~----------~~~~~~~~~~v~g~G~~~  388 (451)
                      ..|++++++++++.+....  +..+.+.+|.++++++++++.++..+.. ++          .+++.. +..+.+.+.++
T Consensus       253 ~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~iv  331 (407)
T PRK09064        253 MGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAG-IPVMPNESHIV  331 (407)
T ss_pred             cCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCCEE
Confidence            2388889999888775322  2335677899999999999988654322 22          122222 22233456677


Q ss_pred             EEEecC--ChHHHHHHHHH-CCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          389 GIEFDV--SATPVVDACRD-SGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       389 ~~~~~~--~~~~~~~~l~~-~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .+.+..  .+.++.+.|++ +||++.+...      .+.+|++|++.+|++|+++++++|+++++++
T Consensus       332 ~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        332 PVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL  398 (407)
T ss_pred             EEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            776632  35678888875 5999976421      1579999999999999999999999998765

>PLN02955 8-amino-7-oxononanoate synthase

Probab=100.00  E-value=3.3e-33  Score=278.21  Aligned_cols=333  Identities=16%  Similarity=0.093  Sum_probs=243.3

Q ss_pred             CCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~  169 (451)
                      .++++++|+|+.|   ||. .||++++++.+++++++.++.     .+++..+.+|+++|+++++.|.+++++||+.||.
T Consensus       100 ~~r~~l~FsSndY---LGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~  176 (476)
T PLN02955        100 RFKKLLLFSGNDY---LGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANM  176 (476)
T ss_pred             CCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHH
Confidence            4579999999888   887 699999999999999765422     2345668999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc--CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CC
Q 013008          170 AAIKFARKFQRHS--NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PG  245 (451)
Q Consensus       170 ~al~~a~~~~~~~--~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~  245 (451)
                      +++.++.......  .+....+++.+|+.|...|.+...++.++....        ...+..++|||+++|+++++  .+
T Consensus       177 ~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~--------~a~~~~f~HND~~~Le~~L~~~~~  248 (476)
T PLN02955        177 AAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQG--------NVEVFVYRHCDMYHLNSLLSSCKM  248 (476)
T ss_pred             HHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccC--------CceEEEeCCCCHHHHHHHHHhCCC
Confidence            9999763111000  000001355688999999999888776652210        12355678999999999996  34


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--cccccccCCCcce----eeecccccC
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHYGIFPDI----MTLAKPLAG  319 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~~~~pdi----~t~sK~lg~  319 (451)
                      +.++|++|+++++.|.+.|    |++|.++|++||++||+||+|+ +|+.|+  .+..+++++.+|+    .||||++|.
T Consensus       249 ~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~  323 (476)
T PLN02955        249 KRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC  323 (476)
T ss_pred             CceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHHHhCCCCCCcEEEEeCccchhc
Confidence            5689999999999999888    9999999999999999999996 444444  3456788887765    689999963


Q ss_pred             CcccccccccHHHHhhccCCCccCCC--CCcHHHHHHHHHHHHHhcChHHH-HHHHhCCCCcce---ecccceeEEEEec
Q 013008          320 GLPIGAALVTEKVASAINYGDHGSTF--AGSPLVCNAAIAVLDKISNPAFL-ASKLARNPHVKD---VRGLGLIIGIEFD  393 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~~~~~~t~--~~~~~~~aaa~aal~~~~~~~~~-~~~~~~~~~~~~---v~g~G~~~~~~~~  393 (451)
                        ..|++++++++++.++.......|  +.+|..+++++++++.+..+... ++++++......   ..-...++.+.+.
T Consensus       324 --~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~~G~~~~sPI~pI~ig  401 (476)
T PLN02955        324 --HGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKALSGVDISSPIISLVVG  401 (476)
T ss_pred             --cCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEeC
Confidence              347899999999988654333333  44567778888999988654433 223322111100   1112344555553


Q ss_pred             --CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          394 --VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       394 --~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                        ..+..+.+.|+++|+++.+...      ...+||+++..||+|||++++++|.++.+.+
T Consensus       402 ~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~  462 (476)
T PLN02955        402 NQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFD  462 (476)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhh
Confidence              3456789999999999885432      1469999999999999999999999887653

>PRK07179 hypothetical protein; Provisional

Probab=100.00  E-value=5e-31  Score=265.92  Aligned_cols=331  Identities=20%  Similarity=0.243  Sum_probs=237.8

Q ss_pred             hcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc---cCCC--CCHHHHHH
Q 013008           71 KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV---SNMY--YSIPQIEL  145 (451)
Q Consensus        71 ~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~--~~~~~~~l  145 (451)
                      ......|.+.+++..+++|.+++|.+|+.||||.          +||+|++++.+++++++..   +..+  ......+|
T Consensus        35 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~l  104 (407)
T PRK07179         35 ERVNKNWNGKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQF  104 (407)
T ss_pred             HhhccCcCCceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHH
Confidence            3344557788999999999999999999999976          7899999999999875322   2222  23468899


Q ss_pred             HHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC
Q 013008          146 AKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP  225 (451)
Q Consensus       146 ~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  225 (451)
                      +++|+++++.+.+++++||++||+.+++++..           +++.|++. ...|..........+            .
T Consensus       105 e~~la~~~g~~~~~~~~sG~~An~~~l~~l~~-----------~g~~v~~~-~~~h~s~~~~~~~~g------------~  160 (407)
T PRK07179        105 EKKLAAFTGFESCLLCQSGWAANVGLLQTIAD-----------PNTPVYID-FFAHMSLWEGVRAAG------------A  160 (407)
T ss_pred             HHHHHHHhCCCcEEEECCHHHHHHHHHHHhCC-----------CCCEEEEE-CCcCHHHHHHHHHCC------------C
Confidence            99999999988899999999999999997652           46666664 444444332222211            1


Q ss_pred             CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC--CCcccccccccc
Q 013008          226 GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEH  303 (451)
Q Consensus       226 ~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~~  303 (451)
                      .+..++++|+++|++++++.++++|+++++++++|.+.+    +++|+++|++||++||+||+|+.  +|++|.++ ...
T Consensus       161 ~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~  235 (407)
T PRK07179        161 QAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VAE  235 (407)
T ss_pred             eEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHh
Confidence            233455689999999997545789999999999998887    99999999999999999999973  34444432 345


Q ss_pred             cCCC--ccee--eecccccCCcccccccccHHHHhhccCC----CccCCCCCcHHHHHHHHHHHHHhcChH-HHHH----
Q 013008          304 YGIF--PDIM--TLAKPLAGGLPIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPA-FLAS----  370 (451)
Q Consensus       304 ~~~~--pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~~~~-~~~~----  370 (451)
                      +++.  +|++  +++|++++  ++|++++++++++.+...    .+++|+  ++..++++.++++.+...+ ..++    
T Consensus       236 ~~~~~~vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~~~  311 (407)
T PRK07179        236 LGLTSRVHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLHAN  311 (407)
T ss_pred             cCCCCCCCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            6653  4775  57899964  689999999988776422    222333  3555566667787765432 3222    


Q ss_pred             ------HHhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceee----ecCC--CCEEEEeCCCCCCHHHHHHHH
Q 013008          371 ------KLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVL----TAGK--GNVVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       371 ------~~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~----~~~~--~~~iri~~~~~~t~e~i~~~l  436 (451)
                            .++.+. + .+.+.+.++++.+..  ....+.+.|.++||++.    |...  .+.+||+++..+|+||+++++
T Consensus       312 ~~~l~~~L~~~g-~-~v~~~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~  389 (407)
T PRK07179        312 ARFLREGLSELG-Y-NIRSESQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVL  389 (407)
T ss_pred             HHHHHHHHHHcC-C-CCCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHH
Confidence                  122222 2 244667888887742  34668888999999743    3211  268999999999999999999


Q ss_pred             HHHHHHHHHH
Q 013008          437 EILCKTLPVL  446 (451)
Q Consensus       437 ~~l~~~l~~~  446 (451)
                      ++|++++++.
T Consensus       390 ~~l~~~~~~~  399 (407)
T PRK07179        390 EVCREARDEV  399 (407)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=100.00  E-value=3.5e-31  Score=264.64  Aligned_cols=314  Identities=16%  Similarity=0.242  Sum_probs=231.8

Q ss_pred             EeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHH
Q 013008          101 LDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus       101 iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~  174 (451)
                      |||.++.+   ||. .||++++++.+++++++.++.     ++....+.+|+++++++++.+..++++||+.|+..++..
T Consensus         1 ~~f~s~dy---Lgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~   77 (392)
T PLN03227          1 LNFATHDF---LSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAA   77 (392)
T ss_pred             CCCcCcCc---cCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHH
Confidence            57888777   887 699999999999988653321     122445899999999999988899999999999988886


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC---C-------
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---P-------  244 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~-------  244 (451)
                      +.           .++|.||+.++.|.. ....+.++.            ..+..++++|++++++.++   .       
T Consensus        78 l~-----------~~GD~Vl~~~~~h~s-~~~~~~l~~------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~  133 (392)
T PLN03227         78 FA-----------KRGDLLVVDRGVNEA-LLVGVSLSR------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKR  133 (392)
T ss_pred             hC-----------CCCCEEEEeccccHH-HHHHHHHcC------------CeEEEeCCCCHHHHHHHHHHhhhhcccccc
Confidence            43           168888888877644 333322221            2345567788777776542   1       


Q ss_pred             ---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc--CCCcccccccccccCCCc----ceeeecc
Q 013008          245 ---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC--GLGRTGYLWAHEHYGIFP----DIMTLAK  315 (451)
Q Consensus       245 ---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--g~gr~G~~~~~~~~~~~p----di~t~sK  315 (451)
                         .++.+|++||+++++|.+++    +++|+++|++||+++|+||+|+  .+|++|. ++.+++|+.|    |++++|+
T Consensus       134 ~~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sl  208 (392)
T PLN03227        134 KPTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSL  208 (392)
T ss_pred             ccCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeec
Confidence               24788999999999998887    9999999999999999999997  2344455 5788999988    9988764


Q ss_pred             cccCCcccccccccHHHHhhccCCCccCCCCCc--HHHHHHHHHHHHH-hcChHHHHH-----------HH-hCCCCcce
Q 013008          316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGS--PLVCNAAIAVLDK-ISNPAFLAS-----------KL-ARNPHVKD  380 (451)
Q Consensus       316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~--~~~~aaa~aal~~-~~~~~~~~~-----------~~-~~~~~~~~  380 (451)
                      +-+.|...|++++++++++.++...+..+|+++  |+.++|++++++. ++.++..++           +. ..+|.+.+
T Consensus       209 sk~~g~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~  288 (392)
T PLN03227        209 ENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALK  288 (392)
T ss_pred             hhhhhccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            433345667888999998877655667788876  8788888877754 445555444           22 23455556


Q ss_pred             ecc--------cceeEEEEecCC-----------hHHHHHHHHHCCceeeecC----------CCCEEEEeCCCCCCHHH
Q 013008          381 VRG--------LGLIIGIEFDVS-----------ATPVVDACRDSGLLVLTAG----------KGNVVRLVPPLIISEQE  431 (451)
Q Consensus       381 v~g--------~G~~~~~~~~~~-----------~~~~~~~l~~~Gv~~~~~~----------~~~~iri~~~~~~t~e~  431 (451)
                      +|+        .|.++.+++...           ...+++.|+++|+++.+.+          ++..+|++++..||+||
T Consensus       289 ~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~ee  368 (392)
T PLN03227        289 LRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTRED  368 (392)
T ss_pred             cccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHH
Confidence            665        355788888321           2478899999999886422          13568999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013008          432 LDQAVEILCKTLPVL  446 (451)
Q Consensus       432 i~~~l~~l~~~l~~~  446 (451)
                      |++++++|+++++++
T Consensus       369 i~~~~~~l~~~~~~~  383 (392)
T PLN03227        369 IDKLLTVLGEAVEAI  383 (392)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998775

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=100.00  E-value=1.6e-30  Score=260.46  Aligned_cols=330  Identities=22%  Similarity=0.176  Sum_probs=236.9

Q ss_pred             CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHh
Q 013008           77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLV  150 (451)
Q Consensus        77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~  150 (451)
                      |...| ++.+++|.++|+ +|++||||.++.   ++|| ++|+|++++.++++++.....     .+......+++++++
T Consensus        20 ~~~~~-~~~~~~g~~~~~-~g~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la   94 (385)
T PRK05958         20 YRSLR-PREGGAGRWLVV-DGRRMLNFASND---YLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELA   94 (385)
T ss_pred             Ccccc-ccccCCCceeEe-CCceEEEeeCCC---cccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHH
Confidence            33444 567999999997 999999999975   3887 789999999999987542211     123556889999999


Q ss_pred             hccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEe
Q 013008          151 ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV  230 (451)
Q Consensus       151 ~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (451)
                      ++++.+.++++++|++++..+++.+.   +        +++.|++.++. |+.......+.+.            .+..+
T Consensus        95 ~~~~~~~~i~~~~g~~~~~~~l~~~~---~--------~gd~V~~~~~~-~~~~~~~~~~~g~------------~~~~~  150 (385)
T PRK05958         95 EWFGAERALLFSSGYAANLAVLTALA---G--------KGDLIVSDKLN-HASLIDGARLSRA------------RVRRY  150 (385)
T ss_pred             HHhCCCcEEEECcHHHHHHHHHHHhC---C--------CCCEEEEeCcc-CHHHHHHHHhcCC------------ceEEe
Confidence            99987777888899999988777442   2        57888877665 5554444333321            23345


Q ss_pred             eCCCHHHHHHhcCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-C-CCccccccccccc--
Q 013008          231 EYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHY--  304 (451)
Q Consensus       231 ~~~d~~~le~~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~--  304 (451)
                      +.+|+++++++++..  ++++++++++++++|...+    +++|+++|++||++||+||+|+ | +++.|..+ ....  
T Consensus       151 ~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~  225 (385)
T PRK05958        151 PHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGL  225 (385)
T ss_pred             CCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhhCC
Confidence            567899999999742  5788999999888887666    9999999999999999999995 3 34444332 2212  


Q ss_pred             CCCcc---eeeecccccCCcccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcCh-HHHHH--------
Q 013008          305 GIFPD---IMTLAKPLAGGLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNP-AFLAS--------  370 (451)
Q Consensus       305 ~~~pd---i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~-~~~~~--------  370 (451)
                      ...+|   +.++||++++  +.|++++++++++.+...  .+..+.+.+++.++++.++|+.+++. ...++        
T Consensus       226 ~~~~~~i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l  303 (385)
T PRK05958        226 AGEPDVILVGTLGKALGS--SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARL  303 (385)
T ss_pred             CCCCceEEEEechhhccc--CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            22455   5689999974  348888999988876432  23334557888888888999876543 33333        


Q ss_pred             --HHhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          371 --KLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       371 --~~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                        .++..+ +..+.+.|.++++.++.  ...++.+.|.++||.+.+...      .+++|++++..++++++++++++|+
T Consensus       304 ~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~  382 (385)
T PRK05958        304 RAGLRALG-FQLMDSQSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALA  382 (385)
T ss_pred             HHHHHHcC-CCcCCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence              112222 22345678888888742  456799999999999976321      2689999999999999999999998


Q ss_pred             HHH
Q 013008          441 KTL  443 (451)
Q Consensus       441 ~~l  443 (451)
                      +++
T Consensus       383 ~~~  385 (385)
T PRK05958        383 EAL  385 (385)
T ss_pred             hcC
Confidence            753

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=100.00  E-value=4.6e-30  Score=258.02  Aligned_cols=335  Identities=20%  Similarity=0.213  Sum_probs=237.6

Q ss_pred             CCCceEEEeecccEEEecCCCEEEeeccCcccccCCCC-CHHHHHHHHHHHhhcccc--cCC---CCCHHHHHHHHHHhh
Q 013008           78 NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHV--SNM---YYSIPQIELAKRLVA  151 (451)
Q Consensus        78 ~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~--~~~---~~~~~~~~l~~~l~~  151 (451)
                      .+.|..+.+++|.++++.+|++||||.++.+   ||++ +|++++++.+++++.+.+  +..   +..+.+.+|++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~---lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~   94 (393)
T TIGR01822        18 FKSERIITSPQGADIRVADGREVLNFCANNY---LGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAA   94 (393)
T ss_pred             CCcccccccCCCceEEecCCceEEEeeCCCc---cccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHH
Confidence            3567788899999999989999999999965   7885 899999999999875322  111   124457899999999


Q ss_pred             ccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee
Q 013008          152 CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE  231 (451)
Q Consensus       152 ~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (451)
                      +++.+.+++++||++|+..++.++.           .++|.|++.++.|+..... +.+.+..            ...++
T Consensus        95 ~~g~~~~ii~~~~~~a~~~~~~~l~-----------~~gd~vi~~~~~~~s~~~~-~~~~~~~------------~~~~~  150 (393)
T TIGR01822        95 FLGTEDTILYASCFDANGGLFETLL-----------GAEDAIISDALNHASIIDG-VRLCKAK------------RYRYA  150 (393)
T ss_pred             HhCCCcEEEECchHHHHHHHHHHhC-----------CCCCEEEEeccccHHHHHH-HHhcCCc------------eEEeC
Confidence            9998888888999999998887653           1688899988877654332 2222111            12234


Q ss_pred             CCCHHHHHHhcCC---C--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CC-Cccccccccccc
Q 013008          232 YGNIEATRKLIQP---G--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLWAHEHY  304 (451)
Q Consensus       232 ~~d~~~le~~l~~---~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~~~~~~  304 (451)
                      ++|+++|++.+.+   .  ++++|+++++++++|.+.+    +++|+++|++||++||+||+|. |+ +..|.. ..+..
T Consensus       151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~  225 (393)
T TIGR01822       151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRG-SHELC  225 (393)
T ss_pred             CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-hHHhc
Confidence            5799999998863   2  6788999999999898776    9999999999999999999994 32 223322 22233


Q ss_pred             CC--Cccee--eecccccCCcccccccccHHHHhhccCCCccCCCC--CcHHHHHHHHHHHHHhcC-hHHHHH-------
Q 013008          305 GI--FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFA--GSPLVCNAAIAVLDKISN-PAFLAS-------  370 (451)
Q Consensus       305 ~~--~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~--~~~~~~aaa~aal~~~~~-~~~~~~-------  370 (451)
                      ++  .+|++  ++||+++| +++||+++++++++.+........++  .++..++++.++++.++. ++..++       
T Consensus       226 ~~~~~~di~~~s~sK~l~g-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  304 (393)
T TIGR01822       226 GVMGRVDIITGTLGKALGG-ASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRY  304 (393)
T ss_pred             CCCCCCeEEEEEChHHhhC-CCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            43  35666  78999874 68999999999998875432222333  356667778888877643 222222       


Q ss_pred             H---HhCCCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecC-----C-CCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          371 K---LARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-----K-GNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       371 ~---~~~~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~-----~-~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                      +   ++.. .+....+.+.++.+.+.  ....++++.|+++||++....     . ...+|+++++.+|++||++++++|
T Consensus       305 l~~~L~~~-g~~~~~~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l  383 (393)
T TIGR01822       305 FRERMEAA-GFDIKPADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAF  383 (393)
T ss_pred             HHHHHHHc-CCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence            1   1222 12212234555555552  235779999999999886321     1 146899999999999999999999


Q ss_pred             HHHHHHH
Q 013008          440 CKTLPVL  446 (451)
Q Consensus       440 ~~~l~~~  446 (451)
                      .++++++
T Consensus       384 ~~~~~~~  390 (393)
T TIGR01822       384 TRIGREL  390 (393)
T ss_pred             HHHHHHh
Confidence            9988764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=100.00  E-value=7.8e-30  Score=256.63  Aligned_cols=333  Identities=18%  Similarity=0.200  Sum_probs=234.6

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhcc
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACS  153 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~  153 (451)
                      .+..+++++|.++||.+|++||||+++.+   +|+ .+|++.+++.+++++..+.+.     .+..+.+.++++++++++
T Consensus        24 ~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~  100 (397)
T PRK06939         24 EERVITSPQGADITVADGKEVINFCANNY---LGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFL  100 (397)
T ss_pred             ccccccCCCCceEEecCCCeEEEeeccCc---cccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHh
Confidence            34577899999999999999999998754   788 689999999999877543221     123455789999999998


Q ss_pred             CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC
Q 013008          154 FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG  233 (451)
Q Consensus       154 ~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (451)
                      +.++.+++++|++|+..+++++.           +++|.||+.+|.|++..... ...+            ..+..++++
T Consensus       101 g~~~~i~~tsG~~a~~~~~~~l~-----------~~gd~vi~~~~~~~~~~~~~-~~~~------------~~~~~~~~~  156 (397)
T PRK06939        101 GTEDAILYSSCFDANGGLFETLL-----------GKEDAIISDALNHASIIDGV-RLCK------------AKRYRYANN  156 (397)
T ss_pred             CCCcEEEEcChHHHHHHHHHHhC-----------CCCCEEEEEhhhhHHHHHHH-HhcC------------CceEEeCCC
Confidence            85555566667999999887654           26899999999887654332 2211            122334556


Q ss_pred             CHHHHHHhcCC---C--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CC-CcccccccccccCC
Q 013008          234 NIEATRKLIQP---G--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLWAHEHYGI  306 (451)
Q Consensus       234 d~~~le~~l~~---~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~~~~~~~~  306 (451)
                      |++++++.++.   .  ++++|++++++++.|...+    +++|.++|++||++||+||+|. |+ +..|.. ....+++
T Consensus       157 d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~  231 (397)
T PRK06939        157 DMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGV  231 (397)
T ss_pred             CHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCC
Confidence            89999888852   2  5788888889888887555    9999999999999999999995 32 333321 2233444


Q ss_pred             --Cccee--eecccccCCcccccccccHHHHhhccCCCccCCC--CCcHHHHHHHHHHHHHhcC-hHHHHH---------
Q 013008          307 --FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTF--AGSPLVCNAAIAVLDKISN-PAFLAS---------  370 (451)
Q Consensus       307 --~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~--~~~~~~~aaa~aal~~~~~-~~~~~~---------  370 (451)
                        .+|++  ++||+++| +++||+++++++++.+........+  +.++..++++.++++.+.. ++..++         
T Consensus       232 ~~~~~i~~~S~sK~~~g-~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~  310 (397)
T PRK06939        232 MDRVDIITGTLGKALGG-ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFR  310 (397)
T ss_pred             CCCCcEEEEECHHHhCc-cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence              35666  89999964 5899999999999887643222222  2356667778888877643 222222         


Q ss_pred             -HHhCCCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecC-----C-CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          371 -KLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-----K-GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       371 -~~~~~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~-----~-~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                       .++.+. +....+.+.++.+.+.  .+..++++.|+++||.+.+..     . .+.+|+++++.++++++++++++|.+
T Consensus       311 ~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~  389 (397)
T PRK06939        311 EGMTAAG-FTLGPGEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEK  389 (397)
T ss_pred             HHHHHcC-CCcCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence             122222 2223355666655553  245779999999999887531     1 25799999998999999999999999


Q ss_pred             HHHHH
Q 013008          442 TLPVL  446 (451)
Q Consensus       442 ~l~~~  446 (451)
                      +++++
T Consensus       390 ~~~~~  394 (397)
T PRK06939        390 VGKEL  394 (397)
T ss_pred             HHHHh
Confidence            88764

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.98  E-value=6.8e-30  Score=256.08  Aligned_cols=332  Identities=17%  Similarity=0.177  Sum_probs=232.8

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhccccc-----CCCCCHHHHHHHHHHhhc
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-----NMYYSIPQIELAKRLVAC  152 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~  152 (451)
                      ..|.++.+++|.+|| .+|++||||.++.+   +|| ++|.+++++.+++++.....     ..+..+.+.++++++++.
T Consensus        15 ~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~   90 (385)
T TIGR01825        15 ISIRVLESAQGPRVR-VNGKEVINLSSNNY---LGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKF   90 (385)
T ss_pred             ccccccccCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHH
Confidence            468899999999999 99999999988633   799 89999999999988643321     122345688999999998


Q ss_pred             cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       153 ~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                      ++.+..+++++|++|+..+++++.           .+++.|++.++.| +.....+...+..            ...++.
T Consensus        91 ~g~~~~i~~~sG~~a~~~a~~~~~-----------~~gd~vi~~~~~~-~~~~~~~~~~g~~------------~~~~~~  146 (385)
T TIGR01825        91 KKTEAALVFQSGFNTNQGVLSALL-----------RKGDIVLSDELNH-ASIIDGLRLTKAT------------KKIYKH  146 (385)
T ss_pred             hCCCcEEEECcHHHHHHHHHHHhC-----------CCCCEEEEEcccc-HHHHHHHHhcCCc------------eEEeCC
Confidence            886666777788999998888654           1577777666654 4444333332211            122344


Q ss_pred             CCHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC--CCcccccccccccCCC
Q 013008          233 GNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGIF  307 (451)
Q Consensus       233 ~d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~~~~~~  307 (451)
                      .|++++++.+..   .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.  +++.|.. ...++++.
T Consensus       147 ~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~  221 (385)
T TIGR01825       147 ADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGRG-TVHHFGLE  221 (385)
T ss_pred             CCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCc-cHhhcCCC
Confidence            588888887762   35789999999998888776    89999999999999999999963  3444432 22334443


Q ss_pred             cc----eeeecccccCCcccccccccHHHHhhccCCCccC--CCCCcHHHHHHHHHHHHHhcC-hHHHHH-------H--
Q 013008          308 PD----IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGS--TFAGSPLVCNAAIAVLDKISN-PAFLAS-------K--  371 (451)
Q Consensus       308 pd----i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~--t~~~~~~~~aaa~aal~~~~~-~~~~~~-------~--  371 (451)
                      +|    +.+|||++++  +.||+++++++++.+.......  +...+|+.++++.++++.+.+ .+..++       +  
T Consensus       222 ~~~~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~  299 (385)
T TIGR01825       222 DKVDIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKA  299 (385)
T ss_pred             cCCcEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            43    4689999963  4588889999988875432211  223567888888888886643 233333       1  


Q ss_pred             -HhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          372 -LARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       372 -~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                       ++.. .+....+.+.++++.+..  ...++++.|+++||++.+...      ...+|++|++.+++|++++++++|+++
T Consensus       300 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~  378 (385)
T TIGR01825       300 GLGKL-GYDTGGSETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKV  378 (385)
T ss_pred             HHHHc-CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence             1122 122223444555555532  356799999999998853211      157999999999999999999999999


Q ss_pred             HHHH
Q 013008          443 LPVL  446 (451)
Q Consensus       443 l~~~  446 (451)
                      ++++
T Consensus       379 ~~~~  382 (385)
T TIGR01825       379 GKEL  382 (385)
T ss_pred             HHHh
Confidence            8764

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.97  E-value=2.8e-29  Score=253.46  Aligned_cols=318  Identities=19%  Similarity=0.205  Sum_probs=227.8

Q ss_pred             CCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhccccc----CCC-CCHHHHHHHHHHhhccCCCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS----NMY-YSIPQIELAKRLVACSFADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~----~~~-~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~  169 (451)
                      +|+++++|.++.+   +|. +||++++|+.+++++++.++    ..+ ..+.+.+|+++|+++++.+..++++||++|+.
T Consensus        44 ~~~~~~~~~sn~y---l~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~  120 (410)
T PRK13392         44 GPRRVTIWCSNDY---LGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSND  120 (410)
T ss_pred             CCceEEEEECCCc---cCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHH
Confidence            5789999999877   666 69999999999998865431    112 33458899999999999778888889999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC---CCC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGK  246 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~  246 (451)
                      .+++.+....         +++ +|+.+..+|+.....+...+.            .+..++++|.+.+++.++   .++
T Consensus       121 ~~i~~l~~~~---------~g~-~vi~~~~~h~s~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~~~~~~~  178 (410)
T PRK13392        121 AALSTLGKLL---------PGC-VILSDALNHASMIEGIRRSGA------------EKQVFRHNDLADLEEQLASVDPDR  178 (410)
T ss_pred             HHHHHHhcCC---------CCC-EEEEehhhhHHHHHHHHHcCC------------eEEEEeCCCHHHHHHHHHhccCCC
Confidence            9998554210         344 566677788877555444332            123345678888887775   346


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-C-CCcccccccccccCC--Cccee--eecccccCC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI--FPDIM--TLAKPLAGG  320 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~~~--~pdi~--t~sK~lg~G  320 (451)
                      +++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ | +|..|.+. .++.++  .+|++  +|||++|. 
T Consensus       179 t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~-  252 (410)
T PRK13392        179 PKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC-  252 (410)
T ss_pred             CEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc-
Confidence            789999999999998877    9999999999999999999997 4 35555443 344444  45766  89999974 


Q ss_pred             cccccccccHHHHhhccCCCc--cCCCCCcHHHHHHHHHHHHHhcChHHHHH--------H---HhCCCCcceeccccee
Q 013008          321 LPIGAALVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKISNPAFLAS--------K---LARNPHVKDVRGLGLI  387 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~--~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------~---~~~~~~~~~v~g~G~~  387 (451)
                       +.||+++++++++.++....  ..+.+.+|+.++++.++|+.++......+        +   ++.. .+...++.+.+
T Consensus       253 -~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  330 (410)
T PRK13392        253 -LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN-GIPVMPSPSHI  330 (410)
T ss_pred             -ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE
Confidence             33888889999887654322  23555678889999999987654322111        1   1222 22223455666


Q ss_pred             EEEEecC--ChHHHHHHHH-HCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFDV--SATPVVDACR-DSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       388 ~~~~~~~--~~~~~~~~l~-~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +.+.+..  ...++++.|+ ++||++.+...      ...+|+++++.+|++|+++++++|+++++++
T Consensus       331 ~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~  398 (410)
T PRK13392        331 VPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL  398 (410)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence            6555532  3457888887 57999986421      1579999999999999999999999988754

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.97  E-value=2.5e-29  Score=226.44  Aligned_cols=327  Identities=19%  Similarity=0.227  Sum_probs=238.6

Q ss_pred             ceEEEeecccEEEecCC--CEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhc
Q 013008           81 PVVLASGKGCKLYDAEG--REYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVAC  152 (451)
Q Consensus        81 p~~~~~~~G~~l~d~~G--~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~  152 (451)
                      ..++++.+|..+. ++|  +.+|.|+.|.|   ||. +||+|.+|-.+++++++.+..     .++...+..|+.+|+++
T Consensus        49 erVi~s~q~p~i~-v~G~~k~ilnFcaNnY---LGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqf  124 (417)
T KOG1359|consen   49 ERVITSRQGPTIQ-VKGSDKKILNFCANNY---LGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQF  124 (417)
T ss_pred             eeEEeecccceEE-Eeccccceeeeccccc---ccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHH
Confidence            4567788998876 455  68999999888   998 799999999999999765522     13556699999999999


Q ss_pred             cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       153 ~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                      .+.|+.++++|+..||..++.++..            ...-|+.|...|.+.+..+.+...  ++              +
T Consensus       125 h~rED~ilypscfdANag~feail~------------pedAvfSDeLNhASIIdGirLckr--y~--------------h  176 (417)
T KOG1359|consen  125 HGREDTILYPSCFDANAGAFEAILT------------PEDAVFSDELNHASIIDGIRLCKR--YR--------------H  176 (417)
T ss_pred             hCCCceEEeccccccchHHHHHhcC------------hhhhhhccccccchhhhhhHHHhh--hc--------------c
Confidence            9999999999999999999997762            334566677889988877766531  11              1


Q ss_pred             CCHHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cC-CCcccccccccccCC-
Q 013008          233 GNIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CG-LGRTGYLWAHEHYGI-  306 (451)
Q Consensus       233 ~d~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg-~gr~G~~~~~~~~~~-  306 (451)
                      -|+..++..+.   +.+...|..+.++++.|.+.|    |++|.+|++|||+++.+||.| || ||.+|.+ .-+.+|+ 
T Consensus       177 ~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGrG-t~E~~~vm  251 (417)
T KOG1359|consen  177 VDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGRG-TAEEFGVM  251 (417)
T ss_pred             chhHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCCC-hHHHhCCC
Confidence            15666665554   457889999999999999999    999999999999999999998 55 4666654 4567776 


Q ss_pred             -Cccee--eecccccCCcccccccccHHHHhhccCCCccCCCC--CcHHHHHHHHHHHHHhc-ChHHHHH---HHhCCC-
Q 013008          307 -FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFA--GSPLVCNAAIAVLDKIS-NPAFLAS---KLARNP-  376 (451)
Q Consensus       307 -~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~--~~~~~~aaa~aal~~~~-~~~~~~~---~~~~~~-  376 (451)
                       .+|++  |+||++|| ...||..+++++++.+++....+-|+  .+|.....+.++++.+- ......+   ..+++. 
T Consensus       252 ~~vdiinsTLgKAlGg-a~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~  330 (417)
T KOG1359|consen  252 GDVDIINSTLGKALGG-ASGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFRE  330 (417)
T ss_pred             CcceehhhhhhhhhcC-CCCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             56665  89999985 24489999999999988765555554  34555556666676542 2222222   111111 


Q ss_pred             -----Ccceeccc-ceeEEEEe-c-CChHHHHHHHHHCCceeeec-------CCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          377 -----HVKDVRGL-GLIIGIEF-D-VSATPVVDACRDSGLLVLTA-------GKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       377 -----~~~~v~g~-G~~~~~~~-~-~~~~~~~~~l~~~Gv~~~~~-------~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                           .+. +.+. -.+..+.+ + ..+.++.+.|+++|+++...       +. ..+|+.++.+||+||||++++++.+
T Consensus       331 ~me~aGft-Isg~~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gk-ariRVqiSAaHt~edid~~i~Af~~  408 (417)
T KOG1359|consen  331 FMEAAGFT-ISGASHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGK-ARIRVQISAAHTEEDIDRLIEAFSE  408 (417)
T ss_pred             HHHhcCce-ecCCCCCccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCc-eEEEEEEehhcCHHHHHHHHHHHHH
Confidence                 110 1111 12233333 1 34678899999999998633       33 5799999999999999999999999


Q ss_pred             HHHHHh
Q 013008          442 TLPVLD  447 (451)
Q Consensus       442 ~l~~~~  447 (451)
                      +.+...
T Consensus       409 vgr~~~  414 (417)
T KOG1359|consen  409 VGRFLN  414 (417)
T ss_pred             HHHhhc
Confidence            887543

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=1.1e-28  Score=245.28  Aligned_cols=325  Identities=19%  Similarity=0.162  Sum_probs=229.5

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cc-cCCCCCHHHHHHHHHHhhccC----CCe-EEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HV-SNMYYSIPQIELAKRLVACSF----ADR-VFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~-~~~~~~~~~~~l~~~l~~~~~----~e~-v~~~~sG~eA~~~  170 (451)
                      .++||+..|.+.  + ..++.+.+++.+++.... ++ ...+..+.++.+++++.+.++    .+. |++|+|+++|+..
T Consensus        28 ~~vi~l~iG~Pd--~-~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~  104 (393)
T COG0436          28 EDVIDLSIGEPD--F-PTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL  104 (393)
T ss_pred             CCEEEeCCCCCC--C-CCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence            468888877662  2 367889999999988753 22 222333446777777777755    444 9999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCCHHHHHHhcCCCCeEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      ++.+..           +++|.||+++|.|..+.......++.....    ++... ..+.  .|+++|++.+.+ ++++
T Consensus       105 ~~~a~~-----------~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v----~l~~~~~~f~--~d~~~l~~~i~~-ktk~  166 (393)
T COG0436         105 AFLALL-----------NPGDEVLIPDPGYPSYEAAVKLAGGKPVPV----PLDEEENGFK--PDLEDLEAAITP-KTKA  166 (393)
T ss_pred             HHHHhc-----------CCCCEEEEeCCCCcCHHHHHHhcCCEEEEE----eCCcCccCCc--CCHHHHHhhcCc-cceE
Confidence            999777           379999999999988876665555543321    11111 0111  289999999987 5666


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccc-ccccC---CCcceeeecccccC-Cccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWA-HEHYG---IFPDIMTLAKPLAG-GLPI  323 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~-~~~~~---~~pdi~t~sK~lg~-G~~i  323 (451)
                      |+++..++++|. ++++++|++|+++|++||++||+||+|.+|.+.|. ... .+..+   ....+-+|||.++. |||+
T Consensus       167 i~ln~P~NPTGa-v~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRv  245 (393)
T COG0436         167 IILNSPNNPTGA-VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRI  245 (393)
T ss_pred             EEEeCCCCCcCc-CCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccce
Confidence            666554445554 67999999999999999999999999999977773 221 22222   12334479999995 9999


Q ss_pred             cccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHH--------HHH------HHhCCCCcceec-ccce-
Q 013008          324 GAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF--------LAS------KLARNPHVKDVR-GLGL-  386 (451)
Q Consensus       324 G~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~--------~~~------~~~~~~~~~~v~-g~G~-  386 (451)
                      ||++++ +++++.+.......+++.+.++|.|+.++|+.-...++        .++      .+.+.+.+.... +.|. 
T Consensus       246 G~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~  325 (393)
T COG0436         246 GWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAF  325 (393)
T ss_pred             eEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeE
Confidence            999999 88888876555566778999999999999985322112        222      233444344444 4454 


Q ss_pred             eEEEEec--CChHHHHHHHHHC-CceeeecCC-C-----CEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          387 IIGIEFD--VSATPVVDACRDS-GLLVLTAGK-G-----NVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       387 ~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~~-~-----~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +++..+.  .+..+|+.+|+++ ||.+.|+.. +     +++|+  +++.+++++++++++|.+.++..
T Consensus       326 Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRi--s~~~~~~~l~~a~~rl~~~~~~~  392 (393)
T COG0436         326 YLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRL--SLATSEETLEEALRRLARFLAEY  392 (393)
T ss_pred             EEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEE--EEecCHHHHHHHHHHHHHHHHhc
Confidence            4555554  4678999999865 899998732 1     46777  67778899999999999988754

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.97  E-value=3.3e-28  Score=241.39  Aligned_cols=321  Identities=20%  Similarity=0.177  Sum_probs=225.4

Q ss_pred             EEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCCe
Q 013008           84 LASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADR  157 (451)
Q Consensus        84 ~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e~  157 (451)
                      +.++.|.++. .+|++||||.+|.   ++|+ .||++++++.++++++.....     ....+...++++.++++++.+.
T Consensus         3 ~~~~~~~~~~-~~g~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~   78 (360)
T TIGR00858         3 LDRGPGPEVV-RDGRRLLNFSSND---YLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEA   78 (360)
T ss_pred             cccCCCCeEE-ECCceEEecccCC---cccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCC
Confidence            3578999997 7999999999983   5896 789999999999987443211     1223557889999999988666


Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHH
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA  237 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  237 (451)
                      .+++++|++++..+++++.   +        +++.|++.++.|.... ......+            ..+..++..|+++
T Consensus        79 ~i~~~~G~~~~~~~l~~~~---~--------~gd~v~~~~~~~~~~~-~~~~~~g------------~~~~~~~~~d~~~  134 (360)
T TIGR00858        79 ALLFSSGYLANVGVISALV---G--------KGDLILSDALNHASLI-DGCRLSG------------ARVRRYRHNDVEH  134 (360)
T ss_pred             EEEECchHHHHHHHHHHhC---C--------CCCEEEEEccccHHHH-HHHHhcC------------CceEEecCCCHHH
Confidence            6666778899888777543   1        5788888887765443 3322222            1233445568999


Q ss_pred             HHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--cccccccCCCcc---
Q 013008          238 TRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHYGIFPD---  309 (451)
Q Consensus       238 le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~~~~pd---  309 (451)
                      |++.++.   .++++|+++++++++|...+    +++|.++|++||+++|+||+|+ +|..+.  ......+++.++   
T Consensus       135 l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~  209 (360)
T TIGR00858       135 LERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVD  209 (360)
T ss_pred             HHHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCc
Confidence            9999863   24788899998888887666    9999999999999999999996 333321  112333445444   


Q ss_pred             --eeeecccccCCcccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcCh-HHHHH----------HHhC
Q 013008          310 --IMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNP-AFLAS----------KLAR  374 (451)
Q Consensus       310 --i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~~-~~~~~----------~~~~  374 (451)
                        +.++||++++  +.||+++++++++.+....  +..+.+.++..++++.++++.++.. ...++          .+++
T Consensus       210 i~i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~  287 (360)
T TIGR00858       210 IQVGTLSKALGS--YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEA  287 (360)
T ss_pred             EEEEechhhhhc--cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence              5689999975  3489999999888775322  2223345677788888888866432 22222          2233


Q ss_pred             CCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecC------CCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          375 NPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       375 ~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~------~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      ++ +......|.++++.+..  +..++.+.|.++||++.+..      .++.+|++++..++++++++++++|+
T Consensus       288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       288 LG-FTLMPSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             cC-CccCCCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            33 22234567788888742  35689999999999997531      12589999999999999999999874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.96  E-value=9.2e-28  Score=239.01  Aligned_cols=315  Identities=17%  Similarity=0.165  Sum_probs=220.3

Q ss_pred             CEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcc-------cccCC-----CCCHHHHHHHHHHhhccCCCeEEecCCH
Q 013008           98 REYLDLSSGIAVNALGH-GDADWIKAVVDQANVLT-------HVSNM-----YYSIPQIELAKRLVACSFADRVFFSNTG  164 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-------~~~~~-----~~~~~~~~l~~~l~~~~~~e~v~~~~sG  164 (451)
                      .+++||.|+.|   ||+ .+|++.+++.+++.++.       .+..+     ..+..+.+++++|+++++.+.+++++||
T Consensus         4 ~~~~~~~s~~Y---L~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG   80 (370)
T PRK05937          4 SLSIDFVTNDF---LGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSG   80 (370)
T ss_pred             CceEEeECCCc---cCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECCh
Confidence            46899999888   998 58999999999988752       22111     1345689999999999998888999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC
Q 013008          165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP  244 (451)
Q Consensus       165 ~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~  244 (451)
                      +.|+...+....            +++++|+.++.+|++...++.....            ....++++|+++|+++++.
T Consensus        81 ~~a~~~~~~~~~------------~~~d~ii~d~~~H~sv~~~~~~~~~------------~~~~~~~~d~~~l~~~l~~  136 (370)
T PRK05937         81 YMANLGLCAHLS------------SVTDYVLWDEQVHISVVYSLSVISG------------WHQSFRHNDLDHLESLLES  136 (370)
T ss_pred             HHHHHHHHHHhC------------CCCCEEEEEhhhhHHHHHHHHHcCC------------ceEEecCCCHHHHHHHHHh
Confidence            999875444321            2557999999999998777654211            1123467899999999862


Q ss_pred             -----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-C-CCcccccccccccC---CCcceeeec
Q 013008          245 -----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYG---IFPDIMTLA  314 (451)
Q Consensus       245 -----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~~---~~pdi~t~s  314 (451)
                           ++..+|+++++++++|.+.|    +++|.++|+++|+++|+||+|+ | +|..|.++. ..++   ..+|+.|||
T Consensus       137 ~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~-~~~~~~~~~~~~~tls  211 (370)
T PRK05937        137 CRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFC-HSLGYENFYAVLVTYS  211 (370)
T ss_pred             hhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchH-HhhCCCCCcEEEEech
Confidence                 34567889999999999888    9999999999999999999997 4 556654322 1222   236788999


Q ss_pred             ccccC-CcccccccccHHHHhhccC--CCccCCCCCcHHHHHHHHHHHHHhcChH--HHHH---HHhCCC-Ccceecccc
Q 013008          315 KPLAG-GLPIGAALVTEKVASAINY--GDHGSTFAGSPLVCNAAIAVLDKISNPA--FLAS---KLARNP-HVKDVRGLG  385 (451)
Q Consensus       315 K~lg~-G~~iG~v~~~~~i~~~~~~--~~~~~t~~~~~~~~aaa~aal~~~~~~~--~~~~---~~~~~~-~~~~v~g~G  385 (451)
                      |++|+ |   +.+++.+++.+.+..  .....+.+.+|+.++++.++++.+.+..  ..++   +.+.+. .+. ..+.+
T Consensus       212 K~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~-~~~~~  287 (370)
T PRK05937        212 KALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFS-SAAPG  287 (370)
T ss_pred             hhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-CCCCC
Confidence            99975 4   445566665554431  2233444568888888888998875432  2222   111111 011 11223


Q ss_pred             eeEEEEec-CChHHHHHHHHHCCceeeecC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          386 LIIGIEFD-VSATPVVDACRDSGLLVLTAG--KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       386 ~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~--~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ....+.+. .....+.+.|.++||++....  ....+|++++..+|+||++++++.|+++++++..
T Consensus       288 ~~~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~  353 (370)
T PRK05937        288 CVQPIFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK  353 (370)
T ss_pred             CEEEEEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            33334443 345678888889999887432  1357999999999999999999999999987653

>PLN02483 serine palmitoyltransferase

Probab=99.96  E-value=3.8e-27  Score=241.27  Aligned_cols=317  Identities=17%  Similarity=0.164  Sum_probs=223.9

Q ss_pred             cCCCEEEeeccCcccccCCCC--CHHHHHHHHHHHhhcccc--cC---CCCCHHHHHHHHHHhhccCCCeEEecCCHHHH
Q 013008           95 AEGREYLDLSSGIAVNALGHG--DADWIKAVVDQANVLTHV--SN---MYYSIPQIELAKRLVACSFADRVFFSNTGTEA  167 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~--~~---~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA  167 (451)
                      .+++++|+|.|+.+   ||..  +|.+.+++.+++++++.+  +.   .+.+..+.+|+++++++++.+..+++++|+.+
T Consensus        97 ~~~~~~~n~~s~~Y---Lgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~a  173 (489)
T PLN02483         97 TKTRRCLNLGSYNY---LGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYAT  173 (489)
T ss_pred             CCCceEEEeecCCc---cCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHH
Confidence            35789999999887   8874  677888888888876542  11   23466799999999999997777777889999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC---
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP---  244 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---  244 (451)
                      +..++.++.           .++|.||+.+++|+... ......+            ..+..++++|+++|+++++.   
T Consensus       174 n~~~i~al~-----------~~Gd~Vi~d~~~h~s~~-~~~~~~G------------a~v~~~~~~d~~~le~~l~~~i~  229 (489)
T PLN02483        174 NSTIIPALI-----------GKGGLIISDSLNHNSIV-NGARGSG------------ATIRVFQHNTPSHLEEVLREQIA  229 (489)
T ss_pred             HHHHHHHhC-----------CCCCEEEEcchhhHHHH-HHHHHcC------------CeEEEEeCCCHHHHHHHHHhhhh
Confidence            998887654           16888887777776543 3322222            33556778888888877641   


Q ss_pred             ---C------CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC--CCcccccccccccCCCc---ce
Q 013008          245 ---G------KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGIFP---DI  310 (451)
Q Consensus       245 ---~------~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~~~~~~p---di  310 (451)
                         .      ...+|++|++.++.|.+.+    +++|+++|++||++||+||+|+-  +|++|.+ ..+++++.|   |+
T Consensus       230 ~~~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~~~dI  304 (489)
T PLN02483        230 EGQPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPADVDI  304 (489)
T ss_pred             ccccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcccCcE
Confidence               1      1358889999999998887    99999999999999999999962  3445543 345556543   55


Q ss_pred             e--eecccccCCcccccccccHHHHhhccCCCccCCCC--CcHHHHHHHHHHHHHhcCh-------HHHHH---------
Q 013008          311 M--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFA--GSPLVCNAAIAVLDKISNP-------AFLAS---------  370 (451)
Q Consensus       311 ~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~--~~~~~~aaa~aal~~~~~~-------~~~~~---------  370 (451)
                      +  ||||++|+  +.||+++++++++.++......+++  .+|..++++.++|+.+..+       +..++         
T Consensus       305 ~~~SfSKs~g~--~GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~  382 (489)
T PLN02483        305 MMGTFTKSFGS--CGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFR  382 (489)
T ss_pred             EEEecchhccc--CceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHH
Confidence            5  89999974  3489999999999987544433343  4667777788888765321       11111         


Q ss_pred             -HHhCCCCccee-cccceeEEEEec--CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          371 -KLARNPHVKDV-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       371 -~~~~~~~~~~v-~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                       .++++. +... ...+.+.++.+.  ....++++.|+++||.+.+.+.      .+.+|+++++.+|+|+|++++++|+
T Consensus       383 ~~L~~~G-~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~  461 (489)
T PLN02483        383 SELQKMG-FEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVIS  461 (489)
T ss_pred             HHHHHCC-CcccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence             222222 1111 122345555542  2345799999999999985432      1578999999999999999999999


Q ss_pred             HHHHHH
Q 013008          441 KTLPVL  446 (451)
Q Consensus       441 ~~l~~~  446 (451)
                      ++++.+
T Consensus       462 ~~~~~~  467 (489)
T PLN02483        462 EVGDLV  467 (489)
T ss_pred             HHHHHh
Confidence            988765

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.96  E-value=3e-27  Score=222.12  Aligned_cols=331  Identities=15%  Similarity=0.145  Sum_probs=233.1

Q ss_pred             ccEEEecCC--CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC----CCeEEecC
Q 013008           89 GCKLYDAEG--REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADRVFFSN  162 (451)
Q Consensus        89 G~~l~d~~G--~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~  162 (451)
                      .+.=||..+  ..+|-+.-...  -| -.+|+|++|++++++++.+++.....+...++..+.+++++    .|+++|++
T Consensus        14 ~s~KWd~~~g~~DvlPmWVADM--Df-~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p   90 (388)
T COG1168          14 NSLKWDAHPGNEDVLPMWVADM--DF-PTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVP   90 (388)
T ss_pred             CceeccccCCCCCcceeeeecc--cC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcC
Confidence            333455544  44444433322  13 27899999999999987776664444457888888888875    78999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhc
Q 013008          163 TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI  242 (451)
Q Consensus       163 sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l  242 (451)
                      +..-++..+|+..   |.        ++|.|++..|.||... .+....+......++.-.......    |+++||+.+
T Consensus        91 ~VVpgi~~~I~~~---T~--------~gd~Vvi~tPvY~PF~-~~i~~n~R~~i~~pL~~~~~~y~i----D~~~LE~~~  154 (388)
T COG1168          91 GVVPGISLAIRAL---TK--------PGDGVVIQTPVYPPFY-NAIKLNGRKVIENPLVEDDGRYEI----DFDALEKAF  154 (388)
T ss_pred             cchHhHHHHHHHh---Cc--------CCCeeEecCCCchHHH-HHHhhcCcEEEeccccccCCcEEe----cHHHHHHHH
Confidence            9999999999954   43        7999999999998875 444455544444333221112222    899999999


Q ss_pred             CCCC-eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cccccccCCCcc-------eeee
Q 013008          243 QPGK-TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPD-------IMTL  313 (451)
Q Consensus       243 ~~~~-~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pd-------i~t~  313 (451)
                      .+.+ ...|+|+|.|+.|  .++++++|++|.+||.+||+++|+||+|+.+-..|. ...+.  .+.++       +++-
T Consensus       155 ~~~~vkl~iLCnPHNP~G--rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a--~ls~~~a~~~it~~sa  230 (388)
T COG1168         155 VDERVKLFILCNPHNPTG--RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA--SLSERFADNSITLTSA  230 (388)
T ss_pred             hcCCccEEEEeCCCCCCC--ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchh--hcChhhhcceEEEeec
Confidence            8665 4566677766654  689999999999999999999999999999866673 22221  22222       2344


Q ss_pred             ccccc-CCcccccccc-cHHHHhhccC-CCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCC
Q 013008          314 AKPLA-GGLPIGAALV-TEKVASAINY-GDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARN  375 (451)
Q Consensus       314 sK~lg-~G~~iG~v~~-~~~i~~~~~~-~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~  375 (451)
                      ||+++ +|+.+++++. ++++.+++.. .......+.|.+++.|..++++  +.+.|++.               +-+..
T Consensus       231 SKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~--~G~~WLd~L~~yl~~N~~~~~~~l~~~~  308 (388)
T COG1168         231 SKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYN--QGEPWLDELLEYLKDNRDYVADFLNKHL  308 (388)
T ss_pred             cccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH--hchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            79998 6899998776 5666555432 2334455678999999999998  46677666               44667


Q ss_pred             CCcceecccceeE-EEEec---CChHHHHHHHHHC-CceeeecC---C--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          376 PHVKDVRGLGLII-GIEFD---VSATPVVDACRDS-GLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       376 ~~~~~v~g~G~~~-~~~~~---~~~~~~~~~l~~~-Gv~~~~~~---~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      |.+....+.|+++ |+++.   .+..++.+.|+++ +|.+.++.   .  .+++|+  +++++++-+++++++|..+++.
T Consensus       309 P~v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~Rl--N~acpr~~L~eal~ri~~al~~  386 (388)
T COG1168         309 PGVKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRL--NFACPRAILEEALERLKRALKK  386 (388)
T ss_pred             CCcEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEE--ecCCCHHHHHHHHHHHHHHHhc
Confidence            8888788888764 56773   3445777888754 66666542   1  156777  8999999999999999999875


Q ss_pred             H
Q 013008          446 L  446 (451)
Q Consensus       446 ~  446 (451)
                      +
T Consensus       387 ~  387 (388)
T COG1168         387 R  387 (388)
T ss_pred             c
Confidence            4

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=4.1e-27  Score=234.45  Aligned_cols=312  Identities=19%  Similarity=0.191  Sum_probs=207.6

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH----HHHHHHHHHhhccC----CCeEEecCCHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI----PQIELAKRLVACSF----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~  170 (451)
                      ..+|+..|..  +++ .+|.+++++.+++.+.......|+..    .+..+++++.+.++    .++|++|+|+++++..
T Consensus        27 ~~i~l~~~~~--~~~-~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~  103 (368)
T PRK03317         27 VPVRLNTNEN--PYP-PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ  103 (368)
T ss_pred             ceeEecCCCC--CCC-CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence            4688887755  454 78899999998875421111222222    24445555544333    6799999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++++.           ++++.|++.+|+|+++.......+ .....   .+...+..    -|++++++++..+++++|
T Consensus       104 ~~~~~~-----------~~gd~v~v~~P~y~~~~~~~~~~g-~~~~~---~~~~~~~~----~d~~~l~~~~~~~~~~~i  164 (368)
T PRK03317        104 LLQAFG-----------GPGRTALGFVPSYSMHPIIARGTH-TEWVE---GPRAADFT----LDVDAAVAAIAEHRPDVV  164 (368)
T ss_pred             HHHHhc-----------CCCCEEEEeCCChHHHHHHHHhcC-CeeEE---cccCCCCC----CCHHHHHHHHhccCCCEE
Confidence            999765           268999999999998765443222 11111   01111111    278999999874445555


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee---eeccccc-CCcccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM---TLAKPLA-GGLPIGAA  326 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v  326 (451)
                      +++..++++|.+. +   ++++.++|+.++++||+||+|++|++.|........+..|+++   +|||++| +|+|+||+
T Consensus       165 ~l~~p~NPtG~~~-~---~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~  240 (368)
T PRK03317        165 FLTSPNNPTGTAL-P---LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL  240 (368)
T ss_pred             EEeCCCCCCCCCC-C---HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhh
Confidence            5555566667655 4   4555555555589999999999987666443344444456666   8999998 69999999


Q ss_pred             cccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceecccceeEEE-Ee
Q 013008          327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVRGLGLIIGI-EF  392 (451)
Q Consensus       327 ~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~g~G~~~~~-~~  392 (451)
                      ++++++++.+....  .+++.++++++++.++|+..  +.+.+.             .++.+. +....+.|.++.+ .+
T Consensus       241 ~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~  315 (368)
T PRK03317        241 AAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHA--DELLASVAALRAERDRVVAWLRELG-LRVAPSDANFVLFGRF  315 (368)
T ss_pred             hCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHHHHHCC-CEeCCCCCcEEEEecc
Confidence            99999999886433  46788999999999988742  222211             222222 2223444555444 33


Q ss_pred             cCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          393 DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       393 ~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                       .+...+.+.|.++||++.+.+..+++|+++.   +.+++++++++|+++++.
T Consensus       316 -~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~---~~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        316 -ADRHAVWQGLLDRGVLIRDVGIPGWLRVTIG---TPEENDAFLAALAEVLAT  364 (368)
T ss_pred             -CCHHHHHHHHHHCCEEEEeCCCCCeEEEecC---CHHHHHHHHHHHHHHHHH
Confidence             3567899999999999988765578999743   788999999999988753

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.95  E-value=5e-26  Score=229.11  Aligned_cols=329  Identities=13%  Similarity=0.070  Sum_probs=218.6

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----C-CeEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~-e~v~~~~sG~eA~  168 (451)
                      .+..+||..|... .+ ..+|.+.+++.+.+.... ..+  ..+..+.+..+++++.+.++    . ++|++|+|+++|+
T Consensus        38 ~~~~i~l~~g~~~-~~-~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al  115 (405)
T PRK06207         38 PGRPVDFSHGDVD-AH-EPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGAL  115 (405)
T ss_pred             CCCceecCCcCCC-CC-CCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence            3566788776553 23 256788898888776531 111  12233347778888877655    4 7899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++++.           +++|.|++.+|+|+++.......+.. ....+.....+...+  --|+++|+++++++...
T Consensus       116 ~~~~~~l~-----------~~Gd~Vlv~~P~y~~~~~~~~~~g~~-v~~v~~~~~~~~~~~--~~d~~~l~~~~~~~~k~  181 (405)
T PRK06207        116 FLAVAATV-----------ARGDKVAIVQPDYFANRKLVEFFEGE-MVPVQLDYLSADKRA--GLDLDQLEEAFKAGVRV  181 (405)
T ss_pred             HHHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHcCCE-EEEEeccccCcccCC--CcCHHHHHHhhhhcCeE
Confidence            99998665           26899999999998876444333221 111000000000000  02789999988754344


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccCC----Ccceeeeccccc-CCcc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGI----FPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~----~pdi~t~sK~lg-~G~~  322 (451)
                      ++++.|. +++| .+.+.+.+++|.++|++||++||+||+|..|...|... ....+..    ..-+.+|||+++ +|+|
T Consensus       182 v~l~~P~-NPTG-~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlR  259 (405)
T PRK06207        182 FLFSNPN-NPAG-VVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYR  259 (405)
T ss_pred             EEECCCC-CCCC-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccc
Confidence            5566664 4444 46789999999999999999999999999875444321 1111111    223447899999 7999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-ccee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~  387 (451)
                      +||+++++++++.+.........+.+.+++.++.++|+.  ..+++++              .+++++.+....+ .|++
T Consensus       260 iG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f  337 (405)
T PRK06207        260 LGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSE--PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSY  337 (405)
T ss_pred             eEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEE
Confidence            999999999998886443334455677888888877752  1222211              2234443433333 4788


Q ss_pred             EEEEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          388 IGIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       388 ~~~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +|+.+.   .+..++++.|+ ++||.+.|+..     ++++|++..  .+++++++++++|.+++++.+
T Consensus       338 l~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l~~~~  404 (405)
T PRK06207        338 LFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLIERYR  404 (405)
T ss_pred             EEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence            998884   24678999997 67999998641     367888655  479999999999999998765

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.95  E-value=4.3e-26  Score=228.03  Aligned_cols=323  Identities=15%  Similarity=0.112  Sum_probs=218.6

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~  174 (451)
                      +..+|++..+..  .++ .+|.+.+++.+++..... ..+.......++.++++++++  .+++++++|+++|+..+++.
T Consensus        27 ~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~  102 (380)
T PRK06225         27 DKEMIWMGQNTN--HLG-PHEEVREAMIRCIEEGEY-CKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRA  102 (380)
T ss_pred             cCCeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCC-CCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHH
Confidence            456888887644  454 789999999998865321 111222236778888888876  67899999999999999987


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE-EEc
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV-FVE  253 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav-i~e  253 (451)
                      +..           +++.|++.+|+|+.+..... ..+......+......+.    .-|++++++.+.++ +++| +++
T Consensus       103 ~~~-----------~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~----~~d~~~l~~~~~~~-~~~v~l~~  165 (380)
T PRK06225        103 FLS-----------PGDNAVTPDPGYLIIDNFAS-RFGAEVIEVPIYSEECNY----KLTPELVKENMDEN-TRLIYLID  165 (380)
T ss_pred             hcC-----------CCCEEEEcCCCCcchHHHHH-HhCceEEeeccccccCCc----cCCHHHHHhhcCCC-ceEEEEeC
Confidence            641           57889999999986543222 222111100000000011    12789999988754 5555 455


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccc-cCCCcceeeeccccc-CCcccccccccHH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH-YGIFPDIMTLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~-~~~~pdi~t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      |.+ ++|. .++.+.+++|.++|++||+++|+||+|.+|.. +....... .....++.+|||.+| +|+|+||++++++
T Consensus       166 p~N-ptG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~  242 (380)
T PRK06225        166 PLN-PLGS-SYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPD  242 (380)
T ss_pred             CCC-CCCc-CCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHH
Confidence            644 4454 56889999999999999999999999987632 22111111 122345668999998 6899999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCc--ceecccceeEEEEec--
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHV--KDVRGLGLIIGIEFD--  393 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~--~~v~g~G~~~~~~~~--  393 (451)
                      +++.+... ...+++.|.++++++.++|+..  .++.++              .++.++.+  ...+..|.++++.+.  
T Consensus       243 l~~~~~~~-~~~~~~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  319 (380)
T PRK06225        243 LIEVVKSI-VINDLGTNVIAQEAAIAGLKVK--DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA  319 (380)
T ss_pred             HHHHHHHH-HhcccCCCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccc
Confidence            99887643 2346777888888888777632  222211              33444322  224556888888873  


Q ss_pred             -CChHHHHHHHHHCCceeeecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          394 -VSATPVVDACRDSGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       394 -~~~~~~~~~l~~~Gv~~~~~~------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                       .+..++.+.|.++||.+.|+.      ..+.+|+++  ..++|++++++++|+++++++|+
T Consensus       320 ~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~--~~~~e~l~~~~~~l~~~~~~~~~  379 (380)
T PRK06225        320 GIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSF--SIPREQVEVFCEEFPDVVETLRT  379 (380)
T ss_pred             cCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEe--CCCHHHHHHHHHHHHHHHHHhhc
Confidence             357789999999999998752      124688864  55899999999999999998875

>PRK07682 hypothetical protein; Validated

Probab=99.95  E-value=1.5e-25  Score=224.02  Aligned_cols=321  Identities=13%  Similarity=0.053  Sum_probs=212.2

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA  171 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~a  171 (451)
                      ..|+|..+...  ++ .++.+.+++.+.++.....+  ..+....+.++++++.+.++    .+ +|++|+|+++|+..+
T Consensus        21 ~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~   97 (378)
T PRK07682         21 GVISLGVGEPD--FV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA   97 (378)
T ss_pred             CeEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence            46888887663  44 46678888888776421111  22233446677777766544    33 799999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE-
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV-  250 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav-  250 (451)
                      ++.+.           ++++.|++.+|+|+++.......+.... .   .+...+-.+  .-|+++|++++.+ +++++ 
T Consensus        98 ~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~~--~~d~~~l~~~~~~-~~~~v~  159 (378)
T PRK07682         98 MRAII-----------NPGDEVLIVEPSFVSYAPLVTLAGGVPV-P---VATTLENEF--KVQPAQIEAAITA-KTKAIL  159 (378)
T ss_pred             HHHhC-----------CCCCEEEEeCCCchhhHHHHHHcCCEEE-E---eecCCccCC--CCCHHHHHhhcCc-ccEEEE
Confidence            88664           2689999999999977544433322111 1   011100000  1278999998865 45555 


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc-cccCC---Ccceeeeccccc-CCccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYGI---FPDIMTLAKPLA-GGLPIGA  325 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~~---~pdi~t~sK~lg-~G~~iG~  325 (451)
                      ++.| ++++|. +++.+.+++|.++|++||+++|+||+|.+|.+.+..... ...+.   ...+.+|||.++ .|+|+||
T Consensus       160 ~~~p-~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~  237 (378)
T PRK07682        160 LCSP-NNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGF  237 (378)
T ss_pred             EECC-CCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhh
Confidence            5555 455554 678999999999999999999999999988654432111 11122   223458999998 7999999


Q ss_pred             ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ceeEEE
Q 013008          326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLIIGI  390 (451)
Q Consensus       326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~~  390 (451)
                      +++++++++.+.......+++.+++++.++.++|+..  +.+.++              .++++. +....+. |+++|+
T Consensus       238 ~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~p~g~~~~~~  314 (378)
T PRK07682        238 IAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAG--NDDVIRMRDSYRKRRNFFVTSFNEIG-LTCHVPGGAFYAFP  314 (378)
T ss_pred             hhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHCC-CccCCCCeeEEEEE
Confidence            9999999998764333345667889999988888632  112111              223332 2223343 456666


Q ss_pred             Eec---CChHHHHHHHH-HCCceeeecC---C--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          391 EFD---VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       391 ~~~---~~~~~~~~~l~-~~Gv~~~~~~---~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+.   .+..++++.|+ ++||.+.|+.   .  .+++|++..  .+++++++++++|.+++++++
T Consensus       315 ~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~~  378 (378)
T PRK07682        315 SISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVENKK  378 (378)
T ss_pred             eccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHhhcC
Confidence            652   35678988887 6799998863   1  367888655  579999999999999987653

>PRK07324 transaminase; Validated

Probab=99.95  E-value=7e-26  Score=225.68  Aligned_cols=325  Identities=14%  Similarity=0.162  Sum_probs=216.0

Q ss_pred             EecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHH
Q 013008           93 YDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANE  169 (451)
Q Consensus        93 ~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~  169 (451)
                      ++..|..++++..+...  + ..++.+ +++.+++......+  .......+|.+.++++++   .++|++|+|+++|+.
T Consensus        21 ~~~~~~~~~~~~~~e~~--~-~~~~~~-~~~~~~~~~~~~~Y--~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~   94 (373)
T PRK07324         21 YDIAESCIDSLTLEELL--A-LAGKNP-EAFYQELGQKKLTY--GWIEGSPEFKEAVASLYQNVKPENILQTNGATGANF   94 (373)
T ss_pred             cccccCCCCCCcHHHHH--h-ccCcch-HHHHHHHhcCCccC--CCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHH
Confidence            45566667777665441  2 255667 88887776532222  112224466677777653   689999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      .++..+.           +++|+|++..|+|..+.......+....    ..+..++..+.  .|++++++.+.+ ++++
T Consensus        95 ~~~~~l~-----------~~gd~Vl~~~P~y~~~~~~~~~~g~~v~----~v~~~~~~~~~--~d~~~l~~~~~~-~~kl  156 (373)
T PRK07324         95 LVLYALV-----------EPGDHVISVYPTYQQLYDIPESLGAEVD----YWQLKEENGWL--PDLDELRRLVRP-NTKL  156 (373)
T ss_pred             HHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHcCCEEE----EEecccccCCC--CCHHHHHHhCCC-CCcE
Confidence            9998664           2689999999999876543322222111    01111110000  278999988865 4556


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCCCcceeeeccccc-CCccccccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAAL  327 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~  327 (451)
                      |++...++++|. +.+++.+++|.++|++||+++|+||+|.++...+.... .+.++....+.+|||.++ .|+|+||++
T Consensus       157 i~i~~p~NPtG~-~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~  235 (373)
T PRK07324        157 ICINNANNPTGA-LMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIA  235 (373)
T ss_pred             EEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEe
Confidence            666555555554 57899999999999999999999999998755442111 112222233458999998 699999999


Q ss_pred             ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccc-eeEEEEe
Q 013008          328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLG-LIIGIEF  392 (451)
Q Consensus       328 ~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G-~~~~~~~  392 (451)
                      +++++++.+.......+++.+++++.++..+|+.  .+.++++              .+++++.+..+.+.| .++++.+
T Consensus       236 ~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~--~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~  313 (373)
T PRK07324        236 ANEEVIDILRKYRDYTMICAGVFDDMLASLALEH--RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKL  313 (373)
T ss_pred             cCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEe
Confidence            9999999887655555677888998888887752  1222221              233445454455554 4555555


Q ss_pred             c--CChHHHHHHHH-HCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          393 D--VSATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       393 ~--~~~~~~~~~l~-~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +  ....+++++|+ +.||.+.|+..   .+++|++  +..+++.+++++++|.+++++.
T Consensus       314 ~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        314 DVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             CCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHhc
Confidence            3  45678999876 67999998742   3678885  4567999999999999998753

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.95  E-value=1.2e-25  Score=210.37  Aligned_cols=314  Identities=18%  Similarity=0.159  Sum_probs=239.3

Q ss_pred             CEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccCC-----CCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSNM-----YYSIPQIELAKRLVACSFADRVFFSNTGTEANEAA  171 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~a  171 (451)
                      +++-=||||.|   ||. .||+|.+|+.+.+++.+.+.++     +.+..+.+|++.|+++.+.|..++++|..-||...
T Consensus       171 k~VtVWCSNDY---Lgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDst  247 (570)
T KOG1360|consen  171 KKVTVWCSNDY---LGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDST  247 (570)
T ss_pred             CceEEEecCcc---ccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchH
Confidence            56777899988   777 6999999999999986654322     34556899999999999999999999999999998


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC---CCCeE
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---PGKTA  248 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~a  248 (451)
                      +..+-+.          =.+.+|..|.+.|.+.+..+..++.+.            .++.+||+++|+++|+   +.-++
T Consensus       248 LftLak~----------lpgcei~SD~gNHASMI~GIrns~v~K------------~IFrHND~~hL~~lL~~~~~svPK  305 (570)
T KOG1360|consen  248 LFTLAKK----------LPGCEIFSDEGNHASMIQGIRNSRVPK------------HIFRHNDLDHLEQLLQSSPKSVPK  305 (570)
T ss_pred             HHHHHHH----------CCCcEEeccccchHHHHHHhhhcCCcc------------eeeccCCHHHHHHHHHhCCCCCCc
Confidence            8765432          256788889999998877666554332            2467899999999998   34578


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc--ccccccCC--Cccee--eecccccCCcc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL--WAHEHYGI--FPDIM--TLAKPLAGGLP  322 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~--~~~~~~~~--~pdi~--t~sK~lg~G~~  322 (451)
                      .|-+|.++++.|.+.|    |++|.++++|||++-.+||||. .|-+|..  +.-++.|+  +.||+  |++|++|.  -
T Consensus       306 ivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc--V  378 (570)
T KOG1360|consen  306 IVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC--V  378 (570)
T ss_pred             eEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhccc--c
Confidence            8999999999999999    9999999999999999999996 4445542  23456676  56776  79999974  2


Q ss_pred             cccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcCh--HHHHH-----------HH--hCCCCcceecccc
Q 013008          323 IGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNP--AFLAS-----------KL--ARNPHVKDVRGLG  385 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~-----------~~--~~~~~~~~v~g~G  385 (451)
                      .|||.+...++|.++..  .+..|.+.+|..++.|+++.+++..+  ..+++           ++  ..+|.+   ....
T Consensus       379 GGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi---~~pS  455 (570)
T KOG1360|consen  379 GGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVI---PNPS  455 (570)
T ss_pred             cceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCccc---CCCc
Confidence            28999999999998764  34567778999999999999998654  22222           22  223322   2223


Q ss_pred             eeEEEEec--CChHHHHHHHH-HCCceeeec-------CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          386 LIIGIEFD--VSATPVVDACR-DSGLLVLTA-------GKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       386 ~~~~~~~~--~~~~~~~~~l~-~~Gv~~~~~-------~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .++.+.+.  ..+..+++.|+ ++|+++...       |. ..+||.|...||.+-++.+++.+..+++++.
T Consensus       456 HIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~-E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~  526 (570)
T KOG1360|consen  456 HIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGT-ERLRIAPTPHHTPQMMNILVNALLDVWNEVG  526 (570)
T ss_pred             ceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccc-eeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            34444442  23456777777 569998743       33 5799999999999999999999999988753

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=2.7e-25  Score=220.63  Aligned_cols=306  Identities=19%  Similarity=0.189  Sum_probs=210.4

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a  175 (451)
                      .+++||.+|.+  ++| .+|.+.+++.+.++...+    ++.....++.+.++++++  .+++++++|+++++..++++.
T Consensus        29 ~~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~~~----~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~  101 (359)
T PRK03158         29 EKIVKLASNEN--PYG-PSPKVKEAIAAHLDELAL----YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRAL  101 (359)
T ss_pred             CceEEecCCCC--CCC-CCHHHHHHHHHHHHHhhc----CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHH
Confidence            36899998876  466 588999999988776432    223335677777877776  678999999999999888765


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI  255 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~  255 (451)
                      .           .+++.|++.+|+|+++...+...+ .....   .+.. +.    ..|++++++.+.+ ++++++++.+
T Consensus       102 ~-----------~~gd~v~~~~p~y~~~~~~~~~~g-~~~~~---~~~~-~~----~~d~~~l~~~~~~-~~~~v~i~~p  160 (359)
T PRK03158        102 L-----------NPGTNTVMAEPTFSQYRHNAIIEG-AEVRE---VPLK-DG----GHDLEAMLKAIDE-QTKIVWICNP  160 (359)
T ss_pred             h-----------CCCCEEEEcCCCHHHHHHHHHHcC-CeEEE---EecC-CC----CcCHHHHHHhcCC-CCCEEEEeCC
Confidence            4           168899999999998654432222 11111   1111 00    1278999888865 4555555544


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccc---ccccCCCcceeeeccccc-CCcccccccccH
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWA---HEHYGIFPDIMTLAKPLA-GGLPIGAALVTE  330 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~---~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~  330 (451)
                      ++++|.+ ++.+.+.++++.|+ +|+++|+||+|..|-..+. ...   .+.++...-+.+|||.+| .|+|+||+++++
T Consensus       161 ~NPtG~~-~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~  238 (359)
T PRK03158        161 NNPTGTY-VNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE  238 (359)
T ss_pred             CCCCCCC-CCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH
Confidence            6666664 56666777776664 6999999999987633221 111   112222223448999998 699999999999


Q ss_pred             HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCCh
Q 013008          331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSA  396 (451)
Q Consensus       331 ~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~~  396 (451)
                      ++++.+....  .+++.|++++.++.++|+   +.++.++              .++++ .+..+++.|.++|+.+....
T Consensus       239 ~~~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~g~~i~~~~~~~~  312 (359)
T PRK03158        239 ELIEKLNIAR--PPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEY-GLFYYPSQTNFIFVDTGRDA  312 (359)
T ss_pred             HHHHHHHHhc--CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeCCCcCcEEEEECCCCH
Confidence            9998886432  357789999999998885   2333222              22233 23345667889888875567


Q ss_pred             HHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          397 TPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      .++++.|+++||.+.|+.   .++++||++.   +.+++++++++|+++
T Consensus       313 ~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~  358 (359)
T PRK03158        313 NELFEALLKKGYIVRSGAALGFPTGVRITIG---LKEQNDKIIELLKEL  358 (359)
T ss_pred             HHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHh
Confidence            889999999999999863   2467899644   889999999999875

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.94  E-value=6e-25  Score=217.23  Aligned_cols=310  Identities=18%  Similarity=0.164  Sum_probs=211.7

Q ss_pred             CEEEeeccCcccccCCCC-CHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAA  171 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~a  171 (451)
                      ++|+.|+++.+   ||+. ||+|.++++++++++.+...     ....+...++++.++++++.+..+++++|++++..+
T Consensus         1 ~~~~~~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~   77 (349)
T cd06454           1 KKVLNFCSNDY---LGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGV   77 (349)
T ss_pred             CCceecccCCc---cccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHH
Confidence            46899999887   9996 99999999999987543211     134556889999999999877778888999999988


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC----CCe
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP----GKT  247 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~----~~~  247 (451)
                      ++.+..           +++.||+.++.|.. ........+.            .+..++..|.+.++++++.    .++
T Consensus        78 ~~~~~~-----------~gd~Vl~~~~~~~~-~~~~~~~~g~------------~~~~~~~~~~~~le~~i~~~~~~~~~  133 (349)
T cd06454          78 LSTLAG-----------KGDLIISDSLNHAS-IIDGIRLSGA------------KKRIFKHNDMEDLEKLLREARRPYGK  133 (349)
T ss_pred             HHHhcC-----------CCCEEEEehhhhHH-HHHHHHHcCC------------ceEEecCCCHHHHHHHHHHhhccCCC
Confidence            876541           57889988876543 3222222221            1223344578889888863    457


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc---CCCccee--eecccccCCc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY---GIFPDIM--TLAKPLAGGL  321 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~---~~~pdi~--t~sK~lg~G~  321 (451)
                      ++|+++++++++|...+    +++|.++|++||+++|+||+|. +|..+.. ......   ....|++  +++|.+++  
T Consensus       134 ~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--  206 (349)
T cd06454         134 KLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA--  206 (349)
T ss_pred             eEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhhcc--
Confidence            88899988888887766    8999999999999999999995 3322211 011111   1234554  78999975  


Q ss_pred             ccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH-------H---HhCCCCcceecc-ccee
Q 013008          322 PIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLAS-------K---LARNPHVKDVRG-LGLI  387 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~-------~---~~~~~~~~~v~g-~G~~  387 (451)
                      +.|++++++++++.+....  ...+.+.++..++++.++|+.+.+ +...++       +   ++.+. +..+.. .+.+
T Consensus       207 ~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~~~~  285 (349)
T cd06454         207 VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKELG-FPVGGSPSHII  285 (349)
T ss_pred             cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC-CcccCCCCCcE
Confidence            5588888999887765432  222335678888888999987654 222222       1   22222 111222 2333


Q ss_pred             EEEEec--CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          388 IGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       388 ~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      .++.+.  ....++.+.|.++||.+.+.+.      ++.+|++++...+++++++++++|+++
T Consensus       286 ~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         286 PPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             EEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            333332  3457899999999999876421      268999999889999999999999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=3.8e-25  Score=219.55  Aligned_cols=311  Identities=13%  Similarity=0.146  Sum_probs=217.1

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~  173 (451)
                      +++.+||+..|..  ++| .+|.+++++.+.+....    .++.....+|.+.++++++  .++|++++|+++++..+++
T Consensus        27 ~~~~~i~l~~nen--~~~-~~~~v~~a~~~~~~~~~----~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~   99 (366)
T PRK01533         27 GDHSFVKLASNEN--PFG-CSPRVLDELQKSWLDHA----LYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISR   99 (366)
T ss_pred             CCCceEEeCCCCC--CCC-CCHHHHHHHHHHHHhcC----cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            3567899988765  566 67889999988765532    2333335678888888876  7899999999999999998


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                      ++.           ++++.|++.+|+|.++...+...+ .....   .+...+     .-|+++|++.++++...++++.
T Consensus       100 ~l~-----------~~gd~vlv~~P~y~~~~~~~~~~g-~~v~~---v~~~~~-----~~d~~~l~~~~~~~~~~v~i~~  159 (366)
T PRK01533        100 AVL-----------KAGDNIVTAGATFPQYRHHAIIEG-CEVKE---VALNNG-----VYDLDEISSVVDNDTKIVWICN  159 (366)
T ss_pred             Hhc-----------CCCCEEEEcCCcHHHHHHHHHHcC-CEEEE---eecCCC-----CcCHHHHHHHhCcCCcEEEEeC
Confidence            764           168899999999988765543322 11111   111111     1278999998865444455555


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-ccccc---cCCCcceeeeccccc-CCcccccccc
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH---YGIFPDIMTLAKPLA-GGLPIGAALV  328 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~---~~~~pdi~t~sK~lg-~G~~iG~v~~  328 (451)
                      | ++++|. ..+.+.+++|.++|++++ ++|+||+|.+|-..+.. .....   .+...-+.+|||.+| +|+|+||+++
T Consensus       160 P-~NPTG~-~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~  236 (366)
T PRK01533        160 P-NNPTGT-YVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVG  236 (366)
T ss_pred             C-CCCCCC-CcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhC
Confidence            5 444554 568899999999998877 56779999876432211 11111   111223347999999 7999999999


Q ss_pred             cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC
Q 013008          329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV  394 (451)
Q Consensus       329 ~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~  394 (451)
                      ++++++.+....  .+++.|++++.++.++|+   +.++.++              .++.+ .+....+.|.|+++.+. 
T Consensus       237 ~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~~~~~nf~~~~~~-  309 (366)
T PRK01533        237 HEELIEKLNVVR--LPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKEN-EIPFYQSQTNFIFLPVE-  309 (366)
T ss_pred             CHHHHHHHHHhc--CCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCCCcCcEEEEeCC-
Confidence            999999886432  457889999999998885   3333322              22222 23345677899999874 


Q ss_pred             ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          395 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       395 ~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ....+.+.|+++||.+.+.  ++.+||+   ..+.++.++++++|+++++..+.
T Consensus       310 ~~~~~~~~l~~~GI~Vr~~--~~~iRis---~~~~~~~~~l~~al~~~~~~~~~  358 (366)
T PRK01533        310 NGGEIYEACAHAGFIIRPF--PNGVRIT---VGTREQNEGVISVLQQHFENKKR  358 (366)
T ss_pred             CHHHHHHHHHHCCcEEccC--CCceEEe---CCCHHHHHHHHHHHHHHHHhccc
Confidence            5678999999999999985  3678996   34889999999999999876543

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.94  E-value=2e-24  Score=216.27  Aligned_cols=320  Identities=19%  Similarity=0.145  Sum_probs=212.7

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAI  172 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al  172 (451)
                      .+++|..|...  ++ .++.+.+++.+.+.+....+  ..+..+.+..+++++.+.++    .+++++++|+++|+..++
T Consensus        25 ~~i~l~~g~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~  101 (382)
T PRK06108         25 GVLPLWFGESD--LP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA  101 (382)
T ss_pred             CeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence            46888888763  43 47889999998876532211  12233446777777766554    689999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVF  251 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi  251 (451)
                      +.+..           +++.|++.+|+|..+.......+. ....   .+... +..+  ..|+++|++.+.+ ++++|+
T Consensus       102 ~~l~~-----------~gd~vl~~~p~y~~~~~~~~~~g~-~~~~---v~~~~~~~~~--~~d~~~l~~~~~~-~~~~i~  163 (382)
T PRK06108        102 QALVG-----------PGDEVVAVTPLWPNLVAAPKILGA-RVVC---VPLDFGGGGW--TLDLDRLLAAITP-RTRALF  163 (382)
T ss_pred             HHhcC-----------CCCEEEEeCCCccchHHHHHHCCC-EEEE---eeCCCCCCCc--cCCHHHHHHhcCc-cceEEE
Confidence            86641           588999999999876543322221 1111   11111 0000  0278999998865 455555


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc-cccc-c-ccccCCCcc---eeeeccccc-CCcccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-GYLW-A-HEHYGIFPD---IMTLAKPLA-GGLPIG  324 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~~~-~-~~~~~~~pd---i~t~sK~lg-~G~~iG  324 (451)
                      ++..++++|. .++.+.+++|.++|++||+++|+||+|.++... +... . .......+.   +.+|||.++ +|+|+|
T Consensus       164 l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG  242 (382)
T PRK06108        164 INSPNNPTGW-TASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLG  242 (382)
T ss_pred             EECCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCccccee
Confidence            5444555564 568999999999999999999999999887443 2111 1 111111122   348999997 589999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ceeEE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLIIG  389 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~  389 (451)
                      |+++++++++.+.......+.+.+++.+.++.++|+..  ++++++              .++.++.+....+. |+++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~  320 (382)
T PRK06108        243 WLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG--EDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAF  320 (382)
T ss_pred             eeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEE
Confidence            99999999888764333345667889998888888632  222211              22344444434444 56667


Q ss_pred             EEec--CChHHHHHHHH-HCCceeeecC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          390 IEFD--VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       390 ~~~~--~~~~~~~~~l~-~~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.+.  .+..++++.|+ ++||.+.|+.     ..+++|+++..  +++++++++++|.++++
T Consensus       321 ~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        321 FRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             EeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            7774  34678888886 5799998753     13679997776  89999999999998874

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.94  E-value=8.4e-25  Score=220.07  Aligned_cols=317  Identities=15%  Similarity=0.096  Sum_probs=212.2

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccC-CCCCHHHHHHHHHHhhccC----C-CeEEecCCHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSN-MYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANE  169 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-~~~~~~~~~l~~~l~~~~~----~-e~v~~~~sG~eA~~  169 (451)
                      |.+++||..|...  ++ .++.+.+++.+.+.+.. +.+. .+....+..+++++.+..+    . ++|++|+|+++|+.
T Consensus        31 ~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~  107 (399)
T PRK07681         31 GHKMIDLSIGNPD--MP-PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLV  107 (399)
T ss_pred             CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHH
Confidence            5678999888652  43 56888899888775422 1111 2223336667777765533    5 68999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      .++++..           .++|.|++.+|+|.++.......+.... .   .+..++..+.  .|++++++.+.+ ++++
T Consensus       108 ~~~~~~~-----------~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~-~---v~~~~~~~~~--~d~~~l~~~~~~-~~k~  169 (399)
T PRK07681        108 HLPMVYA-----------NPGDIILVPDPGYTAYETGIQMAGATSY-Y---MPLKKENDFL--PDLELIPEEIAD-KAKM  169 (399)
T ss_pred             HHHHHhC-----------CCCCEEEECCCCccchHHHHHhcCCEEE-E---EecCCCCCCc--CCHHHHHHhccc-cceE
Confidence            9888654           2689999999999888755443332211 1   1111111010  278889888754 4555


Q ss_pred             EEEc-cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-c-ccc---cCCCcceeeeccccc-CCcc
Q 013008          250 VFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A-HEH---YGIFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       250 vi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~-~~~---~~~~pdi~t~sK~lg-~G~~  322 (451)
                      |++. |.| ++| .+.+++.+++|.++|++||++||+||+|.+|-..+... . ...   .+....+.+|||.++ .|+|
T Consensus       170 v~l~~P~N-PTG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR  247 (399)
T PRK07681        170 MILNFPGN-PVP-AMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSR  247 (399)
T ss_pred             EEEeCCCC-CcC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccce
Confidence            5555 644 445 46799999999999999999999999998874333211 1 111   112233558999998 7999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCccee-ccccee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDV-RGLGLI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v-~g~G~~  387 (451)
                      +||+++++++++.+........++.+.+.+.++.++|+.  .+.++++              .++.++ +... ...|++
T Consensus       248 iG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~~g~f  324 (399)
T PRK07681        248 IGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRN--GAAFCEKNRGIYQERRDTLVDGFRTFG-WNVDKPAGSMF  324 (399)
T ss_pred             eEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCeeeE
Confidence            999999999998886443344567788888888888863  1223222              223332 2222 334788


Q ss_pred             EEEEec--CChHHHHHHHHH-CCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          388 IGIEFD--VSATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       388 ~~~~~~--~~~~~~~~~l~~-~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      +|+.+.  ....++++.|++ +||.+.|+..     .+++|++..  .+++++++++++|++
T Consensus       325 ~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~  384 (399)
T PRK07681        325 VWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN  384 (399)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            888874  356789999887 8999988631     257888654  688999999999998

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.94  E-value=6.8e-25  Score=222.91  Aligned_cols=337  Identities=15%  Similarity=0.061  Sum_probs=214.3

Q ss_pred             eEEEeecccEEEecC----------CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHh
Q 013008           82 VVLASGKGCKLYDAE----------GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLV  150 (451)
Q Consensus        82 ~~~~~~~G~~l~d~~----------G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~  150 (451)
                      +....++|.+|...+          +...+||..|..   .....|.+.+++.+.......+ ...+..+.+..+++++.
T Consensus        59 i~~~~~~G~~v~~~~~~~~~~~~~~~~~~i~L~~g~p---~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~  135 (431)
T PRK15481         59 AQSQGRNGTVIRGSPSPVALEGGDPGTPLHDLAGGNP---DPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLR  135 (431)
T ss_pred             EEEeCCCceEEccCcchhhhcccCCcchhhhhhcCCC---ChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHh
Confidence            344556777664321          223566655533   1112356777777655432211 11111222334444433


Q ss_pred             hccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE
Q 013008          151 ACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF  229 (451)
Q Consensus       151 ~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (451)
                      ...+ .++|++|+|+++|+..+++++.           +++|.|++.+|+|.++...+...+.... .   .+...+.  
T Consensus       136 ~~~~~~~~Iiit~G~~~al~~~~~~l~-----------~pgd~Vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~g--  198 (431)
T PRK15481        136 DDCPVAFEIDLTSGAIDAIERLLCAHL-----------LPGDSVAVEDPCFLSSINMLRYAGFSAS-P---VSVDAEG--  198 (431)
T ss_pred             hccCCcCeEEEecCcHHHHHHHHHHhC-----------CCCCEEEEeCCCcHHHHHHHHHcCCeEE-e---eccCCCC--
Confidence            3223 4589999999999999999665           2689999999999888655544332211 1   1111110  


Q ss_pred             eeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHh-CCEEEEeccccCCCccccccccc-ccCCC
Q 013008          230 VEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA-GALLVFDEVQCGLGRTGYLWAHE-HYGIF  307 (451)
Q Consensus       230 ~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~~~~~-~~~~~  307 (451)
                         -|+++|+++++. +++++++.|..+|+.+..++.+.+++|.++|++| +++||+||+|..|...+...... .....
T Consensus       199 ---~~~~~l~~~~~~-~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~v  274 (431)
T PRK15481        199 ---MQPEKLERALAQ-GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRW  274 (431)
T ss_pred             ---CCHHHHHHHHhc-CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCE
Confidence               278999998865 4666666654333333567999999999999999 99999999998874322111111 11112


Q ss_pred             cceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHh
Q 013008          308 PDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLA  373 (451)
Q Consensus       308 pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~  373 (451)
                      .-+.+|||.++.|+|+||+++++++++.+.......+++.+.+++.++.++|+.-.-..++++              .++
T Consensus       275 i~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~  354 (431)
T PRK15481        275 ALIRSVSKALGPDLRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQ  354 (431)
T ss_pred             EEEeeeccccCCCceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234489999999999999999999988885433334456788999999988873211122222              122


Q ss_pred             CCCCcce-ecccceeEEEEecCChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          374 RNPHVKD-VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       374 ~~~~~~~-v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      .+. +.. .+..|+++|+.+.....++++.|.++||.+.|+..      ++.+|+++.. .+++++++++++|.+++.
T Consensus       355 ~~~-~~~~~p~gg~f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        355 QYG-IAIPSPGDGLNLWLPLDTDSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINRLAADLHQALN  430 (431)
T ss_pred             HcC-CccccCCCeEEEEEECCCCHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence            222 222 34568899998855567899999999999998531      2478997664 478999999999998874

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.94  E-value=1.3e-24  Score=217.88  Aligned_cols=321  Identities=16%  Similarity=0.098  Sum_probs=204.4

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc-cc--CCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~--~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA  167 (451)
                      +|+.++||..|..  .++ .+|.+.+++.+.+..... .+  ..+....+..+++++.+..+    .+ .|++|+|+++|
T Consensus        28 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a  104 (388)
T PRK07366         28 AGKELIDLSLGSS--DLP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG  104 (388)
T ss_pred             cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence            4667889888765  344 478899999887754211 11  11122335566666655433    55 69999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCe
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT  247 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  247 (451)
                      +..+++++.           +++|.|++.+|+|.++...+...+.... .   .+..+...+.  .|++++++.+.+ ++
T Consensus       105 l~~~~~~l~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~--~d~~~l~~~~~~-~~  166 (388)
T PRK07366        105 TAHLPLAVL-----------NPGDFALLLDPGYPSHAGGVYLAGGQIY-P---MPLRAENDFL--PVFADIPTEVLA-QA  166 (388)
T ss_pred             HHHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHhcCCEEE-E---EECCCccCCC--CCHHHHHHhhcc-cc
Confidence            999988655           2689999999999988655444332211 1   1111111111  267788776654 34


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc--ccccccC----CCcceeeeccccc-CC
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL--WAHEHYG----IFPDIMTLAKPLA-GG  320 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~--~~~~~~~----~~pdi~t~sK~lg-~G  320 (451)
                      ++|++.+.++++|. +.+.+.+++|.++|++||++||+||+|..|...+..  .......    ....+.+|||.+| .|
T Consensus       167 k~i~l~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G  245 (388)
T PRK07366        167 RLMVLSYPHNPTTA-IAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG  245 (388)
T ss_pred             eEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence            55555555555554 679999999999999999999999999887443321  1111111    1223348999997 79


Q ss_pred             cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccce
Q 013008          321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGL  386 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~  386 (451)
                      +|+||+++++++++.+........++..+..+.++.+++.  ..++++++              .++++......+..|+
T Consensus       246 lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~  323 (388)
T PRK07366        246 FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATM  323 (388)
T ss_pred             hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeE
Confidence            9999999999999887643333333333333445555553  22333332              2233332112345688


Q ss_pred             eEEEEecC----ChHHHHHHHH-HCCceeeecC---C--CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          387 IIGIEFDV----SATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       387 ~~~~~~~~----~~~~~~~~l~-~~Gv~~~~~~---~--~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      ++|+.+..    +..++++.|+ ++||.+.|+.   .  .+++|++..  .+++++++++++|.++
T Consensus       324 f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~  387 (388)
T PRK07366        324 YVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV--HDPDILEEAVERIAAF  387 (388)
T ss_pred             EEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence            88888742    3577888775 6799999862   1  257888654  5799999999999875

>PLN00175 aminotransferase family protein; Provisional

Probab=99.94  E-value=1.7e-24  Score=218.41  Aligned_cols=319  Identities=18%  Similarity=0.175  Sum_probs=212.6

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~  170 (451)
                      ...|||..|.+.  +. .++.+.+++.+.+++....+  ..+..+.+..+++++.+..+    .+ +|++|+|+++|+..
T Consensus        54 ~~~i~l~~G~P~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~  130 (413)
T PLN00175         54 HGAINLGQGFPN--FD-GPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAA  130 (413)
T ss_pred             CCeEecCCCCCC--CC-CCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHH
Confidence            357899888763  32 47889999998887521111  11222335666666665544    44 69999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++...           +++|.|++.+|+|..+.......+.... .   .+..+.. +  .-|++.|++.+.+ ++++|
T Consensus       131 ~~~~l~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~-~--~~~~~~l~~~~~~-~~k~i  191 (413)
T PLN00175        131 TILGLI-----------NPGDEVILFAPFYDSYEATLSMAGAKIK-T---VTLRPPD-F--AVPEDELKAAFTS-KTRAI  191 (413)
T ss_pred             HHHHhC-----------CCCCEEEEeCCCchhHHHHHHHcCCEEE-E---EECCccc-C--CCCHHHHHHhcCc-CceEE
Confidence            888654           2689999999999877544333222111 1   1111110 0  1278999999875 45666


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCC---Ccceeeeccccc-CCccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGI---FPDIMTLAKPLA-GGLPIGA  325 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~---~pdi~t~sK~lg-~G~~iG~  325 (451)
                      ++.+.++++|. +++.+.+++|.++|++||+++|+||+|..+.+.+.... .+..+.   ...+.+|||.++ .|+|+||
T Consensus       192 ~i~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~  270 (413)
T PLN00175        192 LINTPHNPTGK-MFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGW  270 (413)
T ss_pred             EecCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheee
Confidence            66555555564 67899999999999999999999999988744332111 111121   223447999998 7999999


Q ss_pred             ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ceeEEE
Q 013008          326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLIIGI  390 (451)
Q Consensus       326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~~  390 (451)
                      +++++++++.+.......+++.+++.+.++.++|+.  .+.++++              .++.++ +....+. |+++|+
T Consensus       271 ~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~g~~f~~~  347 (413)
T PLN00175        271 AIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRA--PESYYEELKRDYSAKKDILVEGLKEVG-FKVYPSSGTYFVMV  347 (413)
T ss_pred             eEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEE
Confidence            999999998876544445678889999999888863  2233222              222232 3323343 556777


Q ss_pred             Eec---C-ChHHHHHHHH-HCCceeeecC-------C-CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          391 EFD---V-SATPVVDACR-DSGLLVLTAG-------K-GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       391 ~~~---~-~~~~~~~~l~-~~Gv~~~~~~-------~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      .+.   . ...++++.|+ ++||.+.|+.       . .+.+||+..  .++|++++++++|.++++
T Consensus       348 ~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        348 DHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK  412 (413)
T ss_pred             eccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence            762   2 3568999887 4699998862       1 257888655  589999999999998875

>PRK08960 hypothetical protein; Provisional

Probab=99.94  E-value=2.7e-24  Score=215.63  Aligned_cols=321  Identities=15%  Similarity=0.098  Sum_probs=213.2

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHhhcc----CCCeEEecCCHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACS----FADRVFFSNTGTEANEA  170 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~----~~e~v~~~~sG~eA~~~  170 (451)
                      |..++++..|...  ++ .++.+.+++.+.+......  ...+..+.+..+++.+.+.+    ..++|++|+|+++|+..
T Consensus        31 ~~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~  107 (387)
T PRK08960         31 GHDVIHLEIGEPD--FT-TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL  107 (387)
T ss_pred             CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence            4567888887663  33 4788999999887642111  11122233556666665443    37899999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      ++++..           +++|.|++.+|+|.++.......+. ....   .+...+..+  .-|++.+++.++++...++
T Consensus       108 ~~~~~~-----------~~gd~vlv~~p~y~~~~~~~~~~g~-~~~~---v~~~~~~~~--~~d~~~l~~~~~~~~~~i~  170 (387)
T PRK08960        108 ASSLLV-----------DPGKHWLLADPGYPCNRHFLRLVEG-AAQL---VPVGPDSRY--QLTPALVERHWNADTVGAL  170 (387)
T ss_pred             HHHHhc-----------CCCCEEEEcCCCCcchHHHHHhcCC-eEEE---EecCcccCC--CCCHHHHHHHhCccceEEE
Confidence            988654           2689999999999887654433221 1111   111111000  0278999998876556667


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee---eeccccc-CCcccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM---TLAKPLA-GGLPIGAA  326 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v  326 (451)
                      ++.|.|+ +| ..++.+.+++|+++|++||+++|+||+|.++...+...  ......++++   +|||.+| .|+|+||+
T Consensus       171 i~~p~NP-tG-~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~~GlRiG~~  246 (387)
T PRK08960        171 VASPANP-TG-TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGMTGWRLGWL  246 (387)
T ss_pred             EECCCCC-CC-cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCCcccEEEEE
Confidence            7777554 44 45789999999999999999999999998874332211  1123334544   6899997 79999999


Q ss_pred             cccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc-eecccceeEEEE
Q 013008          327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK-DVRGLGLIIGIE  391 (451)
Q Consensus       327 ~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~-~v~g~G~~~~~~  391 (451)
                      ++++++++.+.......+.+.+.+.+.++.++++. ...+++++              .++.++... ..+..|+++|++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~  325 (387)
T PRK08960        247 VAPPAAVPELEKLAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYAD  325 (387)
T ss_pred             EcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEe
Confidence            99999998876544445566788998888888752 11222222              223333211 124457788888


Q ss_pred             ec---CChHHHHHHHH-HCCceeeecC---C---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          392 FD---VSATPVVDACR-DSGLLVLTAG---K---GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       392 ~~---~~~~~~~~~l~-~~Gv~~~~~~---~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.   .+..++++.|+ ++||.+.|+.   .   ++++|+++..  +.+++.+++++|.++++
T Consensus       326 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        326 ISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--SLPRLQEAVERIARGLR  386 (387)
T ss_pred             ccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            73   35677888876 5799999862   1   2578987663  78899999999988764

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.94  E-value=3.9e-24  Score=215.04  Aligned_cols=322  Identities=16%  Similarity=0.039  Sum_probs=208.2

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhccC-----CC-eEEecCCHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF-----AD-RVFFSNTGTEAN  168 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~-----~e-~v~~~~sG~eA~  168 (451)
                      .|+++|||..|...  ++ .++.+.+++.+.+.....+. ..+....+..+++++.+.++     .+ +|++|+|+++|+
T Consensus        27 ~~~~~i~l~~~~p~--~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al  103 (396)
T PRK09147         27 ADLPPISLSIGEPK--HP-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL  103 (396)
T ss_pred             cCCCeEecCCCCCC--CC-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence            47889999888763  43 46788888887665432211 11223346677777765544     24 899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCC---CceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008          169 EAAIKFARKFQRHSNPDSKEP---ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~---~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  245 (451)
                      ..+++++..           +   ++.|++.+|+|.++.......+.. ...   .|..++..+.  -|++++++.+.+ 
T Consensus       104 ~~~~~~l~~-----------~~~~gd~vlv~~P~y~~~~~~~~~~g~~-~~~---vp~~~~~~~~--~d~~~l~~~~~~-  165 (396)
T PRK09147        104 FAFAQTVID-----------RDGPGPLVVCPNPFYQIYEGAALLAGAE-PYF---LNCDPANNFA--PDFDAVPAEVWA-  165 (396)
T ss_pred             HHHHHHHcC-----------CCCCCCEEEEcCCCccchHHHHHhcCCE-EEE---eccCccccCc--cCHHHHHHHHhh-
Confidence            999996652           4   788999999998876544333221 111   1221111010  278889877754 


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--ccc-c---ccc-----CCCcceeeec
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWA-H---EHY-----GIFPDIMTLA  314 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~-~---~~~-----~~~pdi~t~s  314 (451)
                      +++++++...++++| .+++++.+++|.++|++|+++||+||+|..|...+.  ... .   ...     +...-+.+||
T Consensus       166 ~~k~i~l~nP~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  244 (396)
T PRK09147        166 RTQLLFVCSPGNPTG-AVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLS  244 (396)
T ss_pred             ccEEEEEcCCCCCcC-ccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccc
Confidence            445555443344444 467999999999999999999999999987743331  111 1   011     1122244799


Q ss_pred             cccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCCC-Ccce-
Q 013008          315 KPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARNP-HVKD-  380 (451)
Q Consensus       315 K~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~~-~~~~-  380 (451)
                      |.++ .|+|+||+++++++++.+.......+++.+++.+.++.+++.   .++++++           +.+.+. .+.. 
T Consensus       245 K~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  321 (396)
T PRK09147        245 KRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWN---DEAHVRENRALYREKFDAVTPILAPVLDVQ  321 (396)
T ss_pred             cccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9986 589999999999999887643333456678888888777763   2222221           111111 1221 


Q ss_pred             ecccceeEEEEecCChHHHHHHHH-HCCceeeecCC-----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          381 VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGK-----------GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       381 v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~-----------~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ....|+++|+++.....++++.|+ ++||.+.|+..           .+.+|+++  +.+++++++++++|.++++
T Consensus       322 ~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        322 LPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIAL--VAPLAECVEAAERIVDFCR  395 (396)
T ss_pred             CCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhc
Confidence            245688899888645677888886 67999987631           25677754  4578999999999998763

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=4.4e-24  Score=212.51  Aligned_cols=308  Identities=17%  Similarity=0.183  Sum_probs=210.5

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR  176 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~  176 (451)
                      .++++..|..  .+| .+|++.+++.+.+.....    |+.....+|.+.++++++  .++|++++|+++++..+++++.
T Consensus        33 ~~~~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~----Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~  105 (369)
T PRK08153         33 FRARIGANES--GFG-PSPSVIAAMREAAAEIWK----YGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV  105 (369)
T ss_pred             ceeEecCCCC--CCC-CCHHHHHHHHHHHHHhhc----CCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc
Confidence            4578887754  455 678899999887654221    222225678888888876  6799999999999999888654


Q ss_pred             HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE-EEccc
Q 013008          177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV-FVEPI  255 (451)
Q Consensus       177 ~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav-i~ep~  255 (451)
                                 ++++.|++.+|+|+++.......+.. ...   .|...+     ..|++++++.+...++++| +++|.
T Consensus       106 -----------~~gd~vlv~~p~y~~~~~~~~~~g~~-~~~---vp~~~~-----~~~~~~l~~~~~~~~~~~i~l~~P~  165 (369)
T PRK08153        106 -----------EPGDPVVTSLGAYPTFNYHVAGFGGR-LVT---VPYRDD-----REDLDALLDAARRENAPLVYLANPD  165 (369)
T ss_pred             -----------CCCCEEEECCCcchHHHHHHHHcCCe-EEE---eeCCCC-----CCCHHHHHHHhcccCCcEEEEeCCC
Confidence                       26899999999998776433222211 111   011111     1267888776654445555 44665


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc---eeeeccccc-CCcccccccccHH
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD---IMTLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd---i~t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      |++ |. +.+.+.+++|.++|++ +++||+||+|..|++.|......  ...++   +.+|||.+| +|+|+||++++++
T Consensus       166 NPt-G~-~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~  240 (369)
T PRK08153        166 NPM-GS-WHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAGARVGYAIGAPG  240 (369)
T ss_pred             CCC-CC-CCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcchheeeeecCHH
Confidence            555 54 5688889999998874 99999999998886544321111  12234   348999998 7999999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec---C
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD---V  394 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~---~  394 (451)
                      +++.+....  .+++.|+++++++.++|+   +++++++              .++..+ +...+..|.++++++.   .
T Consensus       241 ~~~~l~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g-~~~~p~~~~f~~~~~~~~~~  314 (369)
T PRK08153        241 TIKAFDKVR--NHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANG-LTPLPSATNFVAIDCGRDGA  314 (369)
T ss_pred             HHHHHHHhh--cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCC-CccCCCcCcEEEEECCCCcc
Confidence            998876432  357789999999998885   3333332              223333 2234556778887763   2


Q ss_pred             ChHHHHHHHHHCCceee-ecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          395 SATPVVDACRDSGLLVL-TAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       395 ~~~~~~~~l~~~Gv~~~-~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+..+.++|.++||.+. |+..  .+.+|++..   ++++++.++++|++++..++
T Consensus       315 ~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~~~~~~~~~~al~~~~~~~~  367 (369)
T PRK08153        315 FARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---PDEELDLFAEALPEALEAAR  367 (369)
T ss_pred             cHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHHHhh
Confidence            46788999999999995 4321  257888644   79999999999999987654

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.93  E-value=6.7e-24  Score=213.93  Aligned_cols=331  Identities=14%  Similarity=0.141  Sum_probs=213.3

Q ss_pred             ecCCCEEEeeccCcccccCC--CCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHhhccC----CCeEEecCCH
Q 013008           94 DAEGREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTG  164 (451)
Q Consensus        94 d~~G~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG  164 (451)
                      ..+|+..|+|..|.+.. +|  -.+|.+.+++.+.+++..   +.+..+....+..+++++.+.++    .++|++|+|+
T Consensus        28 ~~~~~~~i~l~~G~p~~-~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~  106 (409)
T PLN00143         28 EDDHRLAISFGFGDPSC-FECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGC  106 (409)
T ss_pred             cCCCCceeeCCCCCCCC-CCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecCh
Confidence            34678899999887641 12  267888899998887531   11122233346666666655433    6799999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCeeEeeCCCHHHHHHhc
Q 013008          165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLI  242 (451)
Q Consensus       165 ~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l  242 (451)
                      ++|+..+++++.           ++++.|++.+|+|+++.......+.... .   .+..  .+..    -|+++|++++
T Consensus       107 ~~al~~~~~~l~-----------~~gd~v~v~~P~y~~~~~~~~~~g~~~~-~---~~~~~~~~~~----~d~~~l~~~~  167 (409)
T PLN00143        107 KHAAEIIIKVLA-----------RPEANILLPRPGFPDVETYAIFHHLEIR-H---FDLLPEKGWE----VDLDAVEAIA  167 (409)
T ss_pred             HHHHHHHHHHHc-----------CCCCEEEEcCCCCcCHHHHHHHcCCEEE-E---EeccCCCCCc----CCHHHHHHhc
Confidence            999999999665           2689999999999887644433221111 0   1111  1111    2789999988


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccC---CCcceeeeccccc
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYG---IFPDIMTLAKPLA  318 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~---~~pdi~t~sK~lg  318 (451)
                      +.+..++++++|.| ++| .+++.+.+++|.++|++|+++||+||+|.+|...+..+ ....+.   ...-+.+|||.++
T Consensus       168 ~~~~~~~~~~nP~N-PTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~  245 (409)
T PLN00143        168 DENTIAMVIINPGN-PCG-SVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWM  245 (409)
T ss_pred             ccCCEEEEEECCCC-CCC-CccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcC
Confidence            76567778888854 444 46799999999999999999999999999875444321 111121   1222347999976


Q ss_pred             -CCcccccccc--cHHHH------hhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCC
Q 013008          319 -GGLPIGAALV--TEKVA------SAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARN  375 (451)
Q Consensus       319 -~G~~iG~v~~--~~~i~------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~  375 (451)
                       +|+|+||+++  ++.+.      +.+........+ .+.++++++.++|+.. ..+++++              .++.+
T Consensus       246 ~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~  323 (409)
T PLN00143        246 IPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKT-TEDFFSKTINILRAALAFCYDKLKEI  323 (409)
T ss_pred             CCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             6999999998  33332      222211112223 4678888888777521 1223222              22334


Q ss_pred             CCcce--ecccceeEEEEecC-------ChHHHHHHH-HHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          376 PHVKD--VRGLGLIIGIEFDV-------SATPVVDAC-RDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       376 ~~~~~--v~g~G~~~~~~~~~-------~~~~~~~~l-~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      +....  .+..|+++|+.+..       ...+++..+ .++||.+.|+..   .+++|+++.  .+++++++++++|.++
T Consensus       324 ~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~--~~~~~l~~al~rl~~~  401 (409)
T PLN00143        324 PCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFA--VEQSSLEDGLGRLKSF  401 (409)
T ss_pred             CCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEc--CCHHHHHHHHHHHHHH
Confidence            32211  22347888888741       355666555 678999998742   467888654  5799999999999999


Q ss_pred             HHHHhhcC
Q 013008          443 LPVLDSNS  450 (451)
Q Consensus       443 l~~~~~~~  450 (451)
                      +++....|
T Consensus       402 l~~~~~~~  409 (409)
T PLN00143        402 CGRHAKKP  409 (409)
T ss_pred             HHHhccCC
Confidence            98765443

>PRK09148 aminotransferase; Validated

Probab=99.93  E-value=7.7e-24  Score=213.32  Aligned_cols=322  Identities=14%  Similarity=0.109  Sum_probs=207.7

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA  167 (451)
                      .|+.+|||..|..  .++ .++.+.+++.+.++... ..+  ..+..+.+..+++.+.+.++    .+ +|++|+|+++|
T Consensus        28 ~~~~~i~l~~~~p--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a  104 (405)
T PRK09148         28 AGADIIDLGMGNP--DLP-TPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG  104 (405)
T ss_pred             cCCCeEEcCCCCC--CCC-CCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence            4677899987754  344 36788888887764311 111  11222346666666655434    45 79999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC---C
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ---P  244 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~  244 (451)
                      +..++++..           +++|.|++.+|+|.++.......+. ....   .+...+..     +++.++++++   +
T Consensus       105 l~~~~~~l~-----------~~gd~Vl~~~P~y~~~~~~~~~~g~-~v~~---v~~~~~~~-----~~~~l~~~~~~~~~  164 (405)
T PRK09148        105 FANMAQAIT-----------APGDVILCPNPSYPIHAFGFIMAGG-VIRS---VPAEPDEE-----FFPALERAVRHSIP  164 (405)
T ss_pred             HHHHHHHhc-----------CCCCEEEEcCCCCcccHHHHHhcCC-EEEE---EeCCCCCC-----CccCHHHHHhhccc
Confidence            999988665           2689999999999987644433221 1100   11111111     2233444443   3


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc----CCCcceeeeccccc-
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY----GIFPDIMTLAKPLA-  318 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~----~~~pdi~t~sK~lg-  318 (451)
                      +...++++.|.| ++| ..++.+.+++|.++|++||+++|+||+|..|...+... .....    +....+.+|||.++ 
T Consensus       165 ~~~~v~l~~P~N-PtG-~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~  242 (405)
T PRK09148        165 KPIALIVNYPSN-PTA-YVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSM  242 (405)
T ss_pred             cceEEEEeCCCC-CCC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCC
Confidence            233444444544 445 46799999999999999999999999998764333211 11111    12223458999998 


Q ss_pred             CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCccee-cc
Q 013008          319 GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDV-RG  383 (451)
Q Consensus       319 ~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v-~g  383 (451)
                      .|+|+||+++++++++.+.......+++.+++++.++.++|+.  .+.+.++              .++++. +... ..
T Consensus       243 pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~p~  319 (405)
T PRK09148        243 AGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDVLVESFGRAG-WDIPPPA  319 (405)
T ss_pred             cchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCCC
Confidence            7999999999999998886443334566778888888888862  2233322              222332 2222 34


Q ss_pred             cceeEEEEecC-----ChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          384 LGLIIGIEFDV-----SATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       384 ~G~~~~~~~~~-----~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .|+++|+.+..     ...++++.|+ ++||.+.|+..     .+++||+..  .+.+++++++++|.+++++..
T Consensus       320 ~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~  392 (405)
T PRK09148        320 ASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSSAD  392 (405)
T ss_pred             eeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHH
Confidence            57788888732     2467888877 68999998631     367898654  689999999999999987654

>PLN02187 rooty/superroot1

Probab=99.93  E-value=6.5e-24  Score=216.48  Aligned_cols=328  Identities=15%  Similarity=0.137  Sum_probs=208.7

Q ss_pred             CCCEEEeeccCcccccCC--CCCHHHHHHHHHHHhhcccccCCCCC----HHHHHHHHHHhhcc----CCCeEEecCCHH
Q 013008           96 EGREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLTHVSNMYYS----IPQIELAKRLVACS----FADRVFFSNTGT  165 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~----~~e~v~~~~sG~  165 (451)
                      +++.+|++..|.... +.  -.++++.+++.+.++.... ..+.+.    ..+..+++++.+.+    ..++|++|+|++
T Consensus        64 ~~~~vi~l~~Gdp~~-~p~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~  141 (462)
T PLN02187         64 VNKTILPLGHGDPSV-YPCFRTCIEAEDAVVDVLRSGKG-NSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCN  141 (462)
T ss_pred             CCCCeEECCCCCCCC-CCCCCCCHHHHHHHHHHHhCCCC-CCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHH
Confidence            467899988875421 11  1457888999988765321 111122    23455555554433    278999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  245 (451)
                      +|+..+++++.           +++|.|++.+|+|.++...+...+. ....   .+..+.-.+  --|+++|++++.+.
T Consensus       142 ~al~~~~~~l~-----------~pGd~Vlv~~P~y~~y~~~~~~~g~-~~~~---~~l~~~~~~--~~d~~~l~~~~~~~  204 (462)
T PLN02187        142 QGIEIVFESLA-----------RPNANILLPRPGFPHYDARAAYSGL-EVRK---FDLLPEKEW--EIDLEGIEAIADEN  204 (462)
T ss_pred             HHHHHHHHHhc-----------CCCCEEEEeCCCCccHHHHHHHcCC-EEEE---EeCccccCC--ccCHHHHHHhcCCC
Confidence            99999999665           2689999999999987544332221 1111   011110000  02789999988765


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc-CC--Ccceeeeccccc-CC
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-GI--FPDIMTLAKPLA-GG  320 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~-~~--~pdi~t~sK~lg-~G  320 (451)
                      ..+++++.|.|++ | .+++.+.+++|.++|++||++||+||+|..|-+.+..+ ....+ +.  ..-+.+|||.++ +|
T Consensus       205 ~~~v~i~nP~NPT-G-~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pG  282 (462)
T PLN02187        205 TVAMVVINPNNPC-G-NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPG  282 (462)
T ss_pred             cEEEEEeCCCCCC-C-CccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCcc
Confidence            6677888886544 4 46799999999999999999999999998864444321 11112 11  122347899977 69


Q ss_pred             ccccccccc--HHH---HhhccCCCccCCC--CCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc
Q 013008          321 LPIGAALVT--EKV---ASAINYGDHGSTF--AGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK  379 (451)
Q Consensus       321 ~~iG~v~~~--~~i---~~~~~~~~~~~t~--~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~  379 (451)
                      +|+||++++  +.+   ++.+........+  +.+.+.++++.++|+. ..++++++              .++.++...
T Consensus       283 lRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~-~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~  361 (462)
T PLN02187        283 WKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEK-ADKNFFAKKNKILKHNVDLVCDRLKDIPCVV  361 (462)
T ss_pred             ceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence            999999973  322   2333222112222  4478899999888863 12333332              334455332


Q ss_pred             e--ecccceeEEEEecC-------ChHHHHHHH-HHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          380 D--VRGLGLIIGIEFDV-------SATPVVDAC-RDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       380 ~--v~g~G~~~~~~~~~-------~~~~~~~~l-~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .  .+..|+++++.++.       +..+++..+ .++||.+.|+.   ..+++||++  ..+++.+++++++|.+++++.
T Consensus       362 ~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~--~~~~e~l~~al~rL~~~l~~~  439 (462)
T PLN02187        362 CPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITI--GVEAHMLEDALERLKGFCTRH  439 (462)
T ss_pred             CCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHh
Confidence            1  23346888886631       344565554 68899999874   246788854  557999999999999999765


Q ss_pred             h
Q 013008          447 D  447 (451)
Q Consensus       447 ~  447 (451)
                      .
T Consensus       440 ~  440 (462)
T PLN02187        440 A  440 (462)
T ss_pred             h
Confidence            4

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.93  E-value=7.2e-24  Score=215.50  Aligned_cols=326  Identities=18%  Similarity=0.156  Sum_probs=233.9

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc------cCCCCCHHHHHHHHHHhhccC----CCeEEecCCHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV------SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGT  165 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~  165 (451)
                      +....+||..++....+ .....+.+++.+.++.....      ...+..+.+..+++++....+    .++|++|+|..
T Consensus        87 ~~~~~i~f~~g~p~~~~-fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q  165 (459)
T COG1167          87 DDPSVIDFAGGLPDPSL-FPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQ  165 (459)
T ss_pred             CCCceecCCCCCCCccc-CCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHH
Confidence            44788999888753322 24456666666665432211      112223336666666663333    67999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC----CHHHHHHh
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG----NIEATRKL  241 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~  241 (451)
                      +|+..++++..           +++|.|++-+|+|++........+             ..+..+|.+    |+++|++.
T Consensus       166 ~al~l~~~~l~-----------~pGd~v~vE~PtY~~~~~~~~~~g-------------~~~~~vp~d~~G~~~e~le~~  221 (459)
T COG1167         166 QALDLLLRLLL-----------DPGDTVLVEDPTYPGALQALEALG-------------ARVIPVPVDEDGIDPEALEEA  221 (459)
T ss_pred             HHHHHHHHHhC-----------CCCCEEEEcCCCcHHHHHHHHHcC-------------CcEEecCCCCCCCCHHHHHHH
Confidence            99999998766           279999999999998764443322             112222222    79999999


Q ss_pred             cCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-c---ccccccCCCcceeeecccc
Q 013008          242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-L---WAHEHYGIFPDIMTLAKPL  317 (451)
Q Consensus       242 l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~---~~~~~~~~~pdi~t~sK~l  317 (451)
                      ++..+++++++.|.+.|+.+..++.+-.++|.++|++||+++|.||+|..|-+.+. .   .+.+..+.+..+.+|||.+
T Consensus       222 ~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l  301 (459)
T COG1167         222 LAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTL  301 (459)
T ss_pred             HhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhc
Confidence            98778999999997666655678999999999999999999999999988855543 2   2333445566788999999


Q ss_pred             cCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCCC-Cccee
Q 013008          318 AGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARNP-HVKDV  381 (451)
Q Consensus       318 g~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~~-~~~~v  381 (451)
                      +.|+|+||+++++++++.+....+..+.+.+.+.|.+...-+..-.-+.++++               +.+..+ .+...
T Consensus       302 ~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~  381 (459)
T COG1167         302 APGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWT  381 (459)
T ss_pred             ccccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeee
Confidence            99999999999999999987666777888888988777766651111222222               223334 23222


Q ss_pred             -cccceeEEEEec--CChHHHHHHHHHCCceeeecCC--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          382 -RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK--------GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       382 -~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~--------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                       +..|+++|+.+.  .+..++.+.++++|+.+.|.+.        .+.+|++++.. ++|++++++++|.+++.+..
T Consensus       382 ~p~gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~-~~e~i~~gi~~l~~~~~~~~  457 (459)
T COG1167         382 RPEGGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRLAALLREAA  457 (459)
T ss_pred             cCCceEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHh
Confidence             334899999995  3678899999999999988321        24799987755 68999999999999998754

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.93  E-value=9.4e-24  Score=213.81  Aligned_cols=329  Identities=14%  Similarity=0.122  Sum_probs=210.8

Q ss_pred             CCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhccc-ccC--CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTH-VSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~-~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      |+.+|++..|.....-.. .+|++.+++.++++.... .+.  .+..+.+..+++++...++    .++|++|+|+++|+
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al  130 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI  130 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence            788999988865331112 468899999988875321 111  1222335556666654433    57899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++.+.           +++|.|++.+|+|+.+.......+.....    .+..+...+.  -|+++|++++.++..+
T Consensus       131 ~l~~~~l~-----------~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~----~~~~~~~~~~--~d~~~l~~~~~~~~~~  193 (430)
T PLN00145        131 EIIMSVLA-----------QPGANILLPRPGYPLYEARAVFSGLEVRH----FDLLPERGWE--VDLEGVEALADENTVA  193 (430)
T ss_pred             HHHHHHhc-----------CCCCEEEEcCCCCccHHHHHHHcCCEEEE----eeCCcccCCc--CCHHHHHHHhCcCceE
Confidence            99999664           26899999999998875443332221111    0111110000  2889999988766677


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccC---CCcceeeeccccc-CCccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYG---IFPDIMTLAKPLA-GGLPI  323 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~---~~pdi~t~sK~lg-~G~~i  323 (451)
                      ++++.|.| ++| .+.+.+.+++|.++|++||+++|+||+|..|.+.+..+ ....++   ...-+.+|||.++ .|||+
T Consensus       194 i~i~~P~N-PtG-~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~Rl  271 (430)
T PLN00145        194 MVIINPNN-PCG-SVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRL  271 (430)
T ss_pred             EEEeCCCC-CCC-CCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeE
Confidence            77777754 444 46799999999999999999999999998874433211 111111   1222347899976 69999


Q ss_pred             ccccc--cHHHHh------hccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcce-
Q 013008          324 GAALV--TEKVAS------AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKD-  380 (451)
Q Consensus       324 G~v~~--~~~i~~------~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~-  380 (451)
                      ||+++  ++.+++      .+... ...+.+.+.+.|+|+..+|+.- .+++.++              .++.++.+.. 
T Consensus       272 G~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~  349 (430)
T PLN00145        272 GWIATCDPNGILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIANT-KEEFFTKTLGLLKETADICYEKIKEIKCITCP  349 (430)
T ss_pred             EEEEEecchhhhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            99986  444433      22211 1122345678888888887631 1233322              2344554432 


Q ss_pred             -ecccceeEEEEecC-------ChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          381 -VRGLGLIIGIEFDV-------SATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       381 -v~g~G~~~~~~~~~-------~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                       .+..|+++++.++.       +..+++..|+ ++||++.|+.   ..+++||+..  .+.+++++++++|.+++.+.+.
T Consensus       350 ~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~~al~rl~~~~~~~~~  427 (430)
T PLN00145        350 HKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLEDGLERLKSFCLRHAK  427 (430)
T ss_pred             cCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhcc
Confidence             24456677776631       3456776666 5699999863   2478999655  5899999999999999987654

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.93  E-value=4.6e-24  Score=214.75  Aligned_cols=326  Identities=16%  Similarity=0.114  Sum_probs=209.8

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccC-CCCCHHHHHHHHHHhhccC-----CC-eEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSN-MYYSIPQIELAKRLVACSF-----AD-RVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-~~~~~~~~~l~~~l~~~~~-----~e-~v~~~~sG~eA  167 (451)
                      .|++++|+.+|..  .++ .+|.+.+++.+.+.... ..+. .+....+..+++++.+.++     .+ +|++|+|+++|
T Consensus        42 ~~~~~i~L~~g~p--~~~-~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a  118 (410)
T PRK06290         42 PDMELIDMGVGEP--DEM-ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA  118 (410)
T ss_pred             CCCCeEEcCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence            4677899998875  454 56778888887664321 1111 1222335666666655433     34 79999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCe
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT  247 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  247 (451)
                      +..++++..           ++++.|++.+|+|.++...+...+. ....   .+...+..+.  .|++++++.+.+ ++
T Consensus       119 l~~~~~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~-~v~~---v~~~~~~~~~--~d~~~l~~~~~~-~~  180 (410)
T PRK06290        119 LAMLPSCFI-----------NPGDVTLMTVPGYPVTGTHTKYYGG-EVYN---LPLLEENNFL--PDLDSIPKDIKE-KA  180 (410)
T ss_pred             HHHHHHHhC-----------CCCCEEEEeCCCCccHHHHHHHcCC-EEEE---EecCCCcCCc--CCHHHHHHhhcc-cc
Confidence            999888654           2689999999999887554433222 1111   1111111111  278899888864 45


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc-cc---cCCCcceeeeccccc-CCcc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EH---YGIFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~---~~~~pdi~t~sK~lg-~G~~  322 (451)
                      ++|++...++++| .+++.+.+++|.++|++||++||+||+|..+...+....+ ..   .+...-+.+|||.++ .|+|
T Consensus       181 k~i~l~nP~NPTG-~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlR  259 (410)
T PRK06290        181 KLLYLNYPNNPTG-AVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWR  259 (410)
T ss_pred             eEEEEECCCCCCC-cCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhh
Confidence            5666553344445 4679999999999999999999999999876433321111 11   122233458999997 6999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-cee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~  387 (451)
                      +||+++++++++.+.........+.+.+++.++.++|+.   .++.++              .++.++ +...++. |++
T Consensus       260 iG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~g~f~  335 (410)
T PRK06290        260 LAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDH---PEITEKIREKYSRRLDKLVKILNEVG-FKAEMPGGTFY  335 (410)
T ss_pred             eEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhC---cHHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCCeeeE
Confidence            999999999998876433333444556788888777752   222222              223332 2223333 566


Q ss_pred             EEEEec---------CChHHHHHHHHHCCc-eeeecCC-CCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHh
Q 013008          388 IGIEFD---------VSATPVVDACRDSGL-LVLTAGK-GNVVRLVPP-LIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       388 ~~~~~~---------~~~~~~~~~l~~~Gv-~~~~~~~-~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +|+.+.         .+..++++.|+++|+ .+.|+.. ++++||+++ ...++|+.++++++|++.|.++.
T Consensus       336 l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~  407 (410)
T PRK06290        336 LYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDVE  407 (410)
T ss_pred             EEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence            677773         146789999998865 4445432 467898654 24588999999999999887653

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.93  E-value=4.9e-24  Score=211.80  Aligned_cols=308  Identities=17%  Similarity=0.178  Sum_probs=205.9

Q ss_pred             cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEe-cCCHHHHHHHH
Q 013008           95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFF-SNTGTEANEAA  171 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~-~~sG~eA~~~a  171 (451)
                      .+++++|||.+|..  .+| .+|.+.+++.+.+.....    ++.....++.+.++++++  .+++++ ++|.++++..+
T Consensus        31 ~~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~----y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~  103 (361)
T PRK00950         31 IDPESIIKLGSNEN--PLG-PSPKAVEAIEKELSKIHR----YPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTL  103 (361)
T ss_pred             CCccceEEccCCCC--CCC-CCHHHHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHH
Confidence            35679999998854  466 678899998887765321    222234778888888887  568888 67778888888


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF  251 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi  251 (451)
                      ++++.           ++++.|++.+|+|..+....... |.....   .+...+.    ..|++++++.+.+ ++++++
T Consensus       104 ~~~~~-----------~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~---~~~~~~~----~~~~~~l~~~~~~-~~~~v~  163 (361)
T PRK00950        104 MRTFI-----------DPGDEVIIPTPTFSYYEISAKAH-GAKPVY---AKREEDF----SLDVDSVLNAITE-KTKVIF  163 (361)
T ss_pred             HHHhc-----------CCCCEEEEcCCChHHHHHHHHHc-CCEEEE---eecCCCC----CcCHHHHHHHhcc-CCCEEE
Confidence            87653           15789999999997664433222 211110   0111110    1278999988864 444555


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCCCcceeeeccccc-CCccccccccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVT  329 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~  329 (451)
                      ++.+++++|.+.+    .+++.++|+++|+++|+||+|.+|. .+.... ....+....+.+|||.+| .|+|+||++++
T Consensus       164 ~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~  238 (361)
T PRK00950        164 LCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVP  238 (361)
T ss_pred             EeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCC
Confidence            4444566676666    6678888999999999999998773 221111 111121223458999998 69999999999


Q ss_pred             HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCCCCcceecccceeEEEEec-CChH
Q 013008          330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARNPHVKDVRGLGLIIGIEFD-VSAT  397 (451)
Q Consensus       330 ~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~~~~~~v~g~G~~~~~~~~-~~~~  397 (451)
                      +++++.+...  ...++.++++++++.++++   ..+++++           +.+.+. +...+..|.++++.++ .+..
T Consensus       239 ~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~-~~~~~~~~~~i~~~~~~~~~~  312 (361)
T PRK00950        239 EWLIDYYMRA--KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP-FKVYPSEANFVLVDVTPMTAK  312 (361)
T ss_pred             HHHHHHHHHh--cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC-eeECCCcceEEEEECCCCCHH
Confidence            9998877643  2345577888888887775   3333322           223332 2223456778888773 3578


Q ss_pred             HHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          398 PVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       398 ~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ++++.|.++||.+.++..     .+.+|+++.   +.+++++++++|++++
T Consensus       313 ~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il  360 (361)
T PRK00950        313 EFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV  360 (361)
T ss_pred             HHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence            899999999999987521     257898754   7889999999998875

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.93  E-value=8.9e-24  Score=212.79  Aligned_cols=325  Identities=17%  Similarity=0.085  Sum_probs=214.2

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~  170 (451)
                      |.+++|+..|...  ++ .+|.+.+++.+.+++....+  ..+..+.+.++++++.+.++    .++|++|+|+++|+..
T Consensus        32 ~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~  108 (402)
T PRK06107         32 GRSIVDLTVGEPD--FD-TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL  108 (402)
T ss_pred             cCCEEEcCCCCCC--CC-CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence            4567888887653  33 47889999998886432211  11223446778888876654    6789999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++...           .+++.|++.+|+|.++........+... .   .+...+..+ . -|++++++.+.++..+++
T Consensus       109 ~~~~~~-----------~~gd~vl~~~p~y~~y~~~~~~~~~~~~-~---v~~~~~~~~-~-~~~~~l~~~~~~~~~~v~  171 (402)
T PRK06107        109 ALMATL-----------EAGDEVIIPAPYWVSYPDMVLANDGTPV-I---VACPEEQGF-K-LTPEALEAAITPRTRWLI  171 (402)
T ss_pred             HHHHhc-----------CCCCEEEEecCCCcCHHHHHHHcCCEEE-E---ecCCcccCC-C-CCHHHHHhhcCcCceEEE
Confidence            987543           1689999999998877544332222111 1   111100000 0 267899998875444455


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHh-CCEEEEeccccCCCcccccc-cccc--cCCCcc---eeeeccccc-CCcc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDA-GALLVFDEVQCGLGRTGYLW-AHEH--YGIFPD---IMTLAKPLA-GGLP  322 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~~-~~~~--~~~~pd---i~t~sK~lg-~G~~  322 (451)
                      ++.|. +++| ..++.+.+++|+++|++| ++++|+||+|..+...+..+ ....  .+....   +.+|||.++ .|+|
T Consensus       172 l~~p~-NPtG-~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR  249 (402)
T PRK06107        172 LNAPS-NPTG-AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWR  249 (402)
T ss_pred             EECCC-CCCC-cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccc
Confidence            55564 4445 467999999999999998 99999999998764444211 1111  111122   336799998 7999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-ccee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~  387 (451)
                      +||+++++++++.+.......+++.+.++++++..+|+.  .+.++++              .+++++.+....+ .|++
T Consensus       250 iG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~  327 (402)
T PRK06107        250 IGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFY  327 (402)
T ss_pred             eeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceE
Confidence            999999999999886544445667888999999888852  2223222              2334443333333 4666


Q ss_pred             EEEEec-------------CChHHHHHHHH-HCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          388 IGIEFD-------------VSATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       388 ~~~~~~-------------~~~~~~~~~l~-~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +|+.+.             .+..+++..|+ ++||.+.|+..   .+++|++..  .++|++++++++|.+++++++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~~  402 (402)
T PRK06107        328 LYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEEACARIERAVAALR  402 (402)
T ss_pred             EeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHhcC
Confidence            777652             13456776665 67999998732   367888655  589999999999999987753

>PRK08068 transaminase; Reviewed

Probab=99.93  E-value=6e-24  Score=213.24  Aligned_cols=318  Identities=16%  Similarity=0.111  Sum_probs=202.0

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc-cc--CCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~--~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~  168 (451)
                      |..+|||..+..   -...+|.+.+++.+.+..... .+  ..+....+.++++++.+.++    .+ +|++|+|+++++
T Consensus        31 ~~~~i~l~~~~p---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l  107 (389)
T PRK08068         31 GHDVINLGQGNP---DQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGL  107 (389)
T ss_pred             CCCeEEecCCCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHH
Confidence            456789888754   234678899999988764211 11  12223335566666554434    45 799999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..++++..           .+++.|++.+|+|..+...+...+. ....   .+..++..+.  .|++++++.+......
T Consensus       108 ~~~~~~~~-----------~~gd~vlv~~P~y~~~~~~~~~~g~-~~~~---i~~~~~~~~~--~d~~~l~~~~~~~~~~  170 (389)
T PRK08068        108 VELPQCLM-----------NPGDTILVPDPGYPDYLSGVALARA-QFET---MPLIAENNFL--PDYTKIPEEVAEKAKL  170 (389)
T ss_pred             HHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHhcCC-EEEE---eecccccCCC--CCHHHHHHhccccceE
Confidence            98877554           1688999999999877654433222 1111   1211111010  2788998888643334


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccc-ccccC---CCcceeeeccccc-CCcc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWA-HEHYG---IFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~-~~~~~---~~pdi~t~sK~lg-~G~~  322 (451)
                      +++++|. +++| ..++.+.+++|.++|++||+++|+||+|..|...+. ... ....+   ....+.+|||.+| .|+|
T Consensus       171 v~l~~P~-NPTG-~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlR  248 (389)
T PRK08068        171 MYLNYPN-NPTG-AVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWR  248 (389)
T ss_pred             EEEECCC-CCCC-CcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccce
Confidence            4444464 4445 467999999999999999999999999987755442 111 11122   2233458999997 7999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccc-ee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLG-LI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G-~~  387 (451)
                      +||+++++++++.+.........+.+++.+.++.+++.  ....++++              .++.+. +...++.| ++
T Consensus       249 iG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~~~~~L~~~g-~~~~~~~g~~~  325 (389)
T PRK08068        249 VAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALL--SDQSCVAELVARYESRRNAFISACREIG-WEVDAPKGSFF  325 (389)
T ss_pred             eEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCeeEE
Confidence            99999999999887643322334445556666666664  22232222              223332 22234444 56


Q ss_pred             EEEEec--CChHHHHHHHHH-CCceeeecC---C--CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          388 IGIEFD--VSATPVVDACRD-SGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       388 ~~~~~~--~~~~~~~~~l~~-~Gv~~~~~~---~--~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      +|+.+.  .+..++++.|++ +||.+.|+.   .  .+++||+..  .+++.+.+++++|.+
T Consensus       326 ~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~  385 (389)
T PRK08068        326 AWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL--TDEERLREAVERIGK  385 (389)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence            788874  357789999986 699998852   1  257888664  577888888888875

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=5.4e-24  Score=211.11  Aligned_cols=311  Identities=21%  Similarity=0.257  Sum_probs=208.2

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~  173 (451)
                      +|.+++||..|..  .++ .+|.+.+++.+.++....    |+.....+|.+.++++++  .++|++|+|+++|+..+++
T Consensus        28 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~----Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~  100 (357)
T PRK14809         28 DPDDLVKLSSNEN--PHG-PSPAAVEAIREAAERVHS----YPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLAR  100 (357)
T ss_pred             CccceeEecCCCC--CCC-CCHHHHHHHHHHHhhhhc----CCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            4567999988755  454 578889999887764221    222235577788888776  7899999999999999988


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                      ++.           ++++.|++.+|+|..+.......+. ....   .++.....+ . .|.+++++...  ++++|++.
T Consensus       101 ~~~-----------~~gd~V~v~~P~y~~~~~~~~~~g~-~~~~---~~l~~~~~~-~-~~~~~~~~~~~--~~k~i~l~  161 (357)
T PRK14809        101 AML-----------DPGDTVLVPDPGFAYYGMSARYHHG-EVRE---YPVSKADDF-E-QTADTVLDAYD--GERIVYLT  161 (357)
T ss_pred             Hhc-----------CCCCEEEEeCCChHHHHHHHHHcCC-eEEE---EecccCcCC-C-cCHHHHHHhhc--CCcEEEEe
Confidence            654           2689999999998755433222211 1100   011110000 0 25677766553  23444444


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccCCCcceeeeccccc-CCcccccccccHH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      +.++++|. +++.+.+++|+++|++ +++||+||+|..|...+... ..+..+....+.+|||.++ .|+|+||++++++
T Consensus       162 ~p~NPTG~-~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~  239 (357)
T PRK14809        162 SPHNPTGS-EIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEE  239 (357)
T ss_pred             CCCCCCCc-CCCHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHH
Confidence            44555554 5688889999999875 78999999998885433211 1122222344558999998 7999999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCCCCcceecccceeEEEEecCChHHHH
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARNPHVKDVRGLGLIIGIEFDVSATPVV  400 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~  400 (451)
                      +++.+...  ..+++.+++++.++.++|+   +++++++           +.+.+... ..+..|+++|+.+. +..+++
T Consensus       240 ~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~g~f~~~~~~-~~~~~~  312 (357)
T PRK14809        240 WADAYARV--NTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIREELDAP-TWESAGNFVLAEVG-DASAVA  312 (357)
T ss_pred             HHHHHHHh--CCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCc-cCCCCCCEEEEECC-CHHHHH
Confidence            99888643  2467778888888888774   3444433           11222111 23567889998874 467899


Q ss_pred             HHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          401 DACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       401 ~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.|.++||.+.++..   ++++|+++.   +++++++++++|.++++
T Consensus       313 ~~l~~~gv~v~~g~~f~~~~~iRls~~---~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        313 EAAQERGVIVRDCTSFGLPECIRITCG---TREETERAVEVLNEVLA  356 (357)
T ss_pred             HHHHHCCEEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence            999999999998742   367898643   57899999999998764

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.93  E-value=9.8e-24  Score=211.24  Aligned_cols=318  Identities=16%  Similarity=0.146  Sum_probs=206.3

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhccc-cc-CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VS-NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAI  172 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al  172 (451)
                      .++||..|..  .++ .+|++.+++.+.+..... +. ..+....+..+++++.+..+    .+++++|+|+++|+..++
T Consensus        30 ~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~  106 (384)
T PRK06348         30 DIIDLSLGDP--DLI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLAL  106 (384)
T ss_pred             CcEEcCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHH
Confidence            4688887765  243 467777766554432111 11 11122335666666655432    789999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV  252 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~  252 (451)
                      +++.           ++++.|++.+|+|.++.......+.... .   .+..++..+  .-|+++|++.++++ +++|++
T Consensus       107 ~~~~-----------~~gd~vlv~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~~--~~d~~~l~~~~~~~-~~~v~l  168 (384)
T PRK06348        107 QSIL-----------DPGDEVIIHEPYFTPYKDQIEMVGGKPI-I---LETYEEDGF--QINVKKLEALITSK-TKAIIL  168 (384)
T ss_pred             HHhc-----------CCCCEEEEeCCCCcchHHHHHHcCCEEE-E---ecCCcCcCC--cCCHHHHHHhhCcC-ccEEEE
Confidence            9765           2688999999999887655544332111 1   011000000  02789999988653 444444


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc-CC---Ccceeeeccccc-CCccccccc
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY-GI---FPDIMTLAKPLA-GGLPIGAAL  327 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~---~pdi~t~sK~lg-~G~~iG~v~  327 (451)
                      ...++++| .+++.+.+++|.++|++||++||+||+|.+|...+.......+ +.   ..-+.+|||.++ .|+|+||++
T Consensus       169 ~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v  247 (384)
T PRK06348        169 NSPNNPTG-AVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVI  247 (384)
T ss_pred             eCCCCCCC-cCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeee
Confidence            43344445 4679999999999999999999999999887433321111111 11   222448999999 799999999


Q ss_pred             ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cceeEEEEe
Q 013008          328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLIIGIEF  392 (451)
Q Consensus       328 ~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~~~~~~  392 (451)
                      +++++++.+.......+++.+++++.++..+|+.  .+.+.++              .++.++.+....+ .|+++|+.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~  325 (384)
T PRK06348        248 APDYIIETAKIINEGICFSAPTISQRAAIYALKH--RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINI  325 (384)
T ss_pred             cCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEec
Confidence            9999988876444445677899999999888863  2222221              2233343332334 366778877


Q ss_pred             c---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          393 D---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       393 ~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      .   .+..++++.|+ +.||.+.|+..     .+.+|++.  ..+++++++++++|.+.
T Consensus       326 ~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        326 KKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             ccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHHHhh
Confidence            4   35678898887 46999987632     25788875  46899999999998753

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.93  E-value=1.1e-23  Score=209.73  Aligned_cols=310  Identities=22%  Similarity=0.271  Sum_probs=210.9

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~  173 (451)
                      ++++++||.++..  .+| .+|.+.+++.+.+.....    ++.....+|.+.++++++  .++|++++|+++++..+++
T Consensus        30 ~~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~----y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~  102 (367)
T PRK02731         30 GIADIIKLASNEN--PLG-PSPKAIEAIRAAADELHR----YPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLAR  102 (367)
T ss_pred             CCCceEEecCCCC--CCC-CCHHHHHHHHHHHHhhcC----CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            5778999999854  466 578899999988765322    222224578888888876  5789999999999888777


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                      .+.           ++++.|++.+|+|+.+....... +.....   .+. .+.    ..|++++++.+++ ++++|+++
T Consensus       103 ~l~-----------~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~---~~~-~~~----~~~~~~l~~~~~~-~~~~v~l~  161 (367)
T PRK02731        103 AYL-----------GPGDEVIYSEHGFAVYPIAAQAV-GAKPVE---VPA-KDY----GHDLDAMLAAVTP-RTRLVFIA  161 (367)
T ss_pred             Hhc-----------CCCCEEEEecCCHHHHHHHHHHc-CCeEEE---ecc-cCC----CCCHHHHHHHhCC-CCcEEEEe
Confidence            553           15889999999997665433222 211111   011 000    1278999998864 45666665


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cccccccCCCccee---eeccccc-CCcccccccc
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPDIM---TLAKPLA-GGLPIGAALV  328 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~  328 (451)
                      .+++++|. ..+.+.++++.+.|+ +|+++|+||+|..+.+.+. .......+..++++   +|||.+| +|+|+||+++
T Consensus       162 ~p~nptG~-~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~  239 (367)
T PRK02731        162 NPNNPTGT-YLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIA  239 (367)
T ss_pred             CCCCCCCc-CCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeC
Confidence            55566665 456666777776664 5999999999987644332 11222222234444   8999997 6899999999


Q ss_pred             cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec-
Q 013008          329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD-  393 (451)
Q Consensus       329 ~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~-  393 (451)
                      ++++++.+....  .+++.+++++.++.++|+   ..++.++              .+++++ +...++.|.++++.+. 
T Consensus       240 ~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~g~~~~i~~~~  313 (367)
T PRK02731        240 PPEIIDALNRVR--QPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAELG-LEYIPSVGNFILVDFDD  313 (367)
T ss_pred             CHHHHHHHHHcc--CCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHCC-CccCCCCceEEEEECCC
Confidence            999998886432  356678888888887775   2333222              223332 2234456889999883 


Q ss_pred             -CChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          394 -VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       394 -~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                       .++.++++.|.++||.+.++..   .+.+|++++   +.++++++++.|+++++
T Consensus       314 ~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        314 GKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFLA  365 (367)
T ss_pred             CCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence             4678899999999999998642   257899754   78899999999998774

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.3e-23  Score=211.12  Aligned_cols=324  Identities=16%  Similarity=0.119  Sum_probs=209.1

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~  170 (451)
                      +..++||..+...  ++ .+|++.+++.+.+......+..  +....+..+++++.+.++    .+++++++|+++|+..
T Consensus        30 ~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~  106 (393)
T PRK05764         30 GRDVISLGAGEPD--FD-TPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYN  106 (393)
T ss_pred             cCCEEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHH
Confidence            4467888888763  32 5789999998887643221111  112224555555544333    5789999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++.+..           +++.|++.+|+|.++...+... |.....   .+..++..+  .-|++.+++.+++....++
T Consensus       107 ~~~~~~~-----------~gd~vl~~~p~y~~~~~~~~~~-g~~~~~---~~~~~~~~~--~~d~~~l~~~l~~~~~~v~  169 (393)
T PRK05764        107 AFMALLD-----------PGDEVIIPAPYWVSYPEMVKLA-GGVPVF---VPTGEENGF--KLTVEQLEAAITPKTKALI  169 (393)
T ss_pred             HHHHhcC-----------CCCEEEecCCCCcchHHHHHHc-CCEEEE---EecCcccCC--cCCHHHHHHhhCccceEEE
Confidence            8886541           5889999999998765443322 211111   011110000  0268999998865333444


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-ccccc-----cCCCcceeeeccccc-CCccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH-----YGIFPDIMTLAKPLA-GGLPI  323 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~-----~~~~pdi~t~sK~lg-~G~~i  323 (451)
                      ++.| ++++|. +++.+.+++|.++|++||+++|+||+|..+...+.. .....     .+....+.+|||.++ .|+|+
T Consensus       170 ~~~p-~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri  247 (393)
T PRK05764        170 LNSP-SNPTGA-VYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRL  247 (393)
T ss_pred             EECC-CCCCCc-ccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCcccee
Confidence            4545 444554 578889999999999999999999999876433321 11111     112223347999998 79999


Q ss_pred             ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccc-eeE
Q 013008          324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLG-LII  388 (451)
Q Consensus       324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G-~~~  388 (451)
                      ||+++++++++.+.......+.+.+++++.++.++|+.  .+++.++              .++.++.+...++.| .++
T Consensus       248 G~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~  325 (393)
T PRK05764        248 GYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYV  325 (393)
T ss_pred             EEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEE
Confidence            99999999998876443334556788888888888752  1222211              334454343344544 566


Q ss_pred             EEEecC-------ChHHHHHHHHH-CCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          389 GIEFDV-------SATPVVDACRD-SGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       389 ~~~~~~-------~~~~~~~~l~~-~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |+.+..       ...++.+.|++ +||.+.++..   .+++|++  +.++++++++++++|.+++++.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        326 FPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLERIERFLESL  392 (393)
T ss_pred             EEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHhh
Confidence            776632       13778888764 7999988642   3678885  5568999999999999998764

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.93  E-value=9e-24  Score=219.02  Aligned_cols=328  Identities=16%  Similarity=0.164  Sum_probs=209.4

Q ss_pred             cCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhcc--C--CCeEEecCCHHHHH
Q 013008           95 AEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACS--F--ADRVFFSNTGTEAN  168 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~--~e~v~~~~sG~eA~  168 (451)
                      ..|+.+|+|..|... ++|. .++++.+++.+++.....++ ..+..+.++++++++.+..  +  .++|++++|+++|+
T Consensus       143 ~~g~~~i~l~~G~p~-~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal  221 (517)
T PRK13355        143 AAGTHILKLNIGNPA-PFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI  221 (517)
T ss_pred             HcCCCeEEecCcCCC-cCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence            357889999987653 4565 47789999888776432211 1112223555555554432  2  67999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++++.           +++|.|++.+|+|..+...+...++.....    +..++..+.  .|++++++.+.++..+
T Consensus       222 ~~~~~~l~-----------~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~----~~~~~~~~~--~d~~~l~~~~~~~~k~  284 (517)
T PRK13355        222 NLSMSALL-----------DDGDEVLIPSPDYPLWTACVNLAGGTAVHY----RCDEQSEWY--PDIDDIRSKITSRTKA  284 (517)
T ss_pred             HHHHHHhC-----------CCCCEEEEcCCCCcCHHHHHHHCCCEEEEe----ecCcccCCC--CCHHHHHHhcCcCceE
Confidence            99998664           268999999999998875544333322111    111111111  2889999998764455


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccCCCcc-----eeeeccccc-CCc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPD-----IMTLAKPLA-GGL  321 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~~pd-----i~t~sK~lg-~G~  321 (451)
                      ++++.|.| ++|. +.+.+.+++|.++|++||++||+||+|..|-+.|..+ ....  ..++     +-+|||.++ .|+
T Consensus       285 i~i~nP~N-PTG~-v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~~~vi~~~S~SK~~~~~G~  360 (517)
T PRK13355        285 IVIINPNN-PTGA-LYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPDLFCVTFSGLSKSHMIAGY  360 (517)
T ss_pred             EEEECCCC-CCCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCCCeEEEEecchhhccCccc
Confidence            66777754 4454 5789999999999999999999999998875444311 1111  1233     236899987 599


Q ss_pred             ccccccc--cHHH----HhhccCCCccCCCCCcHHHHHHHHHHHHHhcC-hHHH-------HH------HHhCCCCccee
Q 013008          322 PIGAALV--TEKV----ASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFL-------AS------KLARNPHVKDV  381 (451)
Q Consensus       322 ~iG~v~~--~~~i----~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~-------~~------~~~~~~~~~~v  381 (451)
                      |+||+++  ++++    ++.+... ....++.|.+++.++.++|+.... .++.       ++      .++.++.+...
T Consensus       361 RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~  439 (517)
T PRK13355        361 RIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISAV  439 (517)
T ss_pred             ceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence            9999984  4443    3333211 122345678888888888852110 1111       11      33455555555


Q ss_pred             ccccee-EEEEecC------ChHHHHH-HHHHCCceeeecC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          382 RGLGLI-IGIEFDV------SATPVVD-ACRDSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       382 ~g~G~~-~~~~~~~------~~~~~~~-~l~~~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+.|.| +|+.++.      +...++. .|.++||.+.|+.     ..+++|++.  ..++++|++++++|.++++..+
T Consensus       440 ~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~l~~a~~rl~~~~~~~~  516 (517)
T PRK13355        440 KPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY--LPRLEDLEDAMDRLADFFSYYR  516 (517)
T ss_pred             CCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe--CCCHHHHHHHHHHHHHHHHHhh
Confidence            566655 4446642      2445554 4567899998863     136788865  5789999999999999987653

>PRK06855 aminotransferase; Validated

Probab=99.93  E-value=1.2e-23  Score=213.35  Aligned_cols=328  Identities=15%  Similarity=0.090  Sum_probs=201.9

Q ss_pred             CCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      |+.++++..|.... .+. .++.+.+++.+.+.+..   +....+....++.+++++.+..+    .++|++|+|+++|+
T Consensus        31 g~~~~~~~~G~p~~-~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al  109 (433)
T PRK06855         31 GVKITWENIGDPIA-KGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI  109 (433)
T ss_pred             cccccccccCCCcc-cCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHH
Confidence            45566665554311 233 46678888888765421   11112233446677777766543    77899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-CC-
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-GK-  246 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~-  246 (451)
                      ..++.+ .           .++|.|++.+|+|+++........+.....   .+..+...+  ..|+++|++.+.. .+ 
T Consensus       110 ~~~~~l-~-----------~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~---v~~~~~~~~--~~d~~~l~~~~~~~~~~  172 (433)
T PRK06855        110 AKIYGL-L-----------RREARVIGPSPAYSTHSSAEAAHAGYPPVT---YRLDPENNW--YPDLDDLENKVKYNPSI  172 (433)
T ss_pred             HHHHHh-c-----------CCCCeEEEeCCCCchHHHHHHHhcCCeEEE---EecccccCC--CCCHHHHHHHHhcCCCc
Confidence            888752 2           168999999999998653322221211100   111111000  0278999999863 23 


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cc-ccc-C-CCcceeeeccccc-CCc
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-EHY-G-IFPDIMTLAKPLA-GGL  321 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~~-~-~~pdi~t~sK~lg-~G~  321 (451)
                      .+++++.|.|++ | .+++.+.+++|.++|++||++||+||+|..+-+.+..+ .. ... + ...-+.+|||.++ .|+
T Consensus       173 ~~i~l~~P~NPT-G-~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGl  250 (433)
T PRK06855        173 AGILLINPDNPT-G-AVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGS  250 (433)
T ss_pred             eEEEEECCCCCC-C-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcc
Confidence            445566665444 4 46899999999999999999999999999875444311 11 111 1 1233458999997 799


Q ss_pred             cccccccc-----H---HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc
Q 013008          322 PIGAALVT-----E---KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK  379 (451)
Q Consensus       322 ~iG~v~~~-----~---~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~  379 (451)
                      |+||++++     +   .+++.+..... ...+.+.++|.++.++|+.-.-++++++              .++.++.+.
T Consensus       251 RiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~  329 (433)
T PRK06855        251 RCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLK  329 (433)
T ss_pred             eEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence            99999972     2   33343322211 2345678889888888752111233322              234444333


Q ss_pred             eecc-cceeEEEEecC-----------------------------ChHHHHHH-HHHCCceeeecCC----CCEEEEeCC
Q 013008          380 DVRG-LGLIIGIEFDV-----------------------------SATPVVDA-CRDSGLLVLTAGK----GNVVRLVPP  424 (451)
Q Consensus       380 ~v~g-~G~~~~~~~~~-----------------------------~~~~~~~~-l~~~Gv~~~~~~~----~~~iri~~~  424 (451)
                      ..++ .|+++|+.+..                             +..+++.. +.++||.+.|+..    ++.+|++..
T Consensus       330 ~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~  409 (433)
T PRK06855        330 VNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLL  409 (433)
T ss_pred             ccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEEC
Confidence            3334 35788887742                             13455544 4577999998732    235788665


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q 013008          425 LIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       425 ~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      . .++|+|++++++|.+++++.
T Consensus       410 ~-~~~~~i~~~~~~l~~~~~~~  430 (433)
T PRK06855        410 E-RDEEKFEWIYQTLAEKIEEY  430 (433)
T ss_pred             C-CcHHHHHHHHHHHHHHHHHH
Confidence            4 48999999999999999764

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.4e-23  Score=209.24  Aligned_cols=316  Identities=15%  Similarity=0.089  Sum_probs=205.6

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHhhc------cCCCeEEecCCHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVAC------SFADRVFFSNTGTEAN  168 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~------~~~e~v~~~~sG~eA~  168 (451)
                      ..++|+.+|..  +++ .+|.+.+++.+.+....   .++..+....+..+++++.+.      ...++|++|+|+++|+
T Consensus        28 ~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al  104 (374)
T PRK02610         28 IQLDRLDTNEF--PYD-LPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELI  104 (374)
T ss_pred             cceeEecCCCC--CCC-CCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHH
Confidence            45888888865  344 67889999998776521   111111122244555555433      2257899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC---
Q 013008          169 EAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP---  244 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---  244 (451)
                      ..++.+...           ++ ++|++.+|+|.++...+...+.... .   .+..++...   -|+++|+++++.   
T Consensus       105 ~~~~~~~~~-----------~g~~~Vlv~~P~y~~~~~~~~~~g~~~~-~---~~~~~~~~~---~d~~~l~~~~~~~~~  166 (374)
T PRK02610        105 RSLLIATCL-----------GGEGSILVAEPTFSMYGILAQTLGIPVV-R---VGRDPETFE---IDLAAAQSAIEQTQN  166 (374)
T ss_pred             HHHHHHHcC-----------CCCCeEEEcCCChHHHHHHHHHcCCEEE-E---ecCCcccCC---CCHHHHHHHHHhhcC
Confidence            877764431           34 4799999999887655433332111 1   111111000   278999988863   


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCccc
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPI  323 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~i  323 (451)
                      .++++|++.+.++++|. ..+.+.+++|.++|  ++++||+||+|..|.............-..-+-+|||.+| .|+|+
T Consensus       167 ~~~k~i~l~~P~NPTG~-~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRi  243 (374)
T PRK02610        167 PPVRVVFVVHPNSPTGN-PLTAAELEWLRSLP--EDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRV  243 (374)
T ss_pred             CCceEEEEeCCCCCCCC-CCCHHHHHHHHhcc--CCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccce
Confidence            46677766555666665 56888899999987  4999999999988732111111111111112448999997 69999


Q ss_pred             ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceecccceeEEE
Q 013008          324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVRGLGLIIGI  390 (451)
Q Consensus       324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~g~G~~~~~  390 (451)
                      ||+++++++++.+....  ..++.+.+++.++.++++..  +.+.+.             .++.++.+...+..|.++|+
T Consensus       244 G~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~  319 (374)
T PRK02610        244 GYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQERDRLYQALQELPQLRVWPSAANFLYL  319 (374)
T ss_pred             eeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEeCCCcceEEEE
Confidence            99999999998876432  34566888888888877521  222221             22444444334566888888


Q ss_pred             Eec--CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          391 EFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       391 ~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .+.  .+..++++.|.++||.+.+..  +.+|++..   +.+++++++++|+++++.+
T Consensus       320 ~l~~~~~~~~~~~~l~~~gi~v~~~~--~~lRls~~---~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        320 RLSQDAALAALHQALKAQGTLVRHTG--GGLRITIG---TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             eCCCCCCHHHHHHHHHHCCEEEEeCC--CeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence            874  356789999999999998642  67899644   4677999999999988754

>PLN02656 tyrosine transaminase

Probab=99.93  E-value=3.2e-23  Score=209.07  Aligned_cols=328  Identities=16%  Similarity=0.177  Sum_probs=211.2

Q ss_pred             CCCEEEeeccCcccccC-CCCCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNAL-GHGDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~l-G~~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA  167 (451)
                      .|+.+|+|..|...... -..++.+++++.+.+.... ..+  ..+....+..+++++.+..+    .++|++|+|+++|
T Consensus        29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a  108 (409)
T PLN02656         29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQA  108 (409)
T ss_pred             cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHH
Confidence            67889999888764322 2367889999988876521 111  11222335566666655433    6799999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCe
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT  247 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  247 (451)
                      +..++.++.           +++|.|++.+|+|..+.......+.....    .+..+...+  .-|++++++++.++..
T Consensus       109 l~~~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----i~~~~~~~~--~~d~~~l~~~~~~~~~  171 (409)
T PLN02656        109 IDVALSMLA-----------RPGANILLPRPGFPIYELCAAFRHLEVRY----VDLLPEKGW--EVDLDAVEALADQNTV  171 (409)
T ss_pred             HHHHHHHHh-----------CCCCeEEEeCCCCCcHHHHHHHcCCEEEE----EeCCCcCCC--CCCHHHHHHHhccCce
Confidence            999998764           16899999999997664333222211110    111110000  0278999998876566


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccC---CCcceeeeccccc-CCcc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYG---IFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~---~~pdi~t~sK~lg-~G~~  322 (451)
                      +++++.|.| ++|. +++.+.+++|.++|++||++||+||+|.+|-..+..+ ....++   ....+.+|||.++ .|+|
T Consensus       172 ~v~l~~P~N-PtG~-~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlR  249 (409)
T PLN02656        172 ALVIINPGN-PCGN-VYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWR  249 (409)
T ss_pred             EEEEECCCC-CCCC-CCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCccee
Confidence            677777754 4443 5789999999999999999999999998875444321 111111   1223447999966 6999


Q ss_pred             ccccccc--------HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc-
Q 013008          323 IGAALVT--------EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK-  379 (451)
Q Consensus       323 iG~v~~~--------~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~-  379 (451)
                      +||++++        +++++.+..... ...+.+++++.++.++|+.. .+.++++              .++.++... 
T Consensus       250 iG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~  327 (409)
T PLN02656        250 LGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVPTILEQT-DESFFKKTINILKQSSDICCDRIKEIPCITC  327 (409)
T ss_pred             EEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcC
Confidence            9999983        577777653211 12346788999998888631 1233322              233344322 


Q ss_pred             eecc-cceeEEEEecC-------ChHHH-HHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          380 DVRG-LGLIIGIEFDV-------SATPV-VDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       380 ~v~g-~G~~~~~~~~~-------~~~~~-~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..++ .|+++|+.++.       ...++ .+.|.++||.+.|+.   ..+++|+++.  .+++++++++++|.+++...
T Consensus       328 ~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~~~~~~~  404 (409)
T PLN02656        328 PHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEEALGRIKSFYLRH  404 (409)
T ss_pred             CcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence            1233 46778887731       23344 456678899999873   2467888655  48999999999999988754

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.93  E-value=2.3e-23  Score=203.85  Aligned_cols=305  Identities=20%  Similarity=0.218  Sum_probs=220.6

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a  175 (451)
                      .++|+.+|-.  ++| .+|.+.+++.+.++.+    ..|+.....+|.+.+++.++   .+.|+.++|..|.+...+++.
T Consensus        23 ~~i~LssNen--P~g-p~~~~~~~~~~~~~~~----~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~   95 (356)
T COG0079          23 GIIKLSSNEN--PYG-PPPKVIEAIRAALDKL----NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF   95 (356)
T ss_pred             cceeecCCCC--CCC-CCHHHHHHHHHHHHhh----ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh
Confidence            6899999865  676 5588999998888753    33555567888899988887   579999999999999999977


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI  255 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~  255 (451)
                      +.           ++|+|++..|+|.-+...+...+.... .   .+..+ +.    .|++.+.+.+.++...+++|+|+
T Consensus        96 ~~-----------~gd~vl~~~Ptf~~Y~~~a~~~g~~~~-~---v~~~~-~~----~d~~~~~~~~~~~~~lv~i~nPN  155 (356)
T COG0079          96 VE-----------PGDTVLIPEPTFSMYEIAAQLAGAEVV-K---VPLKE-FR----LDLDAILAAIRDKTKLVFLCNPN  155 (356)
T ss_pred             hc-----------CCCEEEEcCCChHHHHHHHHhcCCeEE-E---ecccc-cc----cCHHHHHHhhhcCCCEEEEeCCC
Confidence            72           678999999999877655544332211 1   11111 11    37888888886634455666676


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee---eeccccc-CCcccccccccHH
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM---TLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      |++| . ..+.+.++++.+.|.+ +++||+||+|.+|..  . .......-.++++   ||||++| +|+|+||++++++
T Consensus       156 NPTG-~-~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~--~-~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~  229 (356)
T COG0079         156 NPTG-T-LLPREELRALLEALPE-GGLVVIDEAYIEFSP--E-SSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPE  229 (356)
T ss_pred             CCCC-C-CCCHHHHHHHHHhCCC-CcEEEEeCchhhcCC--c-hhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHH
Confidence            6665 3 4688889999999888 999999999999854  1 1122212123243   8999999 6999999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc-eecccceeEEEEecC-C
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK-DVRGLGLIIGIEFDV-S  395 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~-~v~g~G~~~~~~~~~-~  395 (451)
                      +++.++..  ...|+.|.++++++.++|+.-   ++.+.              .++.++ +. ..+..+.|+.+.+.. .
T Consensus       230 ~i~~l~~v--r~p~~v~~~a~~aa~aal~~~---~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~aNFvlv~~~~~~  303 (356)
T COG0079         230 LIAALNKV--RPPFNVSSPALAAAIAALRDA---DYLEESVERIREERERLYAALKALG-LFGVFPSQANFVLVRVPDAE  303 (356)
T ss_pred             HHHHHHHh--cCCCCCCHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcEEEEECCCcc
Confidence            99999743  567888999999999988632   33222              334444 22 355668888888732 2


Q ss_pred             hHHHHHHHHHCCceeeecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +..+.+.|+++||+++.+..    .+++|+++   -|+|+.++++++|.++++.
T Consensus       304 ~~~l~~~L~~~giivR~~~~~~~~~~~lRitv---gt~een~~ll~AL~~~~~~  354 (356)
T COG0079         304 AAALAEALLKKGILVRDCSSVGLLPGYLRITV---GTPEENDRLLAALREVLKG  354 (356)
T ss_pred             HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEe---CCHHHHHHHHHHHHHHHhc
Confidence            55799999999999998742    35899964   4888889999999988754

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.93  E-value=2.6e-23  Score=208.30  Aligned_cols=317  Identities=15%  Similarity=0.134  Sum_probs=205.7

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccC--CCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA  167 (451)
                      .|..++||..|..  .++ .++.+.+++.+.+.... +.+.  .+..+.+.++++++.+.++    .+ .|++|+|+++|
T Consensus        27 ~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~  103 (383)
T TIGR03540        27 EGVDVISLGIGDP--DLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEG  103 (383)
T ss_pred             cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHH
Confidence            3567788888865  344 46788999888765321 1111  1122335666666665433    34 68999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC--CeeEeeCCCHHHHHHhcCCC
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~  245 (451)
                      +..++++..           .++|.|++.+|+|.++.......+.... .   .+...  +..    -|++++++.+.+ 
T Consensus       104 l~~~~~~~~-----------~~gd~vlv~~P~y~~~~~~~~~~G~~v~-~---v~~~~~~g~~----~d~~~l~~~~~~-  163 (383)
T TIGR03540       104 IAHIPLAFV-----------NPGDIVLVPDPGYPVYRIGTLFAGGEPY-E---MPLKEENGFL----PDFDAIPEDIAK-  163 (383)
T ss_pred             HHHHHHHhC-----------CCCCEEEEeCCCCcchHHHHHhcCCEEE-E---EecCcccCCc----cCHHHHHhhccc-
Confidence            999988654           2689999999999887655433332111 1   11111  111    278899888864 


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-ccc-cc---cCCCcceeeeccccc-C
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAH-EH---YGIFPDIMTLAKPLA-G  319 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~-~~---~~~~pdi~t~sK~lg-~  319 (451)
                      ++++|++...++++| ..++.+.+++|.++|++||+++|+||+|..+...+.. ... ..   .+....+.+|||.+| .
T Consensus       164 ~~~~v~i~~P~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~  242 (383)
T TIGR03540       164 KAKLMFINYPNNPTG-AVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMT  242 (383)
T ss_pred             cceEEEEeCCCCCcC-ccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCc
Confidence            455666553344455 4679999999999999999999999999876443321 111 11   122344568999997 6


Q ss_pred             CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-c
Q 013008          320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-L  384 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~  384 (451)
                      |+|+||+++++++++.+.........+.+.+.+.++.++|+.  .+++.++              .++++. +....+ .
T Consensus       243 GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~  319 (383)
T TIGR03540       243 GWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNG--PQDVVKEIRKIYQRRRDLLLEALKKIG-IDVEKPKA  319 (383)
T ss_pred             cceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhCC-CEecCCCc
Confidence            999999999999988875432223345566778888777753  2333322              223332 322333 3


Q ss_pred             ceeEEEEec--CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          385 GLIIGIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       385 G~~~~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      |+++|+.++  .+..++++.|+ ++||.+.|+..     .+++|++.+  .+++++++++++|.+
T Consensus       320 ~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       320 TFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT--VPDERLEEAVARIKK  382 (383)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec--CCHHHHHHHHHHHhh
Confidence            666788874  35678898886 57999998621     257888654  678888888888764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.92  E-value=1.7e-23  Score=205.42  Aligned_cols=290  Identities=13%  Similarity=0.083  Sum_probs=194.8

Q ss_pred             CCC-CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008          112 LGH-GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE  188 (451)
Q Consensus       112 lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~  188 (451)
                      ||. .||+|+++..+++++++     ++.+.+.+|+++|+++++.  +.+++++||++||..++.++.           .
T Consensus        30 lgl~~~~~~~~~~~~~~~~~~-----g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~-----------~   93 (346)
T TIGR03576        30 TGLAGGFKIDEEDLELLETYV-----GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE-----------P   93 (346)
T ss_pred             ccCCCChhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC-----------C
Confidence            555 69999999999998863     3457799999999999985  899999999999999998665           2


Q ss_pred             CCceEEEEcC--CccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCH
Q 013008          189 PATEFVSFTN--SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK  266 (451)
Q Consensus       189 ~~~~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~  266 (451)
                      +++.|+++.|  .+|.+......+.+..              ++.++|+++++. .  .+..+|++++ .+++|.+ .+.
T Consensus        94 ~gd~Vli~~~d~p~~~s~~~~~~l~ga~--------------~~~~~~l~~l~~-~--~~~~lIiitg-~s~~G~v-~~~  154 (346)
T TIGR03576        94 PGRKVVHYLPEKPAHPSIPRSCKLAGAE--------------YFESDELSELKK-I--DGTSLVVITG-STMDLKV-VSE  154 (346)
T ss_pred             CCCEEEECCCCCCCchhHHHHHHHcCCE--------------EeccCCHHHHhh-C--cCceEEEEEC-CCCCCcc-cCH
Confidence            6888887533  3555554444444321              122356766543 2  2356777776 4667764 467


Q ss_pred             HHHHHHHHHHHHhCCEEEEeccccCC--CcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCC
Q 013008          267 EFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGST  344 (451)
Q Consensus       267 ~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t  344 (451)
                      +.|++|.++|++||+++|+||+|..+  +..|.. ....++...-+.||||+++ |+++||+++++++++.+........
T Consensus       155 ~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~~divv~s~SKala-G~r~G~v~~~~~li~~l~~~~~~~~  232 (346)
T TIGR03576       155 EDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP-PALDLGADLVVTSTDKLMD-GPRGGLLAGRKELVDKIKSVGEQFG  232 (346)
T ss_pred             HHHHHHHHHHHHcCCEEEEECCccccccccCCCC-CHHHcCCcEEEeccchhcc-ccceEEEEeCHHHHHHHHHhhcCcc
Confidence            88999999999999999999999642  112322 1223332222347899764 5789999999999999876544455


Q ss_pred             CCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecccceeEEEEecC-ChHHHHHH-HHHCCceeee
Q 013008          345 FAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRGLGLIIGIEFDV-SATPVVDA-CRDSGLLVLT  412 (451)
Q Consensus       345 ~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~-~~~~~~~~-l~~~Gv~~~~  412 (451)
                      ++.+++.++++.++|+.+..+...+.          +++.+   ...+..+.|+++.+.. +..+++.. |.++||++.|
T Consensus       233 ~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~---~~~~~~~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~  309 (346)
T TIGR03576       233 LEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL---NVERTPTGFVIKGVEEEKLIEIGLDLLRNYGIITIT  309 (346)
T ss_pred             cCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC---CCCcCCCeEEEEeCCCCCHHHHHHHHHHhCCEEEeC
Confidence            56788899999999986533222222          12222   1122234467777643 23344444 5568999998


Q ss_pred             cC----CCCEEEEeCCCCCCHH---HHHHHHHHHHHHH
Q 013008          413 AG----KGNVVRLVPPLIISEQ---ELDQAVEILCKTL  443 (451)
Q Consensus       413 ~~----~~~~iri~~~~~~t~e---~i~~~l~~l~~~l  443 (451)
                      +.    .++++||++.  .+++   +++.++++|++.+
T Consensus       310 ~~~f~~~~~~vRis~~--~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       310 AVGMPGASKTLRFDLA--AKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             CcccCCCCCeEEEEEe--cChHHhcCHHHHHHHHHhcc
Confidence            53    1368888544  4444   7999999988754

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.92  E-value=4.4e-23  Score=208.36  Aligned_cols=332  Identities=14%  Similarity=0.089  Sum_probs=213.7

Q ss_pred             EEecCCCEEEeeccCccccc--CCCCCHHHHHHHHHHHhhcc-cccC--CCCCHHHHHHHHHHhhc----------cCCC
Q 013008           92 LYDAEGREYLDLSSGIAVNA--LGHGDADWIKAVVDQANVLT-HVSN--MYYSIPQIELAKRLVAC----------SFAD  156 (451)
Q Consensus        92 l~d~~G~~~iD~~~~~~~~~--lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~l~~~l~~~----------~~~e  156 (451)
                      +.+..|+.+|||..|.....  + ..++.+.+++.+.+.... ..+.  .+..+.+..+++++.+.          ...+
T Consensus        27 ~~~~~~~~~i~l~~g~p~~~~~~-~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~  105 (412)
T PTZ00433         27 KPSPSPKSIIKLSVGDPTLDGNL-LTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD  105 (412)
T ss_pred             ccCCCCCCeeecCCcCCCCcCCC-CCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh
Confidence            34567889999999876421  2 257889999988776421 1111  12233355666666543          2367


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE  236 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  236 (451)
                      ++++|+|+++|+..++++..           .+++.|++.+|+|+.+.......+.... .   .+..++..+  --|++
T Consensus       106 ~i~it~G~~~al~~~~~~~~-----------~~gd~vlv~~P~y~~~~~~~~~~g~~~~-~---i~~~~~~~~--~~d~~  168 (412)
T PTZ00433        106 NVVLCSGVSHAILMALTALC-----------DEGDNILVPAPGFPHYETVCKAYGIEMR-F---YNCRPEKDW--EADLD  168 (412)
T ss_pred             hEEEeCChHHHHHHHHHHhc-----------CCCCEEEEccCCcccHHHHHHHcCCEEE-E---EecCccccC--cCCHH
Confidence            99999999999999999665           2689999999999887654433322111 0   111111000  02788


Q ss_pred             HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccC-C--Ccceee
Q 013008          237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYG-I--FPDIMT  312 (451)
Q Consensus       237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~-~--~pdi~t  312 (451)
                      +|++.+.++ +++|++...++++| ...+.+.+++|.++|++||++||+||+|.+|-+.+..+ ....+. -  ..-+.+
T Consensus       169 ~l~~~~~~~-~~~i~~~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S  246 (412)
T PTZ00433        169 EIRRLVDDR-TKALIMTNPSNPCG-SNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGG  246 (412)
T ss_pred             HHHHHhccC-ceEEEEeCCCCCCC-cccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEcc
Confidence            999888653 44444433344455 46789999999999999999999999998874443211 111111 1  112337


Q ss_pred             eccccc-CCcccccccc------cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------H
Q 013008          313 LAKPLA-GGLPIGAALV------TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------K  371 (451)
Q Consensus       313 ~sK~lg-~G~~iG~v~~------~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~  371 (451)
                      |||.++ .|+|+||+++      .+++++.+.... ..+++.+++++.++.++|+.- .+.++++              .
T Consensus       247 fSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~l~~~  324 (412)
T PTZ00433        247 TAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEGAMVLYNH  324 (412)
T ss_pred             chhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHH
Confidence            999996 6999999986      245666664321 224567889998888877631 1233322              2


Q ss_pred             HhCCCCcceecc-cceeEEEEecC-------ChHHHHHHHHH-CCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          372 LARNPHVKDVRG-LGLIIGIEFDV-------SATPVVDACRD-SGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       372 ~~~~~~~~~v~g-~G~~~~~~~~~-------~~~~~~~~l~~-~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                      ++.+..+..+.+ .|+++|+.++.       +..++++.|++ +||.+.|+..   .+++|+++.  ..++++++++++|
T Consensus       325 L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~al~~l  402 (412)
T PTZ00433        325 IGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS--RPVEVLREAVERI  402 (412)
T ss_pred             HhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHH
Confidence            233323333334 47788887742       45789999984 7999998642   367888654  4689999999999


Q ss_pred             HHHHHHHh
Q 013008          440 CKTLPVLD  447 (451)
Q Consensus       440 ~~~l~~~~  447 (451)
                      .+++++.+
T Consensus       403 ~~~~~~~~  410 (412)
T PTZ00433        403 KAFCERHK  410 (412)
T ss_pred             HHHHHHhc
Confidence            99987654

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.92  E-value=3.7e-23  Score=207.27  Aligned_cols=318  Identities=14%  Similarity=0.129  Sum_probs=203.5

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccC--CCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~  168 (451)
                      |.+++|+..|..  .++ .+|.+.+++.+.+.... ..+.  .+..+.+..+++++.+.++    .+ .|++|+|+++|+
T Consensus        30 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i  106 (385)
T PRK09276         30 GVDVISLGIGDP--DLP-TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGI  106 (385)
T ss_pred             CCCEEEecCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence            456788888865  233 56789999988876421 1111  1122335666666655433    44 588999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..++++..           +++|.|++.+|+|.++...+...+. ....   .+...+..+.  .|++++++.+.. +++
T Consensus       107 ~~~~~~~~-----------~~gd~Vl~~~P~y~~~~~~~~~~g~-~~~~---v~~~~~~g~~--~d~~~l~~~~~~-~~~  168 (385)
T PRK09276        107 AHIPLAFV-----------NPGDVVLVPDPGYPVYKIGTIFAGG-EPYF---MPLKEENGFL--PDLDAIPEDVAK-KAK  168 (385)
T ss_pred             HHHHHHhC-----------CCCCEEEEcCCCCcChHHHHHHcCC-EEEE---EecCCCCCCc--CCHHHHHHhccc-cce
Confidence            99988654           2689999999999887654433222 1111   1111110010  278888888764 455


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-c-ccc---cCCCcceeeeccccc-CCcc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A-HEH---YGIFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~-~~~---~~~~pdi~t~sK~lg-~G~~  322 (451)
                      +|++.+.++++|. .++.+.+++|.++|++||+++|+||+|..|...+... . ...   .+....+.+|||.+| .|+|
T Consensus       169 ~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlR  247 (385)
T PRK09276        169 LMFINYPNNPTGA-VADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWR  247 (385)
T ss_pred             EEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchh
Confidence            5655543455554 6799999999999999999999999998764333211 1 111   123345568999997 6999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-ccee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~  387 (451)
                      +||+++++++++.+.........+.+++.+.++.++|+.  .+.++++              .++.+. +....+ .|++
T Consensus       248 iG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~  324 (385)
T PRK09276        248 IGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDILVEGLRKLG-LEVEPPKATFY  324 (385)
T ss_pred             heeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceE
Confidence            999999999998876432223334566777777777752  2233222              222332 222333 3566


Q ss_pred             EEEEec--CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          388 IGIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       388 ~~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      +++.+.  .+..++++.|+ ++||.+.|+..     .+++|++++  .+++++.+++++|.+
T Consensus       325 ~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~  384 (385)
T PRK09276        325 VWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--VPDERIEEAVERIKK  384 (385)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence            788774  35678888887 47999998631     257888654  578889888888764

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.92  E-value=7.3e-23  Score=205.27  Aligned_cols=322  Identities=14%  Similarity=0.136  Sum_probs=211.7

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhccc---ccCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH---VSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~  170 (451)
                      .++|+..|...  +. .++.+.+|+.+.+.....   ....+..+.+.++++++++.++     .+.+++++|+++|+..
T Consensus        28 ~~~~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~  104 (389)
T PRK05957         28 GTISLGQGVVS--YP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN  104 (389)
T ss_pred             CeEEccCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence            35777777653  33 567889999887654321   1112223447788888887765     3579999999999988


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++.+.           .++|.|++.+|+|..+...... .|....   +.+...+..    -|++++++.+++ ++++|
T Consensus       105 ~~~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~-~g~~~~---~v~~~~~~~----~d~~~l~~~i~~-~~klv  164 (389)
T PRK05957        105 AILAIT-----------DPGDEIILNTPYYFNHEMAITM-AGCQPI---LVPTDDNYQ----LQPEAIEQAITP-KTRAI  164 (389)
T ss_pred             HHHHhc-----------CCCCEEEEeCCCCcCHHHHHHh-cCCEEE---EeecCCCCC----cCHHHHHHhcCc-CceEE
Confidence            887654           1688999999999776433222 121110   011111111    278999999875 45555


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cc-ccccC---CCcceeeeccccc-CCcccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WA-HEHYG---IFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~-~~~~~---~~pdi~t~sK~lg-~G~~iG  324 (451)
                      ++...++++|. ..+.+.+++|.++|++||+++|+||+|.+|...+.. .. ....+   ....+.+|||.+| .|+|+|
T Consensus       165 ~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG  243 (389)
T PRK05957        165 VTISPNNPTGV-VYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIG  243 (389)
T ss_pred             EEeCCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeE
Confidence            55544555554 578999999999999999999999999877443321 11 11112   2233558999998 699999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCc-ceeccc-ceeE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHV-KDVRGL-GLII  388 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~-~~v~g~-G~~~  388 (451)
                      |+++++++++.+.........+.+.+++.++..+|+.  ..+++++              .++.++.+ ....+. |+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~  321 (389)
T PRK05957        244 YMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQV--GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYC  321 (389)
T ss_pred             EEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEE
Confidence            9999999999886543333445567788888777752  1223222              22333322 222233 6778


Q ss_pred             EEEec--CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          389 GIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       389 ~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      |+.+.  .+..++++.|+ ++||.+.|+..     ++++|++... .+++++++++++|.+.++++-
T Consensus       322 ~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~~~~  387 (389)
T PRK05957        322 FLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLKTIV  387 (389)
T ss_pred             EEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHHhhh
Confidence            88873  45678999987 58999998631     2578987643 479999999999999987754

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.92  E-value=2.9e-23  Score=208.42  Aligned_cols=323  Identities=16%  Similarity=0.118  Sum_probs=207.4

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAI  172 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al  172 (451)
                      .++||..+..  .++ .++.+.+++.+.+......+  ..+....+.++++++.+.++    .+++++|+|+++|+..++
T Consensus        34 ~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~  110 (391)
T PRK08361         34 NVISLGIGEP--DFD-TPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAF  110 (391)
T ss_pred             CeEEcCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHH
Confidence            5688887765  344 36888899888776422111  11122234555555544333    679999999999999998


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV  252 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~  252 (451)
                      +.+.           .+++.|++.+|+|.++...+. ..+.....   .+..++..+  ..|++++++.+.++ +++|++
T Consensus       111 ~~l~-----------~~g~~Vlv~~p~y~~~~~~~~-~~g~~~~~---v~~~~~~~~--~~d~~~l~~~i~~~-~~~v~i  172 (391)
T PRK08361        111 ESLL-----------EEGDEVIIPDPAFVCYVEDAK-IAEAKPIR---IPLREENEF--QPDPDELLELITKR-TRMIVI  172 (391)
T ss_pred             HHhc-----------CCCCEEEEcCCCCcccHHHHH-HcCCEEEE---EecCCccCC--CCCHHHHHHhcccc-cEEEEE
Confidence            8654           168899999999988754332 22221111   111111000  03789999988754 445554


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccccccc--CCCcceeeeccccc-CCcccccccc
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHY--GIFPDIMTLAKPLA-GGLPIGAALV  328 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~--~~~pdi~t~sK~lg-~G~~iG~v~~  328 (451)
                      ...++++|. ..+.+.+++|.++|+++++++|+||+|..|...+. .......  ....-+.+|||.++ .|+|+||+++
T Consensus       173 ~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~  251 (391)
T PRK08361        173 NYPNNPTGA-TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIA  251 (391)
T ss_pred             eCCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhcc
Confidence            433455554 56889999999999999999999999987643332 1111111  11122347899998 7999999999


Q ss_pred             cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ceeEEEEec
Q 013008          329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLIIGIEFD  393 (451)
Q Consensus       329 ~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~~~~~  393 (451)
                      ++++++.+.......+++.+.+.+.++.++|+.-...+++++              .++.++.+....+. |+++|+.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~  331 (391)
T PRK08361        252 PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANID  331 (391)
T ss_pred             CHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECC
Confidence            999888765332233456678888888887753211112211              23444444434444 567777774


Q ss_pred             ---CChHHHHHHHHH-CCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          394 ---VSATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       394 ---~~~~~~~~~l~~-~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                         .+..++++.|++ +||.+.|+..     .+++|++..  .+++++++++++|.+++++
T Consensus       332 ~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        332 ETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             CCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence               357788888875 7999988631     257888654  5788999999999998864

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.92  E-value=3.9e-23  Score=205.55  Aligned_cols=306  Identities=15%  Similarity=0.080  Sum_probs=199.6

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~  170 (451)
                      ++..++||..+..   ....+|.+.+++.+......+....+....+..+++++.+..+     .++|++|+|+++|+..
T Consensus        25 ~~~~~i~l~~~~p---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~  101 (364)
T PRK07865         25 HPDGIVDLSVGTP---VDPVPPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAW  101 (364)
T ss_pred             cCCCEEEcCCCCC---CCCCCHHHHHHHHHHHhhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHH
Confidence            3446788888754   2334688888887765432222122223446777777766532     6799999999999988


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      ++.++.  .        .+++.|++.+|+|.++.......+               ...+.++++++++.    .++++|
T Consensus       102 ~~~~l~--~--------~~gd~Vl~~~p~y~~~~~~~~~~g---------------~~~~~~~~~~~l~~----~~~~~v  152 (364)
T PRK07865        102 LPTLLG--L--------GPGDVVVIPELAYPTYEVGARLAG---------------ATVVRADSLTELGP----QRPALI  152 (364)
T ss_pred             HHHHHc--C--------CCCCEEEECCCCcccHHHHHHhcC---------------CEEEecCChhhCCc----ccceEE
Confidence            776541  1        168999999999987754332221               11222234444332    356677


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccc------cCCCcceeeeccccc-CCcc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEH------YGIFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~------~~~~pdi~t~sK~lg-~G~~  322 (451)
                      ++++.++++|. +.+.+.+++|.++|++||+++|+||+|.++...+.... ...      .+...-+.+|||.++ .|+|
T Consensus       153 ~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR  231 (364)
T PRK07865        153 WLNSPSNPTGR-VLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYR  231 (364)
T ss_pred             EEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCcee
Confidence            77655556664 56899999999999999999999999987754443211 111      011122347999996 6999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-ccee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~  387 (451)
                      +||+++++++++.+........++.+++.+.++.++|+.   +++.++              .++.+. +....+ .|++
T Consensus       232 iG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~  307 (364)
T PRK07865        232 AGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGD---DAHVREQRERYARRRAVLRPALEAAG-FRVDHSEAGLY  307 (364)
T ss_pred             eEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCCCccEE
Confidence            999999999988876433334566788888888777752   222221              222232 222223 3567


Q ss_pred             EEEEecCChHHHHHHHHHCCceeeecC-----CCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          388 IGIEFDVSATPVVDACRDSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       388 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      +|+.+......+.+.|.++||++.|+.     ..+++|++++  .++|++++++++|.
T Consensus       308 ~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~  363 (364)
T PRK07865        308 LWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA  363 (364)
T ss_pred             EEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence            777765556778889999999998853     1357888655  47899999999885

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.92  E-value=2.4e-23  Score=209.68  Aligned_cols=326  Identities=13%  Similarity=0.123  Sum_probs=205.6

Q ss_pred             CCEEEeeccCcccc--cCCCCCHHHHHHHHHHHhhccc-cc--CCCCCHHHHHHHHHHhhc---cCCCeEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVN--ALGHGDADWIKAVVDQANVLTH-VS--NMYYSIPQIELAKRLVAC---SFADRVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~~~-~~--~~~~~~~~~~l~~~l~~~---~~~e~v~~~~sG~eA~  168 (451)
                      |+.+++|..|.+..  .++ .++.+.+++.+.+..... .+  ..+..+.+.++++.+.+.   ...++|++++|+++|+
T Consensus        30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al  108 (401)
T TIGR01264        30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAI  108 (401)
T ss_pred             CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHH
Confidence            46788888877632  233 578899999887765211 11  111122244455444432   1267899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++++.           .+++.|++.+|+|..+.......+. ....   .+...+..+  --|++.+++.+..+ ++
T Consensus       109 ~~~~~~l~-----------~~gd~v~i~~P~y~~~~~~~~~~g~-~v~~---~~~~~~~~~--~~d~~~l~~~~~~~-~~  170 (401)
T TIGR01264       109 EMCIAALA-----------NAGQNILVPRPGFPLYETLAESMGI-EVKL---YNLLPDKSW--EIDLKQLESLIDEK-TA  170 (401)
T ss_pred             HHHHHHhC-----------CCCCEEEEeCCCChhHHHHHHHcCC-EEEE---eecCCccCC--CCCHHHHHHHhccC-ce
Confidence            99998665           1588999999999877544332221 1100   011110000  02789999888653 44


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc-CC--Ccceeeeccccc-CCccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-GI--FPDIMTLAKPLA-GGLPI  323 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~-~~--~pdi~t~sK~lg-~G~~i  323 (451)
                      +|++...++++|. ..+.+.+++|.++|+++|+++|+||+|.+|-+.+..+ ....+ .-  ..-+.+|||.++ .|+|+
T Consensus       171 ~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi  249 (401)
T TIGR01264       171 ALIVNNPSNPCGS-VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRL  249 (401)
T ss_pred             EEEEcCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceE
Confidence            4444333445554 5789999999999999999999999998875444311 11111 10  122347999976 69999


Q ss_pred             ccccccH------HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcce-ec
Q 013008          324 GAALVTE------KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKD-VR  382 (451)
Q Consensus       324 G~v~~~~------~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~-v~  382 (451)
                      ||+++++      ++++.+.... ...++.+++++.++.++|+. ..++++++              .++.++.+.. .+
T Consensus       250 G~iv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p  327 (401)
T TIGR01264       250 GWIIIHDRRGILRDIRDGLVKLS-QRILGPCTIVQGALPSILLR-TPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMP  327 (401)
T ss_pred             EEEEecCcchhHHHHHHHHHHHh-hccCCCCcHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence            9999863      3444433211 12455678888888888863 12333322              2344443332 34


Q ss_pred             ccceeEEEEecC-------ChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFDV-------SATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       383 g~G~~~~~~~~~-------~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..|+++|+.+..       ...++++.|+ ++||++.|+.   ..+++|++..  .+++++++++++|.++++++
T Consensus       328 ~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       328 SGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLT--VPVVMMEEACSRIQEFCERH  400 (401)
T ss_pred             CeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEc--CCHHHHHHHHHHHHHHHhcc
Confidence            568899988731       3567888886 6899999864   2467888654  57899999999999988753

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.92  E-value=4e-23  Score=204.70  Aligned_cols=312  Identities=16%  Similarity=0.183  Sum_probs=204.4

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~  173 (451)
                      ++++++||..|..  ++| .+|.+.+|+.+.+.....    ++.....+|.+.++++++  .++|++++|+++++..+++
T Consensus        18 ~~~~~i~l~~~~~--~~~-~p~~~~~a~~~~~~~~~~----y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~   90 (356)
T PRK08056         18 SPDQLLDFSANIN--PLG-MPVSLKRAIIDNLDCAER----YPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVS   90 (356)
T ss_pred             ChhhEEEeccccC--CCC-CCHHHHHHHHHHHHhccc----CcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHH
Confidence            4678899988644  566 678899999887765322    233336788888888876  7899999999999999888


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                      ++.            ++ ++++.+|+|..+....... |.....   .+..++..+.  .| +++++.+.+ ++++|++.
T Consensus        91 ~l~------------~g-~viv~~P~y~~~~~~~~~~-g~~~~~---v~~~~~~~~~--~~-~~~~~~~~~-~~k~v~l~  149 (356)
T PRK08056         91 GLK------------PR-RAMIVTPGFAEYRRALQQV-GCEIRR---YSLREADGWQ--LT-DAILEALTP-DLDCLFLC  149 (356)
T ss_pred             HhC------------CC-CEEEeCCCcHHHHHHHHHc-CCeEEE---EecccccCCC--cc-HHHHHhccC-CCCEEEEe
Confidence            542            34 4788899997765433222 221111   1111110010  13 344455543 45555554


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc--cccccCCCcceeeeccccc-CCcccccccc-c
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHEHYGIFPDIMTLAKPLA-GGLPIGAALV-T  329 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~-~  329 (451)
                      ..++++|. ..+.+.+++|.++|++||+++|+||+|.+|...+...  ....++...-+.+|||.++ .|+|+||+++ +
T Consensus       150 ~p~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~  228 (356)
T PRK08056        150 TPNNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSD  228 (356)
T ss_pred             CCcCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCC
Confidence            34444554 6799999999999999999999999998874433211  1111222223447999999 7999999998 4


Q ss_pred             HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC
Q 013008          330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS  395 (451)
Q Consensus       330 ~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~  395 (451)
                      +++++.+...  ...++.+.+++.++.++++   .+.+.++              .++.++.+...++.|.++|+.+...
T Consensus       229 ~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~  303 (356)
T PRK08056        229 DAAVARMRRQ--QMPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARFYQALCALPLLTVWPGRANYLFLRCERP  303 (356)
T ss_pred             HHHHHHHHHh--CCCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCCCcEEEEEcCCC
Confidence            6777776532  2346667788888777774   2222211              2344444433456688888887545


Q ss_pred             hHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ..++++.|+++||.+.++..     ++++||++.   +.++.+.+++.|+++++
T Consensus       304 ~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        304 DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR---SAAENERLLAALRNVLT  354 (356)
T ss_pred             hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc---CHHHHHHHHHHHHHHHc
Confidence            67899999999999987632     257899744   77889999998887653

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.92  E-value=7.6e-23  Score=202.49  Aligned_cols=308  Identities=19%  Similarity=0.226  Sum_probs=203.8

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a  175 (451)
                      .+++||..+..  .+| .+|.+.+++.+.+.....    ++.....+|.++++++++  .++|++++|+++++..+++++
T Consensus        19 ~~~~~l~~~~~--~~~-~p~~~~~a~~~~~~~~~~----Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~   91 (354)
T PRK06358         19 NMILDFSANIN--PLG-VPESLKQAITENLDKLVE----YPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT   91 (354)
T ss_pred             cceEEecCCCC--CCC-CCHHHHHHHHHHHHhhhc----CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh
Confidence            45789987654  455 378899999987755322    233235678888888775  789999999999999988853


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI  255 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~  255 (451)
                      .             ++.|++.+|+|+.+.......+. ....   .+......+ . -| +++.+.+..+...++++.|.
T Consensus        92 ~-------------~~~v~i~~P~y~~~~~~~~~~g~-~~~~---~~~~~~~~~-~-~d-~~~~~~~~~~~~~v~~~~P~  151 (354)
T PRK06358         92 K-------------PKKVLILAPTFAEYERALKAFDA-EIEY---AELTEETNF-A-AN-EIVLEEIKEEIDLVFLCNPN  151 (354)
T ss_pred             C-------------CCcEEEecCChHHHHHHHHHcCC-eeEE---EeCccccCC-C-cc-HHHHHhhccCCCEEEEeCCC
Confidence            2             35799999999887654432221 1111   111110000 0 14 34444444333334566774


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccCCCcc---eeeeccccc-CCccccccccc-
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPD---IMTLAKPLA-GGLPIGAALVT-  329 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~~pd---i~t~sK~lg-~G~~iG~v~~~-  329 (451)
                       +++| ..++.+.+++|.++|++||+++|+||+|..|-..+... ........+.   +.+|||.++ .|+|+||++++ 
T Consensus       152 -NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~  229 (354)
T PRK06358        152 -NPTG-QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN  229 (354)
T ss_pred             -CCCC-CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCC
Confidence             4444 46799999999999999999999999998875443211 1111121222   448999999 79999999874 


Q ss_pred             HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC
Q 013008          330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS  395 (451)
Q Consensus       330 ~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~  395 (451)
                      +.+++.+....  ..++.+.+++.++.++|+   +..+.++              .++.++.+....+.|.++|+.++. 
T Consensus       230 ~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~~~~~~-  303 (354)
T PRK06358        230 KNLAEKLLQMR--EPWSINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIFFKLEK-  303 (354)
T ss_pred             HHHHHHHHHhC--CCCcchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcceEEEEEcCc-
Confidence            67777775432  256778888888888874   2222111              334444444456678888888753 


Q ss_pred             hHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ..++++.|+++||.+.++..     .+++|+++   .++++.+++++.|++++
T Consensus       304 ~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~---~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        304 PIDLRKELLKKGILIRSCSNYRGLDENYYRVAV---KSREDNKKLLKALEVIL  353 (354)
T ss_pred             hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEe---CCHHHHHHHHHHHHHHh
Confidence            47899999999999998632     25788863   37889999999998765

>PRK12414 putative aminotransferase; Provisional

Probab=99.92  E-value=4.7e-23  Score=206.30  Aligned_cols=317  Identities=16%  Similarity=0.150  Sum_probs=205.9

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHhhccCC-----CeEEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSFA-----DRVFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~-----e~v~~~~sG~eA~~~  170 (451)
                      ..+|||..|..  .++ .+|.+.+++.+.+.+....  ...+....+.++++++++.++.     +++++|+|+++|+..
T Consensus        29 ~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~  105 (384)
T PRK12414         29 HDALNLSQGAP--NFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA  105 (384)
T ss_pred             CCeEEcCCCCC--CCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence            35788888875  344 4788999988877642111  1122234477788888777662     479999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      +++.+.           .++|+|++.+|+|.++.......+ .....   .+... +..    -|++.|++.+++ ++++
T Consensus       106 ~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g-~~~~~---v~~~~~~~~----~d~~~l~~~l~~-~~~~  165 (384)
T PRK12414        106 AISALV-----------HPGDEVIYFEPSFDSYAPIVRLQG-ATPVA---IKLSPEDFR----VNWDEVAAAITP-RTRM  165 (384)
T ss_pred             HHHHhc-----------CCCCEEEEeCCCccchHHHHHHcC-CEEEE---EecCccccc----cCHHHHHhhcCc-ccEE
Confidence            998664           268999999999987654433322 11100   11111 111    278999998865 4555


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cc-cccCC---Ccceeeeccccc-CCccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-EHYGI---FPDIMTLAKPLA-GGLPI  323 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~~~~---~pdi~t~sK~lg-~G~~i  323 (451)
                      |++...++++|. +++++.+++|.++|++||+++|+||+|..|...+... .. ...+.   ..-+.+|||.++ .|+|+
T Consensus       166 v~i~~p~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRi  244 (384)
T PRK12414        166 IIVNTPHNPSAT-VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRV  244 (384)
T ss_pred             EEEcCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceE
Confidence            555544555564 5689999999999999999999999998764444211 11 11121   223347999997 79999


Q ss_pred             ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-----ChHHHHH------HHhCCCCcceeccc-ceeEEEE
Q 013008          324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-----NPAFLAS------KLARNPHVKDVRGL-GLIIGIE  391 (451)
Q Consensus       324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-----~~~~~~~------~~~~~~~~~~v~g~-G~~~~~~  391 (451)
                      ||+++++++++.+.......+++.+.+++.++.++|+.-.     .+.+.++      .++.+. +...++. |+++|+.
T Consensus       245 G~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~gg~~~~~~  323 (384)
T PRK12414        245 GYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGSR-FELLPSEGSFFMLAR  323 (384)
T ss_pred             EEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCCcceEEEEc
Confidence            9999999998887654444567788889988887775211     0111111      223332 2223343 5666666


Q ss_pred             ec----CChHHHHHH-HHHCCceeeecCC-------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          392 FD----VSATPVVDA-CRDSGLLVLTAGK-------GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       392 ~~----~~~~~~~~~-l~~~Gv~~~~~~~-------~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      +.    ....+++.. |.++||.+.|+..       .+++|++.+  .+++++++++++|.+
T Consensus       324 ~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~  383 (384)
T PRK12414        324 FRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS  383 (384)
T ss_pred             ccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence            63    234566644 5578999998631       257888655  479999999999864

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.92  E-value=3.5e-23  Score=202.93  Aligned_cols=297  Identities=16%  Similarity=0.071  Sum_probs=194.9

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK  177 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~  177 (451)
                      .++||+.+|..  ++|...+.+.+   ..+..       ++.. ..+|.+.++++++.++|++|+|+++|+..++.+ . 
T Consensus        20 ~~~i~l~~ne~--p~~~~~~~~~~---~~~~~-------yp~~-~~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~~~-~-   84 (330)
T PRK05664         20 ADWLDLSTGIA--PWPWPVPAIPA---DAWAR-------LPET-DDGLEAAARAYYGAPQLLPVAGSQAAIQALPRL-R-   84 (330)
T ss_pred             HHheeecCCcC--CCCCCCcccCH---HHHHh-------CCCC-hHHHHHHHHHHhCCCCEEECcCHHHHHHHHHHc-c-
Confidence            35789988853  56765444432   22222       2221 268889999999999999999999999887531 1 


Q ss_pred             HhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccC
Q 013008          178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG  257 (451)
Q Consensus       178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~  257 (451)
                                 ++++|++.+|+|+++...+...+.             .+..+|   ++++++.++. ...++++.|.|+
T Consensus        85 -----------~gd~v~v~~P~y~~~~~~~~~~g~-------------~~~~v~---~~~~~~~~~~-~~~v~l~nP~NP  136 (330)
T PRK05664         85 -----------APGRVGVLSPCYAEHAHAWRRAGH-------------QVRELD---EAEVEAALDS-LDVLVVVNPNNP  136 (330)
T ss_pred             -----------CCCEEEEcCCChHHHHHHHHHcCC-------------eEEEec---hhhHhhhhcC-CCEEEEeCCcCC
Confidence                       588999999999887654433221             222233   3456666643 335677888644


Q ss_pred             CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCcccccccccHHHHhhc
Q 013008          258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAI  336 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~  336 (451)
                       +|. ..+.+.+++|.++|+++|++||+||+|.++............+-..-+.+|||++| .|+|+||+++++++++.+
T Consensus       137 -TG~-~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~  214 (330)
T PRK05664        137 -TGR-RFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRAL  214 (330)
T ss_pred             -CCC-ccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcceEEEEeCHHHHHHH
Confidence             443 57899999999999999999999999977632111111111111223448999998 799999999999999888


Q ss_pred             cCCCccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCCCcceecccceeEEEEecCChHHHHHHHHH
Q 013008          337 NYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLAS----------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRD  405 (451)
Q Consensus       337 ~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~  405 (451)
                      ...  ..+++.+.+++.++.++|+.... +...+.          .++++. +....+.+.++++.+. +..++.+.|.+
T Consensus       215 ~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~~~~~f~~~~~~-~~~~~~~~l~~  290 (330)
T PRK05664        215 AEL--LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHG-LTPAGGCALFQWVRTE-DAAALHEFLAR  290 (330)
T ss_pred             HHh--cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCcceEEEEecC-CHHHHHHHHHH
Confidence            643  23456678888888888863210 111111          222332 1111222356666653 57789999999


Q ss_pred             CCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          406 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       406 ~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +||.+...+..+.+|+++.  .++++++++++.|++..++
T Consensus       291 ~gi~v~~f~~~~~iRis~~--~~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        291 RGILTRLFEQPASLRFGLP--ADEADWARLDQALLAYRKE  328 (330)
T ss_pred             CCeEEEECCCCCeEEEECC--CCHHHHHHHHHHHHHHHhh
Confidence            9999987654478898655  3678888888888766554

>PRK09105 putative aminotransferase; Provisional

Probab=99.92  E-value=6.4e-23  Score=204.02  Aligned_cols=304  Identities=17%  Similarity=0.145  Sum_probs=202.2

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a  175 (451)
                      +.++++..|..  .++ .+|.+.+++.+.+.....    |+.....+|.+.+++.++  .++|++++|+++++..+++..
T Consensus        43 ~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~----Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l  115 (370)
T PRK09105         43 EGAVFLNANEC--PLG-PSPAARDAAARSAALSGR----YDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF  115 (370)
T ss_pred             CCcEEecCCCC--CCC-CCHHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH
Confidence            45677766643  354 678999999887654322    333336788888888876  789999999999999999866


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI  255 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~  255 (451)
                      .           +++|+|++.+|+|.++...+...+. ....   .+..++..    .|++++++.. ++....++++|.
T Consensus       116 ~-----------~~gd~Vli~~P~y~~~~~~~~~~g~-~~~~---v~~~~~~~----~d~~~l~~~~-~~~~~v~l~nP~  175 (370)
T PRK09105        116 T-----------SPTAGLVTADPTYEAGWRAADAQGA-PVAK---VPLRADGA----HDVKAMLAAD-PNAGLIYICNPN  175 (370)
T ss_pred             c-----------CCCCEEEEeCCChHHHHHHHHHcCC-eEEE---ecCCCCCC----CCHHHHHhcC-CCCCEEEEeCCC
Confidence            4           1688999999999887654433322 1111   11111111    2778887763 333445556664


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcce---eeeccccc-CCcccccccccHH
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI---MTLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi---~t~sK~lg-~G~~iG~v~~~~~  331 (451)
                       +++|. ..+.+.++++.+.|+ +|+++|+||+|..|+. +. ......+..+++   .+|||.+| .|+|+||++++++
T Consensus       176 -NPTG~-~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~-~~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~  250 (370)
T PRK09105        176 -NPTGT-VTPRADIEWLLANKP-AGSVLLVDEAYIHFSD-AP-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPD  250 (370)
T ss_pred             -CCCCc-CcCHHHHHHHHHhCC-CCcEEEEECchHHhcc-Cc-chHHHHhhCCCEEEEecccHhhcCCccceeeeecCHH
Confidence             44454 578888999988764 5999999999977742 11 111111223443   37899998 6999999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCChH
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSAT  397 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~~~  397 (451)
                      +++.+...   ..++.+.+++.++.++|+   +++++++              .++.+. +...++.|.++++.+..+..
T Consensus       251 ~i~~l~~~---~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~~~f~~~~~~~~~~  323 (370)
T PRK09105        251 LLAKLARF---GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVREDTIAWLKKKG-YKCTPSQANCFMVDVKRPAK  323 (370)
T ss_pred             HHHHHHhc---CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHCC-CCcCCCCCcEEEEeCCCCHH
Confidence            99888643   334467777778777775   2333322              122232 33345667777776655677


Q ss_pred             HHHHHHHHCCceeeec--CCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          398 PVVDACRDSGLLVLTA--GKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       398 ~~~~~l~~~Gv~~~~~--~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ++++.|.++||.+...  +..+++|+++.   ++++++++++.|++++
T Consensus       324 ~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~  368 (370)
T PRK09105        324 AVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVM  368 (370)
T ss_pred             HHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            8999999999998422  11367899744   6788999999988765

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.92  E-value=5.7e-23  Score=206.42  Aligned_cols=320  Identities=16%  Similarity=0.063  Sum_probs=205.0

Q ss_pred             ecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhccC------C-CeEEecCCHH
Q 013008           94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF------A-DRVFFSNTGT  165 (451)
Q Consensus        94 d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~------~-e~v~~~~sG~  165 (451)
                      +..|+.++||..|..  .++ .++.+.+++.+.+.....+. ..+..+.+..+++++.+.++      . ++|++|+|++
T Consensus        24 ~~~~~~~i~l~~~~p--~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~  100 (393)
T TIGR03538        24 PPASKPPIALSIGEP--KHP-TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR  100 (393)
T ss_pred             hhcCCCeEEecCCCC--CCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence            346788899988875  344 57889999988765422211 11223346667777765532      4 3799999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCce--EEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATE--FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ  243 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~--ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  243 (451)
                      +|+..+++++..           +++.  |++.+|+|.++...+...+ .....   .+..++..+.  .|++++++.+.
T Consensus       101 ~al~~~~~~l~~-----------~gd~~~vlv~~P~y~~~~~~~~~~g-~~~~~---v~~~~~~~~~--~d~~~l~~~~~  163 (393)
T TIGR03538       101 EALFAFAQAVIN-----------PGQAPLVVMPNPFYQIYEGAALLAG-AEPYF---LNCTAENGFL--PDFDAVPESVW  163 (393)
T ss_pred             HHHHHHHHHHcC-----------CCCcceEEecCCCCcchHHHHHhcC-CeEEE---eeccccCCCC--CCHHHHHHHHh
Confidence            999999997652           4654  9999999988764432222 11111   1111110000  27888988875


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc--cccc----ccccC-----CCcceee
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWA----HEHYG-----IFPDIMT  312 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~----~~~~~-----~~pdi~t  312 (451)
                      + ++++|++...++++| .+++.+.+++|.++|++||++||+||+|..+...+  ....    ....+     ...-+.+
T Consensus       164 ~-~~k~i~l~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S  241 (393)
T TIGR03538       164 R-RCQLLFVCSPGNPTG-AVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHS  241 (393)
T ss_pred             h-cceEEEEeCCCCCcC-cccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEec
Confidence            4 445554443344445 46799999999999999999999999998764332  1111    11111     1122347


Q ss_pred             eccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCC-C
Q 013008          313 LAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARN-P  376 (451)
Q Consensus       313 ~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~-~  376 (451)
                      |||.++ .|+|+||+++++++++.+.......+++.+++.+.++.+++.   .+++.++              .++++ +
T Consensus       242 ~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~~~~~  318 (393)
T TIGR03538       242 LSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFAAVLEILGQVLD  318 (393)
T ss_pred             chhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            999876 689999999999998877543333345667888888777764   2222222              11121 1


Q ss_pred             CcceecccceeEEEEecCChHHHHHHHH-HCCceeeecCC-----------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          377 HVKDVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGK-----------GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       377 ~~~~v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~-----------~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      .  .....|+++|+.+..+..++++.|+ ++||.+.|+..           .+.+||++  +.+++++++++++|.+.
T Consensus       319 ~--~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~--~~~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       319 L--ELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIAL--VAPLEECVEAAERIRSF  392 (393)
T ss_pred             c--cCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEe--cCCHHHHHHHHHHHHHh
Confidence            1  1344588888887645677888886 57999987631           24677754  45799999999999864

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK08363 alanine aminotransferase; Validated

Probab=99.92  E-value=1.1e-22  Score=204.56  Aligned_cols=326  Identities=16%  Similarity=0.087  Sum_probs=205.4

Q ss_pred             CCCEEEeeccCcccc-cCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           96 EGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      +|..+||+..|.... .++ .+|.+.+++.+.+......+  ..+..+.++.+++++.+.++    .++|++|+|+++|+
T Consensus        28 ~~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al  106 (398)
T PRK08363         28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEAL  106 (398)
T ss_pred             cCCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence            467899999988742 344 57889999988876432111  11222234455555444333    67899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCe
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKT  247 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~  247 (451)
                      ..+++++.           .++|.|++.+|+|.++...+...+......   .+... +..    .|++.+++.+.++..
T Consensus       107 ~~~~~~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~---~~~~~~~~~----~d~~~l~~~~~~~~~  168 (398)
T PRK08363        107 QLIFGALL-----------DPGDEILIPGPSYPPYTGLVKFYGGVPVEY---RTIEEEGWQ----PDIDDIRKKITEKTK  168 (398)
T ss_pred             HHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHHcCCEEEEe---ccccccCCc----CCHHHHHhhCCcceE
Confidence            99998664           268999999999988765443333221110   01111 111    278899988865333


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCC---cceeeeccccc-CCccc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF---PDIMTLAKPLA-GGLPI  323 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~---pdi~t~sK~lg-~G~~i  323 (451)
                      .++++.| ++++|. ..+.+.+++|.++|++||+++|+||+|..+-..+.........-.   .-+.+|||.++ +|+|+
T Consensus       169 ~v~l~~p-~NPtG~-~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi  246 (398)
T PRK08363        169 AIAVINP-NNPTGA-LYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRL  246 (398)
T ss_pred             EEEEECC-CCCCCc-CcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceE
Confidence            4444445 444454 568999999999999999999999999876433322111111111   22348999976 68999


Q ss_pred             ccccc--cHHHHhhccCC---CccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc
Q 013008          324 GAALV--TEKVASAINYG---DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL  384 (451)
Q Consensus       324 G~v~~--~~~i~~~~~~~---~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~  384 (451)
                      ||+++  ++++++.+...   ....+++.+.+++.++.++|+.  .++++++              .++.++.+....+.
T Consensus       247 G~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~  324 (398)
T PRK08363        247 GYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQ  324 (398)
T ss_pred             EEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCC
Confidence            99987  66655554321   1122466788888888888752  2222222              23444444333444


Q ss_pred             c-eeEEEEecC----ChHHHHHH-HHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          385 G-LIIGIEFDV----SATPVVDA-CRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       385 G-~~~~~~~~~----~~~~~~~~-l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      | +++|+.++.    ...+++.. |.++||.+.|+..     .+++|++.  ..+++++++++++|.+++.+.
T Consensus       325 g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~~~~~  395 (398)
T PRK08363        325 GAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF--LPPVEILEEAMDRFEEFMRER  395 (398)
T ss_pred             eEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHh
Confidence            4 455556642    34556544 5688999988641     25788865  468999999999999988753

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.92  E-value=6.3e-23  Score=203.41  Aligned_cols=305  Identities=16%  Similarity=0.090  Sum_probs=199.9

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~  170 (451)
                      ++.+++|+.++...   ...+|.+.+++.+......+....+..+.+.++++++.+.++     .++|++|+|+++|+..
T Consensus        19 ~~~~~i~l~~~~p~---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~   95 (357)
T TIGR03539        19 HPDGIVDLSVGTPV---DPVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW   95 (357)
T ss_pred             CCCCeEEccCCCCC---CCCCHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH
Confidence            45578899887642   235688888887765433222222233446777777766533     5899999999999998


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++++.  .        .++|.|++.+|+|.++....... +.              ..+..+|++.+    ...++++|
T Consensus        96 ~~~~l~--~--------~~gd~Vl~~~p~y~~~~~~~~~~-g~--------------~~~~v~~~~~l----~~~~~~~v  146 (357)
T TIGR03539        96 LPTLLG--L--------GPGDTVVIPELAYPTYEVGALLA-GA--------------TPVAADDPTEL----DPVGPDLI  146 (357)
T ss_pred             HHHHHc--C--------CCCCEEEECCCCcHHHHHHHHhc-CC--------------EEeccCChhhc----CccCccEE
Confidence            877542  1        16899999999998775443221 11              11222344433    22356777


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccc------cCCCcceeeeccccc-CCcc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEH------YGIFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~------~~~~pdi~t~sK~lg-~G~~  322 (451)
                      +++..++++|. +.+.+.+++|.++|++||+++|+||+|..|.+.+.... ...      .....-+.+|||.++ +|+|
T Consensus       147 ~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R  225 (357)
T TIGR03539       147 WLNSPGNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYR  225 (357)
T ss_pred             EEeCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCcee
Confidence            77665556664 67899999999999999999999999987755443211 110      011122337999996 6899


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-ccee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~  387 (451)
                      +||+++++++++.+........++.+.+++.++.++|+.   +.+.++              .+++.+ +....+ .|++
T Consensus       226 ~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~L~~~g-~~~~~p~~~~~  301 (357)
T TIGR03539       226 AGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGD---DGHVAEQKARYAARRAQLKPALEKAG-FRIDHSEAGLY  301 (357)
T ss_pred             EEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCccEE
Confidence            999999999988875433334566788888888777742   222211              222332 222223 3567


Q ss_pred             EEEEecCChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          388 IGIEFDVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       388 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                      +|+.+.....++.+.|.++||.+.|+..     .+++|+++.  .+++++++++++|
T Consensus       302 ~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~--~~~~~i~~~~~~l  356 (357)
T TIGR03539       302 LWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALT--ATDERIAAAVARL  356 (357)
T ss_pred             EEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEec--CCHHHHHHHHHhh
Confidence            7776654667788899999999988631     267888665  4789999999876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=5.5e-23  Score=205.31  Aligned_cols=306  Identities=15%  Similarity=0.175  Sum_probs=199.3

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~  173 (451)
                      .+..+|||..|..  ++| .+|.+.+++.+. ...    ..++.....+|.++++++++  .++|++++|+++++..+++
T Consensus        50 ~~~~~i~l~~n~~--p~~-~~~~v~~a~~~~-~~~----~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~  121 (380)
T PLN03026         50 KPEDIVKLDANEN--PYG-PPPEVLEALGNM-KFP----YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMR  121 (380)
T ss_pred             CccceEEccCCCC--CCC-CCHHHHHHHHhh-Hhh----ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHH
Confidence            3568899988754  454 668888887652 211    11233335678888888886  6789999999999999888


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                      +..           +++++|++.+|+|+.+....... |.....   .+...+..    .|+++|++.+...++++|++.
T Consensus       122 ~~~-----------~~gd~Vlv~~P~y~~y~~~~~~~-g~~~~~---v~~~~~~~----~d~~~l~~~~~~~~~~~v~l~  182 (380)
T PLN03026        122 CVL-----------DPGDKIIDCPPTFGMYVFDAAVN-GAEVIK---VPRTPDFS----LDVPRIVEAVETHKPKLLFLT  182 (380)
T ss_pred             Hhc-----------CCCCEEEEcCCChHHHHHHHHHc-CCEEEE---eecCCCCC----cCHHHHHHHHhccCCcEEEEe
Confidence            654           16889999999997654333222 211111   11111111    278999998843345666655


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCCCcceeeeccccc-CCcccccccccHH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      ..++++|... +.+.+++|.+.   . +++|+||+|..|...+.... .+.++...-+-+|||.+| .|+|+||++++++
T Consensus       183 ~P~NPTG~~~-~~~~l~~l~~~---~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~  257 (380)
T PLN03026        183 SPNNPDGSII-SDDDLLKILEL---P-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLS  257 (380)
T ss_pred             CCCCCCCCCC-CHHHHHHHHhc---C-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHH
Confidence            5566666654 55555555443   3 89999999988743332111 111111222348999999 7999999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec--CC
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD--VS  395 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~--~~  395 (451)
                      +++.+....  ..++.+.+++.++.++|+.   .+++++              .++.++.+...+..|.++++.+.  .+
T Consensus       258 ~i~~l~~~~--~~~~~~~~~q~aa~~aL~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~~~~~~  332 (380)
T PLN03026        258 IIEYLWRAK--QPYNVSVAAEVAACAALSN---PKYLEDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRVTSGRD  332 (380)
T ss_pred             HHHHHHHhc--CCCCCCHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEECCCCCC
Confidence            998875432  2466788888888888852   222222              23344433334566888888874  35


Q ss_pred             hHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      ..++++.|+++||.+.++..   .+++||++.   +.++++++++.|++
T Consensus       333 ~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~  378 (380)
T PLN03026        333 AKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQ  378 (380)
T ss_pred             HHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHH
Confidence            77899999999999987632   367898644   67788888888865

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.92  E-value=1e-22  Score=205.16  Aligned_cols=326  Identities=14%  Similarity=0.113  Sum_probs=206.0

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhc-c--cccCCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL-T--HVSNMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~--~~~~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA  167 (451)
                      .|..++||..+...   +..++.+.+++.+.+... .  +....+....+..+++++.+.++    .+ +|++|+|+++|
T Consensus        31 ~~~~~~~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a  107 (403)
T PRK08636         31 AGEDIIDFSMGNPD---GPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG  107 (403)
T ss_pred             cCCCEEEcCCcCCC---CCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence            45678898887542   334566777777665432 1  11111222346677777765544    45 79999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH----HHHHhcC
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE----ATRKLIQ  243 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~le~~l~  243 (451)
                      +..++++..           +++|.|++.+|+|.++.......+.... ..+. ....+.. +   |++    .++++++
T Consensus       108 l~~~~~~l~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~-~v~~-~~~~~~~-~---d~~~l~~~l~~~~~  170 (403)
T PRK08636        108 YVHLVQAIT-----------NPGDVAIVPDPAYPIHSQAFILAGGNVH-KMPL-EYNEDFE-L---DEDQFFENLEKALR  170 (403)
T ss_pred             HHHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHhcCCEEE-EEec-cccccCc-c---ChhhhhhHHHHHHh
Confidence            999999665           2689999999999888655443332111 1000 0001100 1   333    5566665


Q ss_pred             C--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc----cccccc-CCCcceeeeccc
Q 013008          244 P--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEHY-GIFPDIMTLAKP  316 (451)
Q Consensus       244 ~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~~~-~~~pdi~t~sK~  316 (451)
                      .  .++.++++...++++| .+++.+.+++|.++|++|+++||+||+|..+-..+..    ...+.. ++...+.+|||.
T Consensus       171 ~~~~~~~~i~~~~P~NPTG-~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  249 (403)
T PRK08636        171 ESSPKPKYVVVNFPHNPTT-ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKS  249 (403)
T ss_pred             hccCCceEEEEeCCCCCCC-ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccc
Confidence            2  3455555553344444 4679999999999999999999999999877433321    111111 122233479999


Q ss_pred             cc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCccee
Q 013008          317 LA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDV  381 (451)
Q Consensus       317 lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v  381 (451)
                      ++ .|+|+||+++++++++.+........++.+++.+.++..+++.  .+.++++              .+++.. +...
T Consensus       250 ~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~  326 (403)
T PRK08636        250 YNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIESFANAG-WELQ  326 (403)
T ss_pred             cCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCC-Cccc
Confidence            97 7999999999999998876433223455566677776666542  2333322              122222 2222


Q ss_pred             -cccceeEEEEecC-----ChHHHHHHHH-HCCceeeecC---C--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          382 -RGLGLIIGIEFDV-----SATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       382 -~g~G~~~~~~~~~-----~~~~~~~~l~-~~Gv~~~~~~---~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                       ...|+++|+.++.     ...+++..++ ++||.+.|+.   .  .+++||+..  .+++++++++++|.++++..+
T Consensus       327 ~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~~~  402 (403)
T PRK08636        327 KPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKELE  402 (403)
T ss_pred             CCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhhc
Confidence             3468888888842     2567887766 6899999863   1  367898664  689999999999999987643

>PRK07550 hypothetical protein; Provisional

Probab=99.92  E-value=6.7e-23  Score=205.47  Aligned_cols=322  Identities=16%  Similarity=0.129  Sum_probs=208.4

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc-cc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      .|..++||.++...  +. .++.+.+++.+.+..... .+  ..+..+.+..+++++.+..+    .++|++|+|+++|+
T Consensus        27 ~~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al  103 (386)
T PRK07550         27 ADGPLIDLSQAVPG--YP-PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAF  103 (386)
T ss_pred             cCCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence            35668999988763  22 467888888887643111 11  11223335667777665543    68999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++++..           ++|+|++.+|+|.++....... +.....   .+..++....  .|+++++++++.+..+
T Consensus       104 ~~~~~~l~~-----------~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~~~~--~~~~~l~~~~~~~~~~  166 (386)
T PRK07550        104 WAAMVTLAG-----------AGDEVILPLPWYFNHKMWLDML-GIRPVY---LPCDEGPGLL--PDPAAAEALITPRTRA  166 (386)
T ss_pred             HHHHHHhcC-----------CCCEEEEcCCCCcchHHHHHhc-CCEEEE---EecCCCcCCC--CCHHHHHHHhcccCcE
Confidence            998887641           6899999999997775433222 211100   1111110000  2789999999764445


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cc-cccccC---CCcceeeeccccc-CCcc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LW-AHEHYG---IFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~-~~~~~~---~~pdi~t~sK~lg-~G~~  322 (451)
                      ++++.|. +++|. .++.+.+++|.++|++||+++|+||+|.+|...+. .. .....+   ....+.+|||.++ +|+|
T Consensus       167 v~~~~P~-NPtG~-~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R  244 (386)
T PRK07550        167 IALVTPN-NPTGV-VYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHR  244 (386)
T ss_pred             EEEeCCC-CCCCc-ccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccc
Confidence            5666665 44554 56899999999999999999999999987732221 11 111111   1233458999998 7999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeE
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLII  388 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~  388 (451)
                      +||+++++++++.+.......+.+.+.+++.++..+++.+  +++.++              .++.++.+......|.++
T Consensus       245 iG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~  322 (386)
T PRK07550        245 VGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNL--ADWRAGNRAEIARRRDAFRAVFARLPGWELLASGAYFA  322 (386)
T ss_pred             eEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHHHhCCCceeCCCceEEE
Confidence            9999999998887765444445566788888887777532  222211              223333222223446777


Q ss_pred             EEEec---CChHHHHHHHH-HCCceeeecC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          389 GIEFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       389 ~~~~~---~~~~~~~~~l~-~~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      |+.+.   .+..+++..|+ ++||.+.|+.     ..+.+|++++. .+++++++++++|.++
T Consensus       323 ~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        323 YVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             EecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            87763   35788998876 5799999863     13679998753 4789999999999764

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.92  E-value=9.3e-23  Score=201.69  Aligned_cols=316  Identities=16%  Similarity=0.093  Sum_probs=202.9

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAAI  172 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~al  172 (451)
                      +.+||.++..  .++ .+|++.+++++.......+... +....+..+++++.+..+    .+ +|++|+|+++|+..++
T Consensus         1 ~~~~~~~g~p--~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~   77 (350)
T TIGR03537         1 RLFDFGTGDP--KEP-TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP   77 (350)
T ss_pred             CeEeccCCCC--CCC-CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence            3578888865  344 4788999998876542211111 122335666666655544    55 8999999999999888


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      .++...    +    ++++.|++.+|+|.++...+...+.... .   .+..  .+..    -|++++++++.+ +++++
T Consensus        78 ~~~~~~----g----~~~d~Vl~~~p~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~----~d~~~l~~~~~~-~~~~i  140 (350)
T TIGR03537        78 LVFIDP----E----EDRRRVIFGTPGYPVYERGALFAGGEPT-A---VKLKKEDGFL----LRLEKVEKSILE-ETKIV  140 (350)
T ss_pred             HHHcCC----C----CCCceEEEcCCCCcchHHHHHhcCCEEE-E---cccCcccCCc----cCHHHHHHhhhh-ccEEE
Confidence            755410    0    0237999999999988766544332211 1   1111  1111    178999998865 45566


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccC--CCcceeeeccccc-CCccccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG--IFPDIMTLAKPLA-GGLPIGAAL  327 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~--~~pdi~t~sK~lg-~G~~iG~v~  327 (451)
                      ++.+.++++| ...+.+.+++|.++|++||+++|+||+|..+...+........+  ...-+.+|||.++ .|+|+||++
T Consensus       141 ~i~~p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~  219 (350)
T TIGR03537       141 WINYPHNPTG-ATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVA  219 (350)
T ss_pred             EEeCCCCCcC-cccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeee
Confidence            6655455555 46799999999999999999999999997652222221111111  1122337899997 589999999


Q ss_pred             ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ceeEEEEe
Q 013008          328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLIIGIEF  392 (451)
Q Consensus       328 ~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~~~~  392 (451)
                      +++++++.+.......+.+.+++.+.++.+++.   .+++.++              .++.+. +....+. |+++|+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~~g-~~~~~~~g~~~~~~~~  295 (350)
T TIGR03537       220 GDEKLISFLRKLRANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNKVG-LEYLYPDATFYLWVKV  295 (350)
T ss_pred             cCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCeEEEEEEEC
Confidence            999988887644333445556677777766664   2222222              122222 2223333 66678887


Q ss_pred             c--CChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          393 D--VSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       393 ~--~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      .  ....++++.|.++||.+.|+..     .+.+|++.  ..+++++++++++|++
T Consensus       296 ~~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~--~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       296 PSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVAL--VPTLEECEEALRLWER  349 (350)
T ss_pred             CCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHhc
Confidence            4  3578899999999999987531     36788865  4688999999998875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.92  E-value=9.8e-23  Score=204.75  Aligned_cols=319  Identities=13%  Similarity=0.101  Sum_probs=202.3

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccC--CCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~  168 (451)
                      |+.++||..+..   .+..++++.+++.+.+.... ..+.  .+....+.++++++.+.++    .+ .+++|+|+++|+
T Consensus        34 g~~~i~l~~g~p---~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al  110 (394)
T PRK05942         34 GLDLIDLGMGNP---DGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGL  110 (394)
T ss_pred             CCCeEEcCCCCC---CCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHH
Confidence            556789987754   33356678888777664321 1111  1122335666666655433    55 588999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++++.           +++|+|++.+|+|.++.......+. ....   .+...+..+  .-|++++++.+.+ +++
T Consensus       111 ~~~~~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~---v~~~~~~~~--~~d~~~l~~~~~~-~~k  172 (394)
T PRK05942        111 THLALAYV-----------NPGDVVLVPSPAYPAHFRGPLIAGA-QIYP---IILKPENDW--LIDLSSIPEEVAQ-QAK  172 (394)
T ss_pred             HHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHHcCC-EEEE---eecCCccCC--ccCHHHHHHhccc-cce
Confidence            99988654           2689999999999887544332221 1100   111111000  0278999888864 556


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cc---cc-ccCCCcceeeeccccc-CCcc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WA---HE-HYGIFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~---~~-~~~~~pdi~t~sK~lg-~G~~  322 (451)
                      +|++...++++| ..++.+.+++|.++|++||+++|+||+|..|...+.. ..   .. ..+....+.+|||.++ +|+|
T Consensus       173 ~i~l~~P~NPtG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlR  251 (394)
T PRK05942        173 ILYFNYPSNPTT-ATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWR  251 (394)
T ss_pred             EEEEcCCCCCCC-CcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhh
Confidence            666553344555 4679999999999999999999999999876443321 11   11 1122344568999997 6999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-ccee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~  387 (451)
                      +||+++++++++.+........++.+.+++.++.++|+..  +.+.++              .++.++ +....+ .|++
T Consensus       252 iG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~f  328 (394)
T PRK05942        252 VGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLP--DSYLQQVQERYRTRRDFLIQGLGELG-WNIPPTKATMY  328 (394)
T ss_pred             eeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeeE
Confidence            9999999999998865433345666778888888888632  222211              122222 222333 4567


Q ss_pred             EEEEec--CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          388 IGIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       388 ~~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      +|+.+.  .+..++..+++ ++||.+.|+..     .+++|++++  .+.+.+.+++++|.++
T Consensus       329 ~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~  389 (394)
T PRK05942        329 LWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLKQA  389 (394)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence            888874  34567777655 68999987531     368899764  4567777777777653

>PRK08912 hypothetical protein; Provisional

Probab=99.92  E-value=8.4e-23  Score=204.82  Aligned_cols=319  Identities=18%  Similarity=0.143  Sum_probs=205.0

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA  171 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~a  171 (451)
                      ..+||..|...  ++ .+|.+.+++.+.+......+.  .+....+..+++++.+.++    .+ +|++|+|+++|+..+
T Consensus        27 ~~i~l~~g~p~--~~-~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~  103 (387)
T PRK08912         27 GAINLGQGFPD--DP-GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAA  103 (387)
T ss_pred             CeEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHH
Confidence            56889888763  33 467888888877654211111  1122335666666655443    55 899999999999988


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF  251 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi  251 (451)
                      ++...           .+++.|++.+|+|.++.......+.... .   .+..+...   .-|++++++.+.++...+++
T Consensus       104 ~~~~~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~---~~~~~~l~~~~~~~~~~v~l  165 (387)
T PRK08912        104 LLALV-----------EPGDEVVLFQPLYDAYLPLIRRAGGVPR-L---VRLEPPHW---RLPRAALAAAFSPRTKAVLL  165 (387)
T ss_pred             HHHhc-----------CCCCEEEEeCCCchhhHHHHHHcCCEEE-E---EecCcccC---cCCHHHHHHHhCccceEEEE
Confidence            88654           1688999999999887654432221111 0   11111000   01789999988653334444


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-c-ccccCC---Ccceeeeccccc-CCccccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A-HEHYGI---FPDIMTLAKPLA-GGLPIGA  325 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~-~~~~~~---~pdi~t~sK~lg-~G~~iG~  325 (451)
                      +.| ++++| ...+.+.+++|.++|++|++++|+||+|..+-..+..+ . ....+.   ..-+.+|||.++ .|+|+||
T Consensus       166 ~~p-~NPtG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  243 (387)
T PRK08912        166 NNP-LNPAG-KVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGF  243 (387)
T ss_pred             eCC-CCCcC-cccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEE
Confidence            545 44445 45788999999999999999999999998764333211 1 111122   223347899999 7999999


Q ss_pred             ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ceeEEE
Q 013008          326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLIIGI  390 (451)
Q Consensus       326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~~  390 (451)
                      +++++++++.+.......+++.++..+.++.++|.  ..+++.++              .++.+. +....+. |+++|+
T Consensus       244 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~g~~~l~~  320 (387)
T PRK08912        244 VCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLG--KPDDYFEGMRADLARSRDRLAAGLRRIG-FPVLPSQGTYFLTV  320 (387)
T ss_pred             EecCHHHHHHHHHHHhhccccCChHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEe
Confidence            99999999887544333456677777777777774  22333222              222232 2223333 567777


Q ss_pred             Eec-----CChHHHHHHHH-HCCceeeecCC-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          391 EFD-----VSATPVVDACR-DSGLLVLTAGK-------GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       391 ~~~-----~~~~~~~~~l~-~~Gv~~~~~~~-------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .+.     .+..++++.|+ ++||.+.|+..       .+++|++..  .+++++++++++|.+++++
T Consensus       321 ~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        321 DLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARRR  386 (387)
T ss_pred             cccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence            773     24667898886 57999988531       257888655  5789999999999988763

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.92  E-value=4.1e-23  Score=203.97  Aligned_cols=304  Identities=21%  Similarity=0.251  Sum_probs=203.8

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a  175 (451)
                      .++|||.+|..  .++ .+|++++++.+++.....    +......++.+.++++++  .+++++++|+++++..+++.+
T Consensus        19 ~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~----y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l   91 (346)
T TIGR01141        19 KEVIKLNSNEN--PFG-PPPKAKEALRAEADKLHR----YPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF   91 (346)
T ss_pred             CceEEccCCCC--CCC-CCHHHHHHHHHhHHHhhc----CCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh
Confidence            47999998876  455 578999999988754322    122223678888888876  678999999999998888765


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI  255 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~  255 (451)
                      .           .++++|++.+|+|..+....... +.....   .+...+    ...|++.+++.+.+ ++++|+++..
T Consensus        92 ~-----------~~gd~v~~~~p~y~~~~~~~~~~-g~~~~~---~~~~~~----~~~d~~~l~~~~~~-~~~~v~l~~p  151 (346)
T TIGR01141        92 L-----------EPGDAVLVPPPTYSMYEISAKIH-GAEVVK---VPLDED----GQLDLEDILVAIDD-KPKLVFLCSP  151 (346)
T ss_pred             c-----------CCCCEEEEcCCCHHHHHHHHHHc-CCeEEE---eccCCC----CCCCHHHHHHhcCC-CCCEEEEeCC
Confidence            4           15789999999986543222211 211111   111111    01388999988754 4666666655


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee---eeccccc-CCcccccccccHH
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM---TLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      ++++|.. ++.+.++++++.|+ +|+++|+||+|.++...+...  ......++++   ++||.++ +|+|+||++++++
T Consensus       152 ~NptG~~-~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~  227 (346)
T TIGR01141       152 NNPTGNL-LSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAE  227 (346)
T ss_pred             CCCCCCC-CCHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchhhhceeeecCHH
Confidence            6666764 56666666666665 699999999998774322211  1111223433   7899996 5899999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCChH
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSAT  397 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~~~  397 (451)
                      +.+.+...  ..+++.+++++.++.++++..   ++.++              .+++++.+....+.|.++++++...+.
T Consensus       228 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~  302 (346)
T TIGR01141       228 IIDALNKV--RAPFNLSRLAQAAAIAALRDD---DFIEKTVEEINAERERLYDGLKKLPGLEVYPSDANFVLIRFPRDAD  302 (346)
T ss_pred             HHHHHHhc--cCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHHHhcCCCEECCCcCCEEEEecCCCHH
Confidence            99888643  235667888998888777532   11211              223344444345568888888754678


Q ss_pred             HHHHHHHHCCceeeecCC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          398 PVVDACRDSGLLVLTAGK----GNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       398 ~~~~~l~~~Gv~~~~~~~----~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      ++.+.|.++||.+.++..    .+.+|++++   ++++++++++.|+
T Consensus       303 ~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       303 ALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             HHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence            899999999999998642    367899754   7899999988763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK05839 hypothetical protein; Provisional

Probab=99.92  E-value=6e-23  Score=204.71  Aligned_cols=318  Identities=13%  Similarity=0.033  Sum_probs=202.1

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~  170 (451)
                      .|+.++||..|..+  ++ .++.+.+++.+.......++.. +....++.+++.+.+.++    .++|++|+|+++|+..
T Consensus        22 ~~~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~   98 (374)
T PRK05839         22 KEYKGLDLTIGEPQ--FE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN   98 (374)
T ss_pred             CCCCeEEcCCCCCC--CC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence            38899999998763  55 3678888888765442222111 223446677777777644    7899999999999988


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++++.. .        .+++.|++.+|+|..+.......+. ....   .+...+..+.  .|++..  .++  ++++|
T Consensus        99 ~~~~~~~-~--------~~gd~vlv~~P~y~~~~~~~~~~g~-~v~~---v~~~~~~~~~--~d~~~~--~~~--~~k~v  159 (374)
T PRK05839         99 FPQFVLF-D--------KQNPTIAYPNPFYQIYEGAAIASRA-KVLL---MPLTKENDFT--PSLNEK--ELQ--EVDLV  159 (374)
T ss_pred             HHHHHhc-C--------CCCCEEEECCCCchhhHHHHHhcCC-EEEE---eecccccCCc--CCcchh--hhc--cccEE
Confidence            8876531 0        1478899999999887655433221 1111   1111110000  022222  222  34454


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc-c--------ccCCCcceeeeccccc-CC
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-E--------HYGIFPDIMTLAKPLA-GG  320 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~--------~~~~~pdi~t~sK~lg-~G  320 (451)
                      ++...++++|. ..+.+.+++|.++|++||++||+||+|..|...+..... .        .++...-+.+|||.++ +|
T Consensus       160 ~i~nP~NPTG~-~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G  238 (374)
T PRK05839        160 ILNSPNNPTGR-TLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPG  238 (374)
T ss_pred             EEeCCCCCcCc-ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcc
Confidence            44433444454 578999999999999999999999999887322221111 1        0111222447999986 69


Q ss_pred             cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCCCCcceecccceeEE
Q 013008          321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARNPHVKDVRGLGLIIG  389 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~~~~~~v~g~G~~~~  389 (451)
                      +|+||+++++++++.+........++.+.+.+.++.+++.   .+++.++           +.+.++ +. ....|+++|
T Consensus       239 lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~-~~-~p~gg~fi~  313 (374)
T PRK05839        239 LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLAREILG-IT-IPPATFYVW  313 (374)
T ss_pred             ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHhcC-CC-CCCeeEEEE
Confidence            9999999999999887543333345567777877776663   2333322           112221 11 345588888


Q ss_pred             EEecCChHHHHHHHHH-CCceeeecCC-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          390 IEFDVSATPVVDACRD-SGLLVLTAGK-------GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       390 ~~~~~~~~~~~~~l~~-~Gv~~~~~~~-------~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.+. +..+++++|++ +||.+.|+..       .+++|++.  ..+++++.+++++|.++++
T Consensus       314 ~~~~-~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        314 LPVD-NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             EeCC-ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence            8875 45778889875 8999998521       26788865  4579999999999998874

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=6.9e-23  Score=203.13  Aligned_cols=312  Identities=18%  Similarity=0.147  Sum_probs=205.1

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--C-CeEEecCCHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A-DRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~-e~v~~~~sG~eA~~~al~  173 (451)
                      ++.++|+..|..  +++ .+|++++++.+.+.....  ..|+.....+|.+.++++++  . +.|++++|+++++..+++
T Consensus        25 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~   99 (356)
T PRK04870         25 ATGMVKLDAMEN--PYR-LPAELRAELGERLAEVAL--NRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL   99 (356)
T ss_pred             CCCceeCcCCCC--CCC-CCHHHHHHHHHHhhcccc--ccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence            467888877754  454 678999999988764221  11222235678888888876  2 479999999999999888


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                      ++.           ++++.|++.+|+|.++...+...+ .....   .+..++..    .|++++++.+...++++|++.
T Consensus       100 ~~~-----------~~gd~vlv~~P~y~~~~~~~~~~g-~~~~~---i~~~~~~~----~d~~~l~~~~~~~~~~~v~l~  160 (356)
T PRK04870        100 ACA-----------KPGATVLAPEPGFVMYRMSAKLAG-LEFVG---VPLTADFT----LDLPAMLAAIAEHRPALVFLA  160 (356)
T ss_pred             Hhc-----------CCCCEEEECCCCHHHHHHHHHHcC-CEEEE---ecCCCCCC----CCHHHHHHHhhcCCCCEEEEc
Confidence            664           268999999999987654433222 21111   11111111    278999999865456666555


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCcccccccccHHH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKV  332 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i  332 (451)
                      ..++++|. +++.+.+++|.++|   ++++|+||+|..|...........++...-+.+||| ++ .|+|+||+++++++
T Consensus       161 ~p~NPtG~-~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~  235 (356)
T PRK04870        161 YPNNPTGN-LFDDADVERIIEAA---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAW  235 (356)
T ss_pred             CCCCCCCC-CCCHHHHHHHHHHC---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHH
Confidence            44455554 56888888888888   789999999987743211101111222223447999 66 48999999999999


Q ss_pred             HhhccCCCccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCCCcceecccceeEEEEecCChHHHHH
Q 013008          333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLAS----------KLARNPHVKDVRGLGLIIGIEFDVSATPVVD  401 (451)
Q Consensus       333 ~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~~  401 (451)
                      ++.+....  ..++.+.+++.++..+++..+. ++..++          .+++++.+...+..|.++++.++ ...++.+
T Consensus       236 i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  312 (356)
T PRK04870        236 IAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTVFPSAANFILVRVP-DAAAVFD  312 (356)
T ss_pred             HHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEECC-CHHHHHH
Confidence            98876432  3456778888887777752110 011111          23445444444566788888875 5678889


Q ss_pred             HHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          402 ACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       402 ~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .|.++||.+.++..     .+.+|+++.   +.+++++++++|++++
T Consensus       313 ~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~  356 (356)
T PRK04870        313 GLKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAAL  356 (356)
T ss_pred             HHHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence            99999999987631     357888654   7888999999988753

>PRK07683 aminotransferase A; Validated

Probab=99.92  E-value=1.7e-22  Score=202.40  Aligned_cols=319  Identities=17%  Similarity=0.093  Sum_probs=203.6

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~  170 (451)
                      ..++||..+.+.  ++ .++.+.+++.+.++.....+  ..+....+.++++++.+..+    .+ +|++|+|+++|+..
T Consensus        28 ~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~  104 (387)
T PRK07683         28 DNLISLTIGQPD--FP-TPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI  104 (387)
T ss_pred             CCeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence            457888887642  32 46788999999887532211  12223335566666654433    55 89999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      +++.+.           .+++.|++.+|+|+++.......+....    +.+... +..    -|.+.+++.+.+. +++
T Consensus       105 ~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~----~~~~~l~~~~~~~-~~~  164 (387)
T PRK07683        105 AFRTIL-----------EPGTEVILPAPIYPGYEPIIRLCGAKPV----FIDTRSTGFR----LTAEALENAITEK-TRC  164 (387)
T ss_pred             HHHHhC-----------CCCCEEEEcCCCccchHHHHHHcCCEEE----EeecCcccCC----CCHHHHHHhcCcC-ceE
Confidence            988654           1588999999999987655433322111    011111 111    1678898888653 444


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc-CC---Ccceeeeccccc-CCcccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY-GI---FPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~---~pdi~t~sK~lg-~G~~iG  324 (451)
                      +++...++++|. .++.+.+++|.++|+++|+++|+||+|..+...+.......+ +.   ..-+.+|||.++ .|+|+|
T Consensus       165 i~i~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG  243 (387)
T PRK07683        165 VVLPYPSNPTGV-TLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIG  243 (387)
T ss_pred             EEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeE
Confidence            554434445554 579999999999999999999999999877433322111111 21   222447999999 799999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ceeEE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLIIG  389 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~  389 (451)
                      |+++++++++.+.........+.+.+++.++.+.|+..  +.+.++              .++... +....+. |+++|
T Consensus       244 ~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~  320 (387)
T PRK07683        244 FLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAG--KDDAKMMRHQYKKRRDYVYNRLISMG-LDVEKPTGAFYLF  320 (387)
T ss_pred             EEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCCCeeEEEE
Confidence            99999998888754322223345677888888777531  122211              222222 2223343 55666


Q ss_pred             EEec---CChHHHHHHH-HHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          390 IEFD---VSATPVVDAC-RDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       390 ~~~~---~~~~~~~~~l-~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..+.   ....+++..+ .++||.+.|+..     .+.+||+..  .+++++.+++++|.+++++
T Consensus       321 ~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~--~~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        321 PSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA--YSIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             EecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            6553   2455677665 567999988631     367888654  5899999999999998865

>PRK07337 aminotransferase; Validated

Probab=99.92  E-value=1.6e-22  Score=202.81  Aligned_cols=321  Identities=15%  Similarity=0.129  Sum_probs=206.3

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~  170 (451)
                      |..++||..+...  ++ .+|.+.+++.+.+......+.  .+....+..+++++.+.++    .+++++|+|+++|+..
T Consensus        29 ~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~  105 (388)
T PRK07337         29 GRDIIHMGIGEPD--FT-APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLL  105 (388)
T ss_pred             CCCEEEeCCcCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHH
Confidence            3456788777652  32 468889999887754221111  1122335566666654433    6789999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      ++.+..           .++|.|++.+|+|.+........+.... .   .+......+  --|++++++.+.++...++
T Consensus       106 ~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~~--~~~~~~l~~~~~~~~~~v~  168 (388)
T PRK07337        106 ACLALV-----------ERGDEVLMPDPSYPCNRHFVAAAEGRPV-L---VPSGPAERF--QLTAADVEAAWGERTRGVL  168 (388)
T ss_pred             HHHHhc-----------CCCCEEEEeCCCchhhHHHHHHcCCEEE-E---eecCCccCC--cCCHHHHHhhcCccceEEE
Confidence            888654           1689999999999877544332222111 1   111111000  0278999998876455556


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcce---eeeccccc-CCcccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI---MTLAKPLA-GGLPIGAA  326 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi---~t~sK~lg-~G~~iG~v  326 (451)
                      ++.|.+ ++| ...+.+.+++|.++|++||+++|+||+|.++...+.....  ....+++   .+|||.++ .|+|+||+
T Consensus       169 l~~p~N-PtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~~G~RiG~~  244 (388)
T PRK07337        169 LASPSN-PTG-TSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA--LSLGDDVITINSFSKYFNMTGWRLGWL  244 (388)
T ss_pred             EECCCC-CCC-cCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh--hhccCCEEEEEechhhcCCchhheeee
Confidence            666654 444 4678999999999999999999999999887554431111  1223444   37899997 69999999


Q ss_pred             cccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHH-------HHH------HHhCCCCcc-eecccceeEEEEe
Q 013008          327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF-------LAS------KLARNPHVK-DVRGLGLIIGIEF  392 (451)
Q Consensus       327 ~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~-------~~~------~~~~~~~~~-~v~g~G~~~~~~~  392 (451)
                      ++++++++.+.........+.+++++.++.++++.-....+       .++      .++.++... ..+..|+++|+++
T Consensus       245 ~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~  324 (388)
T PRK07337        245 VVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADC  324 (388)
T ss_pred             ecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEec
Confidence            99999888876433333445678888888777752100111       111      223333211 1234578899988


Q ss_pred             c-------CChHHHHHHHH-HCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          393 D-------VSATPVVDACR-DSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       393 ~-------~~~~~~~~~l~-~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .       .+..+++..++ ++||.+.|+..      .+++|++..  .+++++++++++|.+++
T Consensus       325 ~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        325 RGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEEAVARLGKLF  387 (388)
T ss_pred             ccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence            4       24567887765 68999987531      257888665  47999999999998765

>PRK09082 methionine aminotransferase; Validated

Probab=99.92  E-value=2.5e-22  Score=201.28  Aligned_cols=316  Identities=17%  Similarity=0.148  Sum_probs=206.9

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~  170 (451)
                      +.++||..|...  ++ .+|.+.+++.+.++.....+  ..+....+.++++++.+.++    .+ .+++|+|+++|+..
T Consensus        30 ~~~i~l~~g~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~  106 (386)
T PRK09082         30 HGAINLSQGFPD--FD-GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA  106 (386)
T ss_pred             CCEEEecCCCCC--CC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence            356888887652  33 47889999988776432211  11223346778888777655    23 79999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++...           .++|+|++.+|+|.++....... +.....   .+..... +  ..|++++++.+.+ ++++|
T Consensus       107 ~~~~~~-----------~~gd~Vli~~p~y~~~~~~~~~~-g~~~~~---~~~~~~~-~--~~d~~~l~~~~~~-~~~~v  167 (386)
T PRK09082        107 AILALV-----------RPGDEVIVFDPSYDSYAPAIELA-GGRAVR---VALQPPD-F--RVDWQRFAAAISP-RTRLI  167 (386)
T ss_pred             HHHHHc-----------CCCCEEEEeCCCchhhHHHHHHc-CCEEEE---EecCccc-c--cCCHHHHHHhcCc-cceEE
Confidence            998654           26899999999998765443322 211111   1111100 0  0278999999875 45566


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-c-cccccCCC---cceeeeccccc-CCcccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-W-AHEHYGIF---PDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~-~~~~~~~~---pdi~t~sK~lg-~G~~iG  324 (451)
                      ++...++++|. .++.+.+++|.++|++||+++|+||+|..+-..+.. . .....+..   .-+.+|||.++ .|+|+|
T Consensus       168 ~l~~p~NPtG~-~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  246 (386)
T PRK09082        168 ILNTPHNPSGT-VWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVG  246 (386)
T ss_pred             EEeCCCCCCCc-CCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhh
Confidence            66554555564 568899999999999999999999999876433321 1 11122222   22347999997 699999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cceeEE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLIIG  389 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~~~  389 (451)
                      |+++++++++.+........++.+.+++.++.+.++.  .+.+.++              .+++. .+...+. .|+++|
T Consensus       247 ~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~g~~~~~  323 (386)
T PRK09082        247 YCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDRFRAALANS-RFKLLPCEGTYFQL  323 (386)
T ss_pred             hhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCeeEEEE
Confidence            9999999998876544445667788888887777652  2332222              22222 2222233 356777


Q ss_pred             EEec----CChHHHHHHHH-HCCceeeecCC-------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          390 IEFD----VSATPVVDACR-DSGLLVLTAGK-------GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       390 ~~~~----~~~~~~~~~l~-~~Gv~~~~~~~-------~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      +.+.    .+..++++.|+ ++||.+.|+..       .+++|++.+  .+++++++++++|.+
T Consensus       324 ~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~  385 (386)
T PRK09082        324 VDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA--KQEETLDAAAERLCQ  385 (386)
T ss_pred             EeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence            7763    24678888875 67999988631       257888654  589999999999875

>PRK07777 aminotransferase; Validated

Probab=99.92  E-value=1.5e-22  Score=203.04  Aligned_cols=318  Identities=19%  Similarity=0.169  Sum_probs=202.7

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA  171 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~a  171 (451)
                      .++||..|.....   .++.+.+++.+.+......+.  .+....+..+++++.+.++    .+ +|++|+||++|+..+
T Consensus        25 ~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~  101 (387)
T PRK07777         25 GAVNLGQGFPDED---GPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAA  101 (387)
T ss_pred             CeEEccCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHH
Confidence            5688888875332   356778887777654221111  1122235556665555554    33 699999999999998


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +....           .++|+|++.+|+|+++....... +.....   .+..+. ..+.  .|+++|++.+.+ ++.+|
T Consensus       102 ~~~~~-----------~~gd~vli~~p~y~~~~~~~~~~-g~~~~~---~~~~~~~~~~~--~d~~~l~~~~~~-~~~~v  163 (387)
T PRK07777        102 VLGLV-----------EPGDEVLLIEPYYDSYAAVIAMA-GAHRVP---VPLVPDGRGFA--LDLDALRAAVTP-RTRAL  163 (387)
T ss_pred             HHHhc-----------CCCCEEEEeCCCchhhHHHHHHC-CCEEEE---eecCCccCCCc--CCHHHHHHhcCc-ccEEE
Confidence            87543           15889999999998875333222 211111   111111 0000  278999998865 45666


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc-C---CCcceeeeccccc-CCcccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY-G---IFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~-~---~~pdi~t~sK~lg-~G~~iG  324 (451)
                      ++++.++++|. .++.+.+++|.++|++|++++|+||+|.++...+.. .....+ +   ...-+.+|||.++ .|+|+|
T Consensus       164 ~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG  242 (387)
T PRK07777        164 IVNSPHNPTGT-VLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIG  242 (387)
T ss_pred             EEcCCCCCCCc-cCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeE
Confidence            66665666665 568999999999999999999999999877443321 111111 1   1222447999998 699999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cceeEE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLIIG  389 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~~~  389 (451)
                      |+++++++++.+.......+++.+++.+.++..+++.  .+.+.++              .++.+. +....+ .|+++|
T Consensus       243 ~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~  319 (387)
T PRK07777        243 WACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDH--EDAWVAALRDSLQAKRDRLAAGLAEAG-FEVHDSAGTYFLC  319 (387)
T ss_pred             EEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHhCC-CCccCCCcceEEE
Confidence            9999999888776444444566666667666666652  2233222              222222 222233 355677


Q ss_pred             EEec----CChHHHHHHHH-HCCceeeecCC--------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          390 IEFD----VSATPVVDACR-DSGLLVLTAGK--------GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       390 ~~~~----~~~~~~~~~l~-~~Gv~~~~~~~--------~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.+.    .++.++++.|+ ++||.+.|+..        .+.+|++.  ..+++++++++++|.++.
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~~~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        320 ADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--CKRDDTLDEAIRRLRALR  384 (387)
T ss_pred             ecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--cCCHHHHHHHHHHHHHHh
Confidence            6753    25678999997 57999987631        24688865  458999999999998765

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=1.5e-22  Score=200.31  Aligned_cols=308  Identities=17%  Similarity=0.146  Sum_probs=201.6

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARK  177 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~  177 (451)
                      .+||..|..  .++ .+|.+.+++.+.+.....  ..+......+|.+.++++++  .++|++++|+++|+..+++++. 
T Consensus        24 ~~~l~~~~~--~~~-~p~~~~~a~~~~~~~~~~--~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~-   97 (351)
T PRK14807         24 KYKMDANET--PFE-LPEEVIKNIQEIVKSSQV--NIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI-   97 (351)
T ss_pred             eeEccCCCC--CCC-CCHHHHHHHHHHhhcCcc--cCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc-
Confidence            466766654  454 578899999887753211  22333335778888888876  6799999999999999888654 


Q ss_pred             HhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccC
Q 013008          178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG  257 (451)
Q Consensus       178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~  257 (451)
                                +++|+|++.+|+|.++....... |.....   .+...+..    -|++++++.+...++++|++...++
T Consensus        98 ----------~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~~----~d~~~l~~~~~~~~~k~v~l~~p~N  159 (351)
T PRK14807         98 ----------NKGDVVIYPHPSFAMYSVYSKIA-GAVEIP---VKLKEDYT----YDVGSFIKVIEKYQPKLVFLCNPNN  159 (351)
T ss_pred             ----------CCCCEEEEeCCChHHHHHHHHHc-CCeEEE---eecCCCCC----CCHHHHHHHhhccCCCEEEEeCCCC
Confidence                      26899999999998665432222 221111   11111111    2789999998754566666655566


Q ss_pred             CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc--cccccCCCcceeeeccccc-CCcccccccccHHHHh
Q 013008          258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS  334 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~  334 (451)
                      ++|...+    .+++.++|++++.++|+||+|.+|.  +...  .....+...-+.+|||.++ .|+|+||+++++++++
T Consensus       160 PtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~  233 (351)
T PRK14807        160 PTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILK  233 (351)
T ss_pred             CCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHH
Confidence            6676554    5666777778888999999997762  3211  1111222233447999998 7999999999999998


Q ss_pred             hccCCCccCCCCCcHHHHHHHHHHHHHhcChH----HHHH------HHhCCCCcceecccceeEEEEecCChHHHHHHHH
Q 013008          335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPA----FLAS------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACR  404 (451)
Q Consensus       335 ~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~----~~~~------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~  404 (451)
                      .+....  ..++.+++++.++.++|+.-.-++    +.++      .+++.+.+...++.|.++|+.+. +..++++.|.
T Consensus       234 ~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~i~~~-~~~~~~~~l~  310 (351)
T PRK14807        234 YLNLVK--SPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIKVYPSKTNFILVKFK-DADYVYQGLL  310 (351)
T ss_pred             HHHHcc--CCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECcCCccEEEEEcC-CHHHHHHHHH
Confidence            886432  235567888888888775311011    1111      22334444445566888888774 4678899999


Q ss_pred             HCCceeeecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          405 DSGLLVLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       405 ~~Gv~~~~~~~----~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ++||.+.+...    .+.+|+++.   +.++.+++++.|++++
T Consensus       311 ~~gV~v~~~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        311 ERGILVRDFSKVEGLEGALRITVS---SCEANDYLINGLKELL  350 (351)
T ss_pred             HCCEEEEECCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence            99999977531    357888644   5778888888887653

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=9.5e-23  Score=201.95  Aligned_cols=308  Identities=15%  Similarity=0.157  Sum_probs=199.3

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~  174 (451)
                      ++.+|||..|..  .++ .+|.+.+++.+.+.+...   .|+.....+|.+.++++++  .++|++|+|+++|+..++++
T Consensus        23 ~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~---~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~   96 (353)
T PRK05387         23 LAKLIKLNTNEN--PYP-PSPKVLEAIRAALGDDLR---LYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLA   96 (353)
T ss_pred             ccceeeccCCCC--CCC-CCHHHHHHHHHHhhhhhh---cCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHH
Confidence            357899998876  354 478899999887764211   1222234678888888775  77999999999999999997


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP  254 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep  254 (451)
                      +.           +++|.|++.+|+|..+....... |.....   .+...+..    -|++++++.    ....+++.|
T Consensus        97 l~-----------~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~---v~~~~~~~----~d~~~l~~~----~~~v~~~~P  153 (353)
T PRK05387         97 FF-----------NHDRPLLFPDITYSFYPVYAGLY-GIPYEE---IPLDDDFS----IDVEDYLRP----NGGIIFPNP  153 (353)
T ss_pred             hc-----------CCCCEEEEeCCCHHHHHHHHHHc-CCEEEE---eecCCCCC----CCHHHHHhc----CCEEEEeCC
Confidence            65           26899999999996655332222 211111   11111111    167777632    234566666


Q ss_pred             ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCcccccccccHHHH
Q 013008          255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVA  333 (451)
Q Consensus       255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~  333 (451)
                      . +++|. ..+.+.+++|.+.|+  ++++|+||+|..|+........+..+...-+.+|||.++ .|+|+||++++++++
T Consensus       154 ~-NPtG~-~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~  229 (353)
T PRK05387        154 N-APTGI-ALPLAEIERILAANP--DSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELI  229 (353)
T ss_pred             C-CCCCC-CCCHHHHHHHHHhCC--CcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHH
Confidence            4 44454 456666776666543  999999999987742111111111221222347999998 799999999999998


Q ss_pred             hhccCCCc-cCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec-CChH
Q 013008          334 SAINYGDH-GSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD-VSAT  397 (451)
Q Consensus       334 ~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~-~~~~  397 (451)
                      +.+..... ..+++.+.+++.++.++|+   ..++.++              .++.++ +...+..|.++++.++ .+..
T Consensus       230 ~~l~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~  305 (353)
T PRK05387        230 EALNRVKNSFNSYPLDRLAQAGAIAAIE---DEAYFEETRAKVIATRERLVEELEALG-FEVLPSKANFVFARHPSHDAA  305 (353)
T ss_pred             HHHHHhhccCCCCCcCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCC-CeECCCcCcEEEEECCCCCHH
Confidence            88764322 2356678888888887775   2222221              223332 2223445677777764 4677


Q ss_pred             HHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          398 PVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       398 ~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ++++.|.++||.+.+.+.   .+.+|+++.   +++++++++++|++++.
T Consensus       306 ~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        306 ELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             HHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            899999999999876532   357888654   67999999999998764

>PRK08175 aminotransferase; Validated

Probab=99.91  E-value=3.8e-22  Score=200.54  Aligned_cols=321  Identities=13%  Similarity=0.092  Sum_probs=207.4

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~  168 (451)
                      |.+++||..+..   .+..+|.+.+++.+.+.... ..+  ..+..+.+..+++.+.+.++    .+ ++++|+|+++++
T Consensus        28 ~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l  104 (395)
T PRK08175         28 GEDIIDFSMGNP---DGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL  104 (395)
T ss_pred             CCCeEEcCCCCC---CCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence            567788887754   33456778888877664321 111  11122335666666655433    45 799999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC--CC
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GK  246 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~  246 (451)
                      ..+++.+.           +++++|++.+|+|..+.......+ .....   .+...+     ..+.++++++++.  .+
T Consensus       105 ~~~~~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~~g-~~~~~---v~~~~~-----~~~~~~l~~~l~~~~~~  164 (395)
T PRK08175        105 AHLMLATL-----------DHGDTVLVPNPSYPIHIYGAVIAG-AQVRS---VPLVEG-----VDFFNELERAIRESYPK  164 (395)
T ss_pred             HHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHHcC-CeEEE---EecccC-----CCcHHHHHHHHhhccCC
Confidence            98877554           268999999999987654443222 11100   011111     0146788888762  35


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cc-cc---cCCCcceeeeccccc-CC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-EH---YGIFPDIMTLAKPLA-GG  320 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~---~~~~pdi~t~sK~lg-~G  320 (451)
                      +++|++...++++| ..++.+.+++|.++|++||+++|+||+|.++-..+... .. ..   .+...-+.+|||.+| .|
T Consensus       165 ~~~v~i~~p~NPtG-~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pG  243 (395)
T PRK08175        165 PKMMILGFPSNPTA-QCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAG  243 (395)
T ss_pred             ceEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcc
Confidence            66777664444555 46799999999999999999999999998764333211 11 11   122223458999997 69


Q ss_pred             cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCccee-cccc
Q 013008          321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDV-RGLG  385 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v-~g~G  385 (451)
                      +|+||+++++++++.+........++.+.+.+.++.++|+.  .+.+.++              .++.++ +... ...|
T Consensus       244 lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~p~~g  320 (395)
T PRK08175        244 WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG--DQQCVRDIAEQYKRRRDVLVKGLHEAG-WMVEMPKAS  320 (395)
T ss_pred             hhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCCCEE
Confidence            99999999999999876433334556667778877777753  1222211              223333 2222 3358


Q ss_pred             eeEEEEecC-----ChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          386 LIIGIEFDV-----SATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       386 ~~~~~~~~~-----~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +++|+++..     ...+++++++ +.||.+.|+..     .+.+|++.  ..+++.+.+++++|.+++++.
T Consensus       321 ~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al~~l~~~l~~~  390 (395)
T PRK08175        321 MYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAIRGIKAMFRAD  390 (395)
T ss_pred             EEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHhc
Confidence            899998842     3578888876 57999998621     25788865  468999999999999998754

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.91  E-value=2.2e-22  Score=201.87  Aligned_cols=325  Identities=16%  Similarity=0.089  Sum_probs=209.0

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~  170 (451)
                      ..+|||..|...  ++ .++.+.+++.+.+......+  ..+....++.+++.+.+.++     .++|++|+|+++|+..
T Consensus        30 ~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~  106 (391)
T PRK07309         30 PGILKLTLGEPD--FT-TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA  106 (391)
T ss_pred             CCeEEcCCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence            458999888763  44 36778888888776421111  11122335556666554433     3589999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC--CCeE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTA  248 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~a  248 (451)
                      +++.+.           .+++.|++.+|+|.++....... +.....   .+..... +  .-|++.|+++++.  .+++
T Consensus       107 ~~~~~~-----------~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~---~~~~~~~-~--~~d~~~l~~~~~~~~~~~~  168 (391)
T PRK07309        107 SLTAIL-----------EPGDKVLLPAPAYPGYEPIVNLV-GAEIVE---IDTTEND-F--VLTPEMLEKAILEQGDKLK  168 (391)
T ss_pred             HHHHhc-----------CCCCEEEEeCCCCcchHHHHHHc-CCEEEE---EecCCcC-C--cCCHHHHHHHhhccCCCeE
Confidence            988654           16889999999999875433322 211111   1111100 0  0278999998863  3566


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc--CCCcceeeeccccc-CCcccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY--GIFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~--~~~pdi~t~sK~lg-~G~~iG  324 (451)
                      +|++...++++| ...+.+.+++|.++|++||+++|+||+|..|-..|.. .....+  +...-+.+|||.++ .|+|+|
T Consensus       169 ~i~l~~P~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG  247 (391)
T PRK07309        169 AVILNYPANPTG-VTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIG  247 (391)
T ss_pred             EEEEECCCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeE
Confidence            666663344555 4678899999999999999999999999887443421 111111  11222347999998 799999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h----HHHHH------HHhCCCCcceecc-cceeEEEE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P----AFLAS------KLARNPHVKDVRG-LGLIIGIE  391 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~----~~~~~------~~~~~~~~~~v~g-~G~~~~~~  391 (451)
                      |+++++++++.+.......+.+.+++++.++..+|+....  .    .+.++      .++.+. +....+ .|+++|+.
T Consensus       248 ~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~p~gg~~~~~~  326 (391)
T PRK07309        248 LIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDLG-FKIIKPDGAFYIFAK  326 (391)
T ss_pred             EEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEE
Confidence            9999999998876433333446678888888888763211  1    11111      222232 222333 35666776


Q ss_pred             ec----CChHHHHHHHH-HCCceeeecC---C--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          392 FD----VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       392 ~~----~~~~~~~~~l~-~~Gv~~~~~~---~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +.    .+..++++.++ ++||.+.|+.   .  ++++|++.+  .+.+++++++++|.+++++++
T Consensus       327 l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~~  390 (391)
T PRK07309        327 IPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEEHA  390 (391)
T ss_pred             CCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhhc
Confidence            63    13567887654 6899998864   1  357888655  478999999999999997764

>PLN02721 threonine aldolase

Probab=99.91  E-value=1.2e-22  Score=201.04  Aligned_cols=319  Identities=14%  Similarity=0.145  Sum_probs=202.7

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF  178 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~  178 (451)
                      +++||.++...    ..+|.+.+++.+.  ..... ..++.+...+|++.++++++.+.++++++|++++..++.+... 
T Consensus         6 ~~~~~~~~~~~----~~~~~~~~a~~~~--~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~-   77 (353)
T PLN02721          6 RVVDLRSDTVT----KPTDAMRAAMANA--EVDDD-VLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCD-   77 (353)
T ss_pred             hhhhhhccccc----CCCHHHHHHHHhc--cCCCc-ccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHcc-
Confidence            56788888774    2678999998764  11111 2244555789999999999988889999999999888776541 


Q ss_pred             hhhcCCCCCCCCceEEEEcCCccCChhh--hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC------CCeEEE
Q 013008          179 QRHSNPDSKEPATEFVSFTNSFHGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP------GKTAAV  250 (451)
Q Consensus       179 ~~~~~~~~~~~~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~------~~~aav  250 (451)
                               .++|.|++.+++|......  .....+....   +.+..++..    .|++.+++.+++      .++++|
T Consensus        78 ---------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~~----~d~~~l~~~i~~~~~~~~~~~~~v  141 (353)
T PLN02721         78 ---------VRGSEVILGDNSHIHLYENGGISTLGGVHPR---TVKNNEDGT----MDLDAIEAAIRPKGDDHFPTTRLI  141 (353)
T ss_pred             ---------CCCCeEEEcCccceehhcccchhhhcCceeE---ecCCCcCCC----cCHHHHHHHHHhccCCCCCcceEE
Confidence                     1488999999987432211  1111111110   011111110    278999999862      367899


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cccccccCCCcc--eeeecccccCCccccc-c
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGIFPD--IMTLAKPLAGGLPIGA-A  326 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pd--i~t~sK~lg~G~~iG~-v  326 (451)
                      +++++++++|+..++.+++++|.++|++||+++|+||+|. ++.... ...........|  +++++|++++  ++|+ +
T Consensus       142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~--~~G~~~  218 (353)
T PLN02721        142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA--PVGSVI  218 (353)
T ss_pred             EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC--ceeeEE
Confidence            9988877766567899999999999999999999999985 321110 001111111233  4578999874  5665 6


Q ss_pred             cccHHHHhhccCCCc--cCCCCCcHHHHHHHHHHHHHh-cC-hH------HHHHHHhCCCCcc--eecccceeEEEEec-
Q 013008          327 LVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKI-SN-PA------FLASKLARNPHVK--DVRGLGLIIGIEFD-  393 (451)
Q Consensus       327 ~~~~~i~~~~~~~~~--~~t~~~~~~~~aaa~aal~~~-~~-~~------~~~~~~~~~~~~~--~v~g~G~~~~~~~~-  393 (451)
                      ++++++++.+.....  ..+....+..+++++.+++.. +. ..      ++...+++++.+.  .....+.++++.+. 
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~  298 (353)
T PLN02721        219 VGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITD  298 (353)
T ss_pred             ecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccC
Confidence            678888876543211  111111122333444444321 11 10      1111334444331  12334567777774 


Q ss_pred             ---CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          394 ---VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       394 ---~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                         .....+++.|.++||.+.+.+. ..+|+++++.++++|+++++++|++++..
T Consensus       299 ~~~~~~~~~~~~L~~~gi~v~~~~~-~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        299 GSRITAEKLCKSLEEHGVLLMPGNS-SRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             CccccHHHHHHHHHhCCcEEecCCC-ceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence               3467899999999999999865 78999999899999999999999988754

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.91  E-value=1.4e-22  Score=199.21  Aligned_cols=295  Identities=17%  Similarity=0.078  Sum_probs=196.0

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~  174 (451)
                      .+++||.+|..  ++|...+.+..   ..+.       .|+... .+|.+.++++++   .++|++++|++|++....++
T Consensus        24 ~~~i~ls~Nen--p~~~~~~~~~~---~~~~-------~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~   90 (339)
T PRK06959         24 DAWLDLSTGIN--PHGYPVPPVPA---DAWR-------RLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPAL   90 (339)
T ss_pred             hhhceeccCCC--CCCCCCCCCCH---HHHH-------hCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHh
Confidence            46899999874  77765333321   1221       144443 789999999887   37999999999999865442


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP  254 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep  254 (451)
                       .   .        ++ +|++.+|+|.++...+...+.             .+..++.++ +.+++    ....+++++|
T Consensus        91 -~---~--------~g-~v~v~~P~y~~y~~~~~~~g~-------------~~~~v~~~~-~~~~~----~~~~v~l~nP  139 (339)
T PRK06959         91 -L---P--------RG-RVGIAPLAYSEYAPAFARHGH-------------RVVPLDEAA-DTLPA----ALTHLIVVNP  139 (339)
T ss_pred             -c---C--------CC-eEEEcCCCcHHHHHHHHHCCC-------------EEEeecccc-hhccc----cCCEEEEeCC
Confidence             2   1        34 489999999887654433221             122233222 22222    1236788888


Q ss_pred             ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCcccccccccHHHH
Q 013008          255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVA  333 (451)
Q Consensus       255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~  333 (451)
                      .|+ +|. +.+.+.+++|.+.|+++++++|+||+|..|.............-..-+.||||.+| +|+|+||++++++++
T Consensus       140 nNP-TG~-~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li  217 (339)
T PRK06959        140 NNP-TAE-RLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPALL  217 (339)
T ss_pred             CCC-CCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchheEEEecCHHHH
Confidence            644 443 56888899999999999999999999988742111111111111122348999999 799999999999999


Q ss_pred             hhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCChHHH
Q 013008          334 SAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSATPV  399 (451)
Q Consensus       334 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~  399 (451)
                      +.+....  ..++.|.++++++.++|+   +.++.++              .++.+. +. +...++++|+.+. +..++
T Consensus       218 ~~l~~~~--~~~~vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~-~~~~~~f~~~~~~-~~~~l  289 (339)
T PRK06959        218 AALRDAL--GAWTVSGPARHAVRAAFA---DAAWQAAMRERLAADGARLAALLRAHG-FA-VHATPLFSWTDDP-RAAAL  289 (339)
T ss_pred             HHHHHhc--CCCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHCC-CC-ccCcceEEEEeCC-CHHHH
Confidence            9886432  356678889999888885   2223222              222332 21 2234677777764 56789


Q ss_pred             HHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          400 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       400 ~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      .+.|.++||++...+..+.+||+  +..+++++++++++|+++++.+..
T Consensus       290 ~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e~~~l~~al~~~~~~~~~  336 (339)
T PRK06959        290 HAALARRGIWTRYFAPPPSVRFG--LPADEAEWQRLEDALAECVPTLAA  336 (339)
T ss_pred             HHHHHhCCeEEEECCCCCeEEEE--CCCCHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999876544678885  435788999999999998887754

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.91  E-value=2.7e-23  Score=197.47  Aligned_cols=308  Identities=18%  Similarity=0.141  Sum_probs=203.2

Q ss_pred             CHHHHHHHHHHHhhc-cc--ccCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008          116 DADWIKAVVDQANVL-TH--VSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK  187 (451)
Q Consensus       116 ~p~v~~a~~~~~~~~-~~--~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~  187 (451)
                      +.-|.+++.+.+... .+  +.+++.......|+++++++++     .++|++|+|+.+|+..++....           
T Consensus        46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~-----------  114 (420)
T KOG0257|consen   46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL-----------  114 (420)
T ss_pred             cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-----------
Confidence            344778888888764 22  1233344557888888888665     5679999999999999999777           


Q ss_pred             CCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee-CCCHHHHHHhcCCCCeEEEEEccccCCCCccccCH
Q 013008          188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE-YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK  266 (451)
Q Consensus       188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~  266 (451)
                      +++|.||+++|.|..+.......++.+.+...- +....+..-. ..|.+.||..+.....+.|++.|.|+.|  -+.++
T Consensus       115 ~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~-~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtG--kvfsR  191 (420)
T KOG0257|consen  115 NPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLK-PKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTG--KVFSR  191 (420)
T ss_pred             CCCCEEEEecCcchhhhhHHhhcCCcceeeccc-cccccccCccccCChHHHHhhccCCccEEEEeCCCCCcC--cccCH
Confidence            379999999999999988877777665543211 1111111101 1389999999987555556666665554  46799


Q ss_pred             HHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccc--ccCCCcceeeecccccC-CcccccccccHHHHhhccCCC
Q 013008          267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE--HYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAINYGD  340 (451)
Q Consensus       267 ~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~--~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~~~~~  340 (451)
                      ++|++|++||++||+++|+||||.-+-..|.   .++..  .+.++..+.++||+++. ||++||+++++.++....+..
T Consensus       192 eeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh  271 (420)
T KOG0257|consen  192 EELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVH  271 (420)
T ss_pred             HHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHh
Confidence            9999999999999999999999977656663   23322  22345556689999995 999999999999998887666


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHhc---C-h--HHHHH--------------HHhCCCCcceeccc-ceeEEEEec------
Q 013008          341 HGSTFAGSPLVCNAAIAVLDKIS---N-P--AFLAS--------------KLARNPHVKDVRGL-GLIIGIEFD------  393 (451)
Q Consensus       341 ~~~t~~~~~~~~aaa~aal~~~~---~-~--~~~~~--------------~~~~~~~~~~v~g~-G~~~~~~~~------  393 (451)
                      ....+..+...+.|..+++..-.   . .  .+...              .++.+ .+...-+. +.+++.++.      
T Consensus       272 ~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~adfs~~~~~~  350 (420)
T KOG0257|consen  272 QNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWADFSLAKSWP  350 (420)
T ss_pred             hccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEEeccccccCC
Confidence            66677777777777766665322   1 1  12221              22333 22223344 456666663      


Q ss_pred             --------CChHHHHHHHHH-CCceeeecCC----------CCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          394 --------VSATPVVDACRD-SGLLVLTAGK----------GNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       394 --------~~~~~~~~~l~~-~Gv~~~~~~~----------~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                              .+...++..+.+ .|+.+.|...          ++.+|+  .++-++|.++.++++|+
T Consensus       351 ~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~--~~~k~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  351 FFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRF--CFCKADETLRKAIERLK  414 (420)
T ss_pred             cchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHH--HHHhhHHHHHHHHHHHh
Confidence                    012235666664 4777665421          123344  45567777777777776

>PRK03321 putative aminotransferase; Provisional

Probab=99.91  E-value=1e-22  Score=201.61  Aligned_cols=308  Identities=19%  Similarity=0.180  Sum_probs=204.2

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR  176 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~  176 (451)
                      .+|||..+..  .+| .+|.+.+++.+.+.....    ++.....++.+.++++++  .++|++++|.++++..+++...
T Consensus        23 ~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~----y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~   95 (352)
T PRK03321         23 GAIKLSSNET--PFG-PLPSVRAAIARAAAGVNR----YPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA   95 (352)
T ss_pred             cceeccCCCC--CCC-CCHHHHHHHHHHHHhcCc----CCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc
Confidence            4789888765  354 467899999887764322    233346778888888876  5689999999988888877543


Q ss_pred             HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEcccc
Q 013008          177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQ  256 (451)
Q Consensus       177 ~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~  256 (451)
                                 .+++.|++..|+|..+.... ...+.....   .+..+..    ..|++++++.+++ ++++|+++.++
T Consensus        96 -----------~~gd~Vli~~p~y~~~~~~~-~~~g~~~~~---v~~~~~~----~~~~~~l~~~~~~-~~~~v~l~~p~  155 (352)
T PRK03321         96 -----------GPGDEVIFAWRSFEAYPILV-QVAGATPVQ---VPLTPDH----THDLDAMAAAITD-RTRLIFVCNPN  155 (352)
T ss_pred             -----------CCCCEEEeCCCCHHHHHHHH-HHcCCEEEE---ccCCCCC----CCCHHHHHHhhcc-CCCEEEEeCCC
Confidence                       16899999999986543222 222211111   1111110    1278999998865 45555555555


Q ss_pred             CCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-ccccccCCCccee---eeccccc-CCcccccccccHH
Q 013008          257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHYGIFPDIM---TLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      +++|.+. +.+.+.++++.| ++++++|+||+|.+|.+.+.. .........++++   +|||.+| .|+|+||++++++
T Consensus       156 NPtG~~~-~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~  233 (352)
T PRK03321        156 NPTGTVV-TPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPE  233 (352)
T ss_pred             CCcCCCc-CHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHH
Confidence            5666654 555555555544 369999999999887544321 1122222234444   7899998 6999999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceecccceeEEEEecCChHH
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVRGLGLIIGIEFDVSATP  398 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~g~G~~~~~~~~~~~~~  398 (451)
                      +++.+...  ..+++.+++++.++.++|+.  .+.+.++             .++... +...+..|.++++.+.....+
T Consensus       234 ~~~~~~~~--~~~~~~s~~~q~~a~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~~-~~~~~~~g~~i~i~l~~~~~~  308 (352)
T PRK03321        234 VIAALRKV--AVPFSVNSLAQAAAIASLAA--EDELLERVDAVVAERDRVRAALRAAG-WTVPPSQANFVWLPLGERTAD  308 (352)
T ss_pred             HHHHHHHh--cCCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCC-CccCCCCCCEEEEeCCCCHHH
Confidence            99988643  35677889999888888752  1222221             122222 222345688888887555778


Q ss_pred             HHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       399 ~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.+.|.++||.+.+.+. +.+|+++   .+.+++++++++|+++++
T Consensus       309 ~~~~l~~~gI~v~~~~~-~~iRi~~---~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        309 FAAAAAEAGVVVRPFAG-EGVRVTI---GAPEENDAFLRAARAWRA  350 (352)
T ss_pred             HHHHHHHCCEEEEccCC-CcEEEee---CCHHHHHHHHHHHHHHhc
Confidence            99999999999998654 5689864   488999999999998764

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.2e-21  Score=197.24  Aligned_cols=325  Identities=18%  Similarity=0.170  Sum_probs=202.7

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccCCCCCHHHHHHHHHHhhc---cCCCeEEecCCHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNMYYSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAI  172 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~---~~~e~v~~~~sG~eA~~~al  172 (451)
                      |..++||..|...  ++ .++.+.+++.+...... +....+..+.+.++++.+...   ...++|++|+|+++|+..++
T Consensus        29 ~~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~  105 (397)
T PRK07568         29 GIKVYHLNIGQPD--IK-TPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAM  105 (397)
T ss_pred             CCCEEEecCCCCC--CC-CCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHH
Confidence            3457787776542  32 36778888877554321 111111222344455444321   12679999999999999998


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV  252 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~  252 (451)
                      +...           .++++|++.+|+|+.+..... ..+.....   .+...+.. ....|++.|++++.++...++++
T Consensus       106 ~~l~-----------~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~---v~~~~~~g-~~~~~~~~l~~~~~~~~~~v~i~  169 (397)
T PRK07568        106 MAIC-----------DPGDEILVPEPFYANYNGFAT-SAGVKIVP---VTTKIEEG-FHLPSKEEIEKLITPKTKAILIS  169 (397)
T ss_pred             HHhc-----------CCCCEEEEecCCCccHHHHHH-HcCCEEEE---eecCcccC-CCCCCHHHHHHhcCccceEEEEE
Confidence            8653           168899999999987643322 22211110   11110000 01125788999886533334445


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-ccc-cccCCCcce---eeeccccc-CCcccccc
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAH-EHYGIFPDI---MTLAKPLA-GGLPIGAA  326 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~-~~~~~~pdi---~t~sK~lg-~G~~iG~v  326 (451)
                      .|. +++| ..++.+.+++|.++|+++|+++|+||+|.+|.+.+.. ... ...+..+.+   .+|||.++ .|+|+||+
T Consensus       170 ~p~-NPtG-~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~  247 (397)
T PRK07568        170 NPG-NPTG-VVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCL  247 (397)
T ss_pred             CCC-CCCC-ccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEE
Confidence            554 4445 4678899999999999999999999999988555531 111 111222333   37999998 59999999


Q ss_pred             ccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ceeEEE
Q 013008          327 LVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLIIGI  390 (451)
Q Consensus       327 ~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~~  390 (451)
                      +++ +++++.+..... .+++.+++.+.++.++|+.  .+.+.++              .++.++.+....+. |+++|+
T Consensus       248 ~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~  324 (397)
T PRK07568        248 ISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDT--PESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIA  324 (397)
T ss_pred             ecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEE
Confidence            984 778876643222 2467788888888887763  1222222              23344434333344 456777


Q ss_pred             Eec-CChHHHHHHHHH------CCceeeecC--------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          391 EFD-VSATPVVDACRD------SGLLVLTAG--------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       391 ~~~-~~~~~~~~~l~~------~Gv~~~~~~--------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+. .+..++.+.|++      +||.+.|+.        ..+.+|+++  ..+++++++++++|.+++++..
T Consensus       325 ~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~--~~~~~~~~~~~~~l~~~l~~~~  394 (397)
T PRK07568        325 KLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAY--VLNEEDLKRAMEILKEALEKYN  394 (397)
T ss_pred             ecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEE--eCCHHHHHHHHHHHHHHHHHhh
Confidence            774 346778888875      599998852        125788865  4678999999999999998754

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.91  E-value=1.3e-21  Score=182.82  Aligned_cols=325  Identities=16%  Similarity=0.171  Sum_probs=221.4

Q ss_pred             CEEEeeccCcccccCCC--CCHHHHHHHHHHHhhccc---ccCCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           98 REYLDLSSGIAVNALGH--GDADWIKAVVDQANVLTH---VSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      +.+|-+..|..+. +|-  ..++..+|+.++++....   .+..+....+.++++++.+..+    .++|++|+|.++|+
T Consensus        61 k~iipl~~GDPsv-~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAI  139 (447)
T KOG0259|consen   61 KPILPLGHGDPSV-YPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAI  139 (447)
T ss_pred             ceeccCCCCCCCc-cccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHH
Confidence            5777777776643 442  567888999998876432   1222233447788888776654    78999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCCHHHHHHhcCCCCe
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKT  247 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~  247 (451)
                      +.++.++.           +++..|+++.|+|.-+...+....-..+   .| .+.|+ -+.+   |++.+|.++++.+.
T Consensus       140 e~~i~~LA-----------~p~aNILlPrPGfp~Y~~~a~~~~lEVR---~y-dlLPe~~weI---DL~~veal~DENT~  201 (447)
T KOG0259|consen  140 ELAISSLA-----------NPGANILLPRPGFPLYDTRAIYSGLEVR---YY-DLLPEKDWEI---DLDGVEALADENTV  201 (447)
T ss_pred             HHHHHHhc-----------CCCCceecCCCCCchHHHhhhhcCceeE---ee-cccCccccee---chHHHHHhhccCee
Confidence            99999665           2788999999999765433322211111   11 11122 1222   89999999988788


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc-CCCccee--eeccccc-CCcc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-GIFPDIM--TLAKPLA-GGLP  322 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~-~~~pdi~--t~sK~lg-~G~~  322 (451)
                      |.|+++|.|+.|+  +++.+-|++|+++|+|+|+++|.||||..+-+.+..| ....+ .+.|-++  .+||.+- .|||
T Consensus       202 AivviNP~NPcGn--Vys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWR  279 (447)
T KOG0259|consen  202 AIVVINPNNPCGN--VYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWR  279 (447)
T ss_pred             EEEEeCCCCCCcc--cccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCce
Confidence            9999999988875  5899999999999999999999999997664445433 23333 3455443  4678765 7999


Q ss_pred             cccccccHH--HH------hhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc-
Q 013008          323 IGAALVTEK--VA------SAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK-  379 (451)
Q Consensus       323 iG~v~~~~~--i~------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~-  379 (451)
                      +||++..+.  ++      +.+.. ...-+.+.+.+.|+|.-.-|+.- .+++.+.              .++.+|++. 
T Consensus       280 lGWi~~hD~~gvf~~~~~~q~~~~-~~~~~~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na~l~y~~Lk~IP~l~c  357 (447)
T KOG0259|consen  280 LGWIALHDPRGVFRDTKVVQGIKN-FLDIIPGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNADLCYSRLKDIPCLTC  357 (447)
T ss_pred             eeeEEEecccccccchHHHHHHHH-HHhccCCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhHHHHHHHHhcCCCccc
Confidence            999986421  11      22211 11223445667777777666632 2333333              567888776 


Q ss_pred             eecccceeEEE-Eec-------CChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          380 DVRGLGLIIGI-EFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       380 ~v~g~G~~~~~-~~~-------~~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .++++|.|+.+ .++       .+..+|+++|. |+.+++.|+.   ..+++|+  .++...+.++++++||++..++-.
T Consensus       358 p~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri--~i~~~~~~leea~~Rik~Fc~RH~  435 (447)
T KOG0259|consen  358 PVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRI--VITVEEEMLEEAFSRIKEFCDRHS  435 (447)
T ss_pred             CcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEE--EEccChHHHHHHHHHHHHHHHhhh
Confidence            67888876543 332       34567888886 5688888874   3588888  567789999999999999887643

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.91  E-value=4e-22  Score=205.05  Aligned_cols=311  Identities=11%  Similarity=0.076  Sum_probs=195.1

Q ss_pred             CHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 013008          116 DADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDS  186 (451)
Q Consensus       116 ~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~  186 (451)
                      +..+.+++.+.++.......     .+..+.++.+++++.+..+    .++|++|+|+++|+..+++++..         
T Consensus        90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~---------  160 (481)
T PTZ00377         90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG---------  160 (481)
T ss_pred             CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc---------
Confidence            44677777766654321111     1122335666666665433    67999999999999999997641         


Q ss_pred             CCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeE-EEEEccccCCCC
Q 013008          187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTA-AVFVEPIQGEGG  260 (451)
Q Consensus       187 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a-avi~ep~~~~~G  260 (451)
                       +++|.|++.+|+|+++.......+.....    .+..++..+-  -|+++|++.+.+     .+++ ++++.|. +++|
T Consensus       161 -~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~----v~~~~~~~~~--~d~~~l~~~l~~~~~~~~~~k~l~l~~P~-NPTG  232 (481)
T PTZ00377        161 -DPSDGVMIPIPQYPLYSAAITLLGGKQVP----YYLDEEKGWS--LDQEELEEAYEQAVRNGITPRALVVINPG-NPTG  232 (481)
T ss_pred             -CCCCEEEECCCCchhHHHHHHHcCCEEEE----EEeccccCCC--CCHHHHHHHHHHHHhcCCCeeEEEEECCC-CCCC
Confidence             15899999999999886554443322211    1111110000  178999988852     1455 4556554 4445


Q ss_pred             ccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc-ccc-cccc--cCCCc------ce---eeecccc-c-CCccccc
Q 013008          261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-YLW-AHEH--YGIFP------DI---MTLAKPL-A-GGLPIGA  325 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~-~~~~--~~~~p------di---~t~sK~l-g-~G~~iG~  325 (451)
                       .+++.+.+++|+++|++||++||+||+|..+.+.+ ..+ ....  .++.+      .+   -+|||++ + .|+|+||
T Consensus       233 -~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~  311 (481)
T PTZ00377        233 -QVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGY  311 (481)
T ss_pred             -cCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEE
Confidence             46799999999999999999999999998764422 111 1100  11111      23   3689986 5 5999999


Q ss_pred             ccc---cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc---C--hHH-----------HHH------HHhCCCCcce
Q 013008          326 ALV---TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---N--PAF-----------LAS------KLARNPHVKD  380 (451)
Q Consensus       326 v~~---~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~-----------~~~------~~~~~~~~~~  380 (451)
                      +++   ++++++.+.... ..+++.|++++.++.++|+...   .  +.+           .++      .++.++.+..
T Consensus       312 ~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~  390 (481)
T PTZ00377        312 FELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSC  390 (481)
T ss_pred             EEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEe
Confidence            986   899988876433 2345678899999988885210   0  011           111      3344555554


Q ss_pred             eccc-ceeEEEEecC--------------ChHHHHHH-HHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHH
Q 013008          381 VRGL-GLIIGIEFDV--------------SATPVVDA-CRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEI  438 (451)
Q Consensus       381 v~g~-G~~~~~~~~~--------------~~~~~~~~-l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~  438 (451)
                      ..+. |+++|+.+..              ....++.. |.++||.+.|+..      .+++|++..  .++|++++++++
T Consensus       391 ~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~r  468 (481)
T PTZ00377        391 QPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKK  468 (481)
T ss_pred             ecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHH
Confidence            5554 4666655421              12234444 4567999998642      147888654  788999999999


Q ss_pred             HHHHHHHHh
Q 013008          439 LCKTLPVLD  447 (451)
Q Consensus       439 l~~~l~~~~  447 (451)
                      |.+++++..
T Consensus       469 l~~~~~~~~  477 (481)
T PTZ00377        469 IKEFHESFM  477 (481)
T ss_pred             HHHHHHHHH
Confidence            999988754

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=5e-22  Score=198.01  Aligned_cols=309  Identities=20%  Similarity=0.187  Sum_probs=201.3

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~  174 (451)
                      +..++||..|..  ++| .+|.+.+++.+.......    |+...-.+|.+.++++++  .++|++++|+++++..++++
T Consensus        35 ~~~~i~l~~~~~--~~~-~~~~~~~al~~~~~~~~~----Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~  107 (371)
T PRK05166         35 VPRIAKLGSNEN--PLG-PSPAVRRAFADIAELLRL----YPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRA  107 (371)
T ss_pred             CcceEEcCCCCC--CCC-CCHHHHHHHHHHHHHhhc----CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH
Confidence            447899998865  355 678899988875544221    222222378888888876  67899999999999988886


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP  254 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep  254 (451)
                      +.           +++|.|++.+|+|.++....... |.....   .+..++..    -|++++++.+++. +++|++..
T Consensus       108 ~~-----------~~gd~vli~~P~y~~~~~~~~~~-g~~~~~---v~~~~~~~----~~~~~l~~~~~~~-~~~v~l~~  167 (371)
T PRK05166        108 VL-----------RPGDRVVTLYPSFPLHEDYPTMM-GARVER---VTVTPDLG----FDLDALCAAVARA-PRMLMFSN  167 (371)
T ss_pred             hc-----------CCCCEEEEcCCChHHHHHHHHHc-CCeEEE---eecCCCCC----CCHHHHHHhhhcC-CCEEEEeC
Confidence            54           16899999999998764332222 211100   11111111    1789999988653 34444433


Q ss_pred             ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc-CC---Ccceeeeccccc-CCcccccccc
Q 013008          255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY-GI---FPDIMTLAKPLA-GGLPIGAALV  328 (451)
Q Consensus       255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~-~~---~pdi~t~sK~lg-~G~~iG~v~~  328 (451)
                      .++++|. .++.+.+++|.++|++ ++++|+||+|..|-..+.. ...... ..   ..-+.+|||.++ +|+|+||+++
T Consensus       168 p~NPtG~-~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~  245 (371)
T PRK05166        168 PSNPVGS-WLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLV  245 (371)
T ss_pred             CCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeec
Confidence            3444554 5788889999999875 8999999999877422211 111111 11   122347999999 7999999765


Q ss_pred             -cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec
Q 013008          329 -TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD  393 (451)
Q Consensus       329 -~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~  393 (451)
                       ++++++.+....  ..++.|.+++.++.+++.   ..++.++              .++.++ +...++.|.++|+.+.
T Consensus       246 ~~~~l~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~p~~g~fl~~~~~  319 (371)
T PRK05166        246 SDPELVGLLDRVR--TPFNVNGAAQAAALAALD---DEEHLAKGVALALAERERLKKELAEMG-YRIAPSRANFLFFDAR  319 (371)
T ss_pred             CCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCc-CeeCCCcCCEEEEeCC
Confidence             788888775322  346678888888887775   2222222              223333 2334567889888875


Q ss_pred             CChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          394 VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       394 ~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .+..++.+.|.++||.+.|+..   .+++|+++.   +.++.+++++.|++++
T Consensus       320 ~~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        320 RPASAVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVL  369 (371)
T ss_pred             CCHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            5678899999999999988632   367888654   5666777777777654

>PRK08354 putative aminotransferase; Provisional

Probab=99.90  E-value=9.1e-22  Score=191.34  Aligned_cols=293  Identities=14%  Similarity=0.077  Sum_probs=191.3

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a  175 (451)
                      +...+|||..|..  +++  +|.+.+++.+.++...    .++.  ...|.++++++++ ++|++|+|+++|+..++.++
T Consensus         6 ~~~~~i~l~~~~n--p~~--p~~~~~a~~~~~~~~~----~yp~--~~~l~~~ia~~~~-~~I~vt~G~~~al~~~~~~~   74 (311)
T PRK08354          6 REEGLIDFSASVN--PYP--PEWLDEMFERAKEISG----RYTY--YEWLEEEFSKLFG-EPIVITAGITEALYLIGILA   74 (311)
T ss_pred             CccceeEecCCCC--CCC--CHHHHHHHHHHHHHhh----cCCC--hHHHHHHHHHHHC-CCEEECCCHHHHHHHHHHhh
Confidence            3456899998743  443  5889999987765421    1222  3567888888877 57999999999998777533


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI  255 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~  255 (451)
                      .            +++.|++.+|+|.++...+...+...             ..++ .|++.+++.+++ ...++++.|.
T Consensus        75 ~------------~gd~vlv~~P~y~~~~~~~~~~g~~~-------------~~~~-~d~~~l~~~~~~-~~~vi~~~P~  127 (311)
T PRK08354         75 L------------RDRKVIIPRHTYGEYERVARFFAARI-------------IKGP-NDPEKLEELVER-NSVVFFCNPN  127 (311)
T ss_pred             C------------CCCeEEEeCCCcHHHHHHHHHcCCEE-------------eecC-CCHHHHHHhhcC-CCEEEEecCC
Confidence            3            58899999999988865544333211             1111 378899888763 4467777885


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCcccccccccHHHHh
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS  334 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~  334 (451)
                      | ++| ...+.+.+++|.++|++||+++|+||+|.+|...+..  .. .....-+.+|||+++ .|+|+||+++   +.+
T Consensus       128 N-PTG-~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~--~~-~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~  199 (311)
T PRK08354        128 N-PDG-KFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES--PE-GENIIKLRTFTKSYGLPGIRVGYVKG---FEE  199 (311)
T ss_pred             C-CCC-CccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc--cC-CCcEEEEeccHhhcCCccceeeeeee---hHH
Confidence            4 444 4679999999999999999999999999888443321  11 222233458999999 7999999998   334


Q ss_pred             hccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----HH---hCCCCcceecccceeEEEEecCChHHHHHHHHHCC
Q 013008          335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----KL---ARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSG  407 (451)
Q Consensus       335 ~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----~~---~~~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~G  407 (451)
                      .++...  ..+..+.++++++.+.++.  ..+++++    +.   +.+.......+.|.++++++. +..++++.|.++|
T Consensus       200 ~l~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~g  274 (311)
T PRK08354        200 AFRSVR--MPWSIGSTGYAFLEFLIED--DFEHLRKTMPLIWREKERFEKALYVKSDANFFIKDVG-DAEKFVEFLKRNG  274 (311)
T ss_pred             HHHHcC--CCccCCHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEECC-CHHHHHHHHHHCC
Confidence            443222  2344555666666555541  1111111    11   111111123466777777653 4678999999999


Q ss_pred             ceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          408 LLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       408 v~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      |.+.|+..   ++++||++.   +.++.+++++.|++.
T Consensus       275 v~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~  309 (311)
T PRK08354        275 ILVRDCTSFGLPGYIRFSVR---DREENEKLIRALREW  309 (311)
T ss_pred             eEEEecccCCCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence            99998743   367888644   555666666666653

>PLN02672 methionine S-methyltransferase

Probab=99.90  E-value=5.1e-22  Score=214.12  Aligned_cols=325  Identities=11%  Similarity=0.110  Sum_probs=210.8

Q ss_pred             EEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--C---CeEEecCCHH
Q 013008           91 KLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A---DRVFFSNTGT  165 (451)
Q Consensus        91 ~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~---e~v~~~~sG~  165 (451)
                      ++.+.+|..+|++..|..  .++ .+|.+++++.+.+.+..+  ..+..+.+.++++++++.++  .   ++|++++|++
T Consensus       690 ~~~~~~g~~vI~LsinE~--d~p-pPp~V~eAi~eal~~~~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~  764 (1082)
T PLN02672        690 SVSGSQESSLIHMDVDES--FLP-VPSAVKASIFESFVRQNI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSL  764 (1082)
T ss_pred             CCcccCCCCEEEEeCCCC--CCC-CCHHHHHHHHHHHhhcCC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHH
Confidence            345557889999998866  455 788999999988765322  12234458899999998876  2   3799999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC--CeeEeeCCCHHHHHHhcC
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQ  243 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~  243 (451)
                      +++..++++..           .++|.|++.+|+|..+...+...+.... .   .+..+  ++.    .|++.|+++++
T Consensus       765 elL~lll~aLl-----------~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv-~---Vpl~~e~gf~----lD~d~Le~al~  825 (1082)
T PLN02672        765 ALFNKLVLCCV-----------QEGGTLCFPAGSNGTYVSAAKFLKANFR-R---IPTKSSDGFK----LTAKTLASTLE  825 (1082)
T ss_pred             HHHHHHHHHHc-----------CCCCEEEEeCCChHHHHHHHHHcCCEEE-E---EecccccCCC----CCHHHHHHHhc
Confidence            99888888655           2689999999999888765544332211 1   12211  111    17889999986


Q ss_pred             C-CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc---ccc----cc-CC-----Ccc
Q 013008          244 P-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW---AHE----HY-GI-----FPD  309 (451)
Q Consensus       244 ~-~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~---~~~----~~-~~-----~pd  309 (451)
                      + ....++++.|.++++| .+++++.+++|.++|++||++||+||+|.++-+.+...   ...    .+ ..     ..-
T Consensus       826 ~~~~~~I~L~nPnhNPTG-~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIv  904 (1082)
T PLN02672        826 TVKKPWVYISGPTINPTG-LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVAL  904 (1082)
T ss_pred             cCCCCEEEEECcCCCCcC-ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEE
Confidence            4 3456788888745555 46899999999999999999999999998775544321   010    11 11     112


Q ss_pred             eeeeccccc-CCccccccccc-HHHHhhccCCCc-cCCCCCcHHHHHHHHHHHHHhcChHH-----------HHH-----
Q 013008          310 IMTLAKPLA-GGLPIGAALVT-EKVASAINYGDH-GSTFAGSPLVCNAAIAVLDKISNPAF-----------LAS-----  370 (451)
Q Consensus       310 i~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~~~~~-----------~~~-----  370 (451)
                      +.+|||.++ +|+|+||++++ +++++.+..... ...+..+.+++++++++++. +..+|           .++     
T Consensus       905 L~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~-~~~~~~~~l~e~r~~Lk~rRd~L~  983 (1082)
T PLN02672        905 LGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQ-KSSDLLDGVAEQKKILKSRAERLK  983 (1082)
T ss_pred             EeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHH
Confidence            237899998 58999999986 458887754211 11112233344444433310 11111           111     


Q ss_pred             -HHhCCCCcceeccc-ceeEEEEec-------------------CChHHHHHHHHHC-CceeeecCC---CCEEEEeCCC
Q 013008          371 -KLARNPHVKDVRGL-GLIIGIEFD-------------------VSATPVVDACRDS-GLLVLTAGK---GNVVRLVPPL  425 (451)
Q Consensus       371 -~~~~~~~~~~v~g~-G~~~~~~~~-------------------~~~~~~~~~l~~~-Gv~~~~~~~---~~~iri~~~~  425 (451)
                       .++.+ .+...++. |+++|+.+.                   .+..++++.|+++ ||.+.|+..   .+++||+  +
T Consensus       984 e~L~~~-Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIs--f 1060 (1082)
T PLN02672        984 ETLEAC-GWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFS--F 1060 (1082)
T ss_pred             HHHHHC-CCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEE--e
Confidence             22333 23334454 556665431                   1356799999976 999998632   3678885  4


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 013008          426 IISEQELDQAVEILCKTLP  444 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.+++++++++++|.++++
T Consensus      1061 a~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1061 ALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence            5689999999999998764

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.90  E-value=2.3e-22  Score=199.97  Aligned_cols=311  Identities=16%  Similarity=0.138  Sum_probs=200.2

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHh--hcccccCCC-CCHHHHHHHHHHhhccC--------CC-eEEecCCHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQAN--VLTHVSNMY-YSIPQIELAKRLVACSF--------AD-RVFFSNTGTE  166 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~~~~~-~~~~~~~l~~~l~~~~~--------~e-~v~~~~sG~e  166 (451)
                      ++|||.+|..  .++++||.+.+++.+..+  ........| ......+|.+.++++++        .+ .+++++|..+
T Consensus         2 ~~I~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~   79 (363)
T PF00155_consen    2 DVINLGSNAP--LLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA   79 (363)
T ss_dssp             TEEESSSSST--SSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred             CEEEEECCCC--CCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence            5789998876  344456666665555443  111111223 23336777777777665        67 7888876666


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee-------CCCHHHHH
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE-------YGNIEATR  239 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le  239 (451)
                      ++..++.++.  .        .+++.|++.+|+|.++.......+ ..            +..++       ..|+++|+
T Consensus        80 ~~~~~~~~~~--~--------~~~~~vlv~~P~y~~~~~~~~~~g-~~------------~~~~~~~~~~~~~~d~~~l~  136 (363)
T PF00155_consen   80 ALFLLLRLLK--I--------NPGDTVLVPDPCYPSYIEAARLLG-AE------------VIPVPLDSENDFHLDPEALE  136 (363)
T ss_dssp             HHHHHHHHHH--S--------STTSEEEEEESSSTHHHHHHHHTT-SE------------EEEEEEEETTTTEETHHHHH
T ss_pred             chhhhhhccc--c--------cccccceecCCccccccccccccC-ce------------eeeccccccccccccccccc
Confidence            6666666553  1        158899999999987754443322 11            12222       23899999


Q ss_pred             HhcCCC-----CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-c-ccccCCCcc---
Q 013008          240 KLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A-HEHYGIFPD---  309 (451)
Q Consensus       240 ~~l~~~-----~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~-~~~~~~~pd---  309 (451)
                      +.+++.     ++.+|++..+++++|. .++.+.+++|.++|++||+++|+||+|.++......+ . .....-.++   
T Consensus       137 ~~l~~~~~~~~~~~~v~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~  215 (363)
T PF00155_consen  137 EALDELPSKGPRPKAVLICNPNNPTGS-VLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIV  215 (363)
T ss_dssp             HHHHTSHTTTETEEEEEEESSBTTTTB-B--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEE
T ss_pred             cccccccccccccceeeeccccccccc-ccccccccchhhhhcccccceeeeeceeccccCCCccCccccccccccccee
Confidence            988742     3466666666666665 5799999999999999999999999998763332211 1 112222233   


Q ss_pred             eeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH--------------HHh
Q 013008          310 IMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLAS--------------KLA  373 (451)
Q Consensus       310 i~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~--------------~~~  373 (451)
                      +-++||.+| .|+|+||+++++++++.++....  .+..+.+.++++.+++..... .++.++              .++
T Consensus       216 ~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~  293 (363)
T PF00155_consen  216 VGSLSKSFGLPGLRVGYIVAPPELIERLRRFQR--SGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALE  293 (363)
T ss_dssp             EEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHH--HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeccccccccccccccccchhhhhhhhhhccc--cccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHH
Confidence            337899998 69999999999999988864332  222366777666666653221 112222              222


Q ss_pred             CCCCcceec-ccceeEEEEecC-ChHHHHHHHHHC-CceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          374 RNPHVKDVR-GLGLIIGIEFDV-SATPVVDACRDS-GLLVLTAGK---GNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       374 ~~~~~~~v~-g~G~~~~~~~~~-~~~~~~~~l~~~-Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                      +. .+.... ..|.++++.++. +..++++.|+++ ||.+.|+..   .+.+|+++ ..+++|++++++++|
T Consensus       294 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  294 EI-GITVLPPEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             HT-TSEEEHHSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             Hh-hhheeeccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence            22 232233 357777777753 367899999998 999998532   46899987 688999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.90  E-value=1.5e-21  Score=196.59  Aligned_cols=325  Identities=14%  Similarity=0.164  Sum_probs=204.6

Q ss_pred             CCCEEEeeccCcccc--cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--------CCeEEecCCHH
Q 013008           96 EGREYLDLSSGIAVN--ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--------ADRVFFSNTGT  165 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------~e~v~~~~sG~  165 (451)
                      .|..++||..|....  .+ ..++.+.+++.+.+..... ..+.......++.+.++++++        .+++++|+|++
T Consensus        29 ~~~~~i~l~~g~p~~~~~~-~~~~~~~~~~~~~l~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t  106 (403)
T TIGR01265        29 PEKPIIPLSHGDPSVFGNL-RTDPEAEEAVKDALRSGKF-NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCS  106 (403)
T ss_pred             cCCCeEEeCCCCCCccCCC-CCCHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChH
Confidence            467889999887641  12 2568899999887764211 111112223334444444432        57899999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  245 (451)
                      +|+..+++++..           ++++|++.+|+|.++...+...+.....    .+..+....  --|++.+++++.++
T Consensus       107 ~al~~~~~~l~~-----------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----~~~~~~~~~--~~d~~~l~~~~~~~  169 (403)
T TIGR01265       107 QAIEICIEALAN-----------PGANILVPRPGFPLYDTRAAFSGLEVRL----YDLLPEKDW--EIDLDGLEALADEK  169 (403)
T ss_pred             HHHHHHHHHhCC-----------CCCEEEEeCCCchhHHHHHHHcCCEEEE----ecCCcccCC--ccCHHHHHHHhCcC
Confidence            999999997651           5889999999997664433222211110    011110000  02789999988654


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccCC---Ccceeeeccccc-CC
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGI---FPDIMTLAKPLA-GG  320 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~---~pdi~t~sK~lg-~G  320 (451)
                      ...++++.|. ++.| ...+.+.+++|.++|+++|+++|+||+|.+|...+..+ ....+.-   ..-+.+|||.++ .|
T Consensus       170 ~~~v~i~~p~-NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG  247 (403)
T TIGR01265       170 TVAIVVINPS-NPCG-SVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPG  247 (403)
T ss_pred             ccEEEEecCC-CCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCc
Confidence            4455555554 4455 46788899999999999999999999998885544321 1111111   122347999976 69


Q ss_pred             ccccccccc--HH-----HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc
Q 013008          321 LPIGAALVT--EK-----VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK  379 (451)
Q Consensus       321 ~~iG~v~~~--~~-----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~  379 (451)
                      +|+||++++  ++     +.+.+.... ..+++.+.+++.++.++|+. ..+.++++              .++.++.+.
T Consensus       248 lRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  325 (403)
T TIGR01265       248 WRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDILEN-TPQEFFDGKISVLKSNAELCYEELKDIPGLV  325 (403)
T ss_pred             ceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            999999873  22     333332211 12456688888888888863 12222222              234444343


Q ss_pred             e-ecccceeEEEEecC-------ChHHHHHHHH-HCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          380 D-VRGLGLIIGIEFDV-------SATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       380 ~-v~g~G~~~~~~~~~-------~~~~~~~~l~-~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      . .+..|+++|+.++.       +..++++.|+ ++||.+.|+..   .+++|++..  ..++.+++++++|.+++++
T Consensus       326 ~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~  401 (403)
T TIGR01265       326 CPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITIT--VPESMLEEACSRIKEFCER  401 (403)
T ss_pred             ecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            2 24458888888742       4667888865 67999998742   467888654  5789999999999998865

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.90  E-value=5.5e-22  Score=200.22  Aligned_cols=325  Identities=15%  Similarity=0.108  Sum_probs=194.7

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-----ccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-----HVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGT  165 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~  165 (451)
                      |..++|+..|..  .++ .+|.+.+++.+.+.+..     ..+  ..+....+..+++++.+..+    .++|++|+|+.
T Consensus        33 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~  109 (409)
T PRK07590         33 EAKIIRLGIGDV--TQP-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK  109 (409)
T ss_pred             CCceEEecCcCC--CCC-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence            566889888865  343 56889999998886531     111  11122234555555543332    78999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  245 (451)
                      +|+...+.+ .           .++|+|++.+|+|+++...+...+.... ..... ....+..++.+.-+.++.-+...
T Consensus       110 ~al~~l~~~-~-----------~~gd~V~v~~P~Y~~~~~~~~~~g~~~~-~~~~~-~~~~~~~v~~~~~~~~~~d~~~~  175 (409)
T PRK07590        110 CDTGNILDI-F-----------GPDNTIAVTDPVYPVYVDTNVMAGRTGE-ANEDG-RYSGIVYLPCTAENNFVPELPEE  175 (409)
T ss_pred             HHHHHHHHh-c-----------CCCCEEEEeCCCCcchHHHHHHcCCccc-ccccc-cccceeEeecccccCCcccCccc
Confidence            998875432 1           1689999999999988654443332100 00000 00012222221000111111123


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc-C---CCcceeeeccccc-C
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY-G---IFPDIMTLAKPLA-G  319 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~-~---~~pdi~t~sK~lg-~  319 (451)
                      ++++|++...++++| .+++.+.+++|.++|++||++||+||+|..|-..+.. ...... +   ....+.+|||.++ .
T Consensus       176 ~~k~i~l~nP~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p  254 (409)
T PRK07590        176 KVDIIYLCFPNNPTG-TVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT  254 (409)
T ss_pred             CceEEEEeCCCCCcC-CcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCc
Confidence            455555433344445 4679999999999999999999999999887433321 111111 1   1233447999998 7


Q ss_pred             CcccccccccHHHHhhccC-----------CCccCCC-CCcHHHHHHHHHHHHHhcChHHHHH--------------HHh
Q 013008          320 GLPIGAALVTEKVASAINY-----------GDHGSTF-AGSPLVCNAAIAVLDKISNPAFLAS--------------KLA  373 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~-----------~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~  373 (451)
                      |+|+||+++++++++.+..           .....++ +.+.+++.++.++++.- ...+.++              .++
T Consensus       255 GlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~l~~~L~  333 (409)
T PRK07590        255 GTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE-GKAQIKELIDYYMENAKIIREGLE  333 (409)
T ss_pred             CceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998873210           0112233 46778888887777521 1222221              222


Q ss_pred             CCCCcceecc-cceeEEEEec--CChHHHHHHHHH-CCceeeecC---C--CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          374 RNPHVKDVRG-LGLIIGIEFD--VSATPVVDACRD-SGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       374 ~~~~~~~v~g-~G~~~~~~~~--~~~~~~~~~l~~-~Gv~~~~~~---~--~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .++ +....+ .|+++|+.+.  ....++++.|++ .||.+.|+.   .  .+.+|++  +..+++++++++++|.+++
T Consensus       334 ~~~-~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~~l~rl~~~~  409 (409)
T PRK07590        334 SAG-FEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSRENVLEAMERIKKAL  409 (409)
T ss_pred             hcC-CceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCHHHHHHHHHHHHhhC
Confidence            332 332334 4678888884  246778888874 699998863   1  2578886  4568999999999998753

>PRK09265 aminotransferase AlaT; Validated

Probab=99.90  E-value=1.5e-21  Score=196.79  Aligned_cols=329  Identities=15%  Similarity=0.166  Sum_probs=203.0

Q ss_pred             CCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhcc--C--CCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACS--F--ADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~--~e~v~~~~sG~eA~~  169 (451)
                      .|+.++||..|... .+++ .+|++.+++.+.+.....++. .+..+.++.+++++....  +  .++|++++|+++++.
T Consensus        31 ~~~~~i~l~~g~p~-~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~  109 (404)
T PRK09265         31 EGHKILKLNIGNPA-PFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIV  109 (404)
T ss_pred             cCCCeEEecCCCCC-cCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHH
Confidence            56788999887553 3565 567888888876654211111 111222444444443221  2  678999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      .+++++.           .++|.|++.+|+|..+.......+.... .   .+......+  .-|++++++.+.++...+
T Consensus       110 ~~~~~~~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~v-~---~~~~~~~~~--~~d~~~l~~~~~~~~~~v  172 (404)
T PRK09265        110 MAMQALL-----------NNGDEVLVPAPDYPLWTAAVSLSGGKPV-H---YLCDEEAGW--FPDLDDIRSKITPRTKAI  172 (404)
T ss_pred             HHHHHhC-----------CCCCEEEEeCCCCcChHHHHHHcCCEEE-E---EecccccCC--CCCHHHHHHhccccceEE
Confidence            9988654           1688999999999876544433221111 1   011000000  027899999886543345


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc--C-CCcceeeeccccc-CCcccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY--G-IFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~--~-~~pdi~t~sK~lg-~G~~iG  324 (451)
                      +++.|. +++|. ..+.+.+++|.++|++||+++|+||+|.+|-+.+.. ......  + ...-+-+|||.++ +|+|+|
T Consensus       173 ~l~~P~-NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG  250 (404)
T PRK09265        173 VIINPN-NPTGA-VYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVG  250 (404)
T ss_pred             EEECCC-CCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceE
Confidence            556664 44554 568899999999999999999999999887443321 111111  1 1122346899996 699999


Q ss_pred             cccc--cHH----HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC-hHH-------HHH------HHhCCCCcceec-c
Q 013008          325 AALV--TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAF-------LAS------KLARNPHVKDVR-G  383 (451)
Q Consensus       325 ~v~~--~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~-------~~~------~~~~~~~~~~v~-g  383 (451)
                      |+++  +++    +++.+... ...+++.|.+++.++.++|+..+. ..+       .++      .++.++.+.... .
T Consensus       251 ~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~  329 (404)
T PRK09265        251 WMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKPK  329 (404)
T ss_pred             EEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC
Confidence            9985  443    33333211 123456778888888888742111 011       111      334444443333 3


Q ss_pred             cceeEEEEecC------Ch-HHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          384 LGLIIGIEFDV------SA-TPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       384 ~G~~~~~~~~~------~~-~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .|+++|+.++.      .. ..+.+.|.++||.+.|+..     .+++|++.  ..++|++++++++|.++++..+
T Consensus       330 ~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~~l~rl~~~l~~~~  403 (404)
T PRK09265        330 GALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEEAIGRIGRFLSGYR  403 (404)
T ss_pred             cceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHhc
Confidence            47788887742      22 3466777889999988631     36788865  4689999999999999987654

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.90  E-value=8.7e-22  Score=199.38  Aligned_cols=333  Identities=14%  Similarity=0.095  Sum_probs=201.2

Q ss_pred             EEEeeccCcccccCCCCC--HHHHHHHHHHHhhcc-------cccCCCCCHHHHHHHHHHhhccC----CCeEEecCCHH
Q 013008           99 EYLDLSSGIAVNALGHGD--ADWIKAVVDQANVLT-------HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGT  165 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~  165 (451)
                      ..|||..+...  + ...  +.+.+++.+.+++..       +....+....+..+++++.+.++    .++|++|+|++
T Consensus        31 ~~i~l~~g~p~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~  107 (416)
T PRK09440         31 GAIMLGGGNPA--H-IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQ  107 (416)
T ss_pred             CceeccCCCCC--c-cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChH
Confidence            45888876542  1 122  356677766654321       11111222346666766665433    67999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEE-EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHhcC
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVS-FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQ  243 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~-~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~  243 (451)
                      +|+..++++......      ..+++.|++ .+|+|+++...+..............+...+.  ..+ -|+++|+  +.
T Consensus       108 ~al~~~~~~l~~~~~------~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~--~~  177 (416)
T PRK09440        108 SAFFYLFNLFAGRRA------DGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQ--FKYHVDFEHLH--ID  177 (416)
T ss_pred             HHHHHHHHHHhcccc------CCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccc--cccCCCHHHcc--cC
Confidence            999999986652100      013678999 69999988653322110000000011111110  001 2677776  33


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cc--cccCCCcceeeecccccCC
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH--EHYGIFPDIMTLAKPLAGG  320 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~--~~~~~~pdi~t~sK~lg~G  320 (451)
                      . +++++++...++++|. +++.+.+++|.++|++||+++|+||+|..+ .....+ ..  ...+...-+.+|||....|
T Consensus       178 ~-~~~~i~l~~P~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~~~~~~vI~~~SfSK~~~pG  254 (416)
T PRK09440        178 E-DTGAICVSRPTNPTGN-VLTDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATPLWNPNIILCMSLSKLGLPG  254 (416)
T ss_pred             C-CceEEEEecCCCCCCc-cCCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCccccCCeEEEecccccCCCc
Confidence            3 4444444433455554 679999999999999999999999999643 111110 00  0011223345899974469


Q ss_pred             cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcCh----H-HH----HH-------HHhCCCC--cceec
Q 013008          321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP----A-FL----AS-------KLARNPH--VKDVR  382 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~----~-~~----~~-------~~~~~~~--~~~v~  382 (451)
                      +|+||+++++++++.+.........+.+.+.+.++.++|+.-.-.    . ..    ++       +.+.++.  +....
T Consensus       255 lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~  334 (416)
T PRK09440        255 VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHK  334 (416)
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEec
Confidence            999999999999988864433344567888998888887521100    0 10    11       2222222  22233


Q ss_pred             c-cceeEEEEec---CChHHHHHHHHHCCceeeecCC---C---------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          383 G-LGLIIGIEFD---VSATPVVDACRDSGLLVLTAGK---G---------NVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       383 g-~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~~---~---------~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      + .|+++|+++.   ....++.+.|.++||.+.|+..   +         +++|++++  .+++++++++++|.+++++.
T Consensus       335 p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~~~~~~  412 (416)
T PRK09440        335 PEGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAEEVEKA  412 (416)
T ss_pred             CCCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence            4 4788888884   2467888999999999998521   1         36888654  47999999999999999887


Q ss_pred             hhc
Q 013008          447 DSN  449 (451)
Q Consensus       447 ~~~  449 (451)
                      +++
T Consensus       413 ~~~  415 (416)
T PRK09440        413 YAE  415 (416)
T ss_pred             hhc
Confidence            654

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.90  E-value=1.2e-21  Score=197.29  Aligned_cols=307  Identities=18%  Similarity=0.114  Sum_probs=191.9

Q ss_pred             cCcccccCCCCCHHHHHHHHHHHhhcccccCC-------CCCHHHHHHHHHHhhccCCC--eEEecCCHHHHHHHHHHHH
Q 013008          105 SGIAVNALGHGDADWIKAVVDQANVLTHVSNM-------YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus       105 ~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~e--~v~~~~sG~eA~~~al~~a  175 (451)
                      ++.+....||++|.+++++..++ .....+..       +..+.+.+++++++++++.+  .+.++++|+++.+.++..+
T Consensus        23 ~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~  101 (398)
T cd00613          23 SFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAA  101 (398)
T ss_pred             ccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHH
Confidence            34445567999999988877665 22111111       12234678899999988744  7888887777777777766


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEE
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aav  250 (451)
                      +...+        +++.|++.++ +|+.+...+...+...        ...+..++.     .|++++++.+.+ ++++|
T Consensus       102 ~~~~~--------~gd~Vl~~~~-~h~~~~~~~~~~~~~~--------g~~~~~v~~~~~~~~d~~~l~~~i~~-~t~~v  163 (398)
T cd00613         102 IRAYH--------KRNKVLVPDS-AHPTNPAVARTRGEPL--------GIEVVEVPSDEGGTVDLEALKEEVSE-EVAAL  163 (398)
T ss_pred             Hhccc--------CCCEEEEcCc-cCcchHHHHHHhcccC--------CcEEEEeccCCCCCcCHHHHHHhcCC-CeEEE
Confidence            53211        2666776555 7777766665543211        011222332     278999998864 58888


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccc---c-CCcccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPL---A-GGLPIG  324 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~l---g-~G~~iG  324 (451)
                      ++++++ ++|.+   .+++++|+++|++||+++|+|++|......+.   ...+  .+|+++  ++|.+   + ||+++|
T Consensus       164 iv~~~~-~~G~~---~~~l~~i~~la~~~g~~livD~~~~~~~~~~~---~~~~--~~d~~~~s~~K~~~p~g~Ggp~~g  234 (398)
T cd00613         164 MVQYPN-TLGVF---EDLIKEIADIAHSAGALVYVDGDNLNLTGLKP---PGEY--GADIVVGNLQKTGVPHGGGGPGAG  234 (398)
T ss_pred             EEECCC-CCcee---cchHHHHHHHHHhcCCEEEEEeccccccCCCC---hHHc--CCCEEEeeccccCCCCCCCCCcee
Confidence            888865 55665   35689999999999999999999853211111   1122  367764  56876   2 357889


Q ss_pred             cccccHHHHhhccCC-----------------------------CccCCCCCcHHHHHHHHHHHHHhcChHHH---HH--
Q 013008          325 AALVTEKVASAINYG-----------------------------DHGSTFAGSPLVCNAAIAVLDKISNPAFL---AS--  370 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~-----------------------------~~~~t~~~~~~~~aaa~aal~~~~~~~~~---~~--  370 (451)
                      +++.++++++.+.+.                             ....+++++++.++++.++++.+..+++.   ++  
T Consensus       235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~  314 (398)
T cd00613         235 FFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAH  314 (398)
T ss_pred             EEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            999988888765221                             11235666777777777777765443322   22  


Q ss_pred             -----HH---hCCCCcceec-ccceeEEEEecC----ChHHHHHHHHHCCceeeecC--CCCEEEEeCCCCCCHHHHHHH
Q 013008          371 -----KL---ARNPHVKDVR-GLGLIIGIEFDV----SATPVVDACRDSGLLVLTAG--KGNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       371 -----~~---~~~~~~~~v~-g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~--~~~~iri~~~~~~t~e~i~~~  435 (451)
                           +.   +.++...... .....+++.+..    ...++++.|+++|+++....  .++.+|++|++.+|+||||++
T Consensus       315 ~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~  394 (398)
T cd00613         315 LNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDAL  394 (398)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHH
Confidence                 22   2233221111 111223444432    35678999999999876531  237899999999999999999


Q ss_pred             HHHH
Q 013008          436 VEIL  439 (451)
Q Consensus       436 l~~l  439 (451)
                      ++.|
T Consensus       395 ~~~L  398 (398)
T cd00613         395 LEAL  398 (398)
T ss_pred             HHhC
Confidence            8864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.90  E-value=1e-21  Score=192.66  Aligned_cols=256  Identities=21%  Similarity=0.223  Sum_probs=177.1

Q ss_pred             HHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..++.+.++++++  .+++++++|+++++..+.+++.            ++ +|++.+|+|+.+.......         
T Consensus        49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~------------~g-~vl~~~p~y~~~~~~~~~~---------  106 (330)
T TIGR01140        49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLA------------PG-RVLVLAPTYSEYARAWRAA---------  106 (330)
T ss_pred             HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC------------CC-eEEEeCCCcHHHHHHHHHc---------
Confidence            4788888888887  5799999999999888655421            35 6999999998775432111         


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                            ++.+++++|++.+++.+++ ..+++++.|. +++|. .++.+.+++|+++|++||+++|+||+|.++...... 
T Consensus       107 ------g~~~~~~~d~~~l~~~~~~-~~~v~i~~p~-NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~-  176 (330)
T TIGR01140       107 ------GHEVVELPDLDRLPAALEE-LDVLVLCNPN-NPTGR-LIPPETLLALAARLRARGGWLVVDEAFIDFTPDASL-  176 (330)
T ss_pred             ------CCEEEEeCCHHHHHhhccc-CCEEEEeCCC-CCCCC-CCCHHHHHHHHHHhHhcCCEEEEECcccccCCccch-
Confidence                  1222333389999998853 3355566664 44454 679999999999999999999999999877432111 


Q ss_pred             cccccCCCccee---eeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----
Q 013008          300 AHEHYGIFPDIM---TLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----  370 (451)
Q Consensus       300 ~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----  370 (451)
                       ....+..++++   +|||.+| .|+|+||+++++++++.+...  ...++.++++++++.+.++   +.++.++     
T Consensus       177 -~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~--~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~  250 (330)
T TIGR01140       177 -APQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREA--LGPWTVNGPARAAGRAALA---DTAWQAATRARL  250 (330)
T ss_pred             -hhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhc--CCCCCchHHHHHHHHHHHh---chHHHHHHHHHH
Confidence             11111122333   8999999 689999999999999888643  2356678888888877776   3333222     


Q ss_pred             ---------HHhCCCCcceecccceeEEEEecCChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHH
Q 013008          371 ---------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       371 ---------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l  436 (451)
                               .++.++.+....+.|+++|+.+. ...+++++|+++||.+.|+..     .+++|++++  ...++ ++++
T Consensus       251 ~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~-~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~-~~~~  326 (330)
T TIGR01140       251 AAERARLAALLARLGGLEVVGGTALFLLVRTP-DAAALHEALARRGILIRDFDNFPGLDPRYLRFALP--TDEEN-DRLE  326 (330)
T ss_pred             HHHHHHHHHHHHhCCCceECCCCCeEEEEEcC-CHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEec--CHHHH-HHHH
Confidence                     33445544444567888888874 467899999999999998632     257888654  34444 6666


Q ss_pred             HHH
Q 013008          437 EIL  439 (451)
Q Consensus       437 ~~l  439 (451)
                      ++|
T Consensus       327 ~~l  329 (330)
T TIGR01140       327 EAL  329 (330)
T ss_pred             Hhh
Confidence            655

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.90  E-value=3.6e-21  Score=193.33  Aligned_cols=324  Identities=16%  Similarity=0.145  Sum_probs=204.9

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc-----cCCCCCHHHHHHHHHHhhcc----CCCeEEecCCHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-----SNMYYSIPQIELAKRLVACS----FADRVFFSNTGTEAN  168 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~----~~e~v~~~~sG~eA~  168 (451)
                      ...+||..+.+.  + ..++.+.+++.+.++.....     ...+....+..+++.+...+    ..+++++++|+++|+
T Consensus        33 ~~~~~l~~g~p~--~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al  109 (394)
T PRK06836         33 DNVFDFSLGNPS--V-PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGAL  109 (394)
T ss_pred             CCeEEecCcCCC--C-CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHH
Confidence            457888877542  2 25678888888776542111     11112223455666555433    277899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++.+.           .+++.|++.+|+|.++....... +.....   .+..++..   --|++++++++.+ +++
T Consensus       110 ~~~~~~l~-----------~~gd~Vli~~p~~~~~~~~~~~~-g~~v~~---v~~~~~~~---~~d~~~l~~~~~~-~~~  170 (394)
T PRK06836        110 NVALKAIL-----------NPGDEVIVFAPYFVEYRFYVDNH-GGKLVV---VPTDTDTF---QPDLDALEAAITP-KTK  170 (394)
T ss_pred             HHHHHHhc-----------CCCCEEEEcCCCCccHHHHHHHc-CCEEEE---EecCCccC---cCCHHHHHhhcCc-Cce
Confidence            99988654           16889999999998875443222 211111   11111100   0278999999965 456


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHH------hCCEEEEeccccCCCccccccc--ccccCCCcceeeeccccc-C
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDD------AGALLVFDEVQCGLGRTGYLWA--HEHYGIFPDIMTLAKPLA-G  319 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tg~gr~G~~~~--~~~~~~~pdi~t~sK~lg-~  319 (451)
                      +|++...++++|. ..+.+.+++|.++|++      ||+++|+||+|.+|-..+....  ...++...-+.+|||.++ .
T Consensus       171 ~v~~~~p~NPtG~-~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~p  249 (394)
T PRK06836        171 AVIINSPNNPTGV-VYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLP  249 (394)
T ss_pred             EEEEeCCCCCCCc-CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCc
Confidence            6666555555554 6789999999999999      8999999999988744332111  111222222347899998 7


Q ss_pred             CcccccccccHHHHhh------ccCCC-ccCCCCCcHHHHHHHHHHHHHhc-ChHHHHH------HHhCCCCcceecc-c
Q 013008          320 GLPIGAALVTEKVASA------INYGD-HGSTFAGSPLVCNAAIAVLDKIS-NPAFLAS------KLARNPHVKDVRG-L  384 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~------~~~~~-~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~------~~~~~~~~~~v~g-~  384 (451)
                      |+|+||+++++++.+.      +.... .....+.+++.+.++...++... ...+.++      .++++. +....+ .
T Consensus       250 GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~g  328 (394)
T PRK06836        250 GERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATVDVSIYKRNRDLLYDGLTELG-FECVKPQG  328 (394)
T ss_pred             ceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHhCC-CEeecCCc
Confidence            9999999998876432      11111 11224567777777776664211 1112122      333433 222333 3


Q ss_pred             ceeEEEEec-CChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          385 GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       385 G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      |+++|+.+. .+..++++.|.++||.+.|+..   ++.+||+++  .+++++++++++|.+++++.+
T Consensus       329 g~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~~~  393 (394)
T PRK06836        329 AFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAFEKLAKEYK  393 (394)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhc
Confidence            677777663 3567888889999999998742   367899765  689999999999999997653

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.2e-21  Score=192.23  Aligned_cols=305  Identities=18%  Similarity=0.158  Sum_probs=197.2

Q ss_pred             eecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-----CCeEEe
Q 013008           86 SGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFF  160 (451)
Q Consensus        86 ~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~  160 (451)
                      ++.|.+-+...|+..+|+..|..  .+| .+|.+++++.+.+.....  ..|+.....+|.+.++++++     .++|++
T Consensus         7 ~~~~~~~~~~~~~~~i~l~~~~~--~~~-~p~~~~~~~~~~~~~~~~--~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~i   81 (335)
T PRK14808          7 IAKRAYPYETEKRDRTYLALNEN--PFP-FPEDLVDEVFRRLNSDTL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSV   81 (335)
T ss_pred             hhccCcCCCCCCCceeEecCCCC--CCC-CCHHHHHHHHHHhhhhhh--hcCCCCChHHHHHHHHHHhCCCCCCcceEEE
Confidence            45666666678889999988765  565 678899999887653211  11222235566666766654     779999


Q ss_pred             cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHH
Q 013008          161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK  240 (451)
Q Consensus       161 ~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~  240 (451)
                      |+|+++++..++++.               +.|++.+|+|.++...+...+.... .   .+...+...    +..    
T Consensus        82 t~Ga~~~i~~~~~~~---------------d~v~v~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~~----~~~----  134 (335)
T PRK14808         82 GNGADEIIYVMMLMF---------------DRSVFFPPTYSCYRIFAKAVGAKFL-E---VPLTKDLRI----PEV----  134 (335)
T ss_pred             cCCHHHHHHHHHHHh---------------CcEEECCCCHHHHHHHHHHcCCeEE-E---ecCCCcCCC----Chh----
Confidence            999999999998743               2499999999888755544432211 1   111111100    111    


Q ss_pred             hcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCCCcceeeeccccc-
Q 013008          241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-  318 (451)
Q Consensus       241 ~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pdi~t~sK~lg-  318 (451)
                      .+. .....++++|.|++ |. ..+.+.+++|.    +++++||+||+|..|. ...... ...+....-+.+|||.++ 
T Consensus       135 ~~~-~~~~i~i~nP~NPT-G~-~~s~~~l~~l~----~~~~~ii~DE~Y~~f~-~~~~~~~~~~~~~vi~~~S~SK~~~l  206 (335)
T PRK14808        135 NVG-EGDVVFIPNPNNPT-GH-VFEREEIERIL----KTGAFVALDEAYYEFH-GESYVDLLKKYENLAVIRTFSKAFSL  206 (335)
T ss_pred             Hcc-CCCEEEEeCCCCCC-CC-CcCHHHHHHHH----hcCCEEEEECchhhhc-CCchHHHHHhCCCEEEEEechhhccC
Confidence            122 23344455555544 44 45666666654    5899999999998873 111111 122222333458999999 


Q ss_pred             CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc
Q 013008          319 GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL  384 (451)
Q Consensus       319 ~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~  384 (451)
                      .|+|+||+++++++++.+....  .+++.+++++.++.++++..   ++.++              .++..+ +....+.
T Consensus       207 ~GlRvG~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~  280 (335)
T PRK14808        207 AAQRIGYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHR---EIFEERTKFIVEERERMKSALREMG-YRITDSR  280 (335)
T ss_pred             cccceEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHCC-CEECCCC
Confidence            7999999999999999886433  34667888888888888632   12111              223332 3335678


Q ss_pred             ceeEEEEec-CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          385 GLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       385 G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      |.++|+.+. .+..++.+.|.++||++....  +.+|+++.   +.++.+++++.|++
T Consensus       281 g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~~~--~~~Risi~---~~~~~~~~~~~l~~  333 (335)
T PRK14808        281 GNFVFIFMEKEEKERLLEHLRAKNIAVRSFR--EGVRITIG---KREENDMILKELEV  333 (335)
T ss_pred             CeEEEEeCCCccHHHHHHHHHHCCeEEEECC--CCeEEecC---CHHHHHHHHHHHHh
Confidence            899998874 345788999999999998753  56888643   67889999888864

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.89  E-value=2.8e-21  Score=191.86  Aligned_cols=307  Identities=16%  Similarity=0.109  Sum_probs=192.2

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a  175 (451)
                      ..++||..+..  +++ .+|.+.+++.+.+.....    |+.....+|.+.++++++  .++|++++|+++++..+++++
T Consensus        22 ~~~i~l~~~~n--~~~-~~~~~~~a~~~~~~~~~~----Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l   94 (360)
T PRK07392         22 DAILDFSASIN--PLG-PPESVIAAIQSALSALRH----YPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGREL   94 (360)
T ss_pred             ccEEEeCCcCC--CCC-CCHHHHHHHHHHHHHhhc----CCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence            36889887644  455 678999998887765222    222223467777777765  789999999999999988864


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE-eeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF-VEYGNIEATRKLIQPGKTAAVFVEP  254 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~aavi~ep  254 (451)
                      .            +++.|++.+|+|.++.......+.... .   .+..++..+ ....|++.+++... .....++++|
T Consensus        95 ~------------~g~~vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~nP  157 (360)
T PRK07392         95 A------------QLRAVYLITPAFGDYRRALRAFGATVK-E---LPLPLDQPSPGLTLRLQTLPPQLT-PNDGLLLNNP  157 (360)
T ss_pred             C------------CCCeEEEECCCcHHHHHHHHHcCCeEE-E---EecccccCCcccccCHHHHHHhcc-CCCEEEEeCC
Confidence            3            467899999999888755544332111 1   111111100 00125666665442 2344555556


Q ss_pred             ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccC---CCcceeeeccccc-CCccccccccc
Q 013008          255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYG---IFPDIMTLAKPLA-GGLPIGAALVT  329 (451)
Q Consensus       255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~---~~pdi~t~sK~lg-~G~~iG~v~~~  329 (451)
                       ++++|.+. +   .++|.++|+++++ +|+||+|.+|.+.+.... ....+   ...-+.+|||.++ +|+|+||++++
T Consensus       158 -~NPTG~~~-~---~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~  231 (360)
T PRK07392        158 -HNPTGKLW-S---REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAH  231 (360)
T ss_pred             -CCCCCCCc-C---HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCC
Confidence             44455544 5   4567777888885 666999998854442111 11111   1223448999999 89999999999


Q ss_pred             HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC
Q 013008          330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS  395 (451)
Q Consensus       330 ~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~  395 (451)
                      +++++.+....  ..++.+.+++.++.++|+.   ..+.++              .+++++.+....+.|.++++.+..+
T Consensus       232 ~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl~~~~~~~  306 (360)
T PRK07392        232 PDRLQRWQQWR--DPWPVNGLAAAAAIAALAD---RDFQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFLLVQSQGS  306 (360)
T ss_pred             HHHHHHHHhhC--CCCCCCHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCCEEEEEcCCC
Confidence            99988875332  3467789999988888752   222221              2344554444456688888877555


Q ss_pred             hHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       396 ~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      ..++.+.++ ++||.+.|+..     .+++||+..   +.++.+++.+.|++.
T Consensus       307 ~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~~~l~~al~~~  356 (360)
T PRK07392        307 ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVR---TEAENQRLLEALAAI  356 (360)
T ss_pred             HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeC---CHHHHHHHHHHHHHH
Confidence            678888865 57999998742     257888644   344445555555443

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.89  E-value=1.8e-21  Score=190.93  Aligned_cols=272  Identities=14%  Similarity=0.062  Sum_probs=174.1

Q ss_pred             CCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          137 YYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       137 ~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      |+.+...+|.++++++++  .++|++++|+++++..++++ .   +        + ++|++.+|+|..+...+...+...
T Consensus        37 Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~-~---~--------~-~~vv~~~P~y~~y~~~~~~~G~~v  103 (332)
T PRK06425         37 YPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY-I---N--------V-GNIIIVEPNFNEYKGYAFTHGIRI  103 (332)
T ss_pred             CcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-h---C--------C-CcEEEeCCChHHHHHHHHHcCCeE
Confidence            555557899999999887  77899999999999998863 2   1        3 368888999988876554433221


Q ss_pred             CcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008          215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR  294 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  294 (451)
                      . .   .|... .    -.|.+.+++   .+...+++++|.| ++|. +.+.+.+++|.++|++||++||+||+|..|..
T Consensus       104 ~-~---vp~~~-~----~~~~~~l~~---~~~k~v~l~nP~N-PTG~-~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~  169 (332)
T PRK06425        104 S-A---LPFNL-I----NNNPEILNN---YNFDLIFIVSPDN-PLGN-LISRDSLLTISEICRKKGALLFIDEAFIDFVP  169 (332)
T ss_pred             E-E---EeCCc-c----cCcHHHHhh---cCCCEEEEeCCCC-CcCC-ccCHHHHHHHHHHHHHcCCEEEEecchhcccc
Confidence            1 1   11111 0    013444432   2223444455544 4454 57899999999999999999999999988843


Q ss_pred             ccccccccc---cCCCcceeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHH--H-hc--Ch
Q 013008          295 TGYLWAHEH---YGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD--K-IS--NP  365 (451)
Q Consensus       295 ~G~~~~~~~---~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~--~-~~--~~  365 (451)
                      .+.......   ++...-+.+|||+++ +|+|+||+++++++++.+...  ...+..+.+++++.. ..+  . ++  ..
T Consensus       170 ~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~--~~~~~~~~~~~~~l~-~~~~~~~~~~~~~  246 (332)
T PRK06425        170 NRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKI--TEPWSVCDPAIDFIR-SIDLDYVAKHSLD  246 (332)
T ss_pred             ccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHc--CCCCccCHHHHHHHH-HhhhHHHHHHHHH
Confidence            331111111   112223448999999 899999999999999888643  223444444433221 111  0 00  00


Q ss_pred             HHHHH------HHhCCCCccee-cccceeEEEEecCChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHH
Q 013008          366 AFLAS------KLARNPHVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELD  433 (451)
Q Consensus       366 ~~~~~------~~~~~~~~~~v-~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~  433 (451)
                      .+.++      .++++. +..+ .+.|.++++.+. +..++.+.|+++||.+.|+..     .+++|++..   +.++.+
T Consensus       247 ~~~~~r~~l~~~L~~~g-~~~~~~~~g~f~~~~~~-~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~---~~~~~~  321 (332)
T PRK06425        247 IMENERSYLINNLEAMG-FRAAGDPSANFITFMIP-DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR---RRSFNI  321 (332)
T ss_pred             HHHHHHHHHHHHHHHCC-CEECCCCCceEEEEEcC-CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC---CHHHHH
Confidence            11111      223332 2223 456888888875 578899999999999998632     257898643   788999


Q ss_pred             HHHHHHHHHH
Q 013008          434 QAVEILCKTL  443 (451)
Q Consensus       434 ~~l~~l~~~l  443 (451)
                      +++++|++++
T Consensus       322 ~l~~al~~~~  331 (332)
T PRK06425        322 KLVNALRNFL  331 (332)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=9.6e-22  Score=194.38  Aligned_cols=296  Identities=17%  Similarity=0.178  Sum_probs=193.3

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR  176 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~  176 (451)
                      ..+|+.+|-.  ++| .+|.+.      ...    .+.|+.....+|.+++++.++  .++|++++|++|++..++++..
T Consensus        29 ~~~~l~~Nen--p~~-~~~~~~------~~~----~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~   95 (351)
T PRK01688         29 GDVWLNANEY--PTA-VEFQLT------QQT----LNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC   95 (351)
T ss_pred             CceEecCCCC--CCC-CChhhc------ccc----cccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc
Confidence            3588877755  565 334321      111    133444446789999999887  7899999999999999998654


Q ss_pred             HHhhhcCCCCCCCC-ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc
Q 013008          177 KFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI  255 (451)
Q Consensus       177 ~~~~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~  255 (451)
                      .           ++ +.|++.+|+|..+...+... |.....   .+...+..    .|++++++.+. +...+++++|.
T Consensus        96 ~-----------~g~~~vli~~P~y~~y~~~~~~~-G~~~~~---v~~~~~~~----~d~~~l~~~~~-~~~lv~l~nPn  155 (351)
T PRK01688         96 E-----------PGKDAILYCPPTYGMYSVSAETI-GVEIRT---VPTLDNWQ----LDLPAIADNLD-GVKVVYVCSPN  155 (351)
T ss_pred             C-----------CCCCEEEEcCCCHHHHHHHHHHc-CCEEEE---eecCCCCC----CCHHHHHHhcc-CCcEEEEeCCC
Confidence            1           34 78999999998765433222 211111   12211111    27899988873 33344555554


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcce---eeeccccc-CCcccccccccHH
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI---MTLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi---~t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      | ++|. ..+.+.+++|.+.|++ ++++|+||+|..|.....  ........+.+   -||||++| +|+|+||++++++
T Consensus       156 N-PTG~-~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s--~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~  230 (351)
T PRK01688        156 N-PTGN-LINPQDLRTLLELTRG-KAIVVADEAYIEFCPQAS--LAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEE  230 (351)
T ss_pred             C-CCCC-CCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCCC--hHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHH
Confidence            4 4454 5688899999999986 689999999988842111  11111222343   37999998 6999999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc-eecccceeEEEEecCCh
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK-DVRGLGLIIGIEFDVSA  396 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~-~v~g~G~~~~~~~~~~~  396 (451)
                      +++.+...  ...|+.+.++++++.++|+.. ..++.++              .++.++.+. ..+..+.++++.+. +.
T Consensus       231 ~i~~l~~~--~~~~~v~~~~~~~a~~~L~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~-~~  306 (351)
T PRK01688        231 VINLLLKV--IAPYPLSTPVADIAAQALSPQ-GIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT-AS  306 (351)
T ss_pred             HHHHHHhc--cCCCCCCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC-CH
Confidence            99888643  234667777777777777521 0111111              234444332 34566788888774 56


Q ss_pred             HHHHHHHHHCCceeeecC----CCCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          397 TPVVDACRDSGLLVLTAG----KGNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~~~----~~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                      .++.+.|+++||.+.+++    ..+++|+++.   +++++++++++|
T Consensus       307 ~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~al  350 (351)
T PRK01688        307 SAVFKSLWDQGIILRDQNKQPGLSNCLRITIG---TREECQRVIDAL  350 (351)
T ss_pred             HHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHHhh
Confidence            789999999999998653    1367899754   789999999877

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.89  E-value=3e-21  Score=190.37  Aligned_cols=278  Identities=18%  Similarity=0.156  Sum_probs=185.0

Q ss_pred             HHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcC
Q 013008          142 QIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR  217 (451)
Q Consensus       142 ~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  217 (451)
                      +..+++.+....+    .+.+++++||++|+..++..+..           ++++|++.+++|+++............  
T Consensus        42 ~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~-----------~g~~vl~~~~~~~~~~~~~~~~~~~~~--  108 (350)
T cd00609          42 REAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN-----------PGDEVLVPDPTYPGYEAAARLAGAEVV--  108 (350)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC-----------CCCEEEEcCCCchhHHHHHHHCCCEEE--
Confidence            4455555554433    56899999999999999997652           578999999998876544332221110  


Q ss_pred             CCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc
Q 013008          218 SPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY  297 (451)
Q Consensus       218 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~  297 (451)
                        ..+........  .+.+.++... ..++++|++++.++++|. .++.+.+++|+++|+++|+++|+||+|+++...+.
T Consensus       109 --~i~~~~~~~~~--~~~~~~~~~~-~~~~~~v~i~~~~~~tG~-~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~  182 (350)
T cd00609         109 --PVPLDEEGGFL--LDLELLEAAK-TPKTKLLYLNNPNNPTGA-VLSEEELEELAELAKKHGILIISDEAYAELVYDGE  182 (350)
T ss_pred             --EEecccccCCc--cCHHHHHhhc-CccceEEEEECCCCCCCc-ccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCc
Confidence              00111111000  0124555544 457889999997777776 56888999999999999999999999988765554


Q ss_pred             cc----cccccCCCcceeeeccccc-CCcccccccccH-HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc--ChHHHH
Q 013008          298 LW----AHEHYGIFPDIMTLAKPLA-GGLPIGAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--NPAFLA  369 (451)
Q Consensus       298 ~~----~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~~~~~~  369 (451)
                      ..    .....+....+.+++|.++ +|+++|++++++ ++++.+.......+++.++..+.++.++|+...  .+...+
T Consensus       183 ~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  262 (350)
T cd00609         183 PPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRE  262 (350)
T ss_pred             ccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHH
Confidence            32    1122222333447899998 789999999998 888888655445567788888888888887542  111111


Q ss_pred             H----------HHhCCCCcc-eecccceeEEEEecC--ChHHHHHHHHHCCceeeecC-----CCCEEEEeCCCCCCHHH
Q 013008          370 S----------KLARNPHVK-DVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAG-----KGNVVRLVPPLIISEQE  431 (451)
Q Consensus       370 ~----------~~~~~~~~~-~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~-----~~~~iri~~~~~~t~e~  431 (451)
                      +          .+++.+... .....|.+.++.+..  ....+.+.|.++|+.+.++.     .+..+|++++..  +||
T Consensus       263 ~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~  340 (350)
T cd00609         263 RYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEE  340 (350)
T ss_pred             HHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHH
Confidence            1          233333222 244567888887743  34556666667799998763     236899988876  999


Q ss_pred             HHHHHHHHH
Q 013008          432 LDQAVEILC  440 (451)
Q Consensus       432 i~~~l~~l~  440 (451)
                      +++++++|+
T Consensus       341 i~~~~~al~  349 (350)
T cd00609         341 LEEALERLA  349 (350)
T ss_pred             HHHHHHHhh
Confidence            999999886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.89  E-value=7.6e-21  Score=189.35  Aligned_cols=292  Identities=12%  Similarity=0.067  Sum_probs=186.7

Q ss_pred             HHHHHHHHHhhcccccCC-----C-----CCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008          119 WIKAVVDQANVLTHVSNM-----Y-----YSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE  188 (451)
Q Consensus       119 v~~a~~~~~~~~~~~~~~-----~-----~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~  188 (451)
                      +.++..+++++++.++..     +     .++...++.+.++++++.+.+++++||++|+..+++.+..           
T Consensus        20 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~-----------   88 (370)
T TIGR02539        20 LTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCK-----------   88 (370)
T ss_pred             CcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhC-----------
Confidence            455566666555433211     1     1234667888899999988899999999999999987651           


Q ss_pred             CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-------CHHHHHHhcCC------CCeEEEEEccc
Q 013008          189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-------NIEATRKLIQP------GKTAAVFVEPI  255 (451)
Q Consensus       189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~------~~~aavi~ep~  255 (451)
                      +++.|++..+.++... ..+...+.            .+..++++       |+++|++.+++      .++.+|+++.+
T Consensus        89 ~gd~Vl~~~~~h~s~~-~~~~~~g~------------~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p  155 (370)
T TIGR02539        89 EGDWVVLDGLAHYTSY-VAAERAGL------------NVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHV  155 (370)
T ss_pred             CCCEEEECCcccHHHH-HHHHHcCC------------EEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECC
Confidence            5788888666654433 33233222            12233332       89999998852      25667777777


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcce--eeecccccCCcccccccccHHHH
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI--MTLAKPLAGGLPIGAALVTEKVA  333 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi--~t~sK~lg~G~~iG~v~~~~~i~  333 (451)
                      +++.|.+.+    +++|.++|++||+++|+||+|. +|..+..  ...+  .+|+  .+++|++++|.|+|+++++++++
T Consensus       156 ~~~~G~~~~----l~~i~~la~~~~~~livDea~~-~g~~~~~--~~~~--~~di~v~s~sK~~~~~g~~G~l~~~~~~i  226 (370)
T TIGR02539       156 DGEYGNLPD----AGKVAKVCREKGVPLLLNCAYT-VGRMPVS--AKEI--GADFIVGSGHKSMAASGPCGVLGMSEEWE  226 (370)
T ss_pred             CCCCccccC----HHHHHHHHHHcCCeEEEECccc-cCCcCCC--HHHc--CCCEEEeeCcccccCCCCEEEEEECHHHH
Confidence            777888777    9999999999999999999996 4332211  1112  3454  47899998777899999999999


Q ss_pred             hhccCCCccCCC--------CCcHHHHHHHHHHHHHhcC-h-HH---HHH------HHhCCCCc--ceecccceeEEEEe
Q 013008          334 SAINYGDHGSTF--------AGSPLVCNAAIAVLDKISN-P-AF---LAS------KLARNPHV--KDVRGLGLIIGIEF  392 (451)
Q Consensus       334 ~~~~~~~~~~t~--------~~~~~~~aaa~aal~~~~~-~-~~---~~~------~~~~~~~~--~~v~g~G~~~~~~~  392 (451)
                      +.+........+        .....++.++.++++...+ - .+   .+.      .++..+..  ........++.+.+
T Consensus       227 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~  306 (370)
T TIGR02539       227 DIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIGFIQLGQKPKEHDLVKFET  306 (370)
T ss_pred             hhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCCCcCceEEEEC
Confidence            987643221111        1112245555666653211 0 01   010      12222211  11133455665554


Q ss_pred             cC----------ChHHHHHHHHHCCce-eeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          393 DV----------SATPVVDACRDSGLL-VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       393 ~~----------~~~~~~~~l~~~Gv~-~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..          ....+.+.|.++||+ +.++.. +.+|+++ ..++++|+++++++|++++++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~~-~~iRis~-~~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       307 PGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQT-KYFKLSV-YGLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             CchhHHhhhhccccHHHHHHHHhCCCccccCCcc-eEEEEEe-cCCCHHHHHHHHHHHHHHHHh
Confidence            21          234688999999997 665433 6899987 468999999999999998765

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.89  E-value=2e-20  Score=188.41  Aligned_cols=318  Identities=15%  Similarity=0.143  Sum_probs=204.6

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-------HHHHHHHHHHhhccC---CCeEEecCCHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-------IPQIELAKRLVACSF---ADRVFFSNTGTE  166 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~---~e~v~~~~sG~e  166 (451)
                      +.-|+|..+      .|..++.+.+++.+.+...........+       ....++.+.++++++   .+.|++++|+++
T Consensus        16 ~~iyld~a~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~   89 (398)
T TIGR03392        16 GTVYLDSAA------TALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE   89 (398)
T ss_pred             CeEEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence            467888655      4557788999998887643211111111       224567788888887   368999999999


Q ss_pred             HHHHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCccCChhhhh---hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhc
Q 013008          167 ANEAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI  242 (451)
Q Consensus       167 A~~~al~~a~~-~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l  242 (451)
                      ++..+++.... ..        .++++||+.++.|++......   ...|....   ..+...+..    .|++++++++
T Consensus        90 ~l~~~~~~~~~~~~--------~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~---~v~~~~~~~----~~~~~l~~~i  154 (398)
T TIGR03392        90 SINLVAQSYARPRL--------QPGDEIIVSEAEHHANLIPWLMVAQQTGAKVV---KLPIGADLL----PDIRQLPELL  154 (398)
T ss_pred             HHHHHHHHhhhccC--------CCCCEEEECCcchhHHHHHHHHHHHHcCcEEE---EEecCCCCC----cCHHHHHHHh
Confidence            99999886531 01        157899999999876322111   11121110   011111110    2789999998


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCC
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGG  320 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G  320 (451)
                      .+ ++++|++..+++++|.+.+    +++|.++|++||+++|+|++|. +|..    ..+.....+|+.++|  |.+|. 
T Consensus       155 ~~-~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~gp-  223 (398)
T TIGR03392       155 TP-RTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG----PPDVQALDIDFYAFSGHKLYGP-  223 (398)
T ss_pred             cc-CceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC----CCChhhcCCCEEEEecccccCC-
Confidence            65 4677777777777787777    8999999999999999999995 3222    111123357888888  97763 


Q ss_pred             cccccccccHHHHhhccCCCccC------------------CC---CCcHHHHHHHHHHHHHhcChH---HHHH------
Q 013008          321 LPIGAALVTEKVASAINYGDHGS------------------TF---AGSPLVCNAAIAVLDKISNPA---FLAS------  370 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~------------------t~---~~~~~~~aaa~aal~~~~~~~---~~~~------  370 (451)
                      ..+|++++++++++.+.+...+.                  .|   +.|..+.+++.++++.+.+.+   ..++      
T Consensus       224 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~  303 (398)
T TIGR03392       224 TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLAD  303 (398)
T ss_pred             CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            24899999999887765321010                  01   234456666667777653322   1111      


Q ss_pred             ----HHhCCCCccee-cccceeEEEEec-CChHHHHHHHHHCCceeeecC-----------CCCEEEEeCCCCCCHHHHH
Q 013008          371 ----KLARNPHVKDV-RGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQELD  433 (451)
Q Consensus       371 ----~~~~~~~~~~v-~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------~~~~iri~~~~~~t~e~i~  433 (451)
                          .++.++.+... .....++.+.+. ....++.+.|.++||.+.++.           .++.+|+++....|++|++
T Consensus       304 ~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~  383 (398)
T TIGR03392       304 LAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVD  383 (398)
T ss_pred             HHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHH
Confidence                22344433222 123456666663 446789999999999988653           1357999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013008          434 QAVEILCKTLPVL  446 (451)
Q Consensus       434 ~~l~~l~~~l~~~  446 (451)
                      ++++.|+++++.+
T Consensus       384 ~l~~~l~~~~~~~  396 (398)
T TIGR03392       384 ALVDAVGAALELL  396 (398)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=6.2e-21  Score=187.56  Aligned_cols=302  Identities=15%  Similarity=0.141  Sum_probs=190.7

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~  173 (451)
                      .|..++||..|..  +++ .+|.+.+++.+.+.....  ..++.....+|.+.++++++  .++|++++|+++++..+++
T Consensus        16 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~   90 (337)
T PRK03967         16 EGNYRIWLDKNEN--PFD-LPEELKEEIFEELKRVPF--NRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVK   90 (337)
T ss_pred             CCCceEEecCCCC--CCC-CCHHHHHHHHHHhhcCcc--ccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHH
Confidence            4556788888754  454 568899999887754211  22333335677788888776  7899999999999987766


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                      +.             +++.|++.+|+|..+.... ...+.....   .+...+..    -|++.+++.+.+ ....+++.
T Consensus        91 ~~-------------~gd~V~v~~P~y~~~~~~~-~~~g~~~~~---v~~~~~~~----~d~~~l~~~~~~-~~~v~~~~  148 (337)
T PRK03967         91 LF-------------EGKHIVITPPTFGMYSFYA-KLNGIPVID---VPLKEDFT----IDGERIAEKAKN-ASAVFICS  148 (337)
T ss_pred             Hh-------------CCCeEEEeCCChHHHHHHH-HHcCCeEEE---eecCCCCC----cCHHHHHHhccC-CCEEEEeC
Confidence            32             2788999999997654322 222221111   11111111    267888877642 33445555


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCCCcceeeeccccc-CCcccccccccHH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      | ++++|.. ++.   ++|.++| ++++++|+||+|.+|.. ..... .+...-..-+.+|||.++ .|+|+||++++++
T Consensus       149 P-~NPtG~~-~~~---~~l~~i~-~~~~~ii~De~y~~~~~-~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~  221 (337)
T PRK03967        149 P-NNPTGNL-QPE---EEILKVL-ETGKPVVLDEAYAEFSG-KSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEE  221 (337)
T ss_pred             C-CCCCCCC-CCH---HHHHHHH-hcCCEEEEECchhhhcc-cchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHH
Confidence            6 4445554 454   4555666 47999999999988732 11111 111111223347999999 7999999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCCCCcceecccceeEEEEecCChHHHH
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARNPHVKDVRGLGLIIGIEFDVSATPVV  400 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~  400 (451)
                      +++.+....  ..++.+.+++.++.++|+.   .++..+           +.+.+... ..++.|.++|+.+     .+.
T Consensus       222 ~i~~~~~~~--~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~~~~~~-----~~~  290 (337)
T PRK03967        222 IIDALYRIK--PPFSLNILTMKIVRLALDH---YDLIEERIDYIIKERERVRRELGEY-AYPSDANFLLLKL-----DAY  290 (337)
T ss_pred             HHHHHHhhc--CCCCCCHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHhccC-cCCCCCcEEEEhH-----HHH
Confidence            988876432  3456788899998888862   222211           22222211 2345677877755     278


Q ss_pred             HHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          401 DACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       401 ~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +.|+++||.+.+...  .+.+|+++.   +.++.+++++.|+++.+.
T Consensus       291 ~~l~~~gi~v~~~~~~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~~  334 (337)
T PRK03967        291 DYLLENGIVVRKLSGRLEGHIRVTVG---KREENDEFIKALKEIKEG  334 (337)
T ss_pred             HHHHHCCEEEEeCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHHh
Confidence            889999999976532  367888644   667888888888876643

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.88  E-value=4.5e-21  Score=193.16  Aligned_cols=325  Identities=14%  Similarity=0.091  Sum_probs=192.4

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCC-CCHHHHHHHHHHhhc-----cCCCeEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMY-YSIPQIELAKRLVAC-----SFADRVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~l~~~-----~~~e~v~~~~sG~eA~  168 (451)
                      |..++|+..|..  .++ .+|.+.+++.+.+.+...  ....| +.....+|.+.++++     ...++|++|+|+++|+
T Consensus        32 ~~~~i~l~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al  108 (402)
T TIGR03542        32 SADIIRLGIGDT--TQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV  108 (402)
T ss_pred             CCCeEEcCCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence            567888888765  233 468889999888765311  00112 222234444555543     3478999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHH-HhcCCCCe
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR-KLIQPGKT  247 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le-~~l~~~~~  247 (451)
                      ...+.+ .   .        ++++|++.+|+|.++...+...+. ...... ......+..++.++-+.+. +..+..++
T Consensus       109 ~~l~~l-~---~--------~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~  174 (402)
T TIGR03542       109 FRLQSL-F---G--------SDNTVAVQDPVYPAYVDSNVMAGR-AGVLDD-DGRYSKITYLPCTKENNFIPDLPEEPKI  174 (402)
T ss_pred             HHHHHh-c---C--------CCCEEEEeCCCCcchHHHHHHcCC-cccccc-ccccceEEEeecchhhCCCCCccccCCc
Confidence            875432 2   1        578999999999988755443332 110000 0000022223321101110 01111245


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccc-cccc---CCCcceeeeccccc-CCc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWA-HEHY---GIFPDIMTLAKPLA-GGL  321 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~-~~~~---~~~pdi~t~sK~lg-~G~  321 (451)
                      ++|++...++++| .+++.+.+++|.++|++||++||+||+|..|...+. ... ....   +....+.+|||.+| .|+
T Consensus       175 ~~i~l~nP~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGl  253 (402)
T TIGR03542       175 DIIYLCSPNNPTG-TVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGV  253 (402)
T ss_pred             eEEEEeCCCCCCC-ccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCc
Confidence            5555544444555 468999999999999999999999999988743332 111 1111   12333558999997 799


Q ss_pred             ccccccccHHHH--------hhccCCCccCCC-CCcHHHHHHHHHHHHHhcChH-------HHHH------HHhCCCCcc
Q 013008          322 PIGAALVTEKVA--------SAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPA-------FLAS------KLARNPHVK  379 (451)
Q Consensus       322 ~iG~v~~~~~i~--------~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~-------~~~~------~~~~~~~~~  379 (451)
                      |+||++++++++        ..+.. ....++ +.+++++.++.++++.-....       +.++      .++.+. +.
T Consensus       254 RiG~~i~~~~l~~~~~~~~~~~~~~-~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~  331 (402)
T TIGR03542       254 RLGWTVVPKELTYADGHSVIQDWER-RQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAG-FK  331 (402)
T ss_pred             ceEEEEecHHHhhcchhhHHHHHHH-HhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcC-ce
Confidence            999999998876        22211 111223 467788887777664210000       0111      222332 22


Q ss_pred             eecc-cceeEEEEecC--ChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          380 DVRG-LGLIIGIEFDV--SATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       380 ~v~g-~G~~~~~~~~~--~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ...+ .|.++|+.+..  +..++++.|+ +.||.+.|+..     .+++|++  +..+++++++++++|.++|
T Consensus       332 ~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~~  402 (402)
T TIGR03542       332 VYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AFGKRENIVEACERIKEAL  402 (402)
T ss_pred             ecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHhhC
Confidence            2334 46788998842  5678888888 46999998631     2678886  4458999999999998753

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PLN02231 alanine transaminase

Probab=99.88  E-value=3.8e-21  Score=198.47  Aligned_cols=311  Identities=13%  Similarity=0.065  Sum_probs=192.0

Q ss_pred             CHHHHHHHHHHHhhc-c-----cccCCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCC
Q 013008          116 DADWIKAVVDQANVL-T-----HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPD  185 (451)
Q Consensus       116 ~p~v~~a~~~~~~~~-~-----~~~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~  185 (451)
                      +.++++.+.+.+... +     ++...+....++.+++++.++.+    .++|++|+|+++|+..+++++..        
T Consensus       142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~--------  213 (534)
T PLN02231        142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--------  213 (534)
T ss_pred             CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc--------
Confidence            445666666666542 1     11111223336666776666544    78999999999999999997752        


Q ss_pred             CCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEE-EEEccccCCC
Q 013008          186 SKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAA-VFVEPIQGEG  259 (451)
Q Consensus       186 ~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aa-vi~ep~~~~~  259 (451)
                        +++|.|++.+|+|.++.......+.... .   .++.++..+  .-|+++|++.++.     .++++ ++++|. +++
T Consensus       214 --~~gd~Vli~~P~Y~~y~~~~~~~g~~~v-~---~~l~~~~~~--~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~-NPT  284 (534)
T PLN02231        214 --SEKDGILCPIPQYPLYSASIALHGGTLV-P---YYLDEATGW--GLEISELKKQLEDARSKGITVRALVVINPG-NPT  284 (534)
T ss_pred             --CCCCEEEEeCCCChhHHHHHHHcCCEEE-E---EecCcccCC--CCCHHHHHHHHHHHhhcCCCeEEEEEeCCC-CCC
Confidence              1589999999999988654433332211 1   111111000  0278999988852     13554 555554 444


Q ss_pred             CccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc-cccc-ccccc----CC---Cccee---eeccccc--CCccccc
Q 013008          260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-GYLW-AHEHY----GI---FPDIM---TLAKPLA--GGLPIGA  325 (451)
Q Consensus       260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~~~-~~~~~----~~---~pdi~---t~sK~lg--~G~~iG~  325 (451)
                      | .+++.+.+++|.++|++||++||+||+|..+.+. +..+ .+...    +.   ...++   +|||.+.  .|+|+||
T Consensus       285 G-~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy  363 (534)
T PLN02231        285 G-QVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGY  363 (534)
T ss_pred             C-cCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEE
Confidence            4 4689999999999999999999999999887543 3221 11111    11   11233   7899874  5999999


Q ss_pred             ccc---cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh-------c----C-----hHHHHH------HHhCCCCcce
Q 013008          326 ALV---TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI-------S----N-----PAFLAS------KLARNPHVKD  380 (451)
Q Consensus       326 v~~---~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-------~----~-----~~~~~~------~~~~~~~~~~  380 (451)
                      +++   ++++++.+.... ..+.+.+.+.++++..+++.-       .    .     ..+.++      .++.++.+..
T Consensus       364 ~~~~~~~~~l~~~l~k~~-~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~  442 (534)
T PLN02231        364 MEVTGFTSDVREQIYKVA-SVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTC  442 (534)
T ss_pred             EEEecCCHHHHHHHHHHH-hhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence            976   688888775432 234456677787777766310       0    0     011111      3344555555


Q ss_pred             ecccceeEEE-Eec--C------------ChHHHHHHHH-HCCceeeecCC-----C-CEEEEeCCCCCCHHHHHHHHHH
Q 013008          381 VRGLGLIIGI-EFD--V------------SATPVVDACR-DSGLLVLTAGK-----G-NVVRLVPPLIISEQELDQAVEI  438 (451)
Q Consensus       381 v~g~G~~~~~-~~~--~------------~~~~~~~~l~-~~Gv~~~~~~~-----~-~~iri~~~~~~t~e~i~~~l~~  438 (451)
                      .++.|.|+.| .+.  .            ....++..|+ +.||.+.|+..     + .++|++  +..+++++++++++
T Consensus       443 ~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit--~~~~~e~l~eal~R  520 (534)
T PLN02231        443 NKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCT--ILPQEDKIPAIVSR  520 (534)
T ss_pred             cCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEE--eCCCHHHHHHHHHH
Confidence            5565555444 332  1            1223566666 56999998742     1 247775  56799999999999


Q ss_pred             HHHHHHHHh
Q 013008          439 LCKTLPVLD  447 (451)
Q Consensus       439 l~~~l~~~~  447 (451)
                      |.+++++.-
T Consensus       521 L~~~~~~~~  529 (534)
T PLN02231        521 LTEFHKSFM  529 (534)
T ss_pred             HHHHHHHHH
Confidence            999987754

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.88  E-value=2.4e-21  Score=197.51  Aligned_cols=326  Identities=13%  Similarity=0.051  Sum_probs=187.5

Q ss_pred             EEeeccCcccccCCCC-CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhc-c-C------CCeEEecCCHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVAC-S-F------ADRVFFSNTGTEANEA  170 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~-~------~e~v~~~~sG~eA~~~  170 (451)
                      .|++..|..    |.. ++.|.+ +.+++....+....+..+.++++++++.+. . .      .++|++|+|+++|+..
T Consensus       102 ~i~l~~g~p----~~~~~~~v~e-~~~~~~~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~  176 (527)
T PRK09275        102 AVSYVRDQL----GFDADEFVYE-LVDGIIGDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCY  176 (527)
T ss_pred             HHhhcCCCC----CCCCCHHHHH-HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHH
Confidence            455544433    344 444555 555553211211222233356666544332 1 1      2389999999999999


Q ss_pred             HHHHHHH--HhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          171 AIKFARK--FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       171 al~~a~~--~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ++.++..  ..        +++|+|++.+|+|..+..............  ..+..++..+.  .|.++|++++.+...+
T Consensus       177 ~~~aL~~~~ll--------~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v--~v~~~~~~~f~--~d~~~l~~~~~~~tka  244 (527)
T PRK09275        177 IFDSLKENGLL--------KAGDKIALMTPIFTPYLEIPELPRYDLEVV--HINADEENEWQ--YPDSELEKLRDPSIKA  244 (527)
T ss_pred             HHHHHhhhhcC--------CCCCEEEEeCCChHHHHHHHHHcCCCeEEE--EeecCcccCCC--CCHHHHHhhcCCCCCE
Confidence            9885321  11        279999999999988765433322111100  00111110011  2789999988654344


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHH--hCCEEEEeccccCCCccccccccccc-CCCcceeeeccccc-CCcccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHY-GIFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~-~~~pdi~t~sK~lg-~G~~iG  324 (451)
                      +++++|.|++ | .+.+++.+++|+++|++  +|++||+||+|..|.. ......... ....-+-+|||.++ .|||+|
T Consensus       245 i~l~nP~NPT-G-~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG  321 (527)
T PRK09275        245 LFLVNPSNPP-S-VAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD-DFRSLFAVLPYNTILVYSFSKYFGATGWRLG  321 (527)
T ss_pred             EEEeCCcCCc-C-CCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc-cccCHHHhCCCCEEEEeehhhhccCcHhHHh
Confidence            4555665444 4 46799999999999965  5999999999987742 111011111 11223448999998 599999


Q ss_pred             cccccHH-----HHhhc--------------------------------cCCCccCCCCCcHHHHHH-H----HHHHHHh
Q 013008          325 AALVTEK-----VASAI--------------------------------NYGDHGSTFAGSPLVCNA-A----IAVLDKI  362 (451)
Q Consensus       325 ~v~~~~~-----i~~~~--------------------------------~~~~~~~t~~~~~~~~aa-a----~aal~~~  362 (451)
                      |++++++     +++.+                                +......|.+.+.+.|.+ +    .++|+  
T Consensus       322 ~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~--  399 (527)
T PRK09275        322 VIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLD--  399 (527)
T ss_pred             hhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh--
Confidence            9999875     33322                                112234566667667665 3    23343  


Q ss_pred             cChHHHHH-----------HHhCCCC-ccee-cccceeEEEEecC------------------ChHHHHHHHHH-CCcee
Q 013008          363 SNPAFLAS-----------KLARNPH-VKDV-RGLGLIIGIEFDV------------------SATPVVDACRD-SGLLV  410 (451)
Q Consensus       363 ~~~~~~~~-----------~~~~~~~-~~~v-~g~G~~~~~~~~~------------------~~~~~~~~l~~-~Gv~~  410 (451)
                      ..+.+.+.           +.+.+.. +... ...++++++++..                  +..+|+.+|++ .||.+
T Consensus       400 ~~~~~~~~~~~~~~~Rr~~l~~~Lg~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v  479 (527)
T PRK09275        400 EEDAYKKAMKDIIRRRYKALYEGLGLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVL  479 (527)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEE
Confidence            22233322           2233321 1112 2335566666521                  34567777775 59999


Q ss_pred             eecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          411 LTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       411 ~~~~~----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      .|+..    ...+|++.. ..+++++.++.++|.+.+++..+
T Consensus       480 ~PG~~Fg~~~~~vRis~a-~~~~~~~~~~~~rl~~~l~~y~~  520 (527)
T PRK09275        480 LPGGGFGGPEWSVRVSLA-NLNEEDYAKIGKAIRKLLDEYYE  520 (527)
T ss_pred             eCchhhCCCCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHHHH
Confidence            88742    246888542 25889999999999999987653

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.88  E-value=7.8e-21  Score=194.20  Aligned_cols=285  Identities=19%  Similarity=0.122  Sum_probs=179.3

Q ss_pred             HHHHHHHHHhhcc------CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          141 PQIELAKRLVACS------FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       141 ~~~~l~~~l~~~~------~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      .+.++++++.+.+      ..++|++|+|+++++..++.+..           +++|.|++.+|+|.++........+..
T Consensus        91 LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~-----------~pGd~Vlv~~P~Y~~~~~~~~~~~g~~  159 (468)
T PLN02450         91 FKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA-----------EPGDAFLLPTPYYPGFDRDLKWRTGVE  159 (468)
T ss_pred             HHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC-----------CCCCEEEECCCCCCchHHHHhhcCCcE
Confidence            3666777766542      36789999999999999988665           278999999999988754433222221


Q ss_pred             CcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEE-EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecc
Q 013008          215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAA-VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV  288 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aa-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv  288 (451)
                      ...   .+......+.  .|++.+++.++.     .++++ ++++|.| ++| .+++.+.+++|.++|++||++||+||+
T Consensus       160 ~v~---v~~~~~~~~~--~~~~~le~~~~~~~~~~~~~k~v~l~nP~N-PTG-~~~s~e~l~~ll~~a~~~~~~iI~DE~  232 (468)
T PLN02450        160 IVP---IHCSSSNGFQ--ITESALEEAYQQAQKLNLKVKGVLITNPSN-PLG-TTTTRTELNLLVDFITAKNIHLISDEI  232 (468)
T ss_pred             EEE---EecCCccCCc--CCHHHHHHHHHHHHhcCCCeeEEEEecCCC-CCC-cccCHHHHHHHHHHHHHCCcEEEEEcc
Confidence            111   1111000000  167888877742     24554 4444544 444 467999999999999999999999999


Q ss_pred             ccCCCcccccc-c-cccc-----------CCCcceeeeccccc-CCcccccccccH-HHHhhccCCCccCCCCCcHHHHH
Q 013008          289 QCGLGRTGYLW-A-HEHY-----------GIFPDIMTLAKPLA-GGLPIGAALVTE-KVASAINYGDHGSTFAGSPLVCN  353 (451)
Q Consensus       289 ~tg~gr~G~~~-~-~~~~-----------~~~pdi~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~a  353 (451)
                      |.++-..+..+ . ....           +...-+-+|||.++ +|+|+||+++++ .+.+.+....  .....+.+++.
T Consensus       233 Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~Q~  310 (468)
T PLN02450        233 YSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS--SFGLVSSQTQY  310 (468)
T ss_pred             ccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh--hcCCCCHHHHH
Confidence            98764444221 1 1111           11112448999998 799999999974 4555554221  11235778888


Q ss_pred             HHHHHHHHhcC-hHHHHH--------------HHhCCCCcceecc-cceeEEEEecC--------ChHHHHHHHHH-CCc
Q 013008          354 AAIAVLDKISN-PAFLAS--------------KLARNPHVKDVRG-LGLIIGIEFDV--------SATPVVDACRD-SGL  408 (451)
Q Consensus       354 aa~aal~~~~~-~~~~~~--------------~~~~~~~~~~v~g-~G~~~~~~~~~--------~~~~~~~~l~~-~Gv  408 (451)
                      ++.++|+.-.- ..++++              .++.+. +....+ .|+++|+.+..        ...++.+.|++ +||
T Consensus       311 a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~g-i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV  389 (468)
T PLN02450        311 LLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAG-IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKL  389 (468)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCE
Confidence            88877752110 012221              223332 222333 47788888731        12346677764 799


Q ss_pred             eeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          409 LVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       409 ~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+.|+..     .+++|++.+. .+++++++++++|.+++.+..
T Consensus       390 ~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        390 NISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             EEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence            9998742     3578885443 578999999999999987654

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.88  E-value=6.1e-21  Score=187.78  Aligned_cols=306  Identities=17%  Similarity=0.131  Sum_probs=191.7

Q ss_pred             eeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhh
Q 013008          102 DLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRH  181 (451)
Q Consensus       102 D~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~  181 (451)
                      ||+|..+   +| .+|.+.+++.+.+...   ..+++.....+++++++++++.+.++++++|++|+..+++.+.     
T Consensus         1 ~~~~~~~---~~-~~~~v~~a~~~~~~~~---~~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~-----   68 (338)
T cd06502           1 DFRSDTV---TG-PTPEMLEAMAAANVGD---DVYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHT-----   68 (338)
T ss_pred             CcccccC---CC-CCHHHHHHHHhcccCC---cccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhc-----
Confidence            6777555   77 8899999998865321   1223455688999999999987789999999999999998654     


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhh--hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC------CCeEEEEEc
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP------GKTAAVFVE  253 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~------~~~aavi~e  253 (451)
                            .+++.|++.+++|......  ...+.+.....   .+...     ...|+++|++++.+      .++++|+++
T Consensus        69 ------~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~-----~~~d~~~l~~~i~~~~~~~~~~~~~v~l~  134 (338)
T cd06502          69 ------QPGGSVICHETAHIYTDEAGAPEFLSGVKLLP---VPGEN-----GKLTPEDLEAAIRPRDDIHFPPPSLVSLE  134 (338)
T ss_pred             ------CCCCeEEEecCcceeeecCCcHHHHcCceEEe---ecCCC-----CcCCHHHHHHHhhccCCCcCCcceEEEEE
Confidence                  1578888877765432211  11112211111   01110     01388999999863      246677776


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC--CcccccccccccCCCccee--eecccccCCccccc-ccc
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGA-ALV  328 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~-v~~  328 (451)
                      .++++|| + .+.+.+++|+++|++||+++|+||+|..+  +..|.  ........+|++  +++|.++.  +.|+ +++
T Consensus       135 ~p~n~g~-~-~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~--~~g~~~~~  208 (338)
T cd06502         135 NTTEGGT-V-YPLDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA--PVGAVVVG  208 (338)
T ss_pred             eecCCcc-c-cCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC--ccceEEEC
Confidence            6555544 3 38888999999999999999999997422  11121  111222245554  67898863  3355 457


Q ss_pred             cHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecccceeEEEEecCC-
Q 013008          329 TEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRGLGLIIGIEFDVS-  395 (451)
Q Consensus       329 ~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~~-  395 (451)
                      ++++++.+...  ..+++++.+++.++++.++|+.-......++          .++.++. ......+.+..+.+... 
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~v~~~~~~  287 (338)
T cd06502         209 NRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGG-LESEVQTNIVLLDPVEAN  287 (338)
T ss_pred             CHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCC-CcccccCCeEEEecCCcc
Confidence            88888877543  2234566677888888877763101111111          2222332 11223444555554311 


Q ss_pred             --hHHHHHHHH---HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          396 --ATPVVDACR---DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       396 --~~~~~~~l~---~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                        ..++.+.+.   ++|+++.+.+. +.+|++|++.++++|++++++++++
T Consensus       288 ~~~~~l~~~l~~~~~~gi~~~~~~~-~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         288 AVFVELSKEAIERRGEGVLFYAWGE-GGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HHHHHHHHHHHHhhhCCEEEEecCC-CeEEEEeecCCCHHHHHHHHHHHhc
Confidence              223344443   67999988765 7899999999999999999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.88  E-value=1.2e-20  Score=190.26  Aligned_cols=280  Identities=12%  Similarity=0.086  Sum_probs=173.7

Q ss_pred             HHHHHHHHHhhcc----CCCeEE--ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          141 PQIELAKRLVACS----FADRVF--FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       141 ~~~~l~~~l~~~~----~~e~v~--~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      .++++++++.+..    ..++|+  .|++|++|+..++.+++.+..        ++|.|++.+|+|+++.......+...
T Consensus        77 lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~--------~Gd~Vlv~~P~y~~~~~~~~~~G~~~  148 (404)
T PTZ00376         77 FIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLP--------AGTTVYVSNPTWPNHVNIFKSAGLNV  148 (404)
T ss_pred             HHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHcCCce
Confidence            3555555554332    256788  488999999999886655543        68999999999999876544433222


Q ss_pred             CcCCCCcCCCCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                      . .   .++.++..+  --|++.+++.++.  .+..++++...++++| .+++.+.+++|.++|++||+++|+||+|.+|
T Consensus       149 ~-~---v~l~~~~~~--~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~  221 (404)
T PTZ00376        149 K-E---YRYYDPKTK--GLDFDGMLEDLRTAPNGSVVLLHACAHNPTG-VDPTEEQWKEIADVMKRKNLIPFFDMAYQGF  221 (404)
T ss_pred             e-e---ccccCcccC--CcCHHHHHHHHHhCCCCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEehhhcCc
Confidence            1 1   121110000  0178899888852  2334454444444445 4679999999999999999999999999887


Q ss_pred             Ccccc---c---ccccc-cCCCcceeeeccccc-CCcccccc---cccHHHHhhccCC---CccCCC-CCcHHHHHHHHH
Q 013008          293 GRTGY---L---WAHEH-YGIFPDIMTLAKPLA-GGLPIGAA---LVTEKVASAINYG---DHGSTF-AGSPLVCNAAIA  357 (451)
Q Consensus       293 gr~G~---~---~~~~~-~~~~pdi~t~sK~lg-~G~~iG~v---~~~~~i~~~~~~~---~~~~t~-~~~~~~~aaa~a  357 (451)
                      ...+.   .   ..... .....-+.+|||.++ .|+|+||+   ++++++++.+...   ....++ +.+++++.++.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~  301 (404)
T PTZ00376        222 ASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADR  301 (404)
T ss_pred             cCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHH
Confidence            54331   1   11111 111233458999999 79999998   5787755543211   112333 346788888887


Q ss_pred             HHHHhc-ChHH---H--------HH------HHhCCC---Cccee-cccceeEEEEecCChHHHHHHHHHC-CceeeecC
Q 013008          358 VLDKIS-NPAF---L--------AS------KLARNP---HVKDV-RGLGLIIGIEFDVSATPVVDACRDS-GLLVLTAG  414 (451)
Q Consensus       358 al~~~~-~~~~---~--------~~------~~~~~~---~~~~v-~g~G~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~  414 (451)
                      +|+.-. .+.+   .        ++      .++.+.   ..... +..|+++|+.+   ..+++++|+++ ||++.|++
T Consensus       302 ~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~---~~~~~~~L~~~~~v~v~p~~  378 (404)
T PTZ00376        302 ILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGL---TKEQVERLIEKYHIYLLDNG  378 (404)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCC---CHHHHHHHHHhCCEeecCCC
Confidence            775210 0111   1        11      122221   11122 23466666655   35788889877 99998862


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          415 KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       415 ~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                           |++.+. .+.+++++++++|++++.
T Consensus       379 -----Ris~~~-~~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        379 -----RISVAG-LTSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             -----eEEEec-cCHHhHHHHHHHHHHHHh
Confidence                 776543 799999999999998875

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.88  E-value=1.2e-20  Score=191.48  Aligned_cols=281  Identities=18%  Similarity=0.176  Sum_probs=179.3

Q ss_pred             HHHHHHHHHhhccC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          141 PQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       141 ~~~~l~~~l~~~~~------~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      .+.++++.+.+.++      +++|++|+|+++|++.++.++.           +++|.|++.+|.|.++........+..
T Consensus       100 LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~-----------~pGD~Vlv~~P~Y~~f~~~~~~~~g~~  168 (447)
T PLN02607        100 FRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA-----------DPGDALLVPTPYYPGFDRDLRWRTGVK  168 (447)
T ss_pred             HHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC-----------CCCCEEEEcCCCCcchHHHHHhcCCcE
Confidence            36667777765432      5789999999999999888654           278999999999998864432222221


Q ss_pred             CcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEEEEE-ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecc
Q 013008          215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV  288 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aavi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv  288 (451)
                      ...   .+......+  .-|+++++++++.     .+++++++ +|.| +.| .+++++.+++|.++|++|++.||+||+
T Consensus       169 vv~---v~~~~~~~f--~~~~~~le~a~~~a~~~~~~vk~lll~nP~N-PtG-~~~s~e~l~~l~~~~~~~~i~lI~DEi  241 (447)
T PLN02607        169 IVP---IHCDSSNNF--QVTPQALEAAYQEAEAANIRVRGVLITNPSN-PLG-ATVQRSVLEDILDFVVRKNIHLVSDEI  241 (447)
T ss_pred             EEE---EeCCCCCCC--cCCHHHHHHHHHHHHHhCCCeeEEEEeCCCC-CcC-cccCHHHHHHHHHHHHHCCCEEEEecc
Confidence            111   011111000  0278888888752     35555554 4544 444 468999999999999999999999999


Q ss_pred             ccCCCccccccc-c-c---ccCC-C-cc----eeeeccccc-CCcccccccc-cHHHHhhccCCCccCCC-CCcHHHHHH
Q 013008          289 QCGLGRTGYLWA-H-E---HYGI-F-PD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTF-AGSPLVCNA  354 (451)
Q Consensus       289 ~tg~gr~G~~~~-~-~---~~~~-~-pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~-~~~~~~~aa  354 (451)
                      |.++-..+..+. . +   ..+. . ++    +-+|||.+| +|+|+|++++ ++++++.+...   ..+ ..+.+++.+
T Consensus       242 Ya~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~---~~~~~~s~~~q~~  318 (447)
T PLN02607        242 YSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM---SSFTLVSSQTQHL  318 (447)
T ss_pred             ccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHH---hhcCCCCHHHHHH
Confidence            987433222111 1 1   1110 1 22    237899998 7999999998 67777766432   222 346667777


Q ss_pred             HHHHHHHhcChHHH----HH--------------HHhCCCCcceecc-cceeEEEEecC--------ChHHHHHHHHH-C
Q 013008          355 AIAVLDKISNPAFL----AS--------------KLARNPHVKDVRG-LGLIIGIEFDV--------SATPVVDACRD-S  406 (451)
Q Consensus       355 a~aal~~~~~~~~~----~~--------------~~~~~~~~~~v~g-~G~~~~~~~~~--------~~~~~~~~l~~-~  406 (451)
                      +.+.|+   ++++.    +.              .++.+ .+..+++ .|+++|+++..        ...++.+++++ .
T Consensus       319 ~~~~L~---d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~  394 (447)
T PLN02607        319 LASMLS---DEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREV  394 (447)
T ss_pred             HHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhC
Confidence            666654   33222    11              22222 2222333 48899998831        12467777775 6


Q ss_pred             CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          407 GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       407 Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ||.+.|+..     .+++|++.+. .++++++++++||.+++++-+
T Consensus       395 gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~~~  439 (447)
T PLN02607        395 KLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDRRK  439 (447)
T ss_pred             CEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHHH
Confidence            999998631     3678885442 479999999999999997654

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.88  E-value=2.7e-20  Score=185.65  Aligned_cols=300  Identities=16%  Similarity=0.108  Sum_probs=191.4

Q ss_pred             CCCHHHHHHHHHHHhhcccccCCCCCH--HHHHHHHHHhhccCC--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 013008          114 HGDADWIKAVVDQANVLTHVSNMYYSI--PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP  189 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~--e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~  189 (451)
                      +.+|.+.+++.+++......+..++..  ...+++++++++++.  +.+++++||++|+..+++.++....       .+
T Consensus        31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~-------~~  103 (371)
T PRK13520         31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAK-------AE  103 (371)
T ss_pred             CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhcc-------CC
Confidence            688999999999887532222222222  247888999998883  4688999999999999998764311       13


Q ss_pred             CceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCcccc
Q 013008          190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA  264 (451)
Q Consensus       190 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~  264 (451)
                      +++||+.++.+..+...+ ...|.            .+..+|.     .|+++|++.+.++....+++.+ ++++|.+.+
T Consensus       104 ~~~vl~~~~~h~s~~~~~-~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~-~~~tG~~~~  169 (371)
T PRK13520        104 KPNIVVPESAHFSFDKAA-DMLGV------------ELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAG-TTELGQVDP  169 (371)
T ss_pred             CceEEecCcchHHHHHHH-HHcCc------------eEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcC-CcCCcccCC
Confidence            678888887765433222 11111            1122221     2899999999754334444444 456677776


Q ss_pred             CHHHHHHHHHHHHHhCCEEEEeccccCCCc----ccccccccccCCCcceeeec--ccccCCcccccccc-cHHHHhhcc
Q 013008          265 TKEFLQFLRDACDDAGALLVFDEVQCGLGR----TGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALV-TEKVASAIN  337 (451)
Q Consensus       265 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr----~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~-~~~i~~~~~  337 (451)
                          +++|.++|++||+++|+||+|+++..    .+..+....  ...|.+++|  |...+|+|+|+++. ++++++.+.
T Consensus       170 ----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~--~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~  243 (371)
T PRK13520        170 ----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL--PGVDSITIDPHKMGLAPIPAGGILFRDESYLDALA  243 (371)
T ss_pred             ----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC--CCCceEEECCccccCccCCceEEEEcCHHHHHhhc
Confidence                99999999999999999999986521    111111111  134655543  64444688987775 566776653


Q ss_pred             CCC--c--------cCCCCCcHHHHHHHHHHHHHhcChHH---HHH-------H---HhCCCCcc-eecccceeEEEEec
Q 013008          338 YGD--H--------GSTFAGSPLVCNAAIAVLDKISNPAF---LAS-------K---LARNPHVK-DVRGLGLIIGIEFD  393 (451)
Q Consensus       338 ~~~--~--------~~t~~~~~~~~aaa~aal~~~~~~~~---~~~-------~---~~~~~~~~-~v~g~G~~~~~~~~  393 (451)
                      ...  .        .+|.  ++..++++.++|+.+..+++   .++       +   ++... +. .+.....++.+.+.
T Consensus       244 ~~~~~~~~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~v~~~~~  320 (371)
T PRK13520        244 VDTPYLTSKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERG-FEPVIEPVLNIVAFDDP  320 (371)
T ss_pred             ccCccccCCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCC-CEEecCCCceEEEEecC
Confidence            210  0        1122  34457778888887654443   222       1   12222 22 22333445556554


Q ss_pred             CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          394 VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       394 ~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                       +..++.+.|.++||.+.++..+..+|++++..+|++|++++++.|+++++
T Consensus       321 -~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        321 -NPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             -CHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence             57789999999999998765457899988878899999999999998765

>PRK10534 L-threonine aldolase; Provisional

Probab=99.88  E-value=5.5e-21  Score=187.80  Aligned_cols=307  Identities=17%  Similarity=0.160  Sum_probs=195.7

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC-CCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF  178 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~  178 (451)
                      +|||.++..   -| .+|.+.+|+.+.....    ..| +.+...+|++.|+++++.+.+++++||++++..++.+..  
T Consensus         1 ~~~~~~~~~---~~-p~~~~~~a~~~~~~~~----~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~--   70 (333)
T PRK10534          1 MIDLRSDTV---TR-PSRAMLEAMMAAPVGD----DVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHC--   70 (333)
T ss_pred             CcccccccC---CC-CCHHHHHHHHhccCCC----cccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhc--
Confidence            478888766   34 7899999987744321    223 566789999999999998888899999999988887553  


Q ss_pred             hhhcCCCCCCCCceEEEEcCCccCChh-h-hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC-----CeEEEE
Q 013008          179 QRHSNPDSKEPATEFVSFTNSFHGRTM-G-ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KTAAVF  251 (451)
Q Consensus       179 ~~~~~~~~~~~~~~ii~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~aavi  251 (451)
                               .++++|++..++|.-... . .....+.....   .+...+.    ..|+++|++++.++     ++++|+
T Consensus        71 ---------~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~d~~~l~~~i~~~~~~~~~~~lv~  134 (333)
T PRK10534         71 ---------ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQP---IDAAADG----TLPLDKVAAKIKPDDIHFARTRLLS  134 (333)
T ss_pred             ---------CCCCeeEEechhhhhHhcCCchHHhcCceEEe---ecCCCCC----CCCHHHHHHhhcccCcCcccceEEE
Confidence                     157888887766632111 1 11111000000   0111111    12789999988642     355666


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc---cccccccccCCCcc--eeeecccccCCcccc-c
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT---GYLWAHEHYGIFPD--IMTLAKPLAGGLPIG-A  325 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~---G~~~~~~~~~~~pd--i~t~sK~lg~G~~iG-~  325 (451)
                      ++.+ + +|. +.+.+.+++|.++|++||++||+||+|. |+..   +...  ......+|  +++|||+++  +++| +
T Consensus       135 l~np-~-~G~-v~~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~--~~~~~~~~~~~~s~SK~~~--~~~G~~  206 (333)
T PRK10534        135 LENT-H-NGK-VLPREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCEL--KEITQYCDSFTICLSKGLG--TPVGSL  206 (333)
T ss_pred             EecC-C-CCe-ecCHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCH--HHHHhcCCEEEEEeEcCCC--Ccccce
Confidence            6532 2 355 5688889999999999999999999976 4221   2111  11101123  458999875  3578 5


Q ss_pred             ccccHHHHhhccCCCc--cCCCCCcHHHHHHHHHHHHHhc-C-hHHHH---H---HHhCCCCcceecccceeEEEEec-C
Q 013008          326 ALVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKIS-N-PAFLA---S---KLARNPHVKDVRGLGLIIGIEFD-V  394 (451)
Q Consensus       326 v~~~~~i~~~~~~~~~--~~t~~~~~~~~aaa~aal~~~~-~-~~~~~---~---~~~~~~~~~~v~g~G~~~~~~~~-~  394 (451)
                      +++++++++.++....  ...++.+.+.++++.++|+... . ....+   .   .+++++ +...++.+.++++.++ .
T Consensus       207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~~nfv~~~~~~~  285 (333)
T PRK10534        207 LVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQLREAG-ADVMRQDTNMLFVRVGEE  285 (333)
T ss_pred             EEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC-CccCCCCceEEEEECCch
Confidence            7789999888764322  1123334566777777776311 0 11111   1   223332 3334456888888774 2


Q ss_pred             ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          395 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       395 ~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ....+.+.|.++||++.++   ..+|+..++.+|+|++++++++|++.+.
T Consensus       286 ~~~~~~~~l~~~gi~v~~~---~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        286 QAAALGEYMRERNVLINAS---PIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             hHHHHHHHHHHcCeeecCC---ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            4567888899999999875   3478877777899999999999987663

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.87  E-value=2.6e-20  Score=191.14  Aligned_cols=281  Identities=16%  Similarity=0.120  Sum_probs=179.4

Q ss_pred             HHHHHHHHHhhcc------CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          141 PQIELAKRLVACS------FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       141 ~~~~l~~~l~~~~------~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      .+.++++++.+..      .+++|++|+|+++|++.+++++.           +++|.|++.+|+|.++........|..
T Consensus        99 LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~-----------~pGD~Vlv~~P~Y~~~~~~~~~~~G~~  167 (496)
T PLN02376         99 FRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA-----------DPGDVFLIPSPYYAAFDRDLRWRTGVE  167 (496)
T ss_pred             HHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC-----------CCCCEEEECCCCccchHHHHHhhCCCE
Confidence            3666777666542      36899999999999999999765           278999999999999865432222222


Q ss_pred             CcCCCCcCCCC--CeeEeeCCCHHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEec
Q 013008          215 HYRSPFEPVMP--GVNFVEYGNIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE  287 (451)
Q Consensus       215 ~~~~~~~~~~~--~~~~~~~~d~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE  287 (451)
                      ...   .+...  +..    -|+++++++++     ..++++|++...++++| .+++.+.+++|.++|++||++||+||
T Consensus       168 vv~---v~~~~~~~~~----~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG-~~~s~e~l~~L~~~a~~~~i~lI~DE  239 (496)
T PLN02376        168 IIP---VPCSSSDNFK----LTVDAADWAYKKAQESNKKVKGLILTNPSNPLG-TMLDKDTLTNLVRFVTRKNIHLVVDE  239 (496)
T ss_pred             EEE---EeCCCCccCc----CCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC-ccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence            111   11110  111    16777765532     23566555443344445 46799999999999999999999999


Q ss_pred             cccCCCcccccc-cc-cc---cC---CCcc----eeeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHH
Q 013008          288 VQCGLGRTGYLW-AH-EH---YG---IFPD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCN  353 (451)
Q Consensus       288 v~tg~gr~G~~~-~~-~~---~~---~~pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~a  353 (451)
                      +|..+.+.+..+ .. +.   ++   ..++    +.+|||.+| .|+|+||+++ ++.+.+.+....  .....+.+++.
T Consensus       240 iY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~--~~~~vs~~~Q~  317 (496)
T PLN02376        240 IYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS--SFGLVSSQTQL  317 (496)
T ss_pred             CccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh--hcCCCCHHHHH
Confidence            998864444322 11 11   01   1233    237999998 7999999998 466666543221  12235677887


Q ss_pred             HHHHHHHHhcChHHHHH------------------HHhCCCCcceec-ccceeEEEEecC---------ChHHHHHHHHH
Q 013008          354 AAIAVLDKISNPAFLAS------------------KLARNPHVKDVR-GLGLIIGIEFDV---------SATPVVDACRD  405 (451)
Q Consensus       354 aa~aal~~~~~~~~~~~------------------~~~~~~~~~~v~-g~G~~~~~~~~~---------~~~~~~~~l~~  405 (451)
                      ++.+.|+   +..+.++                  .++.. .+..+. ..|+++|+++..         ...++++.+++
T Consensus       318 a~~~~L~---d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~  393 (496)
T PLN02376        318 MLASMLS---DDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIID  393 (496)
T ss_pred             HHHHHhC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHH
Confidence            7776664   3333211                  12222 222233 346899998831         12567787876


Q ss_pred             -CCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          406 -SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       406 -~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                       .||.+.|+..     .+++|+++.. .+++++++++++|.+++.+.+
T Consensus       394 ~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~~~  440 (496)
T PLN02376        394 KVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVSKNK  440 (496)
T ss_pred             cCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHHHhh
Confidence             4999998631     3578886542 578999999999999986543

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.87  E-value=1.2e-20  Score=192.23  Aligned_cols=329  Identities=13%  Similarity=0.093  Sum_probs=186.8

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHH-HHhhccC-----CC--eEEecCCHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAK-RLVACSF-----AD--RVFFSNTGTEANEAA  171 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~-----~e--~v~~~~sG~eA~~~a  171 (451)
                      .|++..|.    .|..+|+++.++.+.+....+.......+..+++++ .+.+.++     .+  +|++|+|+++|+..+
T Consensus        96 ~i~l~~g~----p~~~~~~~~~~~~~~~~~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~  171 (521)
T TIGR03801        96 IISYVIDQ----LGFDPDAFLYEMCDGIIGDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYI  171 (521)
T ss_pred             HHhhcCCC----CCCCCCHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence            34554443    344556666776666532111111122233444443 4444321     33  799999999999999


Q ss_pred             HHHHHH--HhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCC-Ce-eEeeCCCHHHHHHhcCCCC
Q 013008          172 IKFARK--FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMP-GV-NFVEYGNIEATRKLIQPGK  246 (451)
Q Consensus       172 l~~a~~--~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~d~~~le~~l~~~~  246 (451)
                      +.++..  ..        +++|+|++.+|+|.++........ +......+..+... +. .+.  -|.+++++++.++.
T Consensus       172 ~~~l~~~~ll--------~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~--~d~~~l~~~~~~~~  241 (521)
T TIGR03801       172 FDSLKANELL--------KKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQ--YPDKELEKLRDPSI  241 (521)
T ss_pred             HHHHhHhhcC--------CCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCC--CCHHHHHHhcCCCC
Confidence            886321  11        268999999999988765433221 11111000000000 00 010  17789998776533


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHh--CCEEEEeccccCCCccccccccccc-CCCcceeeeccccc-CCcc
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHY-GIFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~-~~~pdi~t~sK~lg-~G~~  322 (451)
                      .++++++|.|++ | .+.+++.+++|.++|++|  |++||+||+|..|.. ......... +...-+.+|||.++ .|||
T Consensus       242 kai~l~nP~NPT-G-~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~~~sl~~~~~~~vI~v~SfSK~fg~~G~R  318 (521)
T TIGR03801       242 KALFVVNPSNPP-S-VAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD-DFRSLFAELPYNTIGVYSFSKYFGATGWR  318 (521)
T ss_pred             cEEEEeCCCCCC-C-CCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc-cccchhhhCCCCEEEEEcchhhccCchhh
Confidence            444556665544 4 467999999999999987  999999999987742 111011111 11222447999998 6999


Q ss_pred             cccccccHH-HHh------------hc------------------------cCCCccCCCCCcHHHHH-----HHHHHHH
Q 013008          323 IGAALVTEK-VAS------------AI------------------------NYGDHGSTFAGSPLVCN-----AAIAVLD  360 (451)
Q Consensus       323 iG~v~~~~~-i~~------------~~------------------------~~~~~~~t~~~~~~~~a-----aa~aal~  360 (451)
                      +||++++++ +++            .+                        +......|.+.+.+.|.     ++.++++
T Consensus       319 lG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~  398 (521)
T TIGR03801       319 LGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMD  398 (521)
T ss_pred             hhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhc
Confidence            999998754 221            11                        11112344555555554     2333333


Q ss_pred             HhcChHHHHH-----------HHhCCCC-ccee-cccceeEEEEecC------------------ChHHHHHHHHH-CCc
Q 013008          361 KISNPAFLAS-----------KLARNPH-VKDV-RGLGLIIGIEFDV------------------SATPVVDACRD-SGL  408 (451)
Q Consensus       361 ~~~~~~~~~~-----------~~~~~~~-~~~v-~g~G~~~~~~~~~------------------~~~~~~~~l~~-~Gv  408 (451)
                        ..+.+.+.           +.+.+.. +... ...|.++++++..                  +..+++.+|++ .||
T Consensus       399 --~~~~y~~~~~~~~~~R~~~l~~~Lg~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV  476 (521)
T TIGR03801       399 --KENAYKAETKDICRRREKLLFRGLGLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGI  476 (521)
T ss_pred             --cchhHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCE
Confidence              12333322           2233321 1112 3345677777631                  34567777775 599


Q ss_pred             eeeecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          409 LVLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       409 ~~~~~~~----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      .+.|+..    ...+|+++. ..+++++.++.++|.+.+++..+
T Consensus       477 ~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~~~~  519 (521)
T TIGR03801       477 VLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDEYYE  519 (521)
T ss_pred             EEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9998742    246888652 37899999999999999987643

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.87  E-value=1.2e-19  Score=182.76  Aligned_cols=319  Identities=14%  Similarity=0.136  Sum_probs=203.8

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC-------CHHHHHHHHHHhhccC---CCeEEecCCHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY-------SIPQIELAKRLVACSF---ADRVFFSNTGTE  166 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~---~e~v~~~~sG~e  166 (451)
                      +.-|+|..+      .|..++.+.+++.+.++..........       .....++.+.++++++   .+.|++++|+++
T Consensus        19 ~~~yld~a~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~   92 (401)
T PRK10874         19 AGVYLDSAA------TALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE   92 (401)
T ss_pred             ceEEEeCCc------ccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence            457888655      445678899999888865321111111       2225677788888887   457999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh---hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ  243 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  243 (451)
                      ++..+++.+..-.       ..++++||+.++.|++......   ...|.....   .+...+.    ..|++++++.+.
T Consensus        93 ~i~~~~~~~~~~~-------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~---v~~~~~~----~~d~~~l~~~i~  158 (401)
T PRK10874         93 SINLVAQSYARPR-------LQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVK---LPLGADR----LPDVDLLPELIT  158 (401)
T ss_pred             HHHHHHHHhhhcc-------CCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEE---EecCCCC----cCCHHHHHHhcC
Confidence            9999988653100       0157899999999876321111   111211100   1111111    127899999996


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCc
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGL  321 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~  321 (451)
                      + ++++|++..+++.+|.+.+    +++|.++|+++|+++|+|++|. +|...    .+...+.+|+.++|  |.+|. .
T Consensus       159 ~-~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp-~  227 (401)
T PRK10874        159 P-RTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP----ADVQALDIDFYAFSGHKLYGP-T  227 (401)
T ss_pred             c-CcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc----CCchhcCCCEEEEecccccCC-C
Confidence            5 5667777777777787777    8999999999999999999995 33221    11122347776655  96653 2


Q ss_pred             ccccccccHHHHhhccCCCcc------------------CCC---CCcHHHHHHHHHHHHHhcChHH---HHH-------
Q 013008          322 PIGAALVTEKVASAINYGDHG------------------STF---AGSPLVCNAAIAVLDKISNPAF---LAS-------  370 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~~~~------------------~t~---~~~~~~~aaa~aal~~~~~~~~---~~~-------  370 (451)
                      .+|++++++++++.+.+...+                  ..|   +.|..++++..++++.+.+.++   .++       
T Consensus       228 G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~  307 (401)
T PRK10874        228 GIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATL  307 (401)
T ss_pred             ccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            368888999988876532100                  001   2344566666677766533211   111       


Q ss_pred             ---HHhCCCCcceec-ccceeEEEEec-CChHHHHHHHHHCCceeeecC-----------CCCEEEEeCCCCCCHHHHHH
Q 013008          371 ---KLARNPHVKDVR-GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQELDQ  434 (451)
Q Consensus       371 ---~~~~~~~~~~v~-g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------~~~~iri~~~~~~t~e~i~~  434 (451)
                         .++++|.+..+. ..+.++.+.++ ....++.+.|.++||.+.++.           ..+.+|+++..-+|++|+++
T Consensus       308 l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~  387 (401)
T PRK10874        308 AEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDA  387 (401)
T ss_pred             HHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHH
Confidence               223454443232 33456666663 346788888999999987643           12679999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013008          435 AVEILCKTLPVL  446 (451)
Q Consensus       435 ~l~~l~~~l~~~  446 (451)
                      +++.|+++++.+
T Consensus       388 ll~al~~~~~~~  399 (401)
T PRK10874        388 LVNAVDRALELL  399 (401)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=1.7e-20  Score=186.28  Aligned_cols=276  Identities=17%  Similarity=0.181  Sum_probs=180.8

Q ss_pred             HHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCccCChhhhhhccCCCCcCC
Q 013008          142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRS  218 (451)
Q Consensus       142 ~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~  218 (451)
                      ..+|.+.++++++  .++|++++|+++++..++++...           ++ +.|++.+|+|..+...+ ...|..... 
T Consensus        61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~-----------~g~~~vlv~~p~y~~~~~~~-~~~g~~~~~-  127 (364)
T PRK04781         61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCV-----------PGRDAVLVTPPVFGMYAVCA-RLQNAPLVE-  127 (364)
T ss_pred             HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcC-----------CCCCeEEEcCCChHHHHHHH-HHcCCEEEE-
Confidence            5677788888776  67899999999999999986541           35 78999999885443322 222211111 


Q ss_pred             CCcCCC-CCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc
Q 013008          219 PFEPVM-PGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY  297 (451)
Q Consensus       219 ~~~~~~-~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~  297 (451)
                        .+.. ++..+  ..|++++++.+...++.+|++...++++|. ..+.+.++++.+.|+ +++++|+||+|..|.....
T Consensus       128 --v~~~~~~~~~--~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~-~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~  201 (364)
T PRK04781        128 --VPLVDGADGF--HADVPAIVAAALASNAKLVFLCSPSNPAGS-AIALDQIERALQALQ-GKALVVVDEAYGEFSDVPS  201 (364)
T ss_pred             --EecCCCccCC--CcCHHHHHHHHhccCCeEEEEcCCCCCCCC-CcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcc
Confidence              1110 00000  026777765543335566666555555665 568888888888886 4899999999988843211


Q ss_pred             cc-cccccCCCcceeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----
Q 013008          298 LW-AHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----  370 (451)
Q Consensus       298 ~~-~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----  370 (451)
                      .. ..+.++-..-+.+|||++| .|+|+||+++++++++.+...  ...++.+.+++.++.++|+.-. .++..+     
T Consensus       202 ~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~-~~~~~~~~~~~  278 (364)
T PRK04781        202 AVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRC--QAPYPVPTPCAALAEQALSAPA-LAVTARRVAEV  278 (364)
T ss_pred             hHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhccc-HHHHHHHHHHH
Confidence            11 1122222233448999999 799999999999999988643  2356778888888887775310 011111     


Q ss_pred             ---------HHhCCCCc-ceecccceeEEEEecCChHHHHHHHHHCCceeeecCC----CCEEEEeCCCCCCHHHHHHHH
Q 013008          371 ---------KLARNPHV-KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----GNVVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       371 ---------~~~~~~~~-~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~iri~~~~~~t~e~i~~~l  436 (451)
                               .++.++.+ ...++.|+++|+.+. +..++.+.|.++||.+.++..    ++++||+..   +.++.++++
T Consensus       279 ~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~-~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~---~~~~~~~l~  354 (364)
T PRK04781        279 RAERERLHAALAQLPGVRRVYPSQGNFLLVRFD-DAEAAFQALLAAGVVVRDQRAAPRLSDALRITLG---TPEQNDRVL  354 (364)
T ss_pred             HHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC-CHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC---CHHHHHHHH
Confidence                     33445433 235567999998885 467888999999999988631    367888644   688899999


Q ss_pred             HHHHHHH
Q 013008          437 EILCKTL  443 (451)
Q Consensus       437 ~~l~~~l  443 (451)
                      ++|++..
T Consensus       355 ~al~~~~  361 (364)
T PRK04781        355 AALQRTQ  361 (364)
T ss_pred             HHHHHHH
Confidence            9888754

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.87  E-value=2.1e-20  Score=187.93  Aligned_cols=319  Identities=15%  Similarity=0.100  Sum_probs=187.6

Q ss_pred             EEEeeccCcccccCCCCC--HHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHhhccC----CCeE--EecCCHHHH
Q 013008           99 EYLDLSSGIAVNALGHGD--ADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSF----ADRV--FFSNTGTEA  167 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~e~v--~~~~sG~eA  167 (451)
                      ..|||..|..+.+-++.+  +.+.+++.+.++...   +....+..+.++.+++++.+..+    .+++  ++|+|+++|
T Consensus        27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a  106 (396)
T PRK09257         27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA  106 (396)
T ss_pred             CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence            468888886533223333  678888877664321   11122223335566666554432    5566  999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CCCeeEeeCCCHHHHHHhcCC--
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVEYGNIEATRKLIQP--  244 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~--  244 (451)
                      +..++++....         +++|.|++.+|+|.++.......+.... .   .+. .++..   --|++++++.+..  
T Consensus       107 l~~~~~~l~~~---------~pGd~Vlv~~P~y~~~~~~~~~~g~~~v-~---v~~~~~~~~---~~d~~~l~~~~~~~~  170 (396)
T PRK09257        107 LRVGADFLKRA---------FPDAKVWVSDPTWPNHRAIFEAAGLEVK-T---YPYYDAATK---GLDFDAMLADLSQAP  170 (396)
T ss_pred             HHHHHHHHHHh---------CCCCeEEECCCCcccHHHHHHHcCCcEE-E---EeccccccC---ccCHHHHHHHHHhCC
Confidence            99998755321         1689999999999988755544332221 1   111 01000   0278999888762  


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc-cc-cccc---ccc-CCCcceeeeccccc
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-GY-LWAH---EHY-GIFPDIMTLAKPLA  318 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~-~~~~---~~~-~~~pdi~t~sK~lg  318 (451)
                      .+..++++...++++| .+++.+.+++|.++|++||+++|+||+|.+|... +. ....   ... ....-+.+|||.++
T Consensus       171 ~~~~~~i~~~p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~  249 (396)
T PRK09257        171 AGDVVLLHGCCHNPTG-ADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG  249 (396)
T ss_pred             CCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc
Confidence            2233333333444445 4679999999999999999999999999988542 11 1111   111 12233458999999


Q ss_pred             C-Ccccccccc---cHH----HHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-C---hHHHHH--------------HH
Q 013008          319 G-GLPIGAALV---TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-N---PAFLAS--------------KL  372 (451)
Q Consensus       319 ~-G~~iG~v~~---~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~---~~~~~~--------------~~  372 (451)
                      . |+|+||+++   +++    ++..+.........+.+++.+.++.+.|+.-. .   ++++++              .+
T Consensus       250 ~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L  329 (396)
T PRK09257        250 LYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEAL  329 (396)
T ss_pred             cccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 999999873   443    33333222222333457777777766664210 0   111111              22


Q ss_pred             hCCC---Cccee-cccceeEEEEecCChHHHHHHH-HHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          373 ARNP---HVKDV-RGLGLIIGIEFDVSATPVVDAC-RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       373 ~~~~---~~~~v-~g~G~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +++.   .+... ...|+++|+.++  . +++..+ .++||.+.|.   +  ||.++ +.++++|++++++|.+++
T Consensus       330 ~~~~~~~~~~~~~p~gg~~~w~~l~--~-~~~~~l~~~~~V~~~p~---~--ri~~~-~~~~~~i~~~~~~i~~~~  396 (396)
T PRK09257        330 KAKGPSRDFDFIARQRGMFSYSGLT--P-EQVDRLREEFGVYAVGS---G--RINVA-GLNESNIDYVAEAIAAVL  396 (396)
T ss_pred             HhcCCCCCcccccccceEEEecCCC--H-HHHHHHHHcCCEEEcCC---C--eEEEe-eCCHHHHHHHHHHHHhhC
Confidence            2221   12222 334777777653  2 344445 5679988874   2  77554 379999999999998753

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.86  E-value=1.9e-19  Score=179.69  Aligned_cols=297  Identities=19%  Similarity=0.182  Sum_probs=193.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcccccCCCC-------CHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHHHHHHHHhhh
Q 013008          112 LGHGDADWIKAVVDQANVLTHVSNMYY-------SIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKFARKFQRH  181 (451)
Q Consensus       112 lG~~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al~~a~~~~~~  181 (451)
                      .|..++.+.+++.+.++.....+..+.       .....++.+.++++++.   +.+++++|+++|+..+++.+..... 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~-   86 (373)
T cd06453           8 TSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANK-   86 (373)
T ss_pred             ccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCC-
Confidence            556788999999988865422111111       12255677888888873   4899999999999999987662100 


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEc
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~e  253 (451)
                             ++++||+.++.|.+.......   ..+            ..+..++.     -|++++++.+.+ ++++|++.
T Consensus        87 -------~g~~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~  146 (373)
T cd06453          87 -------PGDEIVTSVMEHHSNIVPWQQLAERTG------------AKLKVVPVDDDGQLDLEALEKLLTE-RTKLVAVT  146 (373)
T ss_pred             -------CCCEEEECcchhHHHHHHHHHHHhhcC------------cEEEEeecCCCCCcCHHHHHHHhcC-CceEEEEe
Confidence                   478899988887653211111   111            11222222     278999999875 67777777


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK  331 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~  331 (451)
                      .++++.|.+.+    +++|.++|++||++||+|++|+ +|..    ........+|++++|  |.+++ .++|+++++++
T Consensus       147 ~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~  216 (373)
T cd06453         147 HVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHM----PVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEE  216 (373)
T ss_pred             CcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCce----eeeccccCCCEEEeccccccCC-CCcEEEEEchH
Confidence            77677787766    8999999999999999999986 3322    111123457888888  99986 66899999999


Q ss_pred             HHhhccCCCccC------------------CC---CCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCC
Q 013008          332 VASAINYGDHGS------------------TF---AGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPH  377 (451)
Q Consensus       332 i~~~~~~~~~~~------------------t~---~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~  377 (451)
                      +.+.+.+...+.                  .|   +.+..+..+..++++.+.+.++   .++          .+++++.
T Consensus       217 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~  296 (373)
T cd06453         217 LLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPG  296 (373)
T ss_pred             HhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            888776421110                  01   2333444455556665543222   111          2234443


Q ss_pred             ccee---cccceeEEEEec-CChHHHHHHHHHCCceeeecC-----------CCCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          378 VKDV---RGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       378 ~~~v---~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------~~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                      +..+   ...+.++.+.+. .+..++.+.|.++||.+.++.           .++.+|+++...+|++|+|++++.|
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         297 VRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             eEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence            3322   224566777764 456789999999999886532           1367999999999999999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK08637 hypothetical protein; Provisional

Probab=99.86  E-value=5.9e-20  Score=184.19  Aligned_cols=282  Identities=12%  Similarity=0.125  Sum_probs=179.8

Q ss_pred             HHHHHHHHhhccC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008          142 QIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH  215 (451)
Q Consensus       142 ~~~l~~~l~~~~~------~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~  215 (451)
                      +..+++++.+..+      .+++++|+|+++|+..+++++..           ++|.|++.+|+|+.+........+...
T Consensus        50 r~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~-----------~gd~Vlv~~P~y~~~~~~~~~~~g~~v  118 (388)
T PRK08637         50 RDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVD-----------QGDTVLLPDHNWGNYKLTFNTRRGAEI  118 (388)
T ss_pred             HHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcC-----------CCCEEEEcCCCCccHHHHHHHhcCCEE
Confidence            5555555554322      25789999999999999886652           689999999999888654322222221


Q ss_pred             cCCCCcCCC-CCeeEeeCCCHHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH-----hCCEEEEe
Q 013008          216 YRSPFEPVM-PGVNFVEYGNIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-----AGALLVFD  286 (451)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~d~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI~D  286 (451)
                      ..   .+.. .+..    -|++++++.++   +....++++...++++| ..++.+.+++|+++|++     |+++||+|
T Consensus       119 v~---v~~~~~~~~----~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG-~~~s~~~~~~l~~~~~~~~~~~~~~~iI~D  190 (388)
T PRK08637        119 VT---YPIFDEDGG----FDTDALKEALQAAYNKGKVIVILNFPNNPTG-YTPTEKEATAIVEAIKELADAGTKVVAVVD  190 (388)
T ss_pred             EE---ecccCCCCc----CCHHHHHHHHHhhccCCCEEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence            11   1110 1111    17899988875   22333343332344444 57899999999999886     99999999


Q ss_pred             ccccCCCcccccc-c-ccc-cCCCcce--e---eeccccc-CCccccccccc------HHHHhhccCC----CccCCCCC
Q 013008          287 EVQCGLGRTGYLW-A-HEH-YGIFPDI--M---TLAKPLA-GGLPIGAALVT------EKVASAINYG----DHGSTFAG  347 (451)
Q Consensus       287 Ev~tg~gr~G~~~-~-~~~-~~~~pdi--~---t~sK~lg-~G~~iG~v~~~------~~i~~~~~~~----~~~~t~~~  347 (451)
                      |+|.+|-+.+... . +.. .+....+  +   ++||.++ .|+|+||++.+      +++++.+...    .....++.
T Consensus       191 e~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  270 (388)
T PRK08637        191 DAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNG  270 (388)
T ss_pred             ccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCC
Confidence            9998875544321 1 111 1222232  2   6899876 69999999843      6777766421    11223467


Q ss_pred             cHHHHHHHHHHHHHhcChHHHHH-----------------HHhCCC---Ccceec-ccceeEEEEec-CChHHHHHHHH-
Q 013008          348 SPLVCNAAIAVLDKISNPAFLAS-----------------KLARNP---HVKDVR-GLGLIIGIEFD-VSATPVVDACR-  404 (451)
Q Consensus       348 ~~~~~aaa~aal~~~~~~~~~~~-----------------~~~~~~---~~~~v~-g~G~~~~~~~~-~~~~~~~~~l~-  404 (451)
                      |.++++++.++|+   +..+.++                 .++.++   .+...+ ..|+++|+.++ .+..++++.|+ 
T Consensus       271 s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l~~  347 (388)
T PRK08637        271 PHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHLLE  347 (388)
T ss_pred             CcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCChHHHHHHHHHHhh
Confidence            8889999888874   2222111                 122221   222233 34778888874 24567888887 


Q ss_pred             HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          405 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       405 ~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++||.+.+.+. +.+|++.+. .+++++++++++|.++++.++
T Consensus       348 ~~gv~~~~~~~-~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~~  388 (388)
T PRK08637        348 KYGIGTIALNE-TDLRIAFSC-VEEEDIPELFDSIYKAIKDLR  388 (388)
T ss_pred             hcceEEEeccC-CceEEEeec-CCHHHHHHHHHHHHHHHHhcC
Confidence            56998876544 679997665 689999999999999997653

>PRK07908 hypothetical protein; Provisional

Probab=99.86  E-value=1.9e-19  Score=178.02  Aligned_cols=300  Identities=17%  Similarity=0.131  Sum_probs=185.7

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~  174 (451)
                      +..++||..|..  .++ .++.+++++.+.+.....   +.......+|.+.++++++  .++|++|+|+++|+..+++ 
T Consensus        21 ~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~---Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-   93 (349)
T PRK07908         21 GPGLLDFAVNVR--HDT-PPEWLRERLAARLGDLAA---YPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-   93 (349)
T ss_pred             CCCeEEecCCCC--CCC-CCHHHHHHHHHHhhHhhc---CCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-
Confidence            578999988764  343 678899999988765321   1112235567777777775  7899999999999998877 


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP  254 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep  254 (451)
                      +.            + +++++..|+|.+....... .|.....   .+...+..    -|++++    .+ +++++++..
T Consensus        94 l~------------~-~~viv~~P~y~~~~~~~~~-~G~~i~~---v~~~~~~~----~d~~~l----~~-~~~~i~l~n  147 (349)
T PRK07908         94 LR------------P-RRAAVVHPSFTEPEAALRA-AGIPVHR---VVLDPPFR----LDPAAV----PD-DADLVVIGN  147 (349)
T ss_pred             cC------------C-CeEEEeCCCChHHHHHHHH-cCCEEEe---eccCcccC----cChhHh----cc-CCCEEEEcC
Confidence            22            3 5678889999776543322 2222111   11111110    144443    22 344555533


Q ss_pred             ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc---eeeeccccc-CCcccccccccH
Q 013008          255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD---IMTLAKPLA-GGLPIGAALVTE  330 (451)
Q Consensus       255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd---i~t~sK~lg-~G~~iG~v~~~~  330 (451)
                      .++++|.+. +.   ++|.++|+ +++++|+||+|..| ..+........+. ++   +.+|||.++ .|+|+||+++++
T Consensus       148 p~NPTG~~~-~~---~~l~~l~~-~~~~iIvDe~y~~~-~~~~~~~l~~~~~-~~~i~i~S~SK~~~l~GlRiG~~~~~~  220 (349)
T PRK07908        148 PTNPTSVLH-PA---EQLLALRR-PGRILVVDEAFADA-VPGEPESLAGDDL-PGVLVLRSLTKTWSLAGLRVGYALGAP  220 (349)
T ss_pred             CCCCCCCCc-CH---HHHHHHHh-cCCEEEEECcchhh-ccCCccccccccC-CCEEEEeecccccCCccceeeeeecCH
Confidence            345556544 44   46677776 47888899999876 2333211111111 23   237899998 799999999999


Q ss_pred             HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceec-ccceeEEEEecCC
Q 013008          331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVR-GLGLIIGIEFDVS  395 (451)
Q Consensus       331 ~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~-g~G~~~~~~~~~~  395 (451)
                      ++++.+.....  .+..+++.++++.+.++. ....++++              .++++ .+.... ..|.++|+.++. 
T Consensus       221 ~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~~-  295 (349)
T PRK07908        221 DVLARLTRGRA--HWPVGTLQLEAIAACCAP-RAVAEAAADAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVPD-  295 (349)
T ss_pred             HHHHHHHhcCC--CCCccHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECCc-
Confidence            99988764322  245566666665554431 01111111              22223 233233 568888888753 


Q ss_pred             hHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ...+.+.|.++||.+.++..     .+++|+++   .+++++++++++|++++.
T Consensus       296 ~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        296 AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence            56788888899999988631     36899976   378899999999988764

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=4.5e-20  Score=182.80  Aligned_cols=267  Identities=17%  Similarity=0.205  Sum_probs=174.2

Q ss_pred             HHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCccCChhhhhhccCCCCcCC
Q 013008          142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRS  218 (451)
Q Consensus       142 ~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~  218 (451)
                      ..+|.+.++++++  .++|++++|+++++..++++...           ++ +.|++.+|+|..+...+...+. .... 
T Consensus        62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~-----------~g~d~vlv~~P~y~~y~~~~~~~g~-~v~~-  128 (354)
T PRK04635         62 PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCE-----------PGQDSIACFGPTYGMYAISAETFNV-GVKA-  128 (354)
T ss_pred             HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcC-----------CCCCeEEEcCCChHHHHHHHHHcCC-EEEE-
Confidence            5778888888876  77999999999999999986541           45 8899999999876543322221 1100 


Q ss_pred             CCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc
Q 013008          219 PFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL  298 (451)
Q Consensus       219 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~  298 (451)
                        .|...+..    -|++.++. + + ++++|++...++++|. ..+.+.+++|.+.|+  +++||+||+|..|......
T Consensus       129 --v~~~~~~~----~~~~~l~~-~-~-~~~li~i~nP~NPTG~-~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~s~  196 (354)
T PRK04635        129 --LPLTADYQ----LPLDYIEQ-L-D-GAKLVFICNPNNPTGT-VIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEYSV  196 (354)
T ss_pred             --EecCCCCC----CCHHHHHh-c-c-CCCEEEEeCCCCCCCc-cCCHHHHHHHHHhCC--CcEEEEeCchHhhccCcch
Confidence              11111111    16777763 3 3 4555555554555565 457777888887776  4999999999877421111


Q ss_pred             ccccccCCCcc---eeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHH---H-
Q 013008          299 WAHEHYGIFPD---IMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA---S-  370 (451)
Q Consensus       299 ~~~~~~~~~pd---i~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~---~-  370 (451)
                        .......+.   +.+|||.++ +|+|+||+++++++++.+...  ...++.+.+.+.++.++|+....+.+.+   . 
T Consensus       197 --~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~  272 (354)
T PRK04635        197 --ADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRV--IAPYPVPLPVSEIATQALSEAGLARMKFQVLDL  272 (354)
T ss_pred             --HHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence              111111233   348999998 799999999999999887532  2345667777777777775210011111   1 


Q ss_pred             ---------HHhCCCCcceecccceeEEEEecCChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHH
Q 013008          371 ---------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEI  438 (451)
Q Consensus       371 ---------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~  438 (451)
                               .+++++.+...++.|.++++.+. +..++.+.|.++||.+...+.   ++.+|+++.   ++|++++++++
T Consensus       273 ~~~r~~l~~~L~~~~~~~~~~~~g~f~~~~~~-~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~---~~e~~~~l~~a  348 (354)
T PRK04635        273 NAQGARLQAALSMYGGAKVLEGNGNYVLAKFD-DVDAVFKALWDAGIVARAYKDPRLANCIRFSFS---NRAETDKLIGL  348 (354)
T ss_pred             HHHHHHHHHHHHhCCCceECCCCCcEEEEECC-CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHH
Confidence                     23344434445567888888774 467788889999999976532   367899743   78999999998


Q ss_pred             HHH
Q 013008          439 LCK  441 (451)
Q Consensus       439 l~~  441 (451)
                      |++
T Consensus       349 l~~  351 (354)
T PRK04635        349 IRN  351 (354)
T ss_pred             HHH
Confidence            875

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.85  E-value=5.6e-19  Score=176.93  Aligned_cols=307  Identities=12%  Similarity=0.051  Sum_probs=196.4

Q ss_pred             cccCCCCCHHHHHHHHHHHhhcccccC------CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhc
Q 013008          109 VNALGHGDADWIKAVVDQANVLTHVSN------MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS  182 (451)
Q Consensus       109 ~~~lG~~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~  182 (451)
                      -.-+|..++.+.+|+.+........+.      ....+...++++.++++++.+.+++++|+++|+..+++.+.      
T Consensus        26 ~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~------   99 (387)
T PRK09331         26 IQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLC------   99 (387)
T ss_pred             hhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc------
Confidence            345788899999999988754322111      11234578999999999998899999999999999998764      


Q ss_pred             CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-------CCHHHHHHhcCC------CCeEE
Q 013008          183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------GNIEATRKLIQP------GKTAA  249 (451)
Q Consensus       183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~------~~~aa  249 (451)
                           .++++|++.++++.+.. .++...+..            +..++.       .|++++++.++.      .++++
T Consensus       100 -----~~gd~Vlv~~~~h~s~~-~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~l  161 (387)
T PRK09331        100 -----KKGDYVVLDGLAHYTSY-VAAERAGLN------------VREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPAL  161 (387)
T ss_pred             -----CCCCEEEECCCchHHHH-HHHHHcCCE------------EEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEE
Confidence                 15788888776654433 222322221            112221       378999998863      26788


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCccccccccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT  329 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~  329 (451)
                      |+++.++++.|.+.+    +++|.++|++||+++|+|++|+ +|..+  +....+++...+.+++|+++++.++|+++++
T Consensus       162 V~l~~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~--~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~  234 (387)
T PRK09331        162 ALLTHVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP--VDGKKLGADFIVGSGHKSMAASAPSGVLATT  234 (387)
T ss_pred             EEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC--CCHHHcCCCEEEeeCcccccCCCCEEEEEEC
Confidence            888888888888777    9999999999999999999995 43222  1222345444455778999877789999999


Q ss_pred             HHHHhhccCCCccC------CCC--CcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCCCccee---ccccee
Q 013008          330 EKVASAINYGDHGS------TFA--GSPLVCNAAIAVLDKISN-PAFLAS----------KLARNPHVKDV---RGLGLI  387 (451)
Q Consensus       330 ~~i~~~~~~~~~~~------t~~--~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~~~~~v---~g~G~~  387 (451)
                      +++++.+.......      .++  .++...++++++++.+.+ .+.+++          .+++++.+..+   .....+
T Consensus       235 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i  314 (387)
T PRK09331        235 EEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDL  314 (387)
T ss_pred             HHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCe
Confidence            99888764321100      011  122233444455543321 111111          23344333222   122333


Q ss_pred             EEEEec----------CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          388 IGIEFD----------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       388 ~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ..++..          ..+..+.+.|.++||...+.+.+..+|+. +..++++++++++++|+++++++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~-~~g~t~~di~~l~~aL~~i~~~~~  383 (387)
T PRK09331        315 MKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLS-TYGLTWEQVEYVADAFKEIAEKYG  383 (387)
T ss_pred             EEEeCCchhHHhhhccccchhHHHHHHHcCceEEccCCceEEEEE-eccCCHHHHHHHHHHHHHHHHhcC
Confidence            334321          12356889999999985544443455665 456899999999999999887653

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.85  E-value=5.7e-19  Score=176.63  Aligned_cols=315  Identities=17%  Similarity=0.146  Sum_probs=192.3

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC------CHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY------SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA  171 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~a  171 (451)
                      |+|..+      .+..++.|.+++.+.+..........+      .....++.+++++.++  .++|+|++||++|+..+
T Consensus         2 yld~aa------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~a   75 (379)
T TIGR03402         2 YLDNNA------TTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTA   75 (379)
T ss_pred             cCCCcC------CCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHH
Confidence            566554      334778999999988765311111111      1225577788888887  56899999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc--cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      ++.+.....        +++.||+....|+........+  .+....   ..+...+.    .-|++++++.+++ ++++
T Consensus        76 l~~~~~~~~--------~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~---~v~~~~~g----~~~~~~l~~~i~~-~~~l  139 (379)
T TIGR03402        76 IKSALAAQP--------EKRHIITTAVEHPAVLSLCQHLEKQGYKVT---YLPVDEEG----RLDLEELRAAITD-DTAL  139 (379)
T ss_pred             HHHHHHhcC--------CCCeEEEcccccHHHHHHHHHHHHcCCEEE---EEccCCCC----cCCHHHHHHhcCC-CcEE
Confidence            987653211        3556666665554432211111  111100   01111111    0278999999965 5677


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCccccccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAAL  327 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~  327 (451)
                      |++..+++++|.+.+    +++|.++|++||+++|+|++|+ +|..    ..+.....+|++++|  | +.|...+|++.
T Consensus       140 v~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~----~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~  209 (379)
T TIGR03402       140 VSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI----PIDLKEMNIDMLSLSGHK-LHGPKGVGALY  209 (379)
T ss_pred             EEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc----ccCcccCCCCEEEEcHHH-cCCCCceEEEE
Confidence            877777778888777    8899999999999999999996 4321    122234568999988  9 54434577777


Q ss_pred             ccHHHHhhccCCCc-------cCCCCCcHHHHHHHHHHHHHhcCh--HHHHH-----------HHhCCCCcceecc---c
Q 013008          328 VTEKVASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISNP--AFLAS-----------KLARNPHVKDVRG---L  384 (451)
Q Consensus       328 ~~~~i~~~~~~~~~-------~~t~~~~~~~~aaa~aal~~~~~~--~~~~~-----------~~~~~~~~~~v~g---~  384 (451)
                      .+++..  +.+...       ....+.|..+..+..++++.+.+.  ...++           +.+.++.+.....   .
T Consensus       210 v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~  287 (379)
T TIGR03402       210 IRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKR  287 (379)
T ss_pred             ECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccC
Confidence            776531  222111       011223555566666667654321  11111           1222443321111   1


Q ss_pred             -ceeEEEEe-cCChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          385 -GLIIGIEF-DVSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       385 -G~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                       ...+.+.+ .....++...|.++||.+.++..                      .+.+|++++...|+||||++++.|+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~  367 (379)
T TIGR03402       288 LPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLP  367 (379)
T ss_pred             CCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHH
Confidence             11233333 24567888888889999875420                      2579999999999999999999999


Q ss_pred             HHHHHHhh
Q 013008          441 KTLPVLDS  448 (451)
Q Consensus       441 ~~l~~~~~  448 (451)
                      +++++++.
T Consensus       368 ~~~~~~~~  375 (379)
T TIGR03402       368 PIIARLRA  375 (379)
T ss_pred             HHHHHHHh
Confidence            99887653

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.84  E-value=2.1e-18  Score=174.02  Aligned_cols=314  Identities=15%  Similarity=0.070  Sum_probs=201.3

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC------CHHHHHHHHHHhhccC---CCeEEecCCHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY------SIPQIELAKRLVACSF---ADRVFFSNTGTE  166 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~------~~~~~~l~~~l~~~~~---~e~v~~~~sG~e  166 (451)
                      +.-|+|..+.      |..++.+.+++.+.+....... ...+      .....++.+.++++++   .++|+|++|+++
T Consensus        23 ~~iYld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~   96 (406)
T PRK09295         23 PLAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE   96 (406)
T ss_pred             ceEEEeCccc------ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence            4578987663      3477889999988886532111 1111      1225577788888886   468999999999


Q ss_pred             HHHHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHH
Q 013008          167 ANEAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRK  240 (451)
Q Consensus       167 A~~~al~~a~~-~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~  240 (451)
                      ++..+++.... ..        .++++||+.++.||............         ....+..++.     .|+++|++
T Consensus        97 ~l~~~~~~~~~~~~--------~~gd~vl~~~~~~~s~~~~~~~~~~~---------~g~~v~~v~~~~~~~~d~~~l~~  159 (406)
T PRK09295         97 GINLVANSWGNSNV--------RAGDNIIISEMEHHANIVPWQMLCAR---------VGAELRVIPLNPDGTLQLETLPA  159 (406)
T ss_pred             HHHHHHHHhhhhcC--------CCcCEEEECcchhhHHHHHHHHHHHH---------cCcEEEEEecCCCCCCCHHHHHH
Confidence            99998875421 11        15789999998887643221111000         0011122221     27899999


Q ss_pred             hcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--cccc
Q 013008          241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLA  318 (451)
Q Consensus       241 ~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg  318 (451)
                      ++.+ ++++|++..+++++|.+.+    +++|.++|+++|+++|+|++|+ +|...  ....  ...+|++++|  |.+|
T Consensus       160 ~i~~-~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~g  229 (406)
T PRK09295        160 LFDE-RTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP--VDVQ--ALDCDFYVFSGHKLYG  229 (406)
T ss_pred             hcCC-CcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc--cCch--hcCCCEEEeehhhccC
Confidence            9865 5677777777777888877    8999999999999999999995 43321  1222  2346777665  9665


Q ss_pred             CCcccccccccHHHHhhccCCCcc----------------------CCCCCcHHHHHHHHHHHHHhcChH---HHHH---
Q 013008          319 GGLPIGAALVTEKVASAINYGDHG----------------------STFAGSPLVCNAAIAVLDKISNPA---FLAS---  370 (451)
Q Consensus       319 ~G~~iG~v~~~~~i~~~~~~~~~~----------------------~t~~~~~~~~aaa~aal~~~~~~~---~~~~---  370 (451)
                      . ..+|++++++++++.+.+...+                      .+-+.|..+..+..++++.+.+.+   ..++   
T Consensus       230 p-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~  308 (406)
T PRK09295        230 P-TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQN  308 (406)
T ss_pred             C-CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            3 2478999999887765431100                      001345667778888888764422   2122   


Q ss_pred             ----H---HhCCCCcceec--ccceeEEEEec-CChHHHHHHHHHCCceeeecC-----------CCCEEEEeCCCCCCH
Q 013008          371 ----K---LARNPHVKDVR--GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISE  429 (451)
Q Consensus       371 ----~---~~~~~~~~~v~--g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------~~~~iri~~~~~~t~  429 (451)
                          +   ++.++.+..+.  ..+.++.+.++ ....++.+.|.++||.+..+.           .++.+|+++..-.|+
T Consensus       309 l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~  388 (406)
T PRK09295        309 LMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTH  388 (406)
T ss_pred             HHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCH
Confidence                2   22344332221  12345566553 356778888888999887542           125799999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013008          430 QELDQAVEILCKTLP  444 (451)
Q Consensus       430 e~i~~~l~~l~~~l~  444 (451)
                      ||||++++.|+++..
T Consensus       389 ~did~l~~~l~~i~~  403 (406)
T PRK09295        389 EEVDRLVAGLQRIHR  403 (406)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988653

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.84  E-value=1.3e-18  Score=175.10  Aligned_cols=310  Identities=16%  Similarity=0.103  Sum_probs=193.8

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC-----CHHHHHHHHHHhhccC--CCeEEecCCHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY-----SIPQIELAKRLVACSF--ADRVFFSNTGTEANE  169 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~-----~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~  169 (451)
                      ..|+|..+      .|..++.+.+++.+.+......+ ..+.     .....++.+.++++++  .+.+++++|+++++.
T Consensus        18 ~~yl~~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~   91 (397)
T TIGR01976        18 RVFFDNPA------GTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF   91 (397)
T ss_pred             eEEecCCc------cCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence            47888654      34578899999999886542211 1111     1225788899999887  447999999999988


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhh---hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA---LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK  246 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  246 (451)
                      .++++.....+        ++++||+.++.|++.....   ....|.....   .+..++..   ..|++++++.+.+ +
T Consensus        92 ~~~~~~~~~~~--------~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~---~~~~~~~~---~~~~~~l~~~i~~-~  156 (397)
T TIGR01976        92 LLSRAISRRWG--------PGDEVIVTRLDHEANISPWLQAAERAGAKVKW---ARVDEATG---ELHPDDLASLLSP-R  156 (397)
T ss_pred             HHHHHHHhcCC--------CCCEEEEcCCchHhHHHHHHHHHHhcCCEEEE---EeccccCC---CcCHHHHHHhcCC-C
Confidence            87775532221        5789999988776543221   1112211110   11111000   1278999999965 5


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccc
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIG  324 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG  324 (451)
                      +++|+++.+++++|.+.+    +++|.++|++||+++|+||+|. .|. . .....  ...+|++  +++|.+  |.++|
T Consensus       157 ~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~-~~~~~--~~~~d~~~~s~~K~~--g~~~G  225 (397)
T TIGR01976       157 TRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APH-G-LIDVQ--ATGADFLTCSAYKFF--GPHMG  225 (397)
T ss_pred             ceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c-CCCHH--HcCCCEEEEechhhc--CCceE
Confidence            677777777777887776    9999999999999999999985 321 1 11122  2346765  567887  45789


Q ss_pred             cccccHHHHhhccCCCccCCC----------CCcHHHHHHHHHHHHHhcChH-----------------HHHH-------
Q 013008          325 AALVTEKVASAINYGDHGSTF----------AGSPLVCNAAIAVLDKISNPA-----------------FLAS-------  370 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~----------~~~~~~~aaa~aal~~~~~~~-----------------~~~~-------  370 (451)
                      ++++++++++.+.+......+          +.+....++..++++.+.+.+                 ..++       
T Consensus       226 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  305 (397)
T TIGR01976       226 ILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEY  305 (397)
T ss_pred             EEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHH
Confidence            999999988877543211111          123344555556666543211                 0111       


Q ss_pred             HH---hCCCCcceecc-----cceeEEEEec-CChHHHHHHHHHCCceeeecC--------------CCCEEEEeCCCCC
Q 013008          371 KL---ARNPHVKDVRG-----LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG--------------KGNVVRLVPPLII  427 (451)
Q Consensus       371 ~~---~~~~~~~~v~g-----~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~--------------~~~~iri~~~~~~  427 (451)
                      +.   +.++.+..+.+     .+.++.+.+. ....++.++|.++||.+..+.              .+..+|+++...+
T Consensus       306 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~  385 (397)
T TIGR01976       306 LLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYN  385 (397)
T ss_pred             HHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccC
Confidence            22   23332322211     3445555553 456789999999999998651              1357999999999


Q ss_pred             CHHHHHHHHHHH
Q 013008          428 SEQELDQAVEIL  439 (451)
Q Consensus       428 t~e~i~~~l~~l  439 (451)
                      |++|++++++.|
T Consensus       386 t~~di~~l~~~l  397 (397)
T TIGR01976       386 TAEEVDRLLEAL  397 (397)
T ss_pred             CHHHHHHHHHhC
Confidence            999999998864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.84  E-value=4.3e-19  Score=175.96  Aligned_cols=300  Identities=17%  Similarity=0.102  Sum_probs=188.2

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      .++.+.+|+.+.+..  +.+ ........++++.+++.++.   +.+++++||++|+..+++...           .+++
T Consensus        10 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~-----------~~g~   75 (356)
T cd06451          10 VPPRVLKAMNRPMLG--HRS-PEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL-----------EPGD   75 (356)
T ss_pred             CCHHHHHHhCCCccC--CCC-HHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC-----------CCCC
Confidence            567787777543321  110 01122366888889998873   347899999999999998654           1578


Q ss_pred             eEEEEcCCccCCh-hhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008          192 EFVSFTNSFHGRT-MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       192 ~ii~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      .||+.+++|++.. .......+.....   .+..++    ...|++++++.++++++++|++..++++.|.+.+    ++
T Consensus        76 ~vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~----~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~----~~  144 (356)
T cd06451          76 KVLVGVNGVFGDRWADMAERYGADVDV---VEKPWG----EAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP----LE  144 (356)
T ss_pred             EEEEecCCchhHHHHHHHHHhCCCeEE---eecCCC----CCCCHHHHHHHHhccCCCEEEEeccCCCcccccC----HH
Confidence            8999988776532 1222222211111   111111    0237899999997546677776666666787766    89


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhccC--CCc-----
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY--GDH-----  341 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~--~~~-----  341 (451)
                      +|.++|++||+++|+|++|. +|..  ......+  .+|+++  .+|.++++.++|+++.++++++.+..  ...     
T Consensus       145 ~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~~--~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~  219 (356)
T cd06451         145 GIGALAKKHDALLIVDAVSS-LGGE--PFRMDEW--GVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFD  219 (356)
T ss_pred             HHHHHHHhcCCEEEEeeehh-ccCc--ccccccc--CccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeec
Confidence            99999999999999999985 5422  1222222  356554  46999876678999999988877642  110     


Q ss_pred             ------------cCCCCCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCC--Ccceecc-cceeEEEEec
Q 013008          342 ------------GSTFAGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNP--HVKDVRG-LGLIIGIEFD  393 (451)
Q Consensus       342 ------------~~t~~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~--~~~~v~g-~G~~~~~~~~  393 (451)
                                  ..+.+.++..++++.++++.+....+   .++          .++...  ......+ .+.+.++.++
T Consensus       220 ~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  299 (356)
T cd06451         220 LLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVP  299 (356)
T ss_pred             HHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECC
Confidence                        11122345556677777776543321   111          112221  1111111 2333344443


Q ss_pred             --CChHHHHHHHHHC-CceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          394 --VSATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       394 --~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                        ....++++.|.++ ||.+.++.   .++.+|++++..+|+||+++++++|+++++
T Consensus       300 ~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         300 EGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             CCCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence              3467899999998 99998753   236899999999999999999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.84  E-value=7.7e-19  Score=173.91  Aligned_cols=299  Identities=14%  Similarity=0.142  Sum_probs=188.7

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      .+|.+.+++....   .+....+ .+...++.+.+++.++.    ..+++++||++++..+++.+..           ++
T Consensus        10 ~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~-----------~~   74 (355)
T TIGR03301        10 TSATVRDAMLVDW---CHWDSEF-NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP-----------RD   74 (355)
T ss_pred             CCHHHHHHhhhhc---cCCCHHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC-----------CC
Confidence            4577777776622   2211111 24577888999998873    2678899999999999987651           46


Q ss_pred             ceEEEEcCCccCChhhh-hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-CCeEEEEEccccCCCCccccCHHH
Q 013008          191 TEFVSFTNSFHGRTMGA-LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-GKTAAVFVEPIQGEGGIYSATKEF  268 (451)
Q Consensus       191 ~~ii~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~aavi~ep~~~~~G~~~~~~~~  268 (451)
                      +++|+.++++++..... ....+.....   .+...+.    ..|++++++.+.. .++..|++..+++.+|...+    
T Consensus        75 ~~vi~~~~~~~~~~~~~~a~~~g~~~~~---i~~~~~~----~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~----  143 (355)
T TIGR03301        75 GKLLVLINGAYGERLAKICEYLGIPHTD---LNFSEYE----PPDLNRIEEALAADPDITHVATVHHETTTGILNP----  143 (355)
T ss_pred             CeEEEECCCchhhHHHHHHHHcCCceEE---EecCCCC----CCCHHHHHHHHHhCCCceEEEEEecCCcccchhH----
Confidence            78888888877753221 1111211110   0111110    1278999999863 24445544434455676665    


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCC--------
Q 013008          269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD--------  340 (451)
Q Consensus       269 l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--------  340 (451)
                      +++|.++|++||+++|+|++++ +|..  .+....+++..-+.+++|+++++..+|++++++++++.+....        
T Consensus       144 ~~~i~~l~~~~~~~livD~~~s-~g~~--~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~  220 (355)
T TIGR03301       144 LEAIAKVARSHGAVLIVDAMSS-FGAI--PIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLY  220 (355)
T ss_pred             HHHHHHHHHHcCCEEEEEeccc-cCCc--ccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHH
Confidence            8999999999999999999885 5422  2233334433334578899876555799999999888765210        


Q ss_pred             ---------ccCCCCCcHHHHHHHHHHHHHhcChH-H---HHH----------HHhCCCCccee----cccceeEEEEec
Q 013008          341 ---------HGSTFAGSPLVCNAAIAVLDKISNPA-F---LAS----------KLARNPHVKDV----RGLGLIIGIEFD  393 (451)
Q Consensus       341 ---------~~~t~~~~~~~~aaa~aal~~~~~~~-~---~~~----------~~~~~~~~~~v----~g~G~~~~~~~~  393 (451)
                               ....++.+++.+.++.++++.+.+++ +   .++          .+++++ +..+    ...+.++++.+.
T Consensus       221 ~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g-~~~~~~~~~~~~~~~~~~~~  299 (355)
T TIGR03301       221 DQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALG-FQPLLPERWQSPIIVSFLYP  299 (355)
T ss_pred             HHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcC-CeeecCCCCCCCcEEEEECC
Confidence                     01234567777777778887664332 1   111          222332 1111    123455666653


Q ss_pred             ----CChHHHHHHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          394 ----VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       394 ----~~~~~~~~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                          ....++.+.|.++||.+.+++.  .+.+||++...+++++++++++.|++++
T Consensus       300 ~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       300 DDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             CCCcchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence                2346899999999999988742  2679999877889999999999998753

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.83  E-value=4.4e-18  Score=171.62  Aligned_cols=316  Identities=16%  Similarity=0.114  Sum_probs=199.3

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CC------CHHHHHHHHHHhhccC---CCeEEecCCHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YY------SIPQIELAKRLVACSF---ADRVFFSNTGTEAN  168 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~------~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~  168 (451)
                      -|+|..+      .|..++.+.+++.+.++........ .+      .....++.+.++++++   .+.+++++|+++++
T Consensus        20 ~yld~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l   93 (403)
T TIGR01979        20 VYLDSAA------TSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESI   93 (403)
T ss_pred             EEEeCcc------ccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHH
Confidence            6888554      4557788999998877653211111 11      1125577788888887   35899999999999


Q ss_pred             HHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC
Q 013008          169 EAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP  244 (451)
Q Consensus       169 ~~al~~a~~-~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~  244 (451)
                      ..+++.+.. ..        .+++.||+.++.|+........   ..+....   ..+...+..    -|++++++.+.+
T Consensus        94 ~~~~~~~~~~~~--------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~---~v~~~~~~~----~~~~~l~~~i~~  158 (403)
T TIGR01979        94 NLVAYSWGDSNL--------KAGDEIVISEMEHHANIVPWQLLAERTGATLK---FIPLDDDGT----LDLDDLEKLLTE  158 (403)
T ss_pred             HHHHHHhhhhcC--------CCCCEEEECcchhhHHHHHHHHHHHhcCcEEE---EEecCCCCC----CCHHHHHHHhcc
Confidence            988876531 11        1578899988887654322111   1111100   011111100    278999999864


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcc
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLP  322 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~  322 (451)
                       ++++|++..+++.+|.+.+    +++|.++|++||+++|+|++|. +|..  .....  ...+|++  +++|.+|. ..
T Consensus       159 -~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K~~gp-~G  227 (403)
T TIGR01979       159 -KTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQ--ALDCDFYVFSGHKMYGP-TG  227 (403)
T ss_pred             -CCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCcc--ccCCCEEEEecccccCC-CC
Confidence             5777777777777888777    9999999999999999999995 3321  11122  2346766  45697753 34


Q ss_pred             cccccccHHHHhhccCCCccC-----------C-------C---CCcHHHHHHHHHHHHHhcCh---HHHHH--------
Q 013008          323 IGAALVTEKVASAINYGDHGS-----------T-------F---AGSPLVCNAAIAVLDKISNP---AFLAS--------  370 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~-----------t-------~---~~~~~~~aaa~aal~~~~~~---~~~~~--------  370 (451)
                      +|++++++++++.+.+...++           .       |   +.+...++++.++++.+.+.   .+.++        
T Consensus       228 ~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l  307 (403)
T TIGR01979       228 IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYA  307 (403)
T ss_pred             ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            788888988877664321100           0       1   23455566666777765432   22222        


Q ss_pred             --HHhCCCCcceecc-----cceeEEEEec-CChHHHHHHHHHCCceeeecC-----------CCCEEEEeCCCCCCHHH
Q 013008          371 --KLARNPHVKDVRG-----LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQE  431 (451)
Q Consensus       371 --~~~~~~~~~~v~g-----~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------~~~~iri~~~~~~t~e~  431 (451)
                        .++.++.+..+.+     .+.++.+.+. ....++.+.|.++||.+.++.           .++.+|++++...|++|
T Consensus       308 ~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~d  387 (403)
T TIGR01979       308 LERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEED  387 (403)
T ss_pred             HHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHH
Confidence              2233443332222     2556667663 346778888889999887532           13579999998899999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013008          432 LDQAVEILCKTLPVL  446 (451)
Q Consensus       432 i~~~l~~l~~~l~~~  446 (451)
                      ++++++.|+++++.+
T Consensus       388 i~~l~~~l~~~~~~~  402 (403)
T TIGR01979       388 IDALVEALKKVRKFF  402 (403)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887754

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.83  E-value=1.7e-18  Score=171.94  Aligned_cols=306  Identities=13%  Similarity=0.093  Sum_probs=186.5

Q ss_pred             CCCCHHHHHHHHHHHhhcccccC-C-----CCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 013008          113 GHGDADWIKAVVDQANVLTHVSN-M-----YYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDS  186 (451)
Q Consensus       113 G~~~p~v~~a~~~~~~~~~~~~~-~-----~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~  186 (451)
                      |+..|++.+++.+.-......+. .     ...+...++.+++++.++.+.+++++|+++|+..+++...          
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~----------   80 (361)
T cd06452          11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLC----------   80 (361)
T ss_pred             CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhc----------
Confidence            56778888888876643222111 0     1224478999999999999999999999999999998654          


Q ss_pred             CCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC------CCeEEEEEccccCCCC
Q 013008          187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP------GKTAAVFVEPIQGEGG  260 (451)
Q Consensus       187 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~------~~~aavi~ep~~~~~G  260 (451)
                       .++++|++.+++|.+... .....+.....   .+...+-.+  .-|++++++++++      .++++|++...+++.|
T Consensus        81 -~~gd~Vl~~~~~~~~~~~-~~~~~g~~~~~---v~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG  153 (361)
T cd06452          81 -EKGDWVVVDGLAHYTSYV-AAERAGLNVRE---VPNTGHPEY--HITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYG  153 (361)
T ss_pred             -CCCCEEEEcCCcchHHHH-HHHhcCCEEEE---EecCCCCCc--ccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCe
Confidence             158889998877655432 22222211111   111111000  1278999888852      2567777776666677


Q ss_pred             ccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCC
Q 013008          261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD  340 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~  340 (451)
                      ...+    +++|.++|++||+++|+||+|. +|..  .+....++....+.+++|+++++.++|++++++++++.+....
T Consensus       154 ~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~  226 (361)
T cd06452         154 NLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTS  226 (361)
T ss_pred             eecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccc
Confidence            6655    8999999999999999999996 4322  1222334443444578899987679999999999888875422


Q ss_pred             cc------CCCCC--cHHHHHHHHHHHHHhcC--hH---------HHHHHHhCCCCccee---cccceeEEEEec-----
Q 013008          341 HG------STFAG--SPLVCNAAIAVLDKISN--PA---------FLASKLARNPHVKDV---RGLGLIIGIEFD-----  393 (451)
Q Consensus       341 ~~------~t~~~--~~~~~aaa~aal~~~~~--~~---------~~~~~~~~~~~~~~v---~g~G~~~~~~~~-----  393 (451)
                      ..      ..+++  ++..++++.++++.+.+  +.         .+.+.+++++.+..+   .+...++.++..     
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~  306 (361)
T cd06452         227 QMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEI  306 (361)
T ss_pred             cccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchh
Confidence            11      10111  11223334444433211  01         111123444433222   123334444432     


Q ss_pred             -----CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          394 -----VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       394 -----~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                           ....++.+.|+++||.....+.+..+|+.. ..+++|+++.++++|+++.
T Consensus       307 ~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~-~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         307 AKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLST-YGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             hhhccccchhHHHHHHHcCceEEcCCCceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence                 112368899999999965444446788875 4479999999999998654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.83  E-value=9.4e-18  Score=170.40  Aligned_cols=308  Identities=13%  Similarity=0.050  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 013008          118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT  197 (451)
Q Consensus       118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~  197 (451)
                      .+.+++.+++......  +.......+|.+.++++++.+.+++|+||++|+..+++++.           +++| ||+.+
T Consensus        58 a~~~a~~~a~~~g~~~--Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all-----------~pGD-Vii~~  123 (460)
T PRK13238         58 AMSDRQWAAMMRGDEA--YAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLI-----------KKGD-VVPSN  123 (460)
T ss_pred             hhhHHHHHHHHhCCcc--cCCCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhC-----------CCCC-EEccC
Confidence            4777777777553321  22334477899999999998999999999999999988664           2678 99999


Q ss_pred             CCccCChhhhhhccCCCCcCCCCcCCCCCe--e-EeeC---CCHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHH
Q 013008          198 NSFHGRTMGALALTSKEHYRSPFEPVMPGV--N-FVEY---GNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEF  268 (451)
Q Consensus       198 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~---~d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~  268 (451)
                      |.|..+.......++.....    +..+..  . .-++   -|++.|++.+.+   +++++|+++..++++|..+.+.+.
T Consensus       124 p~~~~~~~~i~~~G~~~v~v----~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~  199 (460)
T PRK13238        124 YHFDTTRAHIELNGATAVDL----VIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMAN  199 (460)
T ss_pred             CcccchHHHHHHcCCEEEEE----eccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHH
Confidence            88876543333333322211    111100  0 0011   289999999973   368888888766666656789999


Q ss_pred             HHHHHHHHHHhCCEEEEeccccC----CCcc---cc-cccccc----cCCCcceeeec-ccccCCcc-ccccccc-HHHH
Q 013008          269 LQFLRDACDDAGALLVFDEVQCG----LGRT---GY-LWAHEH----YGIFPDIMTLA-KPLAGGLP-IGAALVT-EKVA  333 (451)
Q Consensus       269 l~~l~~l~~~~g~llI~DEv~tg----~gr~---G~-~~~~~~----~~~~pdi~t~s-K~lg~G~~-iG~v~~~-~~i~  333 (451)
                      +++|+++|++||++||+|+++..    |+..   |. ......    .+--.|+.++| |-.+. .+ .|+++++ ++++
T Consensus       200 l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~-~~~GG~i~~~d~~l~  278 (460)
T PRK13238        200 LRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAM-VNIGGLLCFRDEDLF  278 (460)
T ss_pred             HHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCC-CcceeEEEcChHHHH
Confidence            99999999999999999997742    1100   10 000000    01125666665 11111 23 3566666 5788


Q ss_pred             hhccCCC---c-cCCCCCcHHH-HHHHHHHHHHhcChHHHHH----------HHhCCCCcceec-ccceeEEEEecC---
Q 013008          334 SAINYGD---H-GSTFAGSPLV-CNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR-GLGLIIGIEFDV---  394 (451)
Q Consensus       334 ~~~~~~~---~-~~t~~~~~~~-~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~-g~G~~~~~~~~~---  394 (451)
                      +.++...   + ..||++.+.. ++|...+|+...++++++.          .+... .+..+. ..|.++.+++..   
T Consensus       279 ~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~  357 (460)
T PRK13238        279 TECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLP  357 (460)
T ss_pred             HHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCC
Confidence            8776442   3 3488886665 4444445553323333322          11221 222232 345565566521   


Q ss_pred             -------ChHHHHHHHH-HCCceeeecC-------C---------CCEEEEeCCC-CCCHHHHHHHHHHHHHHHHH
Q 013008          395 -------SATPVVDACR-DSGLLVLTAG-------K---------GNVVRLVPPL-IISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       395 -------~~~~~~~~l~-~~Gv~~~~~~-------~---------~~~iri~~~~-~~t~e~i~~~l~~l~~~l~~  445 (451)
                             ...+++.+|+ +.||.+.|.+       .         .+.+|+.++- ..|.++++.++++|.+..++
T Consensus       358 ~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~  433 (460)
T PRK13238        358 HIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN  433 (460)
T ss_pred             CCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence                   3567888887 5699887753       0         2578998774 55999999999999987754

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.82  E-value=5.8e-18  Score=170.68  Aligned_cols=306  Identities=15%  Similarity=0.101  Sum_probs=181.8

Q ss_pred             CCHHHHHHHHHHH-hhcccccCC----CCCHHHHHHHH----HHhhccCCCeEE-ecCCHHHHHHHHHHHHHHHhhhcCC
Q 013008          115 GDADWIKAVVDQA-NVLTHVSNM----YYSIPQIELAK----RLVACSFADRVF-FSNTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       115 ~~p~v~~a~~~~~-~~~~~~~~~----~~~~~~~~l~~----~l~~~~~~e~v~-~~~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      -||.+++|+...+ .+++.++.+    ..++...+|++    +++++++.+.++ +++||+.|+.+++.++.        
T Consensus        40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~--------  111 (416)
T PRK13034         40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALL--------  111 (416)
T ss_pred             CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhc--------
Confidence            4899999999985 666543221    13466888888    999999988775 46999999999998764        


Q ss_pred             CCCCCCceEEEEcCCccCChhhhhhcc-CCCCcC-CCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE-ccccCCCCc
Q 013008          185 DSKEPATEFVSFTNSFHGRTMGALALT-SKEHYR-SPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV-EPIQGEGGI  261 (451)
Q Consensus       185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~-ep~~~~~G~  261 (451)
                         .++|+|++.+.+|.+........+ ....+. ..+ ...+.   ....|+++++++++..++++|++ ++++++.  
T Consensus       112 ---~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~---~~~~d~~~le~~l~~~~~klVi~~~~~~g~~--  182 (416)
T PRK13034        112 ---KPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQY-GVDRL---TGLIDYDEVEELAKEHKPKLIIAGFSAYPRE--  182 (416)
T ss_pred             ---CCCCEEEEcCccceeeeecCCcceeccceeeeEEc-ccccc---cCCcCHHHHHHHHhhcCCeEEEECCCccccc--
Confidence               268888888777654222111111 000000 000 00000   01158999999886445677777 5666543  


Q ss_pred             cccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccH-HHHhhccC
Q 013008          262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTE-KVASAINY  338 (451)
Q Consensus       262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~-~i~~~~~~  338 (451)
                       .+    +++|.++|++||++||+|++|+ +|..+.+......+ ..|++  +++|+++|+ ..|++++++ ++.+.++.
T Consensus       183 -~d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~-~GG~v~~~~~~~~~~~~~  254 (416)
T PRK13034        183 -LD----FARFREIADEVGALLMVDMAHI-AGLVAAGEHPNPFP-HAHVVTTTTHKTLRGP-RGGMILTNDEEIAKKINS  254 (416)
T ss_pred             -cC----HHHHHHHHHHcCCEEEEeCccc-ccCcccCCCCCCCC-CceEEEEeCcccCCCC-CCeEEEECcHHHHHHHHh
Confidence             34    8899999999999999999995 55544322111112 35665  567999653 236666654 45454443


Q ss_pred             CCccCCCC-C-cHHHHHHHHHHHHHhcC--hHHHHH-------HHhCCC--Ccceec--ccceeEEEEecC---ChHHHH
Q 013008          339 GDHGSTFA-G-SPLVCNAAIAVLDKISN--PAFLAS-------KLARNP--HVKDVR--GLGLIIGIEFDV---SATPVV  400 (451)
Q Consensus       339 ~~~~~t~~-~-~~~~~aaa~aal~~~~~--~~~~~~-------~~~~~~--~~~~v~--g~G~~~~~~~~~---~~~~~~  400 (451)
                      ....+..+ . ++..++++++.++.++.  .++.++       +.+.+.  .+....  ....+..+.+..   ....+.
T Consensus       255 ~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~~~~~~~~  334 (416)
T PRK13034        255 AVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLSGKDAE  334 (416)
T ss_pred             hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCCCCHHHHH
Confidence            22211111 2 23333444455555432  122333       222111  111111  234555565532   335566


Q ss_pred             HHHHHCCceeeecC---------CCCEEEEeCCC----CCCHHHHHHHHHHHHHHHHH
Q 013008          401 DACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       401 ~~l~~~Gv~~~~~~---------~~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +.|.++||++.+..         ....+|++++.    .++++|++++++.|++++.+
T Consensus       335 ~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        335 QALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD  392 (416)
T ss_pred             HHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            78888999987411         12469998888    78899999999999988764

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.2e-18  Score=163.69  Aligned_cols=328  Identities=20%  Similarity=0.248  Sum_probs=220.2

Q ss_pred             EEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCC
Q 013008           83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFAD  156 (451)
Q Consensus        83 ~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e  156 (451)
                      +++..-+..++ .||+.+++|.|.+.   ||. .++++.+.+...+++++.++.     ++..+.+.+|+++|++++|.|
T Consensus        80 v~e~~~~~~~~-i~G~~~~N~aS~Nf---L~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E  155 (467)
T KOG1358|consen   80 VLESVMLPHVT-IDGKDVLNFASANF---LGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTE  155 (467)
T ss_pred             ccccccCCceE-ecCceeecccchhh---hhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCc
Confidence            35555566655 69999999999766   666 689999999999999865532     233445899999999999988


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE  236 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  236 (451)
                      ..++.+-|..++..++.+   |++         +.+|++.+..-+=....++.+            ....+.++.+||++
T Consensus       156 ~aivYs~gF~ti~S~ipa---fsK---------rGDIi~~de~~nfaIq~Glql------------SRS~i~~Fkhndm~  211 (467)
T KOG1358|consen  156 DAIVYSYGFSTIESAIPA---FSK---------RGDIIFVDEAVNFAIQKGLQL------------SRSTISYFKHNDME  211 (467)
T ss_pred             ceeeeccccchhhhcchh---hhc---------cCcEEEEehhhhHHHHHHHhh------------hhheeEEecCCCHH
Confidence            777777799999999994   442         455666655433222121111            12446678889999


Q ss_pred             HHHHhcCCCC------------eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-C-CCccccccccc
Q 013008          237 ATRKLIQPGK------------TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHE  302 (451)
Q Consensus       237 ~le~~l~~~~------------~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~  302 (451)
                      +||+.+....            ...|++|.++.|.|.++|    +++|.++..||...+|.||.++ | +|++|++ ..+
T Consensus       212 ~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrG-vte  286 (467)
T KOG1358|consen  212 DLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLSFGVLGKTGRG-VTE  286 (467)
T ss_pred             HHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccccccccccCcc-ccc
Confidence            9998875211            568899999999999999    9999999999999999999986 2 3455554 578


Q ss_pred             ccCCC---cceeeec--ccccCCcccccccccHHHHhhccCCCccCCCC--CcHHHHHHHHHHHHHhcC-hHHHHHHHhC
Q 013008          303 HYGIF---PDIMTLA--KPLAGGLPIGAALVTEKVASAINYGDHGSTFA--GSPLVCNAAIAVLDKISN-PAFLASKLAR  374 (451)
Q Consensus       303 ~~~~~---pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~--~~~~~~aaa~aal~~~~~-~~~~~~~~~~  374 (451)
                      |+++.   .|+++.|  -+++.  ..|+++++.-+.+.-+-...++.|+  .+|....||..++.+++. ++..+.+.+.
T Consensus       287 H~~v~~~~iDiv~~sm~~alas--~GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k  364 (467)
T KOG1358|consen  287 HFGVPITDIDIVTASMETALAS--GGGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAK  364 (467)
T ss_pred             cCCCCccceeeeeecccccccc--cCceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhcc
Confidence            88875   4666554  45543  2266667655555433334455555  457888888888887754 3433332221


Q ss_pred             ----CCCcce-----ecc--cceeEEEEecC----------ChHHHHHHHHHCCceeeecC---------CCCEEEEeCC
Q 013008          375 ----NPHVKD-----VRG--LGLIIGIEFDV----------SATPVVDACRDSGLLVLTAG---------KGNVVRLVPP  424 (451)
Q Consensus       375 ----~~~~~~-----v~g--~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~  424 (451)
                          ++....     +.+  ...+.-+.+..          .-.++++.++.+|+++....         -...+|++.+
T Consensus       365 ~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~  444 (467)
T KOG1358|consen  365 VAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVS  444 (467)
T ss_pred             ccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEe
Confidence                111111     111  22233333321          12356677777788776431         1246999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q 013008          425 LIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       425 ~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..+++|||+++.+.|+++...
T Consensus       445 a~~seeel~ra~~~ik~~~~~  465 (467)
T KOG1358|consen  445 AGMSEEELERAAELIKEVASA  465 (467)
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999987654

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.82  E-value=1e-17  Score=167.18  Aligned_cols=302  Identities=15%  Similarity=0.132  Sum_probs=186.9

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHhhccCC--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~--e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      .+|.+.+++...+.........+.  .....++.++++++++.  +.+++++||++++..++++++..... +    .++
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~----~~g  106 (373)
T TIGR03812        32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLARE-E----KRT  106 (373)
T ss_pred             chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhc-c----CCC
Confidence            667778888776554221122122  23357888999999883  46788999999999998876543210 0    135


Q ss_pred             ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCccccC
Q 013008          191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSAT  265 (451)
Q Consensus       191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~  265 (451)
                      +.|++.+++|+.+... ....|.            .+..++.     .|++++++.+.++..+++++.|. ++.|.+.+ 
T Consensus       107 ~~vl~~~~~h~~~~~~-~~~~G~------------~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~-~~tG~~~~-  171 (373)
T TIGR03812       107 PNIIVPESAHFSFEKA-AEMLGL------------ELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGT-TELGQIDD-  171 (373)
T ss_pred             cEEEECCcchHHHHHH-HHHcCC------------eEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCC-CCCCccCC-
Confidence            7899988877654322 222121            1222222     38999999987555566767664 55677666 


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeccccCCCcccc--c-c---cccccCCCcceeeec--ccccCCccccccc-ccHHHHhhc
Q 013008          266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--L-W---AHEHYGIFPDIMTLA--KPLAGGLPIGAAL-VTEKVASAI  336 (451)
Q Consensus       266 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~-~---~~~~~~~~pdi~t~s--K~lg~G~~iG~v~-~~~~i~~~~  336 (451)
                         +++|.++|++||+++|+|++|.++ ..+.  + .   ..+..-...|.++++  |...++.|.|+++ .++++.+.+
T Consensus       172 ---~~~i~~l~~~~~~~livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l  247 (373)
T TIGR03812       172 ---IEELSKIALENGIYLHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYL  247 (373)
T ss_pred             ---HHHHHHHHHHcCCeEEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhh
Confidence               999999999999999999999643 1110  0 0   011100134555553  7333457787655 577777766


Q ss_pred             cCCC--ccCC------CCCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCcceecccceeEEEEecCC
Q 013008          337 NYGD--HGST------FAGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKDVRGLGLIIGIEFDVS  395 (451)
Q Consensus       337 ~~~~--~~~t------~~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~v~g~G~~~~~~~~~~  395 (451)
                      ....  ....      .+.++..++++.++|+.+.++++   .++          .+++++....+.+...++.+.+. .
T Consensus       248 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~-~  326 (373)
T TIGR03812       248 SVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLNIVAFEVD-D  326 (373)
T ss_pred             cccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCceEEEEEeC-C
Confidence            3211  0110      12345677888888887655432   222          12233322122233444445443 3


Q ss_pred             hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      ...+.+.|.++|+++.+...+..+|++++..+|++|+++++++|++
T Consensus       327 ~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       327 PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            5679999999999998764347899999988999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.82  E-value=1e-18  Score=173.82  Aligned_cols=197  Identities=18%  Similarity=0.137  Sum_probs=145.3

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++++++.+.+.+++++||++|+..+++.+..           ++++||+..+.|++.........  
T Consensus        34 y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~-----------~gd~Vl~~~~~y~~~~~~~~~~~--  100 (369)
T cd00614          34 YSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLK-----------AGDHVVASDDLYGGTYRLFERLL--  100 (369)
T ss_pred             eECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcC-----------CCCEEEECCCCcchHHHHHHHHH--
Confidence            44556777999999999999988899999999999999997652           68899999999877542211110  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++.+|++++++++++ ++++|++|+++++.|.+.+    +++|.++|++||+++|+|+++... 
T Consensus       101 -------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~-  167 (369)
T cd00614         101 -------PKLGIEVTFVDPDDPEALEAAIKP-ETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATP-  167 (369)
T ss_pred             -------hhcCeEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcch-
Confidence                   011234566777889999999965 6789999999888888776    999999999999999999998532 


Q ss_pred             cccccccccccCCCccee--eecccccC-C-cccccccccH-HHHhhccCCCccCCCCCcHHHHHHHHHHHHH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDK  361 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~  361 (451)
                      ...     ......+|++  +++|.++| | .++|++++++ ++++.++..........+|+.+++++..|+.
T Consensus       168 ~~~-----~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t  235 (369)
T cd00614         168 YLQ-----RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT  235 (369)
T ss_pred             hcC-----ChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC
Confidence            111     1122345666  77899986 5 7889999976 8888775432223445678887776665543

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN02368 alanine transaminase

Probab=99.82  E-value=4.3e-19  Score=177.86  Aligned_cols=202  Identities=10%  Similarity=0.005  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008          140 IPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH  215 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~  215 (451)
                      +.++++++++.+..+    .++|++|+|+++|+..+++++..          +++|.|++++|+|..+.......+....
T Consensus       111 ~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~----------~pGd~Vli~~P~Y~~y~~~~~~~g~~~v  180 (407)
T PLN02368        111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR----------GEKDGVLVPVPQYPLYSATISLLGGTLV  180 (407)
T ss_pred             HHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC----------CCCCEEEEeCCCCccHHHHHHHcCCEEE
Confidence            346677777766544    67999999999999999886541          1589999999999988755443332211


Q ss_pred             cCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeE-EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008          216 YRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTA-AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ  289 (451)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a-avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~  289 (451)
                       .   .+...+..+  .-|+++|++.+++     .+++ +++++|.| ++| .+++.+.+++|.++|++||++||+||+|
T Consensus       181 -~---v~~~~~~~~--~~d~~~le~~i~~~~~~~~~~k~l~l~nP~N-PTG-~v~s~e~l~~l~~~a~~~~~~II~DE~Y  252 (407)
T PLN02368        181 -P---YYLEESENW--GLDVNNLRQSVAQARSKGITVRAMVIINPGN-PTG-QCLSEANLREILKFCYQERLVLLGDEVY  252 (407)
T ss_pred             -E---EecccccCC--CCCHHHHHHHHHHHhhcCCCeEEEEEECCCC-CCC-ccCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence             1   111111001  0278999988852     1355 56666744 445 4679999999999999999999999999


Q ss_pred             cCCCcccc-cc-cc-ccc-C---------CCcceeeecccc-c-CCccccccc---ccHHHHhhccCCCccCCCCCcHHH
Q 013008          290 CGLGRTGY-LW-AH-EHY-G---------IFPDIMTLAKPL-A-GGLPIGAAL---VTEKVASAINYGDHGSTFAGSPLV  351 (451)
Q Consensus       290 tg~gr~G~-~~-~~-~~~-~---------~~pdi~t~sK~l-g-~G~~iG~v~---~~~~i~~~~~~~~~~~t~~~~~~~  351 (451)
                      ..+.+.+. .+ .. ... +         ...-+-+|||++ + .|||+||++   +++++++.+.... ..+++.|.++
T Consensus       253 ~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~~~~~~~~~~  331 (407)
T PLN02368        253 QQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-SIALSPNVSG  331 (407)
T ss_pred             cccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-cccCCCCcHH
Confidence            88754442 11 11 110 1         112234789998 5 699999998   4888888876542 3456788899


Q ss_pred             HHHHHHHHH
Q 013008          352 CNAAIAVLD  360 (451)
Q Consensus       352 ~aaa~aal~  360 (451)
                      +.|+.++|+
T Consensus       332 Q~aa~~~l~  340 (407)
T PLN02368        332 QIFMGLMVN  340 (407)
T ss_pred             HHHHHHHhC
Confidence            999998885

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.4e-19  Score=171.12  Aligned_cols=277  Identities=16%  Similarity=0.167  Sum_probs=195.4

Q ss_pred             CCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCc
Q 013008          137 YYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY  216 (451)
Q Consensus       137 ~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~  216 (451)
                      +.+..+.++++..+++.+.+..+.++-|..+|..-+..+.            ++...|+.+.-.|++......+++    
T Consensus       179 G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~------------~~gsLIiSDelNHaSi~~GaRLSg----  242 (519)
T KOG1357|consen  179 GTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLL------------GKGSLIISDELNHASLITGARLSG----  242 (519)
T ss_pred             ccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcceee------------cCCcceeeccccchheeccccccC----
Confidence            3456699999999999998888888888888888777666            355677888888988766555554    


Q ss_pred             CCCCcCCCCCeeEeeCCCHHHHHHhcC------------CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEE
Q 013008          217 RSPFEPVMPGVNFVEYGNIEATRKLIQ------------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLV  284 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~~d~~~le~~l~------------~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI  284 (451)
                              ..++.+.|||+++||++|+            +.+...|++|.+.++.|.++.    |+++.++++||.++|+
T Consensus       243 --------AtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~  310 (519)
T KOG1357|consen  243 --------ATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLY  310 (519)
T ss_pred             --------ceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEE
Confidence                    3456788999999999986            124568999999999999998    9999999999999999


Q ss_pred             EeccccC--CCcccccccccccCCCc---cee--eecccccCCcccccccccHHHHhhccCCCccCCCC--CcHHHHHHH
Q 013008          285 FDEVQCG--LGRTGYLWAHEHYGIFP---DIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFA--GSPLVCNAA  355 (451)
Q Consensus       285 ~DEv~tg--~gr~G~~~~~~~~~~~p---di~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~--~~~~~~aaa  355 (451)
                      .||+|+.  .|++|.+ ..+.+++.|   ||+  +|.|++++  ..|++.+++++++.++......+++  .+|+.+.-.
T Consensus       311 lDEAHSiGA~g~tGrg-vce~~g~d~~dvDImMGtftKSfga--~GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~  387 (519)
T KOG1357|consen  311 LDEAHSIGAMGATGRG-VCEYFGVDPEDVDIMMGTFTKSFGA--AGGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQI  387 (519)
T ss_pred             eeccccccccCCCCcc-eeeccCCCchhheeecceehhhccc--ccceecCcHHHHhhhccCCCceeecccCChHHHHHH
Confidence            9999974  4566653 567777754   443  78899974  1388999999999987654444443  456666667


Q ss_pred             HHHHHHhcCh---HHHHH----HHhCCC-CcceecccceeEEE---------Ee--cCChHHHHHHHHHCCceeeecCCC
Q 013008          356 IAVLDKISNP---AFLAS----KLARNP-HVKDVRGLGLIIGI---------EF--DVSATPVVDACRDSGLLVLTAGKG  416 (451)
Q Consensus       356 ~aal~~~~~~---~~~~~----~~~~~~-~~~~v~g~G~~~~~---------~~--~~~~~~~~~~l~~~Gv~~~~~~~~  416 (451)
                      +.+++.+..+   +..++    ++++.. .....+..|+++.=         -+  ...-..+.+.|+++++.+...+.+
T Consensus       388 ~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgfP  467 (519)
T KOG1357|consen  388 LTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFP  467 (519)
T ss_pred             HHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCcccccHHHHHHHhcCceEEEEeCC
Confidence            7778777532   12111    222211 11112233332210         01  123356778899987766554432


Q ss_pred             ------CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          417 ------NVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       417 ------~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                            ...|++.+..++.|+++++++.+++.-+
T Consensus       468 atpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~  501 (519)
T KOG1357|consen  468 ATPLLESRARFCLSASHTKEDLDRALEVIDRVGD  501 (519)
T ss_pred             CchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence                  3469999999999999999999987653

>PLN02397 aspartate transaminase

Probab=99.82  E-value=4e-18  Score=172.49  Aligned_cols=239  Identities=11%  Similarity=0.081  Sum_probs=142.0

Q ss_pred             CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC-CCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccC
Q 013008          189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSAT  265 (451)
Q Consensus       189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~  265 (451)
                      ++|.|++.+|+|.++.......+......    ++. ++..   -.|++.+++.+..  .+..++++...++++| .+++
T Consensus       141 pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v----~l~~~~~~---~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG-~v~s  212 (423)
T PLN02397        141 PGSTIYIPNPTWGNHHNIFRDAGVPVRTY----RYYDPKTR---GLDFDGLLEDLKAAPDGSFVLLHACAHNPTG-VDPT  212 (423)
T ss_pred             CCCEEEEeCCCchhHHHHHHHcCCeEEEe----ecccCcCC---ccCHHHHHHHHHhCCCCCEEEEeCCCCCCCC-CCCC
Confidence            58999999999988865544433322110    110 0000   0277877777652  3344444443444445 4679


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccccc---C-CCcceeeeccccc-CCccccccc---ccHHHHh
Q 013008          266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHEHY---G-IFPDIMTLAKPLA-GGLPIGAAL---VTEKVAS  334 (451)
Q Consensus       266 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~~---~-~~pdi~t~sK~lg-~G~~iG~v~---~~~~i~~  334 (451)
                      .+.+++|.++|++||+++|+||+|.+|...+.   ......+   + ...-+.+|||+++ .|+|+||++   .++++++
T Consensus       213 ~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~  292 (423)
T PLN02397        213 PEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAV  292 (423)
T ss_pred             HHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHH
Confidence            99999999999999999999999999854331   1111111   1 1222347999999 599999984   3555544


Q ss_pred             h----ccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHH---HHH--------------HHhCCC---Cccee-cccceeE
Q 013008          335 A----INYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAF---LAS--------------KLARNP---HVKDV-RGLGLII  388 (451)
Q Consensus       335 ~----~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~---~~~--------------~~~~~~---~~~~v-~g~G~~~  388 (451)
                      .    +.........+.+.+++.++.++|+.-. .+.+   +++              .++.+.   .+..+ +..|+++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl  372 (423)
T PLN02397        293 RVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFS  372 (423)
T ss_pred             HHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEE
Confidence            3    2221122233456677777776664210 0011   111              122221   12222 3346666


Q ss_pred             EEEecCChHHHHHHHHH-CCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          389 GIEFDVSATPVVDACRD-SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       389 ~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      |+.++   .++++.|++ .||++.+.   +  |+++. ..+++++++++++|+++++
T Consensus       373 ~~~l~---~~~~~~Ll~~~~V~v~~~---~--Ri~~~-~~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        373 FTGLN---KEQVDRMTKEYHIYMTRD---G--RISMA-GLSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             ecCCC---HHHHHHHHHhCCEEECCC---C--eEEEe-eCCHHHHHHHHHHHHHHHh
Confidence            66653   458888875 59998743   2  77543 3799999999999999974

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.82  E-value=8.6e-18  Score=161.67  Aligned_cols=323  Identities=19%  Similarity=0.206  Sum_probs=202.5

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhc-ccccCC--CCCH---HHHHHHHHHhhccC--CCeEEecCCHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSNM--YYSI---PQIELAKRLVACSF--ADRVFFSNTGTEANEA  170 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~--~~~~---~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~  170 (451)
                      -|+|..+...      -+|++.+++...+... ++.+..  +...   ..++-.+.+++.++  .+.|+||++|||++..
T Consensus         3 iYlD~~ATTp------~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNl   76 (386)
T COG1104           3 IYLDNAATTP------VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNL   76 (386)
T ss_pred             ccccccccCC------CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHH
Confidence            4788777554      5799999999998774 221111  1111   13455566777776  6799999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      ||+.+.......      ++.+=|+.+..-|......+.......+.--|.|...+-..    |+++|+++|++ ++.+|
T Consensus        77 aI~g~~~a~~~~------~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v----~~e~L~~al~~-~T~LV  145 (386)
T COG1104          77 AIKGAALAYRNA------QKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLV----DLEQLEEALRP-DTILV  145 (386)
T ss_pred             HHHhhHHhhhcc------cCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeE----cHHHHHHhcCC-CceEE
Confidence            999653222111      13334555567777766554422111111111122221111    89999999985 58899


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccc-ccCCccccccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKP-LAGGLPIGAALVT  329 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~-lg~G~~iG~v~~~  329 (451)
                      .+.-+|++.|++.|    +++|.++|+++|+++++|-||+ +|+.    ..+......|+++||-. ++|.-.+|++..+
T Consensus       146 Sim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gki----pi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~  216 (386)
T COG1104         146 SIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKI----PIDLEELGVDLLSFSAHKFGGPKGIGALYVR  216 (386)
T ss_pred             EEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCce----eccccccCcceEEeehhhccCCCceEEEEEC
Confidence            99999999999999    9999999999999999999996 6554    23333345899999843 3333568888776


Q ss_pred             HHHHhh--ccCC-----CccCCCCCcHHHHHHHHHHHHHhcCh---------HHHHH----HHhCCCCcce----ecccc
Q 013008          330 EKVASA--INYG-----DHGSTFAGSPLVCNAAIAVLDKISNP---------AFLAS----KLARNPHVKD----VRGLG  385 (451)
Q Consensus       330 ~~i~~~--~~~~-----~~~~t~~~~~~~~aaa~aal~~~~~~---------~~~~~----~~~~~~~~~~----v~g~G  385 (451)
                      +.+.-.  +..+     ..++|-  |..+.++.-+|++...++         .+.++    +.+..|.+.-    .....
T Consensus       217 ~~~~~~p~i~GGgQE~g~RsGTe--nv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP  294 (386)
T COG1104         217 PGVRLEPLIHGGGQERGLRSGTE--NVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLP  294 (386)
T ss_pred             CCCccCceeccCcCCCCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCC
Confidence            654321  1111     223333  444444444555432111         11111    3333342211    11122


Q ss_pred             eeEEEEec-CChHHHHHHHHHCCceeeecC-----------------C-----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          386 LIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------------K-----GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       386 ~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------------~-----~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      ..+.+.|. ...+.+...|-.+||.+..+.                 .     ...+||++....|+||++.+++.|.++
T Consensus       295 ~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~  374 (386)
T COG1104         295 NILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEI  374 (386)
T ss_pred             CeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            34445553 456667777777799887541                 0     246999999999999999999999999


Q ss_pred             HHHHhhc
Q 013008          443 LPVLDSN  449 (451)
Q Consensus       443 l~~~~~~  449 (451)
                      +++++..
T Consensus       375 i~~lr~~  381 (386)
T COG1104         375 IKRLREL  381 (386)
T ss_pred             HHHHhhh
Confidence            9998753

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.81  E-value=1.4e-17  Score=168.98  Aligned_cols=319  Identities=15%  Similarity=0.110  Sum_probs=201.3

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CC------CHHHHHHHHHHhhccC---CCeEEecCCHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YY------SIPQIELAKRLVACSF---ADRVFFSNTGTE  166 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~------~~~~~~l~~~l~~~~~---~e~v~~~~sG~e  166 (451)
                      +.-|+|..+      .|..++.|.+++.+.+.+....... .+      .....++.+.++++++   .+.|+|++|+++
T Consensus        32 ~~iyLd~a~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  105 (424)
T PLN02855         32 KLVYLDNAA------TSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE  105 (424)
T ss_pred             CeEEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence            356788644      3456788999998877654221111 11      1124577788888887   258999999999


Q ss_pred             HHHHHHHHHH-HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc---cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhc
Q 013008          167 ANEAAIKFAR-KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL---TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI  242 (451)
Q Consensus       167 A~~~al~~a~-~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l  242 (451)
                      ++..+++... ...        .++++||+.++.|++........   .+....   ..+..++..    .|++++++.+
T Consensus       106 al~~i~~~~~~~~~--------~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~---~v~~~~~~~----~~~~~l~~~i  170 (424)
T PLN02855        106 AINLVAYTWGLANL--------KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLK---FVGLTPDEV----LDVEQLKELL  170 (424)
T ss_pred             HHHHHHHHhhhhcC--------CCcCEEEECCCccHHHHHHHHHHHHHcCCEEE---EEecCCCCC----cCHHHHHHHh
Confidence            9999887531 111        15788999988776543221111   111110   011111110    2789999999


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCC
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGG  320 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G  320 (451)
                      .+ ++++|++..+++++|.+.+    +++|.++|++||+++|+|++|. +|..  .....  ...+|++  ++.|.+|. 
T Consensus       171 ~~-~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K~~gp-  239 (424)
T PLN02855        171 SE-KTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM--PVDVQ--TLGADFLVASSHKMCGP-  239 (424)
T ss_pred             cc-CceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCCch--hcCCCEEEeecccccCC-
Confidence            65 6778888888888888877    8999999999999999999994 4322  11122  2346766  56795442 


Q ss_pred             cccccccccHHHHhhccCCCccC------------------CC---CCcHHHHHHHHHHHHHhcChH---HHHH------
Q 013008          321 LPIGAALVTEKVASAINYGDHGS------------------TF---AGSPLVCNAAIAVLDKISNPA---FLAS------  370 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~------------------t~---~~~~~~~aaa~aal~~~~~~~---~~~~------  370 (451)
                      -.+|++++++++++.+.+...++                  .|   +.+....++..++++.+.+.+   ..++      
T Consensus       240 ~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~  319 (424)
T PLN02855        240 TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGT  319 (424)
T ss_pred             CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            35899999998887765321000                  01   134455666667777654321   1111      


Q ss_pred             ----HHhCCCCcceec-------ccceeEEEEec-CChHHHHHHHHHC-CceeeecC-----------CCCEEEEeCCCC
Q 013008          371 ----KLARNPHVKDVR-------GLGLIIGIEFD-VSATPVVDACRDS-GLLVLTAG-----------KGNVVRLVPPLI  426 (451)
Q Consensus       371 ----~~~~~~~~~~v~-------g~G~~~~~~~~-~~~~~~~~~l~~~-Gv~~~~~~-----------~~~~iri~~~~~  426 (451)
                          .+++++.+.-+.       ..+.++.+.+. ....++.+.|.++ ||.+..+.           ....+|++++..
T Consensus       320 ~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~y  399 (424)
T PLN02855        320 YLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFY  399 (424)
T ss_pred             HHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccC
Confidence                223444332221       12446666664 4567888888887 99887532           125799999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHh
Q 013008          427 ISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       427 ~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .|++|++++++.|+++++.++
T Consensus       400 nt~~di~~l~~~l~~~~~~~~  420 (424)
T PLN02855        400 NTKEEVDAFIHALKDTIAFFS  420 (424)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987765

>PRK02948 cysteine desulfurase; Provisional

Probab=99.81  E-value=1.5e-17  Score=166.51  Aligned_cols=316  Identities=16%  Similarity=0.117  Sum_probs=193.0

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC------CHHHHHHHHHHhhccC--CCeEEecCCHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY------SIPQIELAKRLVACSF--ADRVFFSNTGTEANEA  170 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~  170 (451)
                      -|+|..+      .|..++.+.+++.+.++.........+      ....+++++.++++++  .+.|++++|+++++..
T Consensus         2 ~yld~a~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~   75 (381)
T PRK02948          2 IYLDYAA------TTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYL   75 (381)
T ss_pred             EeccCCC------CCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHH
Confidence            3666444      445788999999988765322111111      1235677888888886  6789999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc---cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCe
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL---TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT  247 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  247 (451)
                      +++.+.....       .+++.|++.. ..|.........   .+....   ..+.....    ..|+++|++.+.+ ++
T Consensus        76 ~~~~~~~~~~-------~~g~~vv~~~-~~h~s~~~~~~~~~~~g~~v~---~v~~~~~~----~~d~~~l~~~l~~-~~  139 (381)
T PRK02948         76 AIQSLLNALP-------QNKKHIITTP-MEHASIHSYFQSLESQGYTVT---EIPVDKSG----LIRLVDLERAITP-DT  139 (381)
T ss_pred             HHHHHHHhcc-------CCCCEEEECC-cccHHHHHHHHHHHhCCCEEE---EEeeCCCC----CCCHHHHHHhcCC-CC
Confidence            9987653110       1355566544 444443332211   111110   01111110    1388999999864 56


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCccccc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGA  325 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~  325 (451)
                      .+|+++.+++++|.+.+    +++|.++|+++|+++|+|++++ +|...  .....++  .|++  +++|.+|. ..+|+
T Consensus       140 ~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~--~~~~~~~--~d~~~~s~~K~~gp-~G~G~  209 (381)
T PRK02948        140 VLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLP--IDVFEMG--IDSLSVSAHKIYGP-KGVGA  209 (381)
T ss_pred             EEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-ccccc--cCcccCC--CCEEEecHHhcCCC-CcEEE
Confidence            78888888888888877    8999999999999999998875 65332  1222333  5555  67797763 22688


Q ss_pred             ccccHHH-HhhccCC---C-ccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH-------H---HhCCCC-cceecc----
Q 013008          326 ALVTEKV-ASAINYG---D-HGSTFAGSPLVCNAAIAVLDKISN--PAFLAS-------K---LARNPH-VKDVRG----  383 (451)
Q Consensus       326 v~~~~~i-~~~~~~~---~-~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~-------~---~~~~~~-~~~v~g----  383 (451)
                      +++++++ +..+...   . ....++.|+++++++.++++.+.+  ++..++       +   ++.++. +. ..+    
T Consensus       210 l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~-~~~~~~~  288 (381)
T PRK02948        210 VYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIE-VEGHSTS  288 (381)
T ss_pred             EEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEE-EeCCCcc
Confidence            7777664 1111110   0 012345678888888888876421  111111       1   222221 11 111    


Q ss_pred             -cceeEEEEec-CChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          384 -LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       384 -~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                       ...++.+.+. ....++...|.++||.+..+..                      .+.+|+++...+|+||++++++.|
T Consensus       289 ~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l  368 (381)
T PRK02948        289 CLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHAL  368 (381)
T ss_pred             CcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHH
Confidence             1123333443 3466788888889999985320                      257999999999999999999999


Q ss_pred             HHHHHHHh
Q 013008          440 CKTLPVLD  447 (451)
Q Consensus       440 ~~~l~~~~  447 (451)
                      +++++++.
T Consensus       369 ~~~~~~~~  376 (381)
T PRK02948        369 ETIGNQFY  376 (381)
T ss_pred             HHHHHHHh
Confidence            99887654

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.81  E-value=1.5e-17  Score=166.08  Aligned_cols=299  Identities=15%  Similarity=0.126  Sum_probs=184.9

Q ss_pred             CCHHHHHHHHHHHhhcccc--cCCCC-----CHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 013008          115 GDADWIKAVVDQANVLTHV--SNMYY-----SIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~--~~~~~-----~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      .++.+.+++.+.+++....  ...+.     .....++.+.++++++.   +.|++++|+++|+..++....        
T Consensus        12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--------   83 (376)
T TIGR01977        12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLL--------   83 (376)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhcc--------
Confidence            5678999999888764311  11121     13366888889998872   479999999999999887532        


Q ss_pred             CCCCCCceEEEEcCCccCChhhhhhc---cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008          185 DSKEPATEFVSFTNSFHGRTMGALAL---TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGI  261 (451)
Q Consensus       185 ~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~  261 (451)
                         .++++|++.++.|+.........   .+....   ..+...+    ...|++++++.+.+ ++++|++..+++++|.
T Consensus        84 ---~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~----~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~  152 (376)
T TIGR01977        84 ---KEGDHVITTPMEHNSVARPLECLKEQIGVEIT---IVKCDNE----GLISPERIKRAIKT-NTKLIVVSHASNVTGT  152 (376)
T ss_pred             ---CCCCEEEECcchhhHHHHHHHHHHHHcCcEEE---EEecCCC----CCcCHHHHHHhcCC-CCeEEEEECCCCCccc
Confidence               15788998887765433211111   111110   0011111    01278999999965 5677777777777888


Q ss_pred             cccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHH-HhhccC
Q 013008          262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKV-ASAINY  338 (451)
Q Consensus       262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i-~~~~~~  338 (451)
                      +.+    +++|.++|+++|+++|+|++++ +|...  +...  ...+|++++|  |.+++.-..|+++.+++. +..+..
T Consensus       153 ~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~  223 (376)
T TIGR01977       153 ILP----IEEIGELAQENGIFFILDAAQT-AGVIP--IDMT--ELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKS  223 (376)
T ss_pred             cCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC--CCch--hcCCCEEEecccccccCCCCceEEEEcCCcCcCceec
Confidence            777    8999999999999999999995 54331  1112  2347777554  988753345666555442 222211


Q ss_pred             CCc---c-------------CCCCCcHHHHHHHHHHHHHhcChH---HHHH----------HHhCCCCcceec-----cc
Q 013008          339 GDH---G-------------STFAGSPLVCNAAIAVLDKISNPA---FLAS----------KLARNPHVKDVR-----GL  384 (451)
Q Consensus       339 ~~~---~-------------~t~~~~~~~~aaa~aal~~~~~~~---~~~~----------~~~~~~~~~~v~-----g~  384 (451)
                      ...   .             ...+.+....++..++++.+.+.+   ..++          .+++.+.+.-+.     ..
T Consensus       224 ~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~  303 (376)
T TIGR01977       224 GGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANR  303 (376)
T ss_pred             CCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcccc
Confidence            100   0             011234556667777887765432   2222          222334322111     13


Q ss_pred             ceeEEEEec-CChHHHHHHHHHC-CceeeecC-------------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          385 GLIIGIEFD-VSATPVVDACRDS-GLLVLTAG-------------KGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       385 G~~~~~~~~-~~~~~~~~~l~~~-Gv~~~~~~-------------~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      +.++.+.+. .+..++.+.|.++ ||.+..+.             ..+.+|+++...+|++|+++++++|++
T Consensus       304 ~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       304 VGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             CCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            456666664 4567899999887 88886532             136799999999999999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PLN02242 methionine gamma-lyase

Probab=99.80  E-value=6.6e-18  Score=169.76  Aligned_cols=179  Identities=15%  Similarity=0.189  Sum_probs=131.1

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .+..+.++...+|+++++++++.+.+++++||++|+..++..+..           ++|.||+.++.|.+..........
T Consensus        69 ~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~~-----------~GD~Vl~~~~~Y~~~~~~~~~~~~  137 (418)
T PLN02242         69 IYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCS-----------SGGHVVASNTLYGGTHALLAHFLP  137 (418)
T ss_pred             cccCCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC-----------CCCEEEEcCCcHHHHHHHHHHhhh
Confidence            345556777999999999999999999999999999999987652           689999999988654322111000


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                              ......+.+++..|++++++++++.++++|++|.++++.|.+.+    +++|.++|++||+++|+||+|+.+
T Consensus       138 --------~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~  205 (418)
T PLN02242        138 --------RKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPM  205 (418)
T ss_pred             --------hccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCcc
Confidence                    00112234455568999999997545788889988888887765    999999999999999999999654


Q ss_pred             CcccccccccccCCCcceeeecccccC-Ccc-cccccccHHHHhhccCC
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLP-IGAALVTEKVASAINYG  339 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~-iG~v~~~~~i~~~~~~~  339 (451)
                      . ...    ..++...-+.++||.+++ |.+ .|++++++++++.+...
T Consensus       206 ~-~~~----~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~  249 (418)
T PLN02242        206 V-LSP----ARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDL  249 (418)
T ss_pred             C-CCH----HHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHH
Confidence            2 211    122432333478999986 666 58999999988887643

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.80  E-value=1.2e-17  Score=166.06  Aligned_cols=270  Identities=12%  Similarity=0.122  Sum_probs=176.7

Q ss_pred             HHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhh-hhccCCCCc
Q 013008          142 QIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA-LALTSKEHY  216 (451)
Q Consensus       142 ~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~-~~~~~~~~~  216 (451)
                      ..++.+.++++++.    +.+++++||++|++.++..+..           +++++|+..+++++..... ....+.   
T Consensus        37 ~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~-----------~~~~vlv~~~~~~~~~~~~~a~~~g~---  102 (363)
T TIGR02326        37 VEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP-----------KDGKLLVVINGAYGARIVQIAEYLGI---  102 (363)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC-----------CCCeEEEEeCChhhHHHHHHHHHcCC---
Confidence            66777888888872    3699999999999999986541           4678888888887764211 111111   


Q ss_pred             CCCCcCCCCCeeEeeC-----CCHHHHHHhcCCC-CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008          217 RSPFEPVMPGVNFVEY-----GNIEATRKLIQPG-KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC  290 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~-~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  290 (451)
                               .+..++.     -|++++++++..+ ++..|.+..+.+++|.+.+    +++|.++|++||+++|+|++++
T Consensus       103 ---------~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~~~~  169 (363)
T TIGR02326       103 ---------PHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDAMSS  169 (363)
T ss_pred             ---------ceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEcccc
Confidence                     1222221     2789999998742 4555555555666788777    8999999999999999999985


Q ss_pred             CCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhccCCC------------------ccCCCCCcHH
Q 013008          291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGD------------------HGSTFAGSPL  350 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~------------------~~~t~~~~~~  350 (451)
                       +|..  ......+  .+|++  +++|+++++..+|+++++++.++.+.+..                  ....|..++.
T Consensus       170 -~g~~--~~~~~~~--~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~  244 (363)
T TIGR02326       170 -FGGI--PIDIAEL--HIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTH  244 (363)
T ss_pred             -ccCc--ccchhhc--CccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHH
Confidence             5432  2223333  35655  56799976556799999988776543210                  0123456777


Q ss_pred             HHHHHHHHHHHhcChH----HHHH----------HHhCCCCcceec----ccceeEEEEec----CChHHHHHHHHHCCc
Q 013008          351 VCNAAIAVLDKISNPA----FLAS----------KLARNPHVKDVR----GLGLIIGIEFD----VSATPVVDACRDSGL  408 (451)
Q Consensus       351 ~~aaa~aal~~~~~~~----~~~~----------~~~~~~~~~~v~----g~G~~~~~~~~----~~~~~~~~~l~~~Gv  408 (451)
                      .+.+..++++.+..+.    ..++          .++.++ +..+.    ..+.+.++.+.    ....++.+.|.++||
T Consensus       245 ~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi  323 (363)
T TIGR02326       245 VVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALG-FEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGF  323 (363)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-CeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCE
Confidence            7777777787653321    1111          112222 11111    12334555553    245678899999999


Q ss_pred             eeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          409 LVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       409 ~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      .+.++..  .+.+|+++...++.|++++++++|++++.
T Consensus       324 ~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       324 VIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             EEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            9987742  36799987666799999999999998763

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.80  E-value=9.5e-17  Score=159.15  Aligned_cols=315  Identities=14%  Similarity=0.085  Sum_probs=183.0

Q ss_pred             CEEEeeccCcccccCCCC--CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHG--DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a  175 (451)
                      +.+|+..+-.  ..||-+  ++++.+++.+.++.+.     ...+...+++++++++++.+++++++|+++|+..+++.+
T Consensus         8 ~~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al   80 (363)
T TIGR01437         8 KKVINASGKM--TILGVSTVSDEVADAQKRGAQNYF-----EIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAV   80 (363)
T ss_pred             ceEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHH
Confidence            3455533333  457764  8999999999876521     123447889999999999889999999999999999977


Q ss_pred             HHHhhh-----cCCCCCCCCceEEEEcCCccCCh---hhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCe
Q 013008          176 RKFQRH-----SNPDSKEPATEFVSFTNSFHGRT---MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT  247 (451)
Q Consensus       176 ~~~~~~-----~~~~~~~~~~~ii~~~~~yhg~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  247 (451)
                      ... +.     +-....-+++.||+..|.|..+.   ...+.++|.....   ...  .    ...|++++++++.++..
T Consensus        81 ~~~-Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~---v~~--~----~~~d~~~le~ai~~~t~  150 (363)
T TIGR01437        81 ITR-GNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVE---AGY--A----NECSAEQLEAAITEKTA  150 (363)
T ss_pred             hcC-CCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEE---EcC--C----CCCCHHHHHHhcChhce
Confidence            521 00     00000002348888887775442   1122222211100   000  0    11389999999976443


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCccccc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGA  325 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~  325 (451)
                      ++++++...+..|...+    +++|.++|++||+++|+|++|. .  ...  ....+|  .|++++|  |.++ |++.|+
T Consensus       151 ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~~~--~~~~~g--~D~~~~S~~K~l~-gp~~G~  218 (363)
T TIGR01437       151 AILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--DLQ--KYYRLG--ADLVIYSGAKAIE-GPTSGL  218 (363)
T ss_pred             EEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--chH--HHHHcC--CCEEEEeCCcccC-CCceEE
Confidence            34435543444555556    8899999999999999999996 2  111  111223  5777654  8885 456899


Q ss_pred             ccccHHHHhhccCCCcc--CCCCCcHHHHHHHHHHHHHhcC--hHHHH----H------HHhCCCCcceec---ccce--
Q 013008          326 ALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISN--PAFLA----S------KLARNPHVKDVR---GLGL--  386 (451)
Q Consensus       326 v~~~~~i~~~~~~~~~~--~t~~~~~~~~aaa~aal~~~~~--~~~~~----~------~~~~~~~~~~v~---g~G~--  386 (451)
                      +++++++++.+....++  ..+......+++..++++.+.+  .+..+    +      .++++|.+....   ..+.  
T Consensus       219 l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~  298 (363)
T TIGR01437       219 VLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDI  298 (363)
T ss_pred             EEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcC
Confidence            88888887765432111  1111111223344445544322  11111    1      334444433221   1111  


Q ss_pred             -eEEEEec-----CChHHHHHHHHHCC--ceeeec-CCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          387 -IIGIEFD-----VSATPVVDACRDSG--LLVLTA-GKGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       387 -~~~~~~~-----~~~~~~~~~l~~~G--v~~~~~-~~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                       ...+.++     ....++.+.|.++|  |..++- ...+.+++.+.. .+++|++.++++|++.
T Consensus       299 ~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~  362 (363)
T TIGR01437       299 ARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERIREI  362 (363)
T ss_pred             ceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence             1122232     35688999998877  555531 123578888774 6799999999999875

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.3e-16  Score=158.84  Aligned_cols=314  Identities=19%  Similarity=0.201  Sum_probs=210.9

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CC------CCHHHHHHHHHHhhccC---CCeEEecCCHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MY------YSIPQIELAKRLVACSF---ADRVFFSNTGTEA  167 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~------~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA  167 (451)
                      --|+|...+      +..+..|.+++.+....+..... ..      .+...++..+.++++++   .+.|+||++.|+|
T Consensus        23 ~vylD~aa~------~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a   96 (405)
T COG0520          23 LVYLDNAAT------SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA   96 (405)
T ss_pred             eEEecCccc------ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence            457886553      34788899999998765322211 11      12235677777888876   3779999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhc
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLI  242 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l  242 (451)
                      +...........        .++|.||+.+--+|....--..+.....         ..+.++|.+     |++++++.+
T Consensus        97 ln~va~~l~~~~--------~~gdeIv~s~~EH~sn~~pw~~~~~~~G---------a~v~~i~~~~~g~~~~~~~~~~i  159 (405)
T COG0520          97 LNLVARGLGRSL--------KPGDEIVVSDLEHHSNIVPWQELAKRTG---------AKVRVIPLDDDGLLDLDALEKLI  159 (405)
T ss_pred             HHHHHHHhhhhh--------cCCCEEEEccCcchhhHHHHHHHHHhcC---------cEEEEEecCCCCCcCHHHHHHhc
Confidence            999888653211        1578899888777766544333331111         123333322     688999977


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCC
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGG  320 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G  320 (451)
                      .+ ++++|.+.-+.+..|.+.|    +++|.++|+++|+++++|-+|+ .+..    ..+-..+..|+..||  |.+.|.
T Consensus       160 ~~-~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h~----~idv~~l~~Df~afsgHKwl~gP  229 (405)
T COG0520         160 TP-KTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AGHL----PIDVQELGCDFLAFSGHKWLLGP  229 (405)
T ss_pred             CC-CceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cCcc----CCCchhcCCCEEEEcccccccCC
Confidence            54 7899999999999999988    9999999999999999999985 3211    222334568999888  877654


Q ss_pred             cccccccccHHHHhhccCCCc------------cCCCC----------CcHHHHHHHHHHHHHhcChH---HHHH-----
Q 013008          321 LPIGAALVTEKVASAINYGDH------------GSTFA----------GSPLVCNAAIAVLDKISNPA---FLAS-----  370 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~------------~~t~~----------~~~~~~aaa~aal~~~~~~~---~~~~-----  370 (451)
                      -.+|.+.+++++.+.+.|...            ..++.          .|.....+..++++.+++.+   ..++     
T Consensus       230 ~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~  309 (405)
T COG0520         230 TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELT  309 (405)
T ss_pred             CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            578999999999988754310            11111          12333444446666554422   2111     


Q ss_pred             -----HHhCCCCcceec----ccceeEEEEec-CChHHHHHHHHHCCceeeecCC-----------CCEEEEeCCCCCCH
Q 013008          371 -----KLARNPHVKDVR----GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK-----------GNVVRLVPPLIISE  429 (451)
Q Consensus       371 -----~~~~~~~~~~v~----g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~-----------~~~iri~~~~~~t~  429 (451)
                           .++.+|.+....    ..+.++.|.++ ....++...|.++||.++.+..           ...+|+++.+-.|+
T Consensus       310 ~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~  389 (405)
T COG0520         310 EYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTE  389 (405)
T ss_pred             HHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCH
Confidence                 334556443222    24667777774 5688999999999988876532           12399999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013008          430 QELDQAVEILCKTLP  444 (451)
Q Consensus       430 e~i~~~l~~l~~~l~  444 (451)
                      ||||++++.|+++.+
T Consensus       390 edid~l~~aL~~~~~  404 (405)
T COG0520         390 EDVDRLLEALKKALA  404 (405)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998764

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.79  E-value=6.6e-18  Score=153.31  Aligned_cols=315  Identities=16%  Similarity=0.185  Sum_probs=201.1

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK  177 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~  177 (451)
                      ..+|+-|-.-+.    .-.++++||.++.-.    ... +.++...+|+++.++.+|+|..+|++||+..|..+++.-+.
T Consensus        22 ~~vDLRSDTvT~----PTdeMr~am~eA~vg----DdVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~   93 (384)
T KOG1368|consen   22 RSVDLRSDTVTV----PTDEMRRAMAEASVG----DDVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCH   93 (384)
T ss_pred             eccccccccccC----ChHHHHHHHhhcccC----cccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhc
Confidence            456766654322    335667776665321    112 23444789999999999999999999999999999997653


Q ss_pred             HhhhcCCCCCCCCceEEEEcCC-ccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC-------CeEE
Q 013008          178 FQRHSNPDSKEPATEFVSFTNS-FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-------KTAA  249 (451)
Q Consensus       178 ~~~~~~~~~~~~~~~ii~~~~~-yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-------~~aa  249 (451)
                      -          ++..||+-+.+ -|-|..+..+.-+....+ ...+ .++...    |++++|+.+..+       .+..
T Consensus        94 ~----------rg~eii~gd~~HI~~~E~gg~s~l~gv~~~-tv~~-e~dgtm----~ledIe~~ir~~~GD~H~p~T~L  157 (384)
T KOG1368|consen   94 Q----------RGSEIIVGDRAHIHRYEQGGISQLAGVHVR-TVKN-ENDGTM----DLEDIEAAIRVPKGDCHMPPTKL  157 (384)
T ss_pred             C----------CCceEEeccchheeehhccChhhhccceeE-eeee-CCCCee----eHHHHHHhhcCCCCCccCCCceE
Confidence            1          45566654432 233433333321111000 0001 011111    799999999721       3689


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc-ccccccccccCCCcce--eeecccccCCcccccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR-TGYLWAHEHYGIFPDI--MTLAKPLAGGLPIGAA  326 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr-~G~~~~~~~~~~~pdi--~t~sK~lg~G~~iG~v  326 (451)
                      |++|..+++.|..+.|.+|+.++.+||++||+.|.+|-+-- |.. ...+.....+.-..|-  +||||+||+  |+|-|
T Consensus       158 IclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavasgV~vk~i~~~fDSVsiCLSKglgA--PVGSV  234 (384)
T KOG1368|consen  158 ICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVASGVPVKKICSAFDSVSICLSKGLGA--PVGSV  234 (384)
T ss_pred             EEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHcCCCHHHHHHhhhhhhhhhhccCCC--CcccE
Confidence            99999888777778899999999999999999999997632 100 0001111122222343  489999965  77765


Q ss_pred             -cccHHHHhhccC--CCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------HHh---CCCCc-ceec-ccceeEEEE
Q 013008          327 -LVTEKVASAINY--GDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------KLA---RNPHV-KDVR-GLGLIIGIE  391 (451)
Q Consensus       327 -~~~~~i~~~~~~--~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~~~---~~~~~-~~v~-g~G~~~~~~  391 (451)
                       ++++++++..+.  ...++.+-.+.+.++|++.+|+.  ....++.       +++   ..+.+ ..+. .+..+..+.
T Consensus       235 iVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~  312 (384)
T KOG1368|consen  235 IVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMV  312 (384)
T ss_pred             EEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhccccceeeecchhhcceeeee
Confidence             578888876532  23455566677888999988873  2111111       222   22211 1222 345566655


Q ss_pred             e---cCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          392 F---DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       392 ~---~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +   ...+..+++.+.++|+++.++.. ..+|+.+...+|+++++.++..+.+.+
T Consensus       313 l~q~~~~~~~l~~~~~k~gi~lm~~~s-~r~Rivlh~Qvt~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  313 LCQARLTAEELCKFLEKNGILLMGGAS-RRIRIVLHHQVTDEDVEYVKSVLSKKF  366 (384)
T ss_pred             cccccCCHHHHHHHHHHCCeEEeeccc-cceEEEEEEecCHHHHHHHHHHHHHHH
Confidence            5   24578899999999999988755 668999999999999999999996554

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.78  E-value=1.7e-17  Score=156.31  Aligned_cols=309  Identities=19%  Similarity=0.248  Sum_probs=190.3

Q ss_pred             EeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhh
Q 013008          101 LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR  180 (451)
Q Consensus       101 iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~  180 (451)
                      +||.|.+++   | .+|++++++.++-..  ....++.++...++++++++.++.+.++|++|||+||..+|.....   
T Consensus         2 ~~f~SDn~~---g-~~~~m~eam~~a~~~--~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~---   72 (342)
T COG2008           2 IDFRSDNVA---G-PTPEMREALAAANAV--GDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQ---   72 (342)
T ss_pred             CccccCccC---C-CCHHHHHHHHhcccc--CCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcC---
Confidence            577776652   3 789999999876432  1122344556889999999999999999999999999999996662   


Q ss_pred             hcCCCCCCCCceEEEEcCCccCChhhh--hhc-c-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC-----CeEEEE
Q 013008          181 HSNPDSKEPATEFVSFTNSFHGRTMGA--LAL-T-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KTAAVF  251 (451)
Q Consensus       181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~aavi  251 (451)
                              ++..||+ ...-|-++...  ... + +.+.      +..++..  -.-++++++..+.++     .+..++
T Consensus        73 --------~~~~vi~-~~~aHi~~~E~Ga~~~~~~~~~~------~~~~g~~--Gklt~e~v~~~i~~~d~~~~~~~~~~  135 (342)
T COG2008          73 --------PGESVIC-HETAHIYTDECGAPEFFGGGQKL------PIVPGAD--GKLTPEDVEAAIRPDDIHHAPTPLAV  135 (342)
T ss_pred             --------CCCeEEE-eccccceecccCcHHHHcCCcee------ccCCCCC--CCcCHHHHHHhhcCCCcccCCCceEE
Confidence                    4554544 44556444221  111 1 1110      1111100  001789999987622     345566


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC--CCcccccccccccCCCcceeeecccccCCccccccc-c
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAAL-V  328 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~-~  328 (451)
                      +|....++|. ++|.++|++|.++|++||+.|..|-+--.  .-..|  -....+.-..|+++|+-+-++|+|+|+|+ +
T Consensus       136 ~e~~~te~Gt-Vy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~g  212 (342)
T COG2008         136 LENTATEGGT-VYPLDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFCLTKGGGAPVGAIVFG  212 (342)
T ss_pred             EeeccCCCce-ecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEecccCCcceeeeEEEc
Confidence            6655557665 68999999999999999999999976311  10111  12222333567777665555577888876 6


Q ss_pred             cHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhC---CCCccee-cccceeEEEEe
Q 013008          329 TEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLAR---NPHVKDV-RGLGLIIGIEF  392 (451)
Q Consensus       329 ~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~---~~~~~~v-~g~G~~~~~~~  392 (451)
                      ++++++.++..  ..++-++-..+..++++..|+.   .-|+..          +.+.   .|++.-. +....++.+.+
T Consensus       213 n~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~---~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l  289 (342)
T COG2008         213 NRDFAKRARRWRKRAGGLMRKARFLAAQGLYALED---DVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRL  289 (342)
T ss_pred             CHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEEC
Confidence            88888776432  3455555556666677776662   212211          3332   2233222 24566666666


Q ss_pred             cC---ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          393 DV---SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       393 ~~---~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.   ........+...|++..+.+  ..+||..+..+++|+|+++++.+++++
T Consensus       290 ~~~~i~~l~~~~~~~~~~~~~~~~~--~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         290 PESAIEALRLAGALFYRGVLIGAHG--EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             ChHHHHHHHhhchhheeeeeccCCC--ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            32   12223334445566655443  469999999999999999999888754

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.78  E-value=1.7e-17  Score=165.94  Aligned_cols=281  Identities=16%  Similarity=0.164  Sum_probs=181.2

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .+..+.++...+|+++|+++.+.+.+++++||++|+..++..+..           ++|+||+.++.|++......... 
T Consensus        57 ~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~-----------~GD~Vi~~~~~y~~~~~~~~~~~-  124 (398)
T PRK08249         57 IYSRNTNPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLK-----------PGDRVVSIKDTYGGTNKIFTEFL-  124 (398)
T ss_pred             cccCCCChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-----------CCCEEEEcCCchHHHHHHHHHHH-
Confidence            345566777899999999999988899999999999999886541           68999999999976432111100 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                              ......+.+++..|++++++++++ ++++|++|.++++.|.+.+    +++|.++|++||+++|+|++|..+
T Consensus       125 --------~~~Gi~v~~vd~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~  191 (398)
T PRK08249        125 --------PRMGVDVTLCETGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP  191 (398)
T ss_pred             --------hhCCeEEEEcCCCCHHHHHHhcCC-CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc
Confidence                    001122344555689999999975 5788888877777787776    999999999999999999999643


Q ss_pred             CcccccccccccCCCccee--eecccccC-Cccc-ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH
Q 013008          293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA  366 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~  366 (451)
                       .....     .....|++  +++|.++| |..+ |++++++++++.+...........+|+.++.++..++.+..  +.
T Consensus       192 -~~~~~-----l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~~R~~~  265 (398)
T PRK08249        192 -INQNP-----LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLKLRVRQ  265 (398)
T ss_pred             -ccCCc-----hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHHHHHHH
Confidence             11111     12235555  67899986 5444 77778888888775433334455678887777776665421  11


Q ss_pred             H------HHHHHhCCCCcce------------------ecccceeEEEEecCC---hHHHHHHHH--HCCce-------e
Q 013008          367 F------LASKLARNPHVKD------------------VRGLGLIIGIEFDVS---ATPVVDACR--DSGLL-------V  410 (451)
Q Consensus       367 ~------~~~~~~~~~~~~~------------------v~g~G~~~~~~~~~~---~~~~~~~l~--~~Gv~-------~  410 (451)
                      .      +.+.++.+|.+..                  ..|.|.++.|+++..   ..+|.+.|.  ..++-       +
T Consensus       266 ~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~  345 (398)
T PRK08249        266 QQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIY  345 (398)
T ss_pred             HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCCCCCcee
Confidence            1      1113445553332                  235688889988532   223333321  11211       1


Q ss_pred             e-ec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          411 L-TA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       411 ~-~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      . |.               | .++.+|+++.+    |+.+.+++.|+++|+.+++
T Consensus       346 ~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~~~  396 (398)
T PRK08249        346 GPARTTSHVENTLEERAALGIPEGLVRISVGI----EDTEDLIADLEQAFAHLES  396 (398)
T ss_pred             eCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHHhhh
Confidence            1 11               0 12568886554    5677788888888876553

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.78  E-value=2e-17  Score=164.30  Aligned_cols=277  Identities=15%  Similarity=0.160  Sum_probs=177.2

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .+..+.++...+|+++|+++.+.+..++++||++|+..++.++.            ++++||+.++.|++......... 
T Consensus        45 ~y~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~~ll~------------~Gd~Vl~~~~~y~~t~~~~~~~~-  111 (366)
T PRK08247         45 DYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVMSLFR------------SGDELIVSSDLYGGTYRLFEEHW-  111 (366)
T ss_pred             cccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHhC------------CCCEEEEecCCcCcHHHHHHHHh-
Confidence            34566777799999999999998778999999999987764322            58999999999987532221110 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-C
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G  291 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g  291 (451)
                              ......+.+++..|++++++++++ ++++|++|.++++.|    +...+++|.++|++||+++|+||+|. +
T Consensus       112 --------~~~G~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~----~~~dl~~I~~la~~~g~~lIvD~t~~~~  178 (366)
T PRK08247        112 --------KKWNVRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLM----QETDIAAIAKIAKKHGLLLIVDNTFYTP  178 (366)
T ss_pred             --------hccCceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCC----cHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence                    011234556666799999999975 577888876665544    34459999999999999999999983 2


Q ss_pred             CCcccccccccccCCCcceeeecccccC--Cccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH
Q 013008          292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG--GLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA  366 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~t~sK~lg~--G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~  366 (451)
                      +  .....   ..+...-+.+++|.++|  ++..|+++++ +++++.+.......+...+|+.+..+...|+.+..  +.
T Consensus       179 ~--~~~p~---~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~~r~~~  253 (366)
T PRK08247        179 V--LQRPL---EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLALRMRQ  253 (366)
T ss_pred             c--ccCch---hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHHHHHHH
Confidence            2  11111   12322233478899986  3788998886 67777664333333445677777777666543211  11


Q ss_pred             ------HHHHHHhCCCCcce--ecccceeEEEEecCChHHHHHHHHH--------------CCceeeecC----------
Q 013008          367 ------FLASKLARNPHVKD--VRGLGLIIGIEFDVSATPVVDACRD--------------SGLLVLTAG----------  414 (451)
Q Consensus       367 ------~~~~~~~~~~~~~~--v~g~G~~~~~~~~~~~~~~~~~l~~--------------~Gv~~~~~~----------  414 (451)
                            .+.+.++.+|.+..  .++.|.++.|+++.  .+...++++              +.+++.|..          
T Consensus       254 ~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~~--~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~  331 (366)
T PRK08247        254 HEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQD--EEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEI  331 (366)
T ss_pred             HHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEECC--HHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHH
Confidence                  11115566776654  44578888888742  222222222              123333321          


Q ss_pred             ------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          415 ------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       415 ------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                            ..+.+|++..+    |+++.+++.|+++|+++
T Consensus       332 r~~~gi~~~~~R~svGl----E~~~dl~~dl~~al~~~  365 (366)
T PRK08247        332 RIANGVCNRLLRFSVGI----ENVEDLIADLKQAFKQV  365 (366)
T ss_pred             HHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhhc
Confidence                  02467886554    56777888888887653

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.78  E-value=1.2e-16  Score=159.99  Aligned_cols=313  Identities=17%  Similarity=0.123  Sum_probs=186.6

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC---CCCHHHHHHHHHHhhc---cC---CCeEEecCCHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM---YYSIPQIELAKRLVAC---SF---ADRVFFSNTGTEANEA  170 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~~---~~---~e~v~~~~sG~eA~~~  170 (451)
                      |+|..+..      ..++.|.+++.+.++.....+..   +.......+.+.+++.   ++   .++|+|++|++||+..
T Consensus         2 yld~aa~~------~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~   75 (382)
T TIGR03403         2 YLDNNATT------MLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW   75 (382)
T ss_pred             cccCcCCC------CCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence            56655543      36789999999988753221111   1112233444444333   32   5789999999999999


Q ss_pred             HHHHHHH-Hh-hhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcC
Q 013008          171 AIKFARK-FQ-RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQ  243 (451)
Q Consensus       171 al~~a~~-~~-~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~  243 (451)
                      +++.+.. .. .       +++++|++....|+........+..          ....+..+|.+     |+++|++.+.
T Consensus        76 ~~~~~~~~~~~~-------~~~~~vi~~~~e~ps~~~~~~~~~~----------~G~~v~~v~~~~~g~~d~~~l~~~i~  138 (382)
T TIGR03403        76 VLKGVYFDEILK-------GGKNHIITTEVEHPAVRATCAFLES----------LGVEVTYLPINEQGTITAEQVREAIT  138 (382)
T ss_pred             HHHHHHHhhccc-------CCCCEEEEcCCccHHHHHHHHHHHH----------CCCEEEEEecCCCCCCCHHHHHHhcc
Confidence            9986531 00 1       1245677776544333221111100          00112222221     7899999986


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCc
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGL  321 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~  321 (451)
                      + ++++|++..+++++|.+.+    +++|.++|++||+++|+|+++. +|..  .  .+.....+|++++|  |.+|. .
T Consensus       139 ~-~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~--~~~~~~~~D~~~~s~~K~~gp-~  207 (382)
T TIGR03403       139 E-KTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--P--VDVQKAGVDFLSFSAHKFHGP-K  207 (382)
T ss_pred             c-CCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--c--cCccccCCCEEEEcchhhCCC-C
Confidence            5 4577777777778888777    8899999999999999999985 4321  1  12223357888777  96542 2


Q ss_pred             ccccccccHHHHhhccCCC-------ccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH-------H---HhCCCCcceec
Q 013008          322 PIGAALVTEKVASAINYGD-------HGSTFAGSPLVCNAAIAVLDKISN--PAFLAS-------K---LARNPHVKDVR  382 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~~-------~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~-------~---~~~~~~~~~v~  382 (451)
                      .+|++..+++..  +.+..       .....+.|.+++.++.++++.+.+  +...++       +   ++.++.+..+.
T Consensus       208 G~g~l~vr~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~  285 (382)
T TIGR03403       208 GVGGLYIRKGVE--LTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVG  285 (382)
T ss_pred             ceEEEEECCCCC--CCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence            256666554421  11110       011234566777677777765432  111111       2   23345443332


Q ss_pred             cc----ceeEEEEec-CChHHHHHHHHHCCceeeecC-----------------C-----CCEEEEeCCCCCCHHHHHHH
Q 013008          383 GL----GLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------------K-----GNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       383 g~----G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------------~-----~~~iri~~~~~~t~e~i~~~  435 (451)
                      +.    ..++.+.++ .....+...|.++||.+..+.                 .     +..+|+++....|++|||++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~  365 (382)
T TIGR03403       286 DREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYT  365 (382)
T ss_pred             CCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHH
Confidence            21    334455553 356778888889999998421                 0     24699999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 013008          436 VEILCKTLPVLDS  448 (451)
Q Consensus       436 l~~l~~~l~~~~~  448 (451)
                      ++.|++++++++.
T Consensus       366 ~~~l~~~~~~~~~  378 (382)
T TIGR03403       366 IEVFKKAVQRLRA  378 (382)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.78  E-value=2.2e-16  Score=159.12  Aligned_cols=314  Identities=16%  Similarity=0.145  Sum_probs=189.2

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CC------CHHHHHHHHHHhhccC--CCeEEecCCHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YY------SIPQIELAKRLVACSF--ADRVFFSNTGTEAN  168 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~------~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~  168 (451)
                      +-|+|..+.      +..++.+.+++.+.+......... .+      .....++.+.+++.++  .+.|+|++|+++|+
T Consensus         4 ~~yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~   77 (402)
T TIGR02006         4 PIYLDYAAT------TPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN   77 (402)
T ss_pred             cEEeeCCcC------CCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence            468887653      346899999998887543111111 11      1225567788888887  56899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcC
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQ  243 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~  243 (451)
                      ..+++.+..+..       .++++||+..+.| ..............         ..+..++.     .|++++++++.
T Consensus        78 ~~~l~~l~~~~~-------~~g~~Vi~~~~~h-~s~~~~~~~~~~~g---------~~v~~v~~~~~~~~d~~~l~~~l~  140 (402)
T TIGR02006        78 NLAIKGIAHFYK-------SKGNHIITSKTEH-KAVLDTCRYLEREG---------FEVTYLPPKSNGLIDLEELKAAIR  140 (402)
T ss_pred             HHHHHHHHHhhc-------CCCCEEEECCCcc-HHHHHHHHHHHhcC---------CEEEEEccCCCCcCCHHHHHHhcC
Confidence            999887653211       1467777776654 43332221100000         11222221     27899999986


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCc
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGL  321 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~  321 (451)
                      + ++++|++..+++++|.+.+    +++|.++|++||+++|+|++|+ +|..    ..+..+..+|++++|  |.+| ..
T Consensus       141 ~-~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~----~~~~~~~~~D~~~~s~~K~~g-p~  209 (402)
T TIGR02006       141 D-DTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI----PINVNELKVDLMSISGHKIYG-PK  209 (402)
T ss_pred             C-CCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc----ccCccccCCCEEEEehhhhcC-CC
Confidence            5 5778888888888888877    9999999999999999999995 4322    122234568999988  9664 23


Q ss_pred             ccccccccHHHHhhccCCCcc-------CCCCCcHHHHHHHHHHHHHhcCh--HHHHH-------HH---hCCCCccee-
Q 013008          322 PIGAALVTEKVASAINYGDHG-------STFAGSPLVCNAAIAVLDKISNP--AFLAS-------KL---ARNPHVKDV-  381 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~~~~-------~t~~~~~~~~aaa~aal~~~~~~--~~~~~-------~~---~~~~~~~~v-  381 (451)
                      .+|+++.+++....+.+...+       ...+.+...+.+..++++.+...  ...++       +.   +.++.+... 
T Consensus       210 G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~  289 (402)
T TIGR02006       210 GIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNG  289 (402)
T ss_pred             ceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence            588888776544444332111       11123455555665777765421  11111       22   234433211 


Q ss_pred             --ccc-ceeEEEEec-CChHHHHHHHHHCCceeeecC----------------------CCCEEEEeCCCCCCHHHHHHH
Q 013008          382 --RGL-GLIIGIEFD-VSATPVVDACRDSGLLVLTAG----------------------KGNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       382 --~g~-G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~----------------------~~~~iri~~~~~~t~e~i~~~  435 (451)
                        ... ...+.+.|. .....+...+  +++.+..+.                      ..+.+|+++....|+||+|++
T Consensus       290 ~~~~~~p~~~~v~f~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l  367 (402)
T TIGR02006       290 DLEHRVPGNLNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYA  367 (402)
T ss_pred             CccccCCCeEEEEEeCcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHH
Confidence              001 011123332 3344554444  354433210                      025789999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 013008          436 VEILCKTLPVLD  447 (451)
Q Consensus       436 l~~l~~~l~~~~  447 (451)
                      ++.|+++++.++
T Consensus       368 ~~~l~~~~~~~~  379 (402)
T TIGR02006       368 VKLVKSAIDKLR  379 (402)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.77  E-value=8.7e-17  Score=161.25  Aligned_cols=322  Identities=13%  Similarity=0.104  Sum_probs=188.2

Q ss_pred             cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHH
Q 013008           95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~  174 (451)
                      ..|.-||||.+-.++       ..+.+++.+++.....  .+.......+|++.++++++.+.+++++||++|+..++++
T Consensus        17 ~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~--~Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~a   87 (431)
T cd00617          17 RSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDE--AYAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSI   87 (431)
T ss_pred             CCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCC--ccCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHH
Confidence            356788999886553       3444555555544322  1223444779999999999999999999999999999986


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCe---eEeeC---CCHHHHHHhcCCC---
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV---NFVEY---GNIEATRKLIQPG---  245 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~d~~~le~~l~~~---  245 (451)
                      +.           +++|.| ..++.|..+.......++.+...    +..+..   ...|+   -|++.|++++.+.   
T Consensus        88 l~-----------~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v----~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~  151 (431)
T cd00617          88 LL-----------KPGRTV-PSNMHFDTTRGHIEANGAVPVDL----VIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAE  151 (431)
T ss_pred             hC-----------CCCCEE-ccCCcccchHHHHHhCCCEeEEE----ecccccccccccCCCCCcCHHHHHHHhCcccCC
Confidence            64           257765 57777765543333333332211    111110   00111   2899999999743   


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC----------CcccccccccccCCCcceeeecc
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL----------GRTGYLWAHEHYGIFPDIMTLAK  315 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~----------gr~G~~~~~~~~~~~pdi~t~sK  315 (451)
                      ++++|+++..++..|+.+.+.+.+++|+++|++||++||.|+++.-.          |+.+....    .+...+.++||
T Consensus       152 ~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~----ei~~e~~s~sd  227 (431)
T cd00617         152 NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIA----EIAREMFSYAD  227 (431)
T ss_pred             CccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHH----HHHHHhhccCC
Confidence            36777776444443335789999999999999999999999996411          11111100    11111223444


Q ss_pred             cccC-C-----cc-cccccccH-HHHhhccCC----CccCCCCC-cHHHHHHHHHHHHHhcChHHHHH----------HH
Q 013008          316 PLAG-G-----LP-IGAALVTE-KVASAINYG----DHGSTFAG-SPLVCNAAIAVLDKISNPAFLAS----------KL  372 (451)
Q Consensus       316 ~lg~-G-----~~-iG~v~~~~-~i~~~~~~~----~~~~t~~~-~~~~~aaa~aal~~~~~~~~~~~----------~~  372 (451)
                      ++.. |     .+ .|++++++ ++++.++..    ....++++ ++--++|...+|+...+.+++++          .+
T Consensus       228 ~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L  307 (431)
T cd00617         228 GCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRL  307 (431)
T ss_pred             EEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            3321 2     23 45788875 688877531    11123333 23333333225543222232222          22


Q ss_pred             h--CCCCcceecccceeEEEEec----------CChHHHHHHHH-HCCceeeec-----------C-----CCCEEEEeC
Q 013008          373 A--RNPHVKDVRGLGLIIGIEFD----------VSATPVVDACR-DSGLLVLTA-----------G-----KGNVVRLVP  423 (451)
Q Consensus       373 ~--~~~~~~~v~g~G~~~~~~~~----------~~~~~~~~~l~-~~Gv~~~~~-----------~-----~~~~iri~~  423 (451)
                      +  .+|.+  .+..|.+++++..          .++..|+.+|+ +.||.+...           +     ..+.+|+.+
T Consensus       308 ~~~G~~v~--~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~  385 (431)
T cd00617         308 DEAGVPIV--EPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAI  385 (431)
T ss_pred             HHCCCCcc--CCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEec
Confidence            2  23322  2344566677653          13677887776 457775421           1     025689987


Q ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHh
Q 013008          424 PL-IISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       424 ~~-~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      |- ..|.+++|.++++|.++.++-.
T Consensus       386 prr~~t~~~~~~~~~~~~~~~~~~~  410 (431)
T cd00617         386 PRRVYTQDHMDYVAAAVIALYERRE  410 (431)
T ss_pred             cccccCHHHHHHHHHHHHHHHhhHh
Confidence            75 7799999999999999887643

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.77  E-value=8.3e-17  Score=162.29  Aligned_cols=316  Identities=18%  Similarity=0.173  Sum_probs=179.0

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHH-hhcccc---cCCC-CCHHH---HH-HHHHHhhccCCCe-EEecCCHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQA-NVLTHV---SNMY-YSIPQ---IE-LAKRLVACSFADR-VFFSNTGTEA  167 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~-~~~~~~---~~~~-~~~~~---~~-l~~~l~~~~~~e~-v~~~~sG~eA  167 (451)
                      +++|.+..+..     .-+|.|++++.+.+ .++..+   +..+ ..+..   ++ .++.++++++.+. .++.+||++|
T Consensus        19 ~~~~~~~~~~~-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a   93 (402)
T cd00378          19 RETLELIASEN-----FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQA   93 (402)
T ss_pred             HhCeeeeccCC-----cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHH
Confidence            45677766544     24899999998765 333211   1111 22222   23 2334567777443 2444578999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhh----hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA----LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ  243 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  243 (451)
                      +..+++.+.           .++|+|++.++.|.+.....    ....+....   ..+...+.. -..-|++++++.+.
T Consensus        94 ~~~~l~~l~-----------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~-~~~id~~~l~~~i~  158 (402)
T cd00378          94 NLAVYFALL-----------EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFE---SVPYGVDPE-TGLIDYDALEKMAL  158 (402)
T ss_pred             HHHHHHHhc-----------CCCCEEEEecCccCccccccccccccccceeEE---EecCCcCcc-cCCcCHHHHHHHHH
Confidence            999998764           16899999999987653221    111111000   001100000 00028999999986


Q ss_pred             CCCeEEEEE-ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCccee--eecccccC
Q 013008          244 PGKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG  319 (451)
Q Consensus       244 ~~~~aavi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~  319 (451)
                      ..++++|++ .|.++   ...+    +++|.++|++||+++|+||+| .|+...|...  .... ..|++  +++|++ +
T Consensus       159 ~~~~~~v~~~~~~~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~--~~~~-~~dv~~~s~sK~l-~  227 (402)
T cd00378         159 EFKPKLIVAGASAYP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP--NPLP-GADVVTTTTHKTL-R  227 (402)
T ss_pred             hCCCCEEEecCcccC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC--Cccc-CCcEEEeccccCC-C
Confidence            334555554 55433   2334    899999999999999999996 4442223211  1111 24654  678999 5


Q ss_pred             CcccccccccH-HHHhhccCCCccCCCCCc-HHHHHHHHHHHHHhcC---hHHHHH----------HHhCCCCccee--c
Q 013008          320 GLPIGAALVTE-KVASAINYGDHGSTFAGS-PLVCNAAIAVLDKISN---PAFLAS----------KLARNPHVKDV--R  382 (451)
Q Consensus       320 G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~-~~~~aaa~aal~~~~~---~~~~~~----------~~~~~~~~~~v--~  382 (451)
                      |+++|++++++ ++++.+......+.++.+ +...+++..++..+..   +++.++          .++.++ +..+  .
T Consensus       228 G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~  306 (402)
T cd00378         228 GPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERG-FKVVSGG  306 (402)
T ss_pred             CCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCC-CeEeecC
Confidence            68899999876 888877533222223322 2233332333332222   122222          222332 2212  1


Q ss_pred             ccceeEEEEec---CChHHHHHHHHHCCceeeec----C-----CCCEEEEeCCC----CCCHHHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFD---VSATPVVDACRDSGLLVLTA----G-----KGNVVRLVPPL----IISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       383 g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~----~-----~~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..+.++|+.+.   .....+.+.|.++||.+.+.    .     ....+|++++.    .++++|++++++.|.+++++
T Consensus       307 ~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         307 TDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             CCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            34677778774   23456777777889999632    1     12468987765    35799999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>TIGR01814 kynureninase kynureninase

Probab=99.77  E-value=1.3e-16  Score=160.99  Aligned_cols=311  Identities=20%  Similarity=0.165  Sum_probs=184.1

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CC------CCHHHHHHHHHHhhccC--CCeEEecCCHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MY------YSIPQIELAKRLVACSF--ADRVFFSNTGTEA  167 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~------~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA  167 (451)
                      +.-|+|..+      +|..++.+.+++.+.++.+..... ..      ......++ +++ ++++  .++|+|++|++++
T Consensus        27 ~~iyld~~a------~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~~   98 (406)
T TIGR01814        27 AVIYLDGNS------LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTIN   98 (406)
T ss_pred             CcEEecCCC------cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchHH
Confidence            456776443      444678888999887765432211 10      11112333 334 5666  6789999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh----ccCCCCcCCCCcCCCCCeeEeeC-----CCHHHH
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA----LTSKEHYRSPFEPVMPGVNFVEY-----GNIEAT  238 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l  238 (451)
                      +..+++.+... +       ++++.|++.+..| ++....+.    ..+... .       .-...++.     -|++++
T Consensus        99 l~~~~~~~~~~-~-------~~~~~i~~~~~~~-~s~~~~~~~~~~~~g~~~-~-------~~~~~~~~~~~g~~~~~~l  161 (406)
T TIGR01814        99 LHLLLASFYKP-T-------PKRYKILLEAKAF-PSDHYAIESQLQLHGLTV-E-------ESMVQIEPREEETLRLEDI  161 (406)
T ss_pred             HHHHHHHhcCC-c-------CCccEEEecCCCC-ChHHHHHHHHHHhcCCCc-c-------cceEEeccCCCCccCHHHH
Confidence            99998865210 0       0123455444554 44222221    111110 0       00011111     167888


Q ss_pred             HHhcC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ec
Q 013008          239 RKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LA  314 (451)
Q Consensus       239 e~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~s  314 (451)
                      ++.++  .+++++|+++.+++++|.+.|    +++|.++|++||+++|+|++|+ +|..  .+....++  +|+++  .-
T Consensus       162 ~~~~~~~~~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~g--vD~~~~s~h  232 (406)
T TIGR01814       162 LDTIEKNGDDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDWG--VDFACWCTY  232 (406)
T ss_pred             HHHHHhcCCCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccCC--CCEEEEcCc
Confidence            88775  357889999999999999888    9999999999999999999996 5432  12233334  56554  45


Q ss_pred             ccccCCcccccccccHHHHhhccCC---Ccc----------CC----------CCCcHHHHHHHHHHHHHhcCh---HHH
Q 013008          315 KPLAGGLPIGAALVTEKVASAINYG---DHG----------ST----------FAGSPLVCNAAIAVLDKISNP---AFL  368 (451)
Q Consensus       315 K~lg~G~~iG~v~~~~~i~~~~~~~---~~~----------~t----------~~~~~~~~aaa~aal~~~~~~---~~~  368 (451)
                      |.+.+|.. |++...++..+.+.+.   ..+          .+          .+.|..++++..++|+.+.+.   ...
T Consensus       233 K~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~  311 (406)
T TIGR01814       233 KYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALR  311 (406)
T ss_pred             cccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99876533 4444433322223221   000          00          123556777777888877443   222


Q ss_pred             HH----------HHhCC----CCccee-----cccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeC-CCCCC
Q 013008          369 AS----------KLARN----PHVKDV-----RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP-PLIIS  428 (451)
Q Consensus       369 ~~----------~~~~~----~~~~~v-----~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~-~~~~t  428 (451)
                      ++          .+++.    +.+.-+     ...+.++.+.+.....++.+.|.++||.+..... +.+|+++ ++..|
T Consensus       312 ~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~~~~~-~~iRiS~~~~~nt  390 (406)
T TIGR01814       312 KKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGDKREP-SVIRVAPVPLYNT  390 (406)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEeccCC-CeEEEechhccCC
Confidence            22          11221    212111     1234456666654577899999999998875443 6899999 58889


Q ss_pred             HHHHHHHHHHHHHHH
Q 013008          429 EQELDQAVEILCKTL  443 (451)
Q Consensus       429 ~e~i~~~l~~l~~~l  443 (451)
                      ++||++++++|++++
T Consensus       391 ~~did~l~~~l~~~~  405 (406)
T TIGR01814       391 FVDVYDAVNVLEEIL  405 (406)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998765

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.76  E-value=1.1e-16  Score=159.43  Aligned_cols=301  Identities=12%  Similarity=0.074  Sum_probs=184.6

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      ..|.+.+++.+..   .+... .+.....++.+.+++.++.    +.+++++||+++++.++..+..           ++
T Consensus        16 ~~~~~~~a~~~~~---~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~-----------~~   80 (368)
T PRK13479         16 TSRTVREAMLRDW---GSWDD-DFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP-----------RD   80 (368)
T ss_pred             CCHHHHHHhCCCC---CCCCh-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC-----------CC
Confidence            4566766665533   11111 1223477888888888872    3588999999999999987641           57


Q ss_pred             ceEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-CCeEEEEEccccCCCCccccCHHH
Q 013008          191 TEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-GKTAAVFVEPIQGEGGIYSATKEF  268 (451)
Q Consensus       191 ~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~aavi~ep~~~~~G~~~~~~~~  268 (451)
                      +++++.+++|++... ......+.....   .+...+.    ..|++++++.++. .++.+|++..+++++|...+    
T Consensus        81 ~~vlv~~~~~~~~~~~~~~~~~g~~~~~---i~~~~~~----~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~----  149 (368)
T PRK13479         81 GKVLVPDNGAYGARIAQIAEYLGIAHVV---LDTGEDE----PPDAAEVEAALAADPRITHVALVHCETTTGILNP----  149 (368)
T ss_pred             CeEEEEeCCchHHHHHHHHHHcCCcEEE---EECCCCC----CCCHHHHHHHHHhCCCCcEEEEEcccCccccccC----
Confidence            789888888877532 111111211100   1111110    1378999998863 24555555555566777777    


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhccCCCc-----
Q 013008          269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDH-----  341 (451)
Q Consensus       269 l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~-----  341 (451)
                      +++|.++|+++|+++|+|+++ .+|..  ......  ..+|++  +++|++.|..++|++++++++++.+.....     
T Consensus       150 ~~~i~~l~~~~~~~livDa~~-~~g~~--~~~~~~--~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~  224 (368)
T PRK13479        150 LDEIAAVAKRHGKRLIVDAMS-SFGAI--PIDIAE--LGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLD  224 (368)
T ss_pred             HHHHHHHHHHcCCEEEEEccc-ccCCc--cccccc--cCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeec
Confidence            899999999999999999777 46532  122222  235655  567988754457999999988877653211     


Q ss_pred             ------------cCCCCCcHHHHHHHHHHHHHhcChH----HHHH----------HHhCCCCcceec---ccceeEEEEe
Q 013008          342 ------------GSTFAGSPLVCNAAIAVLDKISNPA----FLAS----------KLARNPHVKDVR---GLGLIIGIEF  392 (451)
Q Consensus       342 ------------~~t~~~~~~~~aaa~aal~~~~~~~----~~~~----------~~~~~~~~~~v~---g~G~~~~~~~  392 (451)
                                  ...|+.+...+++..++++.+.+++    ..++          .++.++......   .......+.+
T Consensus       225 ~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~  304 (368)
T PRK13479        225 LYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHA  304 (368)
T ss_pred             HHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEEC
Confidence                        1123556666667777777653322    1111          122222110001   0112233333


Q ss_pred             c----CChHHHHHHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          393 D----VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       393 ~----~~~~~~~~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .    .+..++.+.|.++||.+.++..  .+.+|++.....++||+++++++|+++++++
T Consensus       305 ~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        305 PADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             CCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence            2    2457899999999999987632  2578997655679999999999999998765

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.76  E-value=3.9e-16  Score=158.07  Aligned_cols=317  Identities=16%  Similarity=0.129  Sum_probs=177.5

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHh-hcccccC--CC--CCHHHHHHHH----HHhhccCCCeE-EecCCHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVSN--MY--YSIPQIELAK----RLVACSFADRV-FFSNTGTEA  167 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~--~~--~~~~~~~l~~----~l~~~~~~e~v-~~~~sG~eA  167 (451)
                      +.+|++.++...     -+|+|++|+...+. .+..+..  .+  .......+++    .+++.++.+.. ++++||++|
T Consensus        25 ~~~~~l~~~~n~-----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~a   99 (416)
T PRK00011         25 EEHIELIASENF-----VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQA   99 (416)
T ss_pred             hcCeeeecccCc-----CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCchHH
Confidence            456777776552     57999999877653 2221111  11  1222334433    67788874432 344578999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh--hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  245 (451)
                      +..+++.+.   +        ++|+|++.++.|.+......  ...+. .......+..++.   ...|+++++++++..
T Consensus       100 l~~~l~~l~---~--------~gd~Vl~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~~~d~~~l~~~i~~~  164 (416)
T PRK00011        100 NAAVYFALL---K--------PGDTILGMDLAHGGHLTHGSPVNFSGK-LYNVVSYGVDEET---GLIDYDEVEKLALEH  164 (416)
T ss_pred             HHHHHHHhc---C--------CCCEEEEeccccCCccccccccccccc-eeeEeecCcCccc---CCcCHHHHHHHHHhc
Confidence            999888663   1        68999999998865432111  11110 0000001111100   013899999999643


Q ss_pred             CeEEEEEc-cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcc
Q 013008          246 KTAAVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLP  322 (451)
Q Consensus       246 ~~aavi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~  322 (451)
                      ++++|++. +++   |...+    +++|.++|++||+++|+||+|. +|..+.+......+ ..|++  +++|+++ |.+
T Consensus       165 ~~k~v~~~~~~~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~-~~di~~~S~~K~l~-g~~  234 (416)
T PRK00011        165 KPKLIIAGASAY---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP-HADVVTTTTHKTLR-GPR  234 (416)
T ss_pred             CCCEEEECCCcC---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-CCcEEEecCCcCCC-CCC
Confidence            55666663 433   33334    8999999999999999999984 22221110011112 34554  6789984 578


Q ss_pred             ccccccc-HHHHhhccCCCccCCCCCc-HHHHHHHH-HHHHHhcC--hHHHHH----------HHhCCCCcceec--ccc
Q 013008          323 IGAALVT-EKVASAINYGDHGSTFAGS-PLVCNAAI-AVLDKISN--PAFLAS----------KLARNPHVKDVR--GLG  385 (451)
Q Consensus       323 iG~v~~~-~~i~~~~~~~~~~~t~~~~-~~~~aaa~-aal~~~~~--~~~~~~----------~~~~~~~~~~v~--g~G  385 (451)
                      +|+++++ +++.+.++.....++++.. ...+++.. +.++.+++  +++.++          .++..+ +....  ...
T Consensus       235 gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~  313 (416)
T PRK00011        235 GGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERG-FRVVSGGTDN  313 (416)
T ss_pred             ceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeeeecCCCC
Confidence            8999985 6888877543222223222 22333333 33333221  122222          222222 21111  234


Q ss_pred             eeEEEEec-C--ChHHHHHHHHHCCceeeecC---------CCCEEEEeCC----CCCCHHHHHHHHHHHHHHHHH
Q 013008          386 LIIGIEFD-V--SATPVVDACRDSGLLVLTAG---------KGNVVRLVPP----LIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       386 ~~~~~~~~-~--~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~----~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .++++.++ .  ...++.+.|.++||.+....         .+..+|+...    ..++++|++++++.|++++..
T Consensus       314 ~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        314 HLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             eEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            66677663 2  45678888889999987321         0235787432    257899999999999998765

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.76  E-value=1.1e-16  Score=160.10  Aligned_cols=196  Identities=19%  Similarity=0.184  Sum_probs=134.7

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++++++++.+.+++++||++|+..++..+.           .++|.||+.++.|.+.........  
T Consensus        55 y~r~~~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~-----------~~Gd~Vi~~~~~y~~t~~~~~~~~--  121 (390)
T PRK08133         55 YSRFTNPTVTMFQERLAALEGAEACVATASGMAAILAVVMALL-----------QAGDHVVSSRSLFGSTVSLFEKIF--  121 (390)
T ss_pred             eECCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEccCcchhHHHHHHHHH--
Confidence            3445566788999999999998889999999999999988664           168899998887755432111000  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++.+|++++++++++ ++++|++|.++++.|.+.+    +++|.++|++||+++|+|+++... 
T Consensus       122 -------~~~G~~v~~vd~~d~~~l~~~i~~-~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~-  188 (390)
T PRK08133        122 -------ARFGIETTFVDLTDLDAWRAAVRP-NTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTP-  188 (390)
T ss_pred             -------HHcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCccc-
Confidence                   011234556777799999999975 6788888887777787766    999999999999999999998422 


Q ss_pred             cccccccccccCCCccee--eecccccC-Cccc-ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD  360 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~  360 (451)
                      ......   ..+  .|++  +++|.+++ |.++ |++++++++++.+...........++..+..++..++
T Consensus       189 ~~~~pl---~~g--~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~  254 (390)
T PRK08133        189 ALQQPL---KLG--ADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLE  254 (390)
T ss_pred             ccCCch---hhC--CcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccc
Confidence            111111   123  4655  57799986 6776 6677787776655422222223456666655554443

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.76  E-value=6.2e-17  Score=160.69  Aligned_cols=277  Identities=14%  Similarity=0.102  Sum_probs=175.5

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +....++....|+++|+++.+.+.+++++||++|+..++..+.           .++|+||+.++.|++.........  
T Consensus        44 Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all-----------~~GD~Vl~~~~~y~~t~~~~~~~~--  110 (377)
T TIGR01324        44 YGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFV-----------KAGDHVLMVDSAYEPTRYFCDIVL--  110 (377)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhc-----------CCCCEEEEcCCCcHHHHHHHHHHH--
Confidence            3445666788999999999998899999999999999998654           168999999999987543211100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++.++.+.+++.+++ ++++|++|.+.++.|...+    +++|.++|++||+++|+||+|+ .|
T Consensus       111 -------~~~gi~v~~~d~~~~e~l~~~i~~-~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g  177 (377)
T TIGR01324       111 -------KRMGVDITYYDPLIGEDIATLIQP-NTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AG  177 (377)
T ss_pred             -------HhcCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cc
Confidence                   001112334444455889998865 5789999988777776665    9999999999999999999995 33


Q ss_pred             cccccccccccCCCcceee--ecccccC--CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH-
Q 013008          294 RTGYLWAHEHYGIFPDIMT--LAKPLAG--GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA-  366 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t--~sK~lg~--G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~-  366 (451)
                      .....     .....|+++  ++|.++|  +.-.|+++++++.++.+...........+|..+...+..++.+.-  +. 
T Consensus       178 ~~~~p-----l~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~R~~~~  252 (377)
T TIGR01324       178 LLFKP-----LEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLGVRLKQH  252 (377)
T ss_pred             cccCc-----cccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHHHHHHHH
Confidence            32221     123467764  5799986  367788888888777664222222334467666666555553310  11 


Q ss_pred             -----HHHHHHhCCCCcce------------------ecccceeEEEEecC-C---hHHHHHHHHHCCce---------e
Q 013008          367 -----FLASKLARNPHVKD------------------VRGLGLIIGIEFDV-S---ATPVVDACRDSGLL---------V  410 (451)
Q Consensus       367 -----~~~~~~~~~~~~~~------------------v~g~G~~~~~~~~~-~---~~~~~~~l~~~Gv~---------~  410 (451)
                           .+.++++.+|.+..                  ..+.|.++.|+++. .   ..+|.+.|.-.++.         +
T Consensus       253 ~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~  332 (377)
T TIGR01324       253 QESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLA  332 (377)
T ss_pred             HHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCcccee
Confidence                 11114444553322                  23567888888852 2   23455544322221         1


Q ss_pred             e-ec------------CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          411 L-TA------------GKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       411 ~-~~------------~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      . +.            -.++.+|+++.+    |+.+.+++.|+++|+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~liR~svGl----E~~~dl~~dl~~al~~  376 (377)
T TIGR01324       333 LCNQPELGHRPNIKRNLEGPLIRVHIGL----ENVDDLKADLKAGFEA  376 (377)
T ss_pred             ecCCCCCCHHHHHhccCCCCEEEEEeCC----CCHHHHHHHHHHHHhc
Confidence            1 10            012467886554    5667777777777754

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.76  E-value=1.2e-16  Score=159.41  Aligned_cols=198  Identities=22%  Similarity=0.243  Sum_probs=137.2

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|++++++..+.+.+++++||++|+..+++.+..           ++++||+..+.| |.+.......  
T Consensus        48 y~r~~~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~-----------~Gd~Vl~~~~~~-~~t~~~~~~~--  113 (380)
T TIGR01325        48 YSRYANPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQ-----------AGDHVVASRSLF-GSTVGFISEI--  113 (380)
T ss_pred             eecCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-----------CCCEEEEecCCc-chHHHHHHHH--
Confidence            44556667899999999999988899999999999999986641           578898877655 4432221100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                            .......+.+++.+|++++++++++ ++++|++|.++++.|...+    +++|.++|+++|+++|+||+|+.+ 
T Consensus       114 ------~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-  181 (380)
T TIGR01325       114 ------LPRFGIEVSFVDPTDLNAWEAAVKP-NTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATP-  181 (380)
T ss_pred             ------HHHhCCEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-
Confidence                  0011234566777789999998865 5789999988777787766    999999999999999999998632 


Q ss_pred             cccccccccccCCCcceee--ecccccC-Cccc-ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008          294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-GLPI-GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t--~sK~lg~-G~~i-G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      .....     ....+|+++  ++|.++| |.++ |++++++++++.++..........+|..+++++..++.+
T Consensus       182 ~~~~p-----l~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl  249 (380)
T TIGR01325       182 VLQQP-----LKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETL  249 (380)
T ss_pred             ccCCc-----hhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcH
Confidence            11111     123467774  7899986 5554 778888888777653321222234566666665555443

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.76  E-value=4.3e-17  Score=162.91  Aligned_cols=277  Identities=15%  Similarity=0.132  Sum_probs=175.7

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++++++.+.+..++++||+.|+..++..+.           .++++||+.++.|.+.. ........
T Consensus        55 y~r~~~pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~-----------~~Gd~Vv~~~~~y~~~~-~~~~~~~~  122 (386)
T PRK06767         55 YSRLGNPTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFL-----------KAGDHIICSNGLYGCTY-GFLEVLEE  122 (386)
T ss_pred             ccCCCCcchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEcCCcHHHHH-HHHHHHHh
Confidence            4455666688999999999998888999999999988887554           16889999888774432 22221110


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                      .        ....+.+++..|++++++++.+ ++++|++|.++++.|.+.+    +++|.++|+++|+++|+||+|.. +
T Consensus       123 ~--------~gi~~~~~~~~d~~~l~~~i~~-~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~-~  188 (386)
T PRK06767        123 K--------FMITHSFCDMETEADIENKIRP-NTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCS-P  188 (386)
T ss_pred             h--------cCeEEEEeCCCCHHHHHHhhCc-CceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCcc-c
Confidence            0        0112334455689999999865 5778888888777887776    89999999999999999999852 2


Q ss_pred             cccccccccccCCCccee--eecccccC-Cccc-ccccccHHHHhhccCCCcc-CCCCCcHHHHHHHHHHHHHhcC--hH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTEKVASAINYGDHG-STFAGSPLVCNAAIAVLDKISN--PA  366 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~~i~~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~--~~  366 (451)
                      ..+...   ..+  .|++  +++|.++| |.++ |+++++++.++.+...... ..-..+|+.+++++..|+.+..  +.
T Consensus       189 ~~~~pl---~~g--~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl~~r~~~  263 (386)
T PRK06767        189 YLQRPL---ELG--CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLAVRMDR  263 (386)
T ss_pred             ccCCch---hcC--CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHHHHHHH
Confidence            222211   123  4655  56799986 6665 8888888876654211111 1112357766666655543211  11


Q ss_pred             HH------HHHHhCCCCccee------------cccceeEEEEecC---ChHHHHHHHHHCCceeeecC-----------
Q 013008          367 FL------ASKLARNPHVKDV------------RGLGLIIGIEFDV---SATPVVDACRDSGLLVLTAG-----------  414 (451)
Q Consensus       367 ~~------~~~~~~~~~~~~v------------~g~G~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~~-----------  414 (451)
                      ..      .+.++.+|.+..+            ++.|.++.|+++.   ...+|.+.|...++.+.-++           
T Consensus       264 ~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~  343 (386)
T PRK06767        264 HCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATM  343 (386)
T ss_pred             HHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCcc
Confidence            11      1155667755533            3567788888852   24566666654443322111           


Q ss_pred             ---------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          415 ---------------KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       415 ---------------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                                     ..+.+|+++.+    |+.+.+++-|+++|+.
T Consensus       344 ~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~~  385 (386)
T PRK06767        344 THAAIPAELRQEMGIYDNLIRLSVGL----ESWEDIVSDLEQALKK  385 (386)
T ss_pred             ccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence                           02467886554    5677778888877754

>PRK07049 methionine gamma-lyase; Validated

Probab=99.75  E-value=1.2e-16  Score=161.18  Aligned_cols=202  Identities=14%  Similarity=0.120  Sum_probs=137.9

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      ++.+.++....|+++|+++.+.+.+++++||++|+..++..+..           ++|.||+.+|.|.++......... 
T Consensus        77 y~R~~~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~-----------~Gd~Vv~~~p~Y~~~~~~~~~~l~-  144 (427)
T PRK07049         77 YSRFNHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVR-----------PGDVILHSQPLYGGTETLLAKTFR-  144 (427)
T ss_pred             ccCCCCcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhC-----------CCCEEEEcCCCcccHHHHHHHHHH-
Confidence            45566666889999999999988999999999999998886652           689999999999887543211100 


Q ss_pred             CCcCCCCcCCCCC-eeEeeCCCHHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH---hCCEEEE
Q 013008          214 EHYRSPFEPVMPG-VNFVEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD---AGALLVF  285 (451)
Q Consensus       214 ~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~---~g~llI~  285 (451)
                              ..... +.+.+..|.+++++.+.    ..++++|++|.+++++|.+ ++.+.+.+|++.|++   +++++|+
T Consensus       145 --------~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v-~d~~~l~~la~~~~~~~~~~~~vvv  215 (427)
T PRK07049        145 --------NFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSL-VDVAAVRRVADAIEARQGHRPIIAC  215 (427)
T ss_pred             --------hcCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcc-cCHHHHHHHHHHhhhcccCCCEEEE
Confidence                    00011 11222246777876664    3467889998877777765 465555555555433   7999999


Q ss_pred             eccccCCCcccccccccccCCCccee--eecccccC--CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH
Q 013008          286 DEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK  361 (451)
Q Consensus       286 DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~  361 (451)
                      ||++.++.... .  . .++  .|++  ++||.++|  |+++|++++++++++.+.........+.+|+.+.+++..|+.
T Consensus       216 Dety~~~~~~~-p--l-~~g--~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t  289 (427)
T PRK07049        216 DNTLLGPVFQK-P--L-EHG--ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLET  289 (427)
T ss_pred             ECCccccccCC-c--c-ccC--CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh
Confidence            99986542111 1  1 123  4554  78999994  799999999999888776433223344678888887776654


Q ss_pred             h
Q 013008          362 I  362 (451)
Q Consensus       362 ~  362 (451)
                      +
T Consensus       290 l  290 (427)
T PRK07049        290 L  290 (427)
T ss_pred             H
Confidence            3

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.75  E-value=2e-16  Score=158.08  Aligned_cols=199  Identities=13%  Similarity=0.044  Sum_probs=139.2

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+..+.++...+|+++++++.+.+.+++++||+.|+..++..+..           +++.||+.++.|.+.........
T Consensus        51 ~~y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~-----------~Gd~Vi~~~~~y~~t~~~~~~~~  119 (391)
T TIGR01328        51 YIYSRLGNPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILK-----------AGDHLISDECLYGCTFALLEHAL  119 (391)
T ss_pred             CceeCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC-----------CCCEEEEecCcchHHHHHHHHHH
Confidence            3455666777899999999999988899999999999998876541           68899999888754332211110


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                               ......+.+++.+|++++++.+.+ ++++|++|.++++.|.+.+    +++|.++|+++|+++|+||+|..
T Consensus       120 ---------~~~G~~~~~vd~~d~e~l~~~i~~-~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~  185 (391)
T TIGR01328       120 ---------TKFGIQVDFINMAIPEEVKAHIKD-NTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFAT  185 (391)
T ss_pred             ---------hcCCeEEEEECCCCHHHHHHhhcc-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCch
Confidence                     011233456677789999999864 5778888887777787666    99999999999999999999852


Q ss_pred             CCcccccccccccCCCccee--eecccccC-Ccc-cccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHH
Q 013008          292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLP-IGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDK  361 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~-iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~  361 (451)
                       +..+..     .+...|++  +++|.+++ |.+ .|++++++++++.++...  .......+|+.++.++..|+.
T Consensus       186 -~~~~~~-----~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t  255 (391)
T TIGR01328       186 -PMLTNP-----VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT  255 (391)
T ss_pred             -hccCCc-----hhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc
Confidence             222221     12345665  56799986 654 577888888887765321  111234567777766665543

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.75  E-value=2.8e-16  Score=156.59  Aligned_cols=230  Identities=17%  Similarity=0.180  Sum_probs=155.6

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .++.++++...+|+++|+++.+.+.+++++||++|+..++....           .++|+|++.++.|++..........
T Consensus        45 ~Y~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~-----------~~GD~Vl~~~~~y~~~~~~~~~~~~  113 (386)
T PRK08045         45 DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-----------KPGDLLVAPHDCYGGSYRLFDSLAK  113 (386)
T ss_pred             eeeCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-----------CCCCEEEEcCCCcHHHHHHHHHHHh
Confidence            34566777789999999999987889999999999999998654           2689999999999864432221110


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                      ..         ...+.+++..|++++++++++ ++++|++|.++++.|.+.+    +++|.++|+++|+++|+||+|...
T Consensus       114 ~~---------gi~v~~vd~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~  179 (386)
T PRK08045        114 RG---------CYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP  179 (386)
T ss_pred             hC---------CeEEEEeCCCCHHHHHHhccc-CCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc
Confidence            00         011223344589999999865 5778888877777787666    899999999999999999998643


Q ss_pred             CcccccccccccCCCccee--eecccccC--Ccccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h
Q 013008          293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P  365 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~  365 (451)
                      . ....     .....|++  +++|.++|  +...|++++ ++++.+.+.......+...+|+.+..++..|+.+..  +
T Consensus       180 ~-~~~p-----l~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~~R~~  253 (386)
T PRK08045        180 A-LQNP-----LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRME  253 (386)
T ss_pred             c-cCCc-----hhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHHHHHH
Confidence            1 1111     12234655  67899985  467888876 577777664332333455788888877777764321  1


Q ss_pred             HHHH------HHHhCCCCccee------------------cccceeEEEEec
Q 013008          366 AFLA------SKLARNPHVKDV------------------RGLGLIIGIEFD  393 (451)
Q Consensus       366 ~~~~------~~~~~~~~~~~v------------------~g~G~~~~~~~~  393 (451)
                      ...+      +.++.+|.+..|                  .|.|.++.|+++
T Consensus       254 ~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~  305 (386)
T PRK08045        254 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD  305 (386)
T ss_pred             HHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec
Confidence            1111      144555644332                  366888999985

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.75  E-value=1.4e-16  Score=159.84  Aligned_cols=197  Identities=14%  Similarity=0.111  Sum_probs=139.7

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..++++...+|+++|+++++.+.+++++||++|+..++....           .++++||+.++.|...........  
T Consensus        58 Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll-----------~~Gd~Vl~~~~~y~~~~~~~~~~~--  124 (400)
T PRK06234         58 YSRLGNPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSAL-----------KAGDHVVASDTLYGCTFALLNHGL--  124 (400)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHh-----------CCCCEEEEecCccchHHHHHHHHH--
Confidence            4555667788999999999998889999999999999887554           168899999987754332211100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHh--CCEEEEeccccC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCG  291 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg  291 (451)
                             ......+.+++..|++++++++.+ ++++|++|.++++.|.+.+    +++|.++|++|  |+++|+||+|..
T Consensus       125 -------~~~G~~v~~vd~~d~e~l~~~i~~-~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~  192 (400)
T PRK06234        125 -------TRYGVEVTFVDTSNLEEVRNALKA-NTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCT  192 (400)
T ss_pred             -------hhCCeEEEEECCCCHHHHHHHhcc-CCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCc
Confidence                   011133456666799999999975 5778888887777787666    99999999997  999999999863


Q ss_pred             CCcccccccccccCCCccee--eecccccC-Ccc-cccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHH
Q 013008          292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLP-IGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDK  361 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~-iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~  361 (451)
                      . ..+...     +...|++  +++|.+++ |.+ .|++++++++++.++..  ....+...+|+.++.++..|+.
T Consensus       193 ~-~~~~~l-----~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t  262 (400)
T PRK06234        193 P-YIQRPL-----QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT  262 (400)
T ss_pred             h-hcCCch-----hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc
Confidence            2 222211     2235555  67799986 665 48999999888877532  1122355678887777766653

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.75  E-value=3.6e-16  Score=156.68  Aligned_cols=198  Identities=15%  Similarity=0.107  Sum_probs=136.0

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++|+++.+.+..++++||++|+..++..+.           .++|+||+.++.|++.......... 
T Consensus        54 y~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all-----------~pGD~Vvv~~p~Y~~t~~~~~~~~~-  121 (405)
T PRK08776         54 YTRSGNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALL-----------QPGDTLVVPHDAYGGSWRLFNALAK-  121 (405)
T ss_pred             ccCCCChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHh-----------CCCCEEEEccCCchHHHHHHHHHHH-
Confidence            4556677788999999999887777888889999999888654           1689999999999764321111100 


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                              .....+..++..|++++++++++ ++++|+++..+++.|.+..    +++|.++|++||+++|+||+|....
T Consensus       122 --------~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~  188 (405)
T PRK08776        122 --------KGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPA  188 (405)
T ss_pred             --------hcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccc
Confidence                    01123445555689999999865 5677777766666776655    9999999999999999999996321


Q ss_pred             cccccccccccCCCccee--eecccccC-C-cccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      .. ..  .   ....|++  +.+|.++| | ...|++++ ++++.+.+........++.+|+.+.+++..++.+
T Consensus       189 ~~-~p--l---~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl  256 (405)
T PRK08776        189 LQ-KP--L---EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTL  256 (405)
T ss_pred             cC-Cc--c---cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcH
Confidence            11 11  1   1235666  45699975 3 66788766 5777776643222233456889888887766654

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.75  E-value=1.4e-16  Score=159.58  Aligned_cols=229  Identities=19%  Similarity=0.153  Sum_probs=154.8

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++|+++.+.+.+++++||+.|+..++..+.           .++|+||+.+..|.+.........  
T Consensus        64 Y~r~~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all-----------~~Gd~Vl~~~~~~~~t~~~~~~~~--  130 (403)
T PRK07810         64 YSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALL-----------GAGDRLVAARSLFGSCFVVCNEIL--  130 (403)
T ss_pred             eeCCCCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHh-----------CCCCEEEEccCCcchHHHHHHHHH--
Confidence            4556777789999999999998899999999999999887654           168889988766544322111110  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++.+|++++++++++ ++++|++|.+.++.|.+.+    +++|.++|+++|+++|+||+|... 
T Consensus       131 -------~~~G~~v~~vd~~d~~~l~~ai~~-~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~~-  197 (403)
T PRK07810        131 -------PRWGVETVFVDGEDLSQWEEALSV-PTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFATP-  197 (403)
T ss_pred             -------HHcCcEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCcc-
Confidence                   011234556677799999999975 5788999988888887776    999999999999999999998521 


Q ss_pred             cccccccccccCCCccee--eecccccC-Cccc-ccccccHHHHh-hccCCCccCCCCCcHHHHHHHHHHHHHhcCh--H
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISNP--A  366 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~  366 (451)
                      .....  . ..|  .|++  +++|.++| |.++ |+++++++.+. .++..........+|+.++.++..|+.+...  .
T Consensus       198 ~~~~~--~-~~g--aDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~~R~~~  272 (403)
T PRK07810        198 LLQRG--L-PLG--ADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLALRVRH  272 (403)
T ss_pred             ccCCh--h-hcC--CcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHHHHHHH
Confidence            12111  1 223  5666  46799986 6665 77888876554 2332111222356788888888777654211  1


Q ss_pred             ------HHHHHHhCCCCcceec------------------ccceeEEEEec
Q 013008          367 ------FLASKLARNPHVKDVR------------------GLGLIIGIEFD  393 (451)
Q Consensus       367 ------~~~~~~~~~~~~~~v~------------------g~G~~~~~~~~  393 (451)
                            .+.+.++.+|.+..|.                  +.|.++.|+++
T Consensus       273 ~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~  323 (403)
T PRK07810        273 SNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD  323 (403)
T ss_pred             HHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence                  1111556666554443                  66888999985

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.75  E-value=2.4e-16  Score=156.70  Aligned_cols=282  Identities=15%  Similarity=0.108  Sum_probs=177.3

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+..+.++...+|+++|++..+.+.+++++||++|+..++..+.           .++|+|++.+++|.+.........
T Consensus        45 ~~Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all-----------~~Gd~Il~~~~~y~~~~~~~~~~~  113 (388)
T PRK08861         45 YDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALL-----------GPDDLIVAPHDCYGGTYRLFNTRA  113 (388)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-----------CCCCEEEEcCCchHHHHHHHHHHH
Confidence            345667777799999999999999999999999999999998664           168999999999965432111110


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                      .         ...-.+.+++..|++++++++.+ ++++|++|.+++++|.+.+    +++|.++|+++|+++|+||+|..
T Consensus       114 ~---------~~gi~v~~vd~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~  179 (388)
T PRK08861        114 N---------KGDFKVQFVDQSDAAALDAALAK-KPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLT  179 (388)
T ss_pred             h---------cCCeEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccc
Confidence            0         00112344555689999999865 6788888877777777776    88999999999999999999953


Q ss_pred             CCcccccccccccCCCccee--eecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-C-
Q 013008          292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-N-  364 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~-  364 (451)
                      . ....     ...+..|++  +++|.++| + ...|+++++ +++.+.++..........+|+.+...+..|+.+. + 
T Consensus       180 ~-~~~~-----pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~lR~  253 (388)
T PRK08861        180 P-VLQK-----PLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGARM  253 (388)
T ss_pred             c-ccCC-----CcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHHHHH
Confidence            1 1111     122346766  45699986 3 677888774 5666655432222233456777665554444321 0 


Q ss_pred             hHHH------HHHHhCCCCcce------------------ecccceeEEEEecCCh---HHHHHHHH--HCCce------
Q 013008          365 PAFL------ASKLARNPHVKD------------------VRGLGLIIGIEFDVSA---TPVVDACR--DSGLL------  409 (451)
Q Consensus       365 ~~~~------~~~~~~~~~~~~------------------v~g~G~~~~~~~~~~~---~~~~~~l~--~~Gv~------  409 (451)
                      +...      .++++.+|.+..                  ..+.|.++.|+++...   .+|.+.|.  ..++.      
T Consensus       254 ~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~s  333 (388)
T PRK08861        254 RVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVES  333 (388)
T ss_pred             HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCCCcc
Confidence            1111      114455554432                  2466888899985322   23333321  11111      


Q ss_pred             -e-eec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          410 -V-LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       410 -~-~~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                       + .|.               | ..+.+|+++.+    |+++.+++.|+++|+++.+
T Consensus       334 l~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----E~~~dli~Dl~~al~~~~~  386 (388)
T PRK08861        334 LICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL----EDAQDLIADLDQAFAKAAE  386 (388)
T ss_pred             eeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHHHHHh
Confidence             1 111               0 12468886554    5677788888888877653

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.75  E-value=1.7e-16  Score=159.00  Aligned_cols=279  Identities=19%  Similarity=0.172  Sum_probs=174.9

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++|+++.+.+..++++||+.|+..++....           .++|+||+.++.|.+.......... 
T Consensus        59 y~r~~~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l-----------~~Gd~Vl~~~~~y~~~~~~~~~~~~-  126 (398)
T PRK07504         59 YSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQV-----------KAGDHVVAARALFGSCRYVVETLLP-  126 (398)
T ss_pred             eecCCCchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHh-----------CCCCEEEEcCCchhHHHHHHHHHHh-
Confidence            3455666789999999999998877889999999988776543           1689999999998765432211100 


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                              .....+.+++..|++++++++++ ++++|++|.++++.|.+.+    +++|.++|+++|+++|+||+|... 
T Consensus       127 --------~~G~~v~~vd~~d~e~l~~ai~~-~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~-  192 (398)
T PRK07504        127 --------RYGIESTLVDGLDLDNWEKAVRP-NTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATP-  192 (398)
T ss_pred             --------hcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCcccc-
Confidence                    01123445555689999999964 5788888888777787776    999999999999999999999632 


Q ss_pred             cccccccccccCCCccee--eecccccC-Ccccc-cccccHHHHh-hccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIG-AALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA  366 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG-~v~~~~~i~~-~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~  366 (451)
                      .....   ..+  ..|++  +++|.+++ |.++| +++++++++. .++..........+|+.++.++..|+.+..  +.
T Consensus       193 ~~~~~---~~~--gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~~R~~~  267 (398)
T PRK07504        193 LFQKP---LEL--GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQ  267 (398)
T ss_pred             ccCCc---hhh--CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHH
Confidence            11111   122  35665  56799986 78875 6667766554 232111112234678888888877765421  11


Q ss_pred             H------HHHHHhCCCCcc------------------eecccceeEEEEecCC---hHHHHHHHH--HC-----Cc--ee
Q 013008          367 F------LASKLARNPHVK------------------DVRGLGLIIGIEFDVS---ATPVVDACR--DS-----GL--LV  410 (451)
Q Consensus       367 ~------~~~~~~~~~~~~------------------~v~g~G~~~~~~~~~~---~~~~~~~l~--~~-----Gv--~~  410 (451)
                      .      +.+.++.+|.+.                  ..+|.|.++.|+++..   ..+|.+.|.  ..     |+  ++
T Consensus       268 ~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~  347 (398)
T PRK07504        268 QTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLI  347 (398)
T ss_pred             HHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCeee
Confidence            1      111344555332                  1245688999999422   223333331  11     11  01


Q ss_pred             -eec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          411 -LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       411 -~~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                       .|.               | ..+.+|+++.+    |+.+.+++.|+++|++++
T Consensus       348 ~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~~  397 (398)
T PRK07504        348 THPATTTHKNLSPEARAELGISEGFLRLSAGL----EDTDDLIEDLAAALKKVR  397 (398)
T ss_pred             eCCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhhh
Confidence             111               0 12568886554    567777888888887654

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.75  E-value=1.7e-16  Score=156.64  Aligned_cols=267  Identities=18%  Similarity=0.088  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhc----CCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          140 IPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHS----NPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~----~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      ..+.+++++++++++.    +.++||+||++|+..++++++......    +..  ++++.+|+.+...|.....+....
T Consensus        38 ~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~h~~~~~~~~~~  115 (345)
T cd06450          38 EMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGR--GIDKLVIVCSDQAHVSVEKAAAYL  115 (345)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhccccc--ccCCeEEEEcCcchhHHHHHHHHH
Confidence            3366677777777774    379999999999999999887432100    000  012345555555666544433322


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEe
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD  286 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D  286 (451)
                      +.....   .+..++.    ..|+++|++.+.+     .++.+|++.-.+++.|.+.+    +++|.++|++||+++|+|
T Consensus       116 g~~~~~---v~~~~~~----~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~l~vD  184 (345)
T cd06450         116 DVKVRL---VPVDEDG----RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKYDLWLHVD  184 (345)
T ss_pred             hcCeEE---eeeCCCC----CcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHhCCeEEEe
Confidence            221111   1111111    1388999998863     13455554444455676655    999999999999999999


Q ss_pred             ccccCCCcccccccccccCC-Cccee--eecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc
Q 013008          287 EVQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS  363 (451)
Q Consensus       287 Ev~tg~gr~G~~~~~~~~~~-~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~  363 (451)
                      ++|.++............++ ..|.+  +++|.+++++++|+++.+                   .+.+.++   ++.+.
T Consensus       185 ~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-------------------~~~~~~~---l~~l~  242 (345)
T cd06450         185 AAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-------------------ALKLWAT---LRRFG  242 (345)
T ss_pred             chhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-------------------HHHHHHH---HHHHh
Confidence            99975422111000000111 35644  567988777888887665                   2222233   33222


Q ss_pred             ChHHH---HH----------HHhCCCCccee-cccceeEEEEecC------ChHHHHHHHHHCCceeeecC---CCCEEE
Q 013008          364 NPAFL---AS----------KLARNPHVKDV-RGLGLIIGIEFDV------SATPVVDACRDSGLLVLTAG---KGNVVR  420 (451)
Q Consensus       364 ~~~~~---~~----------~~~~~~~~~~v-~g~G~~~~~~~~~------~~~~~~~~l~~~Gv~~~~~~---~~~~ir  420 (451)
                      ...+.   ++          .+++++.+..+ ...+.++.|.+..      ...++.+.|.++|+++.+..   .+..+|
T Consensus       243 ~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lR  322 (345)
T cd06450         243 RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLR  322 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEE
Confidence            22111   11          23444433222 2334555665532      34678899999976554321   136799


Q ss_pred             EeCCCCC-CHHHHHHHHHHHHH
Q 013008          421 LVPPLII-SEQELDQAVEILCK  441 (451)
Q Consensus       421 i~~~~~~-t~e~i~~~l~~l~~  441 (451)
                      +++...+ |++|++++++.|++
T Consensus       323 is~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         323 FVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             EEecCCCCCHHHHHHHHHHHHh
Confidence            9988765 99999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.75  E-value=5.3e-16  Score=154.74  Aligned_cols=296  Identities=18%  Similarity=0.197  Sum_probs=196.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccccc--CCC-CC----HHHHHHHHHHhhccC--C-CeEEecCCHHHHHHHHHHHHHHHhhh
Q 013008          112 LGHGDADWIKAVVDQANVLTHVS--NMY-YS----IPQIELAKRLVACSF--A-DRVFFSNTGTEANEAAIKFARKFQRH  181 (451)
Q Consensus       112 lG~~~p~v~~a~~~~~~~~~~~~--~~~-~~----~~~~~l~~~l~~~~~--~-e~v~~~~sG~eA~~~al~~a~~~~~~  181 (451)
                      .|..++.|.+++.+.+.......  ... ..    +...+..+.++++++  . +.|+|++++++|++.++..+..... 
T Consensus         8 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~-   86 (371)
T PF00266_consen    8 TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLK-   86 (371)
T ss_dssp             S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGT-
T ss_pred             ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccc-
Confidence            45688999999999877532211  111 11    225677788888887  4 6799999999999999998753221 


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEcccc
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQ  256 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~  256 (451)
                             ++++|++.+..|++............         ...+..++.     -|++++++.|. .++.+|++.-+.
T Consensus        87 -------~g~~vl~~~~~~~s~~~~~~~~~~~~---------g~~v~~i~~~~~~~~~~~~~~~~l~-~~~~lv~~~~~~  149 (371)
T PF00266_consen   87 -------PGDEVLVTSNEHPSNRYPWEEIAKRK---------GAEVRVIPADPGGSLDLEDLEEALN-PDTRLVSISHVE  149 (371)
T ss_dssp             -------TTCEEEEEESSHHHHHHHHHHHHHHT---------TEEEEEEEEGTTSSCSHHHHHHHHH-TTESEEEEESBE
T ss_pred             -------cccccccccccccccccccccccccc---------hhhhccccccccchhhhhhhhhhhc-cccceEEeeccc
Confidence                   58899999988876652222111000         011222221     27899999996 578999999988


Q ss_pred             CCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHh
Q 013008          257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVAS  334 (451)
Q Consensus       257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~  334 (451)
                      +..|.+.|    +++|.++|+++|+++++|-+++ +|..-    .+.....+|++++|  | ++|+..+|++..+++.++
T Consensus       150 ~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~~----id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~  219 (371)
T PF00266_consen  150 NSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCVP----IDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIE  219 (371)
T ss_dssp             TTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTSS------TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHH
T ss_pred             ccccEEee----eceehhhhhccCCceeEechhc-ccccc----ccccccccceeeecccc-cCCCCchhhheehhhhhh
Confidence            88898888    9999999999999999999986 54331    22223457888776  9 887667899999999888


Q ss_pred             hccCCCccCC------------------C---CCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCcce
Q 013008          335 AINYGDHGST------------------F---AGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKD  380 (451)
Q Consensus       335 ~~~~~~~~~t------------------~---~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~  380 (451)
                      .+.+...+..                  |   +.+.....+..++++.+.+.++   .++          .++.++.+..
T Consensus       220 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~  299 (371)
T PF00266_consen  220 RLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEV  299 (371)
T ss_dssp             HHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred             ccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeE
Confidence            8754321111                  1   2345556666677777633222   222          2334553322


Q ss_pred             -----ecccceeEEEEe-cCChHHHHHHHHHCCceeeecCC-----------CCEEEEeCCCCCCHHHHHHH
Q 013008          381 -----VRGLGLIIGIEF-DVSATPVVDACRDSGLLVLTAGK-----------GNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       381 -----v~g~G~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~-----------~~~iri~~~~~~t~e~i~~~  435 (451)
                           -...+.++.+.+ ..+...+.+.|.++||.+..+..           ++.+|+++....|+||||++
T Consensus       300 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  300 LGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             SSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred             eeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence                 123466677777 35678899999999999987432           26899999999999999875

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.74  E-value=3.1e-16  Score=156.18  Aligned_cols=198  Identities=18%  Similarity=0.145  Sum_probs=139.5

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..++++...+|+++|++..+.+.+++++||++|+..+++...           .++|+|++.+++|.+.......+...
T Consensus        45 Y~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all-----------~~GD~Vl~~~p~y~~~~~~~~~~~~~  113 (382)
T TIGR02080        45 YSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALL-----------GPDDLLVAPHDCYGGTYRLLNALAKK  113 (382)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-----------CCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence            4566777789999999999988899999999999999998664           26899999999997644322111111


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                      .         ...+.+++..|++++++++++ ++++|+++.++++.|.+.+    +++|.++|+++|+++|+||+|..+-
T Consensus       114 ~---------~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~  179 (382)
T TIGR02080       114 G---------CFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSPA  179 (382)
T ss_pred             c---------CeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCcccc
Confidence            0         012233344589999999975 5778888877777777666    8999999999999999999995321


Q ss_pred             cccccccccccCCCccee--eecccccC--Ccccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      .. ..     .....|++  +++|.++|  ++..|++++ ++++.+.+.......+...+|+.+..++..++.+
T Consensus       180 ~~-~p-----l~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl  247 (382)
T TIGR02080       180 LQ-NP-----LALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTL  247 (382)
T ss_pred             cC-Cc-----hhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchH
Confidence            11 11     11224555  67899975  478898876 5777776653333334567888887776666543

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.74  E-value=4.6e-16  Score=148.41  Aligned_cols=266  Identities=14%  Similarity=0.078  Sum_probs=182.9

Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC---
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG---  233 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  233 (451)
                      .+++|+|.+.+.+.+++++..           .++.|++-..+|...... +            .+....+..++.+   
T Consensus       126 diiit~G~t~~l~~~l~~~~N-----------~gd~vlie~~ty~~AL~s-~------------~a~gv~~ipv~md~~G  181 (472)
T KOG0634|consen  126 DIIITNGNTDGLFKVLRTLIN-----------RGDHVLIEEYTYPSALQS-M------------EALGVKIIPVKMDQDG  181 (472)
T ss_pred             eEEEecCCchHHHHHHHHhhc-----------CCCceEEecccchHHHHh-c------------cccCceEEeccccCCC
Confidence            799999999999999998883           688999999999654322 1            1221122222222   


Q ss_pred             -CHHHHHHhcCC--------CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc---cc----
Q 013008          234 -NIEATRKLIQP--------GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT---GY----  297 (451)
Q Consensus       234 -d~~~le~~l~~--------~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~---G~----  297 (451)
                       ++|.|++.+..        .+.....+-|...|+.+...+.+-.++|.+||+|||+++|.||+|--+-..   +.    
T Consensus       182 i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~  261 (472)
T KOG0634|consen  182 IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELE  261 (472)
T ss_pred             CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCcccc
Confidence             68999999861        236788888864443334679999999999999999999999998433211   10    


Q ss_pred             --ccc--------------ccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH
Q 013008          298 --LWA--------------HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK  361 (451)
Q Consensus       298 --~~~--------------~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~  361 (451)
                        .+.              .+-.|.+...-+|||-++.|+|+||+.+++.+++++-......|-+.+.+++....+.|+.
T Consensus       262 ~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~  341 (472)
T KOG0634|consen  262 SPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKR  341 (472)
T ss_pred             CccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHH
Confidence              011              1111222334489999999999999999998887765444455666777888888888877


Q ss_pred             hcChHHHHH------------------HHhCCC-C--cceecccceeEEEEec-------CC----hHHHHHHHHHCCce
Q 013008          362 ISNPAFLAS------------------KLARNP-H--VKDVRGLGLIIGIEFD-------VS----ATPVVDACRDSGLL  409 (451)
Q Consensus       362 ~~~~~~~~~------------------~~~~~~-~--~~~v~g~G~~~~~~~~-------~~----~~~~~~~l~~~Gv~  409 (451)
                      .-.+++++.                  +-+.+| .  .-..+..|+|+|++++       ..    ...+...+.++||.
T Consensus       342 wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~  421 (472)
T KOG0634|consen  342 WGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVK  421 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeE
Confidence            655544332                  224455 2  1224556999999884       11    12355667789999


Q ss_pred             eeecCC---------CC-EEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          410 VLTAGK---------GN-VVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       410 ~~~~~~---------~~-~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +.++..         .. ++|++.+++ ..|+++++++|+..++++--
T Consensus       422 ~v~G~~F~v~p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike~f  468 (472)
T KOG0634|consen  422 LVCGSWFMVDPESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKEHF  468 (472)
T ss_pred             EecCceeEEcCccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHHHh
Confidence            886631         12 789988876 77899999999999998753

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.74  E-value=4.3e-16  Score=154.76  Aligned_cols=279  Identities=15%  Similarity=0.132  Sum_probs=174.1

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +....++...+|+++++++.+.+.+++++||++|+..++..+.           +++|+||+.++.|.+.........  
T Consensus        55 Y~r~~npt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all-----------~~GD~Vvv~~~~Y~~t~~l~~~~l--  121 (394)
T PRK09028         55 YGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFL-----------KAGDHLLMVDSCYEPTRDLCDKIL--  121 (394)
T ss_pred             ecCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEECCCcHHHHHHHHHhh--
Confidence            3444455678999999999887789999999999999988654           268999999999976643221100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++..|.+.+++++.+ ++++|++|.+.++.|.+.+    +++|.++|++||+++|+||+|+.  
T Consensus       122 -------~~~Gi~v~~v~~~~~e~l~~~l~~-~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~--  187 (394)
T PRK09028        122 -------KGFGIETTYYDPMIGEGIRELIRP-NTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS--  187 (394)
T ss_pred             -------hhcceEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc--
Confidence                   011123445555677889998864 6789999988777776655    99999999999999999999952  


Q ss_pred             cccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hHH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAF  367 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~  367 (451)
                        +.  .+.-..+..|++  +..|.++| | .-.|+++.++++.+.+...........+|..+...+..|+.+.-  +..
T Consensus       188 --p~--~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~  263 (394)
T PRK09028        188 --PI--NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQH  263 (394)
T ss_pred             --cc--cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHH
Confidence              11  122223456776  45699986 4 77788777777766554221111223567776665554443210  111


Q ss_pred             ------HHHHHhCCCCccee------------------cccceeEEEEec-CCh---HHHHHHHH--HCCc--------e
Q 013008          368 ------LASKLARNPHVKDV------------------RGLGLIIGIEFD-VSA---TPVVDACR--DSGL--------L  409 (451)
Q Consensus       368 ------~~~~~~~~~~~~~v------------------~g~G~~~~~~~~-~~~---~~~~~~l~--~~Gv--------~  409 (451)
                            +.++++.+|.+..|                  .|.|.++.|+++ ...   .+|.+.|.  ..+.        +
T Consensus       264 ~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG~~~sLv  343 (394)
T PRK09028        264 EKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLI  343 (394)
T ss_pred             HHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccCCCccee
Confidence                  11155556644332                  356789999985 222   23433332  1111        1


Q ss_pred             eeec-----------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          410 VLTA-----------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       410 ~~~~-----------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ..|.           + .++.+||++.+    |+.+.+++.|+++|+..+
T Consensus       344 ~~p~~~~~~~~~~~~~~~~~liR~svGl----Ed~~dLi~Dl~~Al~~~~  389 (394)
T PRK09028        344 LGVFGINKLRTATNWDFSKPLIRLHIGL----EDVDDLIADLEAGFERYN  389 (394)
T ss_pred             ECCCCcCccCchhhhcCCCCeEEEEeCc----CCHHHHHHHHHHHHHHHH
Confidence            1111           0 12568887665    456666777777776554

>PRK06460 hypothetical protein; Provisional

Probab=99.74  E-value=4.7e-16  Score=154.77  Aligned_cols=278  Identities=18%  Similarity=0.191  Sum_probs=168.9

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +....++...+|+++++++.+.+..+.++||++|+..++..+.           .++|+||+.++.|.+.........  
T Consensus        39 y~r~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~-----------~~Gd~Vl~~~~~~~~ty~~~~~~~--  105 (376)
T PRK06460         39 YSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALL-----------KPGNSVLVHRDMFGRSYRFFTDYL--  105 (376)
T ss_pred             eeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEecCCcCcHHHHHHHHH--
Confidence            3445566688999999999986666677889999999888654           168899998877644321111100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+..++.++.+.++++++ .++++|+++.++++.|.+.+    +++|.++|++||+++|+||+|... 
T Consensus       106 -------~~~G~~v~~~~~~~~~~l~~~~~-~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-  172 (376)
T PRK06460        106 -------KNWGVNVDASNPGSDNIIEKAKS-KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-  172 (376)
T ss_pred             -------HhhCcEEEEECCCCHHHHHHhcC-CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-
Confidence                   00112244455556666666654 46788888888888887776    788999999999999999998632 


Q ss_pred             cccccccccccCCCccee--eecccccC--CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH-
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA-  366 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~-  366 (451)
                      .....  . .++  .|++  +++|.++|  +.++|++++++++++.+.......+.+.+|..+..++..++.++.  +. 
T Consensus       173 ~~~~~--l-~~~--~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l~~r~~~~  247 (376)
T PRK06460        173 INQKP--L-ELG--ADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMDVI  247 (376)
T ss_pred             ccCCh--h-hcC--CCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHH
Confidence            11111  1 123  4554  78899975  367999999999988875433233344556555554444433311  11 


Q ss_pred             -----HHHHHHhCCCCcce------------------ecccceeEEEEecCC---hHHHHHHHH--HCC-----c---ee
Q 013008          367 -----FLASKLARNPHVKD------------------VRGLGLIIGIEFDVS---ATPVVDACR--DSG-----L---LV  410 (451)
Q Consensus       367 -----~~~~~~~~~~~~~~------------------v~g~G~~~~~~~~~~---~~~~~~~l~--~~G-----v---~~  410 (451)
                           .+.+.++++|.+..                  ..+.|.++.|+++..   ..+|.+.|.  ..+     +   +.
T Consensus       248 ~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~  327 (376)
T PRK06460        248 NRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVIS  327 (376)
T ss_pred             HHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceEEe
Confidence                 11113344453322                  246688999998533   233444331  111     1   11


Q ss_pred             eec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          411 LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       411 ~~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .|.               | ..+.+|+++.+    ||.+.+++.|+++|+.+
T Consensus       328 ~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~  375 (376)
T PRK06460        328 HPATMSHRTLSLEERKIVGITDSLLRLSVGI----EDVNDLIEDLDRALSTL  375 (376)
T ss_pred             CccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            111               0 12568886554    56777888888888654

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.74  E-value=6.5e-16  Score=155.46  Aligned_cols=303  Identities=17%  Similarity=0.107  Sum_probs=189.1

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      -+++|++|+.+....  +. .........++.++++++++   .+.+++++||+++++.++....           +++|
T Consensus        20 ~~~~V~~a~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-----------~~Gd   85 (401)
T PLN02409         20 IPERVLRAMNRPNED--HR-SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-----------SPGD   85 (401)
T ss_pred             CCHHHHHHhcCCCCC--CC-CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-----------CCCC
Confidence            456777766543211  11 11122336677788888876   2468999999999999887543           2689


Q ss_pred             eEEEEcCCccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC---CCeEEEEEccccCCCCccccCHH
Q 013008          192 EFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       192 ~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      +||+.+++|++...... ...+.....   .+...+..    -|++++++.++.   +++++|++..+.+.+|.+.+   
T Consensus        86 ~Vlv~~~~~~~~~~~~~~~~~g~~v~~---v~~~~~~~----~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~---  155 (401)
T PLN02409         86 KVVSFRIGQFSLLWIDQMQRLNFDVDV---VESPWGQG----ADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND---  155 (401)
T ss_pred             EEEEeCCCchhHHHHHHHHHcCCceEE---EECCCCCC----CCHHHHHHHHhhCcCCCccEEEEEeecccccccCC---
Confidence            99999988866432111 111111100   01111100    268999999974   36788888777667787776   


Q ss_pred             HHHHHHHH--HHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhccCCC---
Q 013008          268 FLQFLRDA--CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYGD---  340 (451)
Q Consensus       268 ~l~~l~~l--~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~~---  340 (451)
                       +++|.++  |++||+++|+|++++ +|.  .....+  ....|+++  .+|++++..++|++++++++++.+.+..   
T Consensus       156 -~~~i~~l~~~~~~g~~~vvD~v~s-~g~--~~id~~--~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~  229 (401)
T PLN02409        156 -LAGVRKLLDCAQHPALLLVDGVSS-IGA--LDFRMD--EWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPR  229 (401)
T ss_pred             -HHHHHHHHhhhccCcEEEEEcccc-cCC--cccccc--ccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCC
Confidence             7777777  999999999999986 532  112222  23456654  5699987567999999998887764321   


Q ss_pred             ------------ccC---CCCCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCC--Cccee-cc-cceeE
Q 013008          341 ------------HGS---TFAGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNP--HVKDV-RG-LGLII  388 (451)
Q Consensus       341 ------------~~~---t~~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~--~~~~v-~g-~G~~~  388 (451)
                                  ..+   .++.+...+.+..++++.+.+.++   .++          .++..+  .+..- .. .+.+.
T Consensus       230 ~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~  309 (401)
T PLN02409        230 VFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVT  309 (401)
T ss_pred             eecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceE
Confidence                        011   234555667778888887644322   121          122222  11110 11 22344


Q ss_pred             EEEec--CChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          389 GIEFD--VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       389 ~~~~~--~~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++.+.  .+..++.+.|+ +.|+.+.++.   .+..+|+...-.++++++..++++|++++.++.
T Consensus       310 ~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g  374 (401)
T PLN02409        310 AVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG  374 (401)
T ss_pred             EEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            55542  35567887776 5699888663   257899998888899999999999999998754

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.74  E-value=6.4e-16  Score=152.91  Aligned_cols=284  Identities=20%  Similarity=0.199  Sum_probs=176.0

Q ss_pred             HHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCc
Q 013008          121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF  200 (451)
Q Consensus       121 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~y  200 (451)
                      +++.+.+....+    ...+...++++.++++++.+.+++++||++|+..+++.+..          .++++||+..++|
T Consensus         3 ~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~----------~~gd~vl~~~~~~   68 (352)
T cd00616           3 EAVEEVLDSGWL----TLGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGI----------GPGDEVIVPSFTF   68 (352)
T ss_pred             HHHHHHHHcCCc----cCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCC----------CCCCEEEeCCcch
Confidence            455555554222    33455889999999999988999999999999999987631          1578999999999


Q ss_pred             cCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC
Q 013008          201 HGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG  280 (451)
Q Consensus       201 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g  280 (451)
                      |+........+....+    .+..+..   ...|++++++.+.+ ++++|++..+   .|...+    +++|+++|++||
T Consensus        69 ~~~~~~~~~~g~~~~~----~~~~~~~---~~~d~~~l~~~i~~-~~~~v~~~~~---~G~~~~----~~~i~~l~~~~~  133 (352)
T cd00616          69 VATANAILLLGATPVF----VDIDPDT---YNIDPELIEAAITP-RTKAIIPVHL---YGNPAD----MDAIMAIAKRHG  133 (352)
T ss_pred             HHHHHHHHHcCCeEEE----EecCCCc---CCcCHHHHHHhcCc-CCeEEEEECC---CCCcCC----HHHHHHHHHHcC
Confidence            8765433222211110    1111100   01278999998864 5677776543   454444    899999999999


Q ss_pred             CEEEEeccccCCCcccccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccCC----C-----------
Q 013008          281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG----D-----------  340 (451)
Q Consensus       281 ~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~----~-----------  340 (451)
                      +++|+|++|+ +|....   ....+...|+.++|    |.+++| ..|+++.+ +++.+.++..    .           
T Consensus       134 i~li~D~a~~-~g~~~~---~~~~~~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (352)
T cd00616         134 LPVIEDAAQA-LGATYK---GRKVGTFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEI  208 (352)
T ss_pred             CeEEEECCCC-CCCeEC---CEEcccCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccce
Confidence            9999999996 432211   11223335666665    989543 45777665 5766654321    0           


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecc------cceeEEEEec----CChHHHH
Q 013008          341 HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRG------LGLIIGIEFD----VSATPVV  400 (451)
Q Consensus       341 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g------~G~~~~~~~~----~~~~~~~  400 (451)
                      .+.++..+++.++.++..++.++  .+.++          .++.++.+..+..      ...++.+.++    ....++.
T Consensus       209 ~~~~~~~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (352)
T cd00616         209 LGYNYRLSEIQAAIGLAQLEKLD--EIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELI  286 (352)
T ss_pred             eeeccCcCHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHH
Confidence            11233456777777766555432  12111          2333443322211      1234444443    3567899


Q ss_pred             HHHHHCCceeeecCC--------------------------CCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          401 DACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       401 ~~l~~~Gv~~~~~~~--------------------------~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      +.|.++||.+.....                          .+.+|+.+....|++|++.++++|+
T Consensus       287 ~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         287 EALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             HHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            999999997652100                          0468998888999999999998874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.73  E-value=2.8e-16  Score=155.35  Aligned_cols=274  Identities=16%  Similarity=0.151  Sum_probs=174.5

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .+..+.++...+|+++|+++.+.+.++.++||++|+.+++.++.            ++|+||+..+.|++......... 
T Consensus        47 ~Y~R~~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~~l~------------~GD~VI~~~~~yg~~~~~~~~~~-  113 (364)
T PRK07269         47 DYTRTKNPTRAKLEETLAAIESADYALATSSGMSAIVLAFSVFP------------VGSKVVAVRDLYGGSFRWFNQQE-  113 (364)
T ss_pred             ceeCCCCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhC------------CCCEEEEecCCcCchHHHHHHHH-
Confidence            34556677789999999999999999999999999999985322            68999999999966542211110 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                               +. .++...-..|++++++++++ ++++|++|.+.++.|....    +++|+++|+++|+++|+||++...
T Consensus       114 ---------~~-~~~~~~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~~  178 (364)
T PRK07269        114 ---------KE-GRFHFTYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYSP  178 (364)
T ss_pred             ---------hc-CcEEEEecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc
Confidence                     00 01111112389999999975 5678888877777776665    999999999999999999996321


Q ss_pred             CcccccccccccCCCcceeee--cccccC-C-cccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h
Q 013008          293 GRTGYLWAHEHYGIFPDIMTL--AKPLAG-G-LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P  365 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~--sK~lg~-G-~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~  365 (451)
                       ..+     ...+...|++++  +|.++| | .-.|++++ ++++.+.++..........+|+.++.++..|+.+..  +
T Consensus       179 -~~~-----~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL~~r~~  252 (364)
T PRK07269        179 -IYQ-----RPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRME  252 (364)
T ss_pred             -ccC-----CchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHHHHHH
Confidence             111     223445777754  599986 4 44577776 467777664221122245688888877776664321  1


Q ss_pred             ------HHHHHHHhCCCCccee--cccceeEEEEecC--ChHHHHHHHH--H--------CCceeeecC-----------
Q 013008          366 ------AFLASKLARNPHVKDV--RGLGLIIGIEFDV--SATPVVDACR--D--------SGLLVLTAG-----------  414 (451)
Q Consensus       366 ------~~~~~~~~~~~~~~~v--~g~G~~~~~~~~~--~~~~~~~~l~--~--------~Gv~~~~~~-----------  414 (451)
                            ..+.++++.+|.+..+  ++.|.++.|++..  ...+|.+.+.  .        +.+++.|..           
T Consensus       253 ~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r  332 (364)
T PRK07269        253 RSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVR  332 (364)
T ss_pred             HHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHH
Confidence                  1111156778855433  5788899998842  1223333221  0        133333320           


Q ss_pred             -----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          415 -----KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       415 -----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                           ..+.+|+++.+    |+.+.+++-|+++|+
T Consensus       333 ~~~Gi~~~liRlsvGl----E~~~dli~dl~~al~  363 (364)
T PRK07269        333 HSYGLTDDLLRLSIGI----EDARDLIADLKQALE  363 (364)
T ss_pred             HhcCCCCCeEEEEecc----CCHHHHHHHHHHHhc
Confidence                 12568886554    567777777777764

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.73  E-value=4.1e-16  Score=157.35  Aligned_cols=166  Identities=20%  Similarity=0.161  Sum_probs=124.4

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++|+++.+.+.+++++||++|+..++..+..           ++++||+.++.|++.........  
T Consensus        51 ysr~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~-----------~Gd~Vl~~~~~y~~t~~~~~~~~--  117 (418)
T TIGR01326        51 YSRLMNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQ-----------AGDNIVSSSYLYGGTYNLFKHTL--  117 (418)
T ss_pred             eECCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC-----------CCCEEEEECCCcHHHHHHHHHHH--
Confidence            45566777899999999999988999999999999999986652           58899999999977432211100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++.+|++++++++.+ ++++|++|.++++.|.+.+    +++|+++|++||+++|+||+|. .+
T Consensus       118 -------~~~G~~v~~v~~~d~~~l~~~l~~-~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~  184 (418)
T TIGR01326       118 -------KRLGIEVRFVDPDDPEEFEKAIDE-NTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TP  184 (418)
T ss_pred             -------HHcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hh
Confidence                   011123455666799999999965 5778888988777777666    9999999999999999999985 22


Q ss_pred             cccccccccccCCCccee--eecccccC-CcccccccccH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVTE  330 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~~  330 (451)
                      ..     .......+|++  +++|.+++ |+++|++++++
T Consensus       185 ~~-----~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       185 YL-----CRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             hc-----CCchhcCCeEEEECccccccCCccceEEEEEec
Confidence            11     11222346766  67899997 89999988754

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.72  E-value=1.2e-15  Score=144.56  Aligned_cols=258  Identities=21%  Similarity=0.201  Sum_probs=169.2

Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC--
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--  232 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  232 (451)
                      +++++++++++.|++...-++.           +|++..+++.|-|.|+....---+              ++..+|.  
T Consensus       146 P~~~Vv~~G~T~ane~l~fcLa-----------dpgdafLvPtPyY~gfdrdl~~rT--------------gveivpv~c  200 (471)
T KOG0256|consen  146 PERVVVTNGATSANETLMFCLA-----------DPGDAFLVPTPYYPGFDRDLRWRT--------------GVEIVPVHC  200 (471)
T ss_pred             ccceEEecccchhhHHHHHHhc-----------CCCceeeecCCCCCcccccceecc--------------CceEEEEEe
Confidence            7899999999999999888766           489999999999999854322222              2222221  


Q ss_pred             ---C----CHHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC--CCccccc
Q 013008          233 ---G----NIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYL  298 (451)
Q Consensus       233 ---~----d~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~  298 (451)
                         |    +.++||.++.     ..+++.||+...+++-|+ ..+++.|..+...|.++++-+|+||||++  |+..+-.
T Consensus       201 ~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~-~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~  279 (471)
T KOG0256|consen  201 SSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGT-TLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFR  279 (471)
T ss_pred             ecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCC-ccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCce
Confidence               1    5788887775     345666555444444444 46899999999999999999999999987  4333211


Q ss_pred             cccccc---CCCcce----eeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHH
Q 013008          299 WAHEHY---GIFPDI----MTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA  369 (451)
Q Consensus       299 ~~~~~~---~~~pdi----~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  369 (451)
                      ...+..   ...||.    -++||=+| .|+|+|.|.. ++++........  +-...++..|.-....|.   ++.+.+
T Consensus       280 Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kms--sf~~vSs~tQ~~la~LLS---D~~f~~  354 (471)
T KOG0256|consen  280 SVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMS--SFGLVSSQTQYLLASLLS---DEEFTR  354 (471)
T ss_pred             EHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHh--hccCCcHHHHHHHHHHhc---hHHHHH
Confidence            111111   124553    37899999 6999999876 567776654322  112245666665554443   333332


Q ss_pred             H--------HH------------hCCCCcceecccceeEEEEec--------CChHHHHHHHHHC-CceeeecC-----C
Q 013008          370 S--------KL------------ARNPHVKDVRGLGLIIGIEFD--------VSATPVVDACRDS-GLLVLTAG-----K  415 (451)
Q Consensus       370 ~--------~~------------~~~~~~~~v~g~G~~~~~~~~--------~~~~~~~~~l~~~-Gv~~~~~~-----~  415 (451)
                      .        +.            ..+|++  -.+.|+++|+++.        .....+.++++++ ++.+.|+.     .
T Consensus       355 ~yl~en~~Rl~~rh~~~~~gLk~lgI~cl--~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~E  432 (471)
T KOG0256|consen  355 EYLRENNKRLRIRHRYIVEGLKALGIPCL--KSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHE  432 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCcee--ecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecC
Confidence            2        11            123333  3577999999983        1234577788877 99999874     2


Q ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          416 GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       416 ~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++++|++.. +..++.++-+++||...+...
T Consensus       433 pGWFRvcFA-n~~~~t~~~am~Ri~~~~~~~  462 (471)
T KOG0256|consen  433 PGWFRVCFA-NMSEETLEVAMRRLKQFLDSQ  462 (471)
T ss_pred             CCeEEEEec-cCCHHHHHHHHHHHHHHHHhh
Confidence            578888643 445565666999999988743

>PRK14012 cysteine desulfurase; Provisional

Probab=99.72  E-value=3.4e-15  Score=150.64  Aligned_cols=316  Identities=16%  Similarity=0.157  Sum_probs=182.6

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHh--h-cccccCCCC------CHHHHHHHHHHhhccC--CCeEEecCCHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQAN--V-LTHVSNMYY------SIPQIELAKRLVACSF--ADRVFFSNTGTE  166 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~--~-~~~~~~~~~------~~~~~~l~~~l~~~~~--~e~v~~~~sG~e  166 (451)
                      +-|+|..+.      +..++.+.+++.+.+.  . .........      .....+++++++++++  .+.+++++||++
T Consensus         4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~   77 (404)
T PRK14012          4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE   77 (404)
T ss_pred             eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence            357776553      4578899999988775  2 211111000      1225567788888887  467999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc--cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP  244 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~  244 (451)
                      |+..+++++..+..       .+++.||+.+..|+........+  .+...   .+.+..++..    -|+++|++++.+
T Consensus        78 al~~~l~~l~~~~~-------~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~---~~v~~~~~g~----~d~~~l~~~i~~  143 (404)
T PRK14012         78 SDNLAIKGAAHFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGFEV---TYLDPQSNGI----IDLEKLEAAMRD  143 (404)
T ss_pred             HHHHHHHHHHHhhc-------CCCCEEEEecCccHHHHHHHHHHHhCCCEE---EEEccCCCCc----CCHHHHHHhcCC
Confidence            99999987643211       14788888877765433222111  11110   0011111100    289999999975


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcc
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLP  322 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~  322 (451)
                       ++++|++..+++++|.+.+    +++|.++|++||+++|+|++|+ +|...    .+.....+|++++|  |.+|++ +
T Consensus       144 -~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~----~~~~~~~~D~~~~s~~K~~gp~-g  212 (404)
T PRK14012        144 -DTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP----IDLSKLKVDLMSFSAHKIYGPK-G  212 (404)
T ss_pred             -CCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCcccCCCCEEEEehhhccCCC-c
Confidence             5678888888888888776    8999999999999999999996 43221    11112458888777  977543 6


Q ss_pred             cccccccHHHHhhccCCCccC------CC-CCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCCCCccee--
Q 013008          323 IGAALVTEKVASAINYGDHGS------TF-AGSPLVCNAAIAVLDKISN--PAFLAS----------KLARNPHVKDV--  381 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~------t~-~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~~~~~~v--  381 (451)
                      +|+++++++....+.+...+.      .. +.+.....+..++++.+..  +...++          .++.++.+...  
T Consensus       213 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~  292 (404)
T PRK14012        213 IGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDIEEVYLNGD  292 (404)
T ss_pred             eEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence            788877765433333211111      01 1233333333345543321  111111          22334433211  


Q ss_pred             ---cccc-eeEEEEecCChHHHHHHHHHCCceeeec------C----------------CCCEEEEeCCCCCCHHHHHHH
Q 013008          382 ---RGLG-LIIGIEFDVSATPVVDACRDSGLLVLTA------G----------------KGNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       382 ---~g~G-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------~----------------~~~~iri~~~~~~t~e~i~~~  435 (451)
                         +..+ ..+++.+ ....++...|.  ++.+..+      .                ..+.+|+++....|++|+|++
T Consensus       293 ~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~  369 (404)
T PRK14012        293 LEQRVPGNLNVSFNY-VEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYA  369 (404)
T ss_pred             ccccCCCEEEEEEeC-cCHHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHH
Confidence               1111 1233332 23345655553  3332211      0                125789999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 013008          436 VEILCKTLPVLD  447 (451)
Q Consensus       436 l~~l~~~l~~~~  447 (451)
                      ++.|+++++.++
T Consensus       370 ~~~l~~~~~~~~  381 (404)
T PRK14012        370 IELVRKSIGKLR  381 (404)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.72  E-value=5.4e-16  Score=155.10  Aligned_cols=194  Identities=16%  Similarity=0.122  Sum_probs=131.7

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+..+.++...+|+++++++.+.+.+++++||++|+..++..+.           .++|+||+.++.|.+.........
T Consensus        57 ~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~-----------~~GD~Vl~~~~~y~~~~~~~~~~~  125 (394)
T PRK07050         57 WRYGLHATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLV-----------KAGDDVLIPDNAYGPNRDHGEWLA  125 (394)
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHh-----------CCCCEEEEecCCcccHHHHHHHHH
Confidence            345667777789999999999999999999999999999998664           168999999999976542110100


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                               ......+.+++..+.+++++++++ ++++|++|.+.++.|.    ...+++|.++|++||+++|+|++|..
T Consensus       126 ---------~~~Gi~v~~vd~~~~~~l~~~i~~-~tklV~le~p~Np~~~----~~di~~I~~ia~~~gi~livD~a~a~  191 (394)
T PRK07050        126 ---------RDFGITVRFYDPLIGAGIADLIQP-NTRLIWLEAPGSVTME----VPDVPAITAAARARGVVTAIDNTYSA  191 (394)
T ss_pred             ---------HhcCeEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCcc----HhhHHHHHHHHHHcCCEEEEECCccc
Confidence                     001122344544466889998865 5678888876665543    44499999999999999999999852


Q ss_pred             CCcccccccccccCCCccee--eecccccCC--cccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHH
Q 013008          292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAGG--LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAI  356 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G--~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~  356 (451)
                       +..-.   ....|  .|++  +++|.++||  .+.|++++ ++++++.++........+.+|+.+..++
T Consensus       192 -~~~~~---~l~~G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~l  255 (394)
T PRK07050        192 -GLAFK---PFEHG--VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVL  255 (394)
T ss_pred             -ccccC---HHHcC--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence             11111   11123  4655  678999863  67887776 6778777653322223345566554443

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.72  E-value=5e-16  Score=154.85  Aligned_cols=197  Identities=16%  Similarity=0.075  Sum_probs=134.9

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++++++++.+.+++++||++|+..++..+..           ++|.||+..+.|++.......+.  
T Consensus        47 y~r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~-----------~GD~Vlv~~~~y~~~~~~~~~~~--  113 (385)
T PRK08574         47 YSREENPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLK-----------AGDRVVLPMEAYGTTLRLLKSLE--  113 (385)
T ss_pred             EECCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHHHHHHHhh--
Confidence            44556667889999999999988889999999999999986641           68999999999976543221110  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                              .....+.+++ .|++++++++++.++++|++|.++++.|.+.+    +++|.++|++||+++|+||+|+ .+
T Consensus       114 --------~~g~~v~~~~-~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a-~~  179 (385)
T PRK08574        114 --------KFGVKVVLAY-PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFA-TP  179 (385)
T ss_pred             --------ccCcEEEEEC-CCHHHHHHhcCccCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCC-cc
Confidence                    0011122222 37899999997546888889988888887776    8999999999999999999984 21


Q ss_pred             cccccccccccCCCccee--eecccccC-C-ccccccc-ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAAL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~-~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      ......   ..|  .|++  +++|.++| | .-.|+++ .++++.+.++..........+|+.++.++..|+.+
T Consensus       180 ~~~~~l---~~G--aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL  248 (385)
T PRK08574        180 LLYRPL---RHG--ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTL  248 (385)
T ss_pred             ccCChh---hhC--CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH
Confidence            111111   234  4555  67899986 5 3346454 46777776643222233445677777766666543

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.72  E-value=1.2e-15  Score=153.27  Aligned_cols=198  Identities=17%  Similarity=0.148  Sum_probs=140.6

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      ++.+..+...+|+++++++.+.+..+.++||+.|+..+++...           .++|+||+..+.|.+ +.......  
T Consensus        59 y~r~~~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll-----------~~Gd~Viv~~~~y~~-t~~~~~~~--  124 (403)
T PRK07503         59 YSRISNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLL-----------RPGDEVIVDQTLYGC-TFAFLHHG--  124 (403)
T ss_pred             eeCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-----------CCCCEEEEccCccch-HHHHHHHH--
Confidence            4555666788999999999987778888999999999988553           168999999888733 32211100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                            .......+.+++.+|++++++++.+ ++++|++|.++++.|.+.+    +++|.++|++||+++|+|++|... 
T Consensus       125 ------~~~~G~~v~~vd~~d~~~l~~~i~~-~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~-  192 (403)
T PRK07503        125 ------LGEFGVTVRHVDLTDPAALKAAISD-KTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTP-  192 (403)
T ss_pred             ------HhhCCEEEEEeCCCCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-
Confidence                  0011233456666789999999975 5778888877777787666    999999999999999999999632 


Q ss_pred             cccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHh
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      ..+...     +...|++  +++|.+++ | .+.|+++.++++++.++..  ........+|+.++.++..|+.+
T Consensus       193 ~~~~~l-----~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl  262 (403)
T PRK07503        193 YLQRPL-----ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTL  262 (403)
T ss_pred             ccCCch-----hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchH
Confidence            222221     2345655  57899986 5 7889999888888877522  22223556788887777766644

>PLN02651 cysteine desulfurase

Probab=99.72  E-value=7.8e-16  Score=153.11  Aligned_cols=291  Identities=16%  Similarity=0.142  Sum_probs=178.3

Q ss_pred             CCCCHHHHHHHHHHHhhc-ccccC-CC-----CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 013008          113 GHGDADWIKAVVDQANVL-THVSN-MY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSN  183 (451)
Q Consensus       113 G~~~p~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~  183 (451)
                      +..++.+.+++.+.+... ..... ..     ......++.++++++++  .+.++|++|+++|+..++..+.....   
T Consensus         9 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~---   85 (364)
T PLN02651          9 TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYK---   85 (364)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcc---
Confidence            446789999998877542 11111 01     11225677788888887  56899999999999999987653211   


Q ss_pred             CCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCC
Q 013008          184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGE  258 (451)
Q Consensus       184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~  258 (451)
                          .++++||+.+..|+........+. ...         ..+..++.     -|++++++++++ ++++|++..+++.
T Consensus        86 ----~~g~~vl~~~~~h~s~~~~~~~~~-~~g---------~~v~~v~~~~~~~~d~~~l~~~i~~-~t~lv~v~~~~n~  150 (364)
T PLN02651         86 ----DKKKHVITTQTEHKCVLDSCRHLQ-QEG---------FEVTYLPVKSDGLVDLDELAAAIRP-DTALVSVMAVNNE  150 (364)
T ss_pred             ----CCCCEEEEcccccHHHHHHHHHHH-hcC---------CEEEEEccCCCCcCCHHHHHHhcCC-CcEEEEEECCCCC
Confidence                146778886655543322111111 000         11112221     278999999975 5778888888888


Q ss_pred             CCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhc
Q 013008          259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAI  336 (451)
Q Consensus       259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~  336 (451)
                      +|.+.+    +++|.++|++||+++++|.+|+ +|..  .  ++...+.+|++++|  | ++|...+|++.++++..+.+
T Consensus       151 tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~--~--~~~~~~~~D~~~~s~hK-~~gp~G~g~l~v~~~~~~~l  220 (364)
T PLN02651        151 IGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI--P--VDVDDLGVDLMSISGHK-IYGPKGVGALYVRRRPRVRL  220 (364)
T ss_pred             ceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc--c--cCcccCCCCEEEechhh-hCCCCceEEEEEcCCCCCCC
Confidence            888877    9999999999999999999996 4321  1  22223457888775  8 54335688988888766665


Q ss_pred             cCCCcc-------CCCCCcHHHHHHHHHHHHHhcCh--HHHHH-----------HHhCCCCcceecc------cceeEEE
Q 013008          337 NYGDHG-------STFAGSPLVCNAAIAVLDKISNP--AFLAS-----------KLARNPHVKDVRG------LGLIIGI  390 (451)
Q Consensus       337 ~~~~~~-------~t~~~~~~~~aaa~aal~~~~~~--~~~~~-----------~~~~~~~~~~v~g------~G~~~~~  390 (451)
                      .+...+       ...+.|..++.+..++|+.+.+.  ...++           +.+..+.+.-+..      ...++.|
T Consensus       221 ~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~  300 (364)
T PLN02651        221 EPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNL  300 (364)
T ss_pred             CccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEE
Confidence            443211       11224556677777788776431  11111           1122333322211      1235555


Q ss_pred             Eec-CChHHHHHHHHHCCceeeecC----------------------CCCEEEEeCCCCCCHHHHH
Q 013008          391 EFD-VSATPVVDACRDSGLLVLTAG----------------------KGNVVRLVPPLIISEQELD  433 (451)
Q Consensus       391 ~~~-~~~~~~~~~l~~~Gv~~~~~~----------------------~~~~iri~~~~~~t~e~i~  433 (451)
                      .+. .+..++.+.|.+  |.+..+.                      ..+.+|+++....|+||||
T Consensus       301 ~~~~~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        301 SFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             EeCCCCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence            553 456778877754  5554321                      0257999999999999985

>PRK05968 hypothetical protein; Provisional

Probab=99.71  E-value=5.2e-16  Score=155.12  Aligned_cols=276  Identities=17%  Similarity=0.086  Sum_probs=174.4

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+..+...+|+++++++.+.+..++++||+.|+..++....           .++|+||+..+.|++.........  
T Consensus        57 Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~-----------~~Gd~Vl~~~~~y~~t~~~~~~~~--  123 (389)
T PRK05968         57 YSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFV-----------EPGDRIVAVRHVYPDAFRLFETIL--  123 (389)
T ss_pred             ccCCCChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHHH--
Confidence            4555666688999999999997777888999999999887543           168999999999876432111100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++.+|++++++.+.  ++++|++|.+.+..+    +...+++|.++|++||+++|+|++|... 
T Consensus       124 -------~~~G~~v~~vd~~d~~~l~~~i~--~tklV~ie~pt~~~~----~~~dl~~i~~la~~~gi~vivD~a~a~~-  189 (389)
T PRK05968        124 -------KRMGVEVDYVDGRDEEAVAKALP--GAKLLYLESPTSWVF----ELQDVAALAALAKRHGVVTMIDNSWASP-  189 (389)
T ss_pred             -------HHcCceEEEeCCCCHHHHHHhcc--cCCEEEEECCCCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcch-
Confidence                   01112344566668999999883  467788886555443    4455999999999999999999998532 


Q ss_pred             cccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCCCc-cCCCCCcHHHHHHHHHHHHHhcChHHH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDH-GSTFAGSPLVCNAAIAVLDKISNPAFL  368 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~~~~~~  368 (451)
                      .....  . ..|  .|++  +++|.+++ | ...|++++++++++.++.... ......+|+.++.++..|+.+. ..+.
T Consensus       190 ~~~~p--~-~~g--~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl~-~r~~  263 (389)
T PRK05968        190 VFQRP--I-TLG--VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTLP-LRMK  263 (389)
T ss_pred             hccCc--h-hcC--CcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcHH-HHHH
Confidence            11111  1 123  3555  56799986 4 667888888888877653211 1113456777777766665441 1111


Q ss_pred             HH---------HHhCCCCcceec-------------ccceeEEEEec--CChHHHHHHHHHCCceee---------ec--
Q 013008          369 AS---------KLARNPHVKDVR-------------GLGLIIGIEFD--VSATPVVDACRDSGLLVL---------TA--  413 (451)
Q Consensus       369 ~~---------~~~~~~~~~~v~-------------g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~---------~~--  413 (451)
                      ++         .++.+|.+..+.             +.|.++.|+++  ....+|++.|...++.+.         |.  
T Consensus       264 ~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~  343 (389)
T PRK05968        264 AHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPAEV  343 (389)
T ss_pred             HHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeCcc
Confidence            11         456677554443             44668888885  234556666644332211         21  


Q ss_pred             --------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          414 --------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       414 --------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                                    | ..+.+|+++.+-    +.+.+++-|+++|++.
T Consensus       344 ~~~~~~~~~~~~~~gi~~~liR~SvGlE----~~~dl~~dl~~al~~~  387 (389)
T PRK05968        344 VLQQKAQPNSAARFGVSPRSVRLHVGLE----GTEALWADLEQALAAA  387 (389)
T ss_pred             cccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHHh
Confidence                          0 025688876664    5556666777766654

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.71  E-value=1e-15  Score=154.24  Aligned_cols=164  Identities=23%  Similarity=0.240  Sum_probs=120.7

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +....++...+|+++|+++.+.+..++++||++|+..+++.+..           ++++||+.++.|++........   
T Consensus        52 y~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~-----------~Gd~Vl~~~~~Y~~t~~~~~~~---  117 (425)
T PRK06084         52 YTRIMNPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAE-----------AGDNIVSVAKLYGGTYNLLAHT---  117 (425)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhC-----------CCCEEEEeCCCcchHHHHHHHh---
Confidence            44556666889999999999988888999999999999987652           6889999999998644222111   


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                            .......+.+++.+|++++++++++ ++++|++|+++++.|.+.+    +++|.++|++||+++|+||++. .+
T Consensus       118 ------l~~~gi~v~~~d~~d~e~le~ai~~-~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~  185 (425)
T PRK06084        118 ------LPRIGIETRFAAHDDIAALEALIDE-RTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TP  185 (425)
T ss_pred             ------cccceeEEEEECCCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-cc
Confidence                  0011123455666799999999975 5788888988888887776    8999999999999999999995 22


Q ss_pred             cccccccccccCCCccee--eecccccC-Ccccccccc
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALV  328 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~  328 (451)
                      ...     .......|++  +++|.++| |.++|.+++
T Consensus       186 ~~~-----~p~~~gaDivv~S~tK~l~G~g~~~gG~v~  218 (425)
T PRK06084        186 VLC-----RPFEHGADIVVHSLTKYIGGHGTSIGGIVV  218 (425)
T ss_pred             ccC-----ChhhcCCCEEEECchhcccccccceeEEEE
Confidence            221     1123346666  67799986 666666554

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.71  E-value=1.7e-15  Score=150.34  Aligned_cols=270  Identities=20%  Similarity=0.173  Sum_probs=166.3

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..++++...+|+++++++. .+.+++++||++|+..++....           .++|+||+.+++|++.......... 
T Consensus        45 y~ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all-----------~~Gd~Vl~~~~~y~~~~~~~~~~l~-  111 (366)
T PRK07582         45 YGRASNPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALL-----------RPGDTVVVPADGYYQVRALAREYLA-  111 (366)
T ss_pred             eECCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhc-----------CCCCEEEEeCCCcHhHHHHHHHHHh-
Confidence            45566677889999999988 5677778899999999887543           1689999999999876543211000 


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL  292 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~  292 (451)
                              .....+.+++.++...  ...  .++++|++|..++++|.+.+    +++|.++|+++|+++|+||+|. .+
T Consensus       112 --------~~G~~v~~v~~~~~~~--~~~--~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~  175 (366)
T PRK07582        112 --------PLGVTVREAPTAGMAE--AAL--AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPL  175 (366)
T ss_pred             --------cCeEEEEEECCCChHH--Hhc--cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCcc
Confidence                    0112334455444322  222  35778888877777776665    9999999999999999999984 22


Q ss_pred             CcccccccccccCCCccee--eecccccC--Ccccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h
Q 013008          293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P  365 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~  365 (451)
                      +.  ..     ..+..|++  +++|.++|  |+++|++++ ++++.+.+...........+|+.+..+...|+.+..  +
T Consensus       176 ~~--~p-----~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl~~R~~  248 (366)
T PRK07582        176 GQ--RP-----LELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFA  248 (366)
T ss_pred             cc--Cc-----hhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccHHHHHH
Confidence            21  11     12235665  57799975  588999987 477777665322222334567777766665553211  1


Q ss_pred             HHH------HHHHhCCCCcceec------------------ccceeEEEEecCChHHHHHHHHHCCceeee---------
Q 013008          366 AFL------ASKLARNPHVKDVR------------------GLGLIIGIEFDVSATPVVDACRDSGLLVLT---------  412 (451)
Q Consensus       366 ~~~------~~~~~~~~~~~~v~------------------g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~---------  412 (451)
                      ...      .+.++.+|.+..|.                  +.|.++.|+++ ...+..+.+...+++...         
T Consensus       249 ~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-~~~~~~~~~~~l~~~~~~~s~G~~~sl  327 (366)
T PRK07582        249 RQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-DAAAAERFVAASRLVVAATSFGGVHTS  327 (366)
T ss_pred             HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC-CHHHHHHHHHhCCcceecccCCCccch
Confidence            111      11445566443332                  46888899885 344444444444554320         


Q ss_pred             ------cC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          413 ------AG---KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       413 ------~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                            .+   .++.+|+++.+..+++    +++.|+++|+
T Consensus       328 ~~~~~~~~~~~~~~liR~svGlE~~~d----li~dl~~al~  364 (366)
T PRK07582        328 ADRRARWGDAVPEGFVRLSCGIEDTDD----LVADLERALD  364 (366)
T ss_pred             hhhHHHcCCCCCCCeEEEEeccCCHHH----HHHHHHHHHh
Confidence                  01   1246899877765544    4555555554

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.71  E-value=2.5e-15  Score=150.21  Aligned_cols=196  Identities=17%  Similarity=0.163  Sum_probs=133.5

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++++++.+.+..+.++||++|+..+++.+.           .++|+||+.++.|.+.........  
T Consensus        55 Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all-----------~~Gd~Vl~~~~~y~~t~~~~~~~~--  121 (388)
T PRK07811         55 YARTGNPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVL-----------RPGDHIVIPNDAYGGTFRLIDKVF--  121 (388)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHh-----------CCCCEEEEcCCCchHHHHHHHHhC--
Confidence            3445556688999999999987777788899999999998765           268999999999965432211111  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++..|++++++.+.+ ++++|++|.++++.|...+    +++|.++|++||+++|+||+|... 
T Consensus       122 -------~~~gi~~~~~d~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~-  188 (388)
T PRK07811        122 -------TRWGVEYTPVDLSDLDAVRAAITP-RTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASP-  188 (388)
T ss_pred             -------cCCCeEEEEeCCCCHHHHHHhcCc-CCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCcc-
Confidence                   011123445566689999999975 5788888877777776655    999999999999999999998532 


Q ss_pred             cccccccccccCCCccee--eecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLD  360 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~  360 (451)
                      ..+..     .+...|++  +++|.++| | ...|+++++ +++.+.+...........+|+.++.++..|+
T Consensus       189 ~~~~p-----~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~  255 (388)
T PRK07811        189 YLQQP-----LALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK  255 (388)
T ss_pred             ccCCc-----hhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC
Confidence            22221     12235655  56799986 4 567888764 6776655432222223345666655555554

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.70  E-value=6.4e-15  Score=150.58  Aligned_cols=268  Identities=19%  Similarity=0.162  Sum_probs=157.1

Q ss_pred             HHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc----cCCCCc
Q 013008          143 IELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL----TSKEHY  216 (451)
Q Consensus       143 ~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~----~~~~~~  216 (451)
                      .++.++++++++  .+.+.+++||+++++.++.+.+. .         ++++|++.++.|+.. ...+..    .|....
T Consensus       115 ~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~-~---------~g~~Vlv~~~~~~~~-~~~~~~~~~~~G~~~~  183 (447)
T PRK00451        115 FEYQTMICELTGMDVANASMYDGATALAEAALMAVRI-T---------KRKKVLVSGAVHPEY-REVLKTYLKGQGIEVV  183 (447)
T ss_pred             HHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh-c---------CCCEEEEeCccCHHH-HHHHHHHHHhCCcEEE
Confidence            344466788887  45789999999988887765432 1         478899988765433 333221    111111


Q ss_pred             CCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEE--eccccCCCc
Q 013008          217 RSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF--DEVQCGLGR  294 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~--DEv~tg~gr  294 (451)
                      .   .+..++ .    -|+++|++.+.+ ++++|++... ++.|.+.+    +++|.++|+++|+++|+  |.+..|+  
T Consensus       184 ~---v~~~~~-~----~d~~~l~~~i~~-~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~--  247 (447)
T PRK00451        184 E---VPYEDG-V----TDLEALEAAVDD-DTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL--  247 (447)
T ss_pred             E---ecCCCC-C----CCHHHHHHhcCC-CeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--
Confidence            1   121121 1    289999999975 5677766654 55677665    99999999999999998  5543221  


Q ss_pred             ccccccccccCCCcceee-----eccccc-CCcccccccccHHHHhhccCC----------------------------C
Q 013008          295 TGYLWAHEHYGIFPDIMT-----LAKPLA-GGLPIGAALVTEKVASAINYG----------------------------D  340 (451)
Q Consensus       295 ~G~~~~~~~~~~~pdi~t-----~sK~lg-~G~~iG~v~~~~~i~~~~~~~----------------------------~  340 (451)
                      ..   ...  ....|+++     +||.+. +|+++|++.+++++++.+.+.                            .
T Consensus       248 ~~---~~~--~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (447)
T PRK00451        248 LK---PPG--EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREK  322 (447)
T ss_pred             CC---Ccc--cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccc
Confidence            11   111  23466664     456654 468899999999888874211                            0


Q ss_pred             ccCCCCCcHHHH-HHHHHHHHHhcChHHHH---H-------H---HhCCCCcceecccceeEE--EEecCChHHHHHHHH
Q 013008          341 HGSTFAGSPLVC-NAAIAVLDKISNPAFLA---S-------K---LARNPHVKDVRGLGLIIG--IEFDVSATPVVDACR  404 (451)
Q Consensus       341 ~~~t~~~~~~~~-aaa~aal~~~~~~~~~~---~-------~---~~~~~~~~~v~g~G~~~~--~~~~~~~~~~~~~l~  404 (451)
                      ...+++.+...+ .++.++++.+.++.+.+   +       +   ++.++.+... ....+..  +.++....+++++|.
T Consensus       323 ~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~v~~~~~~~~~~~~L~  401 (447)
T PRK00451        323 ATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELF-DGPFFNEFVVRLPKPAEEVNEALL  401 (447)
T ss_pred             ccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec-CCCeEEEEEEecCCCHHHHHHHHH
Confidence            111122222122 23333444333322211   1       2   2333333222 2222222  343335688999999


Q ss_pred             HCCceee----ecC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          405 DSGLLVL----TAG--KGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       405 ~~Gv~~~----~~~--~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ++|+...    +..  ..+.+|++++..+|+++++++++.|++++
T Consensus       402 ~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        402 EKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             hcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            9987642    111  12579999988899999999999998764

>PLN02509 cystathionine beta-lyase

Probab=99.69  E-value=1.5e-15  Score=153.62  Aligned_cols=197  Identities=19%  Similarity=0.190  Sum_probs=132.4

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      |....++...+|+++++++.+.+.+++++||+.|+..++.++.            ++|+||+.++.|++.........  
T Consensus       127 Y~r~gnpt~~aLE~~lA~leg~e~ai~~~SG~aAi~~il~ll~------------~GD~VI~~~~~y~~t~~ll~~~l--  192 (464)
T PLN02509        127 YTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLIK------------NGEEIVAGDDVYGGSDRLLSQVV--  192 (464)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHhC------------CCCEEEEcCCchhhHHHHHHHHH--
Confidence            3444566799999999999998888999999988865554322            68999999999976532211100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++.+|++++++.+.+ ++++|++|.+.++.|.+.+    +++|.++|++||+++|+||+|. .+
T Consensus       193 -------~~~G~~v~~vd~~d~e~l~~ai~~-~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a-~~  259 (464)
T PLN02509        193 -------PRSGVVVKRVNTTNLDEVAAAIGP-QTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIM-SP  259 (464)
T ss_pred             -------HHCCeEEEEeCCCCHHHHHHhCCc-CCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcc-cc
Confidence                   000122345566789999999965 5788888888888887655    9999999999999999999984 22


Q ss_pred             cccccccccccCCCccee--eecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      ..+..     .+...|++  +++|.++| | .-.|+++++ +.+.+.+...........+|..++.++..|+.+
T Consensus       260 ~~~~p-----l~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL  328 (464)
T PLN02509        260 VLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM  328 (464)
T ss_pred             ccCCh-----hhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhH
Confidence            22321     22346766  56799986 4 456777654 444443321111112234788888888777765

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.69  E-value=5.4e-15  Score=146.68  Aligned_cols=197  Identities=13%  Similarity=0.057  Sum_probs=133.7

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .+....++....|+++++...+.+..++++||++|+..++....           +++|+||+.++.|+++........ 
T Consensus        57 ~YsR~gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all-----------~~GD~Vlv~~~~Y~~~~~l~~~~l-  124 (395)
T PRK05967         57 TYGTRGTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFL-----------SPGDHALIVDSVYYPTRHFCDTML-  124 (395)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhc-----------CCCCEEEEccCCcHHHHHHHHHHH-
Confidence            34556777789999999988876666777789999999987654           279999999999987653221111 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                              ......+.+++..+.+.+++++++ ++++|++|.+.++.+.+.+    +++|+++|+++|+++|+|+++...
T Consensus       125 --------~~~Gi~v~~vd~~~~e~l~~al~~-~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p  191 (395)
T PRK05967        125 --------KRLGVEVEYYDPEIGAGIAKLMRP-NTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATP  191 (395)
T ss_pred             --------HhcCeEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCc
Confidence                    011123455555567889999975 5789999976666555554    999999999999999999999642


Q ss_pred             CcccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHH
Q 013008          293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD  360 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~  360 (451)
                      .      .+.-.....|++  +.+|.++| | .-.|+++.++++.+.+...........+|..+...+..|+
T Consensus       192 ~------~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~  257 (395)
T PRK05967        192 L------YFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLR  257 (395)
T ss_pred             e------ecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcc
Confidence            1      122222346665  57799987 4 7778887787766655321111122356776655554444

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.69  E-value=1.4e-14  Score=144.08  Aligned_cols=293  Identities=14%  Similarity=0.140  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      ++..+++.+.+.....   ....+...++++++++.++.+.+++++||++|+..+++++.  .        .++|+||+.
T Consensus        11 ~~e~~a~~~~~~~~~~---~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~--~--------~pGd~Viv~   77 (376)
T TIGR02379        11 GQELEYIAEAISEGKL---SGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLD--I--------QPGDEVIMP   77 (376)
T ss_pred             HHHHHHHHHHHHcCCc---cCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEEC
Confidence            4557788887765321   11234578999999999999999999999999999887541  1        268999999


Q ss_pred             cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC  276 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~  276 (451)
                      +++|.+........+....+    .+..++..   .-|++++++++.+ ++++|+  |++. .|...+    +++|.++|
T Consensus        78 ~~t~~~~~~~~~~~G~~~v~----vd~d~~~~---~~d~~~le~~i~~-~tk~Ii--p~~~-~G~~~d----~~~I~~la  142 (376)
T TIGR02379        78 SYTFVSTANAFVLRGAKIVF----VDIRPDTM---NIDETLIESAITH-RTKAIV--PVHY-AGVACD----MDTIMALA  142 (376)
T ss_pred             CCCcHHHHHHHHHcCCEEEE----EecCCCcC---CCCHHHHHHhcCc-CceEEE--EeCC-CCCccC----HHHHHHHH
Confidence            99997764333322221111    11111110   0278999999875 566665  4443 354455    88999999


Q ss_pred             HHhCCEEEEeccccCCCc--ccccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccCCC---------
Q 013008          277 DDAGALLVFDEVQCGLGR--TGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYGD---------  340 (451)
Q Consensus       277 ~~~g~llI~DEv~tg~gr--~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~~---------  340 (451)
                      ++||+++|.|++|+ +|.  .|.     ..+..-|+.+||    |.++.|.+.|+++.+ +++.+.++...         
T Consensus       143 ~~~~i~vIeDaa~~-~g~~~~~~-----~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~  216 (376)
T TIGR02379       143 NKHQLFVIEDAAQG-VMSTYKGR-----ALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQF  216 (376)
T ss_pred             HHCCCEEEEECccc-cCCccCCc-----ccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccc
Confidence            99999999999996 432  121     223334788888    999877788988775 77777764311         


Q ss_pred             ------------ccCCCCCcHHHHHHHHHHHHHhcChHHH--------HHHHhCCC--C-cc--eec-ccc---eeEEEE
Q 013008          341 ------------HGSTFAGSPLVCNAAIAVLDKISNPAFL--------ASKLARNP--H-VK--DVR-GLG---LIIGIE  391 (451)
Q Consensus       341 ------------~~~t~~~~~~~~aaa~aal~~~~~~~~~--------~~~~~~~~--~-~~--~v~-g~G---~~~~~~  391 (451)
                                  .+..+..+.+.++.+++.|+.+++..-.        .+.+++++  . +.  .+. +..   .++.+.
T Consensus       217 ~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~  296 (376)
T TIGR02379       217 FRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIK  296 (376)
T ss_pred             cccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEE
Confidence                        1122233456666666667765431111        11222222  1 10  011 111   123344


Q ss_pred             ecC--ChHHHHHHHHHCCceeeec----CC---------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          392 FDV--SATPVVDACRDSGLLVLTA----GK---------------------GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       392 ~~~--~~~~~~~~l~~~Gv~~~~~----~~---------------------~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ++.  +..++.+.|.++||...+.    ..                     ...+.+-.....+++|++++++.|++++
T Consensus       297 ~~~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       297 LKDEDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             ECCcCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            432  4678999999999976521    00                     1134444445689999999999998764

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.68  E-value=3.5e-15  Score=148.57  Aligned_cols=276  Identities=18%  Similarity=0.208  Sum_probs=170.2

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +....++...+|+++++++++.+.+++++||+.|+..++.++.            ++|+||+.++.|++.........  
T Consensus        41 Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~ll~------------~Gd~Vl~~~~~y~~~~~~~~~~~--  106 (378)
T TIGR01329        41 YTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDVITRLLN------------NGDEIIAGDDLYGGTDRLLTQVV--  106 (378)
T ss_pred             cCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhC------------CCCEEEEcCCCchHHHHHHHHHH--
Confidence            3444566688999999999998888999999999887665321            68999999998865432111000  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++..|++++++++++ ++++|++|.+.++.|.+.+    +++|.++|++||+++|+|+++.. +
T Consensus       107 -------~~~G~~v~~vd~~d~~~le~~i~~-~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~-~  173 (378)
T TIGR01329       107 -------PRSGVVVVHVDTTDLDKVKAALGP-KTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMS-P  173 (378)
T ss_pred             -------HHcCcEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc-c
Confidence                   011133456666789999999974 6789999988888887776    99999999999999999999832 1


Q ss_pred             cccccccccccCCCccee--eecccccC--Ccccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA  366 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~  366 (451)
                      .....  .   +...|++  +.+|.++|  +...|++++ ++++.+.+...........+|..++.++..++.+..  +.
T Consensus       174 ~~~~~--l---~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl~~R~e~  248 (378)
T TIGR01329       174 LLCNP--L---ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTLAIRIEK  248 (378)
T ss_pred             ccCCh--h---hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCHHHHHHH
Confidence            11111  1   2235666  55799976  366888877 456656554322212233456655443333322110  00


Q ss_pred             ------HHHHHHhCCCCcce------------------ecccceeEEEEecC-C-hHHHHHHHHHCCceeeecC------
Q 013008          367 ------FLASKLARNPHVKD------------------VRGLGLIIGIEFDV-S-ATPVVDACRDSGLLVLTAG------  414 (451)
Q Consensus       367 ------~~~~~~~~~~~~~~------------------v~g~G~~~~~~~~~-~-~~~~~~~l~~~Gv~~~~~~------  414 (451)
                            .+.+.++++|.+..                  ..+.|.++.|++.. . ..+|...|...++.+.-++      
T Consensus       249 ~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~~sl~~  328 (378)
T TIGR01329       249 QQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVNSLIS  328 (378)
T ss_pred             HHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCCCceee
Confidence                  00113334442221                  23567788888831 1 4466666643333332211      


Q ss_pred             --------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          415 --------------------KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       415 --------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                                          ..+.+|+++.+    |+.+.+++-|+++|++
T Consensus       329 ~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  375 (378)
T TIGR01329       329 MPCFMSHASIPAEVREERGLPEDLVRLSVGI----EDVDDLISDLDIAFVT  375 (378)
T ss_pred             CCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence                                12467886554    5677778888888764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.68  E-value=5.1e-15  Score=146.42  Aligned_cols=278  Identities=22%  Similarity=0.229  Sum_probs=171.8

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+....++....|+++|+++.+.+.++.++||..|+..++..+.+           ++++||+.+..|++.........
T Consensus        47 ~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~-----------~Gd~iv~~~~~Y~~t~~~~~~~l  115 (386)
T PF01053_consen   47 YIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLK-----------PGDHIVASDDLYGGTYRLLEELL  115 (386)
T ss_dssp             CSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS------------TTBEEEEESSSSHHHHHHHHHCH
T ss_pred             cceeccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcc-----------cCCceEecCCccCcchhhhhhhh
Confidence            4456677888999999999999999999999999999999886652           68999999999987643322111


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC-CEEEEecccc
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG-ALLVFDEVQC  290 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g-~llI~DEv~t  290 (451)
                               ......+.+++..|++++++++++ ++++|++|++.++...++.    +++|+++|+++| +++|+|....
T Consensus       116 ---------~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~a  181 (386)
T PF01053_consen  116 ---------PRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFA  181 (386)
T ss_dssp             ---------HHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTT
T ss_pred             ---------cccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeecccc
Confidence                     112244567787899999999976 8999999998777766666    999999999998 9999999974


Q ss_pred             CCCcccccccccccCCCccee--eecccccC-C-ccccccccc--HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC
Q 013008          291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT--EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN  364 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~--~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~  364 (451)
                      ..      ..+.-+....|++  +.+|.++| | .-.|+++++  +++++.++..........+|..+...+..|+.+.-
T Consensus       182 tp------~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl~~  255 (386)
T PF01053_consen  182 TP------YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTLPL  255 (386)
T ss_dssp             HT------TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHH
T ss_pred             ce------eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcHHH
Confidence            22      1222233336766  56799986 5 667888765  47777654221111122355555554444432210


Q ss_pred             --hH------HHHHHHhCCCCccee------------------cccceeEEEEecCC---hHHHHHHHHH--CCce----
Q 013008          365 --PA------FLASKLARNPHVKDV------------------RGLGLIIGIEFDVS---ATPVVDACRD--SGLL----  409 (451)
Q Consensus       365 --~~------~~~~~~~~~~~~~~v------------------~g~G~~~~~~~~~~---~~~~~~~l~~--~Gv~----  409 (451)
                        +.      .+.+.++.+|.+..|                  .+.|.++.|++...   ..+|.+.|.-  .|.-    
T Consensus       256 R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~  335 (386)
T PF01053_consen  256 RMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGV  335 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSS
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCc
Confidence              00      011155667755543                  35567899999533   2344444421  1111    


Q ss_pred             ---e-eec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          410 ---V-LTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       410 ---~-~~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                         + .|.               | ..+.+|+++.+    |+.+.+++.|+++|+
T Consensus       336 ~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  336 ESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQALE  386 (386)
T ss_dssp             S-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred             ccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhcC
Confidence               1 121               0 12568886554    667778888888774

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.67  E-value=1.1e-14  Score=145.61  Aligned_cols=190  Identities=16%  Similarity=0.123  Sum_probs=128.0

Q ss_pred             CCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       135 ~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      .....+...+|+++++++.+.+..+.++||+.|+..++.++.            ++|+||+.++.|++.........   
T Consensus        49 ~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~~l~------------~Gd~Vlv~~~~y~~~~~~~~~~~---  113 (390)
T PRK08064         49 SRSGNPTREALEDIIAELEGGTKGFAFASGMAAISTAFLLLS------------KGDHVLISEDVYGGTYRMITEVL---  113 (390)
T ss_pred             cCCCChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHHHhC------------CCCEEEEccCccchHHHHHHHHH---
Confidence            444566688999999999986677788999999988886322            58999999999976543221110   


Q ss_pred             CcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008          215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR  294 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  294 (451)
                            ......+.+++..|++++++.+.+ ++++|++|.++++.|.+.+    +++|.++|+++|+++|+||+|..+ .
T Consensus       114 ------~~~G~~v~~v~~~d~~~l~~~l~~-~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~  181 (390)
T PRK08064        114 ------SRFGIEHTFVDMTNLEEVAQNIKP-NTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-L  181 (390)
T ss_pred             ------HHcCCEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-c
Confidence                  011233556666789999999865 5688888877777787766    999999999999999999998543 1


Q ss_pred             ccccccccccCCCccee--eecccccC--Ccccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHH
Q 013008          295 TGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAI  356 (451)
Q Consensus       295 ~G~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~  356 (451)
                      ....  . .+|  .|++  +++|.++|  |.-.|++++ ++++++.++..........+|..+..+.
T Consensus       182 ~~~~--~-~~g--~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~  243 (390)
T PRK08064        182 LQKP--L-DLG--ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVL  243 (390)
T ss_pred             ccCc--h-hhC--CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            1111  1 223  5665  56799875  344566655 4678777754333233334555544433

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.67  E-value=2.3e-15  Score=149.86  Aligned_cols=172  Identities=15%  Similarity=0.100  Sum_probs=121.2

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++++++.+.+..++++||+.|+.+++.++.            ++++||+.++.|++.......... 
T Consensus        44 y~r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~~l~------------pGd~Vi~~~~~y~~t~~~~~~~~~-  110 (380)
T PRK06176         44 YSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSLFQ------------SGDHVLLGDDVYGGTFRLFDKVLV-  110 (380)
T ss_pred             ccCCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHcC------------CCCEEEEcCCChhHHHHHHHHHHH-
Confidence            4556677789999999999998888889999999987664322            689999999999765422211110 


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                              .....+.+++..|++++++++++ ++++|++|.+.++.|.+.+    +++|.++|++||+++|+|++++.. 
T Consensus       111 --------~~gi~v~~vd~~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-  176 (380)
T PRK06176        111 --------KNGLSCTIIDTSDLSQIKKAIKP-NTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-  176 (380)
T ss_pred             --------hcCeEEEEcCCCCHHHHHHhcCc-CceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-
Confidence                    11122445555689999999875 6788888877777777666    999999999999999999999642 


Q ss_pred             cccccccccccCCCcceee--ecccccC-C-ccccccccc-HHHHhhcc
Q 013008          294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAIN  337 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~  337 (451)
                      ..+..     .+...|+++  ++|.++| | .-.|+++++ +++.+.++
T Consensus       177 ~~~~p-----~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~  220 (380)
T PRK06176        177 YYQNP-----LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA  220 (380)
T ss_pred             ccCCc-----cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH
Confidence            22221     133467765  4599975 4 455667764 56666554

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.67  E-value=3.5e-14  Score=144.70  Aligned_cols=303  Identities=15%  Similarity=0.117  Sum_probs=174.7

Q ss_pred             CCCHHHHHHHHHHH-hhcccccC---C-CCCHHHHHHHH----HHhhccC-CCeEE-e---cCCHHHHHHHHHHHHHHHh
Q 013008          114 HGDADWIKAVVDQA-NVLTHVSN---M-YYSIPQIELAK----RLVACSF-ADRVF-F---SNTGTEANEAAIKFARKFQ  179 (451)
Q Consensus       114 ~~~p~v~~a~~~~~-~~~~~~~~---~-~~~~~~~~l~~----~l~~~~~-~e~v~-~---~~sG~eA~~~al~~a~~~~  179 (451)
                      +..|.+++|+...+ .++..++.   . ..+....++++    +..+.++ .+..+ +   .+||+.||.+++..+..  
T Consensus        45 ~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~--  122 (475)
T PLN03226         45 FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQ--  122 (475)
T ss_pred             cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCC--
Confidence            36789999999888 55544321   1 12344455543    2334455 33222 2   38999999999997752  


Q ss_pred             hhcCCCCCCCCceEEEEcCCc-----cCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC------CHHHHHHhcCCCCeE
Q 013008          180 RHSNPDSKEPATEFVSFTNSF-----HGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG------NIEATRKLIQPGKTA  248 (451)
Q Consensus       180 ~~~~~~~~~~~~~ii~~~~~y-----hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~a  248 (451)
                               ++|+|+..+..-     |++......++....+        -.+..+.+|      |+++|++++...+++
T Consensus       123 ---------pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~--------~~~~~y~~~~~~g~iD~d~Le~~l~~~~pk  185 (475)
T PLN03226        123 ---------PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIY--------FESMPYRLDESTGLIDYDKLEKKAMLFRPK  185 (475)
T ss_pred             ---------CCCEEEECCCCcCcchhhhhhhcccccccceEE--------EEeeeeeecCCCCCcCHHHHHHHHhhcCCe
Confidence                     688898865422     3332221111111100        000112234      899999998744555


Q ss_pred             EEEE-ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCccccc
Q 013008          249 AVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGA  325 (451)
Q Consensus       249 avi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~  325 (451)
                      .|++ ++++++.+   +    +++|+++|++||++|++|++|. +|..+.......++ ..|++  |++|+|.|. +.|+
T Consensus       186 lIv~~~S~~s~~~---D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p~~-~~Div~~t~hK~L~GP-~Gg~  255 (475)
T PLN03226        186 LIIAGASAYPRDW---D----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAASPFE-YCDVVTTTTHKSLRGP-RGGM  255 (475)
T ss_pred             EEEEecCcCCCcc---C----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCCCCCC-CCeEEEecCcccccCC-CceE
Confidence            5665 66655443   3    7899999999999999999994 44333221111122 36766  567999642 2377


Q ss_pred             ccccHHHH-----------hh---ccCC-CccCCCCCcHHHHHHHHHHHHHhcChHH---HHH-------HHhCC--CCc
Q 013008          326 ALVTEKVA-----------SA---INYG-DHGSTFAGSPLVCNAAIAVLDKISNPAF---LAS-------KLARN--PHV  378 (451)
Q Consensus       326 v~~~~~i~-----------~~---~~~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~-------~~~~~--~~~  378 (451)
                      +++++++.           +.   +... ....+-+.++...++..++|+.+..+++   .++       +.+.+  ..+
T Consensus       256 I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~  335 (475)
T PLN03226        256 IFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGY  335 (475)
T ss_pred             EEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            77776543           22   2211 1112223456667777788988765433   332       22211  122


Q ss_pred             ceecc--cceeEEEEec---CChHHHHHHHHHCCceeeecC--------CCCEEEE----eCCCCCCHHHHHHHHHHHHH
Q 013008          379 KDVRG--LGLIIGIEFD---VSATPVVDACRDSGLLVLTAG--------KGNVVRL----VPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       379 ~~v~g--~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~--------~~~~iri----~~~~~~t~e~i~~~l~~l~~  441 (451)
                      .-+.+  ...+..+++.   ....++.+.|.+.||++....        .+..+|+    .....++++|++++.+.|.+
T Consensus       336 ~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~  415 (475)
T PLN03226        336 KLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHR  415 (475)
T ss_pred             EEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHH
Confidence            21211  1345566662   345678888888899886431        1245777    44678899999999999999


Q ss_pred             HHHH
Q 013008          442 TLPV  445 (451)
Q Consensus       442 ~l~~  445 (451)
                      +++.
T Consensus       416 ~~~~  419 (475)
T PLN03226        416 AVTI  419 (475)
T ss_pred             HHHH
Confidence            9873

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.67  E-value=9.3e-15  Score=144.87  Aligned_cols=280  Identities=16%  Similarity=0.137  Sum_probs=181.0

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.|....++....|+++|+++.+.+.+++++||+.|+.+++..+.           .++|+||+.+..|++.........
T Consensus        54 ~~YsR~~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll-----------~~GD~Vv~~~~~Yg~t~~l~~~~l  122 (395)
T PRK08114         54 LFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFV-----------EQGDHVLMTGTAYEPTQDFCSKIL  122 (395)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHc-----------CCCCEEEEeCCCcHHHHHHHHHHH
Confidence            345666788899999999999999999999999999999888654           168999999888876653321110


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC--CEEEEeccc
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEVQ  289 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~  289 (451)
                               ......+.+++..|.+.+++++++ ++++|++|.+.++.|.+.+    +++|+++|+++|  +++|+|.++
T Consensus       123 ---------~~~Gi~v~~vd~~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~  188 (395)
T PRK08114        123 ---------SKLGVTTTWFDPLIGADIAKLIQP-NTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTW  188 (395)
T ss_pred             ---------HhcCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCC
Confidence                     111234566777789999999975 6899999999999888888    999999999985  999999998


Q ss_pred             cCCCcccccccccccCCCcceeee--cccccC-C-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-C
Q 013008          290 CGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-N  364 (451)
Q Consensus       290 tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~  364 (451)
                      +.    +.  .+.-..+..|+++.  .|.++| | .-.|.++.++++.+.+........-..+|..+...+..|+.+. +
T Consensus       189 a~----p~--~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~lR  262 (395)
T PRK08114        189 AA----GV--LFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGVR  262 (395)
T ss_pred             cc----cc--ccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcHHHH
Confidence            52    21  23333445787755  599987 4 7778777787766655421111112346666665544443221 0


Q ss_pred             -hH------HHHHHHhCCCCccee------------------cccceeEEEEecC--ChH---HHHHHHH--HC-----C
Q 013008          365 -PA------FLASKLARNPHVKDV------------------RGLGLIIGIEFDV--SAT---PVVDACR--DS-----G  407 (451)
Q Consensus       365 -~~------~~~~~~~~~~~~~~v------------------~g~G~~~~~~~~~--~~~---~~~~~l~--~~-----G  407 (451)
                       +.      .+.++++.+|.+..|                  .+.|.++.|+++.  ...   +|.+.|.  ..     |
T Consensus       263 ~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg  342 (395)
T PRK08114        263 LRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGG  342 (395)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccCC
Confidence             11      111155666644322                  3568899999853  122   3333321  11     1


Q ss_pred             c--eee---e-----------cC-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          408 L--LVL---T-----------AG-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       408 v--~~~---~-----------~~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +  ++.   |           .+ .++.+|+++.+    |+.+.+++-|+++|+.+
T Consensus       343 ~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        343 FESLILANQPEEIAAIRPAGEVDFTGTLIRLHIGL----EDVDDLIADLAAGFARI  394 (395)
T ss_pred             ccceeccCCchhhhccCChhHhcCCCCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            1  111   0           00 13568886554    56777788888887653

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.66  E-value=6.2e-14  Score=143.90  Aligned_cols=316  Identities=16%  Similarity=0.116  Sum_probs=179.7

Q ss_pred             CCCHHHHHHHHHHHhhcccccCCC--------CCHHHHHHHHHHhhccCCCeEEec-CCHHHHHHHHHHHHHHHhhhcCC
Q 013008          114 HGDADWIKAVVDQANVLTHVSNMY--------YSIPQIELAKRLVACSFADRVFFS-NTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~~~~e~v~~~-~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      |.+|.+.+++.+......  ++.|        ..+...++.++++++++.+.+.+. ++|+.+...++.+++.+....+.
T Consensus        81 ~~~p~i~~~~~~~~~~~~--~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd  158 (481)
T PRK04366         81 KYNPKINEKVARLPGFAE--LHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGD  158 (481)
T ss_pred             CCCHHHHHHHHhCcchhc--CCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCc
Confidence            467888888877522211  1222        112366788888888886654444 56777766655555443221110


Q ss_pred             CCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCcccc
Q 013008          185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA  264 (451)
Q Consensus       185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~  264 (451)
                         .++++||+.++.|+.+. ......|.....   .+...+.    ..|+++|++++.+ ++++|++...+ +.|.+  
T Consensus       159 ---~~~~~Vlv~~~~hp~~~-~~~~~~G~~vv~---v~~~~~~----~~D~e~L~~~i~~-~t~~V~v~~Pn-~tG~~--  223 (481)
T PRK04366        159 ---TKRTEVIVPDSAHGTNP-ASAAMAGFKVVE---IPSNEDG----LVDLEALKAAVGE-DTAALMLTNPN-TLGLF--  223 (481)
T ss_pred             ---CCCCEEEEcCCccHhHH-HHHHHcCCEEEE---eecCCCC----CcCHHHHHhhccc-CCeEEEEeCCC-Ccccc--
Confidence               02458999988765544 333332221111   1111111    1289999999975 45555554333 45543  


Q ss_pred             CHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccC-----CcccccccccHHHHhhcc
Q 013008          265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG-----GLPIGAALVTEKVASAIN  337 (451)
Q Consensus       265 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~-----G~~iG~v~~~~~i~~~~~  337 (451)
                       ...+++|.++|+++|+++|+|+++. .+..|.. ....+  ..|++++  -|.|++     |-.+|++.+++++.+.+.
T Consensus       224 -~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~~~--GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp  298 (481)
T PRK04366        224 -ERNILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPGDM--GFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLP  298 (481)
T ss_pred             -chHHHHHHHHHHHcCCEEEEEecCh-hhhcccC-Ccccc--CCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCC
Confidence             2239999999999999999999984 2222321 12223  3687765  388862     345677778887776653


Q ss_pred             CCC-------------------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecccc-ee
Q 013008          338 YGD-------------------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRGLG-LI  387 (451)
Q Consensus       338 ~~~-------------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g~G-~~  387 (451)
                      ...                   ..-.++++.+.+.++...+..+..+++.+.          +.+++..+..+.-.+ .+
T Consensus       299 ~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~~~~~~~  378 (481)
T PRK04366        299 VPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDIYDLPYDRPCM  378 (481)
T ss_pred             CCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCcccCCCCee
Confidence            110                   011123344555555555555443433221          122211100111011 11


Q ss_pred             --EEEEe------cCChHHHHHHHHHCCceeeecC----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 013008          388 --IGIEF------DVSATPVVDACRDSGLLVLTAG----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNSN  451 (451)
Q Consensus       388 --~~~~~------~~~~~~~~~~l~~~Gv~~~~~~----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~~  451 (451)
                        +.+.+      +....++.++|.++|+.+....    ..+.+|+++...+|++|||++++.|.++.++++++|+
T Consensus       379 ~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~~~~  454 (481)
T PRK04366        379 HEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKENPE  454 (481)
T ss_pred             EEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHhCcH
Confidence              12221      1356789999999999875221    1357999999999999999999999999999887764

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.65  E-value=2.2e-14  Score=144.93  Aligned_cols=162  Identities=20%  Similarity=0.263  Sum_probs=118.6

Q ss_pred             CCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       135 ~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      ....++...+|++++++..+.+.+++++||++|+.++++++..           ++++||+..+.|++........    
T Consensus        58 ~r~~~p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all~-----------pGd~VIv~~~~y~~t~~~~~~~----  122 (427)
T PRK05994         58 TRITNPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQ-----------PGDEFIAARKLYGGSINQFGHA----  122 (427)
T ss_pred             ECCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC-----------CCCEEEEecCcchhHHHHHHHH----
Confidence            4445566789999999999988899999999999999987652           6899999999998753221100    


Q ss_pred             CcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008          215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR  294 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  294 (451)
                           .......+.+++.+|++++++++.+ ++++|++|.+.++.|.+.+    +++|.++|++||+++|+|++++. +.
T Consensus       123 -----~~~~G~~v~~vd~~d~~~l~~ai~~-~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~-~~  191 (427)
T PRK05994        123 -----FKSFGWQVRWADADDPASFERAITP-RTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS-PY  191 (427)
T ss_pred             -----HHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccc-cc
Confidence                 0011233456666789999999975 6788999988888887776    99999999999999999999852 11


Q ss_pred             ccccccccccCCCcceee--ecccccC-Cccccccc
Q 013008          295 TGYLWAHEHYGIFPDIMT--LAKPLAG-GLPIGAAL  327 (451)
Q Consensus       295 ~G~~~~~~~~~~~pdi~t--~sK~lg~-G~~iG~v~  327 (451)
                           .+......+|+++  ++|.++| |-.+|.++
T Consensus       192 -----~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v  222 (427)
T PRK05994        192 -----LIRPIEHGADIVVHSLTKFLGGHGNSMGGII  222 (427)
T ss_pred             -----cCCccccCCcEEEEcCccccCCCCCcEEEEE
Confidence                 1222345678775  6799986 43444433

>PRK05939 hypothetical protein; Provisional

Probab=99.65  E-value=3.2e-14  Score=142.26  Aligned_cols=166  Identities=20%  Similarity=0.188  Sum_probs=120.4

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+....++...+|+++|+++.+.+..+.++||+.|+..++..+.           .++|+||+.++.|++.......+.
T Consensus        39 ~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all-----------~~Gd~Vv~~~~~y~~t~~~~~~l~  107 (397)
T PRK05939         39 FTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLL-----------RAGDHLVSSQFLFGNTNSLFGTLR  107 (397)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHc-----------CCCCEEEECCCccccHHHHHHHHH
Confidence            334555677789999999999998778888899999999998654           168999999988865432111110


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                                .....+.+++..|++++++++.+ ++++|++|.+.++.|.+.+    +++|.++|++||+++|+|++|..
T Consensus       108 ----------~~G~~v~~v~~~d~e~l~~~l~~-~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~  172 (397)
T PRK05939        108 ----------GLGVEVTMVDATDVQNVAAAIRP-NTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTS  172 (397)
T ss_pred             ----------hcCCEEEEECCCCHHHHHHhCCC-CCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCccc
Confidence                      11133556666799999999965 6788999988888887665    99999999999999999999842


Q ss_pred             CCcccccccccccCCCccee--eecccccC-Cccccccccc
Q 013008          292 LGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVT  329 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~  329 (451)
                      ..      .+.......|++  +++|.++| |..+|+++..
T Consensus       173 ~~------~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~  207 (397)
T PRK05939        173 PW------LFRPKDVGASLVINSLSKYIAGHGNALGGAVTD  207 (397)
T ss_pred             cc------ccCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence            11      111112235554  67899997 7777776653

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.65  E-value=2.2e-14  Score=144.77  Aligned_cols=164  Identities=20%  Similarity=0.164  Sum_probs=118.9

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +....++....|++.|+++.+.+..++++||+.|+..++..+.           .++|+||+.++.|++.........  
T Consensus        58 y~r~~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll-----------~~GD~Vlv~~~~y~~t~~~~~~~~--  124 (431)
T PRK08248         58 YTRIMNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIA-----------SAGDEIVSSSSLYGGTYNLFAHTL--  124 (431)
T ss_pred             eECCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEccCchhhHHHHHHHHH--
Confidence            3445566688999999999998899999999999999998654           168999999999876542221110  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++..|++++++++++ ++++|+++.+.++.|.+.+    +++|.++|++||+++|+|+++.. +
T Consensus       125 -------~~~Gv~v~~vd~~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a~-~  191 (431)
T PRK08248        125 -------PKLGITVKFVDPSDPENFEAAITD-KTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFAS-P  191 (431)
T ss_pred             -------HhCCEEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCCc-c
Confidence                   011234556676799999999975 5778888877777787776    89999999999999999999852 1


Q ss_pred             cccccccccccCCCccee--eecccccC-Ccccccccc
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALV  328 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~  328 (451)
                      ..     ........|++  +++|.+++ |.++|++++
T Consensus       192 ~~-----~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~  224 (431)
T PRK08248        192 YL-----LRPIEHGADIVVHSATKFIGGHGTSIGGVIV  224 (431)
T ss_pred             cc-----CChhHcCCCEEEEcCccccCCCCCceEEEEE
Confidence            11     11112346666  56799986 667766654

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.65  E-value=8.6e-14  Score=126.86  Aligned_cols=288  Identities=17%  Similarity=0.153  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008          140 IPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH  215 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~  215 (451)
                      .....|+..+.+.++    .+.+.+||+...|...++.+.-.++.  .+   ..+.-++-..|-|-|+....+.-.    
T Consensus        78 ~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~s--dG---~~k~illPLaPeYiGY~d~~l~~d----  148 (417)
T COG3977          78 VLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRS--DG---TEKKILLPLAPEYIGYADAGLEED----  148 (417)
T ss_pred             HHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccC--CC---cceeEeeccChhhccccccccCcc----
Confidence            336677777888776    67899999998888777774432221  01   122333445888888865433211    


Q ss_pred             cCCCCcCCCCCee------EeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008          216 YRSPFEPVMPGVN------FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ  289 (451)
Q Consensus       216 ~~~~~~~~~~~~~------~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~  289 (451)
                         .|....|.+.      +--+.|.++|+-   .+++.+|++.-..+++|. +.+++++.+|-.|+++||++||.|.+|
T Consensus       149 ---~fVs~kP~iel~~~g~FKY~vDF~~l~i---~e~~g~ic~SRPtNPTGN-VlTdeE~~kldalA~~~giPliIDnAY  221 (417)
T COG3977         149 ---LFVSAKPNIELLPAGQFKYHVDFEHLHI---GESTGAICVSRPTNPTGN-VLTDEELAKLDALARQHGIPLIIDNAY  221 (417)
T ss_pred             ---ceeeccCCcccccccceeeccCHHHccc---ccccceEEecCCCCCCCC-cccHHHHHHHHHHhhhcCCcEEEeccc
Confidence               1111222221      111236666642   346888888866666664 569999999999999999999999998


Q ss_pred             cCCCcccccccccccCCCccee---eecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChH
Q 013008          290 CGLGRTGYLWAHEHYGIFPDIM---TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA  366 (451)
Q Consensus       290 tg~gr~G~~~~~~~~~~~pdi~---t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~  366 (451)
                      . .-..+--|.-...-..++++   ++||.=-.|.|+|.++++++++..+......-+.+...++.|.+...++   +.+
T Consensus       222 g-~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie---~gd  297 (417)
T COG3977         222 G-VPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIE---SGD  297 (417)
T ss_pred             C-CCCCceecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhh---cch
Confidence            3 32333322211112234443   4556433589999999999999988643222222333344444444443   211


Q ss_pred             HH-----------HH--------HHhCCCC--cceeccccee-EEEEe---cCChHHHHHHHHHCCceeeecCC------
Q 013008          367 FL-----------AS--------KLARNPH--VKDVRGLGLI-IGIEF---DVSATPVVDACRDSGLLVLTAGK------  415 (451)
Q Consensus       367 ~~-----------~~--------~~~~~~~--~~~v~g~G~~-~~~~~---~~~~~~~~~~l~~~Gv~~~~~~~------  415 (451)
                      ++           .+        +.+.+|.  ..--+++|.+ +|+-|   ......+.++|.++||++.|+..      
T Consensus       298 l~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~  377 (417)
T COG3977         298 LLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLD  377 (417)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCC
Confidence            11           11        2233441  1113566654 44444   35678999999999999998741      


Q ss_pred             ------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008          416 ------GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN  449 (451)
Q Consensus       416 ------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~  449 (451)
                            ...+|+  +++-.++.|+..+++|.+.+++.-++
T Consensus       378 ~ewpH~hqC~Rm--n~~~~~~~ie~Gva~lae~ve~~yq~  415 (417)
T COG3977         378 KEWPHTHQCMRM--NYVPEPEKIEKGVAILAEEVERAYQE  415 (417)
T ss_pred             CCCCCccceEEE--ecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence                  235666  78889999999999999999887654

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.65  E-value=2.2e-14  Score=143.81  Aligned_cols=173  Identities=12%  Similarity=0.076  Sum_probs=119.4

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV  194 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii  194 (451)
                      ...+-.+++.+.... ++.+....++...+|++.++++.+.+.++.++||+.|+.+++..+.           .++|+||
T Consensus        37 ~~~~~~~~~~~~~~~-g~~ysR~~nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all-----------~~GD~VI  104 (432)
T PRK06702         37 DTSDDLAALFNLEAE-GYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNIC-----------SSGDHLL  104 (432)
T ss_pred             CCHHHHHHHHhcccc-CceeECCCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhc-----------CCCCEEE
Confidence            334444444433322 2223333466688999999999998889999999999999998654           1689999


Q ss_pred             EEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHH
Q 013008          195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR  273 (451)
Q Consensus       195 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~  273 (451)
                      +..++|.+........-         ......+.+++.+ |++.++++|.+ ++++|++|...++.+.++.    +++|+
T Consensus       105 ~~~~~Y~~T~~~~~~~l---------~~~Gi~v~~vd~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~D----i~~I~  170 (432)
T PRK06702        105 CSSTVYGGTFNLFGVSL---------RKLGIDVTFFNPNLTADEIVALAND-KTKLVYAESLGNPAMNVLN----FKEFS  170 (432)
T ss_pred             ECCCchHHHHHHHHHHH---------HHCCCEEEEECCCCCHHHHHHhCCc-CCeEEEEEcCCCccccccC----HHHHH
Confidence            99999976543211100         0112345566664 89999999975 5778888886555565555    99999


Q ss_pred             HHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccC
Q 013008          274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG  319 (451)
Q Consensus       274 ~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~  319 (451)
                      ++|++||+++|+|+++.      .+..+.-+....||+  +++|.++|
T Consensus       171 ~iA~~~gi~livD~T~~------tP~~~~pl~~GADIvv~S~TKy~~G  212 (432)
T PRK06702        171 DAAKELEVPFIVDNTLA------TPYLCQAFEHGANIIVHSTTKYIDG  212 (432)
T ss_pred             HHHHHcCCEEEEECCCC------chhhCChhhcCCCEEEEccccccCC
Confidence            99999999999999973      122333334456665  67898886

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.64  E-value=6e-14  Score=143.22  Aligned_cols=318  Identities=15%  Similarity=0.136  Sum_probs=175.9

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhh-c--ccccCCC--CCHHHHHH----HHHHhhccC--CCeEEec---CCH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANV-L--THVSNMY--YSIPQIEL----AKRLVACSF--ADRVFFS---NTG  164 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~--~~~~~~~--~~~~~~~l----~~~l~~~~~--~e~v~~~---~sG  164 (451)
                      +.|.+..+-.     ...|.+++++...+.+ +  ++.+..+  ......++    .+++++.++  .+.+.++   +||
T Consensus        35 ~~l~l~~sen-----~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sg  109 (452)
T PTZ00094         35 EGLELIASEN-----FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSG  109 (452)
T ss_pred             cCeeEecccc-----cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCch
Confidence            4555554433     3578899998887753 3  1111111  12222333    346677776  3455555   789


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHH
Q 013008          165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATR  239 (451)
Q Consensus       165 ~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le  239 (451)
                      ++||..++..+.   +        ++++||+. ..-||..............  ......-.+..++++     |+++|+
T Consensus       110 t~an~~v~~al~---~--------~gd~Ii~~-~~ehg~~l~~~~~l~~~~~--~~~~~~~~~~~~~~~~~g~id~~~L~  175 (452)
T PTZ00094        110 SPANFAVYTALL---Q--------PHDRIMGL-DLPSGGHLTHGFYTAKKKV--SATSIYFESLPYQVNEKGLIDYDKLE  175 (452)
T ss_pred             HHHHHHHHHHhc---C--------CCCEEEec-ccccCCccccccccccccc--ccceeeeeeeecccCCCCCcCHHHHH
Confidence            999999998664   1        57777775 4446554332110000000  000000001112222     899999


Q ss_pred             HhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccc
Q 013008          240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPL  317 (451)
Q Consensus       240 ~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~l  317 (451)
                      ++++..+.+.|++.  .++.|...+    +++|.++|+++|+++++|++|+ +|..+......... ..|++++|  |+|
T Consensus       176 ~~l~~~~~~lvi~~--~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~-~~D~l~~S~hK~l  247 (452)
T PTZ00094        176 ELAKAFRPKLIIAG--ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP-YADVVTTTTHKSL  247 (452)
T ss_pred             HHHHHhCCCEEEEe--CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC-CCcEEEcCCccCC
Confidence            99963334455552  234556666    9999999999999999999995 55443211111111 47887665  988


Q ss_pred             cCCcccccccccHHHHhhc----cCCCccCCC--CCcHHHHHHHHHHHHHhcChH---HHHH-------HHhCC--CCcc
Q 013008          318 AGGLPIGAALVTEKVASAI----NYGDHGSTF--AGSPLVCNAAIAVLDKISNPA---FLAS-------KLARN--PHVK  379 (451)
Q Consensus       318 g~G~~iG~v~~~~~i~~~~----~~~~~~~t~--~~~~~~~aaa~aal~~~~~~~---~~~~-------~~~~~--~~~~  379 (451)
                      .|.. .|++++++++.+.+    ..... ..+  +.++...++..++++.+...+   +.++       +.+.+  ..+.
T Consensus       248 ~GP~-Gg~l~~~~~~~~~l~~~~~~~~~-p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~  325 (452)
T PTZ00094        248 RGPR-SGLIFYRKKVKPDIENKINEAVF-PGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYD  325 (452)
T ss_pred             CCCC-ceEEEEecccchHHHHhhccccC-CCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence            6533 36676666544322    11111 112  346677777888888874432   2222       21111  0111


Q ss_pred             eec-c-cceeEEEEec---CChHHHHHHHHHCCceeeec----C----CCCEEEEeCCCCC----CHHHHHHHHHHHHHH
Q 013008          380 DVR-G-LGLIIGIEFD---VSATPVVDACRDSGLLVLTA----G----KGNVVRLVPPLII----SEQELDQAVEILCKT  442 (451)
Q Consensus       380 ~v~-g-~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~----~----~~~~iri~~~~~~----t~e~i~~~l~~l~~~  442 (451)
                      ... + ......+.+.   .....+...|.++||.+...    .    .++.+|++++..+    +++|++++++.|.++
T Consensus       326 v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~  405 (452)
T PTZ00094        326 LVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRA  405 (452)
T ss_pred             EecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHH
Confidence            111 1 1122333442   24566777776789998522    1    1357999995554    499999999999998


Q ss_pred             HHH
Q 013008          443 LPV  445 (451)
Q Consensus       443 l~~  445 (451)
                      +..
T Consensus       406 ~~~  408 (452)
T PTZ00094        406 VKL  408 (452)
T ss_pred             HHH
Confidence            874

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.64  E-value=1e-13  Score=138.36  Aligned_cols=293  Identities=13%  Similarity=0.103  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      ++-.+++.+.++....   ....+...++++++++.++.+++++++||++|+..+++++.  .        .++++||+.
T Consensus        11 ~~~~~~~~~~l~~~~~---~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~--~--------~~Gd~Viv~   77 (375)
T PRK11706         11 GTELDYIQQAMSSGKL---CGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLD--I--------QPGDEVIMP   77 (375)
T ss_pred             HHHHHHHHHHHHcCCc---cCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhC--C--------CCCCEEEEC
Confidence            3345667776654321   11234578899999999999999999999999998887542  1        168999999


Q ss_pred             cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC  276 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~  276 (451)
                      .++|..........+....+    .+..++..   ..|++++++.+.+ ++++|++.  + ..|...+    +++|.++|
T Consensus        78 ~~t~~~~~~~~~~~G~~~v~----~d~d~~~~---~~d~~~le~~i~~-~tk~i~~~--~-~~G~~~~----~~~i~~la  142 (375)
T PRK11706         78 SYTFVSTANAFVLRGAKIVF----VDIRPDTM---NIDETLIEAAITP-KTRAIVPV--H-YAGVACE----MDTIMALA  142 (375)
T ss_pred             CCCcHHHHHHHHHcCCEEEE----EecCCCcC---CcCHHHHHHhcCC-CCeEEEEe--C-CCCCccC----HHHHHHHH
Confidence            99998665433322221111    11111110   1278999999975 45666643  2 3454444    89999999


Q ss_pred             HHhCCEEEEeccccCCCc--ccccccccccCCCcceeeec----ccccCCcccccccccHHHHhhccCCC----------
Q 013008          277 DDAGALLVFDEVQCGLGR--TGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVTEKVASAINYGD----------  340 (451)
Q Consensus       277 ~~~g~llI~DEv~tg~gr--~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~~~i~~~~~~~~----------  340 (451)
                      ++||+++|.|++|+ +|.  .|..     .+---|+.+||    |.++.|.+.++++.++++.+.++...          
T Consensus       143 ~~~~i~vIeD~a~a-~g~~~~~~~-----~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~  216 (375)
T PRK11706        143 KKHNLFVVEDAAQG-VMSTYKGRA-----LGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFF  216 (375)
T ss_pred             HHcCCEEEEECccc-cccccCCee-----eecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhh
Confidence            99999999999996 432  1221     12224777888    99987666667777788776543210          


Q ss_pred             -----------ccCCCCCcHHHHHHHHHHHHHhcChH-----HHHH---HHhCCC---Ccce--ecc----cceeEEEEe
Q 013008          341 -----------HGSTFAGSPLVCNAAIAVLDKISNPA-----FLAS---KLARNP---HVKD--VRG----LGLIIGIEF  392 (451)
Q Consensus       341 -----------~~~t~~~~~~~~aaa~aal~~~~~~~-----~~~~---~~~~~~---~~~~--v~g----~G~~~~~~~  392 (451)
                                 .+.++-.+.+.++.+++-|+.++...     ..+.   .+++++   .+..  ..+    ...++++.+
T Consensus       217 ~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (375)
T PRK11706        217 RGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKL  296 (375)
T ss_pred             ccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEE
Confidence                       01222234555666666666543211     1111   233433   1110  111    122344444


Q ss_pred             c--CChHHHHHHHHHCCceeeec----C-------------C--------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          393 D--VSATPVVDACRDSGLLVLTA----G-------------K--------GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       393 ~--~~~~~~~~~l~~~Gv~~~~~----~-------------~--------~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .  ....++.+.|.++||.+...    .             .        .+.+.+-.....+++|++.+++.|++++
T Consensus       297 ~~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        297 RDLEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             CCcCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence            3  35678999999999975411    0             0        1224443344578999999999998764

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.63  E-value=9.5e-14  Score=138.65  Aligned_cols=291  Identities=15%  Similarity=0.144  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      ++-.+++.+.++....    +..+...+|+++++++++.+.+++++||++|+..+++++.  .        .++|+||+.
T Consensus        14 ~~e~~~~~~~l~~~~~----~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~--~--------~~Gd~Viv~   79 (379)
T PRK11658         14 DEELAAVKEVLRSGWI----TTGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALG--I--------GPGDEVITP   79 (379)
T ss_pred             HHHHHHHHHHHHcCCc----cCCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcC--C--------CCCCEEEEC
Confidence            4557777777765321    2344578999999999998889999999999999998652  1        168999999


Q ss_pred             cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC  276 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~  276 (451)
                      +++|.+........+....+    .+..++..   .-|++++++.+.+ ++++|+  |++. .|...+    +++|.++|
T Consensus        80 ~~~~~~~~~~~~~~G~~~v~----vd~~~~~~---~~d~~~l~~~i~~-~tkav~--~~~~-~G~~~d----~~~i~~~a  144 (379)
T PRK11658         80 SLTWVSTLNMIVLLGATPVM----VDVDRDTL---MVTPEAIEAAITP-RTKAII--PVHY-AGAPAD----LDAIRAIG  144 (379)
T ss_pred             CCcHHHHHHHHHHcCCEEEE----EecCCCcC---CcCHHHHHHhccc-CCeEEE--EeCC-CCCcCC----HHHHHHHH
Confidence            99997764333222211110    11111110   0278999999975 466665  3333 454444    89999999


Q ss_pred             HHhCCEEEEecccc-CCCcccccccccccCCCcceeeec--ccccCCccccccccc-HHHHhhccCCC-c----------
Q 013008          277 DDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAINYGD-H----------  341 (451)
Q Consensus       277 ~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~~~~~-~----------  341 (451)
                      ++||+++|+|++|+ |.-..|..  ....+  .++.+|+  |.+++| +.|+++.+ +++.+.++... +          
T Consensus       145 ~~~gi~vi~D~a~a~g~~~~~~~--~g~~g--~~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~  219 (379)
T PRK11658        145 ERYGIPVIEDAAHAVGTYYKGRH--IGARG--TAIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQ  219 (379)
T ss_pred             HHcCCeEEEECCCccCCeECCee--cCCCC--CEEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCCCcchhhhh
Confidence            99999999999996 32222221  12233  3667776  666544 66777764 67766553210 0          


Q ss_pred             -------------cCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec-c---cc--eeEEEEe
Q 013008          342 -------------GSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR-G---LG--LIIGIEF  392 (451)
Q Consensus       342 -------------~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~-g---~G--~~~~~~~  392 (451)
                                   +..+..+.+.++.++..++.+++  +.++          .++.++...... .   ..  .++.+.+
T Consensus       220 ~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~--~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (379)
T PRK11658        220 TQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEA--LNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRV  297 (379)
T ss_pred             cccCCCcceeeccccccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEE
Confidence                         11122344555556565654432  1111          233444211111 1   11  1222333


Q ss_pred             c-----CChHHHHHHHHHCCceeee----cC------------C--------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          393 D-----VSATPVVDACRDSGLLVLT----AG------------K--------GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       393 ~-----~~~~~~~~~l~~~Gv~~~~----~~------------~--------~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +     ....++.+.|.++||-+..    ..            .        ...+.+-.....|+|+++++++.|++++
T Consensus       298 ~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        298 DEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             CCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence            2     2467899999999986541    10            0        1234444455689999999999999875

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.63  E-value=6.8e-14  Score=141.05  Aligned_cols=163  Identities=20%  Similarity=0.153  Sum_probs=114.6

Q ss_pred             CCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       135 ~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      ....++...+|+++|+++.+.+.+++++||+.|+..++..+..           ++++||+....|.+.........   
T Consensus        64 sr~~~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~-----------~Gd~Vv~~~~~y~~t~~~~~~~l---  129 (436)
T PRK07812         64 TRIMNPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAG-----------AGDHIVSSPRLYGGTYNLFHYTL---  129 (436)
T ss_pred             cCCCCchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC-----------CCCEEEEeCCcchHHHHHHHHHh---
Confidence            3445666889999999999988899999999999999976541           68899999887755432111100   


Q ss_pred             CcCCCCcCCCCCeeEee-CCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          215 HYRSPFEPVMPGVNFVE-YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                            ......+.+++ ..|++++++++++ ++++|++|.+.++.|.+.+    +++|.++|++||+++|+|+++.. +
T Consensus       130 ------~~~Gi~v~~vdd~~d~e~l~~ai~~-~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~-~  197 (436)
T PRK07812        130 ------PKLGIEVSFVEDPDDLDAWRAAVRP-NTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIAT-P  197 (436)
T ss_pred             ------hcCeEEEEEECCCCCHHHHHHhCCC-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-c
Confidence                  00112233442 3589999998874 6789999999888898888    99999999999999999999852 1


Q ss_pred             cccccccccccCCCccee--eecccccC-C-cccccccc
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALV  328 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~  328 (451)
                      ...     .......|++  +++|.++| | .-.|.++.
T Consensus       198 ~~~-----~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~  231 (436)
T PRK07812        198 YLI-----RPLEHGADIVVHSATKYLGGHGTAIAGVIVD  231 (436)
T ss_pred             ccC-----CchhcCCCEEEEecccccCCCCCeEEEEEEc
Confidence            111     1122346665  56799985 5 33444443

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.62  E-value=9.1e-14  Score=140.28  Aligned_cols=161  Identities=19%  Similarity=0.166  Sum_probs=116.1

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +....++...+|+++++++.+.+.+++++||++|+..++..+..           ++|+||+....|++.........  
T Consensus        58 y~R~~~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~-----------~Gd~Vi~~~~~y~~t~~~~~~~l--  124 (433)
T PRK08134         58 YSRISNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMG-----------AGSHIVASSALYGGSHNLLHYTL--  124 (433)
T ss_pred             eecCcChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEeCCccHHHHHHHHHHH--
Confidence            34456667899999999999977789999999999999986541           58899999888876432211100  


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                             ......+.+++.+|+++++++|.+ ++++|++|.+.++.|.+.+    +++|.++|++||+++|+|.++.. +
T Consensus       125 -------~~~Gi~v~~vd~~d~~~l~~~i~~-~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a~-~  191 (433)
T PRK08134        125 -------RRFGIETTFVKPGDIDGWRAAIRP-NTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFTT-P  191 (433)
T ss_pred             -------hhCCeEEEEECCCCHHHHHHhcCC-CCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCcc-c
Confidence                   011234556666789999999975 6788899988777787777    99999999999999999999842 1


Q ss_pred             cccccccccccCCCcceeeec--ccccC-Cccccc
Q 013008          294 RTGYLWAHEHYGIFPDIMTLA--KPLAG-GLPIGA  325 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~s--K~lg~-G~~iG~  325 (451)
                      ..     ........|++++|  |.++| |-.+|.
T Consensus       192 ~~-----~~pl~~GaD~vv~S~tK~l~g~g~~~gG  221 (433)
T PRK08134        192 YL-----LRPFEHGADLVYHSATKFLGGHGTAIGG  221 (433)
T ss_pred             cc-----CCchhcCCCEEEeccccccCCCCCceEE
Confidence            11     11123456777654  98875 533333

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.62  E-value=6.8e-15  Score=138.16  Aligned_cols=186  Identities=20%  Similarity=0.182  Sum_probs=138.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          112 LGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       112 lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      +.+.+++=..++- +++..++.+....++....|+++++.+.+.-..+.+.||..|+..|+..+..           ++|
T Consensus        35 y~F~d~~haa~lF-~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~-----------aGD  102 (426)
T COG2873          35 YVFDDTDHAAALF-GLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAG-----------AGD  102 (426)
T ss_pred             eecCCHHHHHHHh-CCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhcc-----------CCC
Confidence            3445554333222 3455566666777888899999999998866777889999999999986652           699


Q ss_pred             eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHH
Q 013008          192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF  271 (451)
Q Consensus       192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~  271 (451)
                      .||.....|-|.... ...+        +..+.-.+.+++.+|++.++++|++ ++++|++|.+-++.+.++.    ++.
T Consensus       103 ~iVss~~LYGGT~~l-f~~t--------l~~~Gi~v~fvd~~d~~~~~~aI~~-nTkavf~EtigNP~~~v~D----ie~  168 (426)
T COG2873         103 NIVSSSKLYGGTYNL-FSHT--------LKRLGIEVRFVDPDDPENFEAAIDE-NTKAVFAETIGNPGLDVLD----IEA  168 (426)
T ss_pred             eeEeeccccCchHHH-HHHH--------HHhcCcEEEEeCCCCHHHHHHHhCc-ccceEEEEeccCCCccccC----HHH
Confidence            999999999665422 2211        2233456788888899999999975 7899999999888888777    999


Q ss_pred             HHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccC-Cccccccccc
Q 013008          272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVT  329 (451)
Q Consensus       272 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~  329 (451)
                      |.++|++||+++|+|...+.-      +.+.-+....||+  +++|.+|| |-.+|.++..
T Consensus       169 ia~iAh~~gvpliVDNT~atp------yl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD  223 (426)
T COG2873         169 IAEIAHRHGVPLIVDNTFATP------YLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVD  223 (426)
T ss_pred             HHHHHHHcCCcEEEecCCCcc------eecchhhcCCCEEEEeecccccCCccccceEEEe
Confidence            999999999999999987521      2333344567887  56799997 7777777654

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.62  E-value=8.2e-14  Score=138.68  Aligned_cols=194  Identities=15%  Similarity=0.135  Sum_probs=127.4

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+.++...+|+++|+++.+.+..++++||+.|+..++.++.            ++|+||+.++.|.+.......... 
T Consensus        44 y~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~~l~------------~Gd~Viv~~~~y~~~~~~~~~~~~-  110 (377)
T PRK07671         44 YSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMMLFS------------SGDHVILTDDVYGGTYRVMTKVLN-  110 (377)
T ss_pred             cCCCCChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHhC------------CCCEEEECCCccchHHHHHHHHHh-
Confidence            3456677789999999999987778889999988876654322            689999999998755322111100 


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                              .....+.+++..|++++++++++ ++++|++|..+++.|...+    +++|.++|+++|+++|+||+|... 
T Consensus       111 --------~~G~~v~~v~~~d~~~l~~ai~~-~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~-  176 (377)
T PRK07671        111 --------RFGIEHTFVDTSNLEEVEEAIRP-NTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTP-  176 (377)
T ss_pred             --------cCCeEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCcc-
Confidence                    01123445566689999999975 5678888877667776665    999999999999999999998532 


Q ss_pred             cccccccccccCCCccee--eecccccC-C-cccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVL  359 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal  359 (451)
                      ..+..     .....|++  +++|.++| + .-.|++++ ++++++.+........-..+|..+..++..+
T Consensus       177 ~~~~p-----~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l  242 (377)
T PRK07671        177 YWQSP-----ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGL  242 (377)
T ss_pred             ccCCh-----hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCc
Confidence            22221     12234665  56799985 2 34455555 5677776653222212233555555444433

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.61  E-value=3.4e-13  Score=134.92  Aligned_cols=294  Identities=18%  Similarity=0.149  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      ++-.+++.+.+.....    .......++++.++++++.+..++++||++|+..+++.+.  .        .++|+||+.
T Consensus        10 ~~~~~~v~~~~~~~~~----~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~--~--------~~Gd~Viv~   75 (380)
T TIGR03588        10 QDDIDAVVEVLKSDFL----TQGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALG--V--------GPGDRVWTT   75 (380)
T ss_pred             HHHHHHHHHHHhcCCc----cCChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcC--C--------CCCCEEEeC
Confidence            4456777777765321    2234467899999999987777888899999999998652  1        158999999


Q ss_pred             cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHH
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLR  273 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~  273 (451)
                      .++|++........+....+    .+..++..   ..|++++++.+..   .++++|++..   ..|...+    +++|.
T Consensus        76 ~~~~~~~~~~~~~~G~~~~~----~~~~~~~~---~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~----~~~i~  141 (380)
T TIGR03588        76 PITFVATANCALYCGAKVDF----VDIDPDTG---NIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVD----MQAIA  141 (380)
T ss_pred             CcchHHHHHHHHHcCCEEEE----EecCCCcC---CcCHHHHHHHhhcccCCCceEEEEeC---CCCccCC----HHHHH
Confidence            99987764332222211111    11111110   1278999999972   3566666422   2454444    89999


Q ss_pred             HHHHHhCCEEEEeccccCCCcccccccccccCC--Ccceeeec----ccccCCcccccccc-cHHHHhhccCC---C---
Q 013008          274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLA----KPLAGGLPIGAALV-TEKVASAINYG---D---  340 (451)
Q Consensus       274 ~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~--~pdi~t~s----K~lg~G~~iG~v~~-~~~i~~~~~~~---~---  340 (451)
                      ++|++||++||+|++|+ +|..   +.....|.  .-|++++|    |.++.| ..|+++. ++++.+.++..   .   
T Consensus       142 ~l~~~~~~~lI~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~  216 (380)
T TIGR03588       142 ALAKKHGLKIIEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITK  216 (380)
T ss_pred             HHHHHcCCEEEEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCC
Confidence            99999999999999997 3311   01112232  34777766    878654 4566665 46666654321   0   


Q ss_pred             -------------------ccCCCCCcHHHHHHHHHHHHHhcCh-----HHHHH---HHhCCCCcceec---ccc---ee
Q 013008          341 -------------------HGSTFAGSPLVCNAAIAVLDKISNP-----AFLAS---KLARNPHVKDVR---GLG---LI  387 (451)
Q Consensus       341 -------------------~~~t~~~~~~~~aaa~aal~~~~~~-----~~~~~---~~~~~~~~~~v~---g~G---~~  387 (451)
                                         .+..+..+.+..+.+++.|+.++..     +..+.   .++.+|.+....   +..   .+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  296 (380)
T TIGR03588       217 DPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHL  296 (380)
T ss_pred             CcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEE
Confidence                               0111223455555565555544211     11111   334445332111   111   12


Q ss_pred             EEEEec----CChHHHHHHHHHCCceeeec----C---------C----C-------CEEEEeCCCCCCHHHHHHHHHHH
Q 013008          388 IGIEFD----VSATPVVDACRDSGLLVLTA----G---------K----G-------NVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       388 ~~~~~~----~~~~~~~~~l~~~Gv~~~~~----~---------~----~-------~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                      +.+.+.    ....++.+.|.++||.+...    .         .    +       ..+++-+....|++|++.+++.|
T Consensus       297 ~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l  376 (380)
T TIGR03588       297 YPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETL  376 (380)
T ss_pred             EEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHH
Confidence            223333    24678999999999876521    0         0    0       34666666678999999999999


Q ss_pred             HHHH
Q 013008          440 CKTL  443 (451)
Q Consensus       440 ~~~l  443 (451)
                      +++|
T Consensus       377 ~~~~  380 (380)
T TIGR03588       377 RKVL  380 (380)
T ss_pred             HHhC
Confidence            8764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.60  E-value=2.1e-13  Score=136.87  Aligned_cols=204  Identities=20%  Similarity=0.219  Sum_probs=124.0

Q ss_pred             CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccC--CCccee
Q 013008          234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG--IFPDIM  311 (451)
Q Consensus       234 d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~--~~pdi~  311 (451)
                      |++++++++.+.+..++++ ...+.++ ..+    +++|+++|++||++|++|++|+ +|-.|.....+.++  -..|++
T Consensus       208 D~d~l~~~~~~~~plvii~-g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~v  280 (493)
T PRK13580        208 DYDEIAALAREFKPLILVA-GYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADIV  280 (493)
T ss_pred             CHHHHHHHHhhcCCEEEEe-CccccCC-CcC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcEE
Confidence            7899999997655555555 4333343 456    9999999999999999999995 54443211111111  145665


Q ss_pred             --eecccccCCcccccccccHHHHhhccCCCccCCCCCc-HHHHHHHHHHHHHhcChH---HHHH-------HHhCCC--
Q 013008          312 --TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGS-PLVCNAAIAVLDKISNPA---FLAS-------KLARNP--  376 (451)
Q Consensus       312 --t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~-~~~~aaa~aal~~~~~~~---~~~~-------~~~~~~--  376 (451)
                        |++|+|.|. ..|++++++++.+.+... ....++++ +...+|+..++..+.+++   +.++       +.+.+.  
T Consensus       281 tgT~hKaL~GP-~GG~I~~~~~l~~~L~~a-~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~  358 (493)
T PRK13580        281 TTTTHKTLRGP-RGGLVLAKKEYADAVDKG-CPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR  358 (493)
T ss_pred             EeCChhhccCC-CeEEEEecHHHHHHHhhC-CCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc
Confidence              678999542 358888999988888432 23334332 223333333455443332   3333       222111  


Q ss_pred             Ccceec--ccceeEEEEecCC---hHHHHHHHHHCCceeeec-------C--CCCEEEEeCCC----CCCHHHHHHHHHH
Q 013008          377 HVKDVR--GLGLIIGIEFDVS---ATPVVDACRDSGLLVLTA-------G--KGNVVRLVPPL----IISEQELDQAVEI  438 (451)
Q Consensus       377 ~~~~v~--g~G~~~~~~~~~~---~~~~~~~l~~~Gv~~~~~-------~--~~~~iri~~~~----~~t~e~i~~~l~~  438 (451)
                      .+..+.  ....++.+++...   ...+.+.|.++||++.+.       +  ....|||.++.    .++++|++++++.
T Consensus       359 G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~  438 (493)
T PRK13580        359 GARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAEL  438 (493)
T ss_pred             CCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHH
Confidence            111111  2345667777322   235667888999998732       2  02569999887    5679999999999


Q ss_pred             HHHHHHHH
Q 013008          439 LCKTLPVL  446 (451)
Q Consensus       439 l~~~l~~~  446 (451)
                      |.++++..
T Consensus       439 l~~~l~~~  446 (493)
T PRK13580        439 IVKVLSNT  446 (493)
T ss_pred             HHHHHHhh
Confidence            99988653

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.59  E-value=2.4e-13  Score=132.04  Aligned_cols=301  Identities=23%  Similarity=0.225  Sum_probs=190.5

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      .+|+|++|+.+..-.  |.+ .-......++.+.|...++   .+-+++..||+-|+++++..+.           .++|
T Consensus        16 v~~~V~~am~~~~~~--h~s-~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~-----------~pgd   81 (383)
T COG0075          16 VPPRVLLAMARPMVG--HRS-PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV-----------EPGD   81 (383)
T ss_pred             CCHHHHHHhcCCCCC--CCC-HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc-----------CCCC
Confidence            468888877654311  111 1122336677777777777   2567778999999999999666           2699


Q ss_pred             eEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeC---CCHHHHHHhcC-CCCeEEEEEccccCCCCccccCH
Q 013008          192 EFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEY---GNIEATRKLIQ-PGKTAAVFVEPIQGEGGIYSATK  266 (451)
Q Consensus       192 ~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~-~~~~aavi~ep~~~~~G~~~~~~  266 (451)
                      +||+...+..|....-+.-. +...          .+...+|   -|+++++++|+ .+++.+|.+--.-.++|.+-|  
T Consensus        82 kVLv~~nG~FG~R~~~ia~~~g~~v----------~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp--  149 (383)
T COG0075          82 KVLVVVNGKFGERFAEIAERYGAEV----------VVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP--  149 (383)
T ss_pred             eEEEEeCChHHHHHHHHHHHhCCce----------EEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc--
Confidence            99999988888754433211 1110          0111122   28999999998 445655555555555677777  


Q ss_pred             HHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCC------
Q 013008          267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD------  340 (451)
Q Consensus       267 ~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~------  340 (451)
                        +++|.++|++||+++|+|-|-+ +|  |..+-.+.+|+..-+..--|+|++--.+|++..+++..+.+....      
T Consensus       150 --l~~I~~~~k~~g~l~iVDaVsS-~G--g~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~yl  224 (383)
T COG0075         150 --LKEIAKAAKEHGALLIVDAVSS-LG--GEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYL  224 (383)
T ss_pred             --HHHHHHHHHHcCCEEEEEeccc-CC--CcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceee
Confidence              9999999999999999998875 54  445556666654444445599986444677778887776654221      


Q ss_pred             ------------ccCCCCCcHHHHHHHHHHHHHhcChHHHHHHHhCCC-----Ccceecccce------------eEEEE
Q 013008          341 ------------HGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNP-----HVKDVRGLGL------------IIGIE  391 (451)
Q Consensus       341 ------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~-----~~~~v~g~G~------------~~~~~  391 (451)
                                  ..+.|+.+.....+..++|+.+.++++..+ .++|.     ....++..|+            +..+.
T Consensus       225 DL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r-~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~  303 (383)
T COG0075         225 DLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEAR-IARHRRLAEALRAGLEALGLELFADPERRSPTVTAIK  303 (383)
T ss_pred             cHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEE
Confidence                        123334445556777788998877764332 11111     0111222222            22222


Q ss_pred             ec--CChHHHHHHHHHC-CceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          392 FD--VSATPVVDACRDS-GLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       392 ~~--~~~~~~~~~l~~~-Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ..  .+..++...++++ |+.+.++..   +..+||...-..+.+++..++.+|+.++.++.
T Consensus       304 ~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g  365 (383)
T COG0075         304 VPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG  365 (383)
T ss_pred             CCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence            21  2334444466655 887776632   56899987778899999999999999998764

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.57  E-value=5.5e-13  Score=132.12  Aligned_cols=274  Identities=13%  Similarity=0.068  Sum_probs=158.8

Q ss_pred             CCCCCHHHHHHHHHHHhhcccccCC-CC------CHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhc
Q 013008          112 LGHGDADWIKAVVDQANVLTHVSNM-YY------SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHS  182 (451)
Q Consensus       112 lG~~~p~v~~a~~~~~~~~~~~~~~-~~------~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~  182 (451)
                      .|..++.+.+++.+.+......+.. .+      .....+++++++++++  .+.++|++|+++|+..+++.+.....  
T Consensus         7 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~--   84 (353)
T TIGR03235         7 TTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGE--   84 (353)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcc--
Confidence            3457899999999887542111111 11      1225678888998887  56899999999999999987653210  


Q ss_pred             CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccC
Q 013008          183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQG  257 (451)
Q Consensus       183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~  257 (451)
                           .++++.|+.....|+.............         ..+..++.     .|+++|++.+++ ++++|+++.+++
T Consensus        85 -----~~g~~~vi~~~~~~~s~~~~~~~~~~~G---------~~v~~v~~~~~~~~d~~~l~~~l~~-~~~lv~~~~~~n  149 (353)
T TIGR03235        85 -----QKGKKHIITSAIEHPAVLEPIRALERNG---------FTVTYLPVDESGRIDVDELADAIRP-DTLLVSIMHVNN  149 (353)
T ss_pred             -----cCCCCeeeEcccccHHHHHHHHHHHhcC---------CEEEEEccCCCCcCCHHHHHHhCCC-CCEEEEEEcccC
Confidence                 0232344444455554433322110000         11122221     278999999964 578888888888


Q ss_pred             CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhh
Q 013008          258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASA  335 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~  335 (451)
                      ++|.+.+    +++|.++|++||+++|+|++|. +|..  .  .+.....+|++++|  |.++. ..+|+++++++..+.
T Consensus       150 ~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~--~--~~~~~~~~D~~~~s~~K~~gp-~g~g~l~~~~~~~~~  219 (353)
T TIGR03235       150 ETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKI--T--VDLSADRIDLISCSGHKIYGP-KGIGALVIRKRGKPK  219 (353)
T ss_pred             CceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCc--c--ccccccCCCEEEeehhhcCCC-CceEEEEEccCcccc
Confidence            8898877    8999999999999999999985 4322  1  11122357888776  97542 347888888764322


Q ss_pred             --ccCCCc-------cCCCCCcHHHHHHHHHHHHHhcC--hHHHHH-------HHhCC--CCcceec----ccceeEEEE
Q 013008          336 --INYGDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLAS-------KLARN--PHVKDVR----GLGLIIGIE  391 (451)
Q Consensus       336 --~~~~~~-------~~t~~~~~~~~aaa~aal~~~~~--~~~~~~-------~~~~~--~~~~~v~----g~G~~~~~~  391 (451)
                        +.+...       ......++...++..++++.+..  +...++       +.+.+  +.+..+.    ....+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~  299 (353)
T TIGR03235       220 APLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFS  299 (353)
T ss_pred             cccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEE
Confidence              222111       01123455666667777776532  122222       22221  2222111    112244444


Q ss_pred             ec-CChHHHHHHHHHCCceeeec
Q 013008          392 FD-VSATPVVDACRDSGLLVLTA  413 (451)
Q Consensus       392 ~~-~~~~~~~~~l~~~Gv~~~~~  413 (451)
                      ++ .+..++.+.|. +||.+.++
T Consensus       300 ~~~~~~~~v~~~L~-~~i~v~~g  321 (353)
T TIGR03235       300 IDGVNSEALIVNLR-ADAAVSTG  321 (353)
T ss_pred             eCCcCHHHHHHHHh-CCeEEEch
Confidence            43 34567777775 58888765

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.57  E-value=2.8e-13  Score=132.58  Aligned_cols=280  Identities=20%  Similarity=0.189  Sum_probs=178.3

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .+....++....|++.++++.+.+.++.++||..|+..++....+           ++|+||..+..|.|..........
T Consensus        56 ~Y~R~~nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~-----------~GD~vl~~~~~YG~t~~~~~~~l~  124 (396)
T COG0626          56 DYSRTGNPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLK-----------AGDHVLLPDDLYGGTYRLFEKILQ  124 (396)
T ss_pred             ccccCCCccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcC-----------CCCEEEecCCccchHHHHHHHHHH
Confidence            345556777999999999999999999999999999998876652           689999999999765543322211


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                               ...-.+.+++..|.+.+++.+.++++++|++|++-++.--++.    +++|+++|+++|+++|+|+++...
T Consensus       125 ---------~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfatP  191 (396)
T COG0626         125 ---------KFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFATP  191 (396)
T ss_pred             ---------hcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCcccc
Confidence                     1223455666667777777776568999999998777665666    999999999999999999998532


Q ss_pred             CcccccccccccCCCcceee--ecccccC-C-ccccccccc-HHHHhhccCCCc-cCCCCCcHHHHHHHHHHHHHhc-C-
Q 013008          293 GRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAINYGDH-GSTFAGSPLVCNAAIAVLDKIS-N-  364 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~-~-  364 (451)
                            ..+.-+....||++  ..|.++| + .-.|.++++ +++.+.+..... ......+|..+...+..|+.+. + 
T Consensus       192 ------~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~~Rm  265 (396)
T COG0626         192 ------VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLALRM  265 (396)
T ss_pred             ------cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHHHHH
Confidence                  12333344578774  5699998 4 666777755 455555421111 1122245666655554444321 0 


Q ss_pred             hHHHHH------HHhCCCCccee------------------cccceeEEEEecCC--hHHHHHHHHHC-------Cc---
Q 013008          365 PAFLAS------KLARNPHVKDV------------------RGLGLIIGIEFDVS--ATPVVDACRDS-------GL---  408 (451)
Q Consensus       365 ~~~~~~------~~~~~~~~~~v------------------~g~G~~~~~~~~~~--~~~~~~~l~~~-------Gv---  408 (451)
                      +...++      +++.+|.+..|                  .|.|.++.|++...  ..+|.+.|.--       |+   
T Consensus       266 ~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~~~a~SlGgveSL  345 (396)
T COG0626         266 ERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLGGVESL  345 (396)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCccEEeccCCCcccc
Confidence            111111      45556654432                  24788999998542  33344433211       11   


Q ss_pred             eeeec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          409 LVLTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       409 ~~~~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +..|.               | .++.+|+++.+    |+++.+++-|+++++.+
T Consensus       346 i~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al~~~  395 (396)
T COG0626         346 ISHPATMTHASIPLEERAKAGITDGLVRLSVGL----EDVEDLIADLEQALAKA  395 (396)
T ss_pred             cccccccCcccCCHhHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHHhh
Confidence            11110               0 13568886554    66777888888887754

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.57  E-value=1.3e-12  Score=132.21  Aligned_cols=278  Identities=18%  Similarity=0.171  Sum_probs=165.8

Q ss_pred             HHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHH-hhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~-~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ...+|+++++++++.+.+++++||++|+..|+.++... ....+   ..+++.||+..++|.+........+..+.+.  
T Consensus        64 ~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~---~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~v--  138 (438)
T PRK15407         64 FNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRA---LKPGDEVITVAAGFPTTVNPIIQNGLVPVFV--  138 (438)
T ss_pred             hHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccC---CCCCCEEEECCCCcHHHHHHHHHcCCEEEEE--
Confidence            36789999999999889999999999999999876311 00000   0258999999999976654433322211110  


Q ss_pred             CcCCCCCeeEeeCC-CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc--c
Q 013008          220 FEPVMPGVNFVEYG-NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT--G  296 (451)
Q Consensus       220 ~~~~~~~~~~~~~~-d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~--G  296 (451)
                        +..+    -.++ |++++++.+.+ ++++|++.+..|+.   .    .+++|.++|++||++||+|++|+ +|-.  |
T Consensus       139 --dvd~----~~~~id~~~le~~i~~-~tkaVi~~~~~G~p---~----dl~~I~~la~~~gi~vIeDaa~a-~G~~~~g  203 (438)
T PRK15407        139 --DVEL----PTYNIDASLLEAAVSP-KTKAIMIAHTLGNP---F----DLAAVKAFCDKHNLWLIEDNCDA-LGSTYDG  203 (438)
T ss_pred             --ecCC----CcCCcCHHHHHHHcCc-CCeEEEEeCCCCCh---h----hHHHHHHHHHHCCCEEEEECccc-hhhhcCC
Confidence              1111    0122 78999999865 57788887765442   2    38999999999999999999996 4321  2


Q ss_pred             ccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccC----CC---------------------------
Q 013008          297 YLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINY----GD---------------------------  340 (451)
Q Consensus       297 ~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~----~~---------------------------  340 (451)
                      .     ..|-.-|+.+||    |.+..| ..|+++.+ +++.+.++.    +.                           
T Consensus       204 ~-----~~G~~gd~~~fSf~~~k~~~~g-eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (438)
T PRK15407        204 R-----MTGTFGDIATLSFYPAHHITMG-EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGY  277 (438)
T ss_pred             e-----eeeccCceEEEeCCCCCCcccc-CceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccc
Confidence            2     112223667665    666644 34888775 445443221    00                           


Q ss_pred             --------ccCCCCCcHHHHHHHHHHHHHhcChHHH-----HH---HHhCCCC-cce--ec-cc-ce--eEEEEecC---
Q 013008          341 --------HGSTFAGSPLVCNAAIAVLDKISNPAFL-----AS---KLARNPH-VKD--VR-GL-GL--IIGIEFDV---  394 (451)
Q Consensus       341 --------~~~t~~~~~~~~aaa~aal~~~~~~~~~-----~~---~~~~~~~-~~~--v~-g~-G~--~~~~~~~~---  394 (451)
                              .+..+..+.+.++.++.-|+.+++..-.     +.   .++.++. +..  .. +. ..  ++.+.++.   
T Consensus       278 ~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  357 (438)
T PRK15407        278 DHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAG  357 (438)
T ss_pred             cccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCC
Confidence                    1222345677788888888765331111     11   2333331 111  11 11 12  22233321   


Q ss_pred             -ChHHHHHHHHHCCceeeec-----CC----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          395 -SATPVVDACRDSGLLVLTA-----GK----------------------GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       395 -~~~~~~~~l~~~Gv~~~~~-----~~----------------------~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                       ...++.+.|.++||-..+.     ..                      ...+.+-.....+++|++.+++.|+++++
T Consensus       358 ~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        358 FTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             CCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence             3578999999999854311     00                      01233433445689999999999999875

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.56  E-value=1.2e-12  Score=141.73  Aligned_cols=279  Identities=18%  Similarity=0.169  Sum_probs=178.5

Q ss_pred             HHHHHHHHhhccCCCeEEecCCHH----HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcC
Q 013008          142 QIELAKRLVACSFADRVFFSNTGT----EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR  217 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~v~~~~sG~----eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  217 (451)
                      ..++.++|+++++.+.|.|+++++    +|+..+++.   |.+.++..   .| ++++....-||.........|..   
T Consensus       570 ~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~---~~~~~Gd~---~r-~~vli~~~aH~sn~a~a~~~G~~---  639 (993)
T PLN02414        570 FEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRA---YHLSRGDH---HR-NVCIIPVSAHGTNPASAAMCGMK---  639 (993)
T ss_pred             HHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHH---HHhccCCC---CC-CEEEeCCCcCccCHHHHHHCCCE---
Confidence            568899999999999999998877    677777664   44321110   12 35666668899877665553322   


Q ss_pred             CCCcCCCCCeeEeeCC-----CHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008          218 SPFEPVMPGVNFVEYG-----NIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC  290 (451)
Q Consensus       218 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  290 (451)
                               +..++.+     |+++|++++++  +++++|++.-.++.+|...+    +++|.++|+++|+++++|-++.
T Consensus       640 ---------vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~  706 (993)
T PLN02414        640 ---------IVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM  706 (993)
T ss_pred             ---------EEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH
Confidence                     2223221     89999999984  46888888777777777666    9999999999999999999984


Q ss_pred             CCCcccccccccccCCCcceeee--ccccc-----CCcccccccccHHHHhhccCCC-----------c---cCCCC---
Q 013008          291 GLGRTGYLWAHEHYGIFPDIMTL--AKPLA-----GGLPIGAALVTEKVASAINYGD-----------H---GSTFA---  346 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~~pdi~t~--sK~lg-----~G~~iG~v~~~~~i~~~~~~~~-----------~---~~t~~---  346 (451)
                       .+..+.   ..-..+..|++++  .|+|+     ||-.+|++.++++++..+....           .   .+|.+   
T Consensus       707 -~a~~~l---~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~  782 (993)
T PLN02414        707 -NAQVGL---TSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAP  782 (993)
T ss_pred             -HhccCc---CCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchh
Confidence             111111   1111345788877  48775     2466899988988877653210           0   12322   


Q ss_pred             -CcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccce---eEEEEec-------CChHHHHH
Q 013008          347 -GSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGL---IIGIEFD-------VSATPVVD  401 (451)
Q Consensus       347 -~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~---~~~~~~~-------~~~~~~~~  401 (451)
                       ++.+.+.++...+..+-.+++.+.              +.+.++ +......|.   -+.+.+.       ....++.+
T Consensus       783 ~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~-~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~k  861 (993)
T PLN02414        783 WGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYP-VLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAK  861 (993)
T ss_pred             hhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCC-ccccCCCCCeeeeEEEeccccccccCCCHHHHHH
Confidence             333444455555555544544221              222222 111111222   1122222       34578999


Q ss_pred             HHHHCCceeeecC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          402 ACRDSGLLVLTAG--KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       402 ~l~~~Gv~~~~~~--~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +|++.|+......  ..+.+|+.|.-..+++|||+++++|.++.+++++
T Consensus       862 rL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~  910 (993)
T PLN02414        862 RLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAD  910 (993)
T ss_pred             HHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999998764321  1367999999999999999999999999988875

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.54  E-value=1.2e-13  Score=121.40  Aligned_cols=165  Identities=24%  Similarity=0.220  Sum_probs=113.8

Q ss_pred             HHHHHHHHhhcc--CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~--~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..++.+++++.+  +.+++++++||++|+..+++.++.           ++++|++.++.||+.........+...... 
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v-   69 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG-----------PGDEVIVDANGHGSRYWVAAELAGAKPVPV-   69 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC-----------CCCEEEEeecccceehhhHHHhcCCEEEEe-
Confidence            357888899998  788999999999999999998762           478899999999988632222222111110 


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                        +.......  ..|.+.+++.....+++++++++.++++|...+    +++|+++|+++|+++|+||+|.++...... 
T Consensus        70 --~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-  140 (170)
T cd01494          70 --PVDDAGYG--GLDVAILEELKAKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG-  140 (170)
T ss_pred             --ccCCCCcc--chhhhhhhhccccCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc-
Confidence              10000000  012235555444568899999999888887766    699999999999999999999876443322 


Q ss_pred             cccccCCCcceeeec--ccccCCccccccccc
Q 013008          300 AHEHYGIFPDIMTLA--KPLAGGLPIGAALVT  329 (451)
Q Consensus       300 ~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~  329 (451)
                       .......+|+++.|  |.+++ .++|+++++
T Consensus       141 -~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         141 -VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             -cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence             11223458888777  99987 778887653

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.53  E-value=2e-13  Score=122.15  Aligned_cols=272  Identities=18%  Similarity=0.246  Sum_probs=170.6

Q ss_pred             HHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC
Q 013008          143 IELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF  220 (451)
Q Consensus       143 ~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  220 (451)
                      .++...++.--+  .|.+.+..|..|-+.+.+|+.+.          +++++|+...|+|.-++..+.. .+.....   
T Consensus        72 k~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~----------PGkeKIl~cPPtysMY~v~A~i-Nd~eVvk---  137 (375)
T KOG0633|consen   72 KRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCD----------PGKEKILDCPPTYSMYVVDAAI-NDAEVVK---  137 (375)
T ss_pred             chhhhhcccCCCCCccceEEecCcHHHHHHHHhheec----------CCccceeecCCcceeEEEEeec-CCceEEE---
Confidence            345555554444  78999999999999999998873          2569999999999766543322 1111111   


Q ss_pred             cCCCCCeeEeeCCCHHHHHHhcCC-CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          221 EPVMPGVNFVEYGNIEATRKLIQP-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       221 ~~~~~~~~~~~~~d~~~le~~l~~-~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                      .|+.+++..    |.+++.+.++. ..++++++.+..+++|... ..+.+..|.+.-+  +.++++||+|-.|.  |...
T Consensus       138 vpl~pdF~l----nvdai~evl~~ds~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p~--nglVVvDEAYidFs--g~~S  208 (375)
T KOG0633|consen  138 VPLNPDFSL----NVDAIAEVLELDSKIKCIFLTSPGNPTGSII-KEDDILKILEMPD--NGLVVVDEAYIDFS--GVES  208 (375)
T ss_pred             ecCCCCccc----cHHHHHHHHhccccceEEEEcCCCCCCcccc-cHHHHHHHHhCCC--CcEEEEeeeeEeec--cccc
Confidence            133333322    78899888883 4677777776666666654 5555666665443  78999999998873  3222


Q ss_pred             cccccCCCccee---eeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----hcC--hHHH
Q 013008          300 AHEHYGIFPDIM---TLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISN--PAFL  368 (451)
Q Consensus       300 ~~~~~~~~pdi~---t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~--~~~~  368 (451)
                      ...+-.-.|+++   ||||++| +|+|+|+...+.++.+.+....  ..|+-+.++..+|++|+.-     ++.  +.+.
T Consensus       209 ~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K--aPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv  286 (375)
T KOG0633|consen  209 RMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK--APYNISVAGSVAALAALSDSNGKKMEDVRDAIV  286 (375)
T ss_pred             cchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc--CCccccchhHHHHHHhcCcccchHHHHHHHHHH
Confidence            222223346665   7899999 6999999999999988876443  3566666777777777762     111  1111


Q ss_pred             HH------HHhCCCCcceecc--cceeEEEEecC----ChHHHHH-HHHHCCceeeecCC----CCEEEEeCCCCCCHHH
Q 013008          369 AS------KLARNPHVKDVRG--LGLIIGIEFDV----SATPVVD-ACRDSGLLVLTAGK----GNVVRLVPPLIISEQE  431 (451)
Q Consensus       369 ~~------~~~~~~~~~~v~g--~G~~~~~~~~~----~~~~~~~-~l~~~Gv~~~~~~~----~~~iri~~~~~~t~e~  431 (451)
                      ++      .+..+|.+.++.+  ...|+.+++..    .+..+.. .+-+.||.++-.+.    .+.+|++   ..|+|+
T Consensus       287 ~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit---vGt~Ee  363 (375)
T KOG0633|consen  287 RERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT---VGTPEE  363 (375)
T ss_pred             HHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE---cCCccc
Confidence            11      2334454444333  13455566521    1233333 33367999886543    3568886   447788


Q ss_pred             HHHHHHHHHHH
Q 013008          432 LDQAVEILCKT  442 (451)
Q Consensus       432 i~~~l~~l~~~  442 (451)
                      -+.+++.|+++
T Consensus       364 ntvL~k~~K~~  374 (375)
T KOG0633|consen  364 NTVLMKCLKQF  374 (375)
T ss_pred             chHHHHHHHhh
Confidence            88888888765

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.53  E-value=6.9e-13  Score=128.52  Aligned_cols=199  Identities=18%  Similarity=0.248  Sum_probs=135.2

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHH---HHHHHHHHhhccC--CCeEEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIP---QIELAKRLVACSF--ADRVFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~---~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~  170 (451)
                      .-|+|..+      .|-.+|.|.+|+.+.+..+...  +..+....   .++-++.++++.+  ..+|+||+++||++.+
T Consensus        44 ~vyld~~a------t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl  117 (428)
T KOG1549|consen   44 PVYLDNQA------TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL  117 (428)
T ss_pred             cEEEecCc------CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence            46788655      5568999999999987764222  12122222   3445556677776  4459999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCC
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG  245 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~  245 (451)
                      +++-.-.+.+. +     .+..||.++..| .+...++...-...         ..+.++|.+     |++.+++.|++ 
T Consensus       118 vl~~v~~~~~~-~-----~~k~iitl~~eH-~~v~~s~~~l~~~g---------~~Vt~lpv~~~~~~d~~~~~~~i~~-  180 (428)
T KOG1549|consen  118 VLKGVARFFGD-K-----TKKHIITLQTEH-PCVLDSCRALQEEG---------LEVTYLPVEDSGLVDISKLREAIRS-  180 (428)
T ss_pred             HHHHhhccccc-c-----ccceEEEecccC-cchhHHHHHHHhcC---------eEEEEeccCccccccHHHHHHhcCC-
Confidence            99965433221 0     122667666554 44433332211111         223344433     78999999976 


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccC-Ccc
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAG-GLP  322 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~-G~~  322 (451)
                      ++.+|.++.++++.|...|    +++|.++|+++++.+++|-+|. .   |+. ..+--.+.+|+.+++  |.+|. |  
T Consensus       181 ~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-v---G~i-~vDV~eln~D~~s~s~HK~ygp~~--  249 (428)
T KOG1549|consen  181 KTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-V---GKI-PVDVQELNADFLSISAHKIYGPPG--  249 (428)
T ss_pred             CceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh-c---CCc-cccHHHcCchheeeecccccCCCc--
Confidence            7999999999999999999    9999999999999999999995 4   331 234445678988877  88874 4  


Q ss_pred             cccccccH
Q 013008          323 IGAALVTE  330 (451)
Q Consensus       323 iG~v~~~~  330 (451)
                      +|++.+++
T Consensus       250 iGaLYvr~  257 (428)
T KOG1549|consen  250 IGALYVRR  257 (428)
T ss_pred             ceEEEEcc
Confidence            88888775

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.51  E-value=1.1e-11  Score=124.91  Aligned_cols=316  Identities=12%  Similarity=0.001  Sum_probs=186.6

Q ss_pred             CCHHHHHHHHHHHhhc-ccc-cCCCCCHHHHHHHHHHhhccCC----CeEEe--cCCHHHHHHHHHHHHHHHhhhc---C
Q 013008          115 GDADWIKAVVDQANVL-THV-SNMYYSIPQIELAKRLVACSFA----DRVFF--SNTGTEANEAAIKFARKFQRHS---N  183 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~-~~~-~~~~~~~~~~~l~~~l~~~~~~----e~v~~--~~sG~eA~~~al~~a~~~~~~~---~  183 (451)
                      .+|++.+++.+.+... .+. +.+.......+..+++++.++.    +.+.+  |+||||||..|+..++......   .
T Consensus        53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~  132 (431)
T TIGR01788        53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA  132 (431)
T ss_pred             CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5788999988888643 221 1111224466777888888873    35655  7999999999998887432110   0


Q ss_pred             CCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008          184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY  262 (451)
Q Consensus       184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~  262 (451)
                      +..  .....|+....-|-+...+....+...   ...|..++ ...    |+++|+++|++ ++.+|++.-.+++.|.+
T Consensus       133 g~~--~~~~~ii~s~~~H~sv~ka~~~lg~~v---~~i~~d~~~~~v----d~~~L~~~i~~-~t~lV~~t~g~t~tG~i  202 (431)
T TIGR01788       133 GKP--TDKPNLVMGSNVQVCWEKFARYFDVEL---REVPMDPGRYVI----DPEQVVEAVDE-NTIGVVCILGTTYTGEY  202 (431)
T ss_pred             CCC--CCCcEEEEcCcchHHHHHHHHHcCcee---EEEecCCCceee----CHHHHHHHHhh-CCeEEEEEeCCCCCccc
Confidence            000  012356666666766554443322111   01122221 111    78999999975 46778888888888998


Q ss_pred             ccCHHHHHHHHHHHHHh------CCEEEEeccccCCCc---ccc-cccccccCCCcceeeec--ccccCCcccccccccH
Q 013008          263 SATKEFLQFLRDACDDA------GALLVFDEVQCGLGR---TGY-LWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE  330 (451)
Q Consensus       263 ~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr---~G~-~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~  330 (451)
                      .|    +++|.++|+++      |+++++|-+|.|+-.   .++ .+.+.  ....|.++++  |.+.+...+|+++.++
T Consensus       203 dp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s~HK~~~~P~g~G~l~~r~  276 (431)
T TIGR01788       203 ED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVSGHKYGLVYPGVGWVIWRD  276 (431)
T ss_pred             CC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEECchhccCCCCCcEEEEEeC
Confidence            88    99999999999      999999999986421   122 11111  1246778887  6543447788888765


Q ss_pred             H--HHhhccCC--Cc-----cCCCCCcH--HHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceec--cc
Q 013008          331 K--VASAINYG--DH-----GSTFAGSP--LVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVR--GL  384 (451)
Q Consensus       331 ~--i~~~~~~~--~~-----~~t~~~~~--~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~--g~  384 (451)
                      +  +.+.+...  ..     ..++.++.  ....+....|..+...++.+.             .++..|.+.-+.  ..
T Consensus       277 ~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~  356 (431)
T TIGR01788       277 EEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSG  356 (431)
T ss_pred             hHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCC
Confidence            3  32332110  00     11222221  122333444444433333322             233445333222  23


Q ss_pred             ceeEEEEec------CChHHHHHHHHHCCceee----ecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          385 GLIIGIEFD------VSATPVVDACRDSGLLVL----TAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       385 G~~~~~~~~------~~~~~~~~~l~~~Gv~~~----~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..++.|.+.      .+..++.+.|.++|+.+.    |..-  ...+|+.....++++.++++++.|.+++.++
T Consensus       357 ~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       357 IPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             ceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            445555553      245678999999998642    2211  1357988877889999999999999998765

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK04311 selenocysteine synthase; Provisional

Probab=99.50  E-value=1.2e-11  Score=125.33  Aligned_cols=297  Identities=16%  Similarity=0.096  Sum_probs=172.2

Q ss_pred             CCHHHHHHHHHHHhhccccc-C---CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVS-N---MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~-~---~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      -++++.+++.+.+..+.... .   .........+++.++++++.+.++++++|+.|+..++..+.            ++
T Consensus        98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l~------------~G  165 (464)
T PRK04311         98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVLLALNALA------------AG  165 (464)
T ss_pred             CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhC------------CC
Confidence            46889999998887643110 0   01123356889999999998889999999999998886532            57


Q ss_pred             ceEEEEcC-Ccc-CChhh---hhhccCCCCcCCCCcCCCCCeeEeeC---CCHHHHHHhcCCCCeEEEEEccccCC--CC
Q 013008          191 TEFVSFTN-SFH-GRTMG---ALALTSKEHYRSPFEPVMPGVNFVEY---GNIEATRKLIQPGKTAAVFVEPIQGE--GG  260 (451)
Q Consensus       191 ~~ii~~~~-~yh-g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~aavi~ep~~~~--~G  260 (451)
                      ++||+.+. .|| |....   .+...|            ..+.+++.   .+++++++++.+ ++++|+++...+.  .|
T Consensus       166 deVIvs~~e~~~~ggs~~i~~~~~~~G------------~~l~~v~~~~~t~~~dle~aI~~-~TklV~~vh~sN~~i~G  232 (464)
T PRK04311        166 KEVIVSRGELVEIGGAFRIPDVMRQAG------------ARLVEVGTTNRTHLRDYEQAINE-NTALLLKVHTSNYRIEG  232 (464)
T ss_pred             CEEEEcchhhhhcCcchhhHHHHHHCC------------cEEEEECCCCCCCHHHHHHhcCc-cCeEEEEEcCCCccccc
Confidence            88998876 342 21110   111111            11223332   368899999975 4667666654332  33


Q ss_pred             --ccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc---c---cccccccccCCCcceeeec--ccccCCcccccccccH
Q 013008          261 --IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR---T---GYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE  330 (451)
Q Consensus       261 --~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr---~---G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~  330 (451)
                        ..++    +++|.++|++||+++|+|....-++-   .   +.....+......|++++|  |.++|. ..|++++++
T Consensus       233 ~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~  307 (464)
T PRK04311        233 FTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGKK  307 (464)
T ss_pred             cCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEcH
Confidence              3345    99999999999999999995211211   1   1111122223468999988  999864 478888999


Q ss_pred             HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC------------------hHHHHH------HHhCCC--C--ccee-
Q 013008          331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN------------------PAFLAS------KLARNP--H--VKDV-  381 (451)
Q Consensus       331 ~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~------------------~~~~~~------~~~~~~--~--~~~v-  381 (451)
                      ++++.++.......+...-+..++..++|....+                  +...++      .++.++  .  +..+ 
T Consensus       308 ~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~  387 (464)
T PRK04311        308 ELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVP  387 (464)
T ss_pred             HHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEE
Confidence            9988776322222222233444444445542211                  111111      222221  1  1111 


Q ss_pred             ----ccccee-------EEEEec---CChHHHHHHHHHC--CceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          382 ----RGLGLI-------IGIEFD---VSATPVVDACRDS--GLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       382 ----~g~G~~-------~~~~~~---~~~~~~~~~l~~~--Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                          -|.|.+       +.+.++   ....++.+.|++-  .|+.+.. . +.+.+-+ -++.++|++.++++|.+++.
T Consensus       388 ~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~~-~-~~~~ld~-r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        388 SFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRIE-D-GRLLLDL-RTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             ccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEEE-C-CEEEEEe-CcCCHHHHHHHHHHHHHHhh
Confidence                122332       223332   2467788888763  4555432 2 4455553 36688999999999988763

>PLN03032 serine decarboxylase; Provisional

Probab=99.50  E-value=1.3e-11  Score=121.76  Aligned_cols=267  Identities=17%  Similarity=0.145  Sum_probs=164.4

Q ss_pred             HHHHHHHHhhccC--CCeE--EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcC
Q 013008          142 QIELAKRLVACSF--ADRV--FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR  217 (451)
Q Consensus       142 ~~~l~~~l~~~~~--~e~v--~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  217 (451)
                      ..++.+++++.++  .+.+  +||+||||||..|+..+|.+.         ++ .+++....-|-+..-+....+...  
T Consensus        68 e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~---------~~-~~vi~s~~~H~Sv~kaa~~lg~~~--  135 (374)
T PLN03032         68 EVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVF---------PD-GILYASRESHYSVFKAARMYRMEA--  135 (374)
T ss_pred             HHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhC---------CC-cEEEeCCCceeHHHHHHHHcCCCC--
Confidence            6677788888887  3444  999999999999999988542         12 367778888877766654433221  


Q ss_pred             CCCcCCCCCeeEeeCCCHHHHHHhcCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC-----CEEEEecccc
Q 013008          218 SPFEPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG-----ALLVFDEVQC  290 (451)
Q Consensus       218 ~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g-----~llI~DEv~t  290 (451)
                       ...|..+....    |+++|+++|+++  .+.+|++.-.+++.|.+-|    +++|.++|++||     +++++|-++.
T Consensus       136 -~~V~~d~~g~i----d~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~g  206 (374)
T PLN03032        136 -VKVPTLPSGEI----DYDDLERALAKNRDKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALF  206 (374)
T ss_pred             -eEeeeCCCCcC----cHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccch
Confidence             01122221111    899999999742  4667777666777888877    999999999997     5899999996


Q ss_pred             CCCccc-----ccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCC-----CccCCCCCc--HHHHHHHH
Q 013008          291 GLGRTG-----YLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG-----DHGSTFAGS--PLVCNAAI  356 (451)
Q Consensus       291 g~gr~G-----~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~--~~~~aaa~  356 (451)
                      |+ ..-     ..+.+   ....|.++++  |.++...++|+++.+++..+.+...     ..-.|..++  ....++..
T Consensus       207 g~-~~p~~~~~~~~~~---~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w  282 (374)
T PLN03032        207 GL-MMPFVSRAPEVTF---RKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLW  282 (374)
T ss_pred             hh-hhhccCCCcccCC---CcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHH
Confidence            53 110     01111   1247878877  6555457889999988776655321     111234343  34556666


Q ss_pred             HHHHHhcChHHHHH-------------HHhCCCCcceecccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeC
Q 013008          357 AVLDKISNPAFLAS-------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP  423 (451)
Q Consensus       357 aal~~~~~~~~~~~-------------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~  423 (451)
                      ++|..+-.+++.+.             .++..+......+..+.+.|.  .+..+   . ..+|..+.+..  +.+++..
T Consensus       283 ~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~V~f~--~~~~~---~-~~~~w~l~~~~--~~~hi~v  354 (374)
T PLN03032        283 YTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSSTVVFE--RPMDE---A-FIKKWQLACEG--DIAHVVV  354 (374)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCCceEEEEc--CCCcH---h-HhheeeecccC--CEEEEEE
Confidence            77777666655444             112222111122233333222  22111   1 23576665433  4688877


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 013008          424 PLIISEQELDQAVEILCK  441 (451)
Q Consensus       424 ~~~~t~e~i~~~l~~l~~  441 (451)
                      ...++++.+|++++.|++
T Consensus       355 m~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        355 MPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             CCCCCHHHHHHHHHHHhc
Confidence            777889999999988764

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.49  E-value=2.5e-11  Score=130.14  Aligned_cols=281  Identities=17%  Similarity=0.193  Sum_probs=176.8

Q ss_pred             HHHHHHHHhhccCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC
Q 013008          142 QIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF  220 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~-v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  220 (451)
                      ..++.++|++++|.+. .++.++|+.|...++.++|.|+..++..   .|+ +++...+-||+...+....|..      
T Consensus       532 i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~---~R~-~vlip~saHgtnPasa~~~G~~------  601 (939)
T TIGR00461       532 IAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGEN---HRN-ICLIPVSAHGTNPASAAMAGMQ------  601 (939)
T ss_pred             HHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCC---CCC-EEEEEccccCcCHHHHHHCCCE------
Confidence            6789999999999664 4556778888888898899887554432   244 4445567788876554443321      


Q ss_pred             cCCCCCeeEeeCC-----CHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC-C
Q 013008          221 EPVMPGVNFVEYG-----NIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-L  292 (451)
Q Consensus       221 ~~~~~~~~~~~~~-----d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-~  292 (451)
                            ++.++.+     |+++|++++++  .++++|++.-.+.. |.+.++   +++|.++|+++|.++++|-++.. .
T Consensus       602 ------Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst~-G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al  671 (939)
T TIGR00461       602 ------VVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPSTH-GVFEPT---IQHACDIVHSFGGQVYLDGANMNAQ  671 (939)
T ss_pred             ------EEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCcC-ceeccc---HHHHHHHHHHcCCEEEEEecChhhC
Confidence                  2223321     89999999973  46777777554444 544332   89999999999999999999853 2


Q ss_pred             CcccccccccccCCCcceeeec--cccc-----CCcccccccccHHHHhhccCCC----------------ccCCCCCcH
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLA--KPLA-----GGLPIGAALVTEKVASAINYGD----------------HGSTFAGSP  349 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~s--K~lg-----~G~~iG~v~~~~~i~~~~~~~~----------------~~~t~~~~~  349 (451)
                      +..     ...-....|+++++  |+|+     ||-.+|++.+++++...+....                ....+.++.
T Consensus       672 ~~l-----~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a  746 (939)
T TIGR00461       672 VGL-----TSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSA  746 (939)
T ss_pred             CCC-----CCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcH
Confidence            111     11112457888875  9887     4567789988887665442110                011133444


Q ss_pred             HHHHHHHHHHHHhcChHHHHH----------HHhCC---CCcceecc-cce-e--EEEEec-------CChHHHHHHHHH
Q 013008          350 LVCNAAIAVLDKISNPAFLAS----------KLARN---PHVKDVRG-LGL-I--IGIEFD-------VSATPVVDACRD  405 (451)
Q Consensus       350 ~~~aaa~aal~~~~~~~~~~~----------~~~~~---~~~~~v~g-~G~-~--~~~~~~-------~~~~~~~~~l~~  405 (451)
                      +.+..+...|..+-.+++.+.          +.+++   ..+. .++ .|. +  +.+++.       ....++.++|++
T Consensus       747 ~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~~~~l-~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d  825 (939)
T TIGR00461       747 SILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDHYPIL-FVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQD  825 (939)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhccCccc-ccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHh
Confidence            444555555665544444332          22222   1111 111 122 1  223332       356889999999


Q ss_pred             CCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          406 SGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       406 ~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      .|+.......  .+.+.+.|.-..+++|||++++++.+..+++++
T Consensus       826 ~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~~  870 (939)
T TIGR00461       826 YGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEINA  870 (939)
T ss_pred             CCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence            9987543221  136788889999999999999999988887765

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.49  E-value=3e-12  Score=129.22  Aligned_cols=164  Identities=18%  Similarity=0.156  Sum_probs=112.5

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +....++...++++++++..+.+..++++||+.|+.+++..+.           .++|+||+.+..|++.........  
T Consensus        63 Y~r~~~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll-----------~~Gd~VI~~~~~y~~t~~~~~~~l--  129 (437)
T PRK05613         63 YSRLTNPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLA-----------GAGDHIVTSPRLYGGTETLFLVTL--  129 (437)
T ss_pred             eeCccChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhc-----------CCCCEEEECCCccHHHHHHHHHHH--
Confidence            3445667788999999999988888888999999998887553           158899998888766522111100  


Q ss_pred             CCcCCCCcCCCCCeeEee-CCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          214 EHYRSPFEPVMPGVNFVE-YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                             ......+.+++ .+|++++++++.+ ++++|++|...++.|.+.+    +++|.++|+++|+++|+|.+++ .
T Consensus       130 -------~~~Gi~v~~vd~~~d~e~l~~~l~~-~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~  196 (437)
T PRK05613        130 -------NRLGIEVTFVENPDDPESWQAAVQP-NTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-T  196 (437)
T ss_pred             -------HhcCeEEEEECCCCCHHHHHHhCCc-cCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-c
Confidence                   01112344554 3489999999975 4778888877666677777    9999999999999999999984 2


Q ss_pred             CcccccccccccCCCcceeeec--ccccC-Cccc-ccccc
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLA--KPLAG-GLPI-GAALV  328 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~s--K~lg~-G~~i-G~v~~  328 (451)
                      |..   .....+|  .|++++|  |.++| |-.+ |.++.
T Consensus       197 g~~---~~p~~~G--aDivv~S~~K~l~G~gd~~gG~vv~  231 (437)
T PRK05613        197 AAL---VRPLELG--ADVVVASLTKFYTGNGSGLGGVLID  231 (437)
T ss_pred             ccc---cChHHhC--CCEEEeeccceecCCCcceeEEEEe
Confidence            211   1111234  5777654  98886 5333 44443

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.49  E-value=4.8e-12  Score=125.63  Aligned_cols=227  Identities=12%  Similarity=0.177  Sum_probs=145.0

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .|....++...+|+++++++.+.+.++.++||+.|+.+++..+.           .++|+||+....|.+........- 
T Consensus        57 ~Y~r~~~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all-----------~~GD~Vl~~~~~yg~t~~~~~~~~-  124 (384)
T PRK06434         57 IYTRWGNPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLI-----------KKGKRILSISDLYGQTFYFFNKVL-  124 (384)
T ss_pred             ceeCCCChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEecCccchHHHHHHHHH-
Confidence            34555677789999999999998899999999999999998654           168999998887755543221110 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                              ......+.+++.++.+.++  +++.++++|++|.+.++.+.+++    +++|.++|++++  +++|.++.. 
T Consensus       125 --------~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s-  187 (384)
T PRK06434        125 --------KTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFAS-  187 (384)
T ss_pred             --------HhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCC-
Confidence                    0111234555554445544  44556889999988777776666    999999999998  456999731 


Q ss_pred             CcccccccccccCCCcceeeec--ccccC-C-cccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLA--KPLAG-G-LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P  365 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~s--K~lg~-G-~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~  365 (451)
                      ...+     ...+...|++++|  |.++| | .-.|+++. ++++.+.++..........+|+.++.++.-|+.+..  +
T Consensus       188 ~~~~-----~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL~~R~~  262 (384)
T PRK06434        188 PYNQ-----NPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTLGLRME  262 (384)
T ss_pred             cccC-----CchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcHHHHHH
Confidence            1222     2234557888766  99976 4 55677766 456666554221122234467776666555543311  0


Q ss_pred             ------HHHHHHHhCCCCccee------------cccceeEEEEec
Q 013008          366 ------AFLASKLARNPHVKDV------------RGLGLIIGIEFD  393 (451)
Q Consensus       366 ------~~~~~~~~~~~~~~~v------------~g~G~~~~~~~~  393 (451)
                            ..+.+.++.+|.+..|            +|.|.++.|+++
T Consensus       263 r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~  308 (384)
T PRK06434        263 KHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR  308 (384)
T ss_pred             HHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence                  1111155667755432            356889999985

>PRK02769 histidine decarboxylase; Provisional

Probab=99.48  E-value=2.9e-11  Score=120.05  Aligned_cols=272  Identities=13%  Similarity=0.149  Sum_probs=169.3

Q ss_pred             HHHHHHHHHhhccCC--Ce--EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCc
Q 013008          141 PQIELAKRLVACSFA--DR--VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY  216 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~--e~--v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~  216 (451)
                      ...++.++++++++.  +.  .+||+||||||..|+..+|.+.         +++ .|+....-|.+..-+...-+....
T Consensus        66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~---------~~~-~ii~s~~~H~Sv~ka~~~lg~~~~  135 (380)
T PRK02769         66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELF---------PDG-TLYYSKDTHYSVSKIARLLRIKSR  135 (380)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhC---------CCc-EEEeCCCceehHHHHHHHcCCCCc
Confidence            356777788888872  33  5899999999999998888542         234 455556667666555443332211


Q ss_pred             CCCCcCCCCCeeEeeCCCHHHHHHhcCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC---CEEEEeccccC
Q 013008          217 RSPFEPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG---ALLVFDEVQCG  291 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g---~llI~DEv~tg  291 (451)
                      .   .+..+...    -|+++|++++++.  .+.+|++.-..++.|.+.|    +++|.++|++||   +++++|-+|.|
T Consensus       136 ~---V~~~~~g~----id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg  204 (380)
T PRK02769        136 V---ITSLPNGE----IDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSG  204 (380)
T ss_pred             e---eccCCCCc----CcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccc
Confidence            1   11111111    2899999999743  4677778778888898888    999999999998   69999999976


Q ss_pred             CCcc---c-ccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCC-----CccCCCCC--cHHHHHHHHHH
Q 013008          292 LGRT---G-YLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG-----DHGSTFAG--SPLVCNAAIAV  358 (451)
Q Consensus       292 ~gr~---G-~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~-----~~~~t~~~--~~~~~aaa~aa  358 (451)
                      +-..   . ..+.+.  . ..|.++++  |.+++..++|+++.+++..+.+.+.     ....|+.|  |....++..++
T Consensus       205 ~~~p~~~~~~~~d~~--~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~a  281 (380)
T PRK02769        205 MILPFVNNPPPFSFA--D-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAA  281 (380)
T ss_pred             eeecccCccccCCcc--C-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHH
Confidence            4111   0 011111  1 57888887  7665558899999988776655321     11123333  34566777788


Q ss_pred             HHHhcChHHHHH----------HHhCCC--Ccce-ecccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCC
Q 013008          359 LDKISNPAFLAS----------KLARNP--HVKD-VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPL  425 (451)
Q Consensus       359 l~~~~~~~~~~~----------~~~~~~--~~~~-v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~  425 (451)
                      |+.+..+++.+.          +.+++.  .+.. ..+....+.  |......+.     +|..+.+.+  ..+++....
T Consensus       282 L~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~--f~~~~~~~~-----~~w~l~~~~--~~~hi~~~~  352 (380)
T PRK02769        282 IRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVV--FPCPSERIW-----KKWHLATSG--NQAHIITMP  352 (380)
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEE--EcCCCHHHH-----hCeeEcccC--CEEEEEECC
Confidence            887766655443          111111  1111 122223333  322223332     676666543  468888888


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 013008          426 IISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .+++|.+|++++.|.+.+..
T Consensus       353 ~~~~~~~~~f~~dl~~~~~~  372 (380)
T PRK02769        353 HHNKQQIDSLIDELIFDLKN  372 (380)
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            88999999999999887763

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.48  E-value=1.3e-11  Score=131.45  Aligned_cols=279  Identities=16%  Similarity=0.168  Sum_probs=172.6

Q ss_pred             HHHHHHHHhhccCCCeEEecC-CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC
Q 013008          142 QIELAKRLVACSFADRVFFSN-TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF  220 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~v~~~~-sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  220 (451)
                      ..+|.+.+++++|.+.+.+.+ ||+.|..+++.+.|.|+..++..   .|++||+. .+-||.........|..      
T Consensus       545 i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~---~r~~vLIp-~saHgtNpasa~~~Gie------  614 (954)
T PRK12566        545 IDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQS---QRDICLIP-SSAHGTNPASAQMAGMR------  614 (954)
T ss_pred             HHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEec-ccccccCHHHHHHCCCE------
Confidence            568889999999988777776 89999989999999988766653   35555554 47777765543333221      


Q ss_pred             cCCCCCeeEeeC-----CCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          221 EPVMPGVNFVEY-----GNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       221 ~~~~~~~~~~~~-----~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                            ++.++.     -|+++|+++++  +.++++|++...+..++..    +.+++|.++|+++|+++++|-++. .+
T Consensus       615 ------Vv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e----~~V~eI~~iah~~Galv~vDgA~~-~a  683 (954)
T PRK12566        615 ------VVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYE----EGIREICEVVHQHGGQVYMDGANL-NA  683 (954)
T ss_pred             ------EEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceec----chHHHHHHHHHHcCCEEEEEeeCh-hh
Confidence                  222222     18999999996  3467777665544444322    339999999999999999999985 21


Q ss_pred             cccccccccccCCCcceeeec--cccc----CC-cccccccccHHHHhhccCCC-------------ccCCCCCcHHHHH
Q 013008          294 RTGYLWAHEHYGIFPDIMTLA--KPLA----GG-LPIGAALVTEKVASAINYGD-------------HGSTFAGSPLVCN  353 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~s--K~lg----~G-~~iG~v~~~~~i~~~~~~~~-------------~~~t~~~~~~~~a  353 (451)
                      -.+ .-...  .+..|+++++  |.|+    +| .-+|.+.+++++...+....             ......++.+...
T Consensus       684 ~~~-l~~Pg--~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~  760 (954)
T PRK12566        684 QVG-LARPA--DIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILP  760 (954)
T ss_pred             ccC-CCChh--hcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHH
Confidence            111 00111  2457888776  9875    23 55777777776665554210             1112223333334


Q ss_pred             HHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cce-e--EEEEec-------CChHHHHHHHHHCCc
Q 013008          354 AAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGL-I--IGIEFD-------VSATPVVDACRDSGL  408 (451)
Q Consensus       354 aa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~-~--~~~~~~-------~~~~~~~~~l~~~Gv  408 (451)
                      ++..-+..+-.+ +.+.              +.+.++.. . .+ .+. +  +.+.+.       .+..++.++|++.|+
T Consensus       761 ~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~-~-~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gi  837 (954)
T PRK12566        761 ISWMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVL-Y-RGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGF  837 (954)
T ss_pred             HHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCC-c-CCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCc
Confidence            444444443222 2221              22222211 1 21 111 1  222221       345779999999998


Q ss_pred             eeeecC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          409 LVLTAG--KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       409 ~~~~~~--~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ......  ..+.+|++|.-..+++|||+++++|.++.++++
T Consensus       838 hapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~  878 (954)
T PRK12566        838 HAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEIG  878 (954)
T ss_pred             EEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence            764221  136799999999999999999999999988865

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.47  E-value=2.5e-12  Score=124.44  Aligned_cols=196  Identities=16%  Similarity=0.146  Sum_probs=142.4

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +....++....|++.+++..+.+.++.++||..|+..|++.+.           +.+++||.++..|.|.......... 
T Consensus        71 Ysr~~nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~-----------~~g~~iV~~~~~Y~gT~~~l~~~~~-  138 (409)
T KOG0053|consen   71 YSRSGNPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLL-----------PAGDHIVATGDVYGGTLRILRKFLP-  138 (409)
T ss_pred             cccCCCCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhc-----------CCCCcEEEeCCCcccHHHHHHHHHH-
Confidence            3445566688899999999998889999999999999999777           2588999999999876433221111 


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                              .......+++.+|++.+++.+++ ++.+|++|.+-++...++.    +++|+++|+++|+++|+|+...+. 
T Consensus       139 --------~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p-  204 (409)
T KOG0053|consen  139 --------KFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP-  204 (409)
T ss_pred             --------HhCceeeeechhhHHHHHHhhcc-CceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc-
Confidence                    01123345666678888888876 7999999998777666565    999999999999999999998643 


Q ss_pred             cccccccccccCCCcceee--ecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHH
Q 013008          294 RTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLD  360 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~  360 (451)
                           ..++.+.+..||++  ..|.++| + +-.|.++.+ +++...+......-.+..+|+.|.-....++
T Consensus       205 -----~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglk  271 (409)
T KOG0053|consen  205 -----YNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLK  271 (409)
T ss_pred             -----cccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcc
Confidence                 12344445588885  5599998 4 677888886 7777766543333445567877766654444

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.47  E-value=2.8e-11  Score=122.32  Aligned_cols=194  Identities=14%  Similarity=0.054  Sum_probs=125.7

Q ss_pred             CCHHHHHHHHHHHhhccccc----CCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVS----NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      -++++.+++.+.++.+....    ..........+++.++++++.+..++++||+.|+..++..+.            ++
T Consensus        93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~------------~G  160 (454)
T TIGR00474        93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLA------------KG  160 (454)
T ss_pred             CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhC------------Cc
Confidence            57899999999887643110    011223367899999999998888889999999988885432            58


Q ss_pred             ceEEEEcCCc---cCChhh--hhhccCCCCcCCCCcCCCCCeeEeeC---CCHHHHHHhcCCCCeEEEEEccccC--CCC
Q 013008          191 TEFVSFTNSF---HGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEY---GNIEATRKLIQPGKTAAVFVEPIQG--EGG  260 (451)
Q Consensus       191 ~~ii~~~~~y---hg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~aavi~ep~~~--~~G  260 (451)
                      ++||+.+..+   .|....  .+...|            ..+.+++.   .|++++++++.+ ++++|+++...+  ..|
T Consensus       161 deVIvs~~e~v~~ggs~~i~~~~~~~G------------~~~~~v~~~~~~~l~dle~aI~~-~T~lv~~~h~sN~~~~G  227 (454)
T TIGR00474       161 KEVIVSRGELVEIGGSFRIPDVMEQSG------------AKLVEVGTTNRTHLKDYEDAITE-NTALLLKVHTSNYRIVG  227 (454)
T ss_pred             CEEEECCChhhhhcchhhHHHHHHHcC------------CEEEEeCCCCCCCHHHHHHhcCc-CCEEEEEEccCcccccC
Confidence            8898887663   232111  111111            12233333   478999999975 466666665433  234


Q ss_pred             --ccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc------ccccccccCCCcceeeec--ccccCCcccccccccH
Q 013008          261 --IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG------YLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE  330 (451)
Q Consensus       261 --~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G------~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~  330 (451)
                        ..++    +++|.++|++||+++|+|....-++-.+      ....++......|++++|  |.++|. ..|++++++
T Consensus       228 ~~~~~d----l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~G~i~g~~  302 (454)
T TIGR00474       228 FTEEVS----IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QAGIIVGKK  302 (454)
T ss_pred             CCCCCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eEEEEEECH
Confidence              3456    9999999999999999996321111111      111122223458999999  999764 368888999


Q ss_pred             HHHhhccC
Q 013008          331 KVASAINY  338 (451)
Q Consensus       331 ~i~~~~~~  338 (451)
                      ++++.++.
T Consensus       303 ~~i~~l~~  310 (454)
T TIGR00474       303 ELIERLKK  310 (454)
T ss_pred             HHHHhhhh
Confidence            88877653

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.46  E-value=5.7e-12  Score=125.86  Aligned_cols=291  Identities=13%  Similarity=0.022  Sum_probs=171.1

Q ss_pred             CCHH-HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecC-CHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 013008          115 GDAD-WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSN-TGTEANEAAIKFARKFQRHSNPDSKEP  189 (451)
Q Consensus       115 ~~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~-sG~eA~~~al~~a~~~~~~~~~~~~~~  189 (451)
                      .+|. |.+|+.+..-...|.+. -......+..+.++++++.   ++|+|++ |||++++.++..+.   .        +
T Consensus        23 ~~~~~v~~a~~~~~~~~~hr~~-~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~---~--------~   90 (378)
T PRK03080         23 KRPGWQLEALADALLGRSHRQK-PVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL---G--------A   90 (378)
T ss_pred             CChHHHHHHHHhhhcccCcCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC---C--------C
Confidence            3577 88888754321112111 1223366777778888872   3688876 89999999998653   1        1


Q ss_pred             CceEEEEcCCccCChhhhhh--ccCCCCcCCCCcCCCCCeeEe--eC---CCHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008          190 ATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFV--EY---GNIEATRKLIQPGKTAAVFVEPIQGEGGIY  262 (451)
Q Consensus       190 ~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~---~d~~~le~~l~~~~~aavi~ep~~~~~G~~  262 (451)
                      ++.+++. .+.||.......  ..+.           ..+..+  ++   .|++++    +.  .+.|.+..+...+|.+
T Consensus        91 ~~~~vi~-~g~f~~~~~~~~~~~~g~-----------~~v~~~~~~~g~~~d~~~i----~~--~~~V~~~h~~t~tG~~  152 (378)
T PRK03080         91 RRVDHLA-WESFGSKWATDVVKQLKL-----------EDPRVLEADYGSLPDLSAV----DF--DRDVVFTWNGTTTGVR  152 (378)
T ss_pred             CcceEEE-eCHHHHHHHHHHHhhcCC-----------CCceEeccCCCCCCCHhhc----CC--CCCEEEEecCCcccee
Confidence            2223333 456666433211  0111           011111  11   144443    22  2346666666677888


Q ss_pred             ccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCC
Q 013008          263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD  340 (451)
Q Consensus       263 ~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~  340 (451)
                      .|    +++|.+  ++||+++|+|-+++ +|..  ....+  +  .|++++|  |.|++...+|++..+++..+.+.+..
T Consensus       153 ~p----i~~I~~--~~~g~~~vVDa~qs-~G~~--pidv~--~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~  219 (378)
T PRK03080        153 VP----VARWIG--ADREGLTICDATSA-AFAL--PLDWS--K--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYT  219 (378)
T ss_pred             cc----chhhcc--ccCCCeEEEecccc-cccC--CCCHH--H--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhccc
Confidence            87    888888  78999999999986 5322  22222  2  4888766  98876556888999998887665321


Q ss_pred             ----------------------ccCCCCC-cHHHHHHHHHHHHHhcCh-HHH---HH----------HHhCCCCccee--
Q 013008          341 ----------------------HGSTFAG-SPLVCNAAIAVLDKISNP-AFL---AS----------KLARNPHVKDV--  381 (451)
Q Consensus       341 ----------------------~~~t~~~-~~~~~aaa~aal~~~~~~-~~~---~~----------~~~~~~~~~~v--  381 (451)
                                            ..+|.+. +..+..+..++|+.+.+. ++.   ++          .++..+.+...  
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~  299 (378)
T PRK03080        220 PARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVA  299 (378)
T ss_pred             CCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccC
Confidence                                  0122222 333445556778777543 221   22          22334422111  


Q ss_pred             --cc-cceeEEEEecC----ChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          382 --RG-LGLIIGIEFDV----SATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       382 --~g-~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                        .. .+.+..+.++.    ...++...|+++|+.+..++.   ++.+|+++....+++|++.+++.|++++++++.
T Consensus       300 ~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~  376 (378)
T PRK03080        300 DPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKA  376 (378)
T ss_pred             CccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence              11 12455665533    234567778888888765431   367999999999999999999999999988764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.46  E-value=8.6e-12  Score=123.93  Aligned_cols=290  Identities=20%  Similarity=0.207  Sum_probs=173.5

Q ss_pred             HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 013008          118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT  197 (451)
Q Consensus       118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~  197 (451)
                      +..+++.+.++....   ........+++++++++++.+.++.++||+.|+..|++++..          .++++||+..
T Consensus         6 e~~~~v~~~l~s~~~---~~~g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~----------~~gdeVi~p~   72 (363)
T PF01041_consen    6 EEIDAVLEVLRSGWL---STYGPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGL----------GPGDEVIVPA   72 (363)
T ss_dssp             HHHHHHHHHHHHTCC---SSSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTG----------GTTSEEEEES
T ss_pred             HHHHHHHHHHHhCCc---cCCCHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCC----------CcCceEecCC
Confidence            455667776665321   111456889999999999999999999999999999997431          1589999998


Q ss_pred             CCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHH
Q 013008          198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD  277 (451)
Q Consensus       198 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~  277 (451)
                      -+|+.........+..+.+.    ...+....   -|++.+++++.+ ++++|++-..+|..   ..    +++|.++|+
T Consensus        73 ~t~~~~~~ai~~~G~~pv~~----Di~~~~~~---id~~~~~~~i~~-~t~ai~~~h~~G~~---~d----~~~i~~~~~  137 (363)
T PF01041_consen   73 YTFPATASAILWAGAEPVFV----DIDPETLN---IDPEALEKAITP-KTKAILVVHLFGNP---AD----MDAIRAIAR  137 (363)
T ss_dssp             SS-THHHHHHHHTT-EEEEE-----BETTTSS---B-HHHHHHHHHT-TEEEEEEE-GGGB----------HHHHHHHHH
T ss_pred             CcchHHHHHHHHhccEEEEE----eccCCcCC---cCHHHHHHHhcc-CccEEEEecCCCCc---cc----HHHHHHHHH
Confidence            88876654444443332221    11111100   189999999975 56788877776653   33    999999999


Q ss_pred             HhCCEEEEeccccCCCcccccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccC---CC---------
Q 013008          278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINY---GD---------  340 (451)
Q Consensus       278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~---~~---------  340 (451)
                      +||++||.|-+|+ +|-.   +.-...|-.-|+.+||    |.++.| -.|+|+.+ +++.+.++.   ..         
T Consensus       138 ~~~i~lIeD~a~a-~g~~---~~g~~~G~~gd~~~fSf~~~K~i~~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~  212 (363)
T PF01041_consen  138 KHGIPLIEDAAQA-FGAR---YKGRPVGSFGDIAIFSFHPTKIITTG-EGGAVVTNDPELAERARALRNHGRSRDAFRRY  212 (363)
T ss_dssp             HTT-EEEEE-TTT-TT-E---ETTEETTSSSSEEEEESSTTSSS-SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTT
T ss_pred             HcCCcEEEccccc-cCce---eCCEeccCCCCceEecCCCCCCCcCC-CCeeEEecHHHHHHHhhhhhccCcCccccccc
Confidence            9999999999996 5321   1111223334777776    888643 23787775 566555432   11         


Q ss_pred             -----ccCCCCCcHHHHHHHHHHHHHhcChHHH--------HHHHhCCCCcceec--c-c--cee--EEEEecC----Ch
Q 013008          341 -----HGSTFAGSPLVCNAAIAVLDKISNPAFL--------ASKLARNPHVKDVR--G-L--GLI--IGIEFDV----SA  396 (451)
Q Consensus       341 -----~~~t~~~~~~~~aaa~aal~~~~~~~~~--------~~~~~~~~~~~~v~--g-~--G~~--~~~~~~~----~~  396 (451)
                           .+..+..+.+.++.+++-|+.+....-.        .+.++.++.+....  . .  ..+  +.+.++.    ..
T Consensus       213 ~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~r  292 (363)
T PF01041_consen  213 RHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADR  292 (363)
T ss_dssp             EESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTH
T ss_pred             cccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchH
Confidence                 1234556788888888878765332111        11444555332111  1 1  122  2333332    46


Q ss_pred             HHHHHHHHHCCceeeecCC---------------------------CCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          397 TPVVDACRDSGLLVLTAGK---------------------------GNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~~~~---------------------------~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      .++.+.|.++||-+.+...                           ...+.+-.....++++++++++.|+
T Consensus       293 d~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  293 DELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             HHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence            7899999999998764320                           0135555566789999999998874

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.46  E-value=2.7e-11  Score=132.04  Aligned_cols=286  Identities=14%  Similarity=0.158  Sum_probs=167.2

Q ss_pred             HHHHHHHHhhccCCCeEEecC-CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC
Q 013008          142 QIELAKRLVACSFADRVFFSN-TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF  220 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~v~~~~-sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  220 (451)
                      ..++.++|++++|.+.+.+.+ +|++|+..++.+++.|...++..   .+++|++. .+-|++...+....|.....   
T Consensus       544 i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~---~r~~vlis-~~aH~snp~sa~~~G~~vv~---  616 (954)
T PRK05367        544 IDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEG---HRDVCLIP-SSAHGTNPASAVMAGMKVVV---  616 (954)
T ss_pred             HHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCC---CCCEEEEE-chhhhhhHHHHHHCCCEEEE---
Confidence            567888999999977666655 67888878887788775433221   24445555 55677665554443322111   


Q ss_pred             cCCCCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc
Q 013008          221 EPVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL  298 (451)
Q Consensus       221 ~~~~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~  298 (451)
                      .+......    -|+++|++.+++  .++++|++.-....++...+    +++|.++|+++|+++++|.++.+ +-.+..
T Consensus       617 v~~d~~G~----iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~-al~~l~  687 (954)
T PRK05367        617 VACDENGN----IDLDDLRAKAEEHADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLDGANMN-AQVGLA  687 (954)
T ss_pred             ECCCCCCC----cCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEECcChh-hccCCC
Confidence            11111101    178999999974  25666655443333332245    99999999999999999999852 111110


Q ss_pred             ccccccCCCcceeeec--cccc-----CCcccccccccHHHHhhccCCCc--------cCCCCCcHHH----HHHHHHHH
Q 013008          299 WAHEHYGIFPDIMTLA--KPLA-----GGLPIGAALVTEKVASAINYGDH--------GSTFAGSPLV----CNAAIAVL  359 (451)
Q Consensus       299 ~~~~~~~~~pdi~t~s--K~lg-----~G~~iG~v~~~~~i~~~~~~~~~--------~~t~~~~~~~----~aaa~aal  359 (451)
                       ...  ....|+++++  |.|+     ||-.+|++.+++.+...+.....        .++....+.+    ...+...+
T Consensus       688 -~pg--~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi  764 (954)
T PRK05367        688 -RPG--DIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYI  764 (954)
T ss_pred             -Chh--hcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHH
Confidence             111  2347888776  9875     23557788887776655432110        1222223332    22233334


Q ss_pred             HHhcChHHHHH--------------HHhCCCCcceecc------cceeEEE-Eec----CChHHHHHHHHHCCceeeecC
Q 013008          360 DKISNPAFLAS--------------KLARNPHVKDVRG------LGLIIGI-EFD----VSATPVVDACRDSGLLVLTAG  414 (451)
Q Consensus       360 ~~~~~~~~~~~--------------~~~~~~~~~~v~g------~G~~~~~-~~~----~~~~~~~~~l~~~Gv~~~~~~  414 (451)
                      ..+-.+++.+.              +.+.++..  ..+      ...++.+ .++    ....++.++|.+.|+......
T Consensus       765 ~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~--~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~  842 (954)
T PRK05367        765 RMMGAEGLRQATEVAILNANYIAKRLKDHYPVL--YTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMS  842 (954)
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCcc--ccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecC
Confidence            43333433332              22222211  111      1122222 121    346789999999999875422


Q ss_pred             C--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          415 K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       415 ~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      .  .+.++++|.-..+++|||+++++|.+..+++++
T Consensus       843 ~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~  878 (954)
T PRK05367        843 FPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE  878 (954)
T ss_pred             CccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence            1  367999999999999999999999999888776

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.43  E-value=3.5e-11  Score=117.27  Aligned_cols=294  Identities=17%  Similarity=0.169  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      .+..+++.+.++.....    .-+.-.++++++++++|...++.++|||.|++.|++++- .         .++|.||+.
T Consensus        15 ~~e~~~v~~vl~sg~i~----~G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~-i---------g~GDeVI~p   80 (374)
T COG0399          15 EEELAAVQEVLKSGWLT----GGPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALA-I---------GPGDEVIVP   80 (374)
T ss_pred             hHHHHHHHHHHHcCCee----cChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcC-C---------CCCCEEEec
Confidence            44566777777653321    133467899999999999999999999999999999544 1         168999999


Q ss_pred             cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHH
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA  275 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l  275 (451)
                      .-+|-......+..+..+.+.        ++..-.+| |++.+|++|.+. ++|||.--..|..   +.    +++|.+|
T Consensus        81 s~TfvATan~i~~~Ga~PVFv--------Did~~T~nid~~~ie~aIt~~-tKAIipVhl~G~~---~d----m~~i~~l  144 (374)
T COG0399          81 SFTFVATANAVLLVGAKPVFV--------DIDPDTLNIDPDLIEAAITPR-TKAIIPVHLAGQP---CD----MDAIMAL  144 (374)
T ss_pred             CCchHHHHHHHHHcCCeEEEE--------ecCCcccCCCHHHHHHHcccC-CeEEEEehhccCC---CC----HHHHHHH
Confidence            888855443333333332221        11111122 899999999864 7777776666653   34    9999999


Q ss_pred             HHHhCCEEEEeccccCCCcccccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccCC----C------
Q 013008          276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG----D------  340 (451)
Q Consensus       276 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~----~------  340 (451)
                      |++||++||.|-+|+ +|-.=+   -...|---|+.+||    |.++.| -.|+++.+ +++.+.++..    .      
T Consensus       145 a~~~~l~vIEDaAqa-~Ga~y~---gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~  219 (374)
T COG0399         145 AKRHGLPVIEDAAQA-HGATYK---GKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVF  219 (374)
T ss_pred             HHHcCCeEEEEcchh-ccCeec---CcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCccc
Confidence            999999999999985 542211   11223334566665    888865 55888875 5677665321    1      


Q ss_pred             ------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------HHhCCCCc-ceecccce-----eEEEEec---CChH
Q 013008          341 ------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------KLARNPHV-KDVRGLGL-----IIGIEFD---VSAT  397 (451)
Q Consensus       341 ------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------~~~~~~~~-~~v~g~G~-----~~~~~~~---~~~~  397 (451)
                            .++.+..+-+.+|.+++-|+.+++....++        .++.++.+ ......+.     ++.+.++   ....
T Consensus       220 ~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~  299 (374)
T COG0399         220 KYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEEGISRD  299 (374)
T ss_pred             cceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCCCCCHH
Confidence                  122233345566666666665533211111        23433311 11122221     1112222   2346


Q ss_pred             HHHHHHHHCCce----eeecC--------------C--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          398 PVVDACRDSGLL----VLTAG--------------K--------GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       398 ~~~~~l~~~Gv~----~~~~~--------------~--------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .+.+.|.++||.    ..|..              .        ...+.+-....++++++++.++.|.+++..
T Consensus       300 ~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         300 ALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             HHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence            788889888654    33311              0        124566555678999999999999998753

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.40  E-value=1.8e-11  Score=122.87  Aligned_cols=280  Identities=11%  Similarity=0.070  Sum_probs=152.8

Q ss_pred             HHHHHHHHhhccCCC---eEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-Cc
Q 013008          142 QIELAKRLVACSFAD---RVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HY  216 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e---~v~~~~sG~-eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~  216 (451)
                      ..++++.+++.+|..   .++++++|+ .++.+++.+++...        .+++.||+..-+ |-++..++...|.. .+
T Consensus       107 ~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~--------~~gd~VI~p~~t-h~S~~kAi~~~G~~pv~  177 (444)
T TIGR03531       107 TNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKR--------PKAKYVIWPRID-QKSCIKAISTAGFEPRV  177 (444)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcC--------CCCCEEEEECcC-hHHHHHHHHHcCCeEEE
Confidence            567788888888854   799999999 68888887665211        136778887766 66665655554432 11


Q ss_pred             CCCCcCCCCCeeEeeCCCHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          217 RSPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                      ... . ..++. +.  -|+++|+++|.+   +.+.+|+..|..+..|...+    +++|.++|++||+++|+|++|... 
T Consensus       178 Vd~-~-~d~~~-~~--iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~la~k~gI~lIvDaAyg~~-  247 (444)
T TIGR03531       178 IET-V-LDGDE-LT--TDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKICANYDIPHIVNNAYGLQ-  247 (444)
T ss_pred             eee-e-ecCcC-CC--cCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHHHHHcCCEEEEECcCcCc-
Confidence            100 0 00110 00  189999999974   45666666665443333333    999999999999999999999631 


Q ss_pred             ccccc-ccccccCC-Ccceeee--cccccCCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHH
Q 013008          294 RTGYL-WAHEHYGI-FPDIMTL--AKPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL  368 (451)
Q Consensus       294 r~G~~-~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~  368 (451)
                      ..-.. ........ ..|++++  .|.+......|.++. ++++++.+...... ... +..++.+..+++.. ..+.+.
T Consensus       248 ~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g-~~~-~s~~~~~~~~ll~~-G~~g~~  324 (444)
T TIGR03531       248 SNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPG-RAS-ASPSLDVLITLLSL-GSKGYL  324 (444)
T ss_pred             ChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccC-CCC-ChHHHHHHHHHHHh-CHHHHH
Confidence            11000 00011112 2466655  588864212455556 67888777643222 222 23344444444432 122221


Q ss_pred             HH-----------------HHhCCC-CcceecccceeEEEEec----CChHHHHHHHHHCCce----eeecC--------
Q 013008          369 AS-----------------KLARNP-HVKDVRGLGLIIGIEFD----VSATPVVDACRDSGLL----VLTAG--------  414 (451)
Q Consensus       369 ~~-----------------~~~~~~-~~~~v~g~G~~~~~~~~----~~~~~~~~~l~~~Gv~----~~~~~--------  414 (451)
                      +.                 +.+++. .+-..+.--.-+++.++    .+...+-..|..++|-    +.++.        
T Consensus       325 ~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~  404 (444)
T TIGR03531       325 ELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCE  404 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEECCEE
Confidence            11                 112222 11111111112233332    3456677778777652    22221        


Q ss_pred             ---CC--------CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          415 ---KG--------NVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       415 ---~~--------~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                         .+        .++-+.....++++|||.++++|++++
T Consensus       405 ~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~  444 (444)
T TIGR03531       405 FKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL  444 (444)
T ss_pred             eecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence               00        123344456789999999999999863

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.38  E-value=2.6e-10  Score=113.24  Aligned_cols=322  Identities=13%  Similarity=0.099  Sum_probs=176.7

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHH-HHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKA-VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a  175 (451)
                      ..-|||+.+-.++       +.+.++ +.. +..+.-  .+..++...+|++.+++.++.+.+++++||+.|...+..+.
T Consensus        37 ~~v~iDLltDsgT-------~aMs~~q~a~-~~~GDe--~yag~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~  106 (450)
T TIGR02618        37 EDVYIDLLTDSGT-------NAMSDKQWAG-LMMGDE--AYAGSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIA  106 (450)
T ss_pred             CceEEEcccCCCc-------HHHHHHHHHH-hhhcch--hhcCCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhC
Confidence            4579999987663       444444 222 211111  12234457899999999999999999999999987653322


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCc-CCCCCeeEeeC--C-CHHHHHHhcCCC---CeE
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFE-PVMPGVNFVEY--G-NIEATRKLIQPG---KTA  248 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~-d~~~le~~l~~~---~~a  248 (451)
                         .        +++|.|  ..+.|...+...+...|......... ...+. ...|+  + |++.|+++|.+.   .++
T Consensus       107 ---l--------~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~-~~~p~~GniD~~~Le~aI~~~~~~~~~  172 (450)
T TIGR02618       107 ---I--------KPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQ-LNIPFKGNVDLKKLQKLIDEVGADKIP  172 (450)
T ss_pred             ---C--------CCcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccc-cCCCCCCCcCHHHHHHHhccccCcccC
Confidence               1        156755  44444333333233333211000000 00000 00011  1 899999999742   345


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc-----------cccccc--ccccCCCcceeeecc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR-----------TGYLWA--HEHYGIFPDIMTLAK  315 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr-----------~G~~~~--~~~~~~~pdi~t~sK  315 (451)
                      .|.++-..+..|+.+.+.+.+++++++|++||+.||.|-++. +|.           .+....  .....-..|.+ ++|
T Consensus       173 lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~-~~S  250 (450)
T TIGR02618       173 YICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VENAYFIKEREQGYEDKSIAEILKEMMSYADGC-TMS  250 (450)
T ss_pred             ceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhChhhhhcccccccCCCHHHHHHHHhccCcEE-EEe
Confidence            566665555554467888999999999999999999999874 311           111000  00000134554 444


Q ss_pred             cc-cCCcccccccc--cHHHHhhccCC--C--ccCCCCC-cHHHHHHHHHHHHHhcChHHHHH-----------HHh-CC
Q 013008          316 PL-AGGLPIGAALV--TEKVASAINYG--D--HGSTFAG-SPLVCNAAIAVLDKISNPAFLAS-----------KLA-RN  375 (451)
Q Consensus       316 ~l-g~G~~iG~v~~--~~~i~~~~~~~--~--~~~t~~~-~~~~~aaa~aal~~~~~~~~~~~-----------~~~-~~  375 (451)
                      +. .++.|+|.+++  ++++++..+..  .  -..|+++ ..-.+.|...+|+...+..+.++           |.+ .+
T Consensus       251 ~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~Gv  330 (450)
T TIGR02618       251 GKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAAGV  330 (450)
T ss_pred             eccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCC
Confidence            44 23457666554  67888876543  1  1124443 22233343444554333333333           212 23


Q ss_pred             CCcceecccceeEEEEec----------CChHHHHHHHH-HCCceeee-------c----CC-----CCEEEEeCCC-CC
Q 013008          376 PHVKDVRGLGLIIGIEFD----------VSATPVVDACR-DSGLLVLT-------A----GK-----GNVVRLVPPL-II  427 (451)
Q Consensus       376 ~~~~~v~g~G~~~~~~~~----------~~~~~~~~~l~-~~Gv~~~~-------~----~~-----~~~iri~~~~-~~  427 (451)
                      |.+  .+..|..+.++..          -++..++.+|. +.||--.-       .    +.     -..+|+.+|- +-
T Consensus       331 pv~--~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~y  408 (450)
T TIGR02618       331 PIV--EPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVY  408 (450)
T ss_pred             ccc--CCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccc
Confidence            332  2345666666652          24567777776 34543221       0    11     1457887664 56


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q 013008          428 SEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       428 t~e~i~~~l~~l~~~l~~~  446 (451)
                      |.+++|...++|..+.++-
T Consensus       409 t~~h~~~v~~~~~~~~~~~  427 (450)
T TIGR02618       409 TYAHMDVVADGIIKLYKHR  427 (450)
T ss_pred             cHhHHHHHHHHHHHHHhhH
Confidence            9999999999999887653

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.38  E-value=3.8e-10  Score=108.52  Aligned_cols=283  Identities=19%  Similarity=0.197  Sum_probs=183.4

Q ss_pred             HHHHHHHHhhccCCCeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC
Q 013008          142 QIELAKRLVACSFADRVFFS-NTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF  220 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~v~~~-~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  220 (451)
                      ..+|.++|++..|.|.|.+. ++|+++=.+.+.++|+|+..++..   .|+.+|+.+ +-||....+..+.|-.      
T Consensus       111 i~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~---~R~~~LIP~-SAHGTNPASAam~G~~------  180 (496)
T COG1003         111 IYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEG---HRNICLIPD-SAHGTNPASAAMAGFK------  180 (496)
T ss_pred             HHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCC---cCcEEEeec-cccCCChhhHhhcCce------
Confidence            56888999999998877765 679999999999999999877764   366666665 6799887776665432      


Q ss_pred             cCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecc----ccC
Q 013008          221 EPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV----QCG  291 (451)
Q Consensus       221 ~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv----~tg  291 (451)
                            ++.++.+     |+++|++++. ++++++++...+ +-|.   =++-+++|+++.+++|..|+.|-+    +-|
T Consensus       181 ------VV~V~~~~~G~VDlddLk~k~~-~~~AalMiTnPs-T~Gv---FE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG  249 (496)
T COG1003         181 ------VVVVKCDENGNVDLDDLRAKAE-DNLAALMITNPS-TLGV---FEEDIREICEIVHEAGGQVYYDGANLNAIVG  249 (496)
T ss_pred             ------EEEEecCCCCCccHHHHHHHhc-cceeEEEeccCc-cccc---chhhHHHHHHHHHHcCCEEEecCcchhhhhc
Confidence                  2233332     8999999997 467777765433 2243   234588999999999999999987    445


Q ss_pred             CCccccc-ccccccCCCcceeeecccccC-CcccccccccHHHHhhccC----C---------------CccCCCCCcHH
Q 013008          292 LGRTGYL-WAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAINY----G---------------DHGSTFAGSPL  350 (451)
Q Consensus       292 ~gr~G~~-~~~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~~~----~---------------~~~~t~~~~~~  350 (451)
                      ..|.|.+ +-..|+++.-   ||+-.-|| |-..|-|.+++++...+..    .               .....+-||..
T Consensus       250 ~~rPGd~G~DV~HlNLHK---TF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~  326 (496)
T COG1003         250 LARPGDMGFDVVHLNLHK---TFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSAS  326 (496)
T ss_pred             cccccccccceEEeeccc---ccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcch
Confidence            5566653 2233333321   55555565 4667778888887776532    0               01223344544


Q ss_pred             HHHHHHHHHHHhcChHHHHH----------HHh----CCCCcceecccc---eeEEEEec-------CChHHHHHHHHHC
Q 013008          351 VCNAAIAVLDKISNPAFLAS----------KLA----RNPHVKDVRGLG---LIIGIEFD-------VSATPVVDACRDS  406 (451)
Q Consensus       351 ~~aaa~aal~~~~~~~~~~~----------~~~----~~~~~~~v~g~G---~~~~~~~~-------~~~~~~~~~l~~~  406 (451)
                      ....+.+-+..+-.+++.+.          +++    .++..  ..+..   .-+.++..       ....+++++|++.
T Consensus       327 il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~--y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~  404 (496)
T COG1003         327 ILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVP--YTGENRVAHECILDARPLKKETGVRALDVAKRLLDY  404 (496)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCccc--cCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhc
Confidence            44444554554444433322          222    23322  12222   11122221       4578899999999


Q ss_pred             CceeeecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008          407 GLLVLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS  450 (451)
Q Consensus       407 Gv~~~~~~~----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~  450 (451)
                      |+....-..    .+.+.|-|.-.-+++++|+++++|.++.++.+++|
T Consensus       405 GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~  452 (496)
T COG1003         405 GFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAVP  452 (496)
T ss_pred             CCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            987654322    25688999999999999999999999998887664

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.37  E-value=4.6e-10  Score=111.74  Aligned_cols=320  Identities=14%  Similarity=0.113  Sum_probs=174.8

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR  176 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~  176 (451)
                      ..-|||+.+-.++       +.+.+++..++..+.-.  +..++...+|++.+++++|.+.+++++||+.|+..++.+..
T Consensus        44 ~~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd~--Yagd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v  114 (460)
T PRK13237         44 EDVYIDLLTDSGT-------NAMSDRQWAGMMIGDEA--YAGSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAI  114 (460)
T ss_pred             CcEEEECcccCCc-------hhccHHHHHHHhhcchh--hcCCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCC
Confidence            4579999987764       23333333333221111  12344478899999999999999999999999998644222


Q ss_pred             HHhhhcCCCCCCCCceEEEEcCCccCChhhh-hhccCCCCcC----CCCcCCCCCeeEeeCC-CHHHHHHhcCCC---Ce
Q 013008          177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGA-LALTSKEHYR----SPFEPVMPGVNFVEYG-NIEATRKLIQPG---KT  247 (451)
Q Consensus       177 ~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~-d~~~le~~l~~~---~~  247 (451)
                         +        +++.|   .+.+|-.+..+ +...|....-    ..+.+...  .....+ |++.|+++|.+.   ++
T Consensus       115 ---~--------pGd~V---p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~--~p~tgnlD~d~Le~~I~~~~~~~~  178 (460)
T PRK13237        115 ---K--------PGQYV---PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSD--HPFKGNVDLDKLQALIDEVGAENI  178 (460)
T ss_pred             ---C--------CcCEE---CCccchHhhHHHHHhCCcEEEeeecccccccccC--CCCCCCcCHHHHHHHhccccCCcc
Confidence               1        46643   33334333222 3222221100    00000000  001112 899999999732   34


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC-----------ccccccc--ccccCCCcceeeec
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-----------RTGYLWA--HEHYGIFPDIMTLA  314 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g-----------r~G~~~~--~~~~~~~pdi~t~s  314 (451)
                      +.+.++-..+..|+.+.+.+.+++|.++|++||+.||.|-++. +|           +.|....  .....-.-|+++||
T Consensus       179 ~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S  257 (460)
T PRK13237        179 AYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMS  257 (460)
T ss_pred             CceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCCCcHhHHhhhccCcCcEEEEe
Confidence            4445444444444467788899999999999999999999985 33           1111100  00011235777776


Q ss_pred             --ccccCCccc-ccccc-cHHHHhhccCC----CccCCCCCcHH-HHHHHHHHHHHhcChHHHHH-----------HH-h
Q 013008          315 --KPLAGGLPI-GAALV-TEKVASAINYG----DHGSTFAGSPL-VCNAAIAVLDKISNPAFLAS-----------KL-A  373 (451)
Q Consensus       315 --K~lg~G~~i-G~v~~-~~~i~~~~~~~----~~~~t~~~~~~-~~aaa~aal~~~~~~~~~~~-----------~~-~  373 (451)
                        |.++.  ++ |+++. ++++.+.++..    .-..||++-.- -++|....|+...++++++.           |. .
T Consensus       258 ~~K~~~~--~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        258 GKKDCLV--NIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             CCCCCCC--CCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence              55543  33 66665 47788877543    12235554211 22222223443334455544           22 3


Q ss_pred             CCCCcceecccceeEEEEec----------CChHHHHHHHHH-CCceee-------ec----CC-----CCEEEEeCCC-
Q 013008          374 RNPHVKDVRGLGLIIGIEFD----------VSATPVVDACRD-SGLLVL-------TA----GK-----GNVVRLVPPL-  425 (451)
Q Consensus       374 ~~~~~~~v~g~G~~~~~~~~----------~~~~~~~~~l~~-~Gv~~~-------~~----~~-----~~~iri~~~~-  425 (451)
                      .+|.+.  +..|.-+.++..          -.+..++.+|.. .||-..       ..    +.     -..+|+.+|- 
T Consensus       336 Gvpv~~--p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr  413 (460)
T PRK13237        336 GVPIVE--PVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRR  413 (460)
T ss_pred             CCceec--CCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccc
Confidence            355442  233444444431          246677777763 354322       11    11     1457887664 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q 013008          426 IISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +-|.+++|..+++|..+.++-
T Consensus       414 ~yt~~h~~~v~~~~~~~~~~~  434 (460)
T PRK13237        414 VYTYAHMDVVADSVIKLYKHR  434 (460)
T ss_pred             cccHHHHHHHHHHHHHHHHhH
Confidence            569999999999999887653

>PLN02880 tyrosine decarboxylase

Probab=99.35  E-value=1.5e-10  Score=118.66  Aligned_cols=302  Identities=13%  Similarity=0.056  Sum_probs=166.2

Q ss_pred             CHHHHHHHHHHhhccCC-C--------eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh
Q 013008          139 SIPQIELAKRLVACSFA-D--------RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA  209 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~~-e--------~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~  209 (451)
                      +..+.++.+++++.++. +        .-++++||++||..|+.+||.......+... .+.-++..+..-|-+..-+..
T Consensus       121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~-~~~~vv~~S~~aH~Sv~Kaa~  199 (490)
T PLN02880        121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNA-LEKLVVYASDQTHSALQKACQ  199 (490)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccc-cCCeEEEEcCCchHHHHHHHH
Confidence            34477788888888873 2        2688999999999999999965421111100 122345455555777665555


Q ss_pred             ccCCCCcCCCCcCCCC--CeeEeeCCCHHHHHHhcCC----C-CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCE
Q 013008          210 LTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQP----G-KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL  282 (451)
Q Consensus       210 ~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~----~-~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l  282 (451)
                      +.|-....-...|...  +..    -|+++|++.|+.    + .+.+|+..--..+.|.+-|    +++|.++|++||++
T Consensus       200 ~lGlg~~~v~~Vp~d~~~~~~----md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iw  271 (490)
T PLN02880        200 IAGIHPENCRLLKTDSSTNYA----LAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGKIAKSNGMW  271 (490)
T ss_pred             HcCCCHHHEEEeecCCCcCCc----CCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHHHHHHcCCE
Confidence            4432210000011111  111    178999998862    1 2445555444445577667    99999999999999


Q ss_pred             EEEeccccCCCcccccccccccCC-Ccceeeec--ccccCCcccccccccH--HHHhhccCCC----c-----cCCC---
Q 013008          283 LVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTE--KVASAINYGD----H-----GSTF---  345 (451)
Q Consensus       283 lI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~--~i~~~~~~~~----~-----~~t~---  345 (451)
                      +++|-+|.|+-..-..+-....|+ ..|.+++.  |.+...++.|+++.++  .+...+....    .     ..++   
T Consensus       272 lHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~  351 (490)
T PLN02880        272 FHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYK  351 (490)
T ss_pred             EEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChh
Confidence            999999876422211111112354 57877664  8887778888888763  2222221110    0     0000   


Q ss_pred             -----CCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceec-ccceeEEEEecC---C-------h
Q 013008          346 -----AGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVR-GLGLIIGIEFDV---S-------A  396 (451)
Q Consensus       346 -----~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~-g~G~~~~~~~~~---~-------~  396 (451)
                           .+..+.......+|+.+-.+++.+.             .+++.+.+.-+. ....++.|.+..   .       .
T Consensus       352 ~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n  431 (490)
T PLN02880        352 DWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLN  431 (490)
T ss_pred             ccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHH
Confidence                 1111122233334554433333322             333444333222 233344554421   1       1


Q ss_pred             HHHHHHHHHCCcee-eec--CCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008          397 TPVVDACRDSGLLV-LTA--GKGNVVRLVPP-LIISEQELDQAVEILCKTLPVLDSN  449 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~-~~~--~~~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~~~~  449 (451)
                      .++.++|.+.|-.. .+.  ....++|+++. ...+++|++.+++.|.+..+++...
T Consensus       432 ~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~  488 (490)
T PLN02880        432 HDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK  488 (490)
T ss_pred             HHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            34666677666544 332  11257898764 4556799999999999988876543

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.34  E-value=5.6e-11  Score=117.82  Aligned_cols=294  Identities=14%  Similarity=0.079  Sum_probs=165.3

Q ss_pred             CCHHHHHHHHHHHhhc---ccccCCCCCHHHHHHHHHHhhccCC---CeEEec-CCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008          115 GDADWIKAVVDQANVL---THVSNMYYSIPQIELAKRLVACSFA---DRVFFS-NTGTEANEAAIKFARKFQRHSNPDSK  187 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~-~sG~eA~~~al~~a~~~~~~~~~~~~  187 (451)
                      -+|+|.+|+.++....   .|.+ .-......+..+.++++++.   ..|+|+ +|||.|++.++..+.           
T Consensus        14 ~~~~v~~a~~~~~~~~~~~~hr~-~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~-----------   81 (361)
T TIGR01366        14 VRLEQLQALTTTAASLFGTSHRQ-APVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI-----------   81 (361)
T ss_pred             CCHHHHHHHHhcCccccccCcCC-hHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc-----------
Confidence            4788888877542111   1111 11223366777888888873   268775 669999999998553           


Q ss_pred             CCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHH
Q 013008          188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                       .+ +.++...+.+|....-.+...         |....+..++....+.++..+ ..++++|.+....+..|.+.|   
T Consensus        82 -~~-~~l~i~~G~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~lV~~~h~et~tG~~~p---  146 (361)
T TIGR01366        82 -EK-KSLHLSFGEFSSKFAKAVKLA---------PWLGEPIIVTADPGSAPEPQA-DPGVDVIAWAHNETSTGVAVP---  146 (361)
T ss_pred             -cc-cccEEecCHHHHHHHHHHHhh---------hccCCceEEecCCCCCCCCcc-CCCCCEEEEcccCCccceecc---
Confidence             12 233333344443322222110         000011222211112222223 346788888887777888776   


Q ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCC-----
Q 013008          268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD-----  340 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~-----  340 (451)
                       +++|   ++++|+++|+|-+++ +|  +.....+    ..|++++|  |.+++--.++.++.++++++.+.+..     
T Consensus       147 -i~~I---~~~~g~~~iVDavqs-~g--~~~idv~----~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~  215 (361)
T TIGR01366       147 -VRRP---EGSDDALVVIDATSG-AG--GLPVDIA----ETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRW  215 (361)
T ss_pred             -cccc---cccCCCeEEEEcCcc-cc--CCCCCHH----HCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCC
Confidence             5555   689999999999996 43  2222222    26888776  98874112444556887776654210     


Q ss_pred             ---------------ccCCCCCcHH-HHHHHHHHHHHhcCh-HHH---HH----------HHhCCCCcce-eccc----c
Q 013008          341 ---------------HGSTFAGSPL-VCNAAIAVLDKISNP-AFL---AS----------KLARNPHVKD-VRGL----G  385 (451)
Q Consensus       341 ---------------~~~t~~~~~~-~~aaa~aal~~~~~~-~~~---~~----------~~~~~~~~~~-v~g~----G  385 (451)
                                     ...|.+.+++ ...+..++++.+.+. ++.   ++          .++..+.+.. +...    .
T Consensus       216 ~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~  295 (361)
T TIGR01366       216 VPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQ  295 (361)
T ss_pred             CchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhccc
Confidence                           0233333333 334566777776543 221   21          1223332111 1111    1


Q ss_pred             eeEEEEe--cCChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          386 LIIGIEF--DVSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       386 ~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ....+.+  +.+..++.+.|.++||.+.++..   +..+|++.....|++|+++++++|+++++++
T Consensus       296 ~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  361 (361)
T TIGR01366       296 VVGTIDFVDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL  361 (361)
T ss_pred             ceEEEECCCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence            1122333  24567888999999998876521   3579999999999999999999999988753

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.33  E-value=6.6e-12  Score=119.76  Aligned_cols=198  Identities=17%  Similarity=0.164  Sum_probs=122.3

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV  194 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii  194 (451)
                      .+|++.+++.++. . +.. .+...+...+|++++++.++.+.++|++||+.||..++++...           +++.||
T Consensus         7 ~~~~m~~a~~~a~-~-gd~-~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~-----------~~~~vi   72 (290)
T PF01212_consen    7 PTPAMLEAMAAAN-V-GDD-AYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLR-----------PGESVI   72 (290)
T ss_dssp             S-HHEEHHHHHTT-S-B-C-CTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHH-----------TTEEEE
T ss_pred             CCHHHHHHHHccc-c-CCc-ccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHh-----------cCCcee
Confidence            6799999994433 2 121 2345666899999999999999999999999999999997763           467777


Q ss_pred             EEcCC-ccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHH
Q 013008          195 SFTNS-FHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       195 ~~~~~-yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      ..+++ .|.+..++. .++|.....   .+...+-.    -|+++|++.++.     .++++|.+|......|+.+++.+
T Consensus        73 ~~~~aHi~~~E~ga~~~~~G~~~~~---l~~~~~G~----l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~  145 (290)
T PF01212_consen   73 CADTAHIHFDETGAIEELSGAKLIP---LPSDDDGK----LTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLE  145 (290)
T ss_dssp             EETTEHHHHSSTTHHHHHTTCEEEE---EBECTGTB----B-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HH
T ss_pred             ccccceeeeeccchhhHhcCcEEEE---CCCcccCC----CCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHH
Confidence            77653 222222332 223221100   00001001    178999999873     46899999988777666789999


Q ss_pred             HHHHHHHHHHHhCCEEEEeccccC--CCcccccccccccCCCcceeeecccccCCcccccc-cccHHHHhh
Q 013008          268 FLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAA-LVTEKVASA  335 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v-~~~~~i~~~  335 (451)
                      +|++|.++|++||+.|+.|-+--.  ....|.  ....+--..|++++|=+-++|.+.|.+ ++++++++.
T Consensus       146 el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~--~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~  214 (290)
T PF01212_consen  146 ELRAISELAREHGLPLHMDGARLANAAAALGV--SLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIAK  214 (290)
T ss_dssp             HHHHHHHHHHHHT-EEEEEETTHHHHHCHHHH--HHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHHH
T ss_pred             HHHHHHHHHHhCceEEEEehhhHHHhhhcccc--cHHHHhhhCCEEEEEEEcccccccceEEEechHHHHH
Confidence            999999999999999999966310  001111  111222357888766444445566665 568885544

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.33  E-value=4.3e-10  Score=110.83  Aligned_cols=295  Identities=9%  Similarity=-0.000  Sum_probs=171.8

Q ss_pred             CCHHHHHHHHHHHhhcccccC----CCC--C---HHHHHHHHHHhhccCC---CeEEecCC-HHHHHHHHHHHHHHHhhh
Q 013008          115 GDADWIKAVVDQANVLTHVSN----MYY--S---IPQIELAKRLVACSFA---DRVFFSNT-GTEANEAAIKFARKFQRH  181 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~----~~~--~---~~~~~l~~~l~~~~~~---e~v~~~~s-G~eA~~~al~~a~~~~~~  181 (451)
                      .|..|++++.+.+..+.....    ..+  .   ....++.+.|.++++.   ..|+|++| ||+|+++++.....    
T Consensus         3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~----   78 (349)
T TIGR01364         3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA----   78 (349)
T ss_pred             CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC----
Confidence            355788888888764321111    111  1   2356677778787762   35777655 99999999986542    


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCC
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG  260 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G  260 (451)
                             +++++++...++.|....-+.-. +.....    ...+   ..++.+..++++.....++.+|.+.-+-..+|
T Consensus        79 -------~~~~~l~i~~G~fg~r~~~~a~~~g~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~v~~th~ETstG  144 (349)
T TIGR01364        79 -------EGKVADYIVTGAWSKKAAKEAKKYGVVNVV----ASGK---EGNYTKIPDPSTWEISEDAAYVHYCANETIHG  144 (349)
T ss_pred             -------CCCeEEEEECCHHHHHHHHHHHHhCCcEEE----eccc---cCCCCCCCCHHhcCCCCCCCEEEEcCCCCccc
Confidence                   47788888777766654322211 111000    0000   01233333333222233566666666655666


Q ss_pred             ccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccC
Q 013008          261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINY  338 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~  338 (451)
                      ...+         ++++.+++++|+|-+++ +|  +...-.+.+    |++++|  |++|. -.+|++.+++++.+.+.+
T Consensus       145 v~~~---------~l~~~~~~l~iVDavss-~g--~~~id~~~~----d~~~~ssqK~lgP-~Glg~l~~s~~~~~~~~~  207 (349)
T TIGR01364       145 VEFR---------ELPDVKNAPLVADMSSN-IL--SRPIDVSKF----GLIYAGAQKNIGP-AGLTVVIVRKDLLGRASR  207 (349)
T ss_pred             Eecc---------eecccCCCeEEEEcccc-cc--CccCCHHHc----cEEEEecccccCC-CceEEEEECHHHHhhccc
Confidence            6433         67778899999999986 43  222222322    366665  98862 347888899988876643


Q ss_pred             CC-----------ccCCC-CCcHHHHHHHHHHHHHhcCh-HHHHH-------------HHhCCCCc-ce-ec--ccc-ee
Q 013008          339 GD-----------HGSTF-AGSPLVCNAAIAVLDKISNP-AFLAS-------------KLARNPHV-KD-VR--GLG-LI  387 (451)
Q Consensus       339 ~~-----------~~~t~-~~~~~~~aaa~aal~~~~~~-~~~~~-------------~~~~~~~~-~~-v~--g~G-~~  387 (451)
                      ..           ...++ +.|.....+..++|+.+.++ ++...             .++.++.+ .. ..  ... ..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v  287 (349)
T TIGR01364       208 ITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMN  287 (349)
T ss_pred             CCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeE
Confidence            20           11223 34556667777888887654 33221             23444422 11 11  112 34


Q ss_pred             EEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       388 ~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ..|.++.  ...++.+.+.++|+.+.++.. .+.+|+++....|+||||.+++.|+++++
T Consensus       288 ~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~  347 (349)
T TIGR01364       288 VVFTLGNEELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQK  347 (349)
T ss_pred             EEEecCChhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence            5555431  125666788889995555532 36899999999999999999999998765

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.33  E-value=1.1e-11  Score=119.58  Aligned_cols=203  Identities=18%  Similarity=0.151  Sum_probs=119.0

Q ss_pred             CCHHHHHHHHHHhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CC
Q 013008          138 YSIPQIELAKRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EH  215 (451)
Q Consensus       138 ~~~~~~~l~~~l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~  215 (451)
                      +.....++.+.+++.++.+++++ ++|+++|+..++..+.           .++|+|++..++|... ..++.+.+. +.
T Consensus        57 ~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~-----------~~gd~Vlv~~~~h~s~-~~~~~~~g~~~~  124 (294)
T cd00615          57 PTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC-----------GPGDKILIDRNCHKSV-INGLVLSGAVPV  124 (294)
T ss_pred             CChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcC-----------CCCCEEEEeCCchHHH-HHHHHHCCCEEE
Confidence            34457788888999888766665 8989999999988654           1688999998876443 334444332 11


Q ss_pred             cCCCCcCCCCCeeEeeCCCHHHHHHhcCC-CCeEEEEE-ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC-C
Q 013008          216 YRSPFEPVMPGVNFVEYGNIEATRKLIQP-GKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-L  292 (451)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~aavi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-~  292 (451)
                      +...  ....+.......|+++++++++. .++++|++ .| + ..|...+    +++|.++|++||+++|+||+|.. +
T Consensus       125 ~v~~--~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~-~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~  196 (294)
T cd00615         125 YLKP--ERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-T-YYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHF  196 (294)
T ss_pred             EecC--ccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-C-CCCEecC----HHHHHHHHHhcCCeEEEECcchhhh
Confidence            1100  00011000011379999999863 34555444 44 2 3576665    99999999999999999999964 2


Q ss_pred             CcccccccccccCCCccee--eecccccCCcccccc-cccHHHH--hhccCC-CccCCCCCcHHHHHHHHHHHHHh
Q 013008          293 GRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAA-LVTEKVA--SAINYG-DHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v-~~~~~i~--~~~~~~-~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      ...+. ..........|++  +++|+++ |++.|++ ..+++..  +.+... ....|.+.+.+.+++..++++.+
T Consensus       197 ~~~~~-~~~~~~~~~~div~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~  270 (294)
T cd00615         197 RFHPI-LPSSAAMAGADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMM  270 (294)
T ss_pred             ccCcc-cCcchhhcCCcEEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHH
Confidence            22221 1111112245665  5679874 4555444 3443321  112111 12234455666677777777765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.31  E-value=1.6e-09  Score=99.81  Aligned_cols=263  Identities=21%  Similarity=0.225  Sum_probs=159.5

Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee--C
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE--Y  232 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  232 (451)
                      ..-.++..||+.+.+.|+--..           .|+|+|+++.-+-.|....-+.-           .+..++..++  +
T Consensus        68 ~~tf~isgsGh~g~E~al~N~l-----------ePgd~vLv~~~G~wg~ra~D~~~-----------r~ga~V~~v~~~~  125 (385)
T KOG2862|consen   68 AQTFVISGSGHSGWEAALVNLL-----------EPGDNVLVVSTGTWGQRAADCAR-----------RYGAEVDVVEADI  125 (385)
T ss_pred             CceEEEecCCcchHHHHHHhhc-----------CCCCeEEEEEechHHHHHHHHHH-----------hhCceeeEEecCc
Confidence            3456777889999999987655           27999999877665543222111           1112222222  1


Q ss_pred             C---CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc
Q 013008          233 G---NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD  309 (451)
Q Consensus       233 ~---d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd  309 (451)
                      .   .++.+++.+..+++.+|++.-.-+.+|+..+   .++..-++|++|+++|++|-|-+ +|  |..|.++.+|+..-
T Consensus       126 G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-lg--gt~F~mDewgVDva  199 (385)
T KOG2862|consen  126 GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-LG--GTEFEMDEWGVDVA  199 (385)
T ss_pred             ccCccHHHHHHHHHhcCCceEEEEecCccccccch---HHHHHHHHhhcCCeEEEEechhh-cC--CccceehhhcccEE
Confidence            1   5899999998888899998888778887544   36677899999999999999986 53  56678888886554


Q ss_pred             eeeecccccCCcccccccccHHHHhhccCCCc-----------------------cCCCCCcHHHHHHHHHHHHHhcChH
Q 013008          310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDH-----------------------GSTFAGSPLVCNAAIAVLDKISNPA  366 (451)
Q Consensus       310 i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~-----------------------~~t~~~~~~~~aaa~aal~~~~~~~  366 (451)
                      ...--|++++--.++-+..++..+++++....                       .+-+..+.-......++|..+-+++
T Consensus       200 ytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeG  279 (385)
T KOG2862|consen  200 YTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEG  279 (385)
T ss_pred             EecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHH
Confidence            44556999852223336667776666643210                       0111122334455667777665554


Q ss_pred             HHHH-------------HHhCCCCcce-ecc---cceeEEEEe--cCChHHHHHHHHHCCceeeecCC----CCEEEEeC
Q 013008          367 FLAS-------------KLARNPHVKD-VRG---LGLIIGIEF--DVSATPVVDACRDSGLLVLTAGK----GNVVRLVP  423 (451)
Q Consensus       367 ~~~~-------------~~~~~~~~~~-v~g---~G~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~----~~~iri~~  423 (451)
                      +.+.             -++.+..--. +..   .-....+..  ..+..+++..+..++.....++-    +.++||-.
T Consensus       280 L~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl  359 (385)
T KOG2862|consen  280 LENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGL  359 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEE
Confidence            4332             1111110000 000   001111111  25678899999988554443332    46788853


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHH
Q 013008          424 -PLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       424 -~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                       .-..+.|.|+..++.|+.++.+
T Consensus       360 ~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  360 LGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             eeccCCcHHHHHHHHHHHHHHhh
Confidence             3345778899999999988865

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.29  E-value=1.4e-09  Score=118.51  Aligned_cols=320  Identities=13%  Similarity=0.071  Sum_probs=177.3

Q ss_pred             CEEEeeccCcccccCCCCCH-HHHHHHHHHHhhcccccCC-C-----CCHHHHHHHHHHhhccC--C-C-eEEecCCHHH
Q 013008           98 REYLDLSSGIAVNALGHGDA-DWIKAVVDQANVLTHVSNM-Y-----YSIPQIELAKRLVACSF--A-D-RVFFSNTGTE  166 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p-~v~~a~~~~~~~~~~~~~~-~-----~~~~~~~l~~~l~~~~~--~-e-~v~~~~sG~e  166 (451)
                      .-|+|..+...      .+| .|.+++.+........... +     ......+..++++++++  . + .|+||+++|+
T Consensus        35 ~iYLD~Aatt~------~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~  108 (805)
T PLN02724         35 VVYLDHAGATL------YSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA  108 (805)
T ss_pred             CEeEeCCCCCC------CCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence            68999776432      344 4445454544432111111 1     12236677788888887  3 3 5899999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-------CeeEeeCCCHHHHH
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-------GVNFVEYGNIEATR  239 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~le  239 (451)
                      |+..+..... +         .+++.||+ ....|........+.........+.+...       ....+. .+.++|+
T Consensus       109 alnlva~~l~-~---------~~gd~Iv~-t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~-~~~~~l~  176 (805)
T PLN02724        109 ALKLVGETFP-W---------SSESHFCY-TLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVV-VKSRGLQ  176 (805)
T ss_pred             HHHHHHHHCC-C---------CCCCeEEE-eeccccchHHHHHHHHHcCCeEEeccchhccccccccccccc-cchhhhh
Confidence            9998866431 1         14677776 45666655433222110000000111110       000000 0124455


Q ss_pred             HhcC---------CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHh--------CCEEEEeccccCCCccccccccc
Q 013008          240 KLIQ---------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA--------GALLVFDEVQCGLGRTGYLWAHE  302 (451)
Q Consensus       240 ~~l~---------~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--------g~llI~DEv~tg~gr~G~~~~~~  302 (451)
                      +.+.         ..++.+|.+..+.+..|.+.|    ++.+.++++..        ++++++|-+|+ +|..    ..+
T Consensus       177 ~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~----piD  247 (805)
T PLN02724        177 RRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS----PPD  247 (805)
T ss_pred             hhhhhhhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC----CCC
Confidence            5431         134568888888888898887    66554444432        36899999985 4322    222


Q ss_pred             ccCCCcceeeec--ccccCCcccccccccHHHHhhccCCCccC-C---------C--------------CCcHHHHHHHH
Q 013008          303 HYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGDHGS-T---------F--------------AGSPLVCNAAI  356 (451)
Q Consensus       303 ~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~~~~-t---------~--------------~~~~~~~aaa~  356 (451)
                      ...+.+|++++|  |.+|+-..+|++++++++.+.+.+...++ +         +              +.|.++.++..
T Consensus       248 v~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~  327 (805)
T PLN02724        248 LSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALR  327 (805)
T ss_pred             hhhcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHH
Confidence            234568999887  87764356899999988877665432211 1         1              23556666677


Q ss_pred             HHHHHhcC---hHHHHH----------HHhCCC------Cccee---------cccceeEEEEec-CC-----hHHHHHH
Q 013008          357 AVLDKISN---PAFLAS----------KLARNP------HVKDV---------RGLGLIIGIEFD-VS-----ATPVVDA  402 (451)
Q Consensus       357 aal~~~~~---~~~~~~----------~~~~~~------~~~~v---------~g~G~~~~~~~~-~~-----~~~~~~~  402 (451)
                      ++++.+.+   +...++          .+++++      .+.-+         ...+.++.|.+. .+     ...+...
T Consensus       328 aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l  407 (805)
T PLN02724        328 HGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKL  407 (805)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHH
Confidence            77777644   222222          122332      22211         124556666662 22     2333333


Q ss_pred             HHHCCceeeecC--------------------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          403 CRDSGLLVLTAG--------------------------------------KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       403 l~~~Gv~~~~~~--------------------------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +-++||.++.+.                                      ..+.+|+++.+..|.||||++++.|++.+-
T Consensus       408 ~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~  487 (805)
T PLN02724        408 ASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV  487 (805)
T ss_pred             HHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence            345687775431                                      015799999999999999999999999763

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.29  E-value=5.2e-10  Score=101.09  Aligned_cols=276  Identities=18%  Similarity=0.188  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          140 IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ++..++-+.|+++++.|.+.+|++.-+|-.+++..+.            .++..++.+..-|-.+..+....+......+
T Consensus        61 PpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~------------~~gd~vV~D~~aHYttyvAAEragl~v~eVp  128 (382)
T COG1103          61 PPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALC------------KEGDWVVVDSLAHYTTYVAAERAGLNVAEVP  128 (382)
T ss_pred             CcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhc------------cCCCEEEEcCcchHHHHHHHHhcCCeEEecC
Confidence            3466777789999999999999999999998888666            3556778888888777666554443322211


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhc----CC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLI----QP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l----~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                      . ...|....    +++...+.|    +.  +.++..++.-+-++-|.+..    -+.++++|+++|++++..-+|+ .|
T Consensus       129 ~-tg~Pey~i----~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~G  198 (382)
T COG1103         129 N-TGYPEYKI----TPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VG  198 (382)
T ss_pred             C-CCCCceEe----cHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-ec
Confidence            0 11122222    344444444    32  34777777777788787766    8899999999999999999997 55


Q ss_pred             cccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCC-----------ccCCCCCcHHHHHHHH--HH
Q 013008          294 RTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD-----------HGSTFAGSPLVCNAAI--AV  358 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~-----------~~~t~~~~~~~~aaa~--aa  358 (451)
                      |.-    .....+.+|+++=|  |++++.-|+|.+..++++.+.+-..+           .+-|-.|.|+....|-  .+
T Consensus       199 rmp----vs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V  274 (382)
T COG1103         199 RMP----VSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHV  274 (382)
T ss_pred             ccc----ccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHH
Confidence            542    33345679988776  88887669999999998887652211           1223334444322221  22


Q ss_pred             HHHhcChHHHHH---------HHhCCCCcce--ecccc-eeEEEEec----------CChHHHHHHHHHCCcee-eecCC
Q 013008          359 LDKISNPAFLAS---------KLARNPHVKD--VRGLG-LIIGIEFD----------VSATPVVDACRDSGLLV-LTAGK  415 (451)
Q Consensus       359 l~~~~~~~~~~~---------~~~~~~~~~~--v~g~G-~~~~~~~~----------~~~~~~~~~l~~~Gv~~-~~~~~  415 (451)
                      .+.+.  .|.+.         -++++..+..  .++.- -++.|+..          ...--+.++|.++||.- .|+..
T Consensus       275 ~eRVk--rWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~T  352 (382)
T COG1103         275 VERVK--RWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPGQT  352 (382)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCccccccCce
Confidence            22221  22221         2233321111  11111 11222211          11223667888898864 44433


Q ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          416 GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       416 ~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                       ..+.++ -+..+.|+++..++++++++++
T Consensus       353 -k~~K~s-vyGl~~Eqve~V~~afkeI~ek  380 (382)
T COG1103         353 -KYFKLS-VYGLSWEQVEYVVDAFKEIAEK  380 (382)
T ss_pred             -eEEEEE-eecCCHHHHHHHHHHHHHHHHh
Confidence             556665 5688999999999999998875

>PLN02590 probable tyrosine decarboxylase

Probab=99.28  E-value=3.2e-09  Score=109.26  Aligned_cols=294  Identities=15%  Similarity=0.100  Sum_probs=165.9

Q ss_pred             CHHHHHHHHHHhhccC-CC--------eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh
Q 013008          139 SIPQIELAKRLVACSF-AD--------RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA  209 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~-~e--------~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~  209 (451)
                      +..+.++.++|++.++ ++        .-+|++||++||..|+.+||.......+... ..+-++..+..-|-+..-+..
T Consensus       169 t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~-~~~~vvy~S~~aH~Sv~KAa~  247 (539)
T PLN02590        169 TELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTL-LPQLVVYGSDQTHSSFRKACL  247 (539)
T ss_pred             HHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccC-CCCEEEEecCCchHHHHHHHH
Confidence            3446777788888887 32        3678999999999999999975432111100 112344445445665554544


Q ss_pred             ccCCCCcCCCCcCCCCCeeEeeC-------CCHHHHHHhcCC----C-CeEEEEEccccCCCCccccCHHHHHHHHHHHH
Q 013008          210 LTSKEHYRSPFEPVMPGVNFVEY-------GNIEATRKLIQP----G-KTAAVFVEPIQGEGGIYSATKEFLQFLRDACD  277 (451)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~----~-~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~  277 (451)
                      +.|-..         ..++.+|.       -|+++|+++|+.    . .+.+|+..--..+.|.+=|    |++|.++|+
T Consensus       248 ilGlg~---------~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i~~  314 (539)
T PLN02590        248 IGGIHE---------ENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNIAK  314 (539)
T ss_pred             HcCCCc---------ccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHHHH
Confidence            433211         11222222       178999999852    1 2344444433344566555    999999999


Q ss_pred             HhCCEEEEeccccCCCcccccccccccCC-Ccceeeec--ccccCCcccccccccH--HHHhhccCC----Cc-------
Q 013008          278 DAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTE--KVASAINYG----DH-------  341 (451)
Q Consensus       278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~--~i~~~~~~~----~~-------  341 (451)
                      +||+||++|-+|.|+...-+.+..-..|+ ..|-+++.  |.+...++.|.++.++  .+.+.+...    ..       
T Consensus       315 ~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~  394 (539)
T PLN02590        315 KYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDT  394 (539)
T ss_pred             HhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCccccccc
Confidence            99999999999987632221111112244 36766654  8887778889888764  233322110    00       


Q ss_pred             ---cC--CCC-CcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceecc-cceeEEEEecC---C---
Q 013008          342 ---GS--TFA-GSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVRG-LGLIIGIEFDV---S---  395 (451)
Q Consensus       342 ---~~--t~~-~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~g-~G~~~~~~~~~---~---  395 (451)
                         ..  +.. +-.+.......+|+.+-.+.+.+.             +++..|.+.-+.. .-.++.|.+..   .   
T Consensus       395 ~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~  474 (539)
T PLN02590        395 VVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQ  474 (539)
T ss_pred             CCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHH
Confidence               00  111 123444455556665544444333             3334443332222 22223333311   1   


Q ss_pred             ----hHHHHHHHHHCCceee-ec---CCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          396 ----ATPVVDACRDSGLLVL-TA---GKGNVVRLVP-PLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       396 ----~~~~~~~l~~~Gv~~~-~~---~~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                          ..++.+++.+.|..+. +.   +. .++|+++ +..++++||+.+++.|.+...++-
T Consensus       475 ~~~ln~~l~~~l~~~G~~~vs~t~~~g~-~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~  534 (539)
T PLN02590        475 CNERNRELLAAVNSTGKIFISHTALSGK-FVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT  534 (539)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeEECCE-EEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence                2356677777786543 32   22 4688865 667789999999999999877764

>PLN02263 serine decarboxylase

Probab=99.27  E-value=4.4e-09  Score=105.72  Aligned_cols=272  Identities=14%  Similarity=0.101  Sum_probs=162.3

Q ss_pred             HHHHHHHHhhccCC--C--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcC
Q 013008          142 QIELAKRLVACSFA--D--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR  217 (451)
Q Consensus       142 ~~~l~~~l~~~~~~--e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  217 (451)
                      +.++.++++++++.  +  +-++|+||||||..|+.++|.+.          .+.+++.+..-|-+..-+..+-+-....
T Consensus       135 E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~----------~~~vvy~S~~aH~Sv~KAa~llgi~~~~  204 (470)
T PLN02263        135 EVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF----------PDGILYASRESHYSVFKAARMYRMECVK  204 (470)
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc----------CCcEEEEcCCccHHHHHHHHhcCCcceE
Confidence            66777788888763  2  47899999999999999999753          2346777777776665555544332111


Q ss_pred             CCCcCCCCCeeEeeCCCHHHHHHhcCCCC--eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCC-----EEEEecccc
Q 013008          218 SPFEPVMPGVNFVEYGNIEATRKLIQPGK--TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGA-----LLVFDEVQC  290 (451)
Q Consensus       218 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-----llI~DEv~t  290 (451)
                         .|......    -|+++|++.|..+.  +.+|+..--.-+.|.+=|    +++|.++|++||+     +|++|-++.
T Consensus       205 ---Vp~d~~g~----mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~G  273 (470)
T PLN02263        205 ---VDTLVSGE----IDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALF  273 (470)
T ss_pred             ---eccCCCCc----CcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccch
Confidence               12111111    18999999886432  444444433334466555    9999999999997     999999998


Q ss_pred             CCCc----ccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCC-----CccCCCCCc--HHHHHHHHH
Q 013008          291 GLGR----TGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG-----DHGSTFAGS--PLVCNAAIA  357 (451)
Q Consensus       291 g~gr----~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~--~~~~aaa~a  357 (451)
                      |+-.    .-..+.   +....|-++++  |.++..++.|.++.+++..+.+...     ..-.|..++  ....+...+
T Consensus       274 G~~lPf~~~~~~~d---f~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~  350 (470)
T PLN02263        274 GLMMPFVKRAPKVT---FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWY  350 (470)
T ss_pred             hhHhhhcccccccC---CCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHH
Confidence            7521    100111   11125656655  8877678999999887655444221     011123222  223455566


Q ss_pred             HHHHhcChHHHHH-------------HHhCCCCcceecccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCC
Q 013008          358 VLDKISNPAFLAS-------------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPP  424 (451)
Q Consensus       358 al~~~~~~~~~~~-------------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~  424 (451)
                      +|+.+-.+++.+.             .++..+......+....+.|..  ..    .....+|..+.+.+  +.+++.+.
T Consensus       351 ~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~--p~----~~~~~~gW~L~~~~--~~~Hivvm  422 (470)
T PLN02263        351 TLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFER--PK----DEEFVRRWQLACQG--NIAHVVVM  422 (470)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEec--Cc----hHHhhcceEEccCC--CcEEEEEc
Confidence            6776555555444             1122222222233334433332  21    12245787776543  45777766


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q 013008          425 LIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       425 ~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..++++.+|++++.|.+..+.
T Consensus       423 phv~~~~id~fi~DL~~~~~~  443 (470)
T PLN02263        423 PSVTIEKLDYFLKELVEKRST  443 (470)
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            667899999999999987764

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.25  E-value=6.4e-10  Score=110.12  Aligned_cols=294  Identities=9%  Similarity=-0.018  Sum_probs=173.5

Q ss_pred             CCHHHHHHHHHHHhhccc---c-cCC--CCC---HHHHHHHHHHhhccCC-C--eE-EecCCHHHHHHHHHHHHHHHhhh
Q 013008          115 GDADWIKAVVDQANVLTH---V-SNM--YYS---IPQIELAKRLVACSFA-D--RV-FFSNTGTEANEAAIKFARKFQRH  181 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~---~-~~~--~~~---~~~~~l~~~l~~~~~~-e--~v-~~~~sG~eA~~~al~~a~~~~~~  181 (451)
                      .+++|++|+.+.+.++..   + ...  ...   +...+..+.|+++++. +  ++ ++..||+.|+++++..+..    
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~----   89 (360)
T PRK05355         14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG----   89 (360)
T ss_pred             CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC----
Confidence            578999999988744210   0 000  111   3366777888888872 2  35 4558899999999886552    


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHH-hcCCCCeEEEEEccccCCC
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPGKTAAVFVEPIQGEG  259 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~aavi~ep~~~~~  259 (451)
                             +++++++...+..|....-+.-. +.....    ...++.   ...+..++++ .+++ ++.+|.+.-+-.++
T Consensus        90 -------~g~~~l~i~~G~fg~r~~~~a~~~g~~~~~----~~~~~~---g~~~~~~~~~~~l~~-~~~~V~~th~eTst  154 (360)
T PRK05355         90 -------GGKKADYVDTGSWSKKAIKEAKKYGEVNVA----ASSEDD---GFTYIPPLDEWQLSD-DAAYVHYTSNETID  154 (360)
T ss_pred             -------CCCeEEEEECCHHHHHHHHHHHHhCCceEE----eccccc---CCCCCCChhhccCCC-CCCEEEEccCCCcc
Confidence                   46777777777666654322211 211100    000000   0012233334 5554 56777776666667


Q ss_pred             CccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhcc
Q 013008          260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAIN  337 (451)
Q Consensus       260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~  337 (451)
                      |.+.++   +++|      ||+++|+|-+++ +|  +...-.+.+    |++++|  |.+| -..+|++.+++++.+.+.
T Consensus       155 Gv~~~~---i~~i------~g~l~vVDavss-~g--~~~idv~~~----d~~~~ssqK~lg-P~Glg~l~~s~~~l~~~~  217 (360)
T PRK05355        155 GTEFHE---LPDT------GDVPLVADMSSD-IL--SRPIDVSKF----GLIYAGAQKNIG-PAGLTIVIVREDLLGRAL  217 (360)
T ss_pred             eEecCc---cccc------CCCcEEEEcCcc-cc--CccCCHHHc----cEEEEecccccc-CCceEEEEECHHHHhhcc
Confidence            766432   5544      899999999986 43  222222322    466665  9885 234788889999887765


Q ss_pred             CC-C----------ccCC-CCCcHHHHHHHHHHHHHhcCh-HHH---HH----------HHhCCCCccee-c---cccee
Q 013008          338 YG-D----------HGST-FAGSPLVCNAAIAVLDKISNP-AFL---AS----------KLARNPHVKDV-R---GLGLI  387 (451)
Q Consensus       338 ~~-~----------~~~t-~~~~~~~~aaa~aal~~~~~~-~~~---~~----------~~~~~~~~~~v-~---g~G~~  387 (451)
                      +. .          ...+ ++.|.....+..++|+.+.++ ++.   ++          .++.++....+ .   .....
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v  297 (360)
T PRK05355        218 PSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMN  297 (360)
T ss_pred             cCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcE
Confidence            51 1          1112 334556667777888887655 332   22          23344422111 1   11244


Q ss_pred             EEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       388 ~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ..|.++.  ...++.+.+.++|+.+.++.. .+.+|+++....|.|||+++++.|+++++
T Consensus       298 ~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~  357 (360)
T PRK05355        298 VPFTLADEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFER  357 (360)
T ss_pred             EEEEcCChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            5555432  224566788889999854432 36799999999999999999999999775

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.21  E-value=2.5e-09  Score=102.06  Aligned_cols=289  Identities=13%  Similarity=0.090  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHhhccC--CCeEEecCCHH-HHHHHHHHHHHHHhhhcCCCC--CCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          140 IPQIELAKRLVACSF--ADRVFFSNTGT-EANEAAIKFARKFQRHSNPDS--KEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~--~e~v~~~~sG~-eA~~~al~~a~~~~~~~~~~~--~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      ....++.+..++.++  .++|+...+.+ +-+.-++.-+..+....+.++  ..++-++|.+.|+|-.+.......+   
T Consensus        69 ~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~G---  145 (425)
T PF12897_consen   69 DGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFG---  145 (425)
T ss_dssp             S--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT---
T ss_pred             CChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhC---
Confidence            334566666667766  66666654433 333333333332221111111  1356789999999976643322221   


Q ss_pred             CcCCCCcCCCCCeeEeeC----CCHHHHHHhcC-CCCeEEEEEccccCCCCccccCHHHHHHHHHH-HHHhCCEEEEecc
Q 013008          215 HYRSPFEPVMPGVNFVEY----GNIEATRKLIQ-PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA-CDDAGALLVFDEV  288 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~----~d~~~le~~l~-~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l-~~~~g~llI~DEv  288 (451)
                                -....+|.    +|++.+|+++. +..++.++|-|.++|+.++.++.+-.++|+.+ +...|..++.|.+
T Consensus       146 ----------iemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNA  215 (425)
T PF12897_consen  146 ----------IEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNA  215 (425)
T ss_dssp             -----------EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-T
T ss_pred             ----------cEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecC
Confidence                      12223333    28999999995 66899999999988887789999999999998 4568999999999


Q ss_pred             ccCCCcccc--cc-------cccccCCCcce----eeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHH
Q 013008          289 QCGLGRTGY--LW-------AHEHYGIFPDI----MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAA  355 (451)
Q Consensus       289 ~tg~gr~G~--~~-------~~~~~~~~pdi----~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa  355 (451)
                      |+=.-.++.  .-       .....| .||.    .+.||---.|-.++++.++++-++.+.......|.+.+-+.|..-
T Consensus       216 Y~vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRH  294 (425)
T PF12897_consen  216 YAVHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRH  294 (425)
T ss_dssp             TTT-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHH
T ss_pred             ceEeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCceeCccHHHHHHH
Confidence            863211111  00       011112 4553    467897656778999999988777765433344555566665554


Q ss_pred             HHHHHHhcChHHHHH------------------HHhCC----CCcceeccc-ceeEEEEe-cCChHHHHHHHHHCCceee
Q 013008          356 IAVLDKISNPAFLAS------------------KLARN----PHVKDVRGL-GLIIGIEF-DVSATPVVDACRDSGLLVL  411 (451)
Q Consensus       356 ~aal~~~~~~~~~~~------------------~~~~~----~~~~~v~g~-G~~~~~~~-~~~~~~~~~~l~~~Gv~~~  411 (451)
                      ..-+.-.+ .++.++                  +.+++    ....+..+. |.|++++. +.-+.++++.+.+.||.+.
T Consensus       295 vrff~d~~-gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G~AkrvV~lakeAGV~LT  373 (425)
T PF12897_consen  295 VRFFKDAE-GGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDGTAKRVVELAKEAGVALT  373 (425)
T ss_dssp             HHHHHSHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-HHHHHHHHHHTTEE--
T ss_pred             HHHhcChh-hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCChHHHHHHHHHHhCceeC
Confidence            44333211 022222                  22222    233444443 66777776 5568899999999999999


Q ss_pred             ecCC---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          412 TAGK---------GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       412 ~~~~---------~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      |.|.         ...||+.|++- +.||++.+++.+.-+++
T Consensus       374 ~AGAtfPyg~DP~D~nIRiAPS~P-~leel~~Am~~~~~cv~  414 (425)
T PF12897_consen  374 PAGATFPYGKDPRDSNIRIAPSYP-SLEELETAMDVFATCVK  414 (425)
T ss_dssp             -TTTTSGGG--TTS-EEEE--SSS--HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCcEEecCCCC-CHHHHHHHHHHHHHHHH
Confidence            8541         25799999876 88999999999887764

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.20  E-value=1.9e-09  Score=106.86  Aligned_cols=290  Identities=11%  Similarity=0.009  Sum_probs=160.9

Q ss_pred             CCHHHHHHHHHHHhhcccccC----CCC--C---HHHHHHHHHHhhccC---CCeEEecCC-HHHHHHHHHHHHHHHhhh
Q 013008          115 GDADWIKAVVDQANVLTHVSN----MYY--S---IPQIELAKRLVACSF---ADRVFFSNT-GTEANEAAIKFARKFQRH  181 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~----~~~--~---~~~~~l~~~l~~~~~---~e~v~~~~s-G~eA~~~al~~a~~~~~~  181 (451)
                      .++.|++|+.+.+..+.....    ..+  .   ....+..+.++++++   .+.|+|+++ ||+|++.++..+... . 
T Consensus        10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~-~-   87 (355)
T cd00611          10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGD-K-   87 (355)
T ss_pred             CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCC-C-
Confidence            578999999998755321100    111  1   236677888888887   346888866 999999999865310 0 


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee------CCC-HHHHHHhcCCCCeEEEEEcc
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE------YGN-IEATRKLIQPGKTAAVFVEP  254 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d-~~~le~~l~~~~~aavi~ep  254 (451)
                            ++++.| +..+-.|.+...+... +.            .+..++      +.+ .+..+..+. .++++|.+..
T Consensus        88 ------~~~~~i-~~g~~~~~~~~~a~~~-g~------------~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~lV~~~h  146 (355)
T cd00611          88 ------GTADYV-VTGAWSAKAAKEAKRY-GG------------VVVIVAAKEEGKYTKIPDVETWDLA-PDAAYVHYCS  146 (355)
T ss_pred             ------CeEEEE-ECCHHHHHHHHHHHhc-CC------------CcEEEecccccCCCCCCCHhhcCCC-CCCCEEEEeC
Confidence                  123333 3222222111011111 11            111121      112 222223333 4567776666


Q ss_pred             ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHh
Q 013008          255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVAS  334 (451)
Q Consensus       255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~  334 (451)
                      +-+.+|...+         ++++.||+++++|-+++ +|  +...-.+.++  .++.+--|.+| -..+|++++++++.+
T Consensus       147 ~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g--~~~idv~~~~--~~~ss~~K~lG-P~G~g~l~~~~~~~~  211 (355)
T cd00611         147 NETIHGVEFD---------EVPDTGGVPLVADMSSN-IL--SRPIDVSKFG--VIYAGAQKNLG-PAGVTVVIVRKDLLG  211 (355)
T ss_pred             CcccccEEcc---------eecccCCCeEEEEcccc-cc--CCCCCHHHhC--EEEeecccccC-CCceEEEEECHHHHh
Confidence            6555666422         45667999999999997 43  2222333333  23333448775 245788889998887


Q ss_pred             hccCCC-----------ccCCC-CCcHHHHHHHHHHHHHhcCh-HHHH---H----------HHhCCCCcc-ee---ccc
Q 013008          335 AINYGD-----------HGSTF-AGSPLVCNAAIAVLDKISNP-AFLA---S----------KLARNPHVK-DV---RGL  384 (451)
Q Consensus       335 ~~~~~~-----------~~~t~-~~~~~~~aaa~aal~~~~~~-~~~~---~----------~~~~~~~~~-~v---~g~  384 (451)
                      .+.+..           ...++ +.|.....+..++|+.+.+. ++..   +          .++.+|.+. ..   ...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~r  291 (355)
T cd00611         212 KARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRAR  291 (355)
T ss_pred             hcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHc
Confidence            654320           01112 33555677777888887554 3321   1          223443221 11   112


Q ss_pred             -ceeEEEEecCC--hHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          385 -GLIIGIEFDVS--ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       385 -G~~~~~~~~~~--~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                       +..+.|.++..  ..++...+.++|+...++.. .+.+|+++...+|+|||+++++.|+++
T Consensus       292 s~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         292 SRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             CceEEEEEcCChhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence             23455555321  24455677789997444422 367999999999999999999999874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.18  E-value=5.1e-09  Score=107.85  Aligned_cols=186  Identities=18%  Similarity=0.111  Sum_probs=111.7

Q ss_pred             CHHHHHHHHHHhhccC-C--------------CeEEecCCHHHHHHHHHHHHHHHhhhcC-C---C---C-------CCC
Q 013008          139 SIPQIELAKRLVACSF-A--------------DRVFFSNTGTEANEAAIKFARKFQRHSN-P---D---S-------KEP  189 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~-~--------------e~v~~~~sG~eA~~~al~~a~~~~~~~~-~---~---~-------~~~  189 (451)
                      +..+.++.++|++.++ .              ..-.|++|||+||..|+.+||....... .   .   +       ...
T Consensus       128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~  207 (522)
T TIGR03799       128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY  207 (522)
T ss_pred             HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence            3446666777776652 1              2367899999999999999996532110 0   0   0       001


Q ss_pred             CceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcC----CC-CeEEEEEccccCCC
Q 013008          190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQ----PG-KTAAVFVEPIQGEG  259 (451)
Q Consensus       190 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~----~~-~~aavi~ep~~~~~  259 (451)
                      +..+|+.+..-|.+..-+....+...         ..+..+|.+     |+++|+++|+    .+ .+.+|+........
T Consensus       208 ~~~~v~~S~~~H~S~~kaa~~lglg~---------~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~t  278 (522)
T TIGR03799       208 DGLAILVSERGHYSLGKAADVLGIGR---------DNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTET  278 (522)
T ss_pred             CceEEEECCCchHHHHHHHHHcCCCc---------ccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCC
Confidence            23356666666766654443332210         122233322     7899999885    22 23334433334457


Q ss_pred             CccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccceeeec--ccccCCccccccccc-HHHHhh
Q 013008          260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVT-EKVASA  335 (451)
Q Consensus       260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~  335 (451)
                      |.+-|    +++|.++|++||+++++|-+|.|....-..+.....++ ..|.++++  |.+.+.+.+|+++.+ +++.+.
T Consensus       279 GaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~  354 (522)
T TIGR03799       279 GNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSA  354 (522)
T ss_pred             CCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHH
Confidence            87777    99999999999999999999975321111011112354 67999887  877666788888775 455554


Q ss_pred             cc
Q 013008          336 IN  337 (451)
Q Consensus       336 ~~  337 (451)
                      +.
T Consensus       355 ~~  356 (522)
T TIGR03799       355 IE  356 (522)
T ss_pred             hc
Confidence            43

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.17  E-value=1.5e-08  Score=99.88  Aligned_cols=323  Identities=15%  Similarity=0.098  Sum_probs=179.6

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK  177 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~  177 (451)
                      .-|||+.|-.++   +-..++..+||..    +.-  .+..++...+|++..++++|.+.++++.+|..|...++++..+
T Consensus        41 dV~IDLrSDTgT---~apS~~m~aAM~~----GDD--~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~  111 (467)
T TIGR02617        41 DVFIDLLTDSGT---GAVTQSMQAAMMR----GDE--AYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK  111 (467)
T ss_pred             CeEEECccCCCC---CCCCHHHHHHHHc----CCc--ccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcc
Confidence            468999987663   2244667777664    111  1233445789999999999999999999999999999986652


Q ss_pred             HhhhcCCCCCCCCceEEE------EcCCccCCh-hhhhhccCCCCcCCC-CcCCCCCeeEeeC---CCHHHHHHhcCC--
Q 013008          178 FQRHSNPDSKEPATEFVS------FTNSFHGRT-MGALALTSKEHYRSP-FEPVMPGVNFVEY---GNIEATRKLIQP--  244 (451)
Q Consensus       178 ~~~~~~~~~~~~~~~ii~------~~~~yhg~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~d~~~le~~l~~--  244 (451)
                      .          +++.+++      +...||-.+ -+...++|....... -....+.. ..++   -|++.|++.|++  
T Consensus       112 ~----------~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~-~~~fkG~~dl~~le~~I~~~g  180 (467)
T TIGR02617       112 K----------REQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGV-RYDFKGNFDLEGLERGIEEVG  180 (467)
T ss_pred             c----------ccccccccccccccceEEEEecchHHHHHcCceeecccchhhccccc-CCCCCCCcCHHHHHHHHhhcC
Confidence            1          2333331      112222222 122233332110000 00000000 0011   189999999983  


Q ss_pred             -CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc----CC------Ccccccc---cccccCCCcce
Q 013008          245 -GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC----GL------GRTGYLW---AHEHYGIFPDI  310 (451)
Q Consensus       245 -~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t----g~------gr~G~~~---~~~~~~~~pdi  310 (451)
                       +++..+.+.-.++..|+.+.+.+.+++++++|++||+.++.|-+--    -|      +..|...   +.+.+ -..|.
T Consensus       181 ~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~-~~aDs  259 (467)
T TIGR02617       181 PNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETY-KYADM  259 (467)
T ss_pred             CCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhh-ccCCE
Confidence             4566666665566667778999999999999999999999997531    01      2222210   10111 13565


Q ss_pred             e--eecccccCCccccccc-cc-H---HHHhhccCC----CccCCCCCc-HHHHHHHHHHHHHhcChHHHHH--------
Q 013008          311 M--TLAKPLAGGLPIGAAL-VT-E---KVASAINYG----DHGSTFAGS-PLVCNAAIAVLDKISNPAFLAS--------  370 (451)
Q Consensus       311 ~--t~sK~lg~G~~iG~v~-~~-~---~i~~~~~~~----~~~~t~~~~-~~~~aaa~aal~~~~~~~~~~~--------  370 (451)
                      +  |+||.++  .|+|.++ ++ +   ++.+..+..    ...-||+|= .--+.|....|+...++++++.        
T Consensus       260 vt~slsKglg--ApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl  337 (467)
T TIGR02617       260 LAMSAKKDAM--VPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYL  337 (467)
T ss_pred             EEEEcCCCCC--CcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHH
Confidence            5  5677774  5766554 44 4   344443321    233466542 2223333334554445555544        


Q ss_pred             ---HH-hCCCCcceecccceeEEEEe----------cCChHHHHHHHH-HCCceeee-------c----CC-----CCEE
Q 013008          371 ---KL-ARNPHVKDVRGLGLIIGIEF----------DVSATPVVDACR-DSGLLVLT-------A----GK-----GNVV  419 (451)
Q Consensus       371 ---~~-~~~~~~~~v~g~G~~~~~~~----------~~~~~~~~~~l~-~~Gv~~~~-------~----~~-----~~~i  419 (451)
                         +. ..+|.+. +  .|.-+.++-          +-.+..++.+|. +-||-..-       .    +.     -..+
T Consensus       338 ~~~L~~~Gvpi~~-~--Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~  414 (467)
T TIGR02617       338 VNGLEEIGVVCQQ-A--GGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELL  414 (467)
T ss_pred             HHHHHhCCCcEEe-c--CccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCcccee
Confidence               22 2355443 2  233333332          134667777776 34543221       0    11     1457


Q ss_pred             EEeCCC-CCCHHHHHHHHHHHHHHHHHH
Q 013008          420 RLVPPL-IISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       420 ri~~~~-~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |+.+|- +-|.+++|..++++..+.++-
T Consensus       415 RlaipRrvyt~~h~d~v~~~~~~~~~~~  442 (467)
T TIGR02617       415 RLTIPRATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_pred             eeccccccccHhHHHHHHHHHHHHHhhh
Confidence            887664 569999999999999877653

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.09  E-value=3.7e-08  Score=93.54  Aligned_cols=168  Identities=15%  Similarity=0.148  Sum_probs=113.5

Q ss_pred             HHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcC
Q 013008          142 QIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR  217 (451)
Q Consensus       142 ~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  217 (451)
                      +..+|+.|.++=|    ++.|++|.|.+.|+...++++.+-          +++.|+++-|-|.-++.....+++...  
T Consensus       119 R~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~----------~~~GvliPiPQYPLYsAti~l~~~~~v--  186 (475)
T KOG0258|consen  119 RKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG----------KKTGVLIPIPQYPLYSATISLLGGTQV--  186 (475)
T ss_pred             HHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC----------CCCceEeecCCCchhHHHHHHhCCccc--
Confidence            7788888887755    679999999999999999988742          578899999999766533222222111  


Q ss_pred             CCCcCCCCCeeEeeCCCHHHHHHhcC----C-CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC-
Q 013008          218 SPFEPVMPGVNFVEYGNIEATRKLIQ----P-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-  291 (451)
Q Consensus       218 ~~~~~~~~~~~~~~~~d~~~le~~l~----~-~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-  291 (451)
                       +|.-.....+.   -|.++|++.++    . +-.++|+++|-|++|  .+.+++-+++|...|.+++++|+.||||.. 
T Consensus       187 -~YyLdEe~~W~---ld~~el~~~~~eA~k~i~~r~lvvINPGNPTG--qvls~e~ie~i~~fa~~~~l~llaDEVYQ~N  260 (475)
T KOG0258|consen  187 -PYYLDEESNWS---LDVAELERSVDEARKGINPRALVVINPGNPTG--QVLSEENIEGIICFAAEEGLVLLADEVYQDN  260 (475)
T ss_pred             -ceeeccccCCC---CCHHHHHHHHHHHhccCCceEEEEECCCCccc--hhhcHHHHHHHHHHHHHcCeEEechHHHHhh
Confidence             11100111111   16788877775    1 235678888877765  567999999999999999999999999876 


Q ss_pred             CCccc-cccccc----ccC-CCcc---ee---eecccccC--Cccccccc
Q 013008          292 LGRTG-YLWAHE----HYG-IFPD---IM---TLAKPLAG--GLPIGAAL  327 (451)
Q Consensus       292 ~gr~G-~~~~~~----~~~-~~pd---i~---t~sK~lg~--G~~iG~v~  327 (451)
                      ....+ +++++.    +.| -.+|   +.   +.||++.|  |.+.|++=
T Consensus       261 vy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmE  310 (475)
T KOG0258|consen  261 VYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYME  310 (475)
T ss_pred             ccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeee
Confidence            32334 333332    122 2343   22   45898875  88889863

>PLN02271 serine hydroxymethyltransferase

Probab=99.02  E-value=1.1e-07  Score=96.69  Aligned_cols=260  Identities=14%  Similarity=0.096  Sum_probs=142.2

Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc-cCCCCcCCCCcCCCCCeeEee--CC-
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMPGVNFVE--YG-  233 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~-  233 (451)
                      |... ||+.||.+++..+.           .|+|+|+..+..+-|+....... .+...-.     ..-.+..++  .+ 
T Consensus       218 VQp~-SGs~AN~aV~~ALl-----------~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~-----sG~~~~~vpY~~d~  280 (586)
T PLN02271        218 VQPY-SCTSANFAVYTGLL-----------LPGDRIMGLDSPSGGHMSHGYYTPGGKKVSG-----ASIFFESLPYKVNP  280 (586)
T ss_pred             eeec-cHHHHHHHHHHHhc-----------CCCCEEEEecCCCCCchhccccccccccccc-----ccceEEEEEccccc
Confidence            4444 89999999998665           27999999988776664332111 0000000     000112222  11 


Q ss_pred             -----CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCc
Q 013008          234 -----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP  308 (451)
Q Consensus       234 -----d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p  308 (451)
                           |.+++++.....++++|++......  ...+    +++++++|+++|++|++|-+|. .|-........-+ ...
T Consensus       281 ~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP~-~~a  352 (586)
T PLN02271        281 QTGYIDYDKLEEKALDFRPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNPF-DYC  352 (586)
T ss_pred             ccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCCC-cCC
Confidence                 7899998665567889998664332  1334    8999999999999999999995 3222111000111 136


Q ss_pred             ceeeec--ccccCCcccccccccHH--------------------HHhhccCCCccCCCCCcHHH-HHHHHHHHHHhcCh
Q 013008          309 DIMTLA--KPLAGGLPIGAALVTEK--------------------VASAINYGDHGSTFAGSPLV-CNAAIAVLDKISNP  365 (451)
Q Consensus       309 di~t~s--K~lg~G~~iG~v~~~~~--------------------i~~~~~~~~~~~t~~~~~~~-~aaa~aal~~~~~~  365 (451)
                      |+++.+  |+|.|- +.|.++.+++                    +.+.+....+.+..+++... .++...+++....+
T Consensus       353 Dvvt~TTHKtLrGP-rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~  431 (586)
T PLN02271        353 DIVTSTTHKSLRGP-RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATP  431 (586)
T ss_pred             cEEEeCCcccCCCC-CceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhCh
Confidence            887665  888652 3366666643                    33333322222222222222 33333445544444


Q ss_pred             HH---HHH-------HH-----hCCCCcceecccceeEEEEec---CChHHHHHHHHHCCceeee----cC----CCCEE
Q 013008          366 AF---LAS-------KL-----ARNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLT----AG----KGNVV  419 (451)
Q Consensus       366 ~~---~~~-------~~-----~~~~~~~~v~g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~----~~----~~~~i  419 (451)
                      ++   .++       ++     ..++.+..-. ...++++++.   .......+.|-+.||.+..    +.    .+..+
T Consensus       432 efk~Ya~QVv~NAkaLA~~L~~~G~~vv~ggT-dnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGi  510 (586)
T PLN02271        432 EYKAYMQQVKKNAQALASALLRRKCRLVTGGT-DNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGV  510 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCeEeeCCC-CcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcc
Confidence            33   222       21     2222222111 2345666663   2355566666667887642    21    12347


Q ss_pred             EEeCC----CCCCHHHHHHHHHHHHHHHH
Q 013008          420 RLVPP----LIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       420 ri~~~----~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ||-.+    ....++|++++.+.|.++++
T Consensus       511 RiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        511 RIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             cccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            87544    34567999999998888876

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.97  E-value=2e-07  Score=89.33  Aligned_cols=306  Identities=18%  Similarity=0.196  Sum_probs=171.9

Q ss_pred             CCCHHHHHHHHHHHhh-cccccC---CC-CCH---HHHHHH-HHHhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcC
Q 013008          114 HGDADWIKAVVDQANV-LTHVSN---MY-YSI---PQIELA-KRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSN  183 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~-~~~~~~---~~-~~~---~~~~l~-~~l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~  183 (451)
                      +..|.|.+|.-..+.. +..++.   +| .++   ..+.|+ ++..++++.+.+=+ -.||+.||.+++.++..      
T Consensus        37 ~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~------  110 (413)
T COG0112          37 FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQ------  110 (413)
T ss_pred             cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcC------
Confidence            3678899988776643 332211   11 222   233333 33445567553322 35799999999997773      


Q ss_pred             CCCCCCCceEEEEcCCccCChhhhh--hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc-cCCCC
Q 013008          184 PDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QGEGG  260 (451)
Q Consensus       184 ~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~-~~~~G  260 (451)
                           |+|+|+..+-..-|+..-..  ..+|.. +.....+..++...+   |.|+++++....+++.||+=-. ++-  
T Consensus       111 -----pGDtimgm~l~~GGHltHg~~v~~sG~~-~~~v~Y~vd~et~~I---DyD~~~k~a~e~kPK~ii~G~SaY~r--  179 (413)
T COG0112         111 -----PGDTIMGLDLSHGGHLTHGSPVNFSGKL-FNVVSYGVDPETGLI---DYDEVEKLAKEVKPKLIIAGGSAYSR--  179 (413)
T ss_pred             -----CCCeEecccCCCCCcccCCCCCCcccee-EEeEecccccccCcc---CHHHHHHHHHHhCCCEEEECcccccc--
Confidence                 79999988766655543221  122211 111111222221111   7899999888667788877432 211  


Q ss_pred             ccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCcceeeec--ccccCCccccccccc-HHHHhhc
Q 013008          261 IYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAI  336 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~  336 (451)
                       ..+    +++++++|++.|++|++|=+| .|+--.|.. . .-.. ..|++|-+  |+|-| -+.|.|+++ +++.+.+
T Consensus       180 -~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~~-p-~P~~-~AdvVTtTTHKTlrG-PrGG~Il~~~eel~kki  250 (413)
T COG0112         180 -PID----FKRFREIADEVGAYLMVDMAHVAGLIAGGVH-P-NPLP-HADVVTTTTHKTLRG-PRGGIILTNDEELAKKI  250 (413)
T ss_pred             -ccC----HHHHHHHHHHhCceEEehHHHHHHHHhcccC-C-CCCC-ccceEeCCcccCCCC-CCceEEEeccHHHHHHh
Confidence             233    899999999999999999998 555333321 1 1111 26777654  88864 466888888 4898888


Q ss_pred             cCCCccCCCCCcHHHHHHHHH-HHHHhcChH---HHHH-------HHhCCC--Ccceecc--cceeEEEEec---CChHH
Q 013008          337 NYGDHGSTFAGSPLVCNAAIA-VLDKISNPA---FLAS-------KLARNP--HVKDVRG--LGLIIGIEFD---VSATP  398 (451)
Q Consensus       337 ~~~~~~~t~~~~~~~~aaa~a-al~~~~~~~---~~~~-------~~~~~~--~~~~v~g--~G~~~~~~~~---~~~~~  398 (451)
                      +..-+.+..+++-+-..||.+ ++....+++   +.++       +++.+.  .+..+.|  ...++.+++.   ....+
T Consensus       251 n~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~  330 (413)
T COG0112         251 NSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKK  330 (413)
T ss_pred             hhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHH
Confidence            765556666655433333332 233333333   2222       222211  2222222  1235566663   23455


Q ss_pred             HHHHHHHCCceee----ecCC-----CCEEEEeCCC----CCCHHHHHHHHHHHHHHHHH
Q 013008          399 VVDACRDSGLLVL----TAGK-----GNVVRLVPPL----IISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       399 ~~~~l~~~Gv~~~----~~~~-----~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ....|-+.||.+.    |...     ..-||+-.+.    ...++|++++.+.|.++++.
T Consensus       331 ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         331 AEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             HHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence            5555656688765    2211     2347886553    34678999999988888865

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.95  E-value=3.4e-07  Score=85.32  Aligned_cols=318  Identities=18%  Similarity=0.103  Sum_probs=183.1

Q ss_pred             ecCCCEEEeeccCcccccCCCCCHHHHHHHHH-HHhhcccc---cC----CCCCHHHHHHHHHHhhccC--CCeEEecCC
Q 013008           94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVD-QANVLTHV---SN----MYYSIPQIELAKRLVACSF--ADRVFFSNT  163 (451)
Q Consensus        94 d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~-~~~~~~~~---~~----~~~~~~~~~l~~~l~~~~~--~e~v~~~~s  163 (451)
                      +.+|--|||-.      +||..++.+.+...+ +.++++..   ++    .......+.|..+|+-+.|  ..+|.+++|
T Consensus        28 lp~~viyLdgn------SLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dt  101 (407)
T COG3844          28 LPGGVIYLDGN------SLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDT  101 (407)
T ss_pred             CCCCeEEeecc------ccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCC
Confidence            45677888844      388655455554444 44444322   11    1112235567777777777  668888887


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC
Q 013008          164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ  243 (451)
Q Consensus       164 G~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  243 (451)
                      .+--+...+-++...+         ++++||+++......-.....  +.....    +..-+...+  .+++++++++.
T Consensus       102 ts~nl~k~L~aalr~~---------~~r~vIv~E~~~fpTdly~a~--g~~~~~----~~~~~~~~~--~~P~~~~~~~~  164 (407)
T COG3844         102 TSINLFKVLAAALRPQ---------EGRRVIVSEGDNFPTDLYIAE--GLADLL----GIGYDLEGV--IAPRALEEAIT  164 (407)
T ss_pred             cchHHHHHHHHHhccC---------CCceEEeecCCCCCcchhhhc--chhhhh----cccccceee--eChHHHHHhhc
Confidence            6655555554444322         367788887765433221111  000000    000111111  15678888886


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc--CCCcceeeecccccCC-
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY--GIFPDIMTLAKPLAGG-  320 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~--~~~pdi~t~sK~lg~G-  320 (451)
                      + +++.|++..++--+|-...    +.+|.+++++||++++.|=+|+ -   |. ...+..  |...-|-|-=|.|+|| 
T Consensus       165 d-d~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs-a---Ga-vp~~Lh~~gaDfaigcsyKYLNgGP  234 (407)
T COG3844         165 D-DVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS-A---GA-VPVDLHAAGADFAIGCSYKYLNGGP  234 (407)
T ss_pred             c-ceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc-c---CC-cceeecccCCCeeeeeeceeccCCC
Confidence            4 7999999999999998877    9999999999999999999996 2   21 122222  3333344555999764 


Q ss_pred             -cccccccccHHHHhhccC---C-----------------CccCCC-C--CcHHHHHHHHHHHHHhcChH---HHHH---
Q 013008          321 -LPIGAALVTEKVASAINY---G-----------------DHGSTF-A--GSPLVCNAAIAVLDKISNPA---FLAS---  370 (451)
Q Consensus       321 -~~iG~v~~~~~i~~~~~~---~-----------------~~~~t~-~--~~~~~~aaa~aal~~~~~~~---~~~~---  370 (451)
                       -|.+..+.+ +..+...+   +                 ....-| .  .+.+++++...+|++..+-+   +.++   
T Consensus       235 Gapa~l~v~~-~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSla  313 (407)
T COG3844         235 GAPAGLFVAP-RHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLA  313 (407)
T ss_pred             CCceeEEecc-ccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhH
Confidence             444433333 33332211   0                 001111 1  13456667777888764432   2222   


Q ss_pred             -------HHh-CCC--Cccee-----cccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeC-CCCCCHHHHHH
Q 013008          371 -------KLA-RNP--HVKDV-----RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP-PLIISEQELDQ  434 (451)
Q Consensus       371 -------~~~-~~~--~~~~v-----~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~-~~~~t~e~i~~  434 (451)
                             +.+ +.+  ...-+     ...|.-+.+.+ ..+.++.+.|.++||+.--.. ++++||.| |+-.+-+|+=.
T Consensus       314 LTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~h-p~~~~V~qaLi~rGVigD~R~-P~vlRfgftPlY~~~~DVw~  391 (407)
T COG3844         314 LTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYH-PHGYQVMQALIDRGVIGDFRE-PDVLRFGFTPLYVSFVDVWD  391 (407)
T ss_pred             HHHHHHHHHHhccccCCcEEeccchhhhccceeeEec-CcHHHHHHHHHHcCccccccC-CCeeeecCccceechhHHHH
Confidence                   111 111  11111     12344444443 357889999999999765443 48999976 67789999999


Q ss_pred             HHHHHHHHHHHHh
Q 013008          435 AVEILCKTLPVLD  447 (451)
Q Consensus       435 ~l~~l~~~l~~~~  447 (451)
                      +++.|.+++++..
T Consensus       392 AV~~L~evL~t~a  404 (407)
T COG3844         392 AVDALEEVLDTLA  404 (407)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999998753

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.95  E-value=1.2e-07  Score=90.47  Aligned_cols=256  Identities=17%  Similarity=0.189  Sum_probs=145.4

Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHH
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA  237 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  237 (451)
                      .+=|.|||-|+..+-..+..+.         ++..|.+.+|++..+.......+. .....+|.  ......+   |.+.
T Consensus        97 t~Qt~GGTGAL~~~A~fl~~~~---------~~~~vwis~PtW~NH~~If~~aGl-~v~~Y~Yy--d~~~~~~---df~~  161 (396)
T COG1448          97 TVQTLGGTGALRVAADFLARFF---------PDATVWISDPTWPNHKAIFEAAGL-EVETYPYY--DAETKGL---DFDG  161 (396)
T ss_pred             heecCCcchHHHHHHHHHHHhC---------CCceEEeCCCCcHhHHHHHHhcCC-ceeeeecc--ccccccc---cHHH
Confidence            3457899999999888776554         467799999999777543333322 11111111  1111122   4444


Q ss_pred             HHHhcC-CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC------Ccce
Q 013008          238 TRKLIQ-PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI------FPDI  310 (451)
Q Consensus       238 le~~l~-~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~------~pdi  310 (451)
                      +-..|+ -..-.+|++-+-.+|+.++-++.+.+++|.++.++.+.+-++|=+|-||+...   -.+.+++      .+.+
T Consensus       162 mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~Gl---eeDa~~lR~~a~~~~~~  238 (396)
T COG1448         162 MLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGL---EEDAYALRLFAEVGPEL  238 (396)
T ss_pred             HHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccch---HHHHHHHHHHHHhCCcE
Confidence            444443 11223455554433333356899999999999999999999999999996432   2222221      2323


Q ss_pred             -e--eecccccC-Ccccccccc---cHHHHhhccCC---CccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008          311 -M--TLAKPLAG-GLPIGAALV---TEKVASAINYG---DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       311 -~--t~sK~lg~-G~~iG~v~~---~~~i~~~~~~~---~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------  370 (451)
                       +  ++||.+|- |-|+|++..   +++..+.+...   ....+|+.+|--=++..+  .++.++++.+.          
T Consensus       239 lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva--~IL~~p~Lra~W~~El~~Mr~  316 (396)
T COG1448         239 LVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVA--TILNNPELRAEWEQELEEMRQ  316 (396)
T ss_pred             EEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHH--HHhCCHHHHHHHHHHHHHHHH
Confidence             3  68899985 788887643   45555544321   234566654432222222  23344433322          


Q ss_pred             ------------HHhCCC--Ccc-eecccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHH
Q 013008          371 ------------KLARNP--HVK-DVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQ  434 (451)
Q Consensus       371 ------------~~~~~~--~~~-~v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~  434 (451)
                                  +.+..+  ... -....|+|...-   ...+-+.+|+ +.||++...|     |++++ .+++..|+.
T Consensus       317 Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~G---ls~~QV~rLree~~IY~v~sG-----Ri~va-Gl~~~ni~~  387 (396)
T COG1448         317 RILEMRQALVDALKALGAPRNFDFIISQRGMFSYTG---LSPEQVDRLREEFGIYLVASG-----RINVA-GLNTSNIDY  387 (396)
T ss_pred             HHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCC---CCHHHHHHHHHhccEEEecCC-----eeeec-cCChhhHHH
Confidence                        112111  011 133456553322   2334445565 5699988664     67655 668899999


Q ss_pred             HHHHHHHH
Q 013008          435 AVEILCKT  442 (451)
Q Consensus       435 ~l~~l~~~  442 (451)
                      +++.|.++
T Consensus       388 va~ai~~v  395 (396)
T COG1448         388 VAKAIAAV  395 (396)
T ss_pred             HHHHHHhh
Confidence            99998775

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=98.86  E-value=3.7e-07  Score=92.59  Aligned_cols=205  Identities=18%  Similarity=0.099  Sum_probs=122.4

Q ss_pred             CCHHHHHHHHHHHhhcccccCCC--CCHHHHHHHHHHhhccCC-C--eEEecCCHHHHHHHHHHHHHHHhhhcCC--CCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMY--YSIPQIELAKRLVACSFA-D--RVFFSNTGTEANEAAIKFARKFQRHSNP--DSK  187 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~-e--~v~~~~sG~eA~~~al~~a~~~~~~~~~--~~~  187 (451)
                      .++...+++...+.+.......+  ......++...+++.++. +  .-.||+||||||..|+.++|..+.....  ...
T Consensus        74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~  153 (460)
T COG0076          74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK  153 (460)
T ss_pred             CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            45666677777666532211122  223366777778887763 3  5789999999999999999976642110  000


Q ss_pred             CCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCCHHHHHHhcCCCCeEE-EEEccccCCCCccccC
Q 013008          188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAA-VFVEPIQGEGGIYSAT  265 (451)
Q Consensus       188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~aa-vi~ep~~~~~G~~~~~  265 (451)
                      ..+...|+.....|-+..-+..+-|-....   .+..+. ...    |+++|++++++..+.. |+..--....|.+=+ 
T Consensus       154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~---v~~~~~~~~i----d~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDd-  225 (460)
T COG0076         154 PGGKPNIVCSETAHFSFEKAARYLGLGLRR---VPTVPTDYRI----DVDALEEAIDENTIGGVVVGTAGTTDTGSIDD-  225 (460)
T ss_pred             cCCCCeEEecCcchhHHHHHHHHhCCCcee---EEeccCcccc----CHHHHHHHHHhhccCceEEEEecCCCCCccCC-
Confidence            011225666667787766555544322111   122221 111    8999999998655442 443333344455555 


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeccccCCCcc--cccccccccCC-Ccceeeec--ccccCCcccccccccHH
Q 013008          266 KEFLQFLRDACDDAGALLVFDEVQCGLGRT--GYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTEK  331 (451)
Q Consensus       266 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~--G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~~  331 (451)
                         +++|.++|+++|+++++|-++.||-..  ...+.+ .+++ ..|-++++  |.+..-++.|+++.+++
T Consensus       226 ---i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~-~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~  292 (460)
T COG0076         226 ---IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW-DFGLEGVDSITVDGHKYGLAPIGCGVVLFRDE  292 (460)
T ss_pred             ---HHHHHHHHHHcCCcEEEEccccceeecccCccchh-hcCCCCceEEEECcccccCCCCCceEEEEECH
Confidence               999999999999999999999886321  111110 1234 45666666  65544578889888644

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.84  E-value=1.3e-07  Score=93.28  Aligned_cols=266  Identities=18%  Similarity=0.236  Sum_probs=134.4

Q ss_pred             HHhhccCCC----eEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC-----C-CCc
Q 013008          148 RLVACSFAD----RVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-----K-EHY  216 (451)
Q Consensus       148 ~l~~~~~~e----~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-----~-~~~  216 (451)
                      +..+.++.+    .+-+ ..||+.||..++.++..           ++|+|+.++...-|+..-......     . ..+
T Consensus        74 ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~-----------pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~  142 (399)
T PF00464_consen   74 RAKELFGAEPKEWYANVQPHSGSQANLAVYMALLK-----------PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYF  142 (399)
T ss_dssp             HHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT------------TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHS
T ss_pred             HHHHHhCCCcccceEEeecCCchHHHHHHHHHHHh-----------hcCcEEecChhhcccccccccccccccccccceE
Confidence            344556655    3322 46799999999987663           799999998766444322111100     0 000


Q ss_pred             CCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCcc
Q 013008          217 RSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRT  295 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~  295 (451)
                      .....+..++...+   |.++++++++..++++||+....-.     .+.+ +++++++|++.|++|++|=.|. |+--.
T Consensus       143 ~~~~y~~d~~~~~I---D~d~l~~~a~~~kPklIi~G~S~y~-----~~~d-~~~~reIad~vga~l~~D~sH~~GLIa~  213 (399)
T PF00464_consen  143 ESVPYPVDPDTGLI---DYDELEKLAKEHKPKLIICGASSYP-----RPID-FKRFREIADEVGAYLMADISHIAGLIAG  213 (399)
T ss_dssp             EEEEEEB-TTTSSB----HHHHHHHHHHH--SEEEEE-SSTS-----S----HHHHHHHHHHTT-EEEEE-TTTHHHHHT
T ss_pred             EEEeeeeecCCCeE---CHHHHHHHHhhcCCCEEEECchhcc-----CccC-HHHHHHHHHhcCcEEEecccccccceeh
Confidence            00000111111111   7899999988667889999775422     1222 7999999999999999999984 44222


Q ss_pred             cccccccccCCCcceeeec--ccccCCccccccccc--------------HHHHhhccCCCccCCCCCcHHHHHHHH-HH
Q 013008          296 GYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT--------------EKVASAINYGDHGSTFAGSPLVCNAAI-AV  358 (451)
Q Consensus       296 G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~--------------~~i~~~~~~~~~~~t~~~~~~~~aaa~-aa  358 (451)
                      |. + ..-+. ..|++|.|  |+|.| -+.|.|+++              +++.+.+....+.+..+++-+-..|++ .+
T Consensus       214 g~-~-~~P~~-~ADvvt~sThKtl~G-PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAva  289 (399)
T PF00464_consen  214 GL-F-PNPFP-YADVVTGSTHKTLRG-PRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVA  289 (399)
T ss_dssp             TS-S---GCC-TSSEEEEESSGGG-S-SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHH
T ss_pred             he-e-cCccc-cceEEEeeccccccc-cCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHH
Confidence            22 1 11223 27888776  88864 466888888              788887764433333333323222222 33


Q ss_pred             HHHhcChH---HHHH-------HH----h-CCCCcceecccceeEEEEec---CChHHHHHHHHHCCceeeec----CC-
Q 013008          359 LDKISNPA---FLAS-------KL----A-RNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTA----GK-  415 (451)
Q Consensus       359 l~~~~~~~---~~~~-------~~----~-~~~~~~~v~g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~----~~-  415 (451)
                      +.....++   +.++       +.    + .+..+... ....++++++.   .......+.|.+.||.+...    .. 
T Consensus       290 l~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~gg-Td~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~  368 (399)
T PF00464_consen  290 LKEALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGG-TDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRS  368 (399)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS--SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTST
T ss_pred             HhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECC-CCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCC
Confidence            44433332   2222       21    1 22222111 12446777773   34567777888889988532    11 


Q ss_pred             ---CCEEEEeCC----CCCCHHHHHHHHHH
Q 013008          416 ---GNVVRLVPP----LIISEQELDQAVEI  438 (451)
Q Consensus       416 ---~~~iri~~~----~~~t~e~i~~~l~~  438 (451)
                         +..+|+..+    ....++|++++.+.
T Consensus       369 ~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~  398 (399)
T PF00464_consen  369 PFVPSGLRLGTPALTRRGMKEEDMKEIAEL  398 (399)
T ss_dssp             TTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred             CCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence               246898644    34567777766654

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.77  E-value=3.7e-06  Score=92.09  Aligned_cols=294  Identities=11%  Similarity=0.079  Sum_probs=158.0

Q ss_pred             CCC-CCHHHHHHHHHHHhhcccccCCCCCH-------HHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhh
Q 013008          112 LGH-GDADWIKAVVDQANVLTHVSNMYYSI-------PQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRH  181 (451)
Q Consensus       112 lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~  181 (451)
                      .+| .++.|.+++.+..+-++.+ +.|..+       ...++...+++++|  .+++-++.++|.+.++++...+ ++. 
T Consensus       113 y~~~~P~~v~~~i~~~~~~~Tay-tPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~-~~~-  189 (993)
T PLN02414        113 YNTHVPPVILRNILENPGWYTQY-TPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNN-ILK-  189 (993)
T ss_pred             CCccCCHHHHHHHHhChHHHhhc-CCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHh-ccc-
Confidence            344 5566668888766543322 223222       14466677888888  4579999999999997776443 221 


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGI  261 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~  261 (451)
                            .++++|++.+..|... ...+..-.        ....-.+..++..+.+    . ..+.+++++ ..+.+..|.
T Consensus       190 ------g~~~~VlVs~~~hP~~-~~v~~t~a--------~~~GieV~~v~~~~~~----~-~~~~v~~vl-vq~P~~~G~  248 (993)
T PLN02414        190 ------GKKKKFLIASNCHPQT-IDVCQTRA--------DGLGLEVVVADEKDFD----Y-SSGDVCGVL-VQYPATDGE  248 (993)
T ss_pred             ------CCCCEEEEcCccCHhH-HHHHHHhh--------hhcCCEEEEecchhhc----c-ccCceEEEE-EecCCCCeE
Confidence                  0256788877766443 33322100        1111234444432211    1 123455555 334455677


Q ss_pred             cccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec-cccc-----CCcccccccccHHHHhh
Q 013008          262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA-KPLA-----GGLPIGAALVTEKVASA  335 (451)
Q Consensus       262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s-K~lg-----~G~~iG~v~~~~~i~~~  335 (451)
                      +.+    +++|.++|+++|+++|+ -++. ++-.+. -....  +..|+++.+ ..++     ||-..|++.+++++...
T Consensus       249 v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~l-~~pge--~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~  319 (993)
T PLN02414        249 VLD----YAEFVKNAHANGVKVVM-ATDL-LALTML-KPPGE--WGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRL  319 (993)
T ss_pred             EcC----HHHHHHHHHHcCCEEEE-EECH-HHhcCC-CCHhh--ccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhh
Confidence            777    99999999999999999 3321 211111 01222  346776542 3333     45448888898887664


Q ss_pred             ccCC--C--------ccC--------------CCCCcHHHHHHHHHHHH-----HhcChHH---HHH-------HHhCCC
Q 013008          336 INYG--D--------HGS--------------TFAGSPLVCNAAIAVLD-----KISNPAF---LAS-------KLARNP  376 (451)
Q Consensus       336 ~~~~--~--------~~~--------------t~~~~~~~~aaa~aal~-----~~~~~~~---~~~-------~~~~~~  376 (451)
                      +...  .        ...              ....|..+..+..+++.     .+...++   .++       +.+++.
T Consensus       320 ~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~  399 (993)
T PLN02414        320 MPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLK  399 (993)
T ss_pred             CCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence            4311  0        000              00122212222222221     1111211   111       222211


Q ss_pred             --Ccceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          377 --HVKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       377 --~~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                        .+..... .--.+.+.++ ...++.++|.++||.+..... +.+|+++....|++|||.+++.|.
T Consensus       400 ~~G~~~~~~~~f~~vt~~~~-~~~~v~~~L~~~gI~l~~~~~-~~lrvs~~e~~T~edId~L~~~l~  464 (993)
T PLN02414        400 KLGFQVQSLPFFDTVKVKCS-DADAIADAAAKVGINLRVVDA-NTVTVSFDETTTLEDVDKLFKVFA  464 (993)
T ss_pred             hcCCccCCCCCcCeEEEecC-CHHHHHHHHHHCCCeeEEecC-CeEEEEeeccCCHHHHHHHHHHHc
Confidence              1111111 1112233333 457899999999998876644 679999999999999999999996

>PLN02452 phosphoserine transaminase

Probab=98.74  E-value=1.9e-06  Score=85.15  Aligned_cols=297  Identities=9%  Similarity=0.006  Sum_probs=170.6

Q ss_pred             CCHHHHHHHHHHHhhccc-c------cCCC--CCHHHHHHHHHHhhccC-CC--eE-EecCCHHHHHHHHHHHHHHHhhh
Q 013008          115 GDADWIKAVVDQANVLTH-V------SNMY--YSIPQIELAKRLVACSF-AD--RV-FFSNTGTEANEAAIKFARKFQRH  181 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~-~------~~~~--~~~~~~~l~~~l~~~~~-~e--~v-~~~~sG~eA~~~al~~a~~~~~~  181 (451)
                      -+++|.+++.+.+-++.. +      +...  ......+..+.|.++++ ++  +| ++..||+.++++++.-+..    
T Consensus        18 lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~----   93 (365)
T PLN02452         18 LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCK----   93 (365)
T ss_pred             CCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCC----
Confidence            578899998887543211 0      0011  11235667777777776 22  44 5557789999999886552    


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCC
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG  260 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G  260 (451)
                             +++++++...++.|....-.... +.....  ...  +...+....++++++   .+.+...|.+.......|
T Consensus        94 -------~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~--~~~--~~~~~~~~~~~~~~~---~~~~~~~v~~~hnETstG  159 (365)
T PLN02452         94 -------PGDKADFVVTGSWSKKAAKEAKKYCKTNVI--ASG--KDEKYTKIPSVSEWE---LTPDAKFVHICANETIHG  159 (365)
T ss_pred             -------CCCeEEEEECCHHHHHHHHHHHHhCCCcEE--Eec--CCCCCCCCCChHHcC---CCCCCcEEEECCCCCCCc
Confidence                   46778887777666543322211 111100  000  000011112444432   133566777666666667


Q ss_pred             ccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC-
Q 013008          261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG-  339 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~-  339 (451)
                      +...+   ++++   +   ++++|+|-+.+ +|  +...-.+.+++  |+.+--|.+|. -.+|.+++++++.+...+. 
T Consensus       160 v~~~~---~~~i---~---~~~lvVDa~Ss-~g--~~pidv~~~~v--~~~saqK~lGP-~Gl~~v~vr~~~l~~~~~~~  224 (365)
T PLN02452        160 VEFKD---YPDV---G---NVPLVADMSSN-FL--SKPVDVSKYGV--IYAGAQKNVGP-SGVTIVIIRKDLIGNARPIT  224 (365)
T ss_pred             EecCc---cccc---C---CCeEEEECCcc-cc--CcccCHHHcCE--EEEecccccCC-CCeEEEEEcHHHHhhcccCC
Confidence            63222   3333   2   38999999986 42  33334455554  66666799963 2378888999988765432 


Q ss_pred             ----------CccCCC-CCcHHHHHHHHHHHHHhcCh-HHH---HH----------HHhCCCCc-ce-ec---ccceeEE
Q 013008          340 ----------DHGSTF-AGSPLVCNAAIAVLDKISNP-AFL---AS----------KLARNPHV-KD-VR---GLGLIIG  389 (451)
Q Consensus       340 ----------~~~~t~-~~~~~~~aaa~aal~~~~~~-~~~---~~----------~~~~~~~~-~~-v~---g~G~~~~  389 (451)
                                ....++ +.|.....+..++|+.+.++ ++.   ++          .+++.+.+ .. +.   .....+.
T Consensus       225 ~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vs  304 (365)
T PLN02452        225 PGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVP  304 (365)
T ss_pred             CchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEE
Confidence                      112333 34556677777888887653 222   11          22333322 11 11   1123444


Q ss_pred             EEec--CChHHHHHHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          390 IEFD--VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       390 ~~~~--~~~~~~~~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      |.++  ....+|.+.+.++|+...++..  ++ +|++.=-.++.|+++.+++.+++.-++
T Consensus       305 F~~~~~~~~~~f~~~~~~~g~~~~~G~r~~gg-~R~s~yna~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        305 FTLGGSELEAEFVKEAAKAGMVQLKGHRSVGG-MRASIYNAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             EEcCCchhHHHHHHHHHHCCCcccCCccccCc-eEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            5442  2467899999999999988754  34 899888899999999999999887543

>PRK15029 arginine decarboxylase; Provisional

Probab=98.74  E-value=1.8e-06  Score=91.92  Aligned_cols=159  Identities=19%  Similarity=0.099  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhccCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCC
Q 013008          142 QIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~-v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~  219 (451)
                      ..+..+..++.++.++ .+.+||.|.+|.+++..+..           ++|+||+ +..-|-+...++.+++. +.|..+
T Consensus       207 I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~-----------~gd~Vlv-~RN~HKSv~~al~L~ga~Pvyl~P  274 (755)
T PRK15029        207 FGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT-----------DNDVVVV-DRNCHKSIEQGLILTGAKPVYMVP  274 (755)
T ss_pred             HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcC-----------CCCEEEe-ecccHHHHHHHHHHcCCeEEEecc
Confidence            4455555666788664 55677788888887776662           5666665 55668888888887753 333322


Q ss_pred             CcCCCCCee-Eee--CCCHHHHHHhcCC--CCe--------EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEe
Q 013008          220 FEPVMPGVN-FVE--YGNIEATRKLIQP--GKT--------AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD  286 (451)
Q Consensus       220 ~~~~~~~~~-~~~--~~d~~~le~~l~~--~~~--------aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D  286 (451)
                      -.. .-++. .++  +-+.+.++++|+.  ...        ++|++.|.+  .|....    +++|.++|+++|++|++|
T Consensus       275 ~~~-~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvD  347 (755)
T PRK15029        275 SRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLHFD  347 (755)
T ss_pred             ccc-ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEEEE
Confidence            110 01110 011  0137889888862  111        566666643  354555    899999999999999999


Q ss_pred             ccccCCCcccccccc-ccc-----C-CCcc-eeeec--ccccC
Q 013008          287 EVQCGLGRTGYLWAH-EHY-----G-IFPD-IMTLA--KPLAG  319 (451)
Q Consensus       287 Ev~tg~gr~G~~~~~-~~~-----~-~~pd-i~t~s--K~lg~  319 (451)
                      |+|.+.-.....+.. ...     . ..+| +++-|  |.+++
T Consensus       348 EAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a  390 (755)
T PRK15029        348 EAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA  390 (755)
T ss_pred             CccccccccCccccccccccccccccCCCceEEEEchhhcccc
Confidence            998653223332221 111     1 3477 67666  77753

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.71  E-value=7.4e-07  Score=86.46  Aligned_cols=227  Identities=14%  Similarity=0.081  Sum_probs=142.1

Q ss_pred             cCCC--CCHHHHHHHHHHHhhcccc----cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 013008          111 ALGH--GDADWIKAVVDQANVLTHV----SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       111 ~lG~--~~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      ++|-  -+|++.+++.+.+..+..-    ..+....-...+++.++...+.+.+.++|.-+.|+..++....        
T Consensus        33 ~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~--------  104 (395)
T COG1921          33 NLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALA--------  104 (395)
T ss_pred             cCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhc--------
Confidence            4554  3789999998887763221    0111111134666667777778899999998888888777544        


Q ss_pred             CCCCCCceEEEEcC----CccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE-EEccccCCC
Q 013008          185 DSKEPATEFVSFTN----SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV-FVEPIQGEG  259 (451)
Q Consensus       185 ~~~~~~~~ii~~~~----~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav-i~ep~~~~~  259 (451)
                          .+..+|+..+    +||-.....+.+.|......+.         .......+++.+|..+....+ +..+.++..
T Consensus       105 ----~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~---------tn~t~~~d~~~AIne~ta~llkV~s~~~~f~  171 (395)
T COG1921         105 ----EGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGT---------TNRTHLKDYELAINENTALLLKVHSSNYGFT  171 (395)
T ss_pred             ----cCCeEEEEccccccCCCCChhHHHHHcCCEEEEecc---------cCcCCHHHHHHHhccCCeeEEEEeecccccc
Confidence                2334444321    4555555555544432211100         011257888889975433332 334444555


Q ss_pred             CccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhcc
Q 013008          260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAIN  337 (451)
Q Consensus       260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~  337 (451)
                      +.+ +    ++++.++|++||+++|+|..-...-+ -.....+.....+|+++||  |.|+ |...|.+++++++++.++
T Consensus       172 ~~l-~----~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdKllg-GPqaGii~GkKelI~~lq  244 (395)
T COG1921         172 GML-S----EEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDKLLG-GPQAGIIVGKKELIEKLQ  244 (395)
T ss_pred             ccc-c----HHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecchhcC-CCccceEechHHHHHHHH
Confidence            553 4    88999999999999999977522211 1111233345579999998  7776 457799999999999987


Q ss_pred             CCCccCCCCCcHHHHHHHHHHHHHhcCh
Q 013008          338 YGDHGSTFAGSPLVCNAAIAVLDKISNP  365 (451)
Q Consensus       338 ~~~~~~t~~~~~~~~aaa~aal~~~~~~  365 (451)
                      .......+-......++..++|+.....
T Consensus       245 ~~~l~Ralrv~K~tla~l~~aLe~y~~~  272 (395)
T COG1921         245 SHPLKRALRVDKETLAALEAALELYLQP  272 (395)
T ss_pred             hhhhhhhhhcCcHhHHHHHHHHHHHcCc
Confidence            5544455556788888889999877654

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.65  E-value=1e-05  Score=89.00  Aligned_cols=264  Identities=15%  Similarity=0.096  Sum_probs=145.4

Q ss_pred             HHHHHHHHhhccCC--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~~~--e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..++...++++.|.  .++.+..+++.+.+.++...+ +++       ..+++|++.+..|. .+...+....       
T Consensus       123 l~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~-~~~-------~~~~~vlv~~~~hP-~~~~v~~t~a-------  186 (954)
T PRK05367        123 LLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKR-VSK-------SKSNRFFVDDDVHP-QTLDVLRTRA-------  186 (954)
T ss_pred             HHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhh-hcc-------CCCCEEEEcCccCH-HHHHHHHHHH-------
Confidence            34566778888884  477889999999886665443 321       01378888877764 3333221100       


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                       .+..-.++.++.++  +    ++.+++++++ -.+.+..|.+.+    +++|.++|+++|+++++|-.+..++.. .  
T Consensus       187 -~~~G~ev~~~~~~~--d----~~~~~~~~vl-vq~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l-~--  251 (954)
T PRK05367        187 -EPLGIEVVVGDAAK--A----LDHDDVFGVL-LQYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLL-T--  251 (954)
T ss_pred             -HhCCCEEEEecCcc--C----CCcccEEEEE-EecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCC-C--
Confidence             01112334444332  1    1233565554 444566777776    999999999999999999755322111 1  


Q ss_pred             cccccCCCcceeeec--cc---cc-CCcccccccccHHHHhhccCCCc-------c---CC-----------C---CCcH
Q 013008          300 AHEHYGIFPDIMTLA--KP---LA-GGLPIGAALVTEKVASAINYGDH-------G---ST-----------F---AGSP  349 (451)
Q Consensus       300 ~~~~~~~~pdi~t~s--K~---lg-~G~~iG~v~~~~~i~~~~~~~~~-------~---~t-----------~---~~~~  349 (451)
                      ....  +..|+++.+  |.   +| ||--.|++.+++++.+.+.+...       +   ..           +   ..|.
T Consensus       252 ~pge--~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNi  329 (954)
T PRK05367        252 PPGE--MGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNI  329 (954)
T ss_pred             Chhh--cCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccccccccccccc
Confidence            1122  346776543  43   22 34447888889888776642200       0   00           0   0111


Q ss_pred             ---HHHHHHHHH--HHHhcChHHHH---H-------HHhCCC--Ccceecccce--eEEEEecCChHHHHHHHHHCCcee
Q 013008          350 ---LVCNAAIAV--LDKISNPAFLA---S-------KLARNP--HVKDVRGLGL--IIGIEFDVSATPVVDACRDSGLLV  410 (451)
Q Consensus       350 ---~~~aaa~aa--l~~~~~~~~~~---~-------~~~~~~--~~~~v~g~G~--~~~~~~~~~~~~~~~~l~~~Gv~~  410 (451)
                         .+..++.++  +..+...++.+   +       +.+++.  .+. +.....  .+.+.++.+..++.++|+++||.+
T Consensus       330 ct~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~-~~~~~~f~~~~~~~~~~~~~i~~~l~~~gi~~  408 (954)
T PRK05367        330 CTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLE-VVHDSFFDTLTVEVGGDAAAVLARALAAGINL  408 (954)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcc-cCCCCCCCeEEEeCCCCHHHHHHHHHHCCcee
Confidence               111112222  12222222211   1       122211  111 111111  222333346788999999999998


Q ss_pred             eecCCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          411 LTAGKGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       411 ~~~~~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      ..... +.+|+++....|++||+.+++.|.
T Consensus       409 ~~~~~-~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        409 RRVDD-DHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             ccccC-CEEEEEecccCCHHHHHHHHHHHc
Confidence            65433 679999999999999999999996

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.62  E-value=5.5e-06  Score=87.45  Aligned_cols=160  Identities=16%  Similarity=0.098  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhhccCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhh-hhccC-CCCc
Q 013008          140 IPQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA-LALTS-KEHY  216 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~~e~-v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~-~~~~~-~~~~  216 (451)
                      ....+-.+..++.++.++ .+++||.|.+|..++.++..           ++|+|| ++...|=+...+ +.++| .+.|
T Consensus       174 G~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~-----------~Gd~VL-vdRN~HKSv~hgaLiLsGa~PVY  241 (720)
T PRK13578        174 GAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLT-----------PGDLVL-FDRNNHKSNHHGALIQAGATPVY  241 (720)
T ss_pred             hHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcC-----------CCCEEE-eecccHHHHHHHHHHHcCCeEEE
Confidence            335566666777788765 45577778888888887662           466555 556668777764 66654 3444


Q ss_pred             CCCCcCCCCCee-EeeCC--CHHHHHHhcCCC----------CeEEEEEccccCCCCccccCHHHHHHHHHH-HHHhCCE
Q 013008          217 RSPFEPVMPGVN-FVEYG--NIEATRKLIQPG----------KTAAVFVEPIQGEGGIYSATKEFLQFLRDA-CDDAGAL  282 (451)
Q Consensus       217 ~~~~~~~~~~~~-~~~~~--d~~~le~~l~~~----------~~aavi~ep~~~~~G~~~~~~~~l~~l~~l-~~~~g~l  282 (451)
                      ..+-.. .-++. -++..  +.+.++++|+..          -.++||+.|.+  .|.+..    +++|.++ |+.++ +
T Consensus       242 l~P~~n-~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-~  313 (720)
T PRK13578        242 LETARN-PFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-Y  313 (720)
T ss_pred             eecccc-ccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-c
Confidence            322110 01110 11111  356688888632          13456666643  355555    8889888 68888 9


Q ss_pred             EEEeccccCCCccccc---ccccccCCCcc----eeeec--ccccC
Q 013008          283 LVFDEVQCGLGRTGYL---WAHEHYGIFPD----IMTLA--KPLAG  319 (451)
Q Consensus       283 lI~DEv~tg~gr~G~~---~~~~~~~~~pd----i~t~s--K~lg~  319 (451)
                      |++||+|.+.-.....   +........+|    ++|-|  |.+++
T Consensus       314 llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a  359 (720)
T PRK13578        314 ILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG  359 (720)
T ss_pred             EEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchh
Confidence            9999998653222221   11112334566    77666  76653

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=98.62  E-value=2.5e-06  Score=84.42  Aligned_cols=286  Identities=14%  Similarity=0.079  Sum_probs=153.7

Q ss_pred             CHH-HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC--C--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          116 DAD-WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA--D--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       116 ~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      +|. +++++.+++-...|.+ .-......+..+.|.+.++.  +  -++++.||+.|+++++..+..          +++
T Consensus        15 ~~~~~~~~~~~~~~~~~HRs-~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~----------~~g   83 (374)
T TIGR01365        15 RPGWSIEELKNAPLGRSHRS-KLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG----------CRG   83 (374)
T ss_pred             CchhhHHHHhhhhcccCcCC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC----------CCC
Confidence            566 5555555433222211 11122356667777777762  2  367799999999999996551          146


Q ss_pred             ceEEEEcCCccCChhh-hh-hccCCCCcCCCCcCCCCCeeEeeCC---CHHHHHHhcCCCCeEEEEEccccCCCCccccC
Q 013008          191 TEFVSFTNSFHGRTMG-AL-ALTSKEHYRSPFEPVMPGVNFVEYG---NIEATRKLIQPGKTAAVFVEPIQGEGGIYSAT  265 (451)
Q Consensus       191 ~~ii~~~~~yhg~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~  265 (451)
                      +++++. + +.|.... -+ ...+...         ..+...+++   |+++++.   ...+.++.+|+   .+|+..+ 
T Consensus        84 ~~vLv~-g-~FG~r~~~eia~~~g~~~---------v~~l~~~~g~~~~~~~ve~---~~~v~~vhnET---STGv~np-  145 (374)
T TIGR01365        84 VDVLAW-E-SFGKGWVTDVTKQLKLPD---------VRVLEAEYGKLPDLKKVDF---KNDVVFTWNGT---TSGVRVP-  145 (374)
T ss_pred             CeEEEE-C-HHHHHHHHHHHHhcCCCC---------cEEEcCCCCCCCCHHHcCC---CCCEEEecCCC---chheecc-
Confidence            778874 3 3343311 11 1111100         011112222   6677652   22343333443   3455554 


Q ss_pred             HHHHHHHHHHHHH-hCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCC---
Q 013008          266 KEFLQFLRDACDD-AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG---  339 (451)
Q Consensus       266 ~~~l~~l~~l~~~-~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~---  339 (451)
                         +++   ++++ +++++|+|-|-+ +|  |..+-.+  +  .|++..|  |+|++--.+++++.+++..+.....   
T Consensus       146 ---v~~---i~~~~~~~lliVDavSs-~g--~~~l~~d--~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y  212 (374)
T TIGR01365       146 ---NGD---FIPADREGLTICDATSA-AF--AQDLDYH--K--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPA  212 (374)
T ss_pred             ---ccc---cccccCCCcEEEEccch-hc--CCCCChh--H--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCC
Confidence               443   3333 589999998864 53  3333233  2  6766554  9998533456777787766543310   


Q ss_pred             -------------------CccCCCC-CcHHHHHHHHHHHHHhcCh-HHHHH-------------HHhCCC---Ccc---
Q 013008          340 -------------------DHGSTFA-GSPLVCNAAIAVLDKISNP-AFLAS-------------KLARNP---HVK---  379 (451)
Q Consensus       340 -------------------~~~~t~~-~~~~~~aaa~aal~~~~~~-~~~~~-------------~~~~~~---~~~---  379 (451)
                                         ....|.. .+.....++..+|+.++++ ++..+             ..+.++   ...   
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~  292 (374)
T TIGR01365       213 WPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETP  292 (374)
T ss_pred             CCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCh
Confidence                               0122332 2344455566667655443 22222             122333   111   


Q ss_pred             eecccceeEEEEe-cC-------C-----hHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          380 DVRGLGLIIGIEF-DV-------S-----ATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       380 ~v~g~G~~~~~~~-~~-------~-----~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ..+.. ....+.+ +.       +     ..+|.+.|.++|+.+.++..   +..+||.---.++.+|++.+++.|+=+.
T Consensus       293 ~~rS~-tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~  371 (374)
T TIGR01365       293 EIRSN-TSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAF  371 (374)
T ss_pred             hhcCC-CeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHH
Confidence            11221 2233333 11       2     57788999999998887643   5789998777899999999999998665


Q ss_pred             H
Q 013008          444 P  444 (451)
Q Consensus       444 ~  444 (451)
                      .
T Consensus       372 ~  372 (374)
T TIGR01365       372 A  372 (374)
T ss_pred             h
Confidence            4

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.58  E-value=4.8e-07  Score=89.87  Aligned_cols=172  Identities=24%  Similarity=0.212  Sum_probs=100.5

Q ss_pred             HHHHHHHHhhccCCC---------eEEecCCHHHHHHHHHHHHHHHhhhcC---CCCCCCCceEEEEcCCccCChhhhhh
Q 013008          142 QIELAKRLVACSFAD---------RVFFSNTGTEANEAAIKFARKFQRHSN---PDSKEPATEFVSFTNSFHGRTMGALA  209 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e---------~v~~~~sG~eA~~~al~~a~~~~~~~~---~~~~~~~~~ii~~~~~yhg~~~~~~~  209 (451)
                      +.++.+++++.++.+         .-++|+||++||..|+.++|.......   +.. +..+.+++.+..-|-+..-+..
T Consensus        81 E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~-~~~~~~i~~s~~aH~S~~Kaa~  159 (373)
T PF00282_consen   81 EREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVE-EIPKPVIYVSEQAHYSIEKAAR  159 (373)
T ss_dssp             HHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTT-HCSSEEEEEETTS-THHHHHHH
T ss_pred             hHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccc-cccccccccccccccHHHHhcc
Confidence            666777788877733         578999999999999999986542110   000 0123466666656766555544


Q ss_pred             ccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcC----CCCeE-EEEEccccCCCCccccCHHHHHHHHHHHHHh
Q 013008          210 LTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQ----PGKTA-AVFVEPIQGEGGIYSATKEFLQFLRDACDDA  279 (451)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~----~~~~a-avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  279 (451)
                      ..|-.            ++.+|.+     |+++|+++|+    .+.+. +|+..--....|.+-+    +++|+++|++|
T Consensus       160 ~lGlg------------~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~  223 (373)
T PF00282_consen  160 ILGLG------------VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADICEKY  223 (373)
T ss_dssp             HTTSE------------EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHC
T ss_pred             eeeeE------------EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhhcccc
Confidence            43322            2222222     7889988886    22333 3333333334566555    99999999999


Q ss_pred             CCEEEEeccccCCCcccccccccccCC-Ccceeeec--ccccCCcccccccccH
Q 013008          280 GALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTE  330 (451)
Q Consensus       280 g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~  330 (451)
                      +++|++|-++.|....-+..-.-..++ ..|-+++.  |.++..++.|+++.++
T Consensus       224 ~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~  277 (373)
T PF00282_consen  224 NIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRD  277 (373)
T ss_dssp             T-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESS
T ss_pred             ceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeec
Confidence            999999999877322111111112233 35666554  8887678889888764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.57  E-value=7e-06  Score=82.89  Aligned_cols=287  Identities=18%  Similarity=0.224  Sum_probs=174.2

Q ss_pred             HHHHHHHHHhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          141 PQIELAKRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ...+|++.|++..|.|.+.| -|||.++-.+.++..|.|...++..    -..|-...-+-||....+..+.|-...-..
T Consensus       583 lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~----hRnvClIPvSAHGTNPASA~MagmkvvpV~  658 (1001)
T KOG2040|consen  583 LFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEG----HRNVCLIPVSAHGTNPASAAMAGMKVVPVG  658 (1001)
T ss_pred             HHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCC----cceeEEEeecccCCChhhHHhcCCEEEEee
Confidence            35689999999999888776 5789999999999999998766543    233444445779987666555442211000


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecc----ccCCC
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV----QCGLG  293 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv----~tg~g  293 (451)
                      .  ...+ .    -|+.+|+...+  .++.+++++.=. ++-|...+   -++++.++.++||.-++.|-+    |-|+.
T Consensus       659 ~--~~~G-~----id~~dLk~kaekh~~~Laa~MvTYP-ST~GvfE~---~i~d~cd~iHehGGQVYlDGANMNAqVGlc  727 (1001)
T KOG2040|consen  659 C--DANG-N----IDMVDLKAKAEKHKDNLAALMVTYP-STHGVFEE---GIDDICDIIHEHGGQVYLDGANMNAQVGLC  727 (1001)
T ss_pred             c--cCCC-C----ccHHHHHHHHHHhhhhhheeEEecc-cccccccc---cHHHHHHHHHhcCCEEEecCCCccceeccc
Confidence            0  0000 0    17888887776  456777777533 34454333   288899999999999999986    55666


Q ss_pred             ccccccc-ccccCCCcceeeecccccC-CcccccccccHHHHhhccCC-----------CccCCCCCcHH----HHHHHH
Q 013008          294 RTGYLWA-HEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASAINYG-----------DHGSTFAGSPL----VCNAAI  356 (451)
Q Consensus       294 r~G~~~~-~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~~~~-----------~~~~t~~~~~~----~~aaa~  356 (451)
                      +.|..++ ..|+++.-   ||.-..|| |-.+|-+.+++.+...+...           ...++.+..|.    ......
T Consensus       728 ~pGd~GaDV~HLNLHK---TFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISw  804 (1001)
T KOG2040|consen  728 RPGDIGADVCHLNLHK---TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISW  804 (1001)
T ss_pred             CCccccccceeecccc---eeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHH
Confidence            6665322 22333221   44444555 46677777888877765321           01122222232    233334


Q ss_pred             HHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEe--c---------CChHHHHHHHHHCCceee
Q 013008          357 AVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEF--D---------VSATPVVDACRDSGLLVL  411 (451)
Q Consensus       357 aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~--~---------~~~~~~~~~l~~~Gv~~~  411 (451)
                      +-++.+-..++.+.              +...++.+  .++.-..++-+|  +         ..+.+++++|.+.|....
T Consensus       805 aYikmMG~~GL~~as~~AiLNaNYMakRLe~hYkil--~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaP  882 (1001)
T KOG2040|consen  805 AYIKMMGSGGLKDASKIAILNANYMAKRLESHYKIL--FRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAP  882 (1001)
T ss_pred             HHHHHhcccccchhhHHHhhhhHHHHHHHhhcccee--EecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCC
Confidence            44555443333222              33344433  233322444333  1         356789999999998654


Q ss_pred             ecC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          412 TAG--KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       412 ~~~--~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .-.  -.+.+.|-|.-.-+++|+|++++++-..-++++
T Consensus       883 TmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI~  920 (1001)
T KOG2040|consen  883 TMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEIA  920 (1001)
T ss_pred             ccccccCCceEeccCccccHHHHHHHHHHHHHHHHHHH
Confidence            221  136789998888899999999999877766654

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.57  E-value=7e-08  Score=92.74  Aligned_cols=229  Identities=16%  Similarity=0.130  Sum_probs=55.8

Q ss_pred             ccCCCC--CHHHHHHHHHHHhhcccc-cCC--C-CCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 013008          110 NALGHG--DADWIKAVVDQANVLTHV-SNM--Y-YSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSN  183 (451)
Q Consensus       110 ~~lG~~--~p~v~~a~~~~~~~~~~~-~~~--~-~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~  183 (451)
                      .+||-+  +|++.+++.+.+..+..- +..  + --.-+..+++.+++..+.|..+++|....|+..++....       
T Consensus        11 TnLGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la-------   83 (367)
T PF03841_consen   11 TNLGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELTGAEAALVVNNNAAAVLLALNTLA-------   83 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence            356653  477888887766543221 000  0 001134566777888899999999999999888887554       


Q ss_pred             CCCCCCCceEEEEcCCc---cCC--hhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCC
Q 013008          184 PDSKEPATEFVSFTNSF---HGR--TMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGE  258 (451)
Q Consensus       184 ~~~~~~~~~ii~~~~~y---hg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~  258 (451)
                           .+..||+..+--   .|.  ....+..+|.....         +-......+++.+++|.+++.+.+.+-+.+..
T Consensus        84 -----~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvE---------VGttN~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~  149 (367)
T PF03841_consen   84 -----KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVE---------VGTTNRTHLSDYEKAITENTAALLKVHTSNFR  149 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----cccccccccccccccccccccccccccccccccc---------cccccccccccccccccccccccccccccccc
Confidence                 244555543311   111  11111112211100         00000114677888887644444456644332


Q ss_pred             -CC--ccccCHHHHHHHHHHHHHhCCEEEEeccc------cCCCcccccccccccCCCcceeeec--ccccCCccccccc
Q 013008          259 -GG--IYSATKEFLQFLRDACDDAGALLVFDEVQ------CGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAAL  327 (451)
Q Consensus       259 -~G--~~~~~~~~l~~l~~l~~~~g~llI~DEv~------tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~  327 (451)
                       .|  ..++    ++++.+++++|++++|.|---      +.+|..+..-..+.....+|++|||  |.||| -..|.++
T Consensus       150 i~GFt~~~~----~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGG-PQaGiI~  224 (367)
T PF03841_consen  150 IQGFTGEVS----LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGG-PQAGIIV  224 (367)
T ss_dssp             ---------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS--S-EEEE
T ss_pred             ccccccccc----HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCC-CCeEEEE
Confidence             22  1233    999999999999999999653      1122223333334445568999998  77765 4568999


Q ss_pred             ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC
Q 013008          328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN  364 (451)
Q Consensus       328 ~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~  364 (451)
                      +++++++.++.......+-..-+..++..++|+...+
T Consensus       225 Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~  261 (367)
T PF03841_consen  225 GKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLD  261 (367)
T ss_dssp             EEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH---
T ss_pred             eCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHH
Confidence            9999999987544444556678888899999987543

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=98.51  E-value=9e-06  Score=77.64  Aligned_cols=203  Identities=17%  Similarity=0.137  Sum_probs=116.1

Q ss_pred             CCHHHHHHHHHH-Hhh--cccccCCCCC-HHHHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008          115 GDADWIKAVVDQ-ANV--LTHVSNMYYS-IPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK  187 (451)
Q Consensus       115 ~~p~v~~a~~~~-~~~--~~~~~~~~~~-~~~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~  187 (451)
                      |+-+|.+|+++. +..  +...+++++. ..++.|++-.++.++.|..++   ..|||.|+..++...+.          
T Consensus        25 Nq~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~Lr----------   94 (403)
T PF06838_consen   25 NQLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLR----------   94 (403)
T ss_dssp             HHHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCC----------
Confidence            456677777763 322  1112223333 448999999999999887775   46899999999997663          


Q ss_pred             CCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008          188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIY  262 (451)
Q Consensus       188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~  262 (451)
                       |+|+++...+.=.-.....+.+.+...  ..+....-....++.     -|++.+++.++ .++++|++--.-|-.---
T Consensus        95 -pGD~ll~~tG~PYDTL~~VIG~~g~~~--GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~-~~tk~v~IQRSrGYs~R~  170 (403)
T PF06838_consen   95 -PGDELLSITGKPYDTLEEVIGIRGNGP--GSLKEFGIKYREVPLTEDGTIDWEAIKKALK-PNTKMVLIQRSRGYSWRP  170 (403)
T ss_dssp             -TT-EEEESSSS--CCHHHHHTSSSSSS--SSTGGGT-EEEE--B-TTSSB-HHHHHHHHH-TTEEEEEEE-S-TTSSS-
T ss_pred             -CCCeEEEcCCCchhhHHHHhCCCCCCC--CChHHhCceeEEEeecCCCCcCHHHHHHhhc-cCceEEEEecCCCCCCCC
Confidence             799998876532222222222332210  000000111112221     17999999997 478888886655544334


Q ss_pred             ccCHHHHHHHHHHHHHh--CCEEEEeccccCCCcccccccccccCCCccee--eecccccCC-c-ccccccccHHHHhhc
Q 013008          263 SATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGG-L-PIGAALVTEKVASAI  336 (451)
Q Consensus       263 ~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G-~-~iG~v~~~~~i~~~~  336 (451)
                      ..+-+.++++.++.|+.  ++++.+|..|..|--.     .+-..+..|++  +|=|-.||| . ..|||++++++++..
T Consensus       171 sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~-----~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~  245 (403)
T PF06838_consen  171 SLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET-----QEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERA  245 (403)
T ss_dssp             ---HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS-----S-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc-----cCccccchhheeccceeCCCCCccCcCCEEechHHHHHHH
Confidence            45667788888888765  7899999999777322     22234557776  677999998 3 447889999999875

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.48  E-value=9.3e-05  Score=70.24  Aligned_cols=330  Identities=17%  Similarity=0.202  Sum_probs=177.0

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a  175 (451)
                      .+.-+||+.+-.++...  + .....||..-=+.      +..+.....|++...+.+|.+.++.+.-|-.|-...+..+
T Consensus        44 Sedv~IDLLTDSGTgam--s-~~qwaamm~GDEA------Yagsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~  114 (471)
T COG3033          44 SEDVFIDLLTDSGTGAM--T-DKQWAAMMRGDEA------YAGSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPIL  114 (471)
T ss_pred             ccceEEEeeccCCcccc--c-HHHHHHHhccchh------hcccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHH
Confidence            34678999876663322  2 2223333321111      1223346788999999999999999999988877777776


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCe-eEeeCC---CHHHHHHhcC---CCCeE
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV-NFVEYG---NIEATRKLIQ---PGKTA  248 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---d~~~le~~l~---~~~~a  248 (451)
                      ++...      ..++.+.+++++.|.-.+.+-....|... +.-+.+...+. .-.|+-   |++.|+++|+   .+++.
T Consensus       115 ik~~~------~~pg~~~~~~sN~~FdTTr~h~~~ng~~~-~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp  187 (471)
T COG3033         115 IKKGE------QEPGSKMVAFSNYHFDTTRGHIQINGATP-RNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVP  187 (471)
T ss_pred             hhhcc------ccCCccccccccceecchhHHHHhcCCcc-ccccccccccccccCCCCCccCHHHHHHHHHHhCcccCc
Confidence            65211      12577888888877666555444332211 11111100000 112221   8999999997   44566


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC----CCcc---cc-ccccc-----ccCCCcceeeec-
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----LGRT---GY-LWAHE-----HYGIFPDIMTLA-  314 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----~gr~---G~-~~~~~-----~~~~~pdi~t~s-  314 (451)
                      .|++.-.++..|..+-+-+-++++++||++||+.++.|-+-.-    |-..   |. .|...     .+. ..|-.++| 
T Consensus       188 ~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~s-YaD~~~mS~  266 (471)
T COG3033         188 YIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYS-YADGCTMSA  266 (471)
T ss_pred             EEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHh-hhhhheeec
Confidence            6655544555555788999999999999999999999976321    1000   00 01110     000 23444555 


Q ss_pred             ccccCC-cccc-cccccHH----HHhhccCC----CccCCCCC-cHHHHHHHHHHHHHhcChHHHHH-------HH----
Q 013008          315 KPLAGG-LPIG-AALVTEK----VASAINYG----DHGSTFAG-SPLVCNAAIAVLDKISNPAFLAS-------KL----  372 (451)
Q Consensus       315 K~lg~G-~~iG-~v~~~~~----i~~~~~~~----~~~~t~~~-~~~~~aaa~aal~~~~~~~~~~~-------~~----  372 (451)
                      |-=  | .++| +++.+++    +...++..    .-..||++ ..-.+.|....|...-+.+|+++       +.    
T Consensus       267 KKD--~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~  344 (471)
T COG3033         267 KKD--GLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLE  344 (471)
T ss_pred             ccc--ceeccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            311  2 3444 4444544    44444321    11234443 11122222233443344566655       22    


Q ss_pred             -hCCCCcceecccceeEEEEe----c------CChHHHHHHHH-HCCceeeecC-----------C-----CCEEEEeCC
Q 013008          373 -ARNPHVKDVRGLGLIIGIEF----D------VSATPVVDACR-DSGLLVLTAG-----------K-----GNVVRLVPP  424 (451)
Q Consensus       373 -~~~~~~~~v~g~G~~~~~~~----~------~~~~~~~~~l~-~~Gv~~~~~~-----------~-----~~~iri~~~  424 (451)
                       ...|.+..  ..|.-..++.    +      -.++.|+-+|. +.||-..-.|           .     -+.+|+.+|
T Consensus       345 ~~GVpi~~p--aGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltip  422 (471)
T COG3033         345 EAGVPIVQP--AGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIP  422 (471)
T ss_pred             hcCCeeEec--CCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEecc
Confidence             22333322  2233333332    1      24566666665 4465443211           0     146899876


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHHH
Q 013008          425 L-IISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       425 ~-~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      - +-|.+++|..++.+.+..+.-
T Consensus       423 RrtYt~~HmD~V~~a~~~l~e~~  445 (471)
T COG3033         423 RRTYTQTHMDFVIEAFKALKENA  445 (471)
T ss_pred             ccccchhHHHHHHHHHHHHHhcc
Confidence            4 568999999999998877653

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.40  E-value=0.0001  Score=72.48  Aligned_cols=295  Identities=13%  Similarity=0.062  Sum_probs=160.6

Q ss_pred             CCHHHHHHHHHHHhhccc-c------cCCC--CCHHHHHHHHHHhhccCC-C--eEEecCC-HHHHHHHHHHHHHHHhhh
Q 013008          115 GDADWIKAVVDQANVLTH-V------SNMY--YSIPQIELAKRLVACSFA-D--RVFFSNT-GTEANEAAIKFARKFQRH  181 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~-~------~~~~--~~~~~~~l~~~l~~~~~~-e--~v~~~~s-G~eA~~~al~~a~~~~~~  181 (451)
                      -+++|.+++.+.+-++.. +      +.+.  ......+..+.|.+.++. +  +|+|.+| |+.+.++++.-+..    
T Consensus        15 lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~----   90 (364)
T PRK12462         15 LPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSR----   90 (364)
T ss_pred             CCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCC----
Confidence            478888888877655221 1      1111  122255667777777762 2  5666555 89999988886541    


Q ss_pred             cCCCCCCCCceEE-EEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCC
Q 013008          182 SNPDSKEPATEFV-SFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG  259 (451)
Q Consensus       182 ~~~~~~~~~~~ii-~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~  259 (451)
                             ++++++ +...++.|....-.... +.....  ......+...+  .+++.+  .+ +.+.+.|.+..+....
T Consensus        91 -------~g~~~~~~~~tG~fg~r~~~ea~~~g~v~~~--~~~~~~~~~~~--p~~~~~--~~-~~d~~~v~~t~NETst  156 (364)
T PRK12462         91 -------PGAAAPEYVTTGYWSRKAIGEASRVAAMRVV--WDGAASGYRTL--PSLAEL--DW-DARAPFRHYVSNETVE  156 (364)
T ss_pred             -------CCCcEEEEEeCCHHHHHHHHHHHhcCCceEe--cCcCCCCCCcC--CCHHHh--cc-CCCCcEEEEccCCCCc
Confidence                   466565 55555544432221111 111000  00000011111  134443  11 2345667666666666


Q ss_pred             CccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhcc
Q 013008          260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAIN  337 (451)
Q Consensus       260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~  337 (451)
                      |+..+         ++.+.+++++|+|=+-+ ++  +...-.+.+    |++..|  |+||. -.++.++.+++.++...
T Consensus       157 Gv~~~---------~~~~~~~~llvvD~sS~-~~--s~pid~~~~----dvi~agsQKnlgP-~Gltvvivs~~al~~~~  219 (364)
T PRK12462        157 GLQFP---------DAAGLPDSPLIADMSSD-FM--SRPFDVEAY----GMVYAHAQKNLGP-AGVTVAIIRRALLERVP  219 (364)
T ss_pred             eEecC---------cccccCCCeEEEEcCch-hh--CCCCChHHc----cEEEeeccccCCC-CceEEEEECHHHHhhcc
Confidence            76543         33344799999997754 32  333334433    666554  99973 24567778888876653


Q ss_pred             CC-----------CccCCCCC-cHHHHHHHHHHHHHhcCh--HHHHH-------------HHhCCC----Ccceecccce
Q 013008          338 YG-----------DHGSTFAG-SPLVCNAAIAVLDKISNP--AFLAS-------------KLARNP----HVKDVRGLGL  386 (451)
Q Consensus       338 ~~-----------~~~~t~~~-~~~~~aaa~aal~~~~~~--~~~~~-------------~~~~~~----~~~~v~g~G~  386 (451)
                      ..           ...++++. +.....+...+|+.+.++  ++...             ..+..+    .......+..
T Consensus       220 ~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~  299 (364)
T PRK12462        220 DTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARST  299 (364)
T ss_pred             ccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCc
Confidence            21           12345543 455667777888887555  32211             122222    1111111222


Q ss_pred             e-EEEEec--CChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          387 I-IGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       387 ~-~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      | +.|.+.  ....+|.+.+.++|+.-..++. -+.+|.++=-+++.|+++.+++-+++.-+
T Consensus       300 mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~  361 (364)
T PRK12462        300 MNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAI  361 (364)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            2 222332  2356788899999998766643 13389988889999999999988887654

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.38  E-value=6.3e-07  Score=88.96  Aligned_cols=160  Identities=21%  Similarity=0.262  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHHhhccCCCeEE-ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCc
Q 013008          139 SIPQIELAKRLVACSFADRVF-FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHY  216 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~~e~v~-~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~  216 (451)
                      .....+-.+..++.++.++.+ .+||.|.+|.+++.++..           ++|+||+.. .-|-+...++.+++. +.|
T Consensus        65 ~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~-----------~gd~VLv~R-N~HkSv~~alil~ga~Pvy  132 (417)
T PF01276_consen   65 EGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCR-----------PGDKVLVDR-NCHKSVYNALILSGAIPVY  132 (417)
T ss_dssp             BTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTT-----------TTCEEEEET-T--HHHHHHHHHHTEEEEE
T ss_pred             ccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcC-----------CCCEEEEcC-CcHHHHHHHHHHcCCeEEE
Confidence            334667777788889966554 567778888888887662           577766655 557887778777653 333


Q ss_pred             CCCCcCCCCCe-eEeeCC--CHHHHHHhcC--CCCeE---EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecc
Q 013008          217 RSPFEPVMPGV-NFVEYG--NIEATRKLIQ--PGKTA---AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV  288 (451)
Q Consensus       217 ~~~~~~~~~~~-~~~~~~--d~~~le~~l~--~~~~a---avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv  288 (451)
                      ..+-. ..-++ .-++..  +.+.++++|+  +...+   +||+.|.+  .|....    +++|.++|++++++|++||+
T Consensus       133 i~p~~-~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEA  205 (417)
T PF01276_consen  133 IPPED-NEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEA  205 (417)
T ss_dssp             EEEEE--TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-T
T ss_pred             ecCCc-cccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEcc
Confidence            22110 00111 111111  3488888887  33334   67777753  365666    99999999999999999999


Q ss_pred             ccC-CCcccccccccccCCCcc-------eeeec--ccccC
Q 013008          289 QCG-LGRTGYLWAHEHYGIFPD-------IMTLA--KPLAG  319 (451)
Q Consensus       289 ~tg-~gr~G~~~~~~~~~~~pd-------i~t~s--K~lg~  319 (451)
                      |.+ |+.. . +.........|       +++-|  |.+++
T Consensus       206 hGah~~F~-~-lp~~a~~~gad~~~~~~~~vvqS~HKtL~a  244 (417)
T PF01276_consen  206 HGAHFGFH-P-LPRSALALGADRPNDPGIIVVQSTHKTLPA  244 (417)
T ss_dssp             T-TTGGCS-G-GGTTCSSTTSS-CTSBEEEEEEEHHHHSSS
T ss_pred             ccccccCC-C-CccchhhccCccccccceeeeechhhcccc
Confidence            865 3322 2 22234445566       77777  77763

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.32  E-value=0.00013  Score=77.14  Aligned_cols=276  Identities=12%  Similarity=0.117  Sum_probs=146.2

Q ss_pred             HHHHHHHHHhhccCCCeEE-ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC-CCCcCC
Q 013008          141 PQIELAKRLVACSFADRVF-FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-KEHYRS  218 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e~v~-~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~~~  218 (451)
                      ...+-.+..++.++.++.+ .+||.|.+|..++.++..           ++|+|| ++...|=+...++.+++ .+.|..
T Consensus       196 ~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~-----------~Gd~VL-vdRN~HKSv~~aLilsga~PVYl~  263 (713)
T PRK15399        196 PHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAP-----------AGSTLL-IDRNCHKSLAHLLMMSDVVPIWLK  263 (713)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcC-----------CCCEEE-eecccHHHHHHHHHHcCCeeEEec
Confidence            3556666677778877655 466678888888887662           466555 56667888777777765 344432


Q ss_pred             CCcCCCCCee-EeeCC--CHHHHHHhcCC-CC----eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEE-EEeccc
Q 013008          219 PFEPVMPGVN-FVEYG--NIEATRKLIQP-GK----TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALL-VFDEVQ  289 (451)
Q Consensus       219 ~~~~~~~~~~-~~~~~--d~~~le~~l~~-~~----~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ll-I~DEv~  289 (451)
                      +-+. .-++. -++..  +.+.+++.|+. .+    .++||+.|.+  .|.+..    +++|.++|   |+.+ ++||+|
T Consensus       264 P~~n-~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEAh  333 (713)
T PRK15399        264 PTRN-ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSAW  333 (713)
T ss_pred             cccc-ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEeccc
Confidence            2110 00110 01111  35888888872 12    3677777743  455544    77788887   6776 599998


Q ss_pred             cCCCccccc----ccccccCCCccee---eec--ccccCCccc-cccccc-----HHHHhhccCCCccCCCCCcHHHHHH
Q 013008          290 CGLGRTGYL----WAHEHYGIFPDIM---TLA--KPLAGGLPI-GAALVT-----EKVASAINYGDHGSTFAGSPLVCNA  354 (451)
Q Consensus       290 tg~gr~G~~----~~~~~~~~~pdi~---t~s--K~lg~G~~i-G~v~~~-----~~i~~~~~~~~~~~t~~~~~~~~aa  354 (451)
                      .+.-...+.    .+.. .+-.+|.+   |-|  |.+++ +.- +++-.+     +.+-+.+.   ...|.+.+-+.+|.
T Consensus       334 gah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~a~~---m~~STSPsY~LmAS  408 (713)
T PRK15399        334 VPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNEAFM---MHTSTSPSYPIVAS  408 (713)
T ss_pred             hhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHHHHH---HHcCCCcHHHHHHH
Confidence            653222221    1111 11146766   444  77753 222 233222     22222221   12233444333444


Q ss_pred             HHHHHHHhcC---hHHHHH----------HHhCCCC------cceecc-----------------cc-------e-----
Q 013008          355 AIAVLDKISN---PAFLAS----------KLARNPH------VKDVRG-----------------LG-------L-----  386 (451)
Q Consensus       355 a~aal~~~~~---~~~~~~----------~~~~~~~------~~~v~g-----------------~G-------~-----  386 (451)
                      .-.+...++.   ..+.++          .+.+...      +.....                 .|       .     
T Consensus       409 LD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP  488 (713)
T PRK15399        409 VETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDP  488 (713)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCC
Confidence            4444444432   222222          1111111      000000                 00       0     


Q ss_pred             -eEEEEe------------cCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          387 -IIGIEF------------DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       387 -~~~~~~------------~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                       -+.+..            ...+..+.+.|.++||.+--.+. +.+-+.++...|+++++.+++.|.+.-+
T Consensus       489 ~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~-~~vL~l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        489 VKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGP-YNLLFLFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             ceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCC-CeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence             001111            12355788889899999887765 5666777889999999999999887643

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.32  E-value=0.00014  Score=76.99  Aligned_cols=278  Identities=14%  Similarity=0.139  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcC
Q 013008          140 IPQIELAKRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYR  217 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~  217 (451)
                      ....+..+..++.++.++.+| +||.|.+|..++.++..           ++|+|| ++...|=+...++.+++. +.|.
T Consensus       195 G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~-----------~Gd~VL-vdRN~HKSv~haLilsga~PVYl  262 (714)
T PRK15400        195 GPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAP-----------AGSTVL-IDRNCHKSLTHLMMMSDVTPIYF  262 (714)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcC-----------CCCEEE-eecccHHHHHHHHHHcCCeEEEe
Confidence            335566666777788776554 66668888888776652           455555 666778888778777753 4443


Q ss_pred             CCCcCCCCCee-EeeCC--CHHHHHHhcCCC-C----eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008          218 SPFEPVMPGVN-FVEYG--NIEATRKLIQPG-K----TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ  289 (451)
Q Consensus       218 ~~~~~~~~~~~-~~~~~--d~~~le~~l~~~-~----~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~  289 (451)
                      .+-+. .-++. -++..  +.+.+++.|+.. +    .++||+.|.+  .|.+..    ++.|.++|+.++  |++||+|
T Consensus       263 ~P~rn-~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAw  333 (714)
T PRK15400        263 RPTRN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAW  333 (714)
T ss_pred             ccccc-ccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccc
Confidence            22110 00110 11111  478999988721 1    2477777743  455554    788999998887  6899998


Q ss_pred             cCCCcccccc----cccccCCCc-c--eeeec--ccccCCccc-ccccc----c-HHHHhhccCCCccCCCCCcHHHHHH
Q 013008          290 CGLGRTGYLW----AHEHYGIFP-D--IMTLA--KPLAGGLPI-GAALV----T-EKVASAINYGDHGSTFAGSPLVCNA  354 (451)
Q Consensus       290 tg~gr~G~~~----~~~~~~~~p-d--i~t~s--K~lg~G~~i-G~v~~----~-~~i~~~~~~~~~~~t~~~~~~~~aa  354 (451)
                      .+.-.....+    +.. .+-.+ |  ++|-|  |.+++ +.- +++-.    + +.+.+.+.  . ..|.+.+-+.+|.
T Consensus       334 gah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~~--m-~~STSPsY~l~AS  408 (714)
T PRK15400        334 VPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYM--M-HTTTSPHYGIVAS  408 (714)
T ss_pred             hhhhccCcccCCcChhh-cCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHHH--H-HcCCCcHHHHHHH
Confidence            6532222211    111 12111 4  56655  77653 222 22212    2 22222222  1 2233444333444


Q ss_pred             HHHHHHHhcC---hHHHHH----------HHhCCCC------cceeccc-----------------ce--------e---
Q 013008          355 AIAVLDKISN---PAFLAS----------KLARNPH------VKDVRGL-----------------GL--------I---  387 (451)
Q Consensus       355 a~aal~~~~~---~~~~~~----------~~~~~~~------~~~v~g~-----------------G~--------~---  387 (451)
                      .-.+...++.   ..+.++          .+.+++.      +......                 |+        +   
T Consensus       409 LD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP  488 (714)
T PRK15400        409 TETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP  488 (714)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCC
Confidence            4444444432   222222          1112211      1111000                 00        0   


Q ss_pred             --EEEEe------------cCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          388 --IGIEF------------DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       388 --~~~~~------------~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                        +.+..            ...+..+.+.|.++||.+--.+. +.+-+.++...|+++++.+++.|.+.-+
T Consensus       489 ~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~-~~iLfl~s~g~t~~~~~~L~~aL~~f~~  558 (714)
T PRK15400        489 IKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGP-YNLLFLFSIGIDKTKALSLLRALTDFKR  558 (714)
T ss_pred             ceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCC-CeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence              01111            02355678888899999887765 5666777889999999999999887633

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.31  E-value=0.00027  Score=68.85  Aligned_cols=269  Identities=16%  Similarity=0.167  Sum_probs=143.8

Q ss_pred             HHHHHHhhccCCC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCc
Q 013008          144 ELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFE  221 (451)
Q Consensus       144 ~l~~~l~~~~~~e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~  221 (451)
                      ++-..++++.+++  +.-....+|.+-|+++.+-| .++       .+++++++.. .-|..+...+..-        -.
T Consensus       124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r-~~k-------~k~~~~~V~~-~vhpqt~~Vl~Tr--------a~  186 (450)
T COG0403         124 EFQTLVADLTGLDVANASMLDEATAAAEAMLMAKR-VTK-------KKRNKFLVPK-DVHPQTLDVLRTR--------AE  186 (450)
T ss_pred             HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHH-hhc-------CcCceEEecC-CCCHHHHHHHHhh--------cc
Confidence            4445566777743  45555656655555444333 332       1245666655 4456655544321        12


Q ss_pred             CCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEE--eccccCCCcccccc
Q 013008          222 PVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF--DEVQCGLGRTGYLW  299 (451)
Q Consensus       222 ~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~--DEv~tg~gr~G~~~  299 (451)
                      +..-.+...+++|++.|++. ...++.+++++-++.-|.....    +++|.+.++++|+++|+  |=+--++  .-+  
T Consensus       187 ~~g~~i~~~~~~d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~L--L~p--  257 (450)
T COG0403         187 GLGIEIEVVDADDLDDLESA-DDGDVFGVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGL--LKP--  257 (450)
T ss_pred             cCceEEEEeccchhhhhhhc-cccCeEEEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhc--cCC--
Confidence            33345566777899999998 6568899999877655433333    99999999999998874  3222221  111  


Q ss_pred             cccccCCCcceee-----eccccc-CCcccccccccHHHHhhccCC----------------------------CccCCC
Q 013008          300 AHEHYGIFPDIMT-----LAKPLA-GGLPIGAALVTEKVASAINYG----------------------------DHGSTF  345 (451)
Q Consensus       300 ~~~~~~~~pdi~t-----~sK~lg-~G~~iG~v~~~~~i~~~~~~~----------------------------~~~~t~  345 (451)
                       ...+  ..||++     ||=.++ ||--.|++.++++++..+...                            ...+..
T Consensus       258 -PGe~--GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNI  334 (450)
T COG0403         258 -PGEF--GADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNI  334 (450)
T ss_pred             -cccc--CCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhh
Confidence             1122  245553     555555 456667888888876554211                            011222


Q ss_pred             CCcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCC---CcceecccceeEEEEe--c-CChHHHHHHHHHCCc
Q 013008          346 AGSPLVCNAAIAVLDKISN-PAFLAS----------KLARNP---HVKDVRGLGLIIGIEF--D-VSATPVVDACRDSGL  408 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~---~~~~v~g~G~~~~~~~--~-~~~~~~~~~l~~~Gv  408 (451)
                      +.|..-+|.+.+..-.+.. .++.+-          +++++.   ....+...-+|-.+.+  + .....+.++....|+
T Consensus       335 CTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~~~~~~l~~~~~~~G~  414 (450)
T COG0403         335 CTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPEEVAEALLAAAIAGGI  414 (450)
T ss_pred             hHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecchhHHHHHHHHHHhcCC
Confidence            3232222211111111122 222211          222222   1111111223322333  2 234455666667788


Q ss_pred             eeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          409 LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       409 ~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      .+..... ..+-++..-.+|+++|+.+++.+...
T Consensus       415 ~L~~~~~-~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         415 NLRRVDA-DTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             ceeeecC-CceEEEeecccCHHHHHHHHHHHhhh
Confidence            8876554 46778888889999999999888764

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.18  E-value=0.00073  Score=73.67  Aligned_cols=264  Identities=12%  Similarity=0.082  Sum_probs=142.9

Q ss_pred             HHHHHHHHhhccCCC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..++...++++.|++  ++-+..+++.+-++++.+.+. ++       .++++|++.+..+ ..+...+....       
T Consensus       111 l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~-~~-------~~~~~vlv~~~~h-P~~~~v~~t~a-------  174 (939)
T TIGR00461       111 LLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNV-SK-------KKANKFFVAKDLH-PQTKSVLHTRA-------  174 (939)
T ss_pred             HHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHh-hc-------CCCCEEEECCCCC-cchHHHHHHHH-------
Confidence            446777788888866  557888888887755554332 21       0246777766554 55443322110       


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                       .+..-.++.+   |+++|++.+   +++++++.-. +..|.+..    +++|.++++++|+++|++--...++..-   
T Consensus       175 -~~~g~~v~~~---~~~~l~~~~---~~~~v~~q~P-n~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~ll~---  239 (939)
T TIGR00461       175 -KPFGIEVIVV---DCSDIKKAV---DVFGCLLQYP-ATDGSILD----YKQLIDALHSHKSLVSVAADLMALTLLT---  239 (939)
T ss_pred             -HhcCcEEEEE---cHHHHhhcC---CEEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechHHhCCcC---
Confidence             1111223333   566777665   4666665433 34455554    9999999999999999864433221111   


Q ss_pred             cccccCCCcceee-eccccc-----CCcccccccccHHHHhhccCCC----------------------c------cCCC
Q 013008          300 AHEHYGIFPDIMT-LAKPLA-----GGLPIGAALVTEKVASAINYGD----------------------H------GSTF  345 (451)
Q Consensus       300 ~~~~~~~~pdi~t-~sK~lg-----~G~~iG~v~~~~~i~~~~~~~~----------------------~------~~t~  345 (451)
                      ....+  ..||++ .+|.||     ||--.|++.+++++...+....                      |      .+..
T Consensus       240 ~Pge~--GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNI  317 (939)
T TIGR00461       240 PPGHY--GADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNI  317 (939)
T ss_pred             CHHHc--CCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcch
Confidence            11122  356652 335443     2444778888888776653210                      0      0111


Q ss_pred             CCcHHHHH-HHHHHHHHhcChHHHH---H-------HHhCC--CCcceecccceeEEE--Eec-CChHHHHHHHHHCCce
Q 013008          346 AGSPLVCN-AAIAVLDKISNPAFLA---S-------KLARN--PHVKDVRGLGLIIGI--EFD-VSATPVVDACRDSGLL  409 (451)
Q Consensus       346 ~~~~~~~a-aa~aal~~~~~~~~~~---~-------~~~~~--~~~~~v~g~G~~~~~--~~~-~~~~~~~~~l~~~Gv~  409 (451)
                      +.+...++ ++..-+..+-.+++.+   +       +.+.+  ..+..+.. -.|-.+  .+. .++.++.+++.++||.
T Consensus       318 Ct~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~-~fF~~~~v~~~~~~~~~i~~~~~~~gi~  396 (939)
T TIGR00461       318 CTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINK-TWFDTLTVKVGNGISSELLKAAEEFNIN  396 (939)
T ss_pred             hHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CccceEEEEeCCCCHHHHHHHHHHCCCe
Confidence            11111111 1111123333333322   1       11111  12221211 122122  232 3578899999999999


Q ss_pred             eeecCCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          410 VLTAGKGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       410 ~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      +..... +.+++++.-.+|++||+.+++.+.
T Consensus       397 l~~~~~-~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       397 LRAVDT-TTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             eeecCC-CEEEEEeecCCCHHHHHHHHHHhc
Confidence            876544 689999999999999999999994

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.09  E-value=0.00037  Score=69.51  Aligned_cols=164  Identities=21%  Similarity=0.245  Sum_probs=84.5

Q ss_pred             HHHHHHHHhhccCCCeE--EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACSFADRV--FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~v--~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..++...++++.+.|-+  -+..+++.+-++++.+.+ .++.       .+++|++.+. -|+.+...+....       
T Consensus       112 lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r-~~~~-------~~~~vlv~~~-~hP~~~~v~~t~a-------  175 (429)
T PF02347_consen  112 LFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVR-ATKR-------KRNKVLVPES-LHPQTRAVLRTYA-------  175 (429)
T ss_dssp             HHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHH-HHTT----------EEEEETT-S-CHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHH-hccc-------CCcEEEEcCC-cChhhHHHHHHhh-------
Confidence            55788889999998753  566666666665544444 3331       2456777665 4565544333211       


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                       .+..-.+..++.++-..    .+++++++|++...+.- |.+-.    +++|.++++++|+++|+ -+  ..--.+-.-
T Consensus       176 -~~~g~~iv~~~~~~~~~----~d~~~~a~v~vq~Pn~~-G~~ed----~~~i~~~~h~~gal~~~-~a--d~~aL~~l~  242 (429)
T PF02347_consen  176 -APLGIEIVEVPLDEDGT----TDDDDTAAVMVQNPNTF-GVFED----IKEIADIAHAAGALVIV-GA--DPNALGGLK  242 (429)
T ss_dssp             -CHCCEEEEEE-BBTTCS----B-STTEEEEEEESS-TT-SB--T----HHHHHHHHHHTT-EEEE-CG--GCCGCCTC-
T ss_pred             -hhCCeEEEEecccccCC----ccccCeEEEEeecCCCC-ceEee----HHHHHHHHHHcCCEEEE-ec--CHHHHhCcC
Confidence             11122334444322110    01568999998876544 44433    99999999999999987 33  211111111


Q ss_pred             cccccCCCcceee-eccccc-----CCcccccccccHHHHhhc
Q 013008          300 AHEHYGIFPDIMT-LAKPLA-----GGLPIGAALVTEKVASAI  336 (451)
Q Consensus       300 ~~~~~~~~pdi~t-~sK~lg-----~G~~iG~v~~~~~i~~~~  336 (451)
                      ....+|  .||++ .+|.||     ||--.|++.++++++..+
T Consensus       243 ~Pge~G--ADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~l  283 (429)
T PF02347_consen  243 SPGEYG--ADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQL  283 (429)
T ss_dssp             -GGGGT---SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS
T ss_pred             ChhhcC--ccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhC
Confidence            122333  56662 356654     246678888888877765

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=97.83  E-value=0.00018  Score=75.39  Aligned_cols=40  Identities=20%  Similarity=0.136  Sum_probs=32.8

Q ss_pred             CHHHHHHHHHHhhccCC--CeEEecCCHHHHHHHHHHHHHHH
Q 013008          139 SIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKF  178 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~~--e~v~~~~sG~eA~~~al~~a~~~  178 (451)
                      +....++.++|++.+|.  .+-.||+|||+||..|+.+||..
T Consensus       122 t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~  163 (608)
T TIGR03811       122 SQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNI  163 (608)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHh
Confidence            34477888899999873  35679999999999999999864

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=97.78  E-value=0.0049  Score=60.82  Aligned_cols=318  Identities=17%  Similarity=0.106  Sum_probs=159.8

Q ss_pred             CHHHHHHHHHHHhhcccc-c--CCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 013008          116 DADWIKAVVDQANVLTHV-S--NMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP  189 (451)
Q Consensus       116 ~p~v~~a~~~~~~~~~~~-~--~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~  189 (451)
                      +|+..+-+.+...++... .  +........+....++..+.   .+.-.-|.||+|++..+.+.-+.+.....+.   .
T Consensus        93 ~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I---~  169 (491)
T KOG1383|consen   93 EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGI---D  169 (491)
T ss_pred             CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCC---C
Confidence            555555555555553111 1  11222335566667777764   2334567889999888887554332211111   1


Q ss_pred             CceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHH
Q 013008          190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL  269 (451)
Q Consensus       190 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l  269 (451)
                      +..|++... -|....-+...-+-   .-...++.++...+   |+..+.+.++. ++.+++.+-.+-+.|.+-+    .
T Consensus       170 ~p~iv~~~~-v~~a~eK~a~yf~v---~l~~V~~~~~~~~~---D~~k~~~~i~e-Nti~lv~~~~~~p~G~~e~----v  237 (491)
T KOG1383|consen  170 KPNIVTPQN-VHAAFEKAARYFEV---ELREVPLDEGDYRV---DPGKVVRMIDE-NTIMLVGSLPNFPTGEIED----V  237 (491)
T ss_pred             CccccchHH-HHHHHHHHHhhEEE---EEEeeeccccceEe---cHHHHHHHhcc-ceEEEEEEcCCCCccchhh----H
Confidence            333444321 12211111110000   00012333322222   78999999876 4555555544444454444    8


Q ss_pred             HHHHHHHHH-hCCEEEEeccccCCCcc-cccccccccCC----Ccceeeec-c-cccCCccccccccc-HHHH-hhcc--
Q 013008          270 QFLRDACDD-AGALLVFDEVQCGLGRT-GYLWAHEHYGI----FPDIMTLA-K-PLAGGLPIGAALVT-EKVA-SAIN--  337 (451)
Q Consensus       270 ~~l~~l~~~-~g~llI~DEv~tg~gr~-G~~~~~~~~~~----~pdi~t~s-K-~lg~G~~iG~v~~~-~~i~-~~~~--  337 (451)
                      ++|.++.-+ +++++.+|-.-.||-.. +.. ....+++    ++-+.+-+ | +|.. -.+++++-+ +++. +.+.  
T Consensus       238 e~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~-~~~~fdFr~p~V~Sisa~~HKYGl~~-~G~~~vl~r~k~~~~~q~~~~  315 (491)
T KOG1383|consen  238 EKLADLLLEIWDIPIHVDACLGGFINPAGYL-NEEEFDFRVPGVTSISADGHKYGLAP-AGSSWVLYRNKELLPHQLFFH  315 (491)
T ss_pred             HHHHHHHHHHhCCceeecccCcccccccccc-CccccccCCCCceeEeeccceeeeee-cCcEEEEEcccccccceEEEe
Confidence            999999988 99999999998777433 221 1223333    22233333 2 2321 124565533 3322 2221  


Q ss_pred             C---C--CccCCCCCc--HHHHHHHHHHHHHhcChHHHHH----------HHhCCCCccee--cccceeEEEEec---CC
Q 013008          338 Y---G--DHGSTFAGS--PLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDV--RGLGLIIGIEFD---VS  395 (451)
Q Consensus       338 ~---~--~~~~t~~~~--~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v--~g~G~~~~~~~~---~~  395 (451)
                      .   +  .-+.|.+++  ..-.++..+++=.+-.+++.++          +.+.+..+..+  -+.-.+-.+-++   .+
T Consensus       316 ~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~  395 (491)
T KOG1383|consen  316 TDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDVN  395 (491)
T ss_pred             ccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCccc
Confidence            1   1  122333333  2234455555555555666655          33332222221  222222222222   33


Q ss_pred             hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHH-HHHHHHHHHHHHHHHhhcC
Q 013008          396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQE-LDQAVEILCKTLPVLDSNS  450 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~-i~~~l~~l~~~l~~~~~~~  450 (451)
                      -.++.+.|.+.|..+..-..+..+.+++...+..++ .++++.-|++++++++.+|
T Consensus       396 i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p  451 (491)
T KOG1383|consen  396 IFELSDLLRKKGWILNALQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKSLP  451 (491)
T ss_pred             hhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCC
Confidence            456788899999877643333445666566666665 5788899999999998776

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=97.78  E-value=0.0024  Score=65.30  Aligned_cols=158  Identities=21%  Similarity=0.204  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhhccCCC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCC
Q 013008          141 PQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRS  218 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e-~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~  218 (451)
                      +..+..+..++.++.+ ..+.+||.+.||...+..+..           +||+||+. ...|=+...++.++|. +.|..
T Consensus        71 ~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~-----------~GD~VLvd-RN~HKSi~~glilaGa~Pvyl~  138 (557)
T COG1982          71 PIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLT-----------PGDKVLVD-RNCHKSIHHGLILAGATPVYLE  138 (557)
T ss_pred             cHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcC-----------CCCEEEec-CCccHHHHHHHHHcCCceEEec
Confidence            3566667777778877 455678888888888886662           56766655 4557777666666653 33332


Q ss_pred             CCcCCCCCeeEeeCCCHHHHHHhcCCC--C-eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC-CCc
Q 013008          219 PFEPVMPGVNFVEYGNIEATRKLIQPG--K-TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-LGR  294 (451)
Q Consensus       219 ~~~~~~~~~~~~~~~d~~~le~~l~~~--~-~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-~gr  294 (451)
                      +..  .+.+-++--=+.+.+++.+..+  . ..+|+..|.+  .|....    +++|.+++.++++++..||.+-- ++.
T Consensus       139 p~~--np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah~~~~~~  210 (557)
T COG1982         139 PSR--NPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAHPAHFDF  210 (557)
T ss_pred             CCC--CccccccCCCCHHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcCcccccc
Confidence            211  1111111111678888777532  2 4577777643  355555    89999999999999999999832 333


Q ss_pred             ccccccccccCCCcceeeec--ccccC
Q 013008          295 TGYLWAHEHYGIFPDIMTLA--KPLAG  319 (451)
Q Consensus       295 ~G~~~~~~~~~~~pdi~t~s--K~lg~  319 (451)
                      .+.... .......|++|-|  |.+++
T Consensus       211 ~~~l~~-~~~~~~~~~~tqS~HK~l~a  236 (557)
T COG1982         211 SPMLPE-SALNGGADFVTQSTHKLLAA  236 (557)
T ss_pred             cccCcc-hhhhcCceEEEechhhhhhh
Confidence            332211 1222346777777  55554

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=97.75  E-value=0.0089  Score=55.89  Aligned_cols=314  Identities=18%  Similarity=0.182  Sum_probs=173.3

Q ss_pred             cCCCCCHHHHHHHHHHHhhcc------ccc----CCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHH
Q 013008          111 ALGHGDADWIKAVVDQANVLT------HVS----NMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKF  178 (451)
Q Consensus       111 ~lG~~~p~v~~a~~~~~~~~~------~~~----~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~  178 (451)
                      +||.-+..+.+.+.+.++++.      |..    +....++   ....++...|  .+.|-++||=+--+...+-..-+.
T Consensus        75 SLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~---il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKP  151 (465)
T KOG3846|consen   75 SLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEP---ILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKP  151 (465)
T ss_pred             ccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchh---hhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCC
Confidence            489888888888888887642      211    1112222   3334445555  456777887554444433322222


Q ss_pred             hhhcCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCCcCCC---CcCCCCCeeEeeCCCHHHHHHhcC--CCCeEEE
Q 013008          179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSP---FEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAV  250 (451)
Q Consensus       179 ~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~d~~~le~~l~--~~~~aav  250 (451)
                      |        +.|-+|+.-..+|..-....-+   +.|... ...   ..|.. +-..+   ..+++-+.|+  .+.+|.|
T Consensus       152 T--------ekR~KILlE~kaFPSDhYAiesQ~~lhG~~~-e~sm~~iePRE-GEetl---RteDILd~IEkngDeiA~v  218 (465)
T KOG3846|consen  152 T--------EKRFKILLEKKAFPSDHYAIESQCKLHGISP-ENSMIQIEPRE-GEETL---RTEDILDTIEKNGDEIALV  218 (465)
T ss_pred             c--------chhhhhhhccCCCCchHHHHHhhhhhcCCCh-HHheEEecccc-cccch---hHHHHHHHHHhcCCeEEEE
Confidence            2        2577888888887654333221   112110 000   01111 11111   2344444454  5689999


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-ccccccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVT  329 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~  329 (451)
                      ++..++--+|-...    +.+|...-+.-|+++=+|=+|. +|..  ..-...+|+..-.-|-=|.+..| =.+|.+...
T Consensus       219 ~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgNV--pL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvH  291 (465)
T KOG3846|consen  219 CFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGNV--PLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVH  291 (465)
T ss_pred             Eeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hcCC--ceEEeecCCceEEEeeecccccCCCccceeeee
Confidence            99999888887666    7777765566799999998885 5432  11222345433333444777533 233333322


Q ss_pred             HH----HHhhcc--------------------CCCccCCCCCcHH-HHHHHHHHHHHhcC---hHHHHH----------H
Q 013008          330 EK----VASAIN--------------------YGDHGSTFAGSPL-VCNAAIAVLDKISN---PAFLAS----------K  371 (451)
Q Consensus       330 ~~----i~~~~~--------------------~~~~~~t~~~~~~-~~aaa~aal~~~~~---~~~~~~----------~  371 (451)
                      +.    ...++.                    ++..+...+.+|+ ..+|.++.|++...   .++..+          +
T Consensus       292 ekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL  371 (465)
T KOG3846|consen  292 EKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYL  371 (465)
T ss_pred             hhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHH
Confidence            21    111111                    1112333344443 34455566665433   222222          1


Q ss_pred             Hh-----CCC------Cc-----ceecccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeC-CCCCCHHHHHH
Q 013008          372 LA-----RNP------HV-----KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP-PLIISEQELDQ  434 (451)
Q Consensus       372 ~~-----~~~------~~-----~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~-~~~~t~e~i~~  434 (451)
                      .+     +++      .+     ..+..+|.-+.+.|+.+...++++|.++|+..-...+ ++||+.| ++-.+-.|+-.
T Consensus       372 ~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~~~vfqeL~krGv~~DkR~P-NvIRvAPvpLYN~f~Dvy~  450 (465)
T KOG3846|consen  372 LKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPTPKVFQELHKRGVIGDKRRP-NVIRVAPVPLYNTFSDVYI  450 (465)
T ss_pred             HHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCchHHHHHHHHcCeeccccCC-CceEeecchhhccHHHHHH
Confidence            11     111      11     1123457777777777778899999999998876654 8999986 67789999999


Q ss_pred             HHHHHHHHHHHHhh
Q 013008          435 AVEILCKTLPVLDS  448 (451)
Q Consensus       435 ~l~~l~~~l~~~~~  448 (451)
                      ++..|.++++.+..
T Consensus       451 f~n~L~e~~d~~es  464 (465)
T KOG3846|consen  451 FVNALNEAMDKLES  464 (465)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999887653

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=97.73  E-value=0.0018  Score=60.48  Aligned_cols=261  Identities=16%  Similarity=0.209  Sum_probs=142.4

Q ss_pred             cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHH
Q 013008          161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK  240 (451)
Q Consensus       161 ~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~  240 (451)
                      +-||+.|+..+-..+..+.         .+..|-+..|.+..+.......+-......+|+..  +...+   |++.+-.
T Consensus       105 slsGTGAl~~~A~Fl~~~~---------~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~--~~k~~---d~e~~Ls  170 (410)
T KOG1412|consen  105 SLSGTGALRIAADFLATFY---------NKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDA--ENKCV---DLEGFLS  170 (410)
T ss_pred             eccccchhhhhHHHHHHhc---------ccceeEecCCchhHHHHHHHHcCCceeeeeeeecC--CCcee---cHHHHHH
Confidence            4578888877777555443         35668888888766543322221111111112211  11111   5666655


Q ss_pred             hcCC-CCeEEEEEcc-ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc----ccccccc---CCCccee
Q 013008          241 LIQP-GKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----LWAHEHY---GIFPDIM  311 (451)
Q Consensus       241 ~l~~-~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~----~~~~~~~---~~~pdi~  311 (451)
                      .|+. .....+++-. -++++| +-|++|.+.+|+++.++.+.+..+|-+|.|| ..|.    .|+..++   |. +=++
T Consensus       171 dl~~APe~si~iLhaCAhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGf-ASGD~~~DawAiR~fV~~g~-e~fv  247 (410)
T KOG1412|consen  171 DLESAPEGSIIILHACAHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGF-ASGDLDADAWAIRYFVEQGF-ELFV  247 (410)
T ss_pred             HHhhCCCCcEEeeeccccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhccc-ccCCccccHHHHHHHHhcCC-eEEE
Confidence            5652 2233333333 344445 5789999999999999999999999999999 4553    3444332   32 1223


Q ss_pred             --eecccccC-Cccccccc--c-cHHHHhhccCC---CccCCCCCcHHHHHHHHHHHHHhcChHHHHH------------
Q 013008          312 --TLAKPLAG-GLPIGAAL--V-TEKVASAINYG---DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS------------  370 (451)
Q Consensus       312 --t~sK~lg~-G~~iG~v~--~-~~~i~~~~~~~---~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~------------  370 (451)
                        +|+|-+|- +=|+|.+.  + ++.++..+...   ....+++. |++.. |.-+-+++..+++.++            
T Consensus       248 ~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SN-PPAyG-ArIV~kvL~tP~lre~W~~sik~MssRI  325 (410)
T KOG1412|consen  248 CQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSN-PPAYG-ARIVHKVLSTPELREQWIQSIKTMSSRI  325 (410)
T ss_pred             EhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCC-Ccchh-hHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence              58898874 56777542  2 44554443221   22345543 33322 2333344555544443            


Q ss_pred             ------HHh-----CCCC-c-ceecccceeEEEEecCChHHHHHHHHH-CCceeeecCCCCEEEEeCCCCCCHHHHHHHH
Q 013008          371 ------KLA-----RNPH-V-KDVRGLGLIIGIEFDVSATPVVDACRD-SGLLVLTAGKGNVVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       371 ------~~~-----~~~~-~-~~v~g~G~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l  436 (451)
                            +..     +.|+ . .-++..|+|-   +......-++.|.+ +.|++.+.|     |+.++ ......+|...
T Consensus       326 ~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFS---yTGLtp~qV~~li~~h~vyLl~~G-----RInis-GLN~~NveyVA  396 (410)
T KOG1412|consen  326 KKMRTALRDHLVALKTPGTWDHITQQIGMFS---YTGLTPAQVDHLIENHKVYLLSDG-----RINIS-GLNMKNVEYVA  396 (410)
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHhhcccee---ecCCCHHHHHHHHHhceEEEecCC-----cEeee-ccccccHHHHH
Confidence                  111     1121 0 1134445442   22223445566665 578887754     45444 44667899999


Q ss_pred             HHHHHHHHHHhhc
Q 013008          437 EILCKTLPVLDSN  449 (451)
Q Consensus       437 ~~l~~~l~~~~~~  449 (451)
                      .+|+++++.+..+
T Consensus       397 kAIde~Vr~~~~~  409 (410)
T KOG1412|consen  397 KAIDETVRAIKSN  409 (410)
T ss_pred             HHHHHHHHhhccC
Confidence            9999999887654

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.67  E-value=0.0066  Score=58.36  Aligned_cols=181  Identities=14%  Similarity=0.113  Sum_probs=104.7

Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccceeeec--ccccC-Cc
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAG-GL  321 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~s--K~lg~-G~  321 (451)
                      +.+-|...++....|+.++...+      +-.  +.++|+|-.-.-|+|        ..++ .-|++.+|  |-+|+ | 
T Consensus       144 ~~ayv~~~~NeTi~Gv~v~~~p~------~~~--~~~~v~D~SS~ilsr--------~iDvsk~dviyagaQKnlGpaG-  206 (365)
T COG1932         144 NDAYVHFCWNETISGVEVPELPD------IGS--DGLLVADASSAILSR--------PIDVSKYDVIYAGAQKNLGPAG-  206 (365)
T ss_pred             CccEEEEecCCcccceEccCCCC------CCC--CceEEEecccHHhcC--------CCChhHcceEEEehhhccCccc-
Confidence            34446666666566766553221      111  278888854322221        1122 35677776  99985 6 


Q ss_pred             ccccccccHHHHhhccCC------------CccCCCCCcHHH-HHHHHHHHHHhcChH----HHHH----------HHhC
Q 013008          322 PIGAALVTEKVASAINYG------------DHGSTFAGSPLV-CNAAIAVLDKISNPA----FLAS----------KLAR  374 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~------------~~~~t~~~~~~~-~aaa~aal~~~~~~~----~~~~----------~~~~  374 (451)
                       ++.++.++++.+++...            ...++|+.+|.. .....-+++.+...+    +.++          ..+.
T Consensus       207 -ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~  285 (365)
T COG1932         207 -LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDK  285 (365)
T ss_pred             -eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence             88889999998887542            245677766543 344445566554321    1111          2222


Q ss_pred             CCC----cceeccccee-EEEEec--CChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          375 NPH----VKDVRGLGLI-IGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       375 ~~~----~~~v~g~G~~-~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .+.    +.. ..+..| +.|.+.  .....|..++.++|+....++. .+-+|.++--+++.|+++.+++-|+.+.++
T Consensus       286 s~fy~~~v~~-~~RS~mnV~f~~~~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         286 SDFYRNLVAK-ANRSRMNVTFTLVDAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             CCccccccch-hhccceeEEEEcCcHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence            231    111 112222 223332  2346688888888987765543 233999988899999999999999887764

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=97.58  E-value=0.0046  Score=60.50  Aligned_cols=205  Identities=13%  Similarity=0.103  Sum_probs=94.4

Q ss_pred             CHHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc---cccCCC
Q 013008          234 NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH---EHYGIF  307 (451)
Q Consensus       234 d~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~---~~~~~~  307 (451)
                      |++++|++++   .+.+.+|+..+.. ..+ ..+  +.+++|.++|++||++.|+.-+|+ +--.-.....   ...|..
T Consensus       140 d~~~ie~~i~~~G~~~iLcvltttsc-fap-r~~--D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~~~i~~a~~~GRv  214 (389)
T PF05889_consen  140 DLEAIEAKIEELGADNILCVLTTTSC-FAP-RLP--DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCMHLIQQAWRVGRV  214 (389)
T ss_dssp             HHHHHHHHHHHHCGGGEEEEEEESST-TTT-B------HHHHHHHHHHHT--EEEEGTTT-TT-HHHHHHHHHHHHHSTC
T ss_pred             cHHHHHHHHHHhCCCCeEEEEEecCc-cCC-CCC--ccHHHHHHHHHHcCCceEEccchh-hhHHHHHHHHHHHHhcCCc
Confidence            6788888886   3345555554433 322 222  349999999999999999999984 4100000000   012332


Q ss_pred             c-ceeeecccccCCccccccc-c-cHHHHhhccCCCccCCCCCcH---------HHHHHHHHHHHHhc-ChHH-HHH---
Q 013008          308 P-DIMTLAKPLAGGLPIGAAL-V-TEKVASAINYGDHGSTFAGSP---------LVCNAAIAVLDKIS-NPAF-LAS---  370 (451)
Q Consensus       308 p-di~t~sK~lg~G~~iG~v~-~-~~~i~~~~~~~~~~~t~~~~~---------~~~aaa~aal~~~~-~~~~-~~~---  370 (451)
                      | ++-++.|-|=-+.. |.++ + .+..++.+...+-+-.+..+.         +++..-...|.... .-.+ .++   
T Consensus       215 da~vqS~dkNF~VPvG-gai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~  293 (389)
T PF05889_consen  215 DAFVQSTDKNFMVPVG-GAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKK  293 (389)
T ss_dssp             SEEEEEHHHHHCEESS-HEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeecCCCEEecCC-CcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 22245554421100 2222 2 355555554322111111111         22222222221110 0011 111   


Q ss_pred             HHhCCC-CcceecccceeEEEEec-------CChHHHHHHHHHCCce----eeecCC----------CCEEEEeCCCCCC
Q 013008          371 KLARNP-HVKDVRGLGLIIGIEFD-------VSATPVVDACRDSGLL----VLTAGK----------GNVVRLVPPLIIS  428 (451)
Q Consensus       371 ~~~~~~-~~~~v~g~G~~~~~~~~-------~~~~~~~~~l~~~Gv~----~~~~~~----------~~~iri~~~~~~t  428 (451)
                      +.+++. .+...+..-..+.+.++       .....|...|..+||.    +.+.+.          -.++-+.-.+.++
T Consensus       294 ~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~  373 (389)
T PF05889_consen  294 WAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMT  373 (389)
T ss_dssp             HHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--
T ss_pred             HHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCC
Confidence            334443 22223233334455553       1235678888888663    222211          1457776688999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013008          429 EQELDQAVEILCKTLP  444 (451)
Q Consensus       429 ~e~i~~~l~~l~~~l~  444 (451)
                      +||+|.++++|+++++
T Consensus       374 ~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  374 REEVDYFVKRLDKIIK  389 (389)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.55  E-value=0.04  Score=60.23  Aligned_cols=263  Identities=13%  Similarity=0.134  Sum_probs=135.5

Q ss_pred             HHHHHHHHhhccCCC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..++...++++.|+|  +.-....++.+-| |+.+++.+++.       .+++|++.+ .-|..+...+..-.       
T Consensus       126 l~e~Qtmi~~LtGm~vaNASl~D~atA~aE-A~~ma~~~~~~-------k~~~~~v~~-~~hP~~~~v~~t~~-------  189 (954)
T PRK12566        126 LLNFQQMTIDLTGLDLANASLLDEATAAAE-AMALAKRVAKS-------KSNRFFVDE-HCHPQTLSVLRTRA-------  189 (954)
T ss_pred             HHHHHHHHHHHhCchhhhhhhccchhHHHH-HHHHHHHHhhc-------CCCEEEECC-CCCHHHHHHHHHhh-------
Confidence            345666778888866  4456666666666 44444444431       245555554 55555544332111       


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                       .+  .++..+.    +++++.+.. ++++|++.-.+. -|.+..    +++|.++++++|+++|+-   +..--.+..-
T Consensus       190 -~~--~g~~i~~----~~~~~~~~~-~~~~v~vq~P~~-~G~i~d----~~~i~~~~h~~gal~~~~---~d~laL~ll~  253 (954)
T PRK12566        190 -EG--FGFELVV----DAVDNLAAH-AVFGALLQYPDT-HGEIRD----LRPLIDQLHGQQALACVA---ADLLSLLVLT  253 (954)
T ss_pred             -hc--CCcEEEE----cchhhcCCC-CEEEEEEECCCC-ceEEcc----HHHHHHHHHHcCCEEEEE---eCHHHHhCCC
Confidence             11  1222221    344555543 688888754333 354433    899999999999987732   2210111111


Q ss_pred             cccccCCCcceee-----eccccc-CCcccccccccHHHHhhccCCC----------------------------ccCCC
Q 013008          300 AHEHYGIFPDIMT-----LAKPLA-GGLPIGAALVTEKVASAINYGD----------------------------HGSTF  345 (451)
Q Consensus       300 ~~~~~~~~pdi~t-----~sK~lg-~G~~iG~v~~~~~i~~~~~~~~----------------------------~~~t~  345 (451)
                      ....+  ..||++     ||=.++ ||--.|++.+++++...+....                            ..+..
T Consensus       254 ~Pge~--GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNI  331 (954)
T PRK12566        254 PPGEL--GADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNI  331 (954)
T ss_pred             Chhhc--CCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchh
Confidence            11122  356652     333444 3445678888888776653110                            11222


Q ss_pred             CCcHHHHHHHHHHHHHh-cChHHHH---H-------HHhCC--CCcceecccceeEEEEec--CChHHHHHHHHHCCcee
Q 013008          346 AGSPLVCNAAIAVLDKI-SNPAFLA---S-------KLARN--PHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLV  410 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~-~~~~~~~---~-------~~~~~--~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~  410 (451)
                      +.|..-+|.+.+..-.+ -.+++.+   +       +.+.+  ..+..+ ..-+|--|.++  ..+.++.++..++|+.+
T Consensus       332 CT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~-~~~fF~~~~v~~~~~~~~~~~~a~~~~~n~  410 (954)
T PRK12566        332 CTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRL-NRHFFDTLTLEVGGAQAAIIESAEAARINL  410 (954)
T ss_pred             hHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCccceEEEEccCCHHHHHHHHHHCCCee
Confidence            22322222222222111 2222222   1       11111  122111 11223222222  24677889999999998


Q ss_pred             eecCCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          411 LTAGKGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       411 ~~~~~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      .-... +.+.+++.-++|.+|++.+++.+.
T Consensus       411 r~~~~-~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        411 RILGR-GRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             EEeCC-CeEEEEeCCCCCHHHHHHHHHHhc
Confidence            87655 678899899999999999999984

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=97.28  E-value=0.0093  Score=55.65  Aligned_cols=201  Identities=15%  Similarity=0.147  Sum_probs=119.2

Q ss_pred             CCHHHHHHHHHH-Hhh--cccccCCCCCHH-HHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008          115 GDADWIKAVVDQ-ANV--LTHVSNMYYSIP-QIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK  187 (451)
Q Consensus       115 ~~p~v~~a~~~~-~~~--~~~~~~~~~~~~-~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~  187 (451)
                      |..+|.+|.++. +..  +...+++++++. +..|.+-.++.++.|..++   .-||+.|+..|+.-.+.          
T Consensus        36 Nq~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LR----------  105 (416)
T COG4100          36 NQKKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILR----------  105 (416)
T ss_pred             HHHHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccC----------
Confidence            345666666652 221  222233334443 8889888999988553332   23799999999886552          


Q ss_pred             CCCceEEEEcCCccCChhhhhhccCCC-----CcCCCC--cCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCC
Q 013008          188 EPATEFVSFTNSFHGRTMGALALTSKE-----HYRSPF--EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG  260 (451)
Q Consensus       188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G  260 (451)
                       |+|..+...+.=.-.....+.+.+..     .+...|  .++.++-..    |.+.++..+.+ +++.|.+--..|-.-
T Consensus       106 -pgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gki----D~~~v~~~i~~-~tkli~IQRS~GY~~  179 (416)
T COG4100         106 -PGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKI----DIQAVKTAISD-RTKLIGIQRSKGYAW  179 (416)
T ss_pred             -CCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecccccCCcc----cHHHHHHhcCc-cceEEEEEeccCcCC
Confidence             78988887654222211112222211     001011  122222111    78999999974 677777765544332


Q ss_pred             ccccCHHHHHHHHHHHHHh--CCEEEEeccccCCCcccccccccccCCCccee--eecccccCCc--ccccccccHHHHh
Q 013008          261 IYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL--PIGAALVTEKVAS  334 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~--~iG~v~~~~~i~~  334 (451)
                      --..+-+.++++.++.++-  ++++.+|..|..|--.     .+-..+..|++  ++-|-.|||+  ..||+.+++++.+
T Consensus       180 RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~-----~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve  254 (416)
T COG4100         180 RPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEE-----KEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVE  254 (416)
T ss_pred             CCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhc-----cCccccchhhhccceeeCCCCceeeccceeechHHHHH
Confidence            1123456788888888774  6889999999767322     22224556766  6779888873  5688999999988


Q ss_pred             hc
Q 013008          335 AI  336 (451)
Q Consensus       335 ~~  336 (451)
                      ..
T Consensus       255 ~~  256 (416)
T COG4100         255 AA  256 (416)
T ss_pred             hh
Confidence            75

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=97.23  E-value=0.00065  Score=64.73  Aligned_cols=265  Identities=17%  Similarity=0.147  Sum_probs=133.7

Q ss_pred             HHHHHHHHhhc---cC-----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          142 QIELAKRLVAC---SF-----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       142 ~~~l~~~l~~~---~~-----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      ..+|++.|.++   .|     ...++|.+|+++-+.+|+-++.....  .   ..+.-+|+...|-|.-+....--+.. 
T Consensus        45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~--~---~~~p~~VVa~aPYY~~Y~~qt~~f~s-  118 (363)
T PF04864_consen   45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNAS--P---SSSPASVVAAAPYYSSYPEQTDFFDS-  118 (363)
T ss_dssp             -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT---T---TSSSEEEEE-SS--CHHHHHCCCT-B-
T ss_pred             cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCC--C---CCCCceeEecCCCccchHHHHHhccc-
Confidence            45565555554   34     34688888889999988886543211  0   12456799999988655433211110 


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                                 ....+.  .|.......=.....-=+++.|+|+.|...       +   .+++.-+..+|.|=+|-.--
T Consensus       119 -----------~~y~w~--Gda~~~~~~~~~~~~IElVTSPNNPDG~lr-------~---~V~~g~~~k~I~D~AYYWPh  175 (363)
T PF04864_consen  119 -----------RLYKWA--GDASNFKNSDNPSPYIELVTSPNNPDGQLR-------E---AVLNGSSGKVIHDLAYYWPH  175 (363)
T ss_dssp             -----------TTEEEE--EECCCGTT-S-CCGEEEEEESS-TTT----------------SSTTTEEEEEEE-TT-STT
T ss_pred             -----------cCcccc--ccHHhhccCCCCCCeEEEEeCCCCCccccc-------c---hhcCCCCcceeeeeeeeccc
Confidence                       011110  011111100012345557777776665321       1   13455667789998874221


Q ss_pred             cccccccccccCCCccee--eeccccc-CCccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC----h
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLA-GGLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN----P  365 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~  365 (451)
                      ++.-..     ...-||+  |+||.-| +|-|+||.+.+ +++.+.+......+|.+.+-=+|.-++..|+.+.+    +
T Consensus       176 yTpI~~-----~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~  250 (363)
T PF04864_consen  176 YTPITA-----PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTE  250 (363)
T ss_dssp             TS---S------B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHH
T ss_pred             ccccCC-----CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCC
Confidence            221111     1123554  7899888 58999998876 56666654444456777776666666666655321    1


Q ss_pred             ----HHH--------HH------HHhC--------C-C----Cccee-cccceeEEEEecCCh-HHHHHHHHHCCceeee
Q 013008          366 ----AFL--------AS------KLAR--------N-P----HVKDV-RGLGLIIGIEFDVSA-TPVVDACRDSGLLVLT  412 (451)
Q Consensus       366 ----~~~--------~~------~~~~--------~-~----~~~~v-~g~G~~~~~~~~~~~-~~~~~~l~~~Gv~~~~  412 (451)
                          ++.        ++      ..+.        + |    ....+ .+...+.|+.++... .+....|++.||+...
T Consensus       251 ~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~~I~tr~  330 (363)
T PF04864_consen  251 KGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREAKIITRS  330 (363)
T ss_dssp             TTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCTTEEEEE
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHhCCcccCC
Confidence                111        11      1111        1 1    11112 234568888885332 3455666677888776


Q ss_pred             cC----CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          413 AG----KGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       413 ~~----~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      +.    ...++|+  ++..++++.|.++++|.+.
T Consensus       331 G~~fga~~ryVRl--Sml~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  331 GVLFGADSRYVRL--SMLKRDDDFDQLLERLSKL  362 (363)
T ss_dssp             GGGGTS-TTEEEE--ESSS-HHHHHHHHHHHHCC
T ss_pred             CCccCCCCCeEEE--eccCCHHHHHHHHHHHHhh
Confidence            52    1367888  6788999999999999753

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=96.99  E-value=0.034  Score=53.04  Aligned_cols=227  Identities=17%  Similarity=0.158  Sum_probs=115.6

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhh-ccc-ccCCCCCHHHHHHHHHHhhccC--
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTH-VSNMYYSIPQIELAKRLVACSF--  154 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~-~~~~~~~~~~~~l~~~l~~~~~--  154 (451)
                      +.|..+-=|-|+| .|.+|+.|+=              |.|++|=.+.+.. ..- +..........++..+|+=--.  
T Consensus        50 ~n~~KiNLgvGaY-Rdd~gKp~vL--------------~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~  114 (427)
T KOG1411|consen   50 PNPKKINLGVGAY-RDDNGKPYVL--------------PSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSP  114 (427)
T ss_pred             CCcceeeecccce-ecCCCCeeee--------------HHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCch
Confidence            3566777788887 5667887751              5666665543331 110 1111122223344444431111  


Q ss_pred             ---CCeEEe--cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE
Q 013008          155 ---ADRVFF--SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF  229 (451)
Q Consensus       155 ---~e~v~~--~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (451)
                         -.++..  +-||+-|...+-..+..|.         +...|.+.+|++-.+.... ...+.+.-  .|+-..+...-
T Consensus       115 ~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~---------~~~~I~ip~PTWgNh~~if-~~ag~~~~--~yrYyd~~t~g  182 (427)
T KOG1411|consen  115 VIKEKRIVTVQTLSGTGALRVGAEFLARFY---------PSRDIYIPDPTWGNHKNIF-KDAGLPVK--FYRYYDPKTRG  182 (427)
T ss_pred             hhhccceeEEEeccCcchhhHHHHHHHhhc---------cccceeecCCcccccCccc-cccCccee--eeeeccccccc
Confidence               224443  4567777766666555554         3667999999885543211 11111100  00011111111


Q ss_pred             eeCCCHHH-HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc----cccccc
Q 013008          230 VEYGNIEA-TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEHY  304 (451)
Q Consensus       230 ~~~~d~~~-le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~~~  304 (451)
                      +   |.+. ++++-+...-..|++-.-.+|+..+-|+.+.+++|.++-++.+.+-++|-+|.|| -.|..    ++...+
T Consensus       183 l---d~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGf-aSG~~d~DA~avR~F  258 (427)
T KOG1411|consen  183 L---DFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGF-ASGDLDKDAQAVRLF  258 (427)
T ss_pred             c---chHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhccc-ccCCchhhHHHHHHH
Confidence            1   3333 2222221123345554433333336789999999999999999999999999999 45542    111111


Q ss_pred             ---CCCcce-eeecccccC-Ccccccc--cc-cHHHHhhc
Q 013008          305 ---GIFPDI-MTLAKPLAG-GLPIGAA--LV-TEKVASAI  336 (451)
Q Consensus       305 ---~~~pdi-~t~sK~lg~-G~~iG~v--~~-~~~i~~~~  336 (451)
                         |...-+ -+++|-+|- |=|+|++  ++ +.+...++
T Consensus       259 ~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV  298 (427)
T KOG1411|consen  259 VEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRV  298 (427)
T ss_pred             HHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHH
Confidence               222211 167888873 5577765  33 34444443

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=96.91  E-value=0.01  Score=57.93  Aligned_cols=178  Identities=18%  Similarity=0.119  Sum_probs=101.2

Q ss_pred             HHHHHHHHhhccC--C-CeEEecCCHHHHHHHHHHHHHHHhh----hcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          142 QIELAKRLVACSF--A-DRVFFSNTGTEANEAAIKFARKFQR----HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       142 ~~~l~~~l~~~~~--~-e~v~~~~sG~eA~~~al~~a~~~~~----~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      ..++-.++.+..+  . .+-+|++||+-+|..++.+||--.-    ..+-.  .=++-|++.+.--|-+..-+...-|-.
T Consensus       143 E~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~--~~p~lilFtSeesHYSi~kaAa~lg~g  220 (510)
T KOG0629|consen  143 EEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMF--ALPPLILFTSEESHYSIKKAAAFLGLG  220 (510)
T ss_pred             hHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhh--cCCcEEEEecccchhhHHHHHHHhccC
Confidence            4455556666655  3 3778999999999999999983210    00100  012456666655565543333322111


Q ss_pred             CcCCCCcCCCCCeeEeeCC-----CHHHHHHhcC----CCCeEEEEEccccCCC--CccccCHHHHHHHHHHHHHhCCEE
Q 013008          215 HYRSPFEPVMPGVNFVEYG-----NIEATRKLIQ----PGKTAAVFVEPIQGEG--GIYSATKEFLQFLRDACDDAGALL  283 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~----~~~~aavi~ep~~~~~--G~~~~~~~~l~~l~~l~~~~g~ll  283 (451)
                               ...+..++.+     ++++||+.|.    .+-+- ++++...|++  |..-+    |..|+++|++|+.++
T Consensus       221 ---------td~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~P-f~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWm  286 (510)
T KOG0629|consen  221 ---------TDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVP-FFVNATAGTTVLGAFDD----LNGIADICEKHKLWM  286 (510)
T ss_pred             ---------CceeEEecccccCccchHHHHHHHHHHHhcCCCC-eEEEecCCceeeeccCc----HHHHHHHHHhcCEEE
Confidence                     1223333333     5789998885    11122 3333333332  44444    999999999999999


Q ss_pred             EEeccccCCCcccccccccccCCC-cceeeec--ccccCCcccccccccHH-HHhh
Q 013008          284 VFDEVQCGLGRTGYLWAHEHYGIF-PDIMTLA--KPLAGGLPIGAALVTEK-VASA  335 (451)
Q Consensus       284 I~DEv~tg~gr~G~~~~~~~~~~~-pdi~t~s--K~lg~G~~iG~v~~~~~-i~~~  335 (451)
                      .+|-+..|---...-.-....|+. .|-++-+  |-+|..++.++++.+++ +++.
T Consensus       287 HvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~  342 (510)
T KOG0629|consen  287 HVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQR  342 (510)
T ss_pred             EeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHh
Confidence            999998541011111111223453 4555554  78888899999888754 4443

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=96.83  E-value=0.0056  Score=52.69  Aligned_cols=55  Identities=20%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             CCCHHHHHHHHHHhhccC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccC
Q 013008          137 YYSIPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHG  202 (451)
Q Consensus       137 ~~~~~~~~l~~~l~~~~~------~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg  202 (451)
                      +....+.++++++.+.++      .++|++|+|+++|++.+++++.           +++|.|++.+|.|+|
T Consensus        93 G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~-----------dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA-----------DPGDAFLVPTPYYAA  153 (153)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc-----------CCCCEEEEeCCCCCC
Confidence            344557888888877643      5799999999999999999776           379999999999975

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=96.45  E-value=0.11  Score=49.96  Aligned_cols=281  Identities=19%  Similarity=0.184  Sum_probs=140.4

Q ss_pred             CCHHHHHHHHHHHhh-cccc---cCCC-CCHHHHHHHHHHhh-----ccCCC------eEEecCCHHHHHHHHHHHHHHH
Q 013008          115 GDADWIKAVVDQANV-LTHV---SNMY-YSIPQIELAKRLVA-----CSFAD------RVFFSNTGTEANEAAIKFARKF  178 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~-~~~~---~~~~-~~~~~~~l~~~l~~-----~~~~e------~v~~~~sG~eA~~~al~~a~~~  178 (451)
                      .+-.|.+|+-..+.. +.-+   ..+| .++ ..+-.|.|++     .++.|      .|. .-||+-||..+-.++.. 
T Consensus        52 ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne-~ID~iE~LCq~RALeaF~ldp~kWGVNVQ-p~SGSPANfavYtall~-  128 (477)
T KOG2467|consen   52 TSRAVMEALGSCLTNKYSEGYPGARYYGGNE-YIDQIELLCQKRALEAFGLDPEKWGVNVQ-PYSGSPANFAVYTALLK-  128 (477)
T ss_pred             hHHHHHHHHhHHhhcccccCCCcccccCcch-HHHHHHHHHHHHHHHHhCCCHHHCceeec-cCCCCchhhHHHhhhcC-
Confidence            456777877776643 2211   1122 233 3333334433     34422      233 34799999988877663 


Q ss_pred             hhhcCCCCCCCCceEEEEcCCc-----cCChhhhhhccCCCCcCCCC-cCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE
Q 013008          179 QRHSNPDSKEPATEFVSFTNSF-----HGRTMGALALTSKEHYRSPF-EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV  252 (451)
Q Consensus       179 ~~~~~~~~~~~~~~ii~~~~~y-----hg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~  252 (451)
                                |.++|.-.+---     ||+....-..|....+...+ ....+..-.+   |.|.||+.-..-++.++|+
T Consensus       129 ----------Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~I---DYD~Le~~A~~frPk~iia  195 (477)
T KOG2467|consen  129 ----------PHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYI---DYDKLEKTATLFRPKLIIA  195 (477)
T ss_pred             ----------CCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCce---ehHHHHHHHHhcCCcEEEe
Confidence                      577777665322     34332222223222222111 0112223334   5566665544334566666


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccc-cccccccCCCcceee--ecccccCCcccccccc
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGY-LWAHEHYGIFPDIMT--LAKPLAGGLPIGAALV  328 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~-~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~  328 (451)
                      -..      .-+-.-...+++++|++.|++|++|=+| +|+-..|. ...+++    .||+|  .=|+|-| -|.|.|..
T Consensus       196 G~S------aY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~DiVTTTTHKsLRG-PRg~mIFy  264 (477)
T KOG2467|consen  196 GTS------AYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDIVTTTTHKSLRG-PRGAMIFY  264 (477)
T ss_pred             ccc------cchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cceeeccccccccC-CcceeEEE
Confidence            321      1112223788999999999999999997 55544443 223333    45664  4488864 24444443


Q ss_pred             cHHHH---------------hhcc----CCCccCCCCCcHHHHHHHHHHHHHhcChHHHHHHHhCCCCcceecccceeEE
Q 013008          329 TEKVA---------------SAIN----YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKLARNPHVKDVRGLGLIIG  389 (451)
Q Consensus       329 ~~~i~---------------~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~v~g~G~~~~  389 (451)
                      ++-+.               +.+.    ++.+++..+ +  ..++...+|..-..+++.+ ..++   +           
T Consensus       265 RkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHN-h--tIaalAvALkQa~tpefk~-Yq~q---V-----------  326 (477)
T KOG2467|consen  265 RKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHN-H--TIAALAVALKQAMTPEFKE-YQKQ---V-----------  326 (477)
T ss_pred             eccCCcCCCCCCCcceechhhhhhhhccccccCCCCc-c--hHHHHHHHHHhhCCHHHHH-HHHH---H-----------
Confidence            33211               1111    122333332 2  2233334455555566544 2221   1           


Q ss_pred             EEecCChHHHHHHHHHCCceeeecCCCCEEEE-e-CCCCCCHHHHHHHHHHHHHHH
Q 013008          390 IEFDVSATPVVDACRDSGLLVLTAGKGNVVRL-V-PPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       390 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri-~-~~~~~t~e~i~~~l~~l~~~l  443 (451)
                         ..++..+++.|.++|.-+..+|..+.+-+ - -+..++-..+++.++.+.-++
T Consensus       327 ---~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~  379 (477)
T KOG2467|consen  327 ---LKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIAL  379 (477)
T ss_pred             ---HHHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhh
Confidence               02466788888888887776665344321 1 145566666777776665444

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=92.97  E-value=0.65  Score=46.28  Aligned_cols=55  Identities=22%  Similarity=0.278  Sum_probs=40.0

Q ss_pred             CHHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          234 NIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       234 d~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                      +.+.|+++|+    .+-+-.+++-. .|++|.  ..-+.|.+|..+|+++|++|.+|-+|+|
T Consensus       218 r~~~L~~AIe~D~arGlIPf~v~at-~GTT~~--ca~D~l~elg~Vc~~~glWLHVDAAYAG  276 (511)
T KOG0628|consen  218 RGDTLRKAIEEDIARGLIPFFVCAT-LGTTSS--CAFDELEELGPVCREEGLWLHVDAAYAG  276 (511)
T ss_pred             CHHHHHHHHHHHHhCCCccEEEEEe-ecCccc--cccccHHHhcchhhhcCEEEEeehhhcc
Confidence            4678888886    23344455444 455544  3456699999999999999999999986

>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated

Probab=85.07  E-value=19  Score=35.23  Aligned_cols=50  Identities=12%  Similarity=0.099  Sum_probs=31.9

Q ss_pred             CCCcceeeecccccCCccccccccc--HH-HHhhccC-CCccCCCCCcHHHHHHHHHHHHH
Q 013008          305 GIFPDIMTLAKPLAGGLPIGAALVT--EK-VASAINY-GDHGSTFAGSPLVCNAAIAVLDK  361 (451)
Q Consensus       305 ~~~pdi~t~sK~lg~G~~iG~v~~~--~~-i~~~~~~-~~~~~t~~~~~~~~aaa~aal~~  361 (451)
                      ++.|.+++       |+|+|||-+.  ++ +++.--+ ....++-+|++++.++..+.++.
T Consensus       279 ~~~palvi-------g~PVGFV~a~esKe~L~~~~vP~I~~~G~kGGs~vAaa~vNal~~~  332 (335)
T PRK05782        279 GVDIPFIV-------ATPPGFTNAKEVKEALIESGIPSVVLRGTYGGSGIAVAIINELIKM  332 (335)
T ss_pred             CCCCcEEE-------EeCCcccCHHHHHHHHHhCCCCEEEEecCCCcHHHHHHHHHHHHHH
Confidence            56777665       7899999763  33 3321111 13456788999988887776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	451
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		1e-93
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		2e-91
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		9e-82
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		2e-77
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		8e-77
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		2e-76
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		3e-76
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		9e-60
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		1e-59
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		6e-59
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		2e-58
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		1e-54
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		4e-54
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		5e-54
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		8e-54
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		1e-53
1oat_A	439	Ornithine Aminotransferase Length = 439		3e-53
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		3e-53
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		1e-51
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		8e-45
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		5e-43
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		2e-42
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		3e-41
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		2e-39
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		7e-39
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		9e-39
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		1e-38
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		1e-38
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		6e-38
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		6e-38
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		6e-37
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		1e-33
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		4e-33
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		2e-31
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		6e-31
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		8e-31
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		9e-31
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		1e-30
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		2e-30
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		3e-30
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		4e-30
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		6e-30
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		7e-30
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		9e-30
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		1e-29
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		1e-29
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		6e-29
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		6e-29
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		7e-29
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		2e-28
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		3e-28
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		2e-25
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		7e-25
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		7e-24
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		6e-23
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		1e-22
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		1e-22
2cfb_A	411	Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm		2e-22
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		2e-22
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		3e-22
3bs8_A	438	Crystal Structure Of Glutamate 1-Semialdehyde Amino		4e-22
4e77_A	429	2.0a Crystal Structure Of A Glutamate-1-Semialdehyd		1e-20
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		1e-20
3k28_A	429	Crystal Structure Of A Glutamate-1-Semialdehyde Ami		1e-20
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		2e-20
2gsa_A	432	Crystal Structure Of Glutamate-1-Semialdehyde Amino		1e-19
2hoy_A	432	Inter-Subunit Signaling In Gsam Length = 432		1e-19
3fq7_A	427	Gabaculine Complex Of Gsam Length = 427		1e-19
3fqa_A	427	Gabaculien Complex Of Gabaculine Resistant Gsam Ver		2e-19
3fq8_A	427	M248i Mutant Of Gsam Length = 427		3e-19
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		3e-19
4ao9_A	454	Biochemical Properties And Crystal Structure Of A N		1e-18
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		2e-17
2yku_A	465	Structural Determinants Of The Beta-Selectivity Of		8e-16
4a0g_A	831	Structure Of Bifunctional Dapa Aminotransferase-Dtb		6e-11
4a0f_A	831	Structure Of Selenomethionine Substituted Bifunctio		2e-09
2cy8_A	453	Crystal Structure Of D-Phenylglycine Aminotransfera		5e-09

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/387 (46%), Positives = 244/387 (63%), Gaps = 23/387 (5%)
Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           L+ TY+R P     GKG  +YD +G  YLD +SGIAVN LGH     ++A+ DQA  L H
Sbjct: 3   LMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 62
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
            SN++++ PQ+ELA+ L   +F  +VFF+NTGTEANEAAIK ARK          E    
Sbjct: 63  CSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARK----YGKKKSEKKYR 118
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
            +S  NSFHGRT+G+L  T +  Y+ PFEP++PG  + E+ N+E  R+ +      AVF+
Sbjct: 119 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFL 177
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
           EPIQGE GI  ATKEFL+  R  CD+  ALLVFDEVQCG+GRTG L+A++ YG+ PD++T
Sbjct: 178 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT 237
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKL 372
            AK L GG+PIGA +V E+ A+ +  GDHG+TF G+PL C A + V+ +++   FL    
Sbjct: 238 TAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE 296
Query: 373 ARNPH--------------VKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKG 416
            +  +              V DVRG+GL+IGI+F  +VS   V   C ++ LLV+ AG  
Sbjct: 297 EKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGN- 355
Query: 417 NVVRLVPPLIISEQELDQAVEILCKTL 443
           N +R +PPL +   E+D AVE L K L
Sbjct: 356 NTIRFLPPLTVEYGEIDLAVETLKKVL 382

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score =  333 bits (853), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/387 (47%), Positives = 238/387 (61%), Gaps = 23/387 (5%)
Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           L  TY+R P     GKG  +YD +G  YLD +SGIAVN LGH     ++A+ DQA  L H
Sbjct: 15  LXNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 74
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
            SN++++ PQ ELA+ L   +F  +VFF+NTGTEANEAAIK ARK          E    
Sbjct: 75  CSNLFWNRPQXELAELLSKNTFGGKVFFANTGTEANEAAIKIARK----YGKKKSEKKYR 130
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
            +S  NSFHGRT+G+L  T +  Y+ PFEP++PG  + E+ N+E  R+        AVF+
Sbjct: 131 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKXSE-DVCAVFL 189
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
           EPIQGE GI  ATKEFL+  R  CD+  ALLVFDEVQCG GRTG L+A++ YG+ PD++T
Sbjct: 190 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDVLT 249
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF----- 367
            AK L GG+PIGA +V E+ A+ +  GDHG+TF G+PL C A + V+ +++   F     
Sbjct: 250 TAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE 308
Query: 368 -----LASKLARNPH----VKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKG 416
                L  KL         V DVRG GL IGI+F  +VS   V   C ++ LLV+ AG  
Sbjct: 309 EKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQFREEVSNREVATKCFENKLLVVPAGN- 367
Query: 417 NVVRLVPPLIISEQELDQAVEILCKTL 443
           N +R +PPL +   E+D AVE L K L
Sbjct: 368 NTIRFLPPLTVEYGEIDLAVETLKKVL 394

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score =  300 bits (769), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 163/389 (41%), Positives = 239/389 (61%), Gaps = 34/389 (8%)
Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           L+  Y R PV    GKG  LYD EG+EYLD  SGI VN+LGH      +A+ +Q   L H
Sbjct: 3   LMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLH 62
Query: 133 VSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191
           VSN+Y +  Q ELA +LV   + + +VFF+N+GTE+ EAAIK ARK+ R    D  +   
Sbjct: 63  VSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWR----DKGKNKW 118
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251
           +F+SF NSFHGRT G+L+ T +  +   FEP++PG ++ +  +I++  KL+   +TA + 
Sbjct: 119 KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDE-ETAGII 177
Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311
           +E IQGEGG+  A+++FL  L++ C +   LL+ DEVQ G+GRTG  +A++H+ + PD++
Sbjct: 178 IEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237
Query: 312 TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASK 371
            LAK L GG+PIGA L  E+VA +   G HGSTF G+PL C A   V+D++        K
Sbjct: 238 ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV-------EK 290
Query: 372 LARNPHVKD----------------VRGLGLIIGIEFDVSATPVVDACRDSGLLV-LTAG 414
           L   PHV++                V+G GL++G+E +      V    + GLL+  TAG
Sbjct: 291 LL--PHVREVGNYFKEKLKELGKGKVKGRGLMLGLELERECKDYVLKALEKGLLINCTAG 348
Query: 415 KGNVVRLVPPLIISEQELDQAVEILCKTL 443
           K  V+R +PPLII ++ +D+A+ +L + L
Sbjct: 349 K--VLRFLPPLIIQKEHIDRAISVLREIL 375

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score =  286 bits (731), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/385 (40%), Positives = 224/385 (58%), Gaps = 23/385 (5%)
Query: 71  KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
           + ++  Y  AP +   G+G +L+D +G+EY+D + GIAVNALGH   +  +A+ +QA+  
Sbjct: 12  EWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKF 71
Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
            H  N Y + P + LAK+L+  +FADRVFF N+G EANEAA+K ARKF        K   
Sbjct: 72  WHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHK--- 128
Query: 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250
           +  V+F N+FHGRT+  ++   +  Y   F P+   +    Y +I +   LI    T AV
Sbjct: 129 SGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDD-STCAV 187
Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
            VEPIQGEGG+  A+  FLQ LR+ C+   ALL+FDEVQ G+GRTG L+A+ HYG+ PD+
Sbjct: 188 IVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDL 247
Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
           +T AK L GG P+GA L TE+ A  +  G HG+T+ G+PL    A  VL+ I+ P  L  
Sbjct: 248 LTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNG 307
Query: 371 KLARNPH--------------VKDVRGLGLIIGI----EFDVSATPVVDACRDSGLLVLT 412
              R+                  +VRGLGL+IG     ++   A  +      +G++VL 
Sbjct: 308 VKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLI 367
Query: 413 AGKGNVVRLVPPLIISEQELDQAVE 437
           AG GNVVR  P L +SE+E+   ++
Sbjct: 368 AG-GNVVRFAPALNVSEEEVTTGLD 391

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score =  284 bits (726), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 154/393 (39%), Positives = 233/393 (59%), Gaps = 27/393 (6%)
Query: 71  KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
           ++++  Y  A  +   GKG +++D +G+EY+D + GIAV ALGH     ++A+  Q   L
Sbjct: 30  EVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL 89
Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ--RHSNPDSKE 188
            H SN++ + P + L ++L+  +FA+RV F N+GTEANE A K AR +   RHS   +K 
Sbjct: 90  WHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTK- 148
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
                ++F N+FHGR++  +++  +  Y   F P    +  V + ++ A  K +    T 
Sbjct: 149 ----IIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAV-KAVMDDHTC 203
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
           AV VEPIQGEGG+ +AT EFL+ LRD CD+  ALLVFDEVQCG+GRTG L+A+ HYG+ P
Sbjct: 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTP 263
Query: 309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368
           DI+T AK L GG P+ A L T+++ASA + G HGST+ G+PL C  A A  D I+ P  L
Sbjct: 264 DILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVL 323
Query: 369 AS-KLARNPHVK-------------DVRGLGLIIGIE----FDVSATPVVDACRDSGLLV 410
                 R   V+             D+RG+GL+IG E    +   A   + A  ++G++V
Sbjct: 324 QGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMV 383
Query: 411 LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           L AG  +V+R  P L++ E ++ + ++   + +
Sbjct: 384 LNAG-ADVMRFAPSLVVEEADIHEGMQRFAQAV 415

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score =  283 bits (724), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/392 (39%), Positives = 232/392 (59%), Gaps = 23/392 (5%)
Query: 69  EKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQAN 128
           E+  ++ TY R  +VL  G+G  L+D + ++YLD SSGI V ALG+  A +   +  Q +
Sbjct: 7   EQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD 66
Query: 129 VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
            L H SN+YY+      AK L   S  +RVFF+N+GTE+ E A K ARK+  +       
Sbjct: 67  KLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGV---- 122
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
              +F++F +SFHGRT+GAL+LT+ E Y+ PF+P++ GV F +Y +I +  KL+   KT 
Sbjct: 123 KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNE-KTC 181
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
           A+ +E +QGEGGI  A K+F + LR  CD+   LL+ DE+QCG GR+G  +A+EH  I P
Sbjct: 182 AIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILP 241
Query: 309 DIMTLAKPLAGGLPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367
           DI T AK L  GL +GA ++ +KVAS ++  GDHGST+ G+PLVC    AV +       
Sbjct: 242 DIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKI 301
Query: 368 LASKLARNPHV--------------KDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVL 411
           L +     P++              K  +GLG   G+  D  V    V+  C+++ LL++
Sbjct: 302 LENVNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSLDKSVKVAKVIQKCQENALLLI 361
Query: 412 TAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           + G+ N +R +PPLI+ ++ +D+  E L K L
Sbjct: 362 SCGE-NDLRFLPPLILQKEHIDEXSEKLRKAL 392

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score =  282 bits (721), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 154/396 (38%), Positives = 240/396 (60%), Gaps = 26/396 (6%)
Query: 63  KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
           + ++EAEK L  G YN+  +++  G+G +++DAEG EY+D   G  V  LGHG+ + ++A
Sbjct: 10  RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEA 69
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVAC--SFADRVFFSNTGTEANEAAIKFARKFQR 180
           V  QA  L  +     +  + E  + L A      +RVF  N+GTEANEAA+KFAR    
Sbjct: 70  VKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA--- 126
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
           H+         +FV+    F GRTMG+L++T +  YR PF P++  V F+ Y ++EA ++
Sbjct: 127 HTG------RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR 180
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
            +   +TAAV +EP+QGEGG+  AT EFL+  R+   + GALL+ DE+Q G+GRTG  +A
Sbjct: 181 AVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 239
Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
            EH+GI PDI+TLAK L GG+P+G A++ E+VA ++  G HG+TF G+PL   A +A + 
Sbjct: 240 FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIR 299
Query: 361 KISN-----------PAFLAS-KLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC-RDSG 407
            +             P F+   +   +P +++VRG+GL++G+E    A P +    ++  
Sbjct: 300 YLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHR 359
Query: 408 LLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           +L L AG   V+R +PPL+I +++L++ VE +   L
Sbjct: 360 VLALQAGP-TVIRFLPPLVIEKEDLERVVEAVRAVL 394

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score =  227 bits (579), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 204/388 (52%), Gaps = 16/388 (4%)
Query: 63  KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
           K+++E         Y+  P+V++  +G  + D EG  Y+DL S  +    GH     I A
Sbjct: 1   KDIIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINA 60
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
           ++DQAN +T  S  ++S       +++   +  + V   NTG EA E AIK AR++    
Sbjct: 61  LIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDV 120
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
                  A E +   ++FHGRTMGA++++S E Y+  F P++PG+  + YG++EA +  I
Sbjct: 121 KKVEANRA-EIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI 179
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
            P  TAA  +EPIQGE GI      FL+   + C     L V DE+Q GLGRTG ++A +
Sbjct: 180 TP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACD 238
Query: 303 HYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
              + PD+  L   L GG+ PI  A     +      G HGSTF G+PL C  +IA L+ 
Sbjct: 239 WDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV 298
Query: 362 ISNPAF------LASKLA------RNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLL 409
           +           L  KL        NP + +VRG GL IGIE +  A P  +  + +GLL
Sbjct: 299 LEEEKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLFIGIELNEPARPYCEQLKAAGLL 358
Query: 410 VLTAGKGNVVRLVPPLIISEQELDQAVE 437
                + NV+R+ PPL+ISE++L+ A +
Sbjct: 359 CKETHE-NVIRIAPPLVISEEDLEWAFQ 385

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score =  227 bits (579), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 153/407 (37%), Positives = 217/407 (53%), Gaps = 54/407 (13%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-NMYY 138
           P+V+  G+G  +YD +G +YLD +SGI VN LG     + IK  ++Q   L H + N +Y
Sbjct: 25  PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFY 84
Query: 139 SIPQIELAKRLVACS---FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
           +IPQ+ELAK+LV  S   F  +VFFSN+GTEA EA+IK  +   R             ++
Sbjct: 85  NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKY----------IIA 134
Query: 196 FTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGN-------------------- 234
           F   FHGRT G+++LT SK   RS   P MPGV  V Y N                    
Sbjct: 135 FLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNR 194
Query: 235 -IEATR-----KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV 288
            IE         L+ P + A +F EPIQGEGG     K F   L+      G LLV DEV
Sbjct: 195 VIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV 254
Query: 289 QCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAG 347
           Q GLGRTG L+A E++   PD++TLAK L GG +PIGA +  + +      G H +TF G
Sbjct: 255 QMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL--DFKPGMHSNTFGG 312
Query: 348 SPLVCNAAIAVLDKISNPAFLASKLAR------NPHVKDVRGLGLIIGIEFDVSAT--PV 399
           + L C     V+D + +     +++ +           DVRG+GL  G+E++       +
Sbjct: 313 NALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGLADDVRGIGLAWGLEYNEKKVRDRI 372
Query: 400 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
           +      GLL+L AG+ + +R++PPL+ISE+E  Q ++IL K + V+
Sbjct: 373 IGESFKRGLLLLPAGR-SAIRVIPPLVISEEEAKQGLDILKKVIKVV 418

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score =  224 bits (572), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 140/409 (34%), Positives = 212/409 (51%), Gaps = 22/409 (5%)
Query: 60  RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +++++ M  E       Y+  PVVL  GKG  +YD E R Y D  S  +    GH   D 
Sbjct: 8   KSSQDYMNNELTYGAHNYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDI 67
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKF 178
           + A+++QA  LT  S  ++S   + + +R +   F  D+V   NTG EA+E A K  RK+
Sbjct: 68  LNAMINQAKKLTICSRAFFS-DSLGVCERYLTNLFGYDKVLMMNTGAEASETAYKLCRKW 126
Query: 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT 238
             +      E + + +   N+F GRT+G ++ ++ +  ++ F P +P    V Y ++EA 
Sbjct: 127 G-YEVKKIPENSAKIIVCNNNFSGRTLGCVSASTDKKCKNNFGPFVPNFLKVPYDDLEAL 185
Query: 239 RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
            K +Q     A  VEP+QGE G+   +  +   +   C     L V DEVQ GLGRTG L
Sbjct: 186 EKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKL 245
Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPL---VCNA 354
               HYG+ PD++ L K L+GG  PI A L  + V   +  G+HGST+ G+PL   +C  
Sbjct: 246 LCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVE 305
Query: 355 AIAVL---------DKISNPAF--LASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC 403
           A+ VL         DK+  P    L  +L  +  V++VRG GL+  IEF      V D C
Sbjct: 306 ALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEFKNDLVNVWDIC 365
Query: 404 ---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449
              +++GL+  +      VRL PPL I++++LD+  EI+ KT+   D N
Sbjct: 366 LKFKENGLITRSV-HDKTVRLTPPLCITKEQLDECTEIIVKTVKFFDDN 413

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/404 (34%), Positives = 205/404 (50%), Gaps = 20/404 (4%)
Query: 63  KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
           ++ +  E K     Y+  PVVL   KG  +YD   + Y D  S  +    GH   + + A
Sbjct: 30  EDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNA 89
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
           +++QA  LT  S  ++S+P     + L      D+V   NTG EANE A K  RK+  + 
Sbjct: 90  MINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG-YE 148
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
                E   + V   N+F GRT+G ++ ++ +   S F P  P  + V Y ++EA  + +
Sbjct: 149 VKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEEL 208
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
           +     A  VEPIQGE G+   +  +LQ + D C     L V DEVQ GLGRTG L    
Sbjct: 209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVH 268
Query: 303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPL---VCNAAIAV 358
           HY + PD++ L K L+GG  PI A L  + +   I  G+HGST+ G+PL   +C  A+ V
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNV 328
Query: 359 L---------DKISNPAF--LASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC---R 404
           L         +K+  P    L  +L  +  V+DVRG GL+  IEF      V+D C   +
Sbjct: 329 LINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK 388
Query: 405 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448
           ++GL+         +RL PPL I++++LD+  EI+ KT+   D 
Sbjct: 389 ENGLITRDV-HDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDE 431

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score =  210 bits (535), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 143/428 (33%), Positives = 214/428 (50%), Gaps = 54/428 (12%)
Query: 61  NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +NKE+M+   + +  G     P+     + C+++D EGREYLD + GIAV   GH     
Sbjct: 3   SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
           + AV  Q   L+H      +  P +EL + +   V   FA +     TG+EA E A+K A
Sbjct: 63  VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
           R   + S           ++F+ ++HGRT   LALT K +  S    +MPG  +      
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
                 E   I +  ++ +    P   AA+ +EP+QGEGG Y+++  F+Q LR  CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
            +L+ DEVQ G GRTG L+A E  G+ PD+ T AK +AGG P+       +V  A+  G 
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAF------LASKLA--------RNPHVKDVRGLGL 386
            G T+AG+P+ C AA+ VL              L  KL         ++P + DVRGLG 
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 387 IIGIEF---------DVSAT-PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435
           +I IE          D   T  +V   RD GL++L+ G   NV+R++ PL I + ++ Q 
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 436 VEILCKTL 443
           +EI+ +  
Sbjct: 414 LEIISQCF 421

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score =  208 bits (530), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 142/428 (33%), Positives = 213/428 (49%), Gaps = 54/428 (12%)
Query: 61  NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +NKE+M+   + +  G     P+     + C+++D EGREYLD + GIAV   GH     
Sbjct: 3   SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
           + AV  Q   L+H      +  P +EL + +   V   FA +     TG+EA E A+K A
Sbjct: 63  VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
           R   + S           ++F+ ++HGRT   LALT K +  S    +MPG  +      
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
                 E   I +  ++ +    P   AA+ +EP+QGEGG Y+++  F+Q LR  CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
            +L+ DE Q G GRTG L+A E  G+ PD+ T AK +AGG P+       +V  A+  G 
Sbjct: 234 IMLIADEAQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAF------LASKLA--------RNPHVKDVRGLGL 386
            G T+AG+P+ C AA+ VL              L  KL         ++P + DVRGLG 
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 387 IIGIEF---------DVSAT-PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435
           +I IE          D   T  +V   RD GL++L+ G   NV+R++ PL I + ++ Q 
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 436 VEILCKTL 443
           +EI+ +  
Sbjct: 414 LEIISQCF 421

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 142/428 (33%), Positives = 213/428 (49%), Gaps = 54/428 (12%)
Query: 61  NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +NKE+M+   + +  G     P+     + C+++D EGREYLD + GIAV   GH     
Sbjct: 3   SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
           + AV  Q   L+H      +  P +EL + +   V   FA +     TG+EA E A+K A
Sbjct: 63  VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
           R   + S           ++F+ ++HGRT   LALT K +  S    +MPG  +      
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
                 E   I +  ++ +    P   AA+ +EP+QG GG Y+++  F+Q LR  CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
            +L+ DEVQ G GRTG L+A E  G+ PD+ T AK +AGG P+       +V  A+  G 
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAF------LASKLA--------RNPHVKDVRGLGL 386
            G T+AG+P+ C AA+ VL              L  KL         ++P + DVRGLG 
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 387 IIGIEF---------DVSAT-PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435
           +I IE          D   T  +V   RD GL++L+ G   NV+R++ PL I + ++ Q 
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 436 VEILCKTL 443
           +EI+ +  
Sbjct: 414 LEIISQCF 421

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score =  207 bits (528), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 142/428 (33%), Positives = 213/428 (49%), Gaps = 54/428 (12%)
Query: 61  NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +NKE+M+   + +  G     P+     + C+++D EGREYLD + G AV   GH     
Sbjct: 3   SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
           + AV  Q   L+H      +  P +EL + +   V   FA +     TG+EA E A+K A
Sbjct: 63  VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
           R   + S           ++F+ ++HGRT   LALT K +  S    +MPG  +      
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
                 E   I +  ++ +    P   AA+ +EP+QGEGG Y+++  F+Q LR  CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
            +L+ DEVQ G GRTG L+A E  G+ PD+ T AK +AGG P+       +V  A+  G 
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAF------LASKLA--------RNPHVKDVRGLGL 386
            G T+AG+P+ C AA+ VL              L  KL         ++P + DVRGLG 
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 387 IIGIEF---------DVSAT-PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435
           +I IE          D   T  +V   RD GL++L+ G   NV+R++ PL I + ++ Q 
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 436 VEILCKTL 443
           +EI+ +  
Sbjct: 414 LEIISQCF 421

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score =  207 bits (527), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 200/400 (50%), Gaps = 19/400 (4%)
Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
            + ++ E E K     Y+  PV L  GKG  L+D EGR+Y D  S I+    GH     +
Sbjct: 39  TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 98
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
            A+  Q + LT  S  +Y+    E  + +       +V   NTG EA E A K ARK+  
Sbjct: 99  NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 158
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
                 K  A + V    +F GRT+ A++ ++       F P MPG + + Y ++ A  +
Sbjct: 159 TVKGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
            +Q    AA  VEPIQGE G+      +L  +R+ C     L + DE+Q GL RTG   A
Sbjct: 218 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 277
Query: 301 HEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
            ++  + PDI+ L K L+GGL P+ A L  + +   I  G+HGST+ G+PL C  AIA L
Sbjct: 278 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAAL 337
Query: 360 DKI--SNPAFLASKLA---RNPHVK-------DVRGLGLIIGIEF----DVSATPVVDAC 403
           + +   N A  A KL    RN  +K        VRG GL+  I      D  A  V    
Sbjct: 338 EVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRL 397
Query: 404 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           RD+GLL      G+++R  PPL+I E EL +++EI+ KT+
Sbjct: 398 RDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score =  206 bits (523), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/401 (35%), Positives = 203/401 (50%), Gaps = 21/401 (5%)
Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADW 119
            + ++ E E K     Y+  PV L  GKG  L+D EGR+Y D LSS  AVN  GH     
Sbjct: 39  TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQ-GHCHPKI 97
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
           + A+  Q + LT  S  +Y+    E  + +       +V   NTG EA E A K ARK+ 
Sbjct: 98  VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
                  K  A + V    +F GRT+ A++ ++       F P MPG + + Y ++ A  
Sbjct: 158 YTVKGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALE 216
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
           + +Q    AA  VEPIQGE G+      +L  +R+ C     L + DE+Q GL RTG   
Sbjct: 217 RALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 276
Query: 300 AHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAV 358
           A ++  + PDI+ L K L+GGL P+ A L  + +   I  G+HGST+ G+PL C  AIA 
Sbjct: 277 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAA 336
Query: 359 LDKI--SNPAFLASKLA---RNPHVK-------DVRGLGLIIGIEF----DVSATPVVDA 402
           L+ +   N A  A KL    RN  +K        VRG GL+  I      D  A  V   
Sbjct: 337 LEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLR 396
Query: 403 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
            RD+GLL      G+++R  PPL+I E EL +++EI+ KT+
Sbjct: 397 LRDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/398 (36%), Positives = 202/398 (50%), Gaps = 21/398 (5%)
Query: 64  EVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADWIKA 122
           ++ E E K     Y+  PV L  GKG  L+D EGR+Y D LSS  AVN  GH     + A
Sbjct: 5   DIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQ-GHCHPKIVNA 63
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
           +  Q + LT  S  +Y+    E  + +       +V   NTG EA E A K ARK+    
Sbjct: 64  LKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTV 123
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
               K  A + V    +F GRT+ A++ ++       F P MPG + + Y ++ A  + +
Sbjct: 124 KGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERAL 182
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
           Q    AA  VEPIQGE G+      +L  +R+ C     L + DE+Q GL RTG   A +
Sbjct: 183 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 242
Query: 303 HYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
           +  + PDI+ L K L+GGL P+ A L  + +   I  G+HGST+ G+PL C  AIA L+ 
Sbjct: 243 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 302
Query: 362 I--SNPAFLASKLA---RNPHVK-------DVRGLGLIIGIEF----DVSATPVVDACRD 405
           +   N A  A KL    RN  +K        VRG GL+  I      D  A  V    RD
Sbjct: 303 LEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRD 362
Query: 406 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           +GLL      G+++R  PPL+I E EL +++EI+ KT+
Sbjct: 363 NGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 399

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score =  200 bits (509), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/400 (34%), Positives = 198/400 (49%), Gaps = 19/400 (4%)
Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
            + ++ E E K      +  PV L  GKG  L+D EGR+Y D  S I+    GH     +
Sbjct: 39  TSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 98
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
            A+  Q + LT  S  +Y+    E  + +       +V   NTG EA E A K ARK+  
Sbjct: 99  NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 158
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
                 K  A + V    +F GRT+ A++ ++       F P MPG + + Y ++ A  +
Sbjct: 159 TVKGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
            +Q    AA  VEPIQGE G+      +L  +R+ C     L + DE+Q GL RTG   A
Sbjct: 218 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 277
Query: 301 HEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
            ++  + PDI+ L K L+GGL P+ A L  + +   I  G+H ST+ G+PL C  AIA L
Sbjct: 278 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAAL 337
Query: 360 DKI--SNPAFLASKLA---RNPHVK-------DVRGLGLIIGIEF----DVSATPVVDAC 403
           + +   N A  A KL    RN  +K        VRG GL+  I      D  A  V    
Sbjct: 338 EVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRL 397
Query: 404 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           RD+GLL      G+++R  PPL+I E EL +++EI+ KT+
Sbjct: 398 RDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score =  177 bits (450), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 132/414 (31%), Positives = 189/414 (45%), Gaps = 60/414 (14%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           PV +    G  + DA+G   +DL SGIAV  +G+     + AV DQ    TH   M    
Sbjct: 61  PVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQFTHTCFMVTPY 120
Query: 141 PQI----ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
            Q     E   R+   S   R    N+G EA E +IK AR   R             V+F
Sbjct: 121 EQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTRKQ---------AVVAF 171
Query: 197 TNSFHGRTMGALALTSKEH-YRSPFEPVMPGV----------------NFVEYGNIEATR 239
             ++HGRT   +ALT+K   Y+S F P  P +                +    G + A R
Sbjct: 172 DYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAER 231
Query: 240 ------KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
                 K I     AAV +EPI GEGG       FL  L+  C D   + + DEVQ G  
Sbjct: 232 AINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFA 291
Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCN 353
           RTG ++A +H  + PD++  A  +A G P+ A     ++  A +    G TF G+P+ C 
Sbjct: 292 RTGAMFACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDAPHTSGLGGTFGGNPVACA 351
Query: 354 AAIAVLDKISNPAFL--ASKLAR------------NPHVKDVRGLGLIIGIEFDVSATPV 399
           AA+A ++ I     +  A ++ R            +  + DVRG G +I +E   S T  
Sbjct: 352 AALATIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDVRGRGAMIAMELVKSGTAE 411
Query: 400 VDAC---------RDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 443
            DA            +G++VLT G  GNV+RL+PPL IS++ L + ++ILC+ L
Sbjct: 412 PDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDELLSEGLDILCQIL 465

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score =  172 bits (435), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 187/405 (46%), Gaps = 54/405 (13%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM---Y 137
           PV + +  G  L DA+G + +D  SGIAV  +G+     + AV  Q    TH   M   Y
Sbjct: 51  PVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAAFTHTCFMVTPY 110
Query: 138 YSIPQI-ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
               ++ E   RL       R    N+G EA E A+K AR + R             V F
Sbjct: 111 EGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENAVKIARAYTRRQ---------AVVVF 161
Query: 197 TNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEYG----------------NIEATR 239
            +++HGRT   +A+T+K   Y+  F P    V  V                    ++   
Sbjct: 162 DHAYHGRTNLTMAMTAKNQPYKHGFGPFANEVYRVPTSYPFRDGETDGAAAAAHALDLIN 221
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
           K +     AAV +EP+ GEGG       FL  L+  C D GA+ V DEVQ G  RTG L+
Sbjct: 222 KQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGALF 281
Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
           A EH  + PD++  AK +AGGLP+ A     ++      G  G T+ G+PL C AA+AV+
Sbjct: 282 ACEHENVVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVI 341
Query: 360 DKISNPAFLA----------SKL----ARNPHVKDVRGLGLIIGIEFDVSATP------- 398
           D I     +A          S+L    A +P + +VRG G +I +E     T        
Sbjct: 342 DTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVELVKPGTTEPDADLT 401
Query: 399 --VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILC 440
             V  A    GL+VLT G  GNV+R +PPL + +  LD+ ++IL 
Sbjct: 402 KRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDILA 446

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 192/420 (45%), Gaps = 60/420 (14%)
Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
           G     PV      G  + D +G   +DL SGIAV  +G+     ++AV  Q    TH  
Sbjct: 38  GVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTC 97
Query: 135 NMYYS----IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
            M       +   E   RL       R    N+G+EA E A+K AR         + +PA
Sbjct: 98  FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH-------THKPA 150
Query: 191 TEFVSFTNSFHGRTMGALALTSK-------------EHYRSP----FEPVMPGVNFVEYG 233
              V+F +++HGRT   +ALT+K             E YR+P    F     G      G
Sbjct: 151 V--VAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDG 208
Query: 234 NIEATR------KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
            + A R      K I     AAV +EPIQGEGG       FL  L D C     + + DE
Sbjct: 209 ELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADE 268
Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
           VQ G  RTG ++A EH GI PD++  A  +AGGLP+ A     ++  + +    G T+ G
Sbjct: 269 VQTGFARTGAMFACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGG 328
Query: 348 SPLVCNAAIAVLDKISNPAFLA----------SKLAR----NPHVKDVRGLGLIIGIEFD 393
           +P+ C AA+A ++ I +   +A           +L R    +  + DVRG G +I +E  
Sbjct: 329 NPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELV 388
Query: 394 VSATPVVDA---------CRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 443
            + T   DA            +G++VL+ G  GNVVR +PPL I +  L++ +++L + L
Sbjct: 389 KAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 191/409 (46%), Gaps = 61/409 (14%)
Query: 82  VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141
            V A  +GC + D +G+ YLD  SG+     G+G  +  +A   Q   L++        P
Sbjct: 33  TVGAKAEGCWVEDIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPXSQSHEP 92
Query: 142 QIELAKRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF 200
            I+LA++L      + V FFSN+G+EANE A K AR++        +    +F S    +
Sbjct: 93  AIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHR---YKFXSRYRGY 149
Query: 201 HGRTMGALALTSKEHYRSPFEPV--------------MPGVNFVEYGNIEATRKL----- 241
           HG T    A T +   R  +EP                PG+      ++E  +++     
Sbjct: 150 HGNTXATXAATGQAQRRYQYEPFASGFLHVTPPDCYRXPGIERENIYDVECVKEVDRVXT 209
Query: 242 IQPGKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
            +  +T A F+ EPI   GGI  A +++ + + + C   GALL+ DEV CG GRTG  + 
Sbjct: 210 WELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFG 269
Query: 301 HEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN------YGDHGSTFAGSPLVCN 353
             +Y + PDI+T AK +    LP+ A  V  ++  A        +  H +TF G+P  C 
Sbjct: 270 FXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACA 329
Query: 354 AAIAVLDKISNPAF--------------LASKLARNPHVKDVRGLGLIIGIEF------- 392
            A+  L+ I N                 L  ++  +P V D+RG GL++GIE        
Sbjct: 330 LALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK 389
Query: 393 ----DVSATPVVDACRDSGLLV-----LTAGKGNVVRLVPPLIISEQEL 432
               +     VV+AC++ GL++      TAG  N++ L PPL+IS +E+
Sbjct: 390 EPIDNDKIASVVNACKEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEI 438

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 205/415 (49%), Gaps = 55/415 (13%)
Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
           G  + APV      G  + DA+G  ++DL +GIAV  +G        A+ DQA   TH  
Sbjct: 41  GVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTC 100
Query: 135 NMYYSIPQ-IELAKRLVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
            M     Q +++A+ L A +  D   R    N+G EA E AIK AR         +  PA
Sbjct: 101 FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARL-------ATGRPA 153
Query: 191 TEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFV--------EYG--NIEATR 239
              V+F N++HGRT   +ALT+K   Y+S F P  P V  +        E G    EA R
Sbjct: 154 --VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAAR 211
Query: 240 KLIQPGKT-------AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
           + I   +T       AA+ +EPIQGEGG       FL  L     + G + + DEVQ G 
Sbjct: 212 RAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF 271
Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352
            RTG  +A EH GI PDI+T+A  +AGG+P+ A     ++  A+  G  G T+ G+P+ C
Sbjct: 272 ARTGAWFASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTC 331
Query: 353 NAAIA---VLDKISNP-------AFLASKLARNPH----VKDVRGLGLIIGIEF------ 392
            AA+A   V+ ++  P       A + S+L+        + +VRG G ++ IE       
Sbjct: 332 AAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTL 391
Query: 393 --DVSATPVVDA-CRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 443
             D + T  + A     G+L+LT G  GNV+RL+PPL+I +  LD+ +  L   +
Sbjct: 392 EPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDII 446

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 191/423 (45%), Gaps = 69/423 (16%)
Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
           GT+   P+++   KG  +YDA+GR  LD +SG     LGH   + +  + + A  L H+ 
Sbjct: 20  GTFE--PMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDHLF 77
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
           +   S P ++LA RL  +     DR    +TG E+NEAAI+ A+               E
Sbjct: 78  SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 128
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
            V F  S+HG T                   +G+ A+ +   YR  FE       +  ++
Sbjct: 129 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 188
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
           Y      R+    G  AA   EPI   GGI      ++  L+  C+  G LL+ DE Q G
Sbjct: 189 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 246
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
           +GRTG ++A +  G+ PDI+TL+K L  GLP+ AA+VT    E+ A  + Y  + +T   
Sbjct: 247 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 304
Query: 348 SPLVCNAAIAVLDKISNPAFLASK--------------LARNPHVKDVRGLGLIIGIEF- 392
            PL     + VLD +     +A                + R   + DVRG GL++G+E  
Sbjct: 305 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 364
Query: 393 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
                    D     +   C + GL   +V   G G V R+ PPL +SE E+D  + +L 
Sbjct: 365 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 424
Query: 441 KTL 443
           + +
Sbjct: 425 QAI 427

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score =  157 bits (398), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 191/423 (45%), Gaps = 69/423 (16%)
Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
           GT+   P+++   KG  +YDA+GR  LD +SG     LGH   + +  + + A  L H+ 
Sbjct: 22  GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 79
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
           +   S P ++LA RL  +     DR    +TG E+NEAAI+ A+               E
Sbjct: 80  SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 130
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
            V F  S+HG T                   +G+ A+ +   YR  FE       +  ++
Sbjct: 131 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 190
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
           Y      R+    G  AA   EPI   GGI      ++  L+  C+  G LL+ DE Q G
Sbjct: 191 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 248
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
           +GRTG ++A +  G+ PDI+TL+K L  GLP+ AA+VT    E+ A  + Y  + +T   
Sbjct: 249 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 306
Query: 348 SPLVCNAAIAVLDKISNPAFLASK--------------LARNPHVKDVRGLGLIIGIEF- 392
            PL     + VLD +     +A                + R   + DVRG GL++G+E  
Sbjct: 307 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 366
Query: 393 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
                    D     +   C + GL   +V   G G V R+ PPL +SE E+D  + +L 
Sbjct: 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 426
Query: 441 KTL 443
           + +
Sbjct: 427 QAI 429

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 191/423 (45%), Gaps = 69/423 (16%)
Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
           GT+   P+++   KG  +YDA+GR  LD +SG     LGH   + +  + + A  L H+ 
Sbjct: 22  GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 79
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
           +   S P ++LA RL  +     DR    +TG E+NEAAI+ A+               E
Sbjct: 80  SGMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 130
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
            V F  S+HG T                   +G+ A+ +   YR  FE       +  ++
Sbjct: 131 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 190
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
           Y      R+    G  AA   EPI   GGI      ++  L+  C+  G LL+ DE Q G
Sbjct: 191 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 248
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
           +GRTG ++A +  G+ PDI+TL+K L  GLP+ AA+VT    E+ A  + Y  + +T   
Sbjct: 249 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 306
Query: 348 SPLVCNAAIAVLDKISNPAFLASK--------------LARNPHVKDVRGLGLIIGIEF- 392
            PL     + VLD +     +A                + R   + DVRG GL++G+E  
Sbjct: 307 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 366
Query: 393 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
                    D     +   C + GL   +V   G G V R+ PPL +SE E+D  + +L 
Sbjct: 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 426
Query: 441 KTL 443
           + +
Sbjct: 427 QAI 429

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 191/423 (45%), Gaps = 69/423 (16%)
Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
           GT+   P+++   KG  +YDA+GR  LD +SG     LGH   + +  + + A  L H+ 
Sbjct: 21  GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 78
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
           +   S P ++LA RL  +     DR    +TG E+NEAAI+ A+               E
Sbjct: 79  SGMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 129
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
            V F  S+HG T                   +G+ A+ +   YR  FE       +  ++
Sbjct: 130 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 189
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
           Y      R+    G  AA   EPI   GGI      ++  L+  C+  G LL+ DE Q G
Sbjct: 190 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 247
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
           +GRTG ++A +  G+ PDI+TL+K L  GLP+ AA+VT    E+ A  + Y  + +T   
Sbjct: 248 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 305
Query: 348 SPLVCNAAIAVLDKISNPAFLASK--------------LARNPHVKDVRGLGLIIGIEF- 392
            PL     + VLD +     +A                + R   + DVRG GL++G+E  
Sbjct: 306 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 365
Query: 393 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
                    D     +   C + GL   +V   G G V R+ PPL +SE E+D  + +L 
Sbjct: 366 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 425
Query: 441 KTL 443
           + +
Sbjct: 426 QAI 428

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  155 bits (391), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 200/424 (47%), Gaps = 63/424 (14%)
Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
           Y+  P+++ SG G K+ D  G+EY D  S + +N  GH   +   A+  Q   + H + +
Sbjct: 23  YDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL 82
Query: 137 -YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
              ++P  +LA+ L+  S     RVF+S++G EA E A+K A ++ ++     K+   +F
Sbjct: 83  GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ---KF 139
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGNIEATR------ 239
           ++  N +HG T+GA+++ S E +   + P+M        P V   E G+ +  R      
Sbjct: 140 IAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRE 199
Query: 240 --KLIQPG--KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
             +L++    + AA+ +E  +QG  G+    + +L  +R+ C     L++ DEV  G GR
Sbjct: 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGR 259
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTF 345
           TG ++A EH  + PD+M   K + GG LPI     TE +  A  Y D        HG ++
Sbjct: 260 TGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF-YDDYENLKTFFHGHSY 318
Query: 346 AGSPLVCNAAI-------------AVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEF 392
            G+ L C  A+              V +K     FL   L   PHV D+R LG + G E 
Sbjct: 319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAEL 378
Query: 393 DVSAT-------------PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
             S                V    R+ G+  LT   G+V+  +PPL  + +EL + V I+
Sbjct: 379 VRSKETKEPYPADRRIGYKVSLKMRELGM--LTRPLGDVIAFLPPLASTAEELSEMVAIM 436
Query: 440 CKTL 443
            + +
Sbjct: 437 KQAI 440

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  155 bits (391), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 200/424 (47%), Gaps = 63/424 (14%)
Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
           Y+  P+++ SG G K+ D  G+EY D  S + +N  GH   +   A+  Q   + H + +
Sbjct: 23  YDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL 82
Query: 137 -YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
              ++P  +LA+ L+  S     RVF+S++G EA E A+K A ++ ++     K+   +F
Sbjct: 83  GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ---KF 139
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGNIEATR------ 239
           ++  N +HG T+GA+++ S E +   + P+M        P V   E G+ +  R      
Sbjct: 140 IAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRE 199
Query: 240 --KLIQPG--KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
             +L++    + AA+ +E  +QG  G+    + +L  +R+ C     L++ DEV  G GR
Sbjct: 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGR 259
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTF 345
           TG ++A EH  + PD+M   K + GG LPI     TE +  A  Y D        HG ++
Sbjct: 260 TGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF-YDDYENLKTFFHGHSY 318
Query: 346 AGSPLVCNAAI-------------AVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEF 392
            G+ L C  A+              V +K     FL   L   PHV D+R LG + G E 
Sbjct: 319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAEL 378
Query: 393 DVSAT-------------PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
             S                V    R+ G+  LT   G+V+  +PPL  + +EL + V I+
Sbjct: 379 VRSKETKEPYPADRRIGYKVSLKMRELGM--LTRPLGDVIAFLPPLASTAEELSEMVAIM 436
Query: 440 CKTL 443
            + +
Sbjct: 437 KQAI 440

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 137/421 (32%), Positives = 204/421 (48%), Gaps = 61/421 (14%)
Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
           G  +  PV +    G  + D +G  ++DL SGIAV ++G  D   + AV + A   TH  
Sbjct: 41  GVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTC 100
Query: 135 NMYYS----IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
            M       +   E   RL     A R    N+G EA E A+K AR     +  D+    
Sbjct: 101 FMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVAR---LATGRDA---- 153
Query: 191 TEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFV-----------EYGNIEAT 238
              V+F +++HGRT   +ALT+K   Y++ F P  P V  +           E    EA 
Sbjct: 154 --VVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAA 211
Query: 239 RKLI-----QPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
           ++ I     Q G  + AA+ +EPIQGEGG     + FL  L +   + G + + DEVQ G
Sbjct: 212 KRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSG 271
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLV 351
             RTG  +A +H G+ PDI+T+AK +AGGLP+ A      +  A++ G  G T+ G+P+ 
Sbjct: 272 FCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVA 331
Query: 352 CNAAIAVLDKISNPAF-----------------LASKLAR--NPHVKDVRGLGLIIGIEF 392
           C AA+A +D +                      LA++L+      V D+RG G ++ IE 
Sbjct: 332 CAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIEL 391
Query: 393 --DVSATP-------VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKT 442
               S  P       V  AC   G+++LT G  GNV+RL+PPL+IS++ L   +E+L   
Sbjct: 392 VQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAA 451
Query: 443 L 443
           +
Sbjct: 452 I 452

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 191/416 (45%), Gaps = 59/416 (14%)
Query: 83  VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142
           V+  G+G  L+D+EG + +D  +G+    +G+G  D+ +A   Q   L   +  + +   
Sbjct: 35  VMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHP 94
Query: 143 --IELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
             +EL+  L   + A  DRVF++N+G+E+ +  I+  R   R+ +   K      +   N
Sbjct: 95  AVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVR---RYWDVQGKPEKKTLIGRWN 151
Query: 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE---------------YGNIEA---TRK 240
            +HG T+G  +L   ++     +  +PG+  +E               +G + A     K
Sbjct: 152 GYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEK 211
Query: 241 LIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
           +++ G  K AA   EPIQG GG+      +   +   C     LLV DEV CG GRTG  
Sbjct: 212 ILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEW 271
Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG---DHGSTFAGSPLVCNA 354
           + H+H+G  PD+ T AK L+ G LPIGA  V ++VA  +  G   +HG T++G P+    
Sbjct: 272 FGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331
Query: 355 AIAVLDKISNPAFLA---------------SKLARNPHVKDVRGLGLIIGI--------- 390
           A A +  + +   +                   +R  HV DVRG+G++            
Sbjct: 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR 391
Query: 391 EFDVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           E       +   CRD      L++ A   ++V   PPL+++  E+D+ + +  + L
Sbjct: 392 ELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVS-APPLVMTRAEVDEMLAVAERCL 446

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 196/413 (47%), Gaps = 55/413 (13%)
Query: 83  VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS--I 140
           V+   +G  L D+EG E LD  +G+    +G+G  +  +    Q   L + +  + +  +
Sbjct: 40  VITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHV 99
Query: 141 PQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
           P I LA++L   +  D   VFF+  G+EAN+  I+  R + ++     K   T  +S  N
Sbjct: 100 PAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEK---TVIISRKN 156
Query: 199 SFHGRTMGALAL--TSKEHYRSPFEPVMPGVN----FVEYGNI-----------EATRKL 241
           ++HG T+ + AL   +  H +S   P +  +N    + E G++           E    +
Sbjct: 157 AYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAI 216
Query: 242 IQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
           ++ G  + AA   EP+QG GG+  A   +   ++  CD    LL+ DEV CG GRTG  +
Sbjct: 217 LELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF 276
Query: 300 AHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAI 356
             +  GI P IMT+AK L+ G  PIG ++V ++VA  I   +  HG T++G P+    A+
Sbjct: 277 GTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVAL 336
Query: 357 A---------VLDKISNPA--FLASK---LARNPHVKDVRGLGLIIGI----------EF 392
                     +LD + N A  +L  K   L  +P V + + +G++  I          +F
Sbjct: 337 ENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKF 396
Query: 393 DVSATPVVDACRDSGLL--VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
                 +   CR+      ++    G+ + + PPL+I+  E+D+    + K+L
Sbjct: 397 ASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSL 449

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 195/400 (48%), Gaps = 61/400 (15%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           PVV  S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV  M+  I
Sbjct: 28  PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
              P IEL ++LVA +    + VF +++G+ A E A+K A ++ +       E    F++
Sbjct: 84  THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
           F N +HG T GA+++   ++   S ++  +P   F                 V +  + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
             +     + AAV +EPI QG GG+     E+L+ +R  CD  G LL+ DE+  G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
            L+A EH  I PDI+ L K L GG + + A L T +VA  I+ G+     HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIEFDVSAT 397
            C AA A L  + +  +          L  +L  AR+   V DVR LG I  +E   +  
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVE---TTH 372
Query: 398 PVVDACRDSGLL---VLTAGKGNVVRLVPPLIISEQELDQ 434
           PV  A      +   V  A  G ++ L+PP II  Q+L +
Sbjct: 373 PVNMAALQKFFVEQGVWIAPFGKLIYLMPPYIILPQQLQR 412

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score =  132 bits (331), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 196/399 (49%), Gaps = 59/399 (14%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           PVV  S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV  M+  I
Sbjct: 28  PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
              P IEL ++LVA +    + VF +++G+ A E A+K A ++ +       E    F++
Sbjct: 84  THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
           F N +HG T GA+++   ++   S ++  +P   F                 V +  + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
             +     + AAV +EPI QG GG+     E+L+ +R  CD  G LL+ DE+  G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
            L+A EH  I PDI+ L K L GG + + A L T +VA  I+ G+     HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
            C AA A L  + +  +          L  +L  AR+   V DVR LG I  +E    V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
              +     + G+ +   GK  ++ L+PP II  Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score =  131 bits (329), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 198/400 (49%), Gaps = 61/400 (15%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           PVV  S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV  M+  I
Sbjct: 28  PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGEI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSK-EPATEFV 194
              P IEL ++LVA +    + VF +++G+ A E A+K A ++      D+K E    F+
Sbjct: 84  THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW-----DAKGEARDRFL 138
Query: 195 SFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIE 236
           +F N +HG T GA+++   ++   S ++  +P   F                 V +  + 
Sbjct: 139 TFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLM 198
Query: 237 ATRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
           A  +     + AAV +EPI QG GG+     E+L+ +R  CD  G LL+ DE+  G GRT
Sbjct: 199 AAHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSP 349
           G L+A EH  I PDI+ L K L GG + + A L T +VA  I+ G+     HG TF G+P
Sbjct: 255 GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNP 314
Query: 350 LVCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDV 394
           L C AA A L  + +  +          L  +L  AR+   V DVR LG I  +E    V
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV 374
Query: 395 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
           +   +     + G+ +   GK  ++ L+PP II  Q+L +
Sbjct: 375 NMAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score =  131 bits (329), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 182/427 (42%), Gaps = 67/427 (15%)
Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
           + R  VV+  G+G  + D  GR YLD +SG+     G      I+A   Q +        
Sbjct: 38  HQRGTVVVTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAF 97
Query: 137 Y--YSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
           +   S   + L+++LV  S  D  RVF++N+G+EAN+  +K           P  ++  T
Sbjct: 98  FGRMSDQTVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILT 157
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
            +    N++HG T  + ++T K  Y S F   +PG       ++  YG            
Sbjct: 158 RW----NAYHGVTAVSASMTGKP-YNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVAR 212
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
               +E T         A  F EP+ G GG+    K + Q +          ++ DEV C
Sbjct: 213 LARELEDTITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVIC 272
Query: 291 GLGRTGYLWAHEHYGIFPD-IMTLAKPLAGGLPIGAALV-------TEKVASAINYGDHG 342
           G GRTG  W    Y   PD I++     AG  P+GA ++        E    AI    HG
Sbjct: 273 GFGRTGNTWGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHG 332
Query: 343 STFAGSPLVCNAAIAVLDKISN-----------PAFLA--SKLARNPHVKDVRGLGLIIG 389
            T +G P+ C  A+  +D + N           P F A   ++A  P++ + RG+G +  
Sbjct: 333 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWA 392
Query: 390 IE----------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
           +E          FD +   +  + + C D GL+    G+  V  L PP I++E ++D+  
Sbjct: 393 LEAVKDKPTKTPFDANLSVSERIANTCTDLGLICRPLGQSIV--LCPPFILTEAQMDEMF 450
Query: 437 EILCKTL 443
           E L K L
Sbjct: 451 EKLEKAL 457

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           PVV  S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV  M+  I
Sbjct: 28  PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
              P IEL ++LVA +    + VF +++G+ A E A+K A ++ +       E    F++
Sbjct: 84  THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
           F N FHG T GA+++   ++   S ++  +P   F                 V +  + A
Sbjct: 140 FRNGFHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
             +     + AAV +EPI QG GG+     E+L+ +R  CD  G LL+ DE+  G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
            L+A EH  I PDI+ L   L GG + + A L T +VA  I+ G+     HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
            C AA A L  + +  +          L  +L  AR+   V DVR LG I  +E    V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
              +     + G+ +   GK  ++ L+PP II  Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           PVV  S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV  M+  I
Sbjct: 28  PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
              P IEL ++LVA +    + VF +++G+ A E A+K A ++ +       E    F++
Sbjct: 84  THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
           F N +HG T GA+++   ++   S ++  +P   F                 V +  + A
Sbjct: 140 FRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
             +     + AAV +EPI QG GG+     E+L+ +R  CD  G LL+ DE+  G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
            L+A EH  I PDI+ L   L GG + + A L T +VA  I+ G+     HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
            C AA A L  + +  +          L  +L  AR+   V DVR LG I  +E    V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
              +     + G+ +   GK  ++ L+PP II  Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           PVV  S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV  M+  I
Sbjct: 28  PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
              P IEL ++LVA +    + VF +++G+ A E A+K A ++ +       E    F++
Sbjct: 84  THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
           F N +HG T GA+++   ++   S ++  +P   F                 V +  + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
             +     + AAV +EPI QG GG+     E+L+ +R  CD  G LL+ DE+  G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
            L+A EH  I PDI+ L   L GG + + A L T +VA  I+ G+     HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
            C AA A L  + +  +          L  +L  AR+   V DVR LG I  +E    V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
              +     + G+ +   GK  ++ L+PP II  Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           PVV  S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV  M+  I
Sbjct: 28  PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
              P IEL ++LVA +    + VF +++G+ A E A+K A ++ +       E    F++
Sbjct: 84  THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
           F N +HG T GA+++   ++   S ++  +P   F                 V +  + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
             +     + AAV +EPI QG GG+     E+L+ +R  CD  G LL+ DE+  G G TG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
            L+A EH  I PDI+ L K L GG + + A L T +VA  I+ G+     HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
            C AA A L  + +  +          L  +L  AR+   V DVR LG I  +E    V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
              +     + G+ +   GK  ++ L+PP II  Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           PVV  S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV  M+  I
Sbjct: 28  PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
              P IEL ++LVA +    + VF +++G+ A E A+K A ++ +       E    F++
Sbjct: 84  THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
           F N +HG T GA+++   ++   S ++  +P   F                 V +  + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
             +     + AAV +EPI QG GG+     E+L+ +R  CD  G LL+ DE+  G G+TG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
            L+A EH  I PDI+ L   L GG + + A L T +VA  I+ G+     HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
            C AA A L  + +  +          L  +L  AR+   V DVR LG I  +E    V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
              +     + G+ +   GK  ++ L+PP II  Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 123/381 (32%), Positives = 169/381 (44%), Gaps = 50/381 (13%)
Query: 94  DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI---PQIELAKRLV 150
           D +  E LD  S       GHG     +A+  Q  V+ HV  M+  +   P   LAK LV
Sbjct: 71  DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV--MFGGLTHEPAARLAKLLV 128
Query: 151 ACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
             + A  D VFFS++G+ + E A K A ++ R      K      +++   +HG T  A+
Sbjct: 129 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAM 185
Query: 209 A----------LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QG 257
           +          L +       F P +P      Y      +     G+ AAV VEP+ QG
Sbjct: 186 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQG 245
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
            GG+      +L  LRD C     LL+FDE+  G GRTG L+A +H G+ PDIM + K L
Sbjct: 246 AGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKAL 305
Query: 318 AGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLVCNAAIAVLDKISNPAF---- 367
            GG L + A L T  VA  I+ G      HG TF  +PL C  ++A ++ +    +    
Sbjct: 306 TGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRI 365
Query: 368 --LASKLARN-------PHVKDVRGLGLIIGIEFD-----VSATPVVDACRDSGLLVLTA 413
             LA+ L          P V DVR  G I  IE D       ATP   A  D G  V   
Sbjct: 366 TELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATP---AALDRG--VWLR 420
Query: 414 GKGNVVRLVPPLIISEQELDQ 434
              N+V  +PP I +  E+ Q
Sbjct: 421 PFRNLVYAMPPYICTPAEITQ 441

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score =  127 bits (320), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 194/422 (45%), Gaps = 68/422 (16%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS- 139
           P+ ++ G+G +L +  GRE +DLS      +LG+G    + AV   A      + +  S 
Sbjct: 39  PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 140 IPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
            P + LA+RL+A SF      +++F ++G++ANEAA +   K    S           ++
Sbjct: 99  APAVTLAERLLA-SFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSG---------VIA 148
Query: 196 FTNSFHGRTMGALALTSKE--------------HYRSPFEPVM--PGVNFVEYGNIEATR 239
           F  ++HG T+G++A +                  Y  P+ P    P  + +       T 
Sbjct: 149 FAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAIL---TLLTE 205
Query: 240 KL--IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
           KL  +  G   A F+EPIQ +GG+      FL+   D C   G L+V DEV+ GL R+G 
Sbjct: 206 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 265
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV---ASAINYGDHGSTFAGSPLVCNA 354
           L   EH G  PDI+ L K L GGLP+ A +   ++   ASA        T  G+P+   A
Sbjct: 266 LHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAM----QTLHGNPISAAA 321
Query: 355 AIAVLDKISN---PAF-----------LASKLARNPHVKDVRGLGLIIGIEF-------- 392
            +AVL+ I     PA            L+    R+P + D+RG GL  G+E         
Sbjct: 322 GLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSRE 381
Query: 393 --DVSATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449
                   ++      GL+V   G  GNV+   PPL I+E ++ +A+++L +    L + 
Sbjct: 382 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 441
Query: 450 SN 451
           SN
Sbjct: 442 SN 443

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 180/427 (42%), Gaps = 67/427 (15%)
Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
           + R  VV+  G+G  + D  GR YLD +SG+     G      I A   Q          
Sbjct: 40  HQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAF 99
Query: 137 Y--YSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
           +   S   + L+++LV  S  D  RVF++N+G+EAN+  +K           P  ++  T
Sbjct: 100 FGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILT 159
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
            +    N++HG T  + ++T K  Y S F   +PG       ++  YG            
Sbjct: 160 RW----NAYHGVTAVSASMTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVAR 214
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
               +E T +       A  F EP+ G GG+    K + Q +          ++ DEV C
Sbjct: 215 LARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC 274
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALV-------TEKVASAINYGDHG 342
           G GRTG  W    Y   PD +  +K L AG  P+GA ++        E    AI    HG
Sbjct: 275 GFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 334
Query: 343 STFAGSPLVCNAAIAVLDKISNPAF------LASK-------LARNPHVKDVRGLGLIIG 389
            T +G P+ C  A+  +D + N         LA +       +A  P++ + RG+G +  
Sbjct: 335 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWA 394
Query: 390 IEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
           +E      S TP          + + C D GL+    G+   V L PP I++E ++D+  
Sbjct: 395 LEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQS--VVLCPPFILTEAQMDEMF 452
Query: 437 EILCKTL 443
           + L K L
Sbjct: 453 DKLEKAL 459

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 194/422 (45%), Gaps = 68/422 (16%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS- 139
           P+ ++ G+G +L +  GRE +DLS      +LG+G    + AV   A      + +  S 
Sbjct: 26  PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 140 IPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
            P + LA+RL+A SF      +++F ++G++ANEAA +   K    S           ++
Sbjct: 86  APAVTLAERLLA-SFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSG---------VIA 135
Query: 196 FTNSFHGRTMGALALTSKE--------------HYRSPFEPVM--PGVNFVEYGNIEATR 239
           F  ++HG T+G++A +                  Y  P+ P    P  + +       T 
Sbjct: 136 FAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAIL---TLLTE 192
Query: 240 KL--IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
           KL  +  G   A F+EPIQ +GG+      FL+   D C   G L+V DEV+ GL R+G 
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 252
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV---ASAINYGDHGSTFAGSPLVCNA 354
           L   EH G  PDI+ L K L GGLP+ A +   ++   ASA        T  G+P+   A
Sbjct: 253 LHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAM----QTLHGNPISAAA 308
Query: 355 AIAVLDKISN---PAF-----------LASKLARNPHVKDVRGLGLIIGIEF-------- 392
            +AVL+ I     PA            L+    R+P + D+RG GL  G+E         
Sbjct: 309 GLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSRE 368
Query: 393 --DVSATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449
                   ++      GL+V   G  GNV+   PPL I+E ++ +A+++L +    L + 
Sbjct: 369 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 428
Query: 450 SN 451
           SN
Sbjct: 429 SN 430

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 169/381 (44%), Gaps = 50/381 (13%)
Query: 94  DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI---PQIELAKRLV 150
           D +  E LD  S       GHG     +A+  Q  V+ HV  M+  +   P   LAK LV
Sbjct: 51  DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV--MFGGLTHEPAARLAKLLV 108
Query: 151 ACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
             + A  D VFFS++G+ + E A K A ++ R      K      +++   +HG T  A+
Sbjct: 109 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAM 165
Query: 209 A----------LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QG 257
           +          L +       F P +P      Y      +     G+ AAV VEP+ QG
Sbjct: 166 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQG 225
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
            GG+      +L  LRD C     LL+FDE+  G GRTG L+A +H G+ PDIM + K L
Sbjct: 226 AGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKAL 285
Query: 318 AGG-LPIGAALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAF---- 367
            GG L + A L T  VA  I+ G  G+     TF  +PL C  ++A ++ +    +    
Sbjct: 286 TGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRI 345
Query: 368 --LASKLARN-------PHVKDVRGLGLIIGIEFD-----VSATPVVDACRDSGLLVLTA 413
             LA+ L          P V DVR  G I  IE D       ATP   A  D G  V   
Sbjct: 346 TELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATP---AALDRG--VWLR 400
Query: 414 GKGNVVRLVPPLIISEQELDQ 434
              N+V  +PP I +  E+ Q
Sbjct: 401 PFRNLVYAMPPYICTPAEITQ 421

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 178/427 (41%), Gaps = 67/427 (15%)
Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVS 134
           + R  VV+  G+G  + D  GR YLD +SG+     G      I A   Q       H +
Sbjct: 46  HQRGTVVVTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAA 105
Query: 135 NMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
               S   + L+++LV  S  D  RVF++N+G+EAN+  +K           P  ++  T
Sbjct: 106 FGKMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILT 165
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
            +    N++HG T  + ++T    Y S F   +PG       ++  YG            
Sbjct: 166 RW----NAYHGATAVSASMTGFP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVAR 220
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
               +E T +       A  F EP+ G GG+    K + Q +          ++ DEV C
Sbjct: 221 LARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVC 280
Query: 291 GLGRTGYLWAHEHYGIFPD-IMTLAKPLAGGLPIGAALV-------TEKVASAINYGDHG 342
           G GRTG  W    Y   PD I++     AG  P+GA ++        E    AI    HG
Sbjct: 281 GFGRTGNTWGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 340
Query: 343 STFAGSPLVCNAAIAVLDKISN-----------PAF--LASKLARNPHVKDVRGLGLIIG 389
            T +G P+ C  A+  +D + N           P F      +A  P++ + RG+G +  
Sbjct: 341 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWA 400
Query: 390 IEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
           +E      S TP          + + C D GL+    G+   V L PP I++E ++D+  
Sbjct: 401 LEAVKDKASKTPFDGNLSVSERIANTCTDLGLICFPLGQS--VVLCPPFILTEAQMDEMF 458
Query: 437 EILCKTL 443
           + L K L
Sbjct: 459 DKLEKAL 465

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 169/381 (44%), Gaps = 50/381 (13%)
Query: 94  DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI---PQIELAKRLV 150
           D +  E LD  S       GHG     +A+  Q  V+ HV  M+  +   P   LAK LV
Sbjct: 76  DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV--MFGGLTHEPAARLAKLLV 133
Query: 151 ACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
             + A  D VFFS++G+ + E A K A ++ R      K      +++   +HG T  A+
Sbjct: 134 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAM 190
Query: 209 A----------LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QG 257
           +          L +       F P +P      Y      +     G+ AAV VEP+ QG
Sbjct: 191 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQG 250
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
            GG+      +L  LRD C     LL+FDE+  G GRTG L+A +H G+ PDIM + K L
Sbjct: 251 AGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKAL 310
Query: 318 AGG-LPIGAALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAF---- 367
            GG L + A L T  VA  I+ G  G+     TF  +PL C  ++A ++ +    +    
Sbjct: 311 TGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRI 370
Query: 368 --LASKLARN-------PHVKDVRGLGLIIGIEFD-----VSATPVVDACRDSGLLVLTA 413
             LA+ L          P V DVR  G I  IE D       ATP   A  D G  V   
Sbjct: 371 TELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATP---AALDRG--VWLR 425
Query: 414 GKGNVVRLVPPLIISEQELDQ 434
              N+V  +PP I +  E+ Q
Sbjct: 426 PFRNLVYAMPPYICTPAEITQ 446

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 184/410 (44%), Gaps = 67/410 (16%)
Query: 83  VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142
           V   G+G  LYD  GR YLD SSG  V  +GHG A+  + +  QA  L  V    +S   
Sbjct: 14  VAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDV 73
Query: 143 IE-----LAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT-EFVSF 196
           +E     LA+ +   +F  R +  + G+EA E+A+K AR++    + +  EP   + ++ 
Sbjct: 74  LEEYAGRLARFVGLPTF--RFWAVSGGSEATESAVKLARQY----HVERGEPGRFKVITR 127
Query: 197 TNSFHGRTMGALALTSKEHYRSPFEPVM------------PGVNFVEYGNIEATRKLIQ- 243
             S+HG ++G+LA +     R  + P+M            P  N  E  + E  R L++ 
Sbjct: 128 VPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAE--DAEGLRALLER 185
Query: 244 --PGKTAAVFVEPIQGEG-GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
             P   AA   EP+ G      +    + + +RD CD+AG + + DEV  G+GR G   A
Sbjct: 186 EGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLA 245
Query: 301 HEHY-GIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGD----HGSTFAGSPLVCNA 354
              + G+ PDI  L K LA G  P+   L   +V   +  G     HG T+AG P+   A
Sbjct: 246 LSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAA 305
Query: 355 AIAVLDKISNP--------------AFLASKLARNPHVKDVRGLG---------LIIGIE 391
            ++VLD +                 A L +  AR P +  VRG G         L  G  
Sbjct: 306 GLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQA 365
Query: 392 FDVS--ATPVVDACRDSGLLVLTA------GKGNVVRLVPPLIISEQELD 433
           F+    A+ +  A    GL+          G+G+ + L PPL I+  E+D
Sbjct: 366 FETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVD 415

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 175/427 (40%), Gaps = 67/427 (15%)
Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVS 134
           + R  VV+  G+G  + D  GR YLD +SG+     G      I A   Q       H  
Sbjct: 46  HQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAF 105
Query: 135 NMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
               S   + L+++LV  S  D  RVF++N+G+EAN+  +K           P  ++  T
Sbjct: 106 FGRXSDQTVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILT 165
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
            +    N++HG T  + + T K  Y S F   +PG       ++  YG            
Sbjct: 166 RW----NAYHGVTAVSASXTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVAR 220
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
               +E T +       A  F EP+ G GG+    K + Q +          ++ DEV C
Sbjct: 221 LARELEETIQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC 280
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALV-------TEKVASAINYGDHG 342
           G GRTG  W    Y   PD +  +K L AG  P GA ++        E    AI    HG
Sbjct: 281 GFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHG 340
Query: 343 STFAGSPLVCNAAIAVLDKISN-----------PAF--LASKLARNPHVKDVRGLGLIIG 389
            T +G P+ C  A+  +D + N           P F      +A  P++ + RG+G    
Sbjct: 341 FTASGHPVGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWA 400
Query: 390 IEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
           +E      S TP          + + C D GL+    G+   V L PP I++E + D+  
Sbjct: 401 LEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQS--VVLCPPFILTEAQXDEXF 458
Query: 437 EILCKTL 443
           + L K L
Sbjct: 459 DKLEKAL 465

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 201/449 (44%), Gaps = 63/449 (14%)
Query: 48  NDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGI 107
           NDA   +AG +G   ++ +    + +      A  VL   +G  ++  +GR  +D  +G+
Sbjct: 5   NDATN-AAGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGM 63
Query: 108 AVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSFAD--RVFFSNTG 164
               +G+G  + + A+  QA VL + S  Y +  P   LA+++   +  D  R+FF+  G
Sbjct: 64  WCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGG 123
Query: 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM 224
           + A ++A++F+   + ++N   +      +   + +HG T    A T +      F+   
Sbjct: 124 STAVDSALRFS---EFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQ 180
Query: 225 PGVNFVEYGN-------------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265
             ++F+   N                    E   + + P   AA   EPI   GG+    
Sbjct: 181 DRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPP 240
Query: 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH-YGIFPDIMTLAKPLAGG-LPI 323
             +    +  C+    L + DEV  G GR G  +A E  +G+ PDI+T AK +  G +P+
Sbjct: 241 AGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPL 300
Query: 324 GAALVTEKVASAI-------NYGDHGSTFAGSPLVCNAAIA---------VLDKISNPA- 366
           G   ++E V + I       ++  +G T++  P+ C AA+A         ++D+    A 
Sbjct: 301 GGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMAD 360
Query: 367 FLASKLA--RN-PHVKDVRGLGLI------------IGIEFDVSATPVVDA-CRDSGLLV 410
           + A+ LA  R+ P V + R +GL+             G   D + T  +D  C + GL+V
Sbjct: 361 YFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIV 420
Query: 411 LTAGKGNVVRLVPPLIISEQELDQAVEIL 439
                G++  + PPLIIS  ++D+ V I+
Sbjct: 421 RPL--GDLCVISPPLIISRAQIDEMVAIM 447

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 181/418 (43%), Gaps = 57/418 (13%)
Query: 79  RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
           R P ++ + +G  L D +GR+  D  SG+     GH   +  +AV  Q + L +     Y
Sbjct: 31  RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQY 90
Query: 139 SIP-QIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
             P   +LA+++   +  +   VFF+++G+E    A+K  R + R     +K   T+ + 
Sbjct: 91  GHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATK---TKMIG 147
Query: 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---------------GNIEATRK 240
               +HG  +   +L      R  F   M  V+ + +               G I    +
Sbjct: 148 RARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207
Query: 241 LIQ------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
           L++          AAVFVEP+ G  G+    + +L+  R+ C+    LLVFDEV  G GR
Sbjct: 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGR 267
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS----------AINYGDHGS 343
           TG ++  + +G+ PD+M +AK +  G +P+GA + + ++            A+ +  HG 
Sbjct: 268 TGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEF-PHGY 326
Query: 344 TFAGSPLVCNAAIAVLDKISNPAFLASKLARNPH-------------VKDVRGLGLIIGI 390
           T++  P+ C A +A L  +     + S     PH             V D+R  GL   I
Sbjct: 327 TYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAI 386
Query: 391 EFDVSATPVVDACRDSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTL 443
           +        +    ++G+ +  AG      G+ ++  P      Q+LD+  + + + L
Sbjct: 387 QIAPRDGDAIVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVL 444

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 180/416 (43%), Gaps = 59/416 (14%)
Query: 84  LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
           L    G  L DA  GR YLD+ + +A +ALG       D     A + QA +    ++  
Sbjct: 39  LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
           YS+     +E   R++       +FF   G  A E A+K A  ++ RH+     +PA  T
Sbjct: 99  YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
           + +    +FHGR+   L+LT+ +     R P F+      P M PG++   +     EA 
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
           R+       +P   A    EPIQGEGG      EF   +R+ CD+  ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
            TG  WA++   + PDI+   K       +AG      A     V S +N     ST+ G
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLN-----STWGG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASKLARNPHVK---------------DVRGLGLIIGIEF 392
           +      A  +L+ I         +    +++               D RG GL+     
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393
Query: 393 DVSA--TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
             +A    ++       ++VL AG  + VR  PPL +S  E+D A+  +   LPV+
Sbjct: 394 PTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 176/411 (42%), Gaps = 49/411 (11%)
Query: 84  LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
           L    G  L DA  GR YLD+ + +A +ALG       D     A + QA +    ++  
Sbjct: 39  LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
           YS+     +E   R++       +FF   G  A E A+K A  ++ RH+     +PA  T
Sbjct: 99  YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
           + +    +FHGR+   L+LT+ +     R P F+      P M PG++   +     EA 
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
           R+       +P   A    EPIQGEGG      EF   +R+ CD+  ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH-GSTFAGSPLVC 352
            TG  WA++   + PDI+   K       +    V E   +         ST+ G+    
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLASTWGGNLTDM 338
Query: 353 NAAIAVLDKISNPAFLASKLARNPHVK---------------DVRGLGLIIGIEFDVSA- 396
             A  +L+ I         +    +++               D RG GL+       +A 
Sbjct: 339 VRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTAD 398
Query: 397 -TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
              ++       ++VL AG  + VR  PPL +S  E+D A+  +   LPV+
Sbjct: 399 RDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 180/416 (43%), Gaps = 59/416 (14%)
Query: 84  LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
           L    G  L DA  GR YLD+ + +A +ALG       D     A + QA +    ++  
Sbjct: 39  LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
           YS+     +E   R++       +FF   G  A E A+K A  ++ RH+     +PA  T
Sbjct: 99  YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
           + +    +FHGR+   L+LT+ +     R P F+      P M PG++   +     EA 
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
           R+       +P   A    EPIQGEGG      EF   +R+ CD+  ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
            TG  WA++   + PDI+   K       +AG      A     V S +N     S++ G
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLN-----SSWGG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASKLARNPHVK---------------DVRGLGLIIGIEF 392
           +      A  +L+ I         +    +++               D RG GL+     
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393
Query: 393 DVSA--TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
             +A    ++       ++VL AG  + VR  PPL +S  E+D A+  +   LPV+
Sbjct: 394 PTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448

>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 134/300 (44%), Gaps = 29/300 (9%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           P+V    KG  ++D +G +Y+D         +GH   + I A+   A +    S     +
Sbjct: 19  PIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDAL--HAALEKGTSFGAPCL 76
Query: 141 PQIELAKRLVAC-SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
            +  LA+ ++A     + V F N+GTEA  A ++  R + +           + + F   
Sbjct: 77  LENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYTQRE---------KVIKFEGC 127
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGV--------NFVEYGNIEATRKLIQ--PGKTAA 249
           +HG       + +     +   P  PGV            Y ++EA  +L +  P   A 
Sbjct: 128 YHGHA-DMFLVKAGSGVATLGLPDSPGVPKATTAATLTAPYNDLEAVSRLFEQYPNDIAG 186
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
           V +EP+ G  G       FL+ LR+     GALLVFDEV  G  R  Y  A E +G+ PD
Sbjct: 187 VILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGF-RIAYGGAQEKFGVTPD 245
Query: 310 IMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
           + TL K + GGLP+GA    A + + VA A      G T +G+PL   A I  L+ +S P
Sbjct: 246 LTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAG-TLSGNPLAMTAGIKTLEILSRP 304

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 179/416 (43%), Gaps = 59/416 (14%)
Query: 84  LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
           L    G  L DA  GR YLD+ + +A +ALG       D     A + QA +    ++  
Sbjct: 39  LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
           YS+     +E   R++       +FF   G  A E A+K A  ++ RH+     +PA  T
Sbjct: 99  YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
           + +    +FHGR+   L+LT+ +     R P F+      P M PG++   +     EA 
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
           R+       +P   A    EPIQG GG      EF   +R+ CD+  ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
            TG  WA++   + PDI+   K       +AG      A     V S +N     ST+ G
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLN-----STWGG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASKLARNPHVK---------------DVRGLGLIIGIEF 392
           +      A  +L+ I         +    +++               D RG GL+     
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393
Query: 393 DVSA--TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
             +A    ++       ++VL AG  + VR  PPL +S  E+D A+  +   LPV+
Sbjct: 394 PTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448

>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 142/308 (46%), Gaps = 41/308 (13%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGD---ADWIKAVVDQANVL---THVS 134
           P+ +  GKG K++D +G EY+D         LGH +    + +K V +        T V 
Sbjct: 44  PIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESLKKVAEYGTSFGAPTEVE 103
Query: 135 NMYYSIPQIELAKRLV-ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
           N        ELAK ++      + V   ++GTEA  +A++ AR +   +         + 
Sbjct: 104 N--------ELAKLVIDRVPSVEIVRMVSSGTEATMSALRLARGYTGRN---------KI 146
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN--------FVEYGNIEATRKLIQP- 244
           + F   +HG    +L + +     +   P  PGV          V Y ++E+ +   Q  
Sbjct: 147 LKFEGCYHGHG-DSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYNDLESVKLAFQQF 205
Query: 245 -GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303
               A V VEP+ G  G+    + FLQ LRD  +  G+LL+FDEV  G  R  Y  A  +
Sbjct: 206 GEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGY 264
Query: 304 YGIFPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
           +G+ PD+  L K + GGLP+GA    A + E++A +      G T +G+PL   A +  L
Sbjct: 265 FGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAG-TLSGNPLAMTAGLETL 323
Query: 360 DKISNPAF 367
            +++  ++
Sbjct: 324 KQLTPDSY 331

>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 27/298 (9%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHVSNMYYS 139
           P+ +    G  L+D +G+ Y+D         LGH      +AV++     L+  +     
Sbjct: 36  PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAVIEAVERGLSFGAPTEXE 95
Query: 140 IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
           +   +L   LV     D V   N+GTEA  +AI+ AR +             + + F   
Sbjct: 96  VKXAQLVTDLVPTX--DXVRXVNSGTEATXSAIRLARGYTGRD---------KIIKFEGC 144
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGV--NFVE------YGNIEATRKLIQ--PGKTAA 249
           +HG     L + +     +  +P  PGV  +F +      Y ++ + R+  +  P + A 
Sbjct: 145 YHGHA-DCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVAC 203
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
           + VEP+ G         EFL  LR  CD+ GALL+ DEV  G  R     A ++Y + PD
Sbjct: 204 IIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQDYYHVIPD 262
Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGD---HGSTFAGSPLVCNAAIAVLDKISN 364
           +  L K + GG P+GA     +V +A+          T +G+P+   A  A L +IS 
Sbjct: 263 LTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEISQ 320

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 139/308 (45%), Gaps = 37/308 (12%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
           P  L  G+G  ++DA+G  YLD         LGH     +  V +     T    + +  
Sbjct: 35  PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRE-----TLERGLTFGA 89
Query: 141 P---QIELAKRLV-ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
           P   ++ LAK++  A  F D V F N+GTEA  +A++ AR +               V F
Sbjct: 90  PSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPY---------IVKF 140
Query: 197 TNSFHGRT--------MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GK 246
             ++HG           GAL L        P E        +EY + E  R++++    +
Sbjct: 141 RGNYHGHADGLLVEAGSGALTLGVPSSAGVP-EEYAKLTLVLEYNDPEGLREVLKRRGEE 199
Query: 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI 306
            AA+  EP+ G  G+   T++FL+ L +A    G LL+ DEV  G  R  +  A E  G+
Sbjct: 200 IAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL 257
Query: 307 FPDIMTLAKPLAGGLPIGAAL----VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362
            PD++TL K L GGLP  A      + EKVA  +       T +G+PL   A +A L+ +
Sbjct: 258 KPDLVTLGKILGGGLPAAAYAGRREIMEKVAP-LGPVYQAGTLSGNPLAMAAGLATLELL 316
Query: 363 -SNPAFLA 369
             NP + A
Sbjct: 317 EENPGYYA 324

>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 144/315 (45%), Gaps = 53/315 (16%)
Query: 81  PVVLASGKGCKLYDAEGREYLD--LSSGIAVNALGHGD---ADWIKAVVDQANVL---TH 132
           P+    GKG K+YD +G EY+D  LS G  ++  GH +    + +KAV ++       T 
Sbjct: 36  PLFXERGKGSKVYDIDGNEYIDYVLSWGPLIH--GHANDRVVEALKAVAERGTSFGAPTE 93
Query: 133 VSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187
           + N     +   +P IE+ + +            N+GTEA  +A++ AR +   +     
Sbjct: 94  IENKLAKLVIERVPSIEIVRXV------------NSGTEATXSALRLARGYTGRN----- 136
Query: 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN--------FVEYGNIEATR 239
               + + F   +HG    +L + +     +   P  PGV          V Y ++E+ +
Sbjct: 137 ----KILKFIGCYHGHG-DSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVK 191
Query: 240 KLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
              +      A V VEP+ G  G+      FL+ LR+  +  GALL+FDEV  G  R  Y
Sbjct: 192 YAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAY 250
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCN 353
                +YG+ PD+  L K + GGLP+GA    A +  +VA +      G T +G+PL   
Sbjct: 251 NCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAG-TLSGNPLAXA 309
Query: 354 AAIAVLDKISNPAFL 368
           A    L +++  +++
Sbjct: 310 AGYETLVQLTPESYV 324

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 120/282 (42%), Gaps = 49/282 (17%)
Query: 88  KGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELA 146
           +G  L D +G   LDL S I+   +G+     +K V    NV T ++     I P     
Sbjct: 53  RGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFV 112
Query: 147 KRL------VACSFADRVFFSNTGTEANEAAIK----FARKFQRHSNPDSKE-------- 188
           ++L      VA     ++     G+ +NE A K    + R  +R  +  SKE        
Sbjct: 113 EKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMIN 172
Query: 189 -----PATEFVSFTNSFHGRTMGALALTSKE--------HYRSPFEPV----MPGVNFVE 231
                P    +SF  +FHGRTMG LA T  +         +  P  P      P   FV+
Sbjct: 173 QAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK 232
Query: 232 YGNIEATR----------KLIQPGKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
               E  R          K  +  KT A + VEPIQ EGG   A+ +F + LRD     G
Sbjct: 233 ENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHG 292
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKPLAGG 320
              + DEVQ G G TG  WAHEH+G+    D+MT +K +  G
Sbjct: 293 CAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG 334

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
            + E+  A +KL+ G  +   RA       P+V    K    +D +G  Y+D        
Sbjct: 10  KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 69
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
             GH   + I+A+                 NVL  + N   ++P IE+ +          
Sbjct: 70  ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 117
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
             F N+GTEA  A ++  R +             + + F   +HG            +  
Sbjct: 118 --FVNSGTEACMAVLRLMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 166
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
           L L S     SP  P     N +   Y ++EA + L    PG+ A V +EPI G  G   
Sbjct: 167 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 221
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
               FL+ LR+   +  ALLVFDEV  G  R  Y    E +G+ PD+ TL K + GGLP+
Sbjct: 222 PDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 280
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
           GA      + + VA A      G T +G+PL   A I  L+ +  P
Sbjct: 281 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 325

>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
            + E+  A +KL+ G  +   RA       P+V    K    +D +G  Y+D        
Sbjct: 10  KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 69
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
             GH   + I+A+                 NVL  + N   ++P IE+ +          
Sbjct: 70  ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 117
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
             F N+GTEA  A ++  R +             + + F   +HG            +  
Sbjct: 118 --FVNSGTEACMAVLRIMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 166
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
           L L S     SP  P     N +   Y ++EA + L    PG+ A V +EPI G  G   
Sbjct: 167 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 221
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
               FL+ LR+   +  ALLVFDEV  G  R  Y    E +G+ PD+ TL K + GGLP+
Sbjct: 222 PDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 280
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
           GA      + + VA A      G T +G+PL   A I  L+ +  P
Sbjct: 281 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 325

>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
            + E+  A +KL+ G  +   RA       P+V    K    +D +G  Y+D        
Sbjct: 5   KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
             GH   + I+A+                 NVL  + N   ++P IE+ +          
Sbjct: 65  ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 112
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
             F N+GTEA  A ++  R +             + + F   +HG            +  
Sbjct: 113 --FVNSGTEACMAVLRIMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 161
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
           L L S     SP  P     N +   Y ++EA + L    PG+ A V +EPI G  G   
Sbjct: 162 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 216
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
               FL+ LR+   +  ALLVFDEV  G  R  Y    E +G+ PD+ TL K + GGLP+
Sbjct: 217 PDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 275
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
           GA      + + VA A      G T +G+PL   A I  L+ +  P
Sbjct: 276 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 320

>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
            + E+  A +KL+ G  +   RA       P+V    K    +D +G  Y+D        
Sbjct: 5   KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
             GH   + I+A+                 NVL  + N   ++P IE+ +          
Sbjct: 65  ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 112
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
             F N+GTEA  A ++  R +             + + F   +HG            +  
Sbjct: 113 --FVNSGTEACMAVLRLMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 161
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
           L L S     SP  P     N +   Y ++EA + L    PG+ A V +EPI G  G   
Sbjct: 162 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 216
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
               FL+ LR+   +  ALLVFDEV  G  R  Y    E +G+ PD+ TL K + GGLP+
Sbjct: 217 PDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 275
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
           GA      + + VA A      G T +G+PL   A I  L+ +  P
Sbjct: 276 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 320

>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
            + E+  A +KL+ G  +   RA       P+V    K    +D +G  Y+D        
Sbjct: 5   KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
             GH   + I+A+                 NVL  + N   ++P IE+ +          
Sbjct: 65  ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 112
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
             F N+GTEA  A ++  R +             + + F   +HG            +  
Sbjct: 113 --FVNSGTEACMAVLRIMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 161
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
           L L S     SP  P     N +   Y ++EA + L    PG+ A V +EPI G  G   
Sbjct: 162 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 216
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
               FL+ LR+   +  ALLVFDEV  G  R  Y    E +G+ PD+ TL K + GGLP+
Sbjct: 217 PDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 275
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
           GA      + + VA A      G T +G+PL   A I  L+ +  P
Sbjct: 276 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 320

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 131/299 (43%), Gaps = 35/299 (11%)
Query: 80  APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139
           AP+    GKG   +D +G +Y+D  +       GH      KA+   A      + + Y 
Sbjct: 37  APIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAE-----NGVLYG 91
Query: 140 IP---QIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
            P   +++ AK L     A D+V F N+GTEA    I+ AR +            T+   
Sbjct: 92  TPTALEVKFAKXLKEAXPALDKVRFVNSGTEAVXTTIRVARAYTGR---------TKIXK 142
Query: 196 FTNSFHGRT--------MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-- 245
           F   +HG +         G   L + +    P + +   V  V + N+E  ++ +     
Sbjct: 143 FAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVP-QSIAQEVITVPFNNVETLKEALDKWGH 201
Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
           + AA+ VEPI G  GI      FL+ + +   +AGAL+++DEV     R  Y  A +  G
Sbjct: 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFXYGGAQDLLG 260
Query: 306 IFPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
           + PD+  L   + GGLPIGA      + E+VA  +       T AG+P    + IA L+
Sbjct: 261 VTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAP-LGPAYQAGTXAGNPASXASGIACLE 318

>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 143/322 (44%), Gaps = 42/322 (13%)
Query: 62  NKEVMEAEKKLLVGTYNRA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH 114
           ++   EA+ + + G  +R+       P+ +A G+G  L+DA+G  Y D  +       GH
Sbjct: 44  SQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGH 103
Query: 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAI 172
              +   AV++      +++   +++ +  LA RL+   F   +++ F+N+GTEAN  A+
Sbjct: 104 SAPEIRDAVIEAMQGGINLTG--HNLLEGRLA-RLICERFPQIEQLRFTNSGTEANLMAL 160
Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232
             A  F             + V F+  +HG  +G  A  S      PF+ ++     + Y
Sbjct: 161 TAALHFTGRR---------KIVVFSGGYHGGVLGFGARPSPT--TVPFDFLV-----LPY 204
Query: 233 GNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
            + +  R  I+    + A V VEP+QG  G      +FLQ LR++    GALLVFDEV  
Sbjct: 205 NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVM- 263
Query: 291 GLGRTGYLWAH---EHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD----HGS 343
               T  L  H      GI  D+ TL K + GG+  GA      V +  +       H  
Sbjct: 264 ----TSRLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSG 319
Query: 344 TFAGSPLVCNAAIAVLDKISNP 365
           TF  + +   A  A L K+  P
Sbjct: 320 TFNNNVMTMAAGYAGLTKLFTP 341

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 140/338 (41%), Gaps = 40/338 (11%)
Query: 59  GRNNKEVMEAEKKLLVGTYN---RA-----PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
           G  ++ + E  K+L  G  N   RA     P  +  G+G  LY  +G   +DL       
Sbjct: 9   GEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPL 68
Query: 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVA-CSFADRVFFSNTGTE 166
            LGH     ++AV +            Y  P   ++ LA++++        + F N+GTE
Sbjct: 69  ILGHKHPRVLEAVEEAL-----ARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTE 123
Query: 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVM 224
           A   AI+ AR +               + F   +HG     L  A ++  HY  P    +
Sbjct: 124 ATMTAIRLARGYTGRDL---------ILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGV 174
Query: 225 PG-----VNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277
           P           Y ++EA  ++      + A V VEP+    G+    +EFL  L+    
Sbjct: 175 PEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSR 234
Query: 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN 337
           ++GALL+ DEV  G  R G   A  ++ I  DI+ L K + GG P+GA   + +V S + 
Sbjct: 235 ESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLT 293
Query: 338 YGD---HGSTFAGSPLVCNAAIAVLDKI-SNPAFLASK 371
                 +  TF   P+   A +A L  +   P +  S+
Sbjct: 294 PQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSR 331

>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 127/301 (42%), Gaps = 50/301 (16%)
Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA-----NVLTHVSN 135
           P+V+A G G +  D +G  Y++          GH     I+A V++A     N+ T   N
Sbjct: 83  PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHP-VIRAAVERALAVGLNLSTQTEN 141
Query: 136 MYYSIPQIELAKRLVACSFADR------VFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
                      + L A +  DR      V F+N+GTEAN  A+  A              
Sbjct: 142 -----------EALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKT------ 184
Query: 190 ATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEYGNIEATRKLIQPG--K 246
               ++F   +HG   G L   S      +P+  V+ GV    Y ++E T  L++     
Sbjct: 185 ---VLAFDGGYHG---GLLNFASGHAPTNAPYHVVL-GV----YNDVEGTADLLKRHGHD 233
Query: 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI 306
            AA+ VEP+ G GG   A + FL  LR      GALL+FDEV     R     A E  GI
Sbjct: 234 CAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT--SRLSGGGAQEMLGI 291
Query: 307 FPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDK 361
             D+ TL K + GG+  GA      + E+   A +    H  TF  + L  +A  A L +
Sbjct: 292 SADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQ 351
Query: 362 I 362
           I
Sbjct: 352 I 352

>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 74/298 (24%)
Query: 141 PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA-RKFQRHSN-----PDSKEPAT 191
           P ++ A+ L   V   +A RV+FS+ G+ A E A+K A RKF    N      + K    
Sbjct: 425 PALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVV 484
Query: 192 EFVSFTNSFHGRTMGALALTSKEHY----RSPFEP-----VMPGVNFV------------ 230
           + ++   S+HG T+GA+   +   Y    + P+       + P   F+            
Sbjct: 485 KVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES 544
Query: 231 ------EYGNIEATRKLI----------------------------QPGKTAAVFVEP-I 255
                 EYG   +  ++                             Q     A+ +EP I
Sbjct: 545 FSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604
Query: 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315
            G GG++     F + L + C +    ++FDEV  G  R G     E  G  PDI   AK
Sbjct: 605 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 664
Query: 316 PLAGGL-PIGAALVTEKVASAINYGD-------HGSTFAGSPLVCNAAIAVLDKISNP 365
            L GG+ P+   L T+ V  + + GD       HG +++   + C  A   +    +P
Sbjct: 665 LLTGGMVPLAVTLATDAVFDSFS-GDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDP 721

>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 113/298 (37%), Gaps = 74/298 (24%)
Query: 141 PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA-RKFQRHSN-----PDSKEPAT 191
           P ++ A+ L   V   +A RV+FS+ G+ A E A+K A RKF    N      + K    
Sbjct: 425 PALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDHNFCEATEEEKHIVV 484
Query: 192 EFVSFTNSFHGRTMGALALTSKEHY----RSPFEP-----VMPGVNFV------------ 230
           + ++   S+HG T+GA    +   Y    + P+       + P   F+            
Sbjct: 485 KVIALRGSYHGDTLGAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES 544
Query: 231 ------EYGNIEATRKLIQPGKTA----------------------------AVFVEP-I 255
                 EYG   +  ++    + A                            A+ +EP I
Sbjct: 545 FSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604
Query: 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315
            G GG +     F + L + C +    ++FDEV  G  R G     E  G  PDI   AK
Sbjct: 605 HGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 664
Query: 316 PLAGG-LPIGAALVTEKVASAINYGD-------HGSTFAGSPLVCNAAIAVLDKISNP 365
            L GG +P+   L T+ V  + + GD       HG +++     C  A   +    +P
Sbjct: 665 LLTGGXVPLAVTLATDAVFDSFS-GDSKLKALLHGHSYSAHAXGCATAAKAIQWFKDP 721

>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 111/281 (39%), Gaps = 26/281 (9%)
Query: 82  VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141
           + ++  +G    D +G  YLD   G     LGHG      A+   A  L+H      S P
Sbjct: 41  LFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAI---AEALSHGVQYAASHP 97
Query: 142 -QIELAKRLVACSFADRVF-FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
            ++  A+R+VA   + R   F+ +GTE    A++ AR F               + F   
Sbjct: 98  LEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRR---------MILRFEGH 148
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGVN----FVEYGNIEATRKLI--QPGKTAAVFVE 253
           +HG    + +  +      P   V+P        +   +IE  R++        AA   E
Sbjct: 149 YHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAE 208
Query: 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313
           P+    G+   +  FL+   +     GAL + DEV  G  R G         + PD+  L
Sbjct: 209 PVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCL 267
Query: 314 AKPLAGGLPIGAALVTEKVASAINYGD-----HGSTFAGSP 349
           AK  AGGLP G     E V   ++ G      H  TF G+P
Sbjct: 268 AKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNP 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	451
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	0.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	0.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	0.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	0.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	0.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	1e-178
1z7d_A	433	Ornithine aminotransferase; structural genomics co	1e-175
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	1e-174
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	1e-164
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	1e-159
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	1e-158
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	1e-154
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	1e-152
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	1e-143
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	1e-142
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	1e-139
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-111
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	1e-106
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-103
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	1e-102
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	1e-101
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	1e-100
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	1e-98
3hmu_A	472	Aminotransferase, class III; structural genomics,	5e-95
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	8e-95
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	2e-94
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-91
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	4e-73
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	5e-45
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	4e-42
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	8e-41
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	2e-40
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	6e-40
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	2e-39
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	7e-38
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	5e-37

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  584 bits (1508), Expect = 0.0
 Identities = 149/401 (37%), Positives = 231/401 (57%), Gaps = 23/401 (5%)

Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
                     ++++  Y  A  +   GKG +++D +G+EY+D + GIAV ALGH     +
Sbjct: 20  QTAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALV 79

Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
           +A+  Q   L H SN++ + P + L ++L+  +FA+RV F N+GTEANE A K AR +  
Sbjct: 80  EALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYAC 139

Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
             +   K   T+ ++F N+FHGR++  +++  +  Y   F P    +  V + ++ A + 
Sbjct: 140 VRHSPFK---TKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKA 196

Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
           ++    T AV VEPIQGEGG+ +AT EFL+ LRD CD+  ALLVFDEVQCG+GRTG L+A
Sbjct: 197 VMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFA 255

Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
           + HYG+ PDI+T AK L GG P+ A L T+++ASA + G HGST+ G+PL C  A A  D
Sbjct: 256 YMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFD 315

Query: 361 KISNPAFLA--------------SKLARNPHVKDVRGLGLIIGIEFDV----SATPVVDA 402
            I+ P  L               +   +     D+RG+GL+IG E        A   + A
Sbjct: 316 IINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYA 375

Query: 403 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
             ++G++VL AG  +V+R  P L++ E ++ + ++   + +
Sbjct: 376 GAEAGVMVLNAG-ADVMRFAPSLVVEEADIHEGMQRFAQAV 415

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  581 bits (1500), Expect = 0.0
 Identities = 156/397 (39%), Positives = 234/397 (58%), Gaps = 23/397 (5%)

Query: 64  EVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAV 123
           ++   E+  ++ TY R  +VL  G+G  L+D + ++YLD SSGI V ALG+  A +   +
Sbjct: 2   KMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKI 61

Query: 124 VDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSN 183
             Q + L H SN+YY+      AK L   S  +RVFF+N+GTE+ E A+K ARK+  +  
Sbjct: 62  KAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKG 121

Query: 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243
                   +F++F +SFHGRT+GAL+LT+ E Y+ PF+P++ GV F +Y +I +  KL+ 
Sbjct: 122 VK----GGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVN 177

Query: 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303
             KT A+ +E +QGEGGI  A K+F + LR  CD+   LL+ DE+QCG+GR+G  +A+EH
Sbjct: 178 E-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEH 236

Query: 304 YGIFPDIMTLAKPLAGGLPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKI 362
             I PDIMT AK L  GL +GA ++ +KVAS ++  GDHGST+ G+PLVC    AV +  
Sbjct: 237 AQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIF 296

Query: 363 SNPAFLA--------------SKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDS 406
                L                 +      K  +GLG + G+  D  V    V+  C+++
Sbjct: 297 KEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQEN 356

Query: 407 GLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
            LL+++ G  N +R +PPLI+ ++ +D+  E L K L
Sbjct: 357 ALLLISCG-ENDLRFLPPLILQKEHIDEMSEKLRKAL 392

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score =  581 bits (1499), Expect = 0.0
 Identities = 180/399 (45%), Positives = 247/399 (61%), Gaps = 23/399 (5%)

Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
           ++K         L+ TY+R P     GKG  +YD +G  YLD +SGIAVN LGH     +
Sbjct: 3   SDKIHHHHHHMYLMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLV 62

Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
           +A+ DQA  L H SN++++ PQ+ELA+ L   +F  +VFF+NTGTEANEAAIK ARK+ +
Sbjct: 63  EAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGK 122

Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
             +          +S  NSFHGRT+G+L  T +  Y+ PFEP++PG  + E+ N+E  R+
Sbjct: 123 KKSEK----KYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR 178

Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
            +      AVF+EPIQGE GI  ATKEFL+  R  CD+  ALLVFDEVQCG+GRTG L+A
Sbjct: 179 KMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFA 237

Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
           ++ YG+ PD++T AK L GG+PIGA +V E+ A+ +  GDHG+TF G+PL C A + V+ 
Sbjct: 238 YQKYGVVPDVLTTAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIK 296

Query: 361 KISNPAFLA--------------SKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACR 404
           +++   FL                       V DVRG+GL+IGI+F  +VS   V   C 
Sbjct: 297 ELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCF 356

Query: 405 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           ++ LLV+ AG  N +R +PPL +   E+D AVE L K L
Sbjct: 357 ENKLLVVPAG-NNTIRFLPPLTVEYGEIDLAVETLKKVL 394

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  567 bits (1463), Expect = 0.0
 Identities = 153/398 (38%), Positives = 237/398 (59%), Gaps = 26/398 (6%)

Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
           + + ++EAEK L  G YN+  +++  G+G +++DAEG EY+D   G  V  LGHG+ + +
Sbjct: 8   DWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVV 67

Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVA--CSFADRVFFSNTGTEANEAAIKFARKF 178
           +AV  QA  L  +     +  + E  + L A      +RVF  N+GTEANEAA+KFAR  
Sbjct: 68  EAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH 127

Query: 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT 238
                        +FV+    F GRTMG+L++T +  YR PF P++  V F+ Y ++EA 
Sbjct: 128 TGR---------KKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEAL 178

Query: 239 RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
           ++ +   +TAAV +EP+QGEGG+  AT EFL+  R+   + GALL+ DE+Q G+GRTG  
Sbjct: 179 KRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR 237

Query: 299 WAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAV 358
           +A EH+GI PDI+TLAK L GG+P+G A++ E+VA ++  G HG+TF G+PL   A +A 
Sbjct: 238 FAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAA 297

Query: 359 LDKISNPAFLA----------SKLAR--NPHVKDVRGLGLIIGIEFDVSATP-VVDACRD 405
           +  +                  KL    +P +++VRG+GL++G+E    A P +    ++
Sbjct: 298 IRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKE 357

Query: 406 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
             +L L AG   V+R +PPL+I +++L++ VE +   L
Sbjct: 358 HRVLALQAG-PTVIRFLPPLVIEKEDLERVVEAVRAVL 394

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  562 bits (1451), Expect = 0.0
 Identities = 156/380 (41%), Positives = 232/380 (61%), Gaps = 16/380 (4%)

Query: 73  LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
           L+  Y R PV    GKG  LYD EG+EYLD  SGI VN+LGH      +A+ +Q   L H
Sbjct: 3   LMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLH 62

Query: 133 VSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191
           VSN+Y +  Q ELA +LV   + + +VFF+N+GTE+ EAAIK ARK+ R    +      
Sbjct: 63  VSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKN----KW 118

Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251
           +F+SF NSFHGRT G+L+ T +  +   FEP++PG ++ +  +I++  KL+   +TA + 
Sbjct: 119 KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDE-ETAGII 177

Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311
           +E IQGEGG+  A+++FL  L++ C +   LL+ DEVQ G+GRTG  +A++H+ + PD++
Sbjct: 178 IEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237

Query: 312 TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN------- 364
            LAK L GG+PIGA L  E+VA +   G HGSTF G+PL C A   V+D++         
Sbjct: 238 ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVRE 297

Query: 365 -PAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP 423
              +   KL +      V+G GL++G+E +      V    + GLL+     G V+R +P
Sbjct: 298 VGNYFKEKL-KELGKGKVKGRGLMLGLELERECKDYVLKALEKGLLINCTA-GKVLRFLP 355

Query: 424 PLIISEQELDQAVEILCKTL 443
           PLII ++ +D+A+ +L + L
Sbjct: 356 PLIIQKEHIDRAISVLREIL 375

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score =  501 bits (1293), Expect = e-178
 Identities = 136/394 (34%), Positives = 206/394 (52%), Gaps = 16/394 (4%)

Query: 63  KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
           K+++E         Y+  P+V++  +G  + D EG  Y+DL S  +    GH     I A
Sbjct: 1   KDIIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINA 60

Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
           ++DQAN +T  S  ++S       +++   +  + V   NTG EA E AIK AR++  + 
Sbjct: 61  LIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWA-YD 119

Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
               +    E +   ++FHGRTMGA++++S E Y+  F P++PG+  + YG++EA +  I
Sbjct: 120 VKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI 179

Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
            P  TAA  +EPIQGE GI      FL+   + C     L V DE+Q GLGRTG ++A +
Sbjct: 180 TP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACD 238

Query: 303 HYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
              + PD+  L K L GG+ PI  A     +      G HGSTF G+PL C  +IA L+ 
Sbjct: 239 WDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV 298

Query: 362 ISNPAFLA----------SKLAR--NPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLL 409
           +                  +L    NP + +VRG GL IGIE +  A P  +  + +GLL
Sbjct: 299 LEEEKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLFIGIELNEPARPYCEQLKAAGLL 358

Query: 410 VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
                  NV+R+ PPL+ISE++L+ A + +   L
Sbjct: 359 CKETH-ENVIRIAPPLVISEEDLEWAFQKIKAVL 391

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score =  497 bits (1283), Expect = e-175
 Identities = 134/410 (32%), Positives = 204/410 (49%), Gaps = 24/410 (5%)

Query: 60  RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +  ++ +  E K     Y+  PVVL   KG  +YD   + Y D  S  +    GH   + 
Sbjct: 27  KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNI 86

Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF- 178
           + A+++QA  LT  S  ++S+P     + L      D+V   NTG EANE A K  RK+ 
Sbjct: 87  LNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG 146

Query: 179 -QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237
            +    P++     + V   N+F GRT+G ++ ++ +   S F P  P  + V Y ++EA
Sbjct: 147 YEVKKIPENM---AKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEA 203

Query: 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
             + ++     A  VEPIQGE G+   +  +LQ + D C     L V DEVQ GLGRTG 
Sbjct: 204 LEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK 263

Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
           L    HY + PD++ L K L+GG  PI A L  + +   I  G+HGST+ G+PL  +  +
Sbjct: 264 LLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICV 323

Query: 357 AVLDKISNPAF--------------LASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDA 402
             L+ + N                 L  +L  +  V+DVRG GL+  IEF      V+D 
Sbjct: 324 EALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDI 383

Query: 403 C---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449
           C   +++GL+         +RL PPL I++++LD+  EI+ KT+   D  
Sbjct: 384 CLKLKENGLITRDVH-DKTIRLTPPLCITKEQLDECTEIIVKTVKFFDER 432

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score =  494 bits (1274), Expect = e-174
 Identities = 137/446 (30%), Positives = 208/446 (46%), Gaps = 30/446 (6%)

Query: 17  LSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGT 76
            S+  +L+R    +      + +A SV  +       +       + ++ E E K     
Sbjct: 2   FSKLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPT-------SDDIFEREYKYGAHN 54

Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
           Y+  PV L  GKG  L+D EGR+Y D  S  +    GH     + A+  Q + LT  S  
Sbjct: 55  YHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRA 114

Query: 137 YYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKF--QRHSNPDSKEPATEFV 194
           +Y+    E  + +       +V   NTG EA E A K ARK+          K    + V
Sbjct: 115 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYK---AKIV 171

Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254
               +F GRT+ A++ ++       F P MPG + + Y ++ A  + +Q    AA  VEP
Sbjct: 172 FAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEP 231

Query: 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA 314
           IQGE G+      +L  +R+ C     L + DE+Q GL RTG   A ++  + PDI+ L 
Sbjct: 232 IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLG 291

Query: 315 KPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA---- 369
           K L+GGL P+ A L  + +   I  G+HGST+ G+PL C  AIA L+ +           
Sbjct: 292 KALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK 351

Query: 370 ------SKLAR--NPHVKDVRGLGLIIGIEFD----VSATPVVDACRDSGLLVLTAGKGN 417
                 ++L +  +  V  VRG GL+  I         A  V    RD+GLL      G+
Sbjct: 352 LGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTH-GD 410

Query: 418 VVRLVPPLIISEQELDQAVEILCKTL 443
           ++R  PPL+I E EL +++EI+ KT+
Sbjct: 411 IIRFAPPLVIKEDELRESIEIINKTI 436

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  467 bits (1204), Expect = e-164
 Identities = 152/429 (35%), Positives = 218/429 (50%), Gaps = 61/429 (14%)

Query: 61  NNKEVMEAEKKLLVGTYNRA---PVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGD 116
            +++++E     L  +       P+V+  G+G  +YD +G +YLD +SGI VN LG    
Sbjct: 2   LSRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSH 61

Query: 117 ADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACS---FADRVFFSNTGTEANEAAI 172
            + IK  ++Q   L H + N +Y+IPQ+ELAK+LV  S   F  +VFFSN+GTEA EA+I
Sbjct: 62  PEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASI 121

Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVE 231
           K  +   R             ++F   FHGRT G+++LT+ +   RS   P MPGV  V 
Sbjct: 122 KVVKNTGRK----------YIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVP 171

Query: 232 YGNI--------------------------EATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265
           Y N                                L+ P + A +F EPIQGEGG     
Sbjct: 172 YPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPP 231

Query: 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIG 324
           K F   L+      G LLV DEVQ GLGRTG L+A E++   PD++TLAK L GG +PIG
Sbjct: 232 KNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIG 291

Query: 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--------PAFLASKLARNP 376
           A +  + +      G H +TF G+ L C     V+D + +            A +L    
Sbjct: 292 ATIFRKDLDFK--PGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEEL--QG 347

Query: 377 HVKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
              DVRG+GL  G+E+        ++      GLL+L AG  + +R++PPL+ISE+E  Q
Sbjct: 348 LADDVRGIGLAWGLEYNEKKVRDRIIGESFKRGLLLLPAG-RSAIRVIPPLVISEEEAKQ 406

Query: 435 AVEILCKTL 443
            ++IL K +
Sbjct: 407 GLDILKKVI 415

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  456 bits (1176), Expect = e-159
 Identities = 105/430 (24%), Positives = 160/430 (37%), Gaps = 51/430 (11%)

Query: 63  KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDA-EGREYLDLSSGIAVNALGHGDADWIK 121
             V E   + ++       + L    G  L DA  GR YLD+ + +A +ALG      + 
Sbjct: 18  DRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVD 77

Query: 122 AVVDQANVLTHVSNMY-----YSIPQIELAK---RLVACSFADRVFFSNTGTEANEAAIK 173
                A ++    N       YS+      +   R++       +FF   G  A E A+K
Sbjct: 78  DREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALK 137

Query: 174 FARKFQR---HSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNF 229
            A  ++     ++       T+ +    +FHGR+   L+LT +K    + F         
Sbjct: 138 AAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRID 197

Query: 230 VEY------------------GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF 271
             Y                      A  +   P   A    EPIQGEGG      EF   
Sbjct: 198 APYMRPGLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEFFAA 256

Query: 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEK 331
           +R+ CD+  ALL+FDEVQ G G TG  WA++   + PDI+   K       +    V E 
Sbjct: 257 MRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEV 316

Query: 332 VASAINY-GDHGSTFAGSPLVCNAAIAVLDKISNPAFLA----------SKL----ARNP 376
             +         ST+ G+      A  +L+ I                 ++L    A  P
Sbjct: 317 ADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFP 376

Query: 377 H-VKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD 433
             V D RG GL+             ++       ++VL AG  + VR  PPL +S  E+D
Sbjct: 377 AVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEID 435

Query: 434 QAVEILCKTL 443
            A+  +   L
Sbjct: 436 AAIAAVRSAL 445

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  452 bits (1165), Expect = e-158
 Identities = 136/428 (31%), Positives = 208/428 (48%), Gaps = 54/428 (12%)

Query: 61  NNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +NKE+M+   + +     +  P+     + C+++D EGREYLD + GIAV   GH     
Sbjct: 3   SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62

Query: 120 IKAVVDQANVLTHVS-NMYYSIPQIELAKRLVA---CSFADRVFFSNTGTEANEAAIKFA 175
           + AV  Q   L+H    +    P +EL + +       FA +     TG+EA E A+K A
Sbjct: 63  VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122

Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEYGN 234
           R   + S           ++F+ ++HGRT   LALT K + Y +    +   V    Y  
Sbjct: 123 RAATKRSG---------TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173

Query: 235 ----------IEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
                     I +  ++ +    P   AA+ +EP+QGEGG Y+++  F+Q LR  CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233

Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
            +L+ DEVQ G GRTG L+A E  G+ PD+ T AK +AGG P+       +V  A+  G 
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293

Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLA----------SKL----ARNPHVKDVRGLGL 386
            G T+AG+P+ C AA+ VL        L             L     ++P + DVRGLG 
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353

Query: 387 IIGIEFDVS----------ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435
           +I IE                 +V   RD GL++L+ G   NV+R++ PL I + ++ Q 
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413

Query: 436 VEILCKTL 443
           +EI+ +  
Sbjct: 414 LEIISQCF 421

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  444 bits (1144), Expect = e-154
 Identities = 122/437 (27%), Positives = 191/437 (43%), Gaps = 61/437 (13%)

Query: 59  GRNNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
           G  ++ +++ +   +        PV      G  + D +G   +DL SGIAV  +G+   
Sbjct: 21  GPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAP 80

Query: 118 DWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAIK 173
             ++AV  Q    TH   M       + + ++L          R    N+G+EA E A+K
Sbjct: 81  KVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVK 140

Query: 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEY 232
            AR                 V+F +++HGRT   +ALT+K   Y+  F P  P +     
Sbjct: 141 IARSHTHKPA---------VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPL 191

Query: 233 GN----------------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270
                                   I    K I     AAV +EPIQGEGG       FL 
Sbjct: 192 SYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLP 251

Query: 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTE 330
            L D C     + + DEVQ G  RTG ++A EH GI PD++  AK +AGGLP+ A     
Sbjct: 252 TLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRA 311

Query: 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP----------AFLASKL----ARNP 376
           ++  + +    G T+ G+P+ C AA+A ++ I +             +  +L    A + 
Sbjct: 312 EIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDD 371

Query: 377 HVKDVRGLGLIIGIEF--DVSATP-------VVDACRDSGLLVLTAGK-GNVVRLVPPLI 426
            + DVRG G +I +E     +  P       +      +G++VL+ G  GNVVR +PPL 
Sbjct: 372 RIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLS 431

Query: 427 ISEQELDQAVEILCKTL 443
           I +  L++ +++L + L
Sbjct: 432 IGDDLLNEGLDVLEEVL 448

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  439 bits (1131), Expect = e-152
 Identities = 131/432 (30%), Positives = 190/432 (43%), Gaps = 56/432 (12%)

Query: 59  GRNNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
           G  +  + E  +  +        PV      G  + DA+G  ++DL +GIAV  +G    
Sbjct: 24  GPRSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHP 83

Query: 118 DWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAIK 173
               A+ DQA   TH   M       +++A+ L A        R    N+G EA E AIK
Sbjct: 84  AVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIK 143

Query: 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEY 232
            AR                 V+F N++HGRT   +ALT+K   Y+S F P  P V  +  
Sbjct: 144 VARLATGRPA---------VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPA 194

Query: 233 GN-----------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA 275
                              I      I     AA+ +EPIQGEGG       FL  L   
Sbjct: 195 SYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAW 254

Query: 276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASA 335
             + G + + DEVQ G  RTG  +A EH GI PDI+T+AK +AGG+P+ A     ++  A
Sbjct: 255 ASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDA 314

Query: 336 INYGDHGSTFAGSPLVCNAAIAVLDKISNP----------AFLASKL----ARNPHVKDV 381
           +  G  G T+ G+P+ C AA+A L  +             A + S+L         + +V
Sbjct: 315 VYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV 374

Query: 382 RGLGLIIGIEF--DVSATP-------VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQE 431
           RG G ++ IE     +  P       +       G+L+LT G  GNV+RL+PPL+I +  
Sbjct: 375 RGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDL 434

Query: 432 LDQAVEILCKTL 443
           LD+ +  L   +
Sbjct: 435 LDEGITALSDII 446

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  415 bits (1068), Expect = e-143
 Identities = 113/430 (26%), Positives = 188/430 (43%), Gaps = 60/430 (13%)

Query: 62  NKEVMEAEKKLL--VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
            K + + +   +  +      P+ ++ G+G +L +  GRE +DLS      +LG+G    
Sbjct: 5   TKALYDRDGAAIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAI 64

Query: 120 IKAVVDQANVLTHVSNMY-YSIPQIELAKRLVAC---SFADRVFFSNTGTEANEAAIKFA 175
           + AV   A      + +   + P + LA+RL+A        +++F ++G++ANEAA +  
Sbjct: 65  VAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI 124

Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN- 234
            K    S           ++F  ++HG T+G++A +              G+  + Y + 
Sbjct: 125 VKATGRSG---------VIAFAGAYHGCTVGSMAFSGHSVQA--DAAKADGLILLPYPDP 173

Query: 235 ----------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD 278
                           +      +  G   A F+EPIQ +GG+      FL+   D C  
Sbjct: 174 YRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRA 233

Query: 279 AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY 338
            G L+V DEV+ GL R+G L   EH G  PDI+ L K L GGLP+ A +   ++    + 
Sbjct: 234 HGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCAS- 292

Query: 339 GDHGSTFAGSPLVCNAAIAVLDKISNP----------AFLASKL----ARNPHVKDVRGL 384
                T  G+P+   A +AVL+ I               L   L     R+P + D+RG 
Sbjct: 293 AFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR 352

Query: 385 GLIIGIEF---DVSATP-------VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELD 433
           GL  G+E      S  P       ++      GL+V   G  GNV+   PPL I+E ++ 
Sbjct: 353 GLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIH 412

Query: 434 QAVEILCKTL 443
           +A+++L +  
Sbjct: 413 KALDLLDRAF 422

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  412 bits (1061), Expect = e-142
 Identities = 115/436 (26%), Positives = 178/436 (40%), Gaps = 64/436 (14%)

Query: 61  NNKEVMEAEKKLLV-GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           ++       +  LV       P+++   KG  +YDA+GR  LD +SG     LGH   + 
Sbjct: 5   DDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEI 64

Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARK 177
           +  + + A  L H+ +   S P ++LA RL   +     R    +TG E+NEAAI+ A+ 
Sbjct: 65  VSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL 124

Query: 178 F-QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN-- 234
              ++          E V F  S+HG T  A + T     R    P   G   +      
Sbjct: 125 VTGKY----------EIVGFAQSWHGMTGAAASATYSA-GRKGVGPAAVGSFAIPAPFTY 173

Query: 235 ------------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276
                                       G  AA   EPI   GGI      ++  L+  C
Sbjct: 174 RPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKC 233

Query: 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI 336
           +  G LL+ DE Q G+GRTG ++A +  G+ PDI+TL+K L  GLP+ A + +  +    
Sbjct: 234 EARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERA 293

Query: 337 NYG--DHGSTFAGSPLVCNAAIAVLDKISNP----------AFLASKL----ARNPHVKD 380
           +       +T    PL     + VLD +               L   L     R   + D
Sbjct: 294 HELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD 353

Query: 381 VRGLGLIIGIEF---DVSATP-------VVDACRDSGLLV--LTAG-KGNVVRLVPPLII 427
           VRG GL++G+E      +  P       +   C + GL +  +     G V R+ PPL +
Sbjct: 354 VRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTV 413

Query: 428 SEQELDQAVEILCKTL 443
           SE E+D  + +L + +
Sbjct: 414 SEDEIDLGLSLLGQAI 429

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  407 bits (1049), Expect = e-139
 Identities = 104/451 (23%), Positives = 159/451 (35%), Gaps = 72/451 (15%)

Query: 59  GRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD 118
           G  ++E+M+    +               +G  L D +G   LDL S I+   +G+    
Sbjct: 24  GPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPA 83

Query: 119 WIKAVVDQANVLTHVSN-MYYSIPQIELAKRL------VACSFADRVFFSNTGTEANEAA 171
            +K V    NV T ++      +P     ++L      VA     ++     G+ +NE A
Sbjct: 84  LVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENA 143

Query: 172 IKFARKFQRH-----------------SNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
            K    + R                   N     P    +SF  +FHGRTMG LA T  +
Sbjct: 144 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK 203

Query: 215 ------------------HYRSPFEPVMPGVNFVEYGNIEATRKLIQ-----PGKTAAVF 251
                               + P E  +      E   +E    LI          A + 
Sbjct: 204 AIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII 263

Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPD 309
           VEPIQ EGG   A+ +F + LRD     G   + DEVQ G G TG  WAHEH+G+    D
Sbjct: 264 VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPAD 323

Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP---- 365
           +MT +K +  G                      +T+ G P        V++ I       
Sbjct: 324 VMTFSKKMMTGGFFHKEEFRPNAP-----YRIFNTWLGDPSKNLLLAEVINIIKREDLLS 378

Query: 366 ------AFLASKL----ARNPH-VKDVRGLGLIIGIEFDVSAT--PVVDACRDSGLLVLT 412
                   L + L    AR P  +  VRG G     +    +    ++   R+ G+++  
Sbjct: 379 NAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGG 438

Query: 413 AGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
            G    +R  P L+  +      + I    L
Sbjct: 439 CG-DKSIRFRPTLVFRDHHAHLFLNIFSDIL 468

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  335 bits (862), Expect = e-111
 Identities = 123/423 (29%), Positives = 192/423 (45%), Gaps = 61/423 (14%)

Query: 79  RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
            +  V A  +GC + D +G+ YLD  SG+     G+G  +  +A   Q   L++      
Sbjct: 30  NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQS 89

Query: 139 SIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
             P I+LA++L      +  +FFSN+G+EANE A K AR++        +    +F+S  
Sbjct: 90  HEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHR---YKFMSRY 146

Query: 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV---------------EYG-----NIEA 237
             +HG TM  +A T +   R  +EP   G   V                Y       ++ 
Sbjct: 147 RGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDR 206

Query: 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
                     AA  +EPI   GGI  A +++++ + + C   GALL+ DEV CG GRTG 
Sbjct: 207 VMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK 266

Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD------HGSTFAGSPL 350
            +   +Y + PDI+T+AK +    LP+ A  V  ++  A           H +TF G+P 
Sbjct: 267 AFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPA 326

Query: 351 VCNAAIAVLDKISN-----------PAF---LASKLARNPHVKDVRGLGLIIGIE----- 391
            C  A+  L+ I N                 L  ++  +P V D+RG GL++GIE     
Sbjct: 327 ACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDK 386

Query: 392 -----FDVSATP-VVDACRDSGLLV-----LTAGKGNVVRLVPPLIISEQELDQAVEILC 440
                 D      VV+AC++ GL++      TAG  N++ L PPL+IS +E+   +  L 
Sbjct: 387 ETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLK 446

Query: 441 KTL 443
             +
Sbjct: 447 TAM 449

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  321 bits (826), Expect = e-106
 Identities = 101/427 (23%), Positives = 173/427 (40%), Gaps = 63/427 (14%)

Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVS 134
                 ++A G+G  ++D  GR+ +D  +G+    +G+G      A+  QA  L   H  
Sbjct: 30  GESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAY 89

Query: 135 NMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
             + +   I LAK ++  +     RV+F  +G++ANE  IK    +        K    +
Sbjct: 90  VGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEK---KK 146

Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------EYG--- 233
            +S    +HG  +   +LT  + + + F+     V                   ++    
Sbjct: 147 IISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHC 206

Query: 234 --NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
              +E       P   AA   EPI G GGI      + + ++        LLV DEV  G
Sbjct: 207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTG 266

Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGS 343
            GR G ++  +HYGI PD++T+AK L     P+   +V ++V   +  G        HG 
Sbjct: 267 FGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW 326

Query: 344 TFAGSPLVCNAAIAVLDKISN-----------PAF---LASKLARNPHVKDVRGLGLIIG 389
           T++  P+   A +A L+ I               F   LA  +  + +V +VRG G++  
Sbjct: 327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAA 386

Query: 390 IE----------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
           +E          FD S      V  A   SG++     +G+++   PPL ++ ++ D  V
Sbjct: 387 VEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVV 446

Query: 437 EILCKTL 443
                 +
Sbjct: 447 SKTADAV 453

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  312 bits (803), Expect = e-103
 Identities = 117/430 (27%), Positives = 190/430 (44%), Gaps = 71/430 (16%)

Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
             Y+  P+++ SG G K+ D  G+EY D  S + +N  GH   +   A+  Q   + H  
Sbjct: 21  KDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHS- 79

Query: 135 NMYYSI---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
                +   P  +LA+ L+  S     RVF+S++G EA E A+K A ++ ++     K  
Sbjct: 80  -TLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEK-- 136

Query: 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV--------EYGN------- 234
             +F++  N +HG T+GA+++ S E +   + P+M              E G+       
Sbjct: 137 -QKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQ 195

Query: 235 -IEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
            +    +L++    + AA+ +E  +QG  G+    + +L  +R+ C     L++ DEV  
Sbjct: 196 CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT 255

Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------H 341
           G GRTG ++A EH  + PD+M   K + GG LPI     TE +  A  Y D        H
Sbjct: 256 GFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF-YDDYENLKTFFH 314

Query: 342 GSTFAGSPLVCNAAIAVLDKI----------SNPAFLASKLAR---NPHVKDVRGLGLII 388
           G ++ G+ L C  A+  L                  L   L      PHV D+R LG + 
Sbjct: 315 GHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMC 374

Query: 389 GIEFDVS-------------ATPVVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQELD 433
           G E   S                V    R+ G+L   L    G+V+  +PPL  + +EL 
Sbjct: 375 GAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL----GDVIAFLPPLASTAEELS 430

Query: 434 QAVEILCKTL 443
           + V I+ + +
Sbjct: 431 EMVAIMKQAI 440

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  311 bits (798), Expect = e-102
 Identities = 109/424 (25%), Positives = 176/424 (41%), Gaps = 65/424 (15%)

Query: 79  RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNM 136
           R  VV+  G+G  + D  GR YLD +SG+     G      I A   Q       H    
Sbjct: 42  RGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFG 101

Query: 137 YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
             S   + L+++LV  S  D  RVF++N+G+EAN+  +K             K    + +
Sbjct: 102 RMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQK---RKIL 158

Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----------------EYG----- 233
           +  N++HG T  + ++T K  Y S F   +PG   +                ++      
Sbjct: 159 TRWNAYHGVTAVSASMTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAR 217

Query: 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
            +E T +       A  F EP+ G GG+    K + Q +          ++ DEV CG G
Sbjct: 218 ELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFG 277

Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGSTF 345
           RTG  W    Y   PD +  +K L  G  P+GA ++  +++  +           HG T 
Sbjct: 278 RTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTA 337

Query: 346 AGSPLVCNAAIAVLDKISN-----------PAFLA--SKLARNPHVKDVRGLGLIIGIE- 391
           +G P+ C  A+  +D + N           P F      +A  P++ + RG+G +  +E 
Sbjct: 338 SGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEA 397

Query: 392 ---------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
                    FD +   +  + + C D GL+      G  V L PP I++E ++D+  + L
Sbjct: 398 VKDKASKTPFDGNLSVSERIANTCTDLGLICRPL--GQSVVLCPPFILTEAQMDEMFDKL 455

Query: 440 CKTL 443
            K L
Sbjct: 456 EKAL 459

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  308 bits (791), Expect = e-101
 Identities = 116/420 (27%), Positives = 181/420 (43%), Gaps = 57/420 (13%)

Query: 78  NRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY 137
           ++   V   G+G  LYD  GR YLD SSG  V  +GHG A+  + +  QA  L  V    
Sbjct: 9   SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQ 68

Query: 138 YS-IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
           +S     E A RL         R +  + G+EA E+A+K AR++        +    + +
Sbjct: 69  FSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGR---FKVI 125

Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGN-------------IEATRKL 241
           +   S+HG ++G+LA +     R  + P+M    + +                + A  + 
Sbjct: 126 TRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLER 185

Query: 242 IQPGKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
             P   AA   EP+ G      +    + + +RD CD+AG + + DEV  G+GR G   A
Sbjct: 186 EGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLA 245

Query: 301 HEHY-GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD----HGSTFAGSPLVCNA 354
              + G+ PDI  L K LA G  P+   L   +V   +  G     HG T+AG P+   A
Sbjct: 246 LSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAA 305

Query: 355 AIAVLDKISN-----------PAF---LASKLARNPHVKDVRGLGLIIGIE--------- 391
            ++VLD +                   L +  AR P +  VRG GL++G+          
Sbjct: 306 GLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQA 365

Query: 392 FDVS--ATPVVDACRDSGLLV------LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           F+    A+ +  A    GL+          G+G+ + L PPL I+  E+D  + +L   L
Sbjct: 366 FETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGAL 425

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  305 bits (783), Expect = e-100
 Identities = 102/421 (24%), Positives = 175/421 (41%), Gaps = 59/421 (14%)

Query: 77  YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
           + R P ++ + +G  L D +GR+  D  SG+     GH   +  +AV  Q + L +    
Sbjct: 29  FLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGF 88

Query: 137 YYS-IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
            Y      +LA+++   +  +   VFF+++G+E    A+K  R + R     +K   T+ 
Sbjct: 89  QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATK---TKM 145

Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE----YGN--------------I 235
           +     +HG  +   +L      R  F   M  V+ +       N               
Sbjct: 146 IGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALA 205

Query: 236 EATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
           +   KLI+       AAVFVEP+ G  G+    + +L+  R+ C+    LLVFDEV  G 
Sbjct: 206 DELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGF 265

Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD---------HG 342
           GRTG ++  + +G+ PD+M +AK +  G +P+GA + + ++                 HG
Sbjct: 266 GRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHG 325

Query: 343 STFAGSPLVCNAAIAVLDKISN-----------PAFLA--SKLARNPHVKDVRGLGLIIG 389
            T++  P+ C A +A L  +             P F      +    +V D+R  GL   
Sbjct: 326 YTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGA 385

Query: 390 IEF---DVSATP----VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 442
           I+    D  A         A   +G  V     G+ ++  P      Q+LD+  + + + 
Sbjct: 386 IQIAPRDGDAIVRPFEAGMALWKAGFYVRFG--GDTLQFGPTFNSKPQDLDRLFDAVGEV 443

Query: 443 L 443
           L
Sbjct: 444 L 444

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  302 bits (775), Expect = 1e-98
 Identities = 109/421 (25%), Positives = 180/421 (42%), Gaps = 61/421 (14%)

Query: 79  RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNM 136
               V+  G+G  L+D+EG + +D  +G+    +G+G  D+ +A   Q   L   +    
Sbjct: 31  AGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFK 90

Query: 137 YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
                 +EL+  L   + A   RVF++N+G+E+ +  I+  R++        K      +
Sbjct: 91  TTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEK---KTLI 147

Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV---------------EYG-----N 234
              N +HG T+G  +L   ++     +  +PG+  +               E+G      
Sbjct: 148 GRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARW 207

Query: 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
           +E     I   K AA   EPIQG GG+      +   +   C     LLV DEV CG GR
Sbjct: 208 LEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGR 267

Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD---HGSTFAGSPL 350
           TG  + H+H+G  PD+ T AK L+ G LPIGA  V ++VA  +  G    HG T++G P+
Sbjct: 268 TGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPV 327

Query: 351 VCNAAIAVLDKISN------------PAF---LASKLARNPHVKDVRGLGLIIGIE---- 391
               A A +  + +            P          +R  HV DVRG+G++        
Sbjct: 328 CAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKN 387

Query: 392 ------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 442
                 F       T   D    + L++     G+ +   PPL+++  E+D+ + +  + 
Sbjct: 388 KAKRELFPDFGEIGTLCRDIFFRNNLIMRAC--GDHIVSAPPLVMTRAEVDEMLAVAERC 445

Query: 443 L 443
           L
Sbjct: 446 L 446

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  293 bits (752), Expect = 5e-95
 Identities = 107/420 (25%), Positives = 182/420 (43%), Gaps = 61/420 (14%)

Query: 79  RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNM 136
               V+   +G  L D+EG E LD  +G+    +G+G  +  +    Q   L   +    
Sbjct: 36  EGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFK 95

Query: 137 YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
              +P I LA++L   +  D   VFF+  G+EAN+  I+  R + ++     K   T  +
Sbjct: 96  TTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEK---TVII 152

Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV---------------EYG-----N 234
           S  N++HG T+ + AL       +    ++P V+ +               E+G      
Sbjct: 153 SRKNAYHGSTVASSALGGMAGMHAQS-GLIPDVHHINQPNWWAEGGDMDPEEFGLARARE 211

Query: 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
           +E     +   + AA   EP+QG GG+  A   +   ++  CD    LL+ DEV CG GR
Sbjct: 212 LEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGR 271

Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--HGSTFAGSPLV 351
           TG  +  +  GI P IMT+AK L+ G  PIG ++V ++VA  I   +  HG T++G P+ 
Sbjct: 272 TGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVA 331

Query: 352 CNAAIAVLD------------KISNPAFLA--SKLARNPHVKDVRGLGLIIGIE------ 391
              A+  L              ++ P        L  +P V + + +G++  I       
Sbjct: 332 AAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKA 391

Query: 392 ----FDVS----ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
               F            + C  + L++     G+ + + PPL+I+  E+D+    + K+L
Sbjct: 392 SRAKFASEPGTIGYICRERCFANNLIMRHV--GDRMIISPPLVITPAEIDEMFVRIRKSL 449

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  292 bits (751), Expect = 8e-95
 Identities = 98/422 (23%), Positives = 180/422 (42%), Gaps = 62/422 (14%)

Query: 79  RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
            A  VL   +G  ++  +GR  +D  +G+    +G+G  + + A+  QA VL + S  Y 
Sbjct: 35  SAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYM 94

Query: 139 S-IPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
           +  P   LA+++   +  D  R+FF+  G+ A ++A++F+  +        K      + 
Sbjct: 95  ATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQK---KRIIV 151

Query: 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV--------------EYG-----NIE 236
             + +HG T    A T +      F+     ++F+               +        E
Sbjct: 152 RYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFE 211

Query: 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
              + + P   AA   EPI   GG+      +    +  C+    L + DEV  G GR G
Sbjct: 212 DRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG 271

Query: 297 YLWAHEH-YGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGSTFAG 347
             +A E  +G+ PDI+T AK +  G +P+G   ++E V + I+  +       +G T++ 
Sbjct: 272 EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSN 331

Query: 348 SPLVCNAAIAVLDKISN-----------PAFLAS--KLARNPHVKDVRGLGLIIGIE--- 391
            P+ C AA+A ++ +               F A+   L   P V + R +GL+  ++   
Sbjct: 332 QPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLL 391

Query: 392 -------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 441
                            + + C + GL+V     G++  + PPLIIS  ++D+ V I+ +
Sbjct: 392 DPTRADGTAEDKAFTLKIDERCFELGLIVRPL--GDLCVISPPLIISRAQIDEMVAIMRQ 449

Query: 442 TL 443
            +
Sbjct: 450 AI 451

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  290 bits (745), Expect = 2e-94
 Identities = 119/409 (29%), Positives = 192/409 (46%), Gaps = 57/409 (13%)

Query: 80  APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139
               + S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV  M+  
Sbjct: 25  PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGG 82

Query: 140 I---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
           I   P IEL ++LVA +    + VF +++G+ A E A+K A ++ +       E    F+
Sbjct: 83  ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFL 138

Query: 195 SFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEY-----------GNIEATRKLI 242
           +F N +HG T GA+++   ++   S ++  +P   F               ++    +L+
Sbjct: 139 TFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLM 198

Query: 243 Q--PGKTAAVFVEPI-QGEGG--IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
                + AAV +EPI QG GG  +Y    E+L+ +R  CD  G LL+ DE+  G GRTG 
Sbjct: 199 AAHRHEIAAVIIEPIVQGAGGMRMYHP--EWLKRIRKICDREGILLIADEIATGFGRTGK 256

Query: 298 LWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLV 351
           L+A EH  I PDI+ L K L GG + + A L T +VA  I+ G+     HG TF G+PL 
Sbjct: 257 LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA 316

Query: 352 CNAAIAVLDKISNPAFLA-------------SKLARNPHVKDVRGLGLIIGIEF--DVSA 396
           C AA A L  + +  +               +       V DVR LG I  +E    V+ 
Sbjct: 317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNM 376

Query: 397 TPVVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
             +     + G+ +       G ++ L+PP II  Q+L +    + + +
Sbjct: 377 AALQKFFVEQGVWIRPF----GKLIYLMPPYIILPQQLQRLTAAVNRAV 421

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score =  284 bits (728), Expect = 1e-91
 Identities = 121/416 (29%), Positives = 175/416 (42%), Gaps = 55/416 (13%)

Query: 77  YNRAPVVLASGKGCKLY---DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV 133
              +PVV  +  G  L    D +  E LD  S       GHG     +A+  Q  V+ HV
Sbjct: 51  EAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV 110

Query: 134 SNMYYSI---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
             M+  +   P   LAK LV  + A  D VFFS++G+ + E A K A ++ R      K 
Sbjct: 111 --MFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGK- 167

Query: 189 PATEFVSFTNSFHGRTMGALALTSKE-HYRSPFEPVMPGVNFVEY-------GNIEATRK 240
                +++   +HG T  A+++        S +  V+    F              A   
Sbjct: 168 --RRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEA 225

Query: 241 LIQ--PGKTAAVFVEPI-QGEGG--IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
            +    G+ AAV VEP+ QG GG   +     +L  LRD C     LL+FDE+  G GRT
Sbjct: 226 QLAQHAGELAAVVVEPVVQGAGGMRFHDP--RYLHDLRDICRRYEVLLIFDEIATGFGRT 283

Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSP 349
           G L+A +H G+ PDIM + K L GG L + A L T  VA  I+ G      HG TF  +P
Sbjct: 284 GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANP 343

Query: 350 LVCNAAIAVLDKISNPAFLA-------------SKLARNPHVKDVRGLGLIIGIEF--DV 394
           L C  ++A ++ +    +                     P V DVR  G I  IE    V
Sbjct: 344 LACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPV 403

Query: 395 SATPVVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448
                  A  D G+ +        N+V  +PP I +  E+ Q    + +   ++ S
Sbjct: 404 DLAVATPAALDRGVWLRPF----RNLVYAMPPYICTPAEITQITSAMVEVARLVGS 455

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score =  245 bits (626), Expect = 4e-73
 Identities = 82/477 (17%), Positives = 155/477 (32%), Gaps = 120/477 (25%)

Query: 79  RAPVVLASGKGCKLYDAEG----REYLDLSSGIAVNALGHGDADWI-KAVVDQANVLTHV 133
              +    G+   +Y A       +  D  +              + + +   A    HV
Sbjct: 357 VTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHV 416

Query: 134 SNMYYSI---PQIELAKRLVA---CSFADRVFFSNTGTEANEAAIKFARKFQR------H 181
             M+      P ++ A+ L+      +A RV+FS+ G+ A E A+K A +          
Sbjct: 417 --MFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCE 474

Query: 182 SNPDSKEPATEFVSFTNSFHG---------------RTMGALALTSK------------- 213
           +  + K    + ++   S+HG                 +     T +             
Sbjct: 475 ATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 534

Query: 214 --------EHYRSPFEPVMPGVNFVEYGN-------------------IEATRKLIQPGK 246
                   E +           +  E  +                   ++    + Q   
Sbjct: 535 GSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAH 594

Query: 247 TAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
             A+ +EP+  G GG++     F + L + C +    ++FDEV  G  R G     E  G
Sbjct: 595 VGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLG 654

Query: 306 IFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-------HGSTFAGSPLVCNAAIA 357
             PDI   AK L GG +P+   L T+ V  +   GD       HG +++   + C  A  
Sbjct: 655 CKPDIACFAKLLTGGMVPLAVTLATDAVFDSF-SGDSKLKALLHGHSYSAHAMGCATAAK 713

Query: 358 VLD-------------------KISNPAFLASKLARNPHVKDVRGLGLIIGIE------- 391
            +                    ++ +   +   ++ +  V+ V  +G +  +E       
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRELWDEELVQQ-ISSHSAVQRVVVIGTLFALELKADASN 772

Query: 392 ---FDVSATPVVDACRDSGLLV--LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
                + A  ++   R+ G+    L    GNV+ L+     S +   + +  L K L
Sbjct: 773 SGYASLYAKSLLIMLREDGIFTRPL----GNVIYLMCGPCTSPEICRRLLTKLYKRL 825

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score =  162 bits (411), Expect = 5e-45
 Identities = 94/382 (24%), Positives = 135/382 (35%), Gaps = 70/382 (18%)

Query: 20  SGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNN---KEVMEAEKKLLVGT 76
           SG + R    N     P  + AS   E   A   +     R+N       E  ++ + G 
Sbjct: 12  SGLVPRGSHMNEPIGEPGRSPASDTAEKAQAIAAARNTFARDNPVSAGHHERARRSMPGG 71

Query: 77  YN---RA----PVVLASGKGCKLYDAEGREYLD--LSSGIAVNALGHGDADWIKAVVDQA 127
                      P+V+A G G +  D +G  Y++        +   GH       AV    
Sbjct: 72  NTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGL--FGHSHPVIRAAVERAL 129

Query: 128 NVLTHVSNMYYSIP---QIELAKRLVAC--SFADRVFFSNTGTEANEAAIKFARKFQRHS 182
            V  +      S     +   A+ +     S  D V F+N+GTEAN  A+  A       
Sbjct: 130 AVGLN-----LSTQTENEALFAEAVCDRFPS-IDLVRFTNSGTEANLMALATATAITGRK 183

Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF--------VEYGN 234
                      ++F   +HG   G L   S                           Y +
Sbjct: 184 ---------TVLAFDGGYHG---GLLNFAS------------GHAPTNAPYHVVLGVYND 219

Query: 235 IEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
           +E T  L++      AA+ VEP+ G GG   A + FL  LR      GALL+FDEV    
Sbjct: 220 VEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-- 277

Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA----ALVTEKVASAIN---YGDHGSTF 345
            R     A E  GI  D+ TL K + GG+  GA      + E+   A +      H  TF
Sbjct: 278 SRLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFA--HAGTF 335

Query: 346 AGSPLVCNAAIAVLDKISNPAF 367
             + L  +A  A L +I     
Sbjct: 336 NNNILTMSAGHAALTQIYTRQA 357

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score =  153 bits (390), Expect = 4e-42
 Identities = 78/342 (22%), Positives = 122/342 (35%), Gaps = 63/342 (18%)

Query: 61  NNKEVMEAEKKLLVGTYN---RA----PVVLASGKGCKLYDAEGREYLD--LSSGIAVNA 111
            +    +  + ++        RA     + ++  +G    D +G  YLD     G  V  
Sbjct: 13  GSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALV-- 70

Query: 112 LGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTGTEA 167
           LGHG      A+ +  +         Y+     ++  A+R+VA      ++ F+ +GTE 
Sbjct: 71  LGHGHPRVNAAIAEALSHGVQ-----YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTET 125

Query: 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----MGALALTSKEHYRSPFEPV 223
              A++ AR F               + F   +HG       G  +              
Sbjct: 126 TLLALRVARAFTGRR---------MILRFEGHYHGWHDFSASGYNSHF--------DGQP 168

Query: 224 MPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273
            PGV          +   +IE  R++        AA   EP+    G+   +  FL+   
Sbjct: 169 APGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGA 228

Query: 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA----ALVT 329
           +     GAL + DEV  G  R G         + PD+  LAK  AGGLP G       V 
Sbjct: 229 ELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVM 287

Query: 330 EKVASAINYGD----HGSTFAGSPLVCNAAIAVLDKISNPAF 367
             ++      D    H  TF G+P+   AAIA +D I     
Sbjct: 288 GVLSRG---SDRKVLHQGTFTGNPITAAAAIAAIDTILEDDV 326

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score =  149 bits (380), Expect = 8e-41
 Identities = 91/352 (25%), Positives = 144/352 (40%), Gaps = 78/352 (22%)

Query: 61  NNKEVMEAEKKLLVGTYN---RA--------PVVLASGKGCKLYDAEGREYLD--LSSGI 107
            ++ + +   + +VG  N   R+        P+ +  GKG   +D +G +Y+D   + G 
Sbjct: 7   KSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGP 66

Query: 108 AVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC--SFADRVFFSN 162
            +   GH      KA+   A          Y  P   +++ AK L     +  D+V F N
Sbjct: 67  II--TGHAHPHITKAITTAAENGVL-----YGTPTALEVKFAKMLKEAMPA-LDKVRFVN 118

Query: 163 TGTEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEH 215
           +GTEA    I+ AR +  R          T+ + F   +HG +   L        T    
Sbjct: 119 SGTEAVMTTIRVARAYTGR----------TKIMKFAGCYHGHSDLVLVAAGSGPST---- 164

Query: 216 YRSPF-EPVMPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSA 264
                  P   GV  +       V + N+E  ++ +     + AA+ VEPI G  GI   
Sbjct: 165 ----LGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEP 220

Query: 265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIG 324
              FL+ + +   +AGAL+++DEV     R  Y  A +  G+ PD+  L K + GGLPIG
Sbjct: 221 KPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGLPIG 279

Query: 325 A----ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAF 367
           A      + E+VA        G      T AG+P    + IA L+ +     
Sbjct: 280 AYGGKKEIMEQVAPL------GPAYQAGTMAGNPASMASGIACLEVLQQEGL 325

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score =  148 bits (377), Expect = 2e-40
 Identities = 85/348 (24%), Positives = 132/348 (37%), Gaps = 73/348 (20%)

Query: 61  NNKEVMEAEKKLLVGTYN---RA-----PVVLASGKGCKLYDAEGREYLD--LSSGIAVN 110
            ++ + E  K+L  G  N   RA     P  +  G+G  LY  +G   +D  L+ G  + 
Sbjct: 11  KSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLI- 69

Query: 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC--SFADRVFFSNTGT 165
            LGH     ++AV +            Y  P   ++ LA++++         + F N+GT
Sbjct: 70  -LGHKHPRVLEAVEEALARGWL-----YGAPGEAEVLLAEKILGYVKR-GGMIRFVNSGT 122

Query: 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHYRSP 219
           EA   AI+ AR +               + F   +HG     L      A          
Sbjct: 123 EATMTAIRLARGYTGRD---------LILKFDGCYHGSHDAVLVAAGSAAAH-------- 165

Query: 220 F-EPVMPGV--NF------VEYGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYSATKEF 268
           +  P   GV            Y ++EA  ++      + A V VEP+    G+    +EF
Sbjct: 166 YGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREF 225

Query: 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA--- 325
           L  L+    ++GALL+ DEV  G  R G   A  ++ I  DI+ L K + GG P+GA   
Sbjct: 226 LAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAG 284

Query: 326 -ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAF 367
              V   +         G      TF   P+   A +A L  +     
Sbjct: 285 SREVMSLLTPQ------GKVFNAGTFNAHPITMAAGLATLKALEEEPV 326

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score =  147 bits (374), Expect = 6e-40
 Identities = 95/350 (27%), Positives = 140/350 (40%), Gaps = 75/350 (21%)

Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIA 108
            + E+  A +KL+ G  +   RA       P+V    K    +D +G  Y+D   + G A
Sbjct: 5   KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64

Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTG 164
           +   GH   + I+A+              +  P   +  LA+ +       + V F N+G
Sbjct: 65  I--CGHAHPEVIEALKVAME-----KGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSG 117

Query: 165 TEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHYR 217
           TEA  A ++  R +  R           + + F   +HG     L        T      
Sbjct: 118 TEACMAVLRIMRAYTGR----------DKIIKFEGCYHGHADMFLVKAGSGVAT------ 161

Query: 218 SPF-EPVMPGV--NF------VEYGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYSATK 266
                P  PGV            Y ++EA + L    PG+ A V +EPI G  G      
Sbjct: 162 --LGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 219

Query: 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA- 325
            FL+ LR+   +  ALLVFDEV  G  R  Y    E +G+ PD+ TL K + GGLP+GA 
Sbjct: 220 GFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAY 278

Query: 326 ---ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAF 367
                + + VA A      G      T +G+PL   A I  L+ +  P  
Sbjct: 279 GGKREIMQLVAPA------GPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score =  146 bits (370), Expect = 2e-39
 Identities = 91/350 (26%), Positives = 146/350 (41%), Gaps = 75/350 (21%)

Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIA 108
            ++ +    ++L+ G  N   RA       P+ +    G  L+D +G+ Y+D   S G  
Sbjct: 6   KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPM 65

Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTG 164
           +  LGH      +AV++          + +  P   ++++A+ +       D V   N+G
Sbjct: 66  I--LGHNHPAIRQAVIEAVE-----RGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSG 118

Query: 165 TEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHYR 217
           TEA  +AI+ AR +  R           + + F   +HG     L      ALT      
Sbjct: 119 TEATMSAIRLARGYTGR----------DKIIKFEGCYHGHADCLLVKAGSGALT------ 162

Query: 218 SPF-EPVMPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATK 266
               +P  PGV  +F        Y ++ + R+  +  P + A + VEP+ G         
Sbjct: 163 --LGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLP 220

Query: 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA- 325
           EFL  LR  CD+ GALL+ DEV  G  R     A ++Y + PD+  L K + GG+P+GA 
Sbjct: 221 EFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAF 279

Query: 326 ---ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAF 367
                V   +A        G      T +G+P+   A  A L +IS    
Sbjct: 280 GGRREVMNALAPT------GPVYQAGTLSGNPIAMAAGFACLTEISQVGV 323

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score =  141 bits (359), Expect = 7e-38
 Identities = 95/351 (27%), Positives = 145/351 (41%), Gaps = 78/351 (22%)

Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIA 108
            +    E  + L+ G  N   RA       P+ +  GKG K+YD +G EY+D   S G  
Sbjct: 6   KSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPL 65

Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC--SFADRVFFSNT 163
           +   GH +   ++A+   A          +  P   + +LAK ++    S  + V   N+
Sbjct: 66  I--HGHANDRVVEALKAVAE-----RGTSFGAPTEIENKLAKLVIERVPS-IEIVRMVNS 117

Query: 164 GTEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHY 216
           GTEA  +A++ AR +  R           + + F   +HG     L        T     
Sbjct: 118 GTEATMSALRLARGYTGR----------NKILKFIGCYHGHGDSLLIKAGSGVAT----- 162

Query: 217 RSPF-EPVMPGV--NF------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSAT 265
                 P  PGV          V Y ++E+ +   +      A V VEP+ G  G+    
Sbjct: 163 ---LGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQ 219

Query: 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA 325
             FL+ LR+  +  GALL+FDEV  G  R  Y     +YG+ PD+  L K + GGLP+GA
Sbjct: 220 PGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGA 278

Query: 326 ----ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAF 367
               A +  +VA +      G      T +G+PL   A    L ++  P  
Sbjct: 279 YGGKAEIMRQVAPS------GPIYQAGTLSGNPLAMAAGYETLVQL-TPES 322

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score =  139 bits (352), Expect = 5e-37
 Identities = 98/358 (27%), Positives = 151/358 (42%), Gaps = 76/358 (21%)

Query: 61  NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDL--SSGIA 108
            ++   +  K+ + G  +   RA       P  L  G+G  ++DA+G  YLD   S G  
Sbjct: 5   ISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPL 64

Query: 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVAC-SFADRVFFSNTG 164
           +  LGH     +  V +          + +  P   ++ LAK++     F D V F N+G
Sbjct: 65  I--LGHAHPKVLARVRETLE-----RGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSG 117

Query: 165 TEANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL------ALTSKEHYR 217
           TEA  +A++ AR +  R             V F  ++HG   G L      ALT      
Sbjct: 118 TEATMSALRLARGYTGR----------PYIVKFRGNYHGHADGLLVEAGSGALT------ 161

Query: 218 SPF-EPVMPGV--NF------VEYGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYSATK 266
                P   GV   +      +EY + E  R+++  +  + AA+  EP+ G  G+   T+
Sbjct: 162 --LGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTE 219

Query: 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGA- 325
           +FL+ L +     G LL+ DEV  G  R  +  A E  G+ PD++TL K L GGLP  A 
Sbjct: 220 DFLKALHE-AKAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGLPAAAY 277

Query: 326 ---ALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAFLASKLARN 375
                + EKVA        G      T +G+PL   A +A L+ +       + L   
Sbjct: 278 AGRREIMEKVAPL------GPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDL 329

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	451
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	100.0
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	100.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	100.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	100.0
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	100.0
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	100.0
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	100.0
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	100.0
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	100.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	100.0
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	100.0
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	100.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	100.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.96
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.98
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.98
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.98
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.98
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.98
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.98
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.97
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.97
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.97
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.97
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.97
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.97
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.97
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.97
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.97
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.97
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.97
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.97
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.97
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.97
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.97
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.97
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.97
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.97
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.97
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.97
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.97
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.97
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.97
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.97
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.97
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.97
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.97
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.96
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.96
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.96
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.96
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.96
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.96
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.96
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.96
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.96
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.96
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.96
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.96
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.96
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.95
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.95
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.95
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.95
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.95
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.95
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.95
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.95
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.95
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.95
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.95
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.95
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.95
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.94
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.94
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.94
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.94
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.94
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.94
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.94
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.94
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.93
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.93
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.93
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.93
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.93
1svv_A	359	Threonine aldolase; structural genomics, structura	99.93
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.93
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.93
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.93
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.93
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.93
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.93
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.93
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.93
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.93
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.93
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.92
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.92
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.92
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.92
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.92
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.92
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.92
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.92
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.92
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.92
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.92
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.92
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.92
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.92
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.92
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.91
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.91
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.91
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.91
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.91
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.91
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.91
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.91
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.91
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.9
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.9
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.9
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.9
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.9
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.9
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.9
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.9
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.89
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.89
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.89
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.89
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.89
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.89
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.89
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.89
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.89
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.89
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.89
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.89
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.89
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.88
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.88
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.88
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.88
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.88
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.87
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.87
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.87
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.87
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.87
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.87
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.87
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.86
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.85
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.85
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.84
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.83
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.83
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.82
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.81
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.8
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.8
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.79
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.79
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.78
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.78
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.78
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.77
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.76
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.75
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.75
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.75
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.75
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.74
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.73
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.73
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.71
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.7
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.7
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.69
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.68
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.66
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.65
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.63
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.52
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.41
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.38
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.34
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.33
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.22
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.17
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.86

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=6.6e-73  Score=573.00  Aligned_cols=376  Identities=34%  Similarity=0.566  Sum_probs=324.8

Q ss_pred             chHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CC
Q 013008           61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YY  138 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~  138 (451)
                      +++++.++..++...++. ++|+++++++|+||||.|||+||||++++++.++||+||+|++|+.+|++++.+.... .+
T Consensus        26 ~s~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~  105 (456)
T 4atq_A           26 KSQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTP  105 (456)
T ss_dssp             HHHHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSC
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccC
Confidence            455555555555444433 4799999999999999999999999999999999999999999999999998775443 35


Q ss_pred             CHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008          139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH  215 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~  215 (451)
                      ++...+|+++|++..+   .++++|+|||+|||+.|||+||.+|+         |++||.|+++|||++.+++++++...
T Consensus       106 ~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~---------r~~ii~~~~~yHG~t~~als~t~~~~  176 (456)
T 4atq_A          106 YEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATG---------RDAVVAFDHAYHGRTNLTMALTAKAM  176 (456)
T ss_dssp             CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred             cHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhc---------CCeEEEEecccCCccccccccccCcc
Confidence            6778899999999985   67899999999999999999999984         88999999999999999998876543


Q ss_pred             -cCCCCcCCCCCeeEeeCC-----------CHHH-------HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008          216 -YRSPFEPVMPGVNFVEYG-----------NIEA-------TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC  276 (451)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~-----------d~~~-------le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~  276 (451)
                       +...+.|..+++..+|++           +.+.       +++.+.++++++||+||+++++|.++|+++||++|+++|
T Consensus       177 ~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc  256 (456)
T 4atq_A          177 PYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWA  256 (456)
T ss_dssp             TTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred             ccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHH
Confidence             455566777888777654           2333       333344568999999999999999999999999999999


Q ss_pred             HHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHH
Q 013008          277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI  356 (451)
Q Consensus       277 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~  356 (451)
                      ++||++||+|||+|||||+|++|+++++|+.||++|+||+++||+|+|++++++++++.+.+..|++||++||++|+|++
T Consensus       257 ~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaal  336 (456)
T 4atq_A          257 KEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAAL  336 (456)
T ss_dssp             HHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHH
T ss_pred             hhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHhcChHHHHH--------------HHhC-----CCCcceecccceeEEEEecC---------ChHHHHHHHHHCCc
Q 013008          357 AVLDKISNPAFLAS--------------KLAR-----NPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGL  408 (451)
Q Consensus       357 aal~~~~~~~~~~~--------------~~~~-----~~~~~~v~g~G~~~~~~~~~---------~~~~~~~~l~~~Gv  408 (451)
                      ++|++++++++.++              +.++     ++.+.+|||.|+|+++++..         ...++.+.|+++|+
T Consensus       337 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gv  416 (456)
T 4atq_A          337 AAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGV  416 (456)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999988777655              3333     35788999999999999931         13568899999999


Q ss_pred             eeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          409 LVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       409 ~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ++.+++. ++++||+||+++|+|+||+++++|+++|+.
T Consensus       417 l~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          417 IILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             ECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            9988765 689999999999999999999999999975

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=4.2e-72  Score=564.63  Aligned_cols=374  Identities=26%  Similarity=0.352  Sum_probs=325.9

Q ss_pred             cCCcchhhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccC
Q 013008           33 KRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNAL  112 (451)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~l  112 (451)
                      .++|    .|.++ |++|++++|||++++++.            |.++|+++++|+|+||||+|||+||||++++++.+|
T Consensus        39 ~~~p----~s~~~-~~~a~~~~pgg~~~~~~~------------~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~l  101 (454)
T 4ao9_A           39 DANP----ASQRQ-FEAQARYMPGANSRSVLF------------YAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVY  101 (454)
T ss_dssp             HHCH----HHHHH-HHHHTTTSGGGCSSGGGC------------CSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTT
T ss_pred             hcCc----HhHHH-HHHHhhhCCCCCCCCccc------------cCCCCccEEEeecCEEEECCCCEEEEccccHHhhcc
Confidence            6667    55666 999999999999888763            468899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          113 GHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       113 G~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      ||+||+|++|+.+|+++..+.  ..++....+|+++|+++++ .++|+|+|||+|||+.|||++|.||+         |+
T Consensus       102 GH~hp~v~~Av~~q~~~~~~~--~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tg---------r~  170 (454)
T 4ao9_A          102 GHSAPEIRDAVIEAMQGGINL--TGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTG---------RR  170 (454)
T ss_dssp             CSCCHHHHHHHHHHHHTCSCC--CSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHT---------CC
T ss_pred             cCCCHHHHHHHHHHHhcCCCc--cCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhccc---------CC
Confidence            999999999999999886543  2344557899999999986 89999999999999999999999985         88


Q ss_pred             eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHH
Q 013008          192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFL  269 (451)
Q Consensus       192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l  269 (451)
                      +||.|+++|||++....+.++...       ...++..+|+||+++++++++  .+++++||+||+++++|+++|+++||
T Consensus       171 ~ii~~~~~yHG~t~~~~~~~~~~~-------~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL  243 (454)
T 4ao9_A          171 KIVVFSGGYHGGVLGFGARPSPTT-------VPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFL  243 (454)
T ss_dssp             EEEEETTCBCSTTCBBSSSBCTTS-------CCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHH
T ss_pred             eEEEEeCCcCCccccccccccCcc-------CCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhH
Confidence            999999999999877655443211       123456789999999999997  45799999999999999999999999


Q ss_pred             HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC----CccCCC
Q 013008          270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG----DHGSTF  345 (451)
Q Consensus       270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~----~~~~t~  345 (451)
                      ++|+++|++||++||+|||+|  ||+|.+++++++|+.||++|++|++|||+|+|++++++++++.+.+.    .|++||
T Consensus       244 ~~lr~lc~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~  321 (454)
T 4ao9_A          244 QALRESATQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTF  321 (454)
T ss_dssp             HHHHHHHHHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTT
T ss_pred             HHHHHHHhhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCC
Confidence            999999999999999999999  59999999999999999999999999999999999999999998653    588999


Q ss_pred             CCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC------------C---h
Q 013008          346 AGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV------------S---A  396 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~------------~---~  396 (451)
                      ++||++|+|++++|+.+++++++++              +.++++.+..+++.|+|++++|..            +   .
T Consensus       322 ~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~  401 (454)
T 4ao9_A          322 NNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLR  401 (454)
T ss_dssp             TTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHH
Confidence            9999999999999999998887765              345567778899999999998820            1   2


Q ss_pred             HHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          397 TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ..++..|+++||++.|.+     ++.+++.+|++|||+++++|++++++...
T Consensus       402 ~~~~~~ll~~Gv~~~p~~-----~~~~s~~~T~~dId~~l~al~~~l~~~~a  448 (454)
T 4ao9_A          402 QLLFFHLLNEDIYSSPRG-----FVVLSLPLTDADIDRYVAAIGSFIGGHGA  448 (454)
T ss_dssp             HHHHHHHHHTTEECCTTC-----EEECCTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHCCEEEcCCC-----CEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence            357788999999998764     34578889999999999999999998754

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=8.6e-71  Score=559.49  Aligned_cols=381  Identities=26%  Similarity=0.454  Sum_probs=329.1

Q ss_pred             hHHHHHHHHhcccccCCC-------CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc
Q 013008           62 NKEVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS  134 (451)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~  134 (451)
                      .+.+.+++.++.+++|..       .|++++||+|+||||.|||+||||.++++++++||+||+|.+|+.+|++++.+..
T Consensus        24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~  103 (473)
T 4e3q_A           24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH  103 (473)
T ss_dssp             CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC
T ss_pred             cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc
Confidence            445667788888887764       4899999999999999999999999999999999999999999999999976542


Q ss_pred             C--CCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc
Q 013008          135 N--MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL  210 (451)
Q Consensus       135 ~--~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~  210 (451)
                      .  ...+++..+|+++|++..+  .++|+|++||+|||+.|+|+||.|+..++.+   ++.+||.++++|||.+.+++++
T Consensus       104 ~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~a~s~  180 (473)
T 4e3q_A          104 AFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKP---QKRKILTRWNAYHGVTAVSASM  180 (473)
T ss_dssp             CCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHH
T ss_pred             ccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CcceEEEeeceECCCccccccc
Confidence            2  2356778999999999986  7799999999999999999999998776654   5889999999999999999998


Q ss_pred             cCCCCcCCCCcCCCCCeeEeeCCC------------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHH
Q 013008          211 TSKEHYRSPFEPVMPGVNFVEYGN------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFL  269 (451)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l  269 (451)
                      ++.+. +..+.+..+++..++.++                  .+++++.+.   ++++|+||+||+++++|+++|+++||
T Consensus       181 tg~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl  259 (473)
T 4e3q_A          181 TGKPY-NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYF  259 (473)
T ss_dssp             SCCGG-GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHH
T ss_pred             ccccc-ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHH
Confidence            87543 334445556666555432                  345555554   45799999999999999999999999


Q ss_pred             HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhcc-------CCCc
Q 013008          270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-------YGDH  341 (451)
Q Consensus       270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~-------~~~~  341 (451)
                      ++|+++|++||++||+|||+|||||+|++|+++++|+.||++|++|+++|| +|+|++++++++++.+.       ...|
T Consensus       260 ~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~h  339 (473)
T 4e3q_A          260 QAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPH  339 (473)
T ss_dssp             HHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhcccccccccccc
Confidence            999999999999999999999999999999999999999999999999998 99999999999998763       3468


Q ss_pred             cCCCCCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceecccceeEEEEec-------------CC
Q 013008          342 GSTFAGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVRGLGLIIGIEFD-------------VS  395 (451)
Q Consensus       342 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~g~G~~~~~~~~-------------~~  395 (451)
                      ++||++||++|+|++++|+++++++++++             -+..+|.+.++||.|+|+++++.             ..
T Consensus       340 g~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~  419 (473)
T 4e3q_A          340 GFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSV  419 (473)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCH
T ss_pred             CCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHH
Confidence            99999999999999999999988877766             12345788999999999999982             11


Q ss_pred             hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ...+.+.|+++|+++.+.+  +.+||.||+++|++|+|+++++|+++++++.+
T Consensus       420 ~~~~~~~~~~~Gll~~~~g--~~i~l~PPL~it~~eid~~~~~l~~al~~v~a  470 (473)
T 4e3q_A          420 SERIANTCTDLGLICRPLG--QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA  470 (473)
T ss_dssp             HHHHHHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCcEEEecC--CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3568899999999999875  78999999999999999999999999988753

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=2.2e-63  Score=510.02  Aligned_cols=379  Identities=25%  Similarity=0.453  Sum_probs=328.8

Q ss_pred             HHHHHHHhcccccCC-------CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-
Q 013008           64 EVMEAEKKLLVGTYN-------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-  135 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~-------~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-  135 (451)
                      ++.+.+.++.+++|.       ..|+++++|+|+++||.||++||||++|+++++|||+||+|++|+.++++++.+++. 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~   92 (476)
T 3i5t_A           13 AVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW   92 (476)
T ss_dssp             CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT
T ss_pred             HHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC
Confidence            345555666666543       258999999999999999999999999999999999999999999999998766544 


Q ss_pred             CCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          136 MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       136 ~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      .+.++...+|+++|+++++  .++|+|++||+||++.|+++++.++..++..   ++++||+++++|||++..++++++.
T Consensus        93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~---~~~~vi~~~~~yHg~~~~~~~~~~~  169 (476)
T 3i5t_A           93 YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRP---QKKRIIVRYDGYHGSTALTAACTGR  169 (476)
T ss_dssp             TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHTCCC
T ss_pred             ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEcCCcCcCChhhccccCC
Confidence            5677889999999999985  7899999999999999999999885444332   5889999999999999999999888


Q ss_pred             CCcCCCCcCCCCCeeEeeCCC----------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHH
Q 013008          214 EHYRSPFEPVMPGVNFVEYGN----------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD  274 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~  274 (451)
                      +.++..+.+..+++.+++++.                +++|+++++   ++++++||+||+++++|.++++++||++|++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~  249 (476)
T 3i5t_A          170 TGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKA  249 (476)
T ss_dssp             GGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             hhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence            877777777778887766332                789999886   2579999999999999999999999999999


Q ss_pred             HHHHhCCEEEEeccccCCCccccccccc-ccCCCcceeeecccccCC-cccccccccHHHHhhccCC-------CccCCC
Q 013008          275 ACDDAGALLVFDEVQCGLGRTGYLWAHE-HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-------DHGSTF  345 (451)
Q Consensus       275 l~~~~g~llI~DEv~tg~gr~G~~~~~~-~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-------~~~~t~  345 (451)
                      +|++||++||+||||+||||+|.+++++ ++++.||++||||++++| +|+|++++++++++.+...       .+++||
T Consensus       250 lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~  329 (476)
T 3i5t_A          250 ICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY  329 (476)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred             HHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence            9999999999999999999999988888 999999999999999999 9999999999999998753       677899


Q ss_pred             CCcHHHHHHHHHHHHHhcChHHHHH-----------HH--hCCCCcceecccceeEEEEecCC-------------hHHH
Q 013008          346 AGSPLVCNAAIAVLDKISNPAFLAS-----------KL--ARNPHVKDVRGLGLIIGIEFDVS-------------ATPV  399 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~~~~~~~~~-----------~~--~~~~~~~~v~g~G~~~~~~~~~~-------------~~~~  399 (451)
                      ++||++|+|++++|+.++++++.++           +.  .++|.+..+++.|+|+++++...             ...+
T Consensus       330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~  409 (476)
T 3i5t_A          330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKI  409 (476)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHH
Confidence            9999999999999998865555544           22  24567788999999999998422             5578


Q ss_pred             HHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          400 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       400 ~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++.|+++||++.|.+  +++||+||+++|+++|++++++|+++++++.
T Consensus       410 ~~~l~~~Gv~v~~~g--~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~  455 (476)
T 3i5t_A          410 DERCFELGLIVRPLG--DLCVISPPLIISRAQIDEMVAIMRQAITEVS  455 (476)
T ss_dssp             HHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999975  7899999999999999999999999998765

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=6.9e-63  Score=505.62  Aligned_cols=381  Identities=27%  Similarity=0.472  Sum_probs=326.3

Q ss_pred             chHHHHHHHHhcccccCCC-------CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc
Q 013008           61 NNKEVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV  133 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~  133 (451)
                      +.+++.+.+.++.+++|..       .|+++++++|+++||.||++||||++|+++++|||+||+|++|+.++++++.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~   90 (472)
T 3hmu_A           11 PTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYY   90 (472)
T ss_dssp             CHHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccc
Confidence            4566677777788877653       689999999999999999999999999999999999999999999999986532


Q ss_pred             --cCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh
Q 013008          134 --SNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA  209 (451)
Q Consensus       134 --~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~  209 (451)
                        ...+.++...+|+++|+++++  .++|+|++||+||++.|+++++.++..++.+   ++++||+++++|||++..+++
T Consensus        91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~---~~~~ii~~~~~yHg~t~~~~~  167 (472)
T 3hmu_A           91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQP---EKTVIISRKNAYHGSTVASSA  167 (472)
T ss_dssp             CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHH
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEcCcCCCccHHhhh
Confidence              234567789999999999985  7899999999999999999999988655543   588999999999999999999


Q ss_pred             ccCCCCcCCCCcCCCCCeeEeeCC------C-----------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHH
Q 013008          210 LTSKEHYRSPFEPVMPGVNFVEYG------N-----------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFL  269 (451)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~------d-----------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l  269 (451)
                      +++.+.++..+. ..+++..++.+      |           +++|+++++   ++++++||+||+++++|.++++++||
T Consensus       168 ~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l  246 (472)
T 3hmu_A          168 LGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYW  246 (472)
T ss_dssp             HSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHH
T ss_pred             ccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHH
Confidence            888766555555 55677666532      2           788998886   35799999999999999999999999


Q ss_pred             HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC--CccCCCC
Q 013008          270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG--DHGSTFA  346 (451)
Q Consensus       270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~--~~~~t~~  346 (451)
                      ++|+++|++||++||+||||+||||+|++++++++++.||++||||++++| +|+|++++++++++.+...  .+++||+
T Consensus       247 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~  326 (472)
T 3hmu_A          247 PEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYS  326 (472)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred             HHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCC
Confidence            999999999999999999999999999988899999999999999999987 8999999999999998433  6788999


Q ss_pred             CcHHHHHHHHHHHHHhcChHHHHH------------H--HhCCCCcceecccceeEEEEecCC--------------hHH
Q 013008          347 GSPLVCNAAIAVLDKISNPAFLAS------------K--LARNPHVKDVRGLGLIIGIEFDVS--------------ATP  398 (451)
Q Consensus       347 ~~~~~~aaa~aal~~~~~~~~~~~------------~--~~~~~~~~~v~g~G~~~~~~~~~~--------------~~~  398 (451)
                      +||++|+|++++|+.++++++.++            +  +.++|.+..+++.|+|+++++..+              ...
T Consensus       327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~  406 (472)
T 3hmu_A          327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYI  406 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHH
Confidence            999999999999998754433222            1  123567788999999999998421              557


Q ss_pred             HHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       399 ~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +++.|+++||++.+++  +++||+|++++|+|++++++++|+++++++.
T Consensus       407 ~~~~l~~~Gv~v~~~g--~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~  453 (472)
T 3hmu_A          407 CRERCFANNLIMRHVG--DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ  453 (472)
T ss_dssp             HHHHHHHTTBCCEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999986  7899999999999999999999999987754

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=6.6e-62  Score=496.39  Aligned_cols=379  Identities=34%  Similarity=0.532  Sum_probs=329.7

Q ss_pred             chHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 013008           61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY  138 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~  138 (451)
                      .++++.++..++...++. +.|+++++|+|++|||.||++||||.+++++++|||+||+|++|+.++++++.+.. ..++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~  105 (453)
T 4ffc_A           26 RSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTP  105 (453)
T ss_dssp             HHHHHHHHHHHHBCTTTCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSC
T ss_pred             CHHHHHHHHHHhcCCCcCCCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCC
Confidence            455666666666666554 67999999999999999999999999999999999999999999999999876543 3467


Q ss_pred             CHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-
Q 013008          139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-  214 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-  214 (451)
                      ++...+|+++|++.++   .++|+|++||+||++.|+++++.++         ++++||+++++|||++..++++++.. 
T Consensus       106 ~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~---------g~~~ii~~~~~yhg~~~~~~~~~~~~~  176 (453)
T 4ffc_A          106 YEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT---------GRPAVVAFDNAYHGRTNLTMALTAKSM  176 (453)
T ss_dssp             CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred             CHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhc---------CCCEEEEEcCccCCcchHHHhhcCCCc
Confidence            7789999999999986   5799999999999999999999876         47899999999999999999988764 


Q ss_pred             CcCCCCcCCCCCeeEeeCC----C-------------HHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHH
Q 013008          215 HYRSPFEPVMPGVNFVEYG----N-------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD  277 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~  277 (451)
                      .++..+.+..+++..++++    |             ++.|++.+.++++++||+||+++++|.++++++||++|+++|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~  256 (453)
T 4ffc_A          177 PYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS  256 (453)
T ss_dssp             TTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred             ccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH
Confidence            5666777777788777765    4             4667777766689999999999999999999999999999999


Q ss_pred             HhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHH
Q 013008          278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA  357 (451)
Q Consensus       278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~a  357 (451)
                      +||++||+||||+||||+|.+++++++++.||++||||++++|+|+|++++++++++.+.+..+.+||++||++|+|+++
T Consensus       257 ~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~a  336 (453)
T 4ffc_A          257 ENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVA  336 (453)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHH
T ss_pred             HcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHH
Confidence            99999999999999999999888999999999999999999999999999999999999877889999999999999999


Q ss_pred             HHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC---------ChHHHHHHHHHCCceeeecC
Q 013008          358 VLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLLVLTAG  414 (451)
Q Consensus       358 al~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~---------~~~~~~~~l~~~Gv~~~~~~  414 (451)
                      +|+.++++++.++              ++++++.+..+++.|+++++++..         ...++.+.|+++||++.|++
T Consensus       337 al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  416 (453)
T 4ffc_A          337 ALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCG  416 (453)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEEC
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCC
Confidence            9998755554443              334567778889999999998832         25678899999999999876


Q ss_pred             C-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          415 K-GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       415 ~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      . ++.+||+|++++|+|++++++++|+++++++..
T Consensus       417 ~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  451 (453)
T 4ffc_A          417 TFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS  451 (453)
T ss_dssp             TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4 578999999999999999999999999988653

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=100.00  E-value=1.3e-61  Score=494.46  Aligned_cols=385  Identities=31%  Similarity=0.471  Sum_probs=326.4

Q ss_pred             chHHHHHHHHhcccccCCCC------ceEEEeecccEEEec-CCC--EEEeeccCcccccCCCCCHHHHHHHHHHHhhcc
Q 013008           61 NNKEVMEAEKKLLVGTYNRA------PVVLASGKGCKLYDA-EGR--EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT  131 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~------p~~~~~~~G~~l~d~-~G~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~  131 (451)
                      ..+++++.+.++.+++|.+.      |+++++++|+++||. ||+  +||||++++++++|||+||+|++|+.++++++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~  108 (457)
T 3tfu_A           29 TPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN  108 (457)
T ss_dssp             CHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc
Confidence            45677888889999998875      999999999999999 999  999999999999999999999999999999876


Q ss_pred             ccc-CCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh
Q 013008          132 HVS-NMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL  208 (451)
Q Consensus       132 ~~~-~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~  208 (451)
                      +.+ ..++++...+|+++|++.++  .++|+|++||+||++.|+++++.++..++.+   ++++||+++++|||++..++
T Consensus       109 ~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~---g~~~ii~~~~~yhg~~~~~~  185 (457)
T 3tfu_A          109 HVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLP---GKRRLMTWRGGYHGDTFLAM  185 (457)
T ss_dssp             CCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHH
T ss_pred             CccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCceEEEEcCCcCCccHHhh
Confidence            654 44567889999999999985  7899999999999999999999886544322   47799999999999999998


Q ss_pred             hccC-CCCcCCCCcCCCCCeeEeeC-------CCHHHHHHhcC--CCCeEEEEEcc-ccCCCCccccCHHHHHHHHHHHH
Q 013008          209 ALTS-KEHYRSPFEPVMPGVNFVEY-------GNIEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACD  277 (451)
Q Consensus       209 ~~~~-~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~--~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~  277 (451)
                      ++++ ...+...+.+..+++.+++.       +|+++|+++++  .+++++|++|| +++++|.++++++||++|+++|+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~  265 (457)
T 3tfu_A          186 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR  265 (457)
T ss_dssp             TTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred             cccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence            8853 44455556666677776665       58999999997  35799999999 99999999999999999999999


Q ss_pred             HhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhcc---CC--CccCCCCCcHHH
Q 013008          278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN---YG--DHGSTFAGSPLV  351 (451)
Q Consensus       278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~---~~--~~~~t~~~~~~~  351 (451)
                      +||++||+||||+||||+|.+++++++++.||++||||+++|| +|+|++++++++++.+.   ..  .+++||++||++
T Consensus       266 ~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a  345 (457)
T 3tfu_A          266 RYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLA  345 (457)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHH
T ss_pred             HcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHH
Confidence            9999999999999999999988999999999999999999998 69999999999999884   33  678999999999


Q ss_pred             HHHHHHHHHHhcChHHHHH----------HH---hCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCCC
Q 013008          352 CNAAIAVLDKISNPAFLAS----------KL---ARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKG  416 (451)
Q Consensus       352 ~aaa~aal~~~~~~~~~~~----------~~---~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~  416 (451)
                      |+|++++|+.++++++.++          .+   .+++.+..+++.|+++++++..  +..++++.|+++||++.|.+  
T Consensus       346 ~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~~--  423 (457)
T 3tfu_A          346 CAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFR--  423 (457)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCCCHHHHHHHHHHTTEECCCBT--
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcccHHHHHHHHHHCCeEEEecC--
Confidence            9999999998876655544          11   2356677889999999999843  46889999999999999864  


Q ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008          417 NVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS  450 (451)
Q Consensus       417 ~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~  450 (451)
                      +.+||+|++++|+|++++++++|+++++++..+|
T Consensus       424 ~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~~~p  457 (457)
T 3tfu_A          424 NLVYAMPPYICTPAEITQITSAMVEVARLVGSLP  457 (457)
T ss_dssp             TEEEECCCTTCCHHHHHHHHHHHHHHHHHC----
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHhccCC
Confidence            7899999999999999999999999998876543

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=100.00  E-value=2.5e-61  Score=491.94  Aligned_cols=376  Identities=31%  Similarity=0.520  Sum_probs=325.2

Q ss_pred             chHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 013008           61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY  138 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~  138 (451)
                      .++++.++..++...++. +.|+++++|+|++|||.||++||||.+++++++|||+||+|++|+.++++++.+.+ ..+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~  102 (451)
T 3oks_A           23 RSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTP  102 (451)
T ss_dssp             HHHHHHHHHHHHBCTTBCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSC
T ss_pred             cHHHHHHHHHhhccCCcCCCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccC
Confidence            456666666666666654 67999999999999999999999999999999999999999999999998876543 3467


Q ss_pred             CHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-
Q 013008          139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-  214 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-  214 (451)
                      ++...+|+++|++.++   .++|+|++||+||++.|+++++.++         ++++||+++++|||++..++++++.. 
T Consensus       103 ~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~---------g~~~ii~~~~~yhG~~~~~~~~~~~~~  173 (451)
T 3oks_A          103 YEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT---------HKPAVVAFDHAYHGRTNLTMALTAKVM  173 (451)
T ss_dssp             CHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred             CHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhc---------CCCeEEEEcCCcCCccHHHHHhcCCCc
Confidence            7788999999999985   5799999999999999999999876         47899999999999999999988764 


Q ss_pred             CcCCCCcCCCCCeeEeeCC------------------CHHHHHHhc----CCCCeEEEEEccccCCCCccccCHHHHHHH
Q 013008          215 HYRSPFEPVMPGVNFVEYG------------------NIEATRKLI----QPGKTAAVFVEPIQGEGGIYSATKEFLQFL  272 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~------------------d~~~le~~l----~~~~~aavi~ep~~~~~G~~~~~~~~l~~l  272 (451)
                      .++..+.+..+++..++++                  +++.+++.+    .++++++|++||+++++|.++++++||++|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l  253 (451)
T 3oks_A          174 PYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTL  253 (451)
T ss_dssp             TTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred             ccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHH
Confidence            5666777777888888776                  233343443    346799999999999999999999999999


Q ss_pred             HHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHH
Q 013008          273 RDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC  352 (451)
Q Consensus       273 ~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~  352 (451)
                      +++|++||++||+||||+||||+|.+++++++++.||++||||++++|+|+|++++++++++.+.+..+.+||++||++|
T Consensus       254 ~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~  333 (451)
T 3oks_A          254 LDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIAC  333 (451)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHH
T ss_pred             HHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999998778899999999999


Q ss_pred             HHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC---------ChHHHHHHHHHCCce
Q 013008          353 NAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLL  409 (451)
Q Consensus       353 aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~---------~~~~~~~~l~~~Gv~  409 (451)
                      +|++++|+.++++++.++              ++++++.+..+++.|+++++++..         ...++.+.|+++||+
T Consensus       334 aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~  413 (451)
T 3oks_A          334 AAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVI  413 (451)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcE
Confidence            999999998765555443              334567778899999999999832         246788999999999


Q ss_pred             eeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          410 VLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       410 ~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +.|++. ++.+||+|++++|++++++++++|++++++
T Consensus       414 v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          414 VLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             CEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            998764 578999999999999999999999998864

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=3.3e-61  Score=492.37  Aligned_cols=381  Identities=25%  Similarity=0.411  Sum_probs=326.4

Q ss_pred             HHHHHHhcccccCC---------CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc--
Q 013008           65 VMEAEKKLLVGTYN---------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--  133 (451)
Q Consensus        65 ~~~~~~~~~~~~~~---------~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--  133 (451)
                      +.+.+.++.+++|.         ++|+++++|+|+++||.||++||||.+++++++|||+||+|++|+.+++++..+.  
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~   88 (460)
T 3gju_A            9 LNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHA   88 (460)
T ss_dssp             HHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc
Confidence            44455556666553         3469999999999999999999999999999999999999999999999886532  


Q ss_pred             cCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          134 SNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      ...+.++...+|+++|+++++  .++|+|++||+||++.|+++++.++..++.+   ++++||+++++|||++..+++++
T Consensus        89 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~  165 (460)
T 3gju_A           89 YVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRP---EKKKIISRWRGYHGSGVMTGSLT  165 (460)
T ss_dssp             CTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHC
T ss_pred             ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCCHHHhhcc
Confidence            234567779999999999874  7899999999999999999999887655433   58999999999999999999988


Q ss_pred             CCCCcCCCCcCCCCCeeEeeC------CC------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHH
Q 013008          212 SKEHYRSPFEPVMPGVNFVEY------GN------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~------~d------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      +...++..+.+..+++..++.      +|            +++|+++++   ++++++|++||+++++|.++++++||+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~  245 (460)
T 3gju_A          166 GLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWE  245 (460)
T ss_dssp             CCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred             CCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHH
Confidence            877777777777777776652      33            689999886   257999999999999999999999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhcc-------CCCcc
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-------YGDHG  342 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~-------~~~~~  342 (451)
                      +|+++|++||++||+||||+||||+|++++.+++++.||++||||++++| +|+|++++++++++.+.       ...+.
T Consensus       246 ~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~  325 (460)
T 3gju_A          246 KIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHG  325 (460)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCC
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccC
Confidence            99999999999999999999999999988889999999999999999988 89999999999999883       34678


Q ss_pred             CCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC-------------
Q 013008          343 STFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS-------------  395 (451)
Q Consensus       343 ~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~-------------  395 (451)
                      +||++||++|+|++++|+.++++++.++              .+++++.+..+++.|+++++++...             
T Consensus       326 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  405 (460)
T 3gju_A          326 WTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKI  405 (460)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHH
Confidence            9999999999999999998755554443              2345677888999999999988311             


Q ss_pred             hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ..++++.|+++||++.|.+.++++||+|++++|+|++++++++|+++++++..
T Consensus       406 ~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  458 (460)
T 3gju_A          406 GPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFA  458 (460)
T ss_dssp             HHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            45788999999999999764478999999999999999999999999988753

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=100.00  E-value=1.5e-60  Score=487.33  Aligned_cols=363  Identities=28%  Similarity=0.483  Sum_probs=312.7

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHhhccC--C
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSF--A  155 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~--~  155 (451)
                      .|+++++|+|+++||.||++||||++++++++|||+||+|++|+.++++++.+.  ...+.++...+|+++|+++++  .
T Consensus        32 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~  111 (459)
T 4a6r_A           32 GARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF  111 (459)
T ss_dssp             --CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC
T ss_pred             CCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999999999999999999999999886522  234667889999999999985  7


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC--
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--  233 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  233 (451)
                      ++|+|++||+||++.|+++++.++..++.+   ++++||+++++|||++..+.++++...++..+.+..+++..++.+  
T Consensus       112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  188 (459)
T 4a6r_A          112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKP---EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWW  188 (459)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCH
T ss_pred             CEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCcc
Confidence            899999999999999999999887655543   589999999999999999999988777776677777777766633  


Q ss_pred             -------C--------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008          234 -------N--------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT  295 (451)
Q Consensus       234 -------d--------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~  295 (451)
                             |        +++|+++++   ++++++|++||+++++|.++++++||++|+++|++||++||+||||+||||+
T Consensus       189 ~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~  268 (459)
T 4a6r_A          189 YKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRT  268 (459)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred             ccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence                   2        788999886   2578999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcceeeecccccCC-cccccccccHHHHhhcc---CCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-
Q 013008          296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN---YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-  370 (451)
Q Consensus       296 G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-  370 (451)
                      |.+++.+++++.||++||||++++| +|+|++++++++++.+.   ...+++||++||++|+|++++|+.++++++.++ 
T Consensus       269 G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~  348 (459)
T 4a6r_A          269 GEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV  348 (459)
T ss_dssp             SSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHH
Confidence            9988889999999999999999987 89999999999999886   456778999999999999999997654332221 


Q ss_pred             -----------H---HhCCCCcceecccceeEEEEecCC-------------hHHHHHHHHHCCceeeecCCCCEEEEeC
Q 013008          371 -----------K---LARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRLVP  423 (451)
Q Consensus       371 -----------~---~~~~~~~~~v~g~G~~~~~~~~~~-------------~~~~~~~l~~~Gv~~~~~~~~~~iri~~  423 (451)
                                 +   +..++.+..+++.|+++++++...             ...+++.|+++||++.|++  +++||+|
T Consensus       349 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRi~~  426 (459)
T 4a6r_A          349 KDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG--DHIVSAP  426 (459)
T ss_dssp             HHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET--TEEEECC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC--CEEEEEC
Confidence                       2   245567788999999999988321             5678899999999999976  7899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          424 PLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       424 ~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++++|+|++++++++|+++++++.
T Consensus       427 ~~~~t~e~i~~~l~~l~~~l~~~~  450 (459)
T 4a6r_A          427 PLVMTRAEVDEMLAVAERCLEEFE  450 (459)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=4.7e-60  Score=482.26  Aligned_cols=382  Identities=29%  Similarity=0.492  Sum_probs=302.9

Q ss_pred             HHHHHHHhcccccCC------CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc-cCC
Q 013008           64 EVMEAEKKLLVGTYN------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNM  136 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~------~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~  136 (451)
                      ++.+.+.++.++.+.      ..|+++++|+|+++||.||++||||++++++.++||+||+|++|+.+++++..++ ...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~   83 (448)
T 3dod_A            4 DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLG   83 (448)
T ss_dssp             HHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSS
T ss_pred             HHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc
Confidence            345556666665543      3589999999999999999999999999999999999999999999999887553 234


Q ss_pred             CCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          137 YYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       137 ~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      +.++...+|+++|+++++  .++|+|++||+||++.|+++++.++...+.+   .+++||+++++|||++..++++++..
T Consensus        84 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~---~~~~vi~~~~~yhg~~~~~~~~~~~~  160 (448)
T 3dod_A           84 MTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP---EKQKFIAMKNGYHGDTIGAVSVGSIE  160 (448)
T ss_dssp             SEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEEC-----------------
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCC---CCCEEEEECCCCCCccHHHHHhcCCc
Confidence            566778999999999984  6899999999999999999999873322211   37999999999999999998888777


Q ss_pred             CcCCCCcCCCCCeeEeeCCC----------------HHHHHHhcC--CCCeEEEEEcccc-CCCCccccCHHHHHHHHHH
Q 013008          215 HYRSPFEPVMPGVNFVEYGN----------------IEATRKLIQ--PGKTAAVFVEPIQ-GEGGIYSATKEFLQFLRDA  275 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~--~~~~aavi~ep~~-~~~G~~~~~~~~l~~l~~l  275 (451)
                      .++..+.|..+++..+++++                +++|+++++  ++++++|++||++ +++|.++++++||++|+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l  240 (448)
T 3dod_A          161 LFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVREL  240 (448)
T ss_dssp             ------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHH
T ss_pred             cccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHH
Confidence            66666667667777777654                899999997  4579999999998 9999999999999999999


Q ss_pred             HHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC-------CCccCCCCC
Q 013008          276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAG  347 (451)
Q Consensus       276 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~  347 (451)
                      |++||++||+||||+|||++|.+++++++++.||++||||++++| +|+|++++++++++.+..       ..+++||++
T Consensus       241 ~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~  320 (448)
T 3dod_A          241 CTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTG  320 (448)
T ss_dssp             HHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT
T ss_pred             HHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCc
Confidence            999999999999999999999988899999999999999999999 599999999999999876       567899999


Q ss_pred             cHHHHHHHHHHHHHhcChHHHHH-----------HH--hCCCCcceecccceeEEEEecCC-------------hHHHHH
Q 013008          348 SPLVCNAAIAVLDKISNPAFLAS-----------KL--ARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVD  401 (451)
Q Consensus       348 ~~~~~aaa~aal~~~~~~~~~~~-----------~~--~~~~~~~~v~g~G~~~~~~~~~~-------------~~~~~~  401 (451)
                      ||++|+|++++|+.++++++.++           +.  ..+|.+..+++.|+++++++...             +.++++
T Consensus       321 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (448)
T 3dod_A          321 NQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSL  400 (448)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHH
Confidence            99999999999998755554443           22  24566777889999999998421             367999


Q ss_pred             HHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008          402 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS  450 (451)
Q Consensus       402 ~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~  450 (451)
                      .|+++||++.|++  +.+||+|++++|+|+|++++++|+++++++...+
T Consensus       401 ~l~~~Gv~~~~~~--~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~  447 (448)
T 3dod_A          401 KMRELGMLTRPLG--DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSLE  447 (448)
T ss_dssp             HHHHTTEECCEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCcEEeccC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999874  7899999999999999999999999999887554

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=8e-61  Score=516.21  Aligned_cols=380  Identities=23%  Similarity=0.352  Sum_probs=314.1

Q ss_pred             HHHHHHhcccccCCC-------CceEEEeeccc--EEEecCCC----EEEeeccCcccccCCCC-CHHHHHHHHHHHhhc
Q 013008           65 VMEAEKKLLVGTYNR-------APVVLASGKGC--KLYDAEGR----EYLDLSSGIAVNALGHG-DADWIKAVVDQANVL  130 (451)
Q Consensus        65 ~~~~~~~~~~~~~~~-------~p~~~~~~~G~--~l~d~~G~----~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~  130 (451)
                      +.+.+.++.+++|..       .|+++++|+|.  ||||.||+    +|||++++++++++||+ ||+|++|+.+|++++
T Consensus       334 ~~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l  413 (831)
T 4a0g_A          334 MAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARF  413 (831)
T ss_dssp             HHHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhc
Confidence            334455677776642       37899999995  99999999    99999999999999999 999999999999998


Q ss_pred             ccccC-CCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHH-HHHhhhcCCCC-----CCCCceEEEEcCCc
Q 013008          131 THVSN-MYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFA-RKFQRHSNPDS-----KEPATEFVSFTNSF  200 (451)
Q Consensus       131 ~~~~~-~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a-~~~~~~~~~~~-----~~~~~~ii~~~~~y  200 (451)
                      .+..+ .+.+++..+|+++|++..+   .++|+|++||+|||+.|||++ +.|++.++...     .++|.+||.++++|
T Consensus       414 ~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~sy  493 (831)
T 4a0g_A          414 GHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSY  493 (831)
T ss_dssp             SSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCC
T ss_pred             ccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCc
Confidence            77643 3567889999999999987   689999999999999999999 67876544210     01377999999999


Q ss_pred             cCChhhhhhccCCCCcCC--------CCcCCC--------CCeeEee--------------CCC----------------
Q 013008          201 HGRTMGALALTSKEHYRS--------PFEPVM--------PGVNFVE--------------YGN----------------  234 (451)
Q Consensus       201 hg~~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~~--------------~~d----------------  234 (451)
                      ||.+.+++++++...++.        ++.+..        +++..++              ++|                
T Consensus       494 HG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (831)
T 4a0g_A          494 HGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLAR  573 (831)
T ss_dssp             CCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHH
T ss_pred             ccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhH
Confidence            999999999987654432        111100        1222222              233                


Q ss_pred             --HHHHHHhcC-------CCCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc
Q 013008          235 --IEATRKLIQ-------PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY  304 (451)
Q Consensus       235 --~~~le~~l~-------~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~  304 (451)
                        +++|++.|+       .+++++||+||+ ++++|+++++++||++|+++|++||++||+|||++||||+|++|+++++
T Consensus       574 ~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~  653 (831)
T 4a0g_A          574 IYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL  653 (831)
T ss_dssp             HHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHH
T ss_pred             HHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhc
Confidence              267888875       357999999997 9999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeeecccccCC-cccccccccHHHHhhccCC------CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------
Q 013008          305 GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------  370 (451)
Q Consensus       305 ~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------  370 (451)
                      |+.||++||||+|+|| +|+|++++++++++.+...      .|++||++||++|+|++++|++++++++.++       
T Consensus       654 gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~  733 (831)
T 4a0g_A          654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKT  733 (831)
T ss_dssp             SSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSB
T ss_pred             CCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999999 7999999999999998653      3889999999999999999999866543322       


Q ss_pred             -----------HHhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCH
Q 013008          371 -----------KLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISE  429 (451)
Q Consensus       371 -----------~~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~  429 (451)
                                 .++++|.+..+++.|+|+++++..          .+.++.+.|+++||++.|.+  +.+||+||+.+|+
T Consensus       734 l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g--~~lrl~pp~~~t~  811 (831)
T 4a0g_A          734 LRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLG--NVIYLMCGPCTSP  811 (831)
T ss_dssp             BCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCBT--TEEEEECCTTCCH
T ss_pred             HHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEecC--CEEEEECCCCCCH
Confidence                       234578888999999999999832          14568889999999999875  7999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013008          430 QELDQAVEILCKTLPVL  446 (451)
Q Consensus       430 e~i~~~l~~l~~~l~~~  446 (451)
                      ++|++++++|+++++++
T Consensus       812 e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          812 EICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998765

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=100.00  E-value=3.2e-59  Score=474.00  Aligned_cols=384  Identities=34%  Similarity=0.570  Sum_probs=310.5

Q ss_pred             chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 013008           61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI  140 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~  140 (451)
                      .++++.+...++....|.+.|+++++++|+++||.||++||||.+|+++.+|||+||+|++|+.++++++.+.+..+.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~  107 (433)
T 1z7d_A           28 TPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV  107 (433)
T ss_dssp             CHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEH
T ss_pred             cHHHHHHHHHHhcccccCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCH
Confidence            45567777777777778888999999999999999999999999999999999999999999999998865544445666


Q ss_pred             HHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhh-cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRH-SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~-~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ...+|+++|+++++.++|+|++||+||++.|+++++.|+.. ++..  +++++||+++++|||++..++.+++.+.++..
T Consensus       108 ~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~--~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~  185 (433)
T 1z7d_A          108 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIP--ENMAKIVVCKNNFSGRTLGCISASTTKKCTSN  185 (433)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC--TTCCEEEEETTC--------------------
T ss_pred             HHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCC--CCCCeEEEEeCCcCCcchhhhcccCCcccccc
Confidence            78999999999999999999999999999999999865321 1100  13589999999999999887777665444445


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                      +.|..+++..+|++|+++|+++++.+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|.++
T Consensus       186 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~  265 (433)
T 1z7d_A          186 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL  265 (433)
T ss_dssp             ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred             CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch
Confidence            55666788889999999999999645799999999999999888999999999999999999999999999999999988


Q ss_pred             cccccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------
Q 013008          300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------  370 (451)
Q Consensus       300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------  370 (451)
                      +++++++.||++||||++++| +|+|++++++++++.+.+..+.+||++||++++++.++|+.++++++.++        
T Consensus       266 ~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l  345 (433)
T 1z7d_A          266 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPF  345 (433)
T ss_dssp             GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             hhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            888899999999999999999 99999999999999988767889999999999999999998765444433        


Q ss_pred             ---H---HhCCCCcceecccceeEEEEecC---ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          371 ---K---LARNPHVKDVRGLGLIIGIEFDV---SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       371 ---~---~~~~~~~~~v~g~G~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                         +   .+++|.+..+++.|+++++++..   ...++++.|+++||++.|++. +.+|++|++.+|+|++++++++|++
T Consensus       346 ~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~  424 (433)
T 1z7d_A          346 LENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHD-KTIRLTPPLCITKEQLDECTEIIVK  424 (433)
T ss_dssp             HHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETT-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecCCC-CEEEEECCcCCCHHHHHHHHHHHHH
Confidence               2   12556666788999999999853   367899999999999998754 7899999999999999999999999


Q ss_pred             HHHHHh
Q 013008          442 TLPVLD  447 (451)
Q Consensus       442 ~l~~~~  447 (451)
                      +++++.
T Consensus       425 ~l~~~~  430 (433)
T 1z7d_A          425 TVKFFD  430 (433)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998764

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=2.7e-59  Score=477.23  Aligned_cols=380  Identities=32%  Similarity=0.557  Sum_probs=323.2

Q ss_pred             hHHHHHHHHhcccc---cCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC
Q 013008           62 NKEVMEAEKKLLVG---TYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY  137 (451)
Q Consensus        62 ~~~~~~~~~~~~~~---~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~  137 (451)
                      .+++.+.+.++.++   .|. +.|+++++|+|+++||.||++||||++++++++|||+||+|++|+.++++++.+....+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~   88 (452)
T 3n5m_A            9 TDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQ   88 (452)
T ss_dssp             HHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTS
T ss_pred             HHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCccccc
Confidence            45566677777777   443 46999999999999999999999999999999999999999999999998876533446


Q ss_pred             CCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCc
Q 013008          138 YSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY  216 (451)
Q Consensus       138 ~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~  216 (451)
                      .++...+|+++|++.++ ...|+|++||+||++.|+++++.++...+.+   ++++||+++++|||++..++++++...+
T Consensus        89 ~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~  165 (452)
T 3n5m_A           89 SHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEP---HRYKFMSRYRGYHGNTMATMAATGQAQR  165 (452)
T ss_dssp             EEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCT---TCCEEEEETTCCCCSSHHHHHSCCCGGG
T ss_pred             CCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCCHHHHhcCCchhh
Confidence            67779999999999986 2239999999999999999999874332221   4789999999999999999998887776


Q ss_pred             CCCCcCCCCCeeEeeC--------CC---------HHHHHHhcC---CCCeEEEEEccc-cCCCCccccCHHHHHHHHHH
Q 013008          217 RSPFEPVMPGVNFVEY--------GN---------IEATRKLIQ---PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDA  275 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~--------~d---------~~~le~~l~---~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l  275 (451)
                      +..+.+..+++.+++.        +|         +++|+++++   ++++++|++||+ ++ +|.++|+++||++|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l  244 (452)
T 3n5m_A          166 RYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHET  244 (452)
T ss_dssp             TTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHH
T ss_pred             ccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHH
Confidence            6667776677666553        55         899999986   457999999999 88 99889999999999999


Q ss_pred             HHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC------CCccCCCCCc
Q 013008          276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGS  348 (451)
Q Consensus       276 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~  348 (451)
                      |++||++||+||||+||||+|.+++++++++.||++||||++++| +|+|++++++++++.+..      ..+++|+++|
T Consensus       245 ~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~  324 (452)
T 3n5m_A          245 CQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN  324 (452)
T ss_dssp             HHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred             HHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence            999999999999999999999988899999999999999999999 999999999999999843      2467899999


Q ss_pred             HHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec--CC---------hHHHHHHH
Q 013008          349 PLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD--VS---------ATPVVDAC  403 (451)
Q Consensus       349 ~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~--~~---------~~~~~~~l  403 (451)
                      |++|+|++++|+.++++++.++              +++++|.+..+++.|+++++++.  ..         ..++++.|
T Consensus       325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l  404 (452)
T 3n5m_A          325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC  404 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence            9999999999998765554443              33566777889999999999882  11         24688999


Q ss_pred             HHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          404 RDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       404 ~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +++||++.|++.     ++++||+|++++|+|+|++++++|++++++
T Consensus       405 ~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          405 KEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             HHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            999999998762     478999999999999999999999998864

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=100.00  E-value=7.1e-59  Score=472.17  Aligned_cols=382  Identities=34%  Similarity=0.538  Sum_probs=327.1

Q ss_pred             chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 013008           61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI  140 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~  140 (451)
                      ..+++.+...++..+.|.+.|+++++++|+++||.||++||||.+|+++.+|||+||+|++|+.++++++.+.+..+.++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~  118 (439)
T 2oat_A           39 TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN  118 (439)
T ss_dssp             CHHHHHHHHHHHBCCCCCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEES
T ss_pred             CHHHHHHHHHHhcccccCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCH
Confidence            45667777777788888888999999999999999999999999999999999999999999999998865543334455


Q ss_pred             HHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhc-CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS-NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~-~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ...+++++|+++++.++++|++||+||++.|+++++.|+... +..  +++++||+++++|||++..++.+++.+.++..
T Consensus       119 ~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~--~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~  196 (439)
T 2oat_A          119 VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQ--KYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG  196 (439)
T ss_dssp             SHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC--TTCCEEEEETTCCCCSSHHHHTTCCCHHHHTT
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCC--CCCCeEEEEcCCCCCCCHhHhhcCCChhcccC
Confidence            688999999999999999999999999999999998764211 100  13489999999999999888777765444455


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                      +.|..+++..+|++|+++|+++++.+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|.++
T Consensus       197 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~  276 (439)
T 2oat_A          197 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL  276 (439)
T ss_dssp             SCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred             CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch
Confidence            66777888889999999999999645799999999999999889999999999999999999999999999999999988


Q ss_pred             cccccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------
Q 013008          300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------  370 (451)
Q Consensus       300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------  370 (451)
                      +++++++.||++||||++++| +|+|++++++++++.+....+.+||++||++++++.++|+.++++++.++        
T Consensus       277 ~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l  356 (439)
T 2oat_A          277 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIIL  356 (439)
T ss_dssp             GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             hHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            888999999999999999999 99999999999999988777889999999999999999998765544444        


Q ss_pred             --HHhC--CCCcceecccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          371 --KLAR--NPHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       371 --~~~~--~~~~~~v~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                        .++.  ++.+..+++.|+++++++..    ...++++.|+++||++.|.+. +.+|++|++.+|+|++++++++|+++
T Consensus       357 ~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~  435 (439)
T 2oat_A          357 RNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHG-DIIRFAPPLVIKEDELRESIEIINKT  435 (439)
T ss_dssp             HHHHTTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBSSS-SEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecCCC-CEEEEECccCCCHHHHHHHHHHHHHH
Confidence              1222  34444578899999999843    367899999999999998755 88999999999999999999999998


Q ss_pred             HHH
Q 013008          443 LPV  445 (451)
Q Consensus       443 l~~  445 (451)
                      +++
T Consensus       436 l~~  438 (439)
T 2oat_A          436 ILS  438 (439)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            864

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.8e-58  Score=468.63  Aligned_cols=385  Identities=23%  Similarity=0.346  Sum_probs=322.3

Q ss_pred             hhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCH
Q 013008           39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA  117 (451)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p  117 (451)
                      .+.|.++ ++++.+++|+|++++.+.+.         .+. +.|+++++++|+++||.||++||||.+++++++|||+||
T Consensus         5 ~~~s~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p   74 (434)
T 3l44_A            5 FTKSEAL-HKEALEHIVGGVNSPSRSFK---------AVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHP   74 (434)
T ss_dssp             CHHHHHH-HHHHHHHBGGGCSSGGGSSG---------GGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCH
T ss_pred             ChhHHHH-HHHHHhhCCCCcCccccccc---------cccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCH
Confidence            4467777 99999999999987766432         122 579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      +|++|+.+++++...  ..++++...+|+++|++.+ +.++|+|++||+||++.|+++++.++         ++++||++
T Consensus        75 ~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~---------~~~~vi~~  143 (434)
T 3l44_A           75 HITKAITTAAENGVL--YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYT---------GRTKIMKF  143 (434)
T ss_dssp             HHHHHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEE
T ss_pred             HHHHHHHHHHHhCcC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhh---------CCCEEEEE
Confidence            999999999987532  3466778999999999998 48999999999999999999999876         47899999


Q ss_pred             cCCccCChhhhhhccCCCCcCCCC--cC-----CCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHH
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPF--EP-----VMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      +++|||++..++..++........  .+     ..+++..+|++|+++|+++++  ++++++|++||+++++|.++++++
T Consensus       144 ~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~  223 (434)
T 3l44_A          144 AGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPG  223 (434)
T ss_dssp             TTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTT
T ss_pred             cCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHH
Confidence            999999998887766543211110  01     112567889999999999997  357999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---CCccCC
Q 013008          268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGST  344 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t  344 (451)
                      |+++|+++|++||++||+||||+|| ++|.+++++++++.||++||||++++|+|+|++++++++++.+..   ..+.+|
T Consensus       224 ~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t  302 (434)
T 3l44_A          224 FLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGT  302 (434)
T ss_dssp             HHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCT
T ss_pred             HHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCC
Confidence            9999999999999999999999999 999888889999999999999999999999999999999998865   247789


Q ss_pred             CCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC---------------C
Q 013008          345 FAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV---------------S  395 (451)
Q Consensus       345 ~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~---------------~  395 (451)
                      |++||++++|++++|+.++++++.++              +...++.+..+++.|.++++++..               .
T Consensus       303 ~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (434)
T 3l44_A          303 MAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEM  382 (434)
T ss_dssp             TTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHH
Confidence            99999999999999998876655544              222355566788999999998831               1


Q ss_pred             hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ..++.+.|+++||++.+++. +.+|+  ++.+|+|++++++++|++++++++.
T Consensus       383 ~~~~~~~l~~~Gv~v~~~~~-~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~~  432 (434)
T 3l44_A          383 FGKFFKLMLQEGVNLAPSKY-EAWFL--TTEHTKEDIEYTIEAVGRAFAALAD  432 (434)
T ss_dssp             HHHHHHHHHHTTEECCSSTT-CCEEC--CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCeEEeecCC-CcEEE--ecccCHHHHHHHHHHHHHHHHHHHh
Confidence            25688899999999998865 55666  7899999999999999999988764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=3.6e-58  Score=460.51  Aligned_cols=370  Identities=41%  Similarity=0.752  Sum_probs=327.2

Q ss_pred             HhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 013008           70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL  149 (451)
Q Consensus        70 ~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l  149 (451)
                      .++..+.|.+.|+++++++|+++||.||++||||.+++++++|||+||+|++|+.+++++..+.+..++.+...++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l   87 (395)
T 3nx3_A            8 QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNL   87 (395)
T ss_dssp             CCSCBCGGGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHH
T ss_pred             hhhhhhccCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHH
Confidence            34566778889999999999999999999999999999999999999999999999998876655556778899999999


Q ss_pred             hhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE
Q 013008          150 VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF  229 (451)
Q Consensus       150 ~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (451)
                      ++.++.++++|++||+||++.|+++++.++...+.    ++++||+++++|||++..+..+++.+.+...+.+...++..
T Consensus        88 a~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (395)
T 3nx3_A           88 AKASALERVFFTNSGTESIEGAMKTARKYAFNKGV----KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKF  163 (395)
T ss_dssp             HHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTC----TTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEE
T ss_pred             HHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCC----CCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEE
Confidence            99999999999999999999999999877543321    47899999999999999988888766655556677778889


Q ss_pred             eeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc
Q 013008          230 VEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD  309 (451)
Q Consensus       230 ~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd  309 (451)
                      ++++|+++|+++++ +++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|..++.+++++.||
T Consensus       164 ~~~~d~~~l~~~l~-~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d  242 (395)
T 3nx3_A          164 AKYNDISSVEKLVN-EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPD  242 (395)
T ss_dssp             ECTTCHHHHHTTCC-TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred             eCCCCHHHHHHhcc-CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCC
Confidence            99999999999997 47899999999999999999999999999999999999999999999999998888889999999


Q ss_pred             eeeecccccCCcccccccccHHH-HhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhC
Q 013008          310 IMTLAKPLAGGLPIGAALVTEKV-ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLAR  374 (451)
Q Consensus       310 i~t~sK~lg~G~~iG~v~~~~~i-~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~  374 (451)
                      ++||||++++|+|+|++++++++ ++.+.+..+.+|+++||++++++.++|+.++++++.++              +..+
T Consensus       243 ~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  322 (395)
T 3nx3_A          243 IMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINE  322 (395)
T ss_dssp             EEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999 88888777889999999999999999997754444433              2234


Q ss_pred             CCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          375 NPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       375 ~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +|.+..+++.|.++++++..  ...++.+.|+++||++.+++. +.+||+|++.+|+|++++++++|++++++
T Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          323 FDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENALLLISCGE-NDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             CTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            66677788999999999853  678899999999999999875 89999999999999999999999998864

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=100.00  E-value=1.3e-58  Score=469.01  Aligned_cols=385  Identities=23%  Similarity=0.363  Sum_probs=324.1

Q ss_pred             chhhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCC
Q 013008           37 MVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGD  116 (451)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~  116 (451)
                      |+.+.|.++ ++++.+++|+|+++..+.+.         .+.+.|+++++++|+++||.||++||||++++++++|||+|
T Consensus         2 ~~~~~s~~~-~~~~~~~~~~g~~~~~~~~~---------~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~   71 (429)
T 3k28_A            2 RKFDKSIAA-FEEAQDLMPGGVNSPVRAFK---------SVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHAN   71 (429)
T ss_dssp             CCCHHHHHH-HHHHTTTSGGGSSSGGGGCG---------GGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSC
T ss_pred             CCChhHHHH-HHHHHhhcCCCcCccccccc---------ccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCC
Confidence            345567888 99999999999988776532         23468999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS  195 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~  195 (451)
                      |+|++|+.+++++..+  ..++++...+|+++|++.+ +.++++|++||+||++.|+++++.++         ++++||+
T Consensus        72 p~v~~A~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~---------~~~~vi~  140 (429)
T 3k28_A           72 DRVVEALKAVAERGTS--FGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYT---------GRNKILK  140 (429)
T ss_dssp             HHHHHHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---------TCCEEEE
T ss_pred             HHHHHHHHHHHhhCcC--cCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhh---------CCCEEEE
Confidence            9999999999988543  3466778999999999998 58999999999999999999999876         4789999


Q ss_pred             EcCCccCChhhhhhccCCCCcCCCC--cCC-----CCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCH
Q 013008          196 FTNSFHGRTMGALALTSKEHYRSPF--EPV-----MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATK  266 (451)
Q Consensus       196 ~~~~yhg~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~  266 (451)
                      ++++|||++..++..++........  .+.     ...+..++++|+++|+++++  ++++++|++||+++++|.+++++
T Consensus       141 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~  220 (429)
T 3k28_A          141 FIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQP  220 (429)
T ss_dssp             EETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCT
T ss_pred             ECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCH
Confidence            9999999998887766533211111  111     12566789999999999997  35799999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC---CccC
Q 013008          267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGS  343 (451)
Q Consensus       267 ~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~  343 (451)
                      +|+++|+++|++||++||+||||+|| ++|.+++.+++++.||++||||++++|+|+|++++++++++.+...   .+.+
T Consensus       221 ~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~  299 (429)
T 3k28_A          221 GFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAG  299 (429)
T ss_dssp             THHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCC
T ss_pred             HHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccC
Confidence            99999999999999999999999999 9998888889999999999999999899999999999999988643   3678


Q ss_pred             CCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC--------------
Q 013008          344 TFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS--------------  395 (451)
Q Consensus       344 t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~--------------  395 (451)
                      |+++||++++|++++|+.++ +++.++              +...++.+..+++.|+++++++...              
T Consensus       300 t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  378 (429)
T 3k28_A          300 TLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQ  378 (429)
T ss_dssp             TTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHH
T ss_pred             CCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHH
Confidence            99999999999999999765 554444              2234566677899999999987311              


Q ss_pred             -hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          396 -ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       396 -~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                       ..++++.|+++||++.|++. +.+|+  ++.+|++++++++++|++++++++
T Consensus       379 ~~~~~~~~l~~~Gv~v~~~~~-~~~r~--~~~~t~e~i~~~l~~l~~~l~~~~  428 (429)
T 3k28_A          379 FFAAYYREMVEQGVFLPPSQF-EGLFL--STVHSDADIEATIAAAEIAMSKLK  428 (429)
T ss_dssp             HHHHHHHHHHHTTEECCSSTT-SCBCC--CTTCCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHCCeEEecCCC-CCEEE--ECCCCHHHHHHHHHHHHHHHHHHh
Confidence             26788999999999998765 45565  789999999999999999998654

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=100.00  E-value=7.5e-63  Score=500.63  Aligned_cols=371  Identities=26%  Similarity=0.313  Sum_probs=316.3

Q ss_pred             hccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHH
Q 013008           40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW  119 (451)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v  119 (451)
                      ..|.++ ++++++++|+|+++..+.+            .++|+++++++|+++||+||++||||++++++.+|||+||+|
T Consensus        55 ~~s~~l-~~~~~~~~~~g~~~~~~~~------------~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V  121 (465)
T 2yky_A           55 PVSAGH-HERARRSMPGGNTRSILFH------------RPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVI  121 (465)
Confidence            366777 9999999999998877654            256999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 013008          120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN  198 (451)
Q Consensus       120 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~  198 (451)
                      ++|+.+++++...  ..++++...+|+++|++++ +.++++|++||+||++.|+++++.++         +|++||++++
T Consensus       122 ~~Av~~q~~~~~~--~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~t---------gr~~ii~~~~  190 (465)
T 2yky_A          122 RAAVERALAVGLN--LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAIT---------GRKTVLAFDG  190 (465)
Confidence            9999999987432  3456777899999999999 58999999999999999999999876         4889999999


Q ss_pred             CccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008          199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC  276 (451)
Q Consensus       199 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~  276 (451)
                      +|||++..++  ++ +. ..+. +  ..+..+|+||+++|+++++.  +++++|++||+++++|.++++++|+++|+++|
T Consensus       191 ~yHG~~~~~~--sg-~~-~~g~-~--~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~  263 (465)
T 2yky_A          191 GYHGGLLNFA--SG-HA-PTNA-P--YHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEA  263 (465)
Confidence            9999998776  32 10 1111 1  14556788999999999973  57999999999999998899999999999999


Q ss_pred             HHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC-----CCccCCCCCcHHH
Q 013008          277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-----GDHGSTFAGSPLV  351 (451)
Q Consensus       277 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-----~~~~~t~~~~~~~  351 (451)
                      ++||++||+||||+ | |+|.+++++++++.||++||||++++|+|+|++++++++++.+.+     ..+.+||++||++
T Consensus       264 ~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla  341 (465)
T 2yky_A          264 SRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILT  341 (465)
Confidence            99999999999999 7 899888899999999999999999999999999999999999876     2477899999999


Q ss_pred             HHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC---------------ChHHHHHH
Q 013008          352 CNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV---------------SATPVVDA  402 (451)
Q Consensus       352 ~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~---------------~~~~~~~~  402 (451)
                      |+|++++|+.++++++.++              +.++++.+..+++.|+|+++++..               ....+++.
T Consensus       342 ~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~  421 (465)
T 2yky_A          342 MSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFH  421 (465)
Confidence            9999999999877766655              222344455688999999998732               13568889


Q ss_pred             HHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          403 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       403 l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      |+++||++.|++. ..    |++++|++||++++++|+++++++++
T Consensus       422 ll~~GV~v~p~~~-~~----~s~~~t~edid~~l~~l~~~l~~~~~  462 (465)
T 2yky_A          422 MLRKGIYLAPRGM-YA----LSLEIADAGRDAFAEALADFIGEQRA  462 (465)
Confidence            9999999998764 22    78999999999999999999987753

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=100.00  E-value=2.6e-57  Score=459.37  Aligned_cols=380  Identities=23%  Similarity=0.350  Sum_probs=309.9

Q ss_pred             ccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHH
Q 013008           41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI  120 (451)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~  120 (451)
                      .|.++ ++++.+++|+|+++..+.+         ..|.+.|+++++++|+++||.||++||||.+++++++|||+||+|+
T Consensus         6 ~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~   75 (429)
T 4e77_A            6 KSENL-YAQAQQLIPGGVNSPVRAF---------TGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIR   75 (429)
T ss_dssp             HHHHH-HHHHHHHSGGGCSSGGGGT---------TTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHH
T ss_pred             hhHHH-HHHHHhhcCCCcCcccccc---------cccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHH
Confidence            45667 8999999999987665432         2345689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 013008          121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS  199 (451)
Q Consensus       121 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~  199 (451)
                      +|+.+++++..+  ..++++...+|+++|++.++ .++++|++||+||++.|+++++.++         ++++||+++++
T Consensus        76 ~A~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~---------~~~~ii~~~~~  144 (429)
T 4e77_A           76 QAVIEAVERGLS--FGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYT---------GRDKIIKFEGC  144 (429)
T ss_dssp             HHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTC
T ss_pred             HHHHHHHHhCcc--cCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhh---------CCCEEEEEcCc
Confidence            999999987543  33567789999999999984 8999999999999999999999876         47899999999


Q ss_pred             ccCChhhhhhccCCCCc--CC----CC-cCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHH
Q 013008          200 FHGRTMGALALTSKEHY--RS----PF-EPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       200 yhg~~~~~~~~~~~~~~--~~----~~-~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      |||++...+...+....  ..    .+ ......+..++++|+++|+++++  ++++++|++||+++++|.+.++++|++
T Consensus       145 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~  224 (429)
T 4e77_A          145 YHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLP  224 (429)
T ss_dssp             CCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHH
T ss_pred             cCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHH
Confidence            99999765543321110  00    00 11223456788999999999997  357999999999999999999999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC---CccCCCCC
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTFAG  347 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~~~  347 (451)
                      +|+++|++||++||+||||+|| |+|..++.+++++.||++||||++++|+|+|++++++++++.+...   .+.+||++
T Consensus       225 ~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~  303 (429)
T 4e77_A          225 GLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSG  303 (429)
T ss_dssp             HHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCC
T ss_pred             HHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCC
Confidence            9999999999999999999999 9998888899999999999999999999999999999999998753   47789999


Q ss_pred             cHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC----------------hH
Q 013008          348 SPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS----------------AT  397 (451)
Q Consensus       348 ~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~----------------~~  397 (451)
                      ||++++++.++|+.++++++.++              +...++....+++.|+++++++...                ..
T Consensus       304 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (429)
T 4e77_A          304 NPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFK  383 (429)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHH
Confidence            99999999999998866655544              2233465667889999999998432                16


Q ss_pred             HHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          398 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       398 ~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ++++.|+++||++.+++. .  |+++++.+|+|++++++++|++++++
T Consensus       384 ~~~~~l~~~Gi~v~~~~~-~--~~~~~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          384 RFFHLMLEEGVYLAPSAF-E--AGFMSLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             HHHHHHHHTTEECCSSTT-S--CEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCeEEeecCC-C--CEEEeccCCHHHHHHHHHHHHHHHHh
Confidence            789999999999998865 3  34568999999999999999998864

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=100.00  E-value=1.5e-56  Score=452.74  Aligned_cols=380  Identities=39%  Similarity=0.707  Sum_probs=312.4

Q ss_pred             HHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHH
Q 013008           63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ  142 (451)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~  142 (451)
                      ..+++...++.++.|.+.|+++++++|+++||.||++||||.+++++.++||+||+|++|+.++++++.+.+..+..+..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~  101 (420)
T 2pb2_A           22 AITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPA  101 (420)
T ss_dssp             -----------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHH
T ss_pred             HHHHHHHHHhhhccccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHH
Confidence            34445556667777888899999999999999999999999999999999999999999999999886554444567779


Q ss_pred             HHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcC
Q 013008          143 IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP  222 (451)
Q Consensus       143 ~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  222 (451)
                      .+|+++|+++++.++|+|++||+||++.|+++++.++..++.+   ++++||+++++|||++..++.+++...+..++.|
T Consensus       102 ~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~---g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p  178 (420)
T 2pb2_A          102 LRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSP---FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGP  178 (420)
T ss_dssp             HHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCT---TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSS
T ss_pred             HHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCC---CCCEEEEEeCCcCCcCHHHHHhcCCccccccCCC
Confidence            9999999999999999999999999999999998764332221   3568999999999999888777665544455667


Q ss_pred             CCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccc
Q 013008          223 VMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE  302 (451)
Q Consensus       223 ~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~  302 (451)
                      ..+++..++++|+++|++++++ ++++|++||+++++|.++++.+++++|+++|++||++||+||+|+|||++|.+++++
T Consensus       179 ~~~~~~~~~~~d~~~le~~i~~-~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~  257 (420)
T 2pb2_A          179 KPADIIHVPFNDLHAVKAVMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYM  257 (420)
T ss_dssp             CCSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHH
T ss_pred             CCCCeEEecCCCHHHHHHHhcc-CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHH
Confidence            7788888999999999999974 799999999999888888999999999999999999999999999999999877778


Q ss_pred             ccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------H
Q 013008          303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------K  371 (451)
Q Consensus       303 ~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~  371 (451)
                      .+++.||++||||++++|+|+|++++++++++.+....+..||++|+++++++.++|+.++++++.++           +
T Consensus       258 ~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L  337 (420)
T 2pb2_A          258 HYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHL  337 (420)
T ss_dssp             HHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999887666788999999999999999998876655544           1


Q ss_pred             Hh---CCCCcceecccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          372 LA---RNPHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       372 ~~---~~~~~~~v~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      .+   ++|.+..+++.|.++++++..    ...++.+.|+++||++.+++. +.+|++|++.+++|++++++++|+++++
T Consensus       338 ~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-~~iRl~~~~~~t~eei~~~~~~l~~~l~  416 (420)
T 2pb2_A          338 QAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGA-DVMRFAPSLVVEEADIHEGMQRFAQAVG  416 (420)
T ss_dssp             HHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            11   345556678899999999842    467899999999999999864 8899999999999999999999999988


Q ss_pred             HHh
Q 013008          445 VLD  447 (451)
Q Consensus       445 ~~~  447 (451)
                      ++.
T Consensus       417 ~~~  419 (420)
T 2pb2_A          417 KVV  419 (420)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            753

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=100.00  E-value=9.5e-57  Score=454.96  Aligned_cols=381  Identities=23%  Similarity=0.330  Sum_probs=320.1

Q ss_pred             hccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHH
Q 013008           40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW  119 (451)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v  119 (451)
                      ..|.++ ++++.++.|+|+++..+.+         ..+.+.|+++++|+|+++||.||++||||.++++++++||+||+|
T Consensus         4 ~~s~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v   73 (427)
T 3fq8_A            4 IKSDEI-FAAAQKLMPGGVSSPVRAF---------KSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEV   73 (427)
T ss_dssp             HHHHHH-HHHHTTTSGGGSSSGGGGC---------TTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHH
T ss_pred             chHHHH-HHHHHhhcCCCcccccccc---------cccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHH
Confidence            456777 9999999999987765532         134578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 013008          120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN  198 (451)
Q Consensus       120 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~  198 (451)
                      ++|+.+++++..+  ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.++         ++++||++++
T Consensus        74 ~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~---------~~~~vi~~~~  142 (427)
T 3fq8_A           74 IEALKVAMEKGTS--FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT---------GRDKIIKFEG  142 (427)
T ss_dssp             HHHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEEET
T ss_pred             HHHHHHHHHhCCC--cCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh---------CCCEEEEECC
Confidence            9999999987644  22467779999999999984 8899999999999999999999886         3789999999


Q ss_pred             CccCChhhhhhccCCCCcCC--CCcCC-----CCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHH
Q 013008          199 SFHGRTMGALALTSKEHYRS--PFEPV-----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFL  269 (451)
Q Consensus       199 ~yhg~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l  269 (451)
                      +|||++..+...++......  +..+.     ..++..++++|+++|+++++.  +++++|++||+++++|.+.++++|+
T Consensus       143 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l  222 (427)
T 3fq8_A          143 CYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFL  222 (427)
T ss_dssp             CCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHH
T ss_pred             CcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHH
Confidence            99999987766654322110  11111     123667899999999999973  4799999999999999999999999


Q ss_pred             HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC---CccCCCC
Q 013008          270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTFA  346 (451)
Q Consensus       270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~~  346 (451)
                      ++|+++|++||++||+||+|+|| ++|..++.+++++.||++||||++++|+|+|++++++++++.+...   .+.+|++
T Consensus       223 ~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~  301 (427)
T 3fq8_A          223 EGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLS  301 (427)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTT
T ss_pred             HHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCC
Confidence            99999999999999999999999 9998888889999999999999999999999999999999988753   4778999


Q ss_pred             CcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC---------------hH
Q 013008          347 GSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS---------------AT  397 (451)
Q Consensus       347 ~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~---------------~~  397 (451)
                      +||++++++.++|+.++++++.++              +...++....+++.|+++++++...               ..
T Consensus       302 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (427)
T 3fq8_A          302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFS  381 (427)
T ss_dssp             TCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHH
Confidence            999999999999998866655544              2223444456788999999988321               35


Q ss_pred             HHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          398 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       398 ~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ++++.|+++||++.+++.   .|+++++.+|+|++++++++|++++++
T Consensus       382 ~l~~~l~~~Gi~v~~~~~---~r~~~~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          382 RFHRGMLEQGIYLAPSQF---EAGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             HHHHHHHHTTEECCSSTT---SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcEEecCCC---CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence            788999999999998765   267789999999999999999999875

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=7.2e-57  Score=456.27  Aligned_cols=372  Identities=31%  Similarity=0.474  Sum_probs=296.6

Q ss_pred             cccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHh
Q 013008           72 LLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLV  150 (451)
Q Consensus        72 ~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~  150 (451)
                      +.++.|.+.|+++++|+|+++||.||++||||.+++++++|||+||+|++|+.+++++..+++. .++++...+|+++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la   82 (430)
T 3i4j_A            3 NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLA   82 (430)
T ss_dssp             CBCCSSSSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHH
T ss_pred             ccccCCCCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence            3455666789999999999999999999999999999999999999999999999988665433 456677999999999


Q ss_pred             hccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC--C
Q 013008          151 ACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--G  226 (451)
Q Consensus       151 ~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~  226 (451)
                      +.++  .++|+|++||+||++.|+++++.+...++..   ++++||+++++|||++..+..+++...+...+.+..+  +
T Consensus        83 ~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (430)
T 3i4j_A           83 RFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP---GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEA  159 (430)
T ss_dssp             HHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTC-------------------------CGGG
T ss_pred             HhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCC
Confidence            9985  7899999999999999999998775443322   5789999999999999888887776655555666666  7


Q ss_pred             eeEeeCC--------CHHHHHHhcCC---CCeEEEEEccccC-CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008          227 VNFVEYG--------NIEATRKLIQP---GKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR  294 (451)
Q Consensus       227 ~~~~~~~--------d~~~le~~l~~---~~~aavi~ep~~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  294 (451)
                      +..++++        |+++|+++++.   +++++|++||+++ ++|.++++++++++|+++|++||++||+||||+|||+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~  239 (430)
T 3i4j_A          160 WPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGR  239 (430)
T ss_dssp             SCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred             ceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence            7777776        45899998862   6789999999999 9999999999999999999999999999999999999


Q ss_pred             cccccccccc-CCCcceeeecccccCC-cccccccccHHHHhhccCC----CccCCCCCcHHHHHHHHHHHHHhcChHHH
Q 013008          295 TGYLWAHEHY-GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFL  368 (451)
Q Consensus       295 ~G~~~~~~~~-~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~~~~~~  368 (451)
                      +|..++.+++ ++.||++||||++++| +|+|++++++++++.+...    .+.+||++||++|+|++++|+.++++++.
T Consensus       240 ~g~~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~  319 (430)
T 3i4j_A          240 CGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLT  319 (430)
T ss_dssp             TSSSSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccchhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHH
Confidence            9998888999 9999999999999999 9999999999999988653    57789999999999999999977555444


Q ss_pred             HH--------------HHhCCCCcceecccceeEEEEec-----------CChHHHHHHHHHCCceeeec-----CC-CC
Q 013008          369 AS--------------KLARNPHVKDVRGLGLIIGIEFD-----------VSATPVVDACRDSGLLVLTA-----GK-GN  417 (451)
Q Consensus       369 ~~--------------~~~~~~~~~~v~g~G~~~~~~~~-----------~~~~~~~~~l~~~Gv~~~~~-----~~-~~  417 (451)
                      ++              +.+++|.+..+++.|+++++++.           ....++++.|+++||++.|+     +. ++
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~  399 (430)
T 3i4j_A          320 GAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGD  399 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------C
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCC
Confidence            33              23356777788999999999883           11367899999999999886     11 47


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          418 VVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       418 ~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .+||+|++.+|+|++++++++|+++++++
T Consensus       400 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          400 HLLLGPPLSITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999865

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=100.00  E-value=6.6e-56  Score=450.38  Aligned_cols=358  Identities=30%  Similarity=0.526  Sum_probs=304.5

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhccC--C-
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--A-  155 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~--~-  155 (451)
                      .|+++++++|.++||.+|++||||.+++++.+|||+||+|++|+.+++++..+.+ ..+.++.+.+++++|+++++  . 
T Consensus        25 ~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~  104 (439)
T 3dxv_A           25 FPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGT  104 (439)
T ss_dssp             SCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTT
T ss_pred             CCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence            6899999999999999999999999999999999999999999999998865433 34566779999999999984  5 


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC--cCCCCcCCCCCeeEeeCC
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH--YRSPFEPVMPGVNFVEYG  233 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  233 (451)
                      ++++|++||++|++.|+++++.++         ++++||+++++|||++..++.+++...  ++..+.+..+++..++++
T Consensus       105 ~~v~~~~ggsea~~~al~~~~~~~---------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (439)
T 3dxv_A          105 HKIWFGHSGSDANEAAYRAIVKAT---------GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR  175 (439)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHH---------SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS
T ss_pred             CEEEEeCCHHHHHHHHHHHHHHHh---------CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC
Confidence            799999999999999999988776         378899999999999999888876554  555555555556666766


Q ss_pred             ----------CHHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc
Q 013008          234 ----------NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA  300 (451)
Q Consensus       234 ----------d~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~  300 (451)
                                |+++|+++++   .+++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|||++|.+++
T Consensus       176 ~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~  255 (439)
T 3dxv_A          176 PYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC  255 (439)
T ss_dssp             CBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSG
T ss_pred             cccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhH
Confidence                      6999999993   457999999999999999999999999999999999999999999999999998888


Q ss_pred             ccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008          301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       301 ~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------  370 (451)
                      .+++++.||++||||++++|+|+|++++++++++.+....+.+|+ +||+++++++++|+.++++++.++          
T Consensus       256 ~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~  334 (439)
T 3dxv_A          256 FEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRD  334 (439)
T ss_dssp             GGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999877778899 999999999999997755544433          


Q ss_pred             ----HHhCCCCcceecccceeEEEEec----------CChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHH
Q 013008          371 ----KLARNPHVKDVRGLGLIIGIEFD----------VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       371 ----~~~~~~~~~~v~g~G~~~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~  435 (451)
                          +...++.+..+++.|.++++++.          ....++.+.|+++||++.+++. ++.+||+|++.+|+++++++
T Consensus       335 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~  414 (439)
T 3dxv_A          335 GLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKA  414 (439)
T ss_dssp             HHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHH
T ss_pred             HHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHH
Confidence                22346767778899999999872          1246788999999999998764 47899999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 013008          436 VEILCKTLPVLD  447 (451)
Q Consensus       436 l~~l~~~l~~~~  447 (451)
                      +++|+++++++.
T Consensus       415 l~~l~~~l~~~~  426 (439)
T 3dxv_A          415 LDLLDRAFSELS  426 (439)
T ss_dssp             HHHHHHHHHTGG
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=100.00  E-value=1.6e-54  Score=439.70  Aligned_cols=380  Identities=23%  Similarity=0.332  Sum_probs=310.1

Q ss_pred             ccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHH
Q 013008           41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI  120 (451)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~  120 (451)
                      .|.++ ++++.++.++|+.+..+.+           +.++|+++++++|+++||.||++||||.++++++++||+||+|+
T Consensus        11 ~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~   78 (434)
T 2epj_A           11 KSRML-FERTKELFPGGVNSPVRAA-----------VKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVL   78 (434)
T ss_dssp             HHHHH-HHHHTTTSGGGSSSGGGGG-----------CSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHH
T ss_pred             chHHH-HHHHHhhcCCCcCcccccc-----------cCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHH
Confidence            45556 8888888888876655432           02569999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 013008          121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS  199 (451)
Q Consensus       121 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~  199 (451)
                      +|+.+++++..+  ..+..+...+++++|++++ +.++|+|++||+||++.|+++++.++         ++++||+++++
T Consensus        79 ~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~---------~~~~vi~~~~~  147 (434)
T 2epj_A           79 EAVEEALARGWL--YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYT---------GRDLILKFDGC  147 (434)
T ss_dssp             HHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEEETC
T ss_pred             HHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh---------CCCeEEEEcCC
Confidence            999999987432  3356777899999999998 68999999999999999999988776         37889999999


Q ss_pred             ccCChhhhhhccCCCCcC--CCCcC-C----CCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHH
Q 013008          200 FHGRTMGALALTSKEHYR--SPFEP-V----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       200 yhg~~~~~~~~~~~~~~~--~~~~~-~----~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      |||++..++..++.....  .+... .    ...+..++++|+++|+++++.  +++++|++||+++++|.++++++|++
T Consensus       148 yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~  227 (434)
T 2epj_A          148 YHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLA  227 (434)
T ss_dssp             CCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHH
T ss_pred             cCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHH
Confidence            999988776554321100  00000 0    124667888999999999973  47999999999999998888999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC-C--CccCCCCC
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-G--DHGSTFAG  347 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~--~~~~t~~~  347 (451)
                      +|+++|++||++||+||+|+|| ++|..++++++++.||++||||++++|+|+|++++++++++.+.. .  .+.+||++
T Consensus       228 ~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~  306 (434)
T 2epj_A          228 ALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNA  306 (434)
T ss_dssp             HHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCc
Confidence            9999999999999999999999 788777788889999999999999999999999999999998875 2  35689999


Q ss_pred             cHHHHHHHHHHHHHhcChHHHHH-----------HH---hCCCCcceecccceeEEEEecC---------------ChHH
Q 013008          348 SPLVCNAAIAVLDKISNPAFLAS-----------KL---ARNPHVKDVRGLGLIIGIEFDV---------------SATP  398 (451)
Q Consensus       348 ~~~~~aaa~aal~~~~~~~~~~~-----------~~---~~~~~~~~v~g~G~~~~~~~~~---------------~~~~  398 (451)
                      ||++++++.++|+.++++++.++           +.   .+++....+++.|.++++++..               ...+
T Consensus       307 ~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~  386 (434)
T 2epj_A          307 HPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVK  386 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHH
Confidence            99999999999998754444433           11   1224444578899999999843               1457


Q ss_pred             HHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       399 ~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +.+.|+++||++.+++. .  |+++++.+|++++++++++|+++++++.
T Consensus       387 ~~~~l~~~Gv~v~~~~~-~--~~~~~~~~t~e~i~~~l~~l~~~l~~~~  432 (434)
T 2epj_A          387 LHEEMLRRGVFIAPSNL-E--AVFTGLPHQGEALEIAVEGLRSSLKTVL  432 (434)
T ss_dssp             HHHHHHHTTEECCSSTT-S--CEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCeEEeccCC-C--cEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence            88999999999998765 3  4567899999999999999999998764

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=3.1e-54  Score=436.21  Aligned_cols=379  Identities=27%  Similarity=0.398  Sum_probs=311.0

Q ss_pred             hhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHH
Q 013008           39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD  118 (451)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~  118 (451)
                      ...|.++ ++++.+++++|++++.+.+.         .|...|+++++++|+++||.||++||||.++.+++++||+||+
T Consensus         3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~   72 (424)
T 2e7u_A            3 RPISEAY-FQEAKRHIPGGVSSPVRAFK---------AVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPK   72 (424)
T ss_dssp             CHHHHHH-HHHHHHHSGGGSSSGGGGCT---------TTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHH
T ss_pred             CchHHHH-HHHHHHhcCCCcCCcceecc---------ccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHH
Confidence            3456677 89999999999887776431         2345699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 013008          119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT  197 (451)
Q Consensus       119 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~  197 (451)
                      |++|+.+++++..+  ..+.++...+++++|++++ +.++|+|++||+||++.|+++++.+++         +++||+++
T Consensus        73 v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~---------~~~vi~~~  141 (424)
T 2e7u_A           73 VLARVRETLERGLT--FGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTG---------RPYIVKFR  141 (424)
T ss_dssp             HHHHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEET
T ss_pred             HHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEEC
Confidence            99999999987432  2356777899999999999 689999999999999999999888773         78899999


Q ss_pred             CCccCChhhhhhccCCCC--cCCCCcCC-----CCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHH
Q 013008          198 NSFHGRTMGALALTSKEH--YRSPFEPV-----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEF  268 (451)
Q Consensus       198 ~~yhg~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~  268 (451)
                      |+|||++..++...+...  +..+....     ...+..++++|+++|+++++.  +++++|++||+++++|.++++++|
T Consensus       142 ~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~  221 (424)
T 2e7u_A          142 GNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDF  221 (424)
T ss_dssp             TCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHH
T ss_pred             CCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHH
Confidence            999999887765543211  10001000     124567788999999999862  478999999999999988899999


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC-C--CccCCC
Q 013008          269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-G--DHGSTF  345 (451)
Q Consensus       269 l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~--~~~~t~  345 (451)
                      +++|+++ ++||++||+||+|+|| ++|..++++++++.||++||||++++|+|+|++++++++++.+.. .  .+.+||
T Consensus       222 l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~  299 (424)
T 2e7u_A          222 LKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTL  299 (424)
T ss_dssp             HHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTT
T ss_pred             HHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCC
Confidence            9999999 9999999999999999 888777788889999999999999999999999999999998875 2  367799


Q ss_pred             CCcHHHHHHHHHHHHHhcC-hHHHHH-----------H---HhCCCCcceecccceeEEEEecC---------------C
Q 013008          346 AGSPLVCNAAIAVLDKISN-PAFLAS-----------K---LARNPHVKDVRGLGLIIGIEFDV---------------S  395 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~~~-~~~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~~---------------~  395 (451)
                      ++||++++++.++|+.+++ +++.++           +   .++++.+..+++.|+++++++..               .
T Consensus       300 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~  379 (424)
T 2e7u_A          300 SGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTEL  379 (424)
T ss_dssp             CSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHH
Confidence            9999999999999998755 555444           1   12245444578899999999842               1


Q ss_pred             hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ..++++.|+++||++.+++. .  |+++++.+|++++++++++|++++
T Consensus       380 ~~~~~~~l~~~Gv~v~~~~~-~--~~~~~~~~t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          380 FKRFFHGLLDRGIYWPPSNF-E--AAFLSVAHREEDVEKTLEALRKAL  424 (424)
T ss_dssp             HHHHHHHHHTTTEECCSSSS-S--CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCeEEeccCC-C--ceEeeccCCHHHHHHHHHHHHHhC
Confidence            34688899999999998764 3  456789999999999999998763

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=100.00  E-value=6.7e-54  Score=434.77  Aligned_cols=374  Identities=31%  Similarity=0.516  Sum_probs=306.8

Q ss_pred             HHHHHHHHhcccccCCC-CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 013008           63 KEVMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP  141 (451)
Q Consensus        63 ~~~~~~~~~~~~~~~~~-~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~  141 (451)
                      +++.++..++....+.. .|+++.+++|+++||.+|++||||.++.++.+|||+||+|++|+.+++++..+.+..+.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~   86 (433)
T 1zod_A            7 ATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRP   86 (433)
T ss_dssp             HHHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHH
T ss_pred             HHHHHHHHHhhcccccccCCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHH
Confidence            33444444444434433 48899999999999999999999999999999999999999999999988654334556777


Q ss_pred             HHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..+++++|+++++  .++|+|++||+||++.|+++++.++         ++++||+++|+|||++..++..++... ...
T Consensus        87 ~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~---------~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~  156 (433)
T 1zod_A           87 VVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT---------GKYEIVGFAQSWHGMTGAAASATYSAG-RKG  156 (433)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH---------TCCEEEEETTCCCCSSHHHHHTCCSSC-CSS
T ss_pred             HHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhh---------CCCeEEEECCCcCCCChhHHhhcCCcc-ccc
Confidence            8999999999986  7899999999999999999888665         367899999999999988887765432 223


Q ss_pred             CcCCCCCeeEee--------CC---------CHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHh
Q 013008          220 FEPVMPGVNFVE--------YG---------NIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA  279 (451)
Q Consensus       220 ~~~~~~~~~~~~--------~~---------d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  279 (451)
                      +.+...++..++        ++         |+++|+++++.   +++++|++||+++++|.++++++++++|+++|++|
T Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~  236 (433)
T 1zod_A          157 VGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR  236 (433)
T ss_dssp             SCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred             cCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh
Confidence            334444554443        33         38999998862   57899999999999898889999999999999999


Q ss_pred             CCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHH
Q 013008          280 GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIA  357 (451)
Q Consensus       280 g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~a  357 (451)
                      |++||+||||+|||++|..++++.+++.||+++|||++++|+|+|++++++++++.+....  +++|+++|+++++|+.+
T Consensus       237 ~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a  316 (433)
T 1zod_A          237 GMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLR  316 (433)
T ss_dssp             TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHH
T ss_pred             CCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHH
Confidence            9999999999999999987777888999999999999999999999999999998886533  44899999999999999


Q ss_pred             HHHHhcChHHHHH-----------H---HhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCceeeec
Q 013008          358 VLDKISNPAFLAS-----------K---LARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTA  413 (451)
Q Consensus       358 al~~~~~~~~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~  413 (451)
                      +|+.++++++.++           +   ..+++.+..+++.|+++++++..          ...++.+.|+++||++.++
T Consensus       317 al~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  396 (433)
T 1zod_A          317 VLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIV  396 (433)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEE
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEecc
Confidence            9987755444433           2   12356566678899999998731          2567999999999999987


Q ss_pred             CC-C--CEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          414 GK-G--NVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       414 ~~-~--~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +. +  +++||+|++.+|++++++++++|+++++++
T Consensus       397 ~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          397 QLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             CCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence            53 3  789999999999999999999999998764

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=100.00  E-value=1.6e-54  Score=441.41  Aligned_cols=379  Identities=27%  Similarity=0.396  Sum_probs=308.7

Q ss_pred             hHHHHHHHHhcc-cccCCCCceEEEeecccEEEe-cCCCEEEeeccCcccccCCCCCHHHH-H-HHHH---HHhhccccc
Q 013008           62 NKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYD-AEGREYLDLSSGIAVNALGHGDADWI-K-AVVD---QANVLTHVS  134 (451)
Q Consensus        62 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~G~~l~d-~~G~~~iD~~~~~~~~~lG~~~p~v~-~-a~~~---~~~~~~~~~  134 (451)
                      .+.+.+...++. ...| +.++.+++++|+++|| .||++||||++++++++|||+||+|+ + |+.+   ++++..+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~   95 (449)
T 2cjg_A           17 PDRVHEVLGRSMLVDGL-DIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN   95 (449)
T ss_dssp             GGGHHHHHHTTSCCCSC-SSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHhhcccCC-CeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            344554555554 3333 3444456999999999 99999999999999999999999999 9 9999   888765443


Q ss_pred             CCCCCHHHHHHHHHHhhcc---CCCeEEecCCHHHHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEcCCccCChhhhh
Q 013008          135 NMYYSIPQIELAKRLVACS---FADRVFFSNTGTEANEAAIKFARKFQRHS---NPDSKEPATEFVSFTNSFHGRTMGAL  208 (451)
Q Consensus       135 ~~~~~~~~~~l~~~l~~~~---~~e~v~~~~sG~eA~~~al~~a~~~~~~~---~~~~~~~~~~ii~~~~~yhg~~~~~~  208 (451)
                      ..+.++...+++++|++++   +.++|+|++||+||++.|+++++.+++..   .+.+.+++++||+++++|||++..++
T Consensus        96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~  175 (449)
T 2cjg_A           96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL  175 (449)
T ss_dssp             TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred             cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence            4466777899999999987   37899999999999999999998877521   00000137899999999999999888


Q ss_pred             hccCC-CCcCCCCcCCCCCeeEeeCCC--HH-------------HHHHhcC--CCCeEEEEEccccCCCCccccCHHHHH
Q 013008          209 ALTSK-EHYRSPFEPVMPGVNFVEYGN--IE-------------ATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       209 ~~~~~-~~~~~~~~~~~~~~~~~~~~d--~~-------------~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      .+++. +.++..+.|..+++..+|++|  .+             +|+++++  .+++++|++||+++++|.++++++|++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~  255 (449)
T 2cjg_A          176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA  255 (449)
T ss_dssp             GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred             hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence            87765 333445556667788888877  43             3888885  357899999999999998899999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhc-----cCCCccCCC
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI-----NYGDHGSTF  345 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~-----~~~~~~~t~  345 (451)
                      +|+++|++||++||+||||+|||++|.+++++++++.||++||||++    |+|++++++++++.+     ....+.+|+
T Consensus       256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~  331 (449)
T 2cjg_A          256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTW  331 (449)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSS
T ss_pred             HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCC
Confidence            99999999999999999999999999887888889999999999999    899999999999863     334567899


Q ss_pred             CCcHHHHHHHHHHHHHhcChHHHHH-----------HH---hCCCC-cceecccceeEEEEecC--ChHHHHHHHHHCCc
Q 013008          346 AGSPLVCNAAIAVLDKISNPAFLAS-----------KL---ARNPH-VKDVRGLGLIIGIEFDV--SATPVVDACRDSGL  408 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~~~~~~~~~-----------~~---~~~~~-~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv  408 (451)
                      ++|+++++|+.++|+.++++++.++           +.   .+++. +..+++.|+++++++..  ...++++.|+++||
T Consensus       332 ~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv  411 (449)
T 2cjg_A          332 GGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRAV  411 (449)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHHHHHHHHHHHHHTTE
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChHHHHHHHHHHHHCCe
Confidence            9999999999999997755544443           21   24565 66788999999998842  35679999999999


Q ss_pred             eeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          409 LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       409 ~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++.+++. +++|++|++.+|+++|++++++|+++++++
T Consensus       412 ~v~~~g~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          412 IVLPAGA-DTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             ECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999875 899999999999999999999999998764

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=7.7e-53  Score=421.25  Aligned_cols=375  Identities=35%  Similarity=0.609  Sum_probs=323.7

Q ss_pred             HHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHH
Q 013008           65 VMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIE  144 (451)
Q Consensus        65 ~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~  144 (451)
                      +++.+.++..+.|.+.|+++++++|+++||.+|++||||.+++++.++||+||+|.+++.+++++..+.+..+..+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~   82 (392)
T 3ruy_A            3 IIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGP   82 (392)
T ss_dssp             HHHHHHHHBCTTCCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHH
T ss_pred             HHHHHHhhhhccCCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHH
Confidence            44556677778888999999999999999999999999999999999999999999999999988766554455666899


Q ss_pred             HHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhh-hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC
Q 013008          145 LAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV  223 (451)
Q Consensus       145 l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  223 (451)
                      ++++|++.++.++++|++||++|++.++++++.+.. .++.+  +++++||+++++|||.+..+..+++...+...+.+.
T Consensus        83 l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (392)
T 3ruy_A           83 WYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVE--ANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPM  160 (392)
T ss_dssp             HHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC--TTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSC
T ss_pred             HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCC--CCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCC
Confidence            999999999999999999999999999998876521 11110  146799999999999999988887776666667777


Q ss_pred             CCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccc
Q 013008          224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH  303 (451)
Q Consensus       224 ~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~  303 (451)
                      .+++..++++|+++|+++++ .++++|+++|+++++|.+.++++++++|+++|++||++||+||+|++||++|..++.+.
T Consensus       161 ~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~  239 (392)
T 3ruy_A          161 LPGIIVIPYGDLEALKAAIT-PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDW  239 (392)
T ss_dssp             CSSEEEECTTCHHHHHHHCC-TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred             CCCCeeeCcccHHHHHHHhc-cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhc
Confidence            77888889999999999997 57999999999999999888999999999999999999999999999999998888888


Q ss_pred             cCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HH
Q 013008          304 YGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KL  372 (451)
Q Consensus       304 ~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~  372 (451)
                      +++.||+++|||+++|| +|+|++++++++++.+....+..+++.|+++++++.++|+.++.+++.++          .+
T Consensus       240 ~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L  319 (392)
T 3ruy_A          240 DNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQL  319 (392)
T ss_dssp             GTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            89999999999999999 99999999999999998777888999999999999999997754433333          22


Q ss_pred             hCC--CCcceecccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          373 ARN--PHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       373 ~~~--~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.+  +.+..+++.|.++++.+.....++.+.|.++||++.|++. +.+|++|++.++++++++++++|++++
T Consensus       320 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          320 KEIDNPMITEVRGKGLFIGIELNEPARPYCEQLKAAGLLCKETHE-NVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             TTCCCTTEEEEEEETTEEEEEESSCSHHHHHHHHTTTEECCCBTT-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCceEEEeeeeEEEEEEcchHHHHHHHHHHCCcEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            333  4466677889999998855678899999999999998875 899999999999999999999999876

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=2.5e-52  Score=419.18  Aligned_cols=374  Identities=42%  Similarity=0.723  Sum_probs=324.4

Q ss_pred             HhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 013008           70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL  149 (451)
Q Consensus        70 ~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l  149 (451)
                      .++..+.|.+.|+++++++|+++||.+|++||||.++.++.++||+||++.+++.+++++..+.+..+..+...+++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l   90 (406)
T 4adb_A           11 DEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKL   90 (406)
T ss_dssp             HHHBCSSCCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHH
T ss_pred             HHHhhhhcCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHH
Confidence            34566778888999999999999999999999999999999999999999999999998865544556677799999999


Q ss_pred             hhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE
Q 013008          150 VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF  229 (451)
Q Consensus       150 ~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (451)
                      +++++.+++++++||++|++.++++++.+...++.+   ++++||+++|+||++...+...++...+...+.+...++..
T Consensus        91 a~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~---g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
T 4adb_A           91 IDATFADRVFFCNSGAEANEAALKLARKFAHDRYGS---HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRH  167 (406)
T ss_dssp             HHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCT---TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEE
T ss_pred             HhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceE
Confidence            999999999999999999999999888653322221   46899999999999998888888766666566677778889


Q ss_pred             eeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc
Q 013008          230 VEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD  309 (451)
Q Consensus       230 ~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd  309 (451)
                      +|++|+++|+++++ +++++|+++|+++++|+++++.+++++|+++|++||++||+||+|+||+++|..++.+.+++.||
T Consensus       168 ~~~~d~~~l~~~l~-~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d  246 (406)
T 4adb_A          168 AAYNDINSASALID-DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD  246 (406)
T ss_dssp             ECTTCHHHHHTTCS-TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred             eCCCcHHHHHHHhc-CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCC
Confidence            99999999999997 47899999999999998888999999999999999999999999999999998877888899999


Q ss_pred             eeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HH---hCC
Q 013008          310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KL---ARN  375 (451)
Q Consensus       310 i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~---~~~  375 (451)
                      ++||||++++|+|+|++++++++++.+....+..+++.++++++++.++|+.++.+++.++           +.   ..+
T Consensus       247 ~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  326 (406)
T 4adb_A          247 LLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRY  326 (406)
T ss_dssp             EEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999998899999999999999998777888999999999999999998766555444           11   112


Q ss_pred             CCcceecccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          376 PHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       376 ~~~~~v~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +....+++.|.++++.+..    ...++++.|+++||++.+++. +.+|+++++.++++++++++++|++++++++.
T Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~  402 (406)
T 4adb_A          327 GLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGG-NVVRFAPALNVSEEEVTTGLDRFAAACEHFVS  402 (406)
T ss_dssp             CCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCC-CeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3455577889999999853    578899999999999999875 88999999999999999999999999988764

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=100.00  E-value=9.8e-54  Score=437.96  Aligned_cols=377  Identities=26%  Similarity=0.368  Sum_probs=289.2

Q ss_pred             chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhc--ccccCCC-
Q 013008           61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNMY-  137 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~~~-  137 (451)
                      ..+++.++..++......+.|+.+++++|+++||.||++||||++|+++.+|||+||+|++|+.+++...  .+.+..+ 
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~  105 (472)
T 1ohv_A           26 RSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI  105 (472)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT
T ss_pred             cHHHHHHHHHhhhccccccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc
Confidence            3455555555544333344677889999999999999999999999999999999999999999987543  2221111 


Q ss_pred             --CCHHHHHHHHHHhhcc--CCCeEEecCCHHHHHHHHHHHHHHHhhh--cC----------------CCCCCCCceEEE
Q 013008          138 --YSIPQIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRH--SN----------------PDSKEPATEFVS  195 (451)
Q Consensus       138 --~~~~~~~l~~~l~~~~--~~e~v~~~~sG~eA~~~al~~a~~~~~~--~~----------------~~~~~~~~~ii~  195 (451)
                        ..+...+++++|+++.  +.++|+|++||+|||+.|+++++.|+..  ++                .++ .++++||+
T Consensus       106 ~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g-~~r~~ii~  184 (472)
T 1ohv_A          106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPG-CPDYSILS  184 (472)
T ss_dssp             SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTT-SCCCEEEE
T ss_pred             ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCccccccccccccccccccc-CCCCeEEE
Confidence              2344666666677776  4789999999999999999999877521  11                010 01589999


Q ss_pred             EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE-------------eeCC------CHHHHHHhcCC-----CCeEEEE
Q 013008          196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF-------------VEYG------NIEATRKLIQP-----GKTAAVF  251 (451)
Q Consensus       196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~------d~~~le~~l~~-----~~~aavi  251 (451)
                      ++++|||++.+++.+++...++....+. .++.+             .++|      |+++|+++|++     .++++|+
T Consensus       185 ~~~~yHg~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vi  263 (472)
T 1ohv_A          185 FMGAFHGRTMGCLATTHSKAIHKIDIPS-FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII  263 (472)
T ss_dssp             ETTCCCCSSHHHHHHCCSCHHHHTTSCC-CCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ECCCcccccHHHHhcCCCccccccCCCC-CCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            9999999999998887643221101111 01000             1122      68899999863     1799999


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCC--cceeeeccc-ccCCcccccccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKP-LAGGLPIGAALV  328 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~--pdi~t~sK~-lg~G~~iG~v~~  328 (451)
                      +||+++++|.++++++||++|+++|++||++||+||||+|||++|.+++++++++.  ||++||||+ ++||++    + 
T Consensus       264 ve~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~~----~-  338 (472)
T 1ohv_A          264 VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF----H-  338 (472)
T ss_dssp             ECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEE----E-
T ss_pred             EcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCcc----C-
Confidence            99999999999999999999999999999999999999999999988888889987  999999999 776544    3 


Q ss_pred             cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------H---HhCCC-CcceecccceeEEEEec
Q 013008          329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------K---LARNP-HVKDVRGLGLIIGIEFD  393 (451)
Q Consensus       329 ~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~---~~~~~-~~~~v~g~G~~~~~~~~  393 (451)
                      ++++. .+....+.+|+++||++|++++++|+.++++++.++           +   ..++| .+..+++.|+++++++.
T Consensus       339 ~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~  417 (472)
T 1ohv_A          339 KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP  417 (472)
T ss_dssp             CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS
T ss_pred             chhhc-ccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeC
Confidence            55552 344456788999999999999999998765544443           1   12456 36668899999999874


Q ss_pred             C--ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          394 V--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       394 ~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .  ....+++.|+++||++.|++. +.+||+|++.+|+++|++++++|+++++++
T Consensus       418 ~~~~~~~~~~~l~~~Gv~~~~~g~-~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          418 DESIRNKLISIARNKGVMLGGCGD-KSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             SHHHHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             ChhHHHHHHHHHHHCCeEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            2  356799999999999998765 789999999999999999999999998764

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=100.00  E-value=8.7e-53  Score=428.70  Aligned_cols=362  Identities=27%  Similarity=0.464  Sum_probs=300.9

Q ss_pred             CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--CC
Q 013008           80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--AD  156 (451)
Q Consensus        80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~e  156 (451)
                      .|+++++++|+++||.+|++||||.++++++++||+||+|++|+.+++++...... .+..+...+++++|+++++  .+
T Consensus        32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~  111 (449)
T 3a8u_X           32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN  111 (449)
T ss_dssp             SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred             CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence            48899999999999999999999999999999999999999999999987541112 4566778999999999984  78


Q ss_pred             eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC---
Q 013008          157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG---  233 (451)
Q Consensus       157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  233 (451)
                      +|+|++||++|++.|+++++.++..++.+   ++++||+++++|||++..++..++.+.++..+.+..+++..++.+   
T Consensus       112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~  188 (449)
T 3a8u_X          112 HVFFTDSGSECALTAVKMVRAYWRLKGQA---TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLA  188 (449)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCG
T ss_pred             EEEEcCcHHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccc
Confidence            99999999999999999998877544332   478999999999999887777766444344444444555444321   


Q ss_pred             -------C--------HHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008          234 -------N--------IEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT  295 (451)
Q Consensus       234 -------d--------~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~  295 (451)
                             |        +++|+++++.   +++++|++||+++++|.++++++++++|+++|++||++||+||||+|||++
T Consensus       189 ~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~  268 (449)
T 3a8u_X          189 SNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT  268 (449)
T ss_dssp             GGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred             cCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Confidence                   5        8999999862   478999999999999988999999999999999999999999999999999


Q ss_pred             cccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC---------CccCCCCCcHHHHHHHHHHHHHhcCh
Q 013008          296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG---------DHGSTFAGSPLVCNAAIAVLDKISNP  365 (451)
Q Consensus       296 G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~---------~~~~t~~~~~~~~aaa~aal~~~~~~  365 (451)
                      |..+.++.+++.||++++||++++| +|+|++++++++++.+...         .+.+|+++|+++++++.++|+.++++
T Consensus       269 g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~  348 (449)
T 3a8u_X          269 GSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE  348 (449)
T ss_dssp             SSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred             CcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc
Confidence            9877778889999999999999988 9999999999999888653         35678999999999999999987654


Q ss_pred             HHHHH-----------HHh--CCCCcceecccceeEEEEecCC-------hHHHHHHHHHCCceeeecCCCCEEEEeCCC
Q 013008          366 AFLAS-----------KLA--RNPHVKDVRGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAGKGNVVRLVPPL  425 (451)
Q Consensus       366 ~~~~~-----------~~~--~~~~~~~v~g~G~~~~~~~~~~-------~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~  425 (451)
                      ++.++           +.+  +++.+..+++.|.++++++...       ..++.+.|+++||++.+++  +.+|++|++
T Consensus       349 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRis~~~  426 (449)
T 3a8u_X          349 NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG--DTLQFGPTF  426 (449)
T ss_dssp             THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET--TEEEECCCT
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC--CEEEEECCC
Confidence            44443           222  2455555788899999998421       1268999999999999875  789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q 013008          426 IISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .+|++++++++++|+++++++
T Consensus       427 ~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          427 NSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998764

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=100.00  E-value=5.6e-53  Score=430.64  Aligned_cols=378  Identities=22%  Similarity=0.273  Sum_probs=290.4

Q ss_pred             hhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHH
Q 013008           39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD  118 (451)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~  118 (451)
                      ...|.++ ++++.+++|+|+++..+.            |.++|+++++++|+++||.+|++||||.++.++.++||+||+
T Consensus        11 ~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~   77 (453)
T 2cy8_A           11 TEGSVFW-AQRARSVMPDGVTADTRA------------FDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPR   77 (453)
T ss_dssp             CHHHHHH-HHHHHHHSCCC------C------------CSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHH
T ss_pred             CchhHHH-HHHHHhhcCCCCCccccc------------cCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHH
Confidence            3456677 888999999987665442            235799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 013008          119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT  197 (451)
Q Consensus       119 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~  197 (451)
                      |++|+.+++++..+  ..+..+.+.++++++++.+ +.++|+|++||+||++.|+++++.+++         +++||+++
T Consensus        78 v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~---------~~~vi~~~  146 (453)
T 2cy8_A           78 VNAAIAEALSHGVQ--YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTG---------RRMILRFE  146 (453)
T ss_dssp             HHHHHHHHHTTTCS--SCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHC---------CCEEEEEC
T ss_pred             HHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEEc
Confidence            99999999987432  2456777999999999888 588999999999999999999887763         67899999


Q ss_pred             CCccCChhhhhhccCC----CCcCCCCc-CCCCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHH
Q 013008          198 NSFHGRTMGALALTSK----EHYRSPFE-PVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       198 ~~yhg~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      |+|||++...+..++.    +.. .+.. ...+++..++++|+++|+++++.  +++++|++||+++++|.++++++|++
T Consensus       147 ~~yhg~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~  225 (453)
T 2cy8_A          147 GHYHGWHDFSASGYNSHFDGQPA-PGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLR  225 (453)
T ss_dssp             C-----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHH
T ss_pred             CCcCCCchhhHhhcCCccCCCcC-CCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHH
Confidence            9999998776654432    110 0110 11134567788999999999973  47899999999988888889999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---C--CccCCC
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---G--DHGSTF  345 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~--~~~~t~  345 (451)
                      +|+++|++||++||+||+|+|| ++|..++++++++.||++++||++++|+|+|++++++++++.+..   .  .+.+||
T Consensus       226 ~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~  304 (453)
T 2cy8_A          226 EGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTF  304 (453)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------C
T ss_pred             HHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCC
Confidence            9999999999999999999999 888877788889999999999999999999999999999998875   1  356789


Q ss_pred             CCcHHHHHHHHHHHHH-hcChHHHHH-----------H---HhCCCCcceecccceeEEEEecC-----C----------
Q 013008          346 AGSPLVCNAAIAVLDK-ISNPAFLAS-----------K---LARNPHVKDVRGLGLIIGIEFDV-----S----------  395 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~-~~~~~~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~~-----~----------  395 (451)
                      ++||++++++.++|+. + .+++.++           +   ..+++....+++.|.++++++..     .          
T Consensus       305 ~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~  383 (453)
T 2cy8_A          305 TGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVA  383 (453)
T ss_dssp             CCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSC
T ss_pred             CCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccc
Confidence            9999999999999997 6 3433333           1   12245445578899999999853     1          


Q ss_pred             ------hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          396 ------ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       396 ------~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                            ..++++.|+++||++.|.   .  ++++++.++++++++++++|++++++++.
T Consensus       384 ~~~~~~~~~l~~~l~~~Gv~v~~~---~--~~~l~~~~t~~~i~~~l~~l~~~l~~~~~  437 (453)
T 2cy8_A          384 RPDVKMIAAMRMALILEGVDIGGR---G--SVFLSAQHEREHVEHLVTTFDRVLDRLAD  437 (453)
T ss_dssp             CCCHHHHHHHHHHHHHTTEECBTT---T--EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCCeEEeCC---C--CEEeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence                  457889999999999653   2  34568999999999999999999987753

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.2e-52  Score=420.86  Aligned_cols=369  Identities=41%  Similarity=0.689  Sum_probs=301.2

Q ss_pred             hHHHHHHHHhc-ccccCCC--CceEEEeecccEEEecCCCEEEeeccCcccccCCCC-CHHHHHHHHHHHhhcccc-cCC
Q 013008           62 NKEVMEAEKKL-LVGTYNR--APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHV-SNM  136 (451)
Q Consensus        62 ~~~~~~~~~~~-~~~~~~~--~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~-~~~  136 (451)
                      .++++++..++ ..+.|.+  .|+++.+++|+++||.+|++||||.++.+++++||+ ||+|++|+.+++++..+. ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~   82 (419)
T 2eo5_A            3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND   82 (419)
T ss_dssp             HHHHHHHHHHHSCCCCCSSCCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSC
T ss_pred             hHHHHHHHHhhhccccccccCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccc
Confidence            45566666666 6677776  799999999999999999999999999999999999 999999999999875432 234


Q ss_pred             CCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          137 YYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       137 ~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +.++...+++++|+++++   .++|+|++||+||++.|+++++.+          .+++||+++|+|||++..+..+++.
T Consensus        83 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~----------~~~~vi~~~p~yh~~~~~~~~~~~~  152 (419)
T 2eo5_A           83 FYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT----------GRKYIIAFLGGFHGRTFGSISLTAS  152 (419)
T ss_dssp             SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT----------SCCEEEEETTCCCCSSHHHHHHCCS
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh----------hCCcEEEECCCcCCCCHhhHhhcCC
Confidence            566778999999999987   469999999999999999988754          2678999999999999888877665


Q ss_pred             C-CcCCCCcCCCCCeeEeeCC---------------------CHHHHH-HhcCC----CCeEEEEEccccCCCCccccCH
Q 013008          214 E-HYRSPFEPVMPGVNFVEYG---------------------NIEATR-KLIQP----GKTAAVFVEPIQGEGGIYSATK  266 (451)
Q Consensus       214 ~-~~~~~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~----~~~aavi~ep~~~~~G~~~~~~  266 (451)
                      . .++..+.+...++..+|++                     |+++|+ ++++.    +++++|++||+++++|.+++++
T Consensus       153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~  232 (419)
T 2eo5_A          153 KAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPK  232 (419)
T ss_dssp             CGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCT
T ss_pred             ccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCH
Confidence            3 3333444444566666654                     367888 88762    4789999999999889888999


Q ss_pred             HHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCC
Q 013008          267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTF  345 (451)
Q Consensus       267 ~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~  345 (451)
                      +++++|+++|++||++||+||+|++||++|..++.+.+++.||++||||++++| +|+|+++++++++ .+ ...+.+|+
T Consensus       233 ~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~  310 (419)
T 2eo5_A          233 NFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTF  310 (419)
T ss_dssp             THHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CC
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCC
Confidence            999999999999999999999999999999877778889999999999999999 9999999999988 77 44677899


Q ss_pred             CCcHHHHHHHHHHHHHhcChHHHHH-------HHhCCCC-cceecccceeEEEEec---CChHHHHHHHHHCCceeeecC
Q 013008          346 AGSPLVCNAAIAVLDKISNPAFLAS-------KLARNPH-VKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAG  414 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~~~~~~~~~-------~~~~~~~-~~~v~g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~  414 (451)
                      ++|+++++|+.++|+.+++  +.++       +.+.+.. +..+++.|.++++++.   .... +++.|+++||++.+++
T Consensus       311 ~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~  387 (419)
T 2eo5_A          311 GGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGLADDVRGIGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG  387 (419)
T ss_dssp             CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTSSSEEEEETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET
T ss_pred             CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhheEeeeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC
Confidence            9999999999999987543  3332       2222221 4567888999999883   2245 8889999999999986


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          415 KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       415 ~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      . +.+||+|++.+|++++++++++|+++++++
T Consensus       388 ~-~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          388 R-SAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             C-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            4 789999999999999999999999998764

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=100.00  E-value=1.2e-50  Score=410.47  Aligned_cols=372  Identities=32%  Similarity=0.527  Sum_probs=300.2

Q ss_pred             HhcccccCC----CCceE-EEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHH
Q 013008           70 KKLLVGTYN----RAPVV-LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQI  143 (451)
Q Consensus        70 ~~~~~~~~~----~~p~~-~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~  143 (451)
                      .++.++.+.    +.|++ +.+++|+++||.+|++|||+.++.+++++||+||+|++|+.+++++..+.+ ..+.++...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~   89 (429)
T 1s0a_A           10 QRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAI   89 (429)
T ss_dssp             HHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHH
T ss_pred             HHhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHH
Confidence            344454433    34665 899999999999999999999999999999999999999999998754322 234566688


Q ss_pred             HHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC-cCCCC
Q 013008          144 ELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPF  220 (451)
Q Consensus       144 ~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~-~~~~~  220 (451)
                      +++++++++++  .++|+|++||+||++.++++++.+++.++.    ++++||+++|+||++...++.+++... ++..+
T Consensus        90 ~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~----~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~  165 (429)
T 1s0a_A           90 ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE----ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLW  165 (429)
T ss_dssp             HHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC----CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGG
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCC----CCCeEEEECCCCCCCchhhhhhcCCchhhcccc
Confidence            99999999984  889999999999999999988876642221    378999999999999887776654321 12222


Q ss_pred             cCCCCCeeEee-----------CCCHHHHHHhcCC--CCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEe
Q 013008          221 EPVMPGVNFVE-----------YGNIEATRKLIQP--GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFD  286 (451)
Q Consensus       221 ~~~~~~~~~~~-----------~~d~~~le~~l~~--~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D  286 (451)
                      .+..+++..++           ..|+++|+++++.  +++++|++||+ ++++|.++++++++++|+++|++||++||+|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~D  245 (429)
T 1s0a_A          166 KGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD  245 (429)
T ss_dssp             TTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            22223333332           2478999998862  57899999999 8889988999999999999999999999999


Q ss_pred             ccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC-----CccCCCCCcHHHHHHHHHHHH
Q 013008          287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNAAIAVLD  360 (451)
Q Consensus       287 Ev~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~aaa~aal~  360 (451)
                      |+|+|||++|..++++.+++.||+++|||++++| +|+|++++++++++.+...     .+.+|+++|+++++++.++|+
T Consensus       246 e~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~  325 (429)
T 1s0a_A          246 EIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA  325 (429)
T ss_dssp             CTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred             ehhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence            9999999998877777888999999999999999 9999999999999888653     256799999999999999999


Q ss_pred             HhcChHHHHH----------HHhC---CCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCCCCEEEEeCCC
Q 013008          361 KISNPAFLAS----------KLAR---NPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPL  425 (451)
Q Consensus       361 ~~~~~~~~~~----------~~~~---~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~  425 (451)
                      .++++++.++          .++.   +|.+..+++.|.++++++.  .+..++.+.|+++||++.+.+  +.+|++|++
T Consensus       326 ~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~--~~iRis~~~  403 (429)
T 1s0a_A          326 ILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFG--KLIYLMPPY  403 (429)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCBT--TEEEECCCT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCcccHHHHHHHHHHCCCEEeccC--CEEEEECCC
Confidence            8766555444          1222   3555557788999999885  357789999999999998863  789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHh
Q 013008          426 IISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       426 ~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+|+|++++++++|++++++++
T Consensus       404 ~~t~e~i~~~~~~l~~~~~~~~  425 (429)
T 1s0a_A          404 IILPQQLQRLTAAVNRAVQDET  425 (429)
T ss_dssp             TCCHHHHHHHHHHHHHHTSSGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999886654

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=1e-49  Score=402.86  Aligned_cols=376  Identities=35%  Similarity=0.592  Sum_probs=306.5

Q ss_pred             HHHHHHHHhcccccCCC-CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCH
Q 013008           63 KEVMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSI  140 (451)
Q Consensus        63 ~~~~~~~~~~~~~~~~~-~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~  140 (451)
                      +++.++..++..+.+.. .|+++.+++|+++||.+|++||||.++.++.++||+||+|.+++.+++++..+.+ ..++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~   84 (426)
T 1sff_A            5 KELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYE   84 (426)
T ss_dssp             HHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECH
T ss_pred             HHHHHHHHHhcCccccccCCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCH
Confidence            44555556666665554 5889999999999999999999999999988999999999999999998754432 334567


Q ss_pred             HHHHHHHHHhhcc-C-C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-Cc
Q 013008          141 PQIELAKRLVACS-F-A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HY  216 (451)
Q Consensus       141 ~~~~l~~~l~~~~-~-~-e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~  216 (451)
                      ...+|+++|++++ + . ++|++++||++|++.++++++.+++         +++||+++|+||++...++.+++.. .+
T Consensus        85 ~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~---------~~~vi~~~p~y~~~~~~~~~~~g~~~~~  155 (426)
T 1sff_A           85 PYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK---------RSGTIAFSGAYHGRTHYTLALTGKVNPY  155 (426)
T ss_dssp             HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHHSSCCTTT
T ss_pred             HHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCCchHhhhhcCCcccc
Confidence            7899999999998 5 4 8999999999999999998776653         3489999999999987776665432 22


Q ss_pred             CCCCcCCCCCeeEeeCC----------CHHHHHHhcCC----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCE
Q 013008          217 RSPFEPVMPGVNFVEYG----------NIEATRKLIQP----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL  282 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~~----------d~~~le~~l~~----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l  282 (451)
                      +..+.+...++..++.+          |+++|+++++.    .++++|+++|+++++|.++++++++++|+++|++||++
T Consensus       156 ~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~  235 (426)
T 1sff_A          156 SAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIM  235 (426)
T ss_dssp             TTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCE
T ss_pred             ccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence            33344444456555542          68899988862    47899999999888887899999999999999999999


Q ss_pred             EEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008          283 LVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       283 lI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      ||+||+|+||++.|..++++.+++.||+++|||++++|+|+|++++++++++.+....+..|++.|+++++++.++|+.+
T Consensus       236 li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~  315 (426)
T 1sff_A          236 LIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVF  315 (426)
T ss_dssp             EEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH
T ss_pred             EEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHH
Confidence            99999999999988877777888899999999999999999999999999998876567788999999999999999877


Q ss_pred             cChHHHHH-----------H---HhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCceeeecCC-CC
Q 013008          363 SNPAFLAS-----------K---LARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGK-GN  417 (451)
Q Consensus       363 ~~~~~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~~-~~  417 (451)
                      +++++.++           +   ...++.+..+++.|.++++++..          ...++++.|+++||++.|+.. .+
T Consensus       316 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~  395 (426)
T 1sff_A          316 EQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYN  395 (426)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSC
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCC
Confidence            54444333           1   12355555567789999999831          246788999999999998763 47


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          418 VVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       418 ~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+|+++++.++++++++++++|++++++++
T Consensus       396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  425 (426)
T 1sff_A          396 VLRILVPLTIEDAQIRQGLEIISQCFDEAK  425 (426)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999998765

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=100.00  E-value=2.6e-48  Score=389.15  Aligned_cols=363  Identities=49%  Similarity=0.854  Sum_probs=300.3

Q ss_pred             cCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC
Q 013008           76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA  155 (451)
Q Consensus        76 ~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  155 (451)
                      .+...|+.+.+++|+++||.+|++||||.++.++.++||++|++.+++.+++++..+.+..+..+...+++++|+++++.
T Consensus        18 ~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~   97 (397)
T 2ord_A           18 TYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFG   97 (397)
T ss_dssp             CCCCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTS
T ss_pred             cccCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCC
Confidence            45567999999999999999999999999998888999999999999999998765443334456789999999999999


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCH
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI  235 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  235 (451)
                      +++++++||++|++.++++++.+.....    +++++||+++++||+....++...+...+..++.|...++..++++|+
T Consensus        98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~----~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~  173 (397)
T 2ord_A           98 GKVFFANTGTEANEAAIKIARKYGKKKS----EKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV  173 (397)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHHHHC----TTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH
T ss_pred             CeEEEeCCHHHHHHHHHHHHHHHhhcCC----CCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH
Confidence            9999999999999999998875421100    035789999999999987666655543223334455667888888999


Q ss_pred             HHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecc
Q 013008          236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK  315 (451)
Q Consensus       236 ~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK  315 (451)
                      ++|++++++ ++++|+++|+++++|.++++.+++++|+++|++||++||+||+|+||++.|..+....+++.||+++|||
T Consensus       174 ~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK  252 (397)
T 2ord_A          174 EDLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAK  252 (397)
T ss_dssp             HHHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECG
T ss_pred             HHHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeecc
Confidence            999999974 7899999999999888688999999999999999999999999999988887666667788899999999


Q ss_pred             cccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHh---CCCCccee
Q 013008          316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLA---RNPHVKDV  381 (451)
Q Consensus       316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~---~~~~~~~v  381 (451)
                      ++++|+|+|+++++++++ .+....+..+++.|+++++++.++|+.+.++++.++           +.+   +++.+..+
T Consensus       253 ~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  331 (397)
T 2ord_A          253 GLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADV  331 (397)
T ss_dssp             GGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             ccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence            999999999999998887 776555678899999999999999998765443333           211   24544446


Q ss_pred             cccceeEEEEecC--ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          382 RGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       382 ~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ++.|.++++.+..  ...++.+.|+++||++.+++. +.+|+++++.++++++++++++|++++++
T Consensus       332 ~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~iRis~~~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          332 RGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGN-NTIRFLPPLTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             EEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EEEeEEEEEEECChHHHHHHHHHHHHCCCEEccCCC-CEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence            7788999998843  478899999999999999865 78999999999999999999999998864

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=100.00  E-value=1.2e-47  Score=383.93  Aligned_cols=368  Identities=40%  Similarity=0.716  Sum_probs=301.8

Q ss_pred             HHHHHHhccc---ccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 013008           65 VMEAEKKLLV---GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP  141 (451)
Q Consensus        65 ~~~~~~~~~~---~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~  141 (451)
                      +.+.+.+|.+   ..|.+.|+++.+++|+++||.+|++||||.++.+++++||.+|++.+++.+++++..+.+..+..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~   88 (395)
T 1vef_A            9 WRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM   88 (395)
T ss_dssp             CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHH
T ss_pred             HHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHH
Confidence            3344444443   6677889999999999999999999999999988889999999999999999987654333345677


Q ss_pred             HHHHHHHHhhcc--CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~--~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..++++++++++  +.+++++++||++|++.++++++.++         ++++||+++++||+....++...+.......
T Consensus        89 ~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~---------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~  159 (395)
T 1vef_A           89 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT---------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREP  159 (395)
T ss_dssp             HHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH---------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGG
T ss_pred             HHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh---------CCCeEEEEcCCcCCCchhhhhhcCCcccccc
Confidence            899999999999  57899999999999999999876444         4788999999999988766665543322222


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                      +.|...++..++++|+++|++++++ ++++|+++|+++++|.+.++++++++|+++|++||++||+||+|+||++.|..+
T Consensus       160 ~~p~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~  238 (395)
T 1vef_A          160 FLPLVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF  238 (395)
T ss_dssp             GCSCSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred             cCCCCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh
Confidence            3355556777788899999999974 689999999998889888899999999999999999999999999998888766


Q ss_pred             cccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------
Q 013008          300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------  370 (451)
Q Consensus       300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------  370 (451)
                      ..+..++.+|+++|||++++|+|+|++++++++++.+....+..+++.|+++++++.++|+.+.++++.++         
T Consensus       239 ~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~  318 (395)
T 1vef_A          239 AFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFM  318 (395)
T ss_dssp             THHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            66777888999999999999999999999999998887655677889999999999999987653322222         


Q ss_pred             -HHhCCC--CcceecccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          371 -KLARNP--HVKDVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       371 -~~~~~~--~~~~v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                       .++.++  .+..+++.|.++++.+.....++.+.|+ ++||.+.+++. +.+|+++++.++++++++++++|++++
T Consensus       319 ~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          319 EKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGP-TVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             HHHHTSCCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCceEEEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCC-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence             223332  2334567788999988545778999999 99999998765 789999999999999999999999876

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=2.6e-46  Score=371.36  Aligned_cols=361  Identities=43%  Similarity=0.764  Sum_probs=297.2

Q ss_pred             cccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc
Q 013008           74 VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS  153 (451)
Q Consensus        74 ~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  153 (451)
                      .+.+.+.|+.+.+++|.++||.+|+.||||.++.+++.+||.+|++.+++.+++++..+....++.....+++++|++++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~   83 (375)
T 2eh6_A            4 MNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHF   83 (375)
T ss_dssp             CSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTS
T ss_pred             cccCcCCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhc
Confidence            44566789999999999999999999999999998888999999999999999987543333345666889999999999


Q ss_pred             CC-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          154 FA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       154 ~~-e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                      +. +++++++||++|++.++++++.++.. +.   +++++||+.+|+||++...+...++...+...+.+..+++..+++
T Consensus        84 g~~~~v~~~~g~t~a~~~~~~~~~~~~~~-~~---~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (375)
T 2eh6_A           84 WTEGKVFFANSGTESVEAAIKLARKYWRD-KG---KNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL  159 (375)
T ss_dssp             SSCEEEEEESSHHHHHHHHHHHHHHHHHH-TT---CCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT
T ss_pred             CCCCeEEEeCchHHHHHHHHHHHHHHhcc-CC---CCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC
Confidence            86 99999999999999999987655410 00   124899999999999988776666554333344455567788888


Q ss_pred             CCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee
Q 013008          233 GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT  312 (451)
Q Consensus       233 ~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t  312 (451)
                      +|+++|++++++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|++||+.+..+..+.++..+|+++
T Consensus       160 ~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s  238 (375)
T 2eh6_A          160 NDIDSVYKLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA  238 (375)
T ss_dssp             TCHHHHHTTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred             chHHHHHHHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEE
Confidence            899999999974 7899999999999898888999999999999999999999999999988876555667788899999


Q ss_pred             ecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec
Q 013008          313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR  382 (451)
Q Consensus       313 ~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~  382 (451)
                      |||.+++|+|+|++++++++++.+....+..+++.+++.++++.++|+.+.  ++.++          .+++++. ..++
T Consensus       239 ~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~-~~~~  315 (375)
T 2eh6_A          239 LAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKELGK-GKVK  315 (375)
T ss_dssp             ECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTS-SEEE
T ss_pred             EcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc-CCce
Confidence            999999899999999999999988765567788899999999999998764  22222          2233432 3456


Q ss_pred             ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       383 g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.|.++++++..+..++++.|+++||.+.+++. +.+|+++++.++++++++++++|++++
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l  375 (375)
T 2eh6_A          316 GRGLMLGLELERECKDYVLKALEKGLLINCTAG-KVLRFLPPLIIQKEHIDRAISVLREIL  375 (375)
T ss_dssp             EETTEEEEECSSCCHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEcCcHHHHHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            778999998865577899999999999998765 789999999999999999999998753

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=1.6e-39  Score=327.97  Aligned_cols=343  Identities=11%  Similarity=0.092  Sum_probs=258.4

Q ss_pred             cCCCCceEEEeecccEEEecC--CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc
Q 013008           76 TYNRAPVVLASGKGCKLYDAE--GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS  153 (451)
Q Consensus        76 ~~~~~p~~~~~~~G~~l~d~~--G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  153 (451)
                      .|...+++..+++|+++||.+  |++||||..+..  .+ +.+|+|++|+.+++++..+.+.....+...++++++.+.+
T Consensus        37 ~y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~  113 (421)
T 3l8a_A           37 RYDFTTRPDRLNQFTYKWKTSENNPELLQMWVADM--DF-LPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEH  113 (421)
T ss_dssp             -CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSSCC--CS-CCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHH
T ss_pred             hccCCcccccCCCCCccccccCCCCCeeecccCCC--CC-CCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHh
Confidence            456667888999999999999  899999987743  34 5899999999999987544433334455778888888776


Q ss_pred             C----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCe
Q 013008          154 F----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGV  227 (451)
Q Consensus       154 ~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~  227 (451)
                      +    .++|+|++||++|++.+++++.           .++++||+++|+||++.......+.... .   .+..  .+.
T Consensus       114 g~~~~~~~v~~~~g~~ea~~~a~~~~~-----------~~gd~Vi~~~~~y~~~~~~~~~~g~~~~-~---~~~~~~~~~  178 (421)
T 3l8a_A          114 DYAVVKEDILFIDGVVPAISIALQAFS-----------EKGDAVLINSPVYYPFARTIRLNDHRLV-E---NSLQIINGR  178 (421)
T ss_dssp             CCCCCGGGEEEESCHHHHHHHHHHHHS-----------CTEEEEEEEESCCHHHHHHHHHTTEEEE-E---EECEEETTE
T ss_pred             CCCCCHHHEEEcCCHHHHHHHHHHHhc-----------CCCCEEEECCCCcHHHHHHHHHCCCEEE-e---ccccccCCC
Confidence            5    6789999999999999999764           1578999999999998765544322111 1   1110  110


Q ss_pred             eEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cc-----
Q 013008          228 NFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-----  301 (451)
Q Consensus       228 ~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-----  301 (451)
                      ..   .|+++|+++++..++++|+++++++++| .+++++++++|+++|++||++||+||+|++|+++|..+ .+     
T Consensus       179 ~~---~d~~~le~~i~~~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  254 (421)
T 3l8a_A          179 FE---IDFEQLEKDIIDNNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDA  254 (421)
T ss_dssp             EE---CCHHHHHHHHHHTTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCT
T ss_pred             ee---eCHHHHHHHhhccCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCc
Confidence            00   2899999999744788999998888888 57889999999999999999999999999998887521 11     


Q ss_pred             cccCCCcceeeeccccc-CCccccccccc-HHHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------
Q 013008          302 EHYGIFPDIMTLAKPLA-GGLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------  370 (451)
Q Consensus       302 ~~~~~~pdi~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------  370 (451)
                      +..+..+++.++||+++ +|+|+|+++++ +++++.+.... ...++++|+++++++.++++.  .++++++        
T Consensus       255 ~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~--~~~~~~~~~~~~~~~  332 (421)
T 3l8a_A          255 SYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQY--GKPWLEELKTVIEGN  332 (421)
T ss_dssp             TGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHH
T ss_pred             hhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            22355677889999998 78999999998 89998886543 334568899999999999984  2333322        


Q ss_pred             ------HHhCCCCcceecccceeEE-EEec---CChHHHHHHHHH-CCceeeecC-----CCCEEEEeCCCCCCHHHHHH
Q 013008          371 ------KLARNPHVKDVRGLGLIIG-IEFD---VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQ  434 (451)
Q Consensus       371 ------~~~~~~~~~~v~g~G~~~~-~~~~---~~~~~~~~~l~~-~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~  434 (451)
                            .++++|.+..+++.|.++. +++.   .+..++.+.|++ +||++.++.     ..+++||+++  +++++|++
T Consensus       333 ~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~  410 (421)
T 3l8a_A          333 IKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQE  410 (421)
T ss_dssp             HHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHH
T ss_pred             HHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHH
Confidence                  2233366666777776655 7774   256789999985 599998752     1378999877  69999999


Q ss_pred             HHHHHHHHHH
Q 013008          435 AVEILCKTLP  444 (451)
Q Consensus       435 ~l~~l~~~l~  444 (451)
                      ++++|+++++
T Consensus       411 ~l~~l~~~l~  420 (421)
T 3l8a_A          411 ALSRIISVFG  420 (421)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=9.7e-37  Score=308.30  Aligned_cols=352  Identities=15%  Similarity=0.072  Sum_probs=262.2

Q ss_pred             chHHHHHHHHhccccc-CCCCceEEE-eecccEEEecCCCEEEeeccCcccccCC-CCCHHHHHHHHHHHhhcccccC--
Q 013008           61 NNKEVMEAEKKLLVGT-YNRAPVVLA-SGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSN--  135 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~-~~~~p~~~~-~~~G~~l~d~~G~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~--  135 (451)
                      ..+.+.++..+....+ ..+.+..+. +++|+++|| ||++||||.+|.+   +| +.||++.+++.++++++...+.  
T Consensus        26 ~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~g~~~~~-~g~~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~  101 (427)
T 2w8t_A           26 KFDGLIAERQKLLDSGVTDPFAIVMEQVKSPTEAVI-RGKDTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGS  101 (427)
T ss_dssp             GGHHHHHHHHHHHHTTCCCTTCCCCSEEEETTEEEE-TTEEEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSC
T ss_pred             HHHHHHHHHHHHHHcCCcceeeeeccccCCCceEee-CCceEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCccc
Confidence            3344444444333333 334455677 999999999 9999999999853   88 6899999999999987442211  


Q ss_pred             ---CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          136 ---MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       136 ---~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                         .+..+...+|+++|+++++.+.+++++||++|+..+++++.   +        +++.|++..+. |+.....+...+
T Consensus       102 ~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~---~--------~gd~vl~~~~~-h~~~~~~~~~~g  169 (427)
T 2w8t_A          102 RMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLA---G--------KGEYVILDADS-HASIYDGCQQGN  169 (427)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS---C--------TTCEEEEETTC-CHHHHHHHHHSC
T ss_pred             ccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhc---C--------CCCEEEECCcc-cHHHHHHHHHcC
Confidence               12356689999999999998889999999999999988653   2        46777776665 455544444332


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC---CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ  289 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~  289 (451)
                                  ..+..++++|+++|+++++..   ++++|+++++++++|.+.+    +++|+++|++||++||+||+|
T Consensus       170 ------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~  233 (427)
T 2w8t_A          170 ------------AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAH  233 (427)
T ss_dssp             ------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTT
T ss_pred             ------------CeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCc
Confidence                        234456778999999999642   6899999999999998776    999999999999999999999


Q ss_pred             cCC--CcccccccccccCCCcc----eeeecccccCCcccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHH
Q 013008          290 CGL--GRTGYLWAHEHYGIFPD----IMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDK  361 (451)
Q Consensus       290 tg~--gr~G~~~~~~~~~~~pd----i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~  361 (451)
                      +++  +++|.+ ..+.+++.+|    +.++||++|  ++.|++++++++++.+....  ...+++.+++.++++.++|+.
T Consensus       234 ~~~~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~  310 (427)
T 2w8t_A          234 SMGFFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRK  310 (427)
T ss_dssp             TTTTSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHH
T ss_pred             cccccCCCCCc-hHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHH
Confidence            874  333443 3455677666    678999996  46699999999999886542  234667899999999999998


Q ss_pred             hcC-hHHHHH----------HHhCCCCccee-cc-cceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEE
Q 013008          362 ISN-PAFLAS----------KLARNPHVKDV-RG-LGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVR  420 (451)
Q Consensus       362 ~~~-~~~~~~----------~~~~~~~~~~v-~g-~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~ir  420 (451)
                      ++. ++..++          .++.+. +... .+ .|.++++.+..  ...++.+.|+++||++.++..      .+.+|
T Consensus       311 ~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR  389 (427)
T 2w8t_A          311 LMTAHEKRERLWSNARALHGGLKAMG-FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLR  389 (427)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHHHHHHT-CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEE
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHcC-CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEE
Confidence            765 443333          122222 2222 34 67888888842  466799999999999987632      15799


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          421 LVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       421 i~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ++++..++++++++++++|+++++++..
T Consensus       390 i~~~~~~t~e~i~~~~~~l~~~l~~~~~  417 (427)
T 2w8t_A          390 CSICAEHTPAQIQTVLGMFQAAGRAVGV  417 (427)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999987653

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=4.6e-35  Score=292.53  Aligned_cols=338  Identities=17%  Similarity=0.200  Sum_probs=255.3

Q ss_pred             ccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCC-CCCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHH
Q 013008           75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKR  148 (451)
Q Consensus        75 ~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~  148 (451)
                      .++.+.|..+++++|.+++| +|++||||.++   .++| |++|++.+++.++++++.+.+.     ....+...+++++
T Consensus        21 ~~~~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~   96 (399)
T 3tqx_A           21 AGLYKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKD   96 (399)
T ss_dssp             TTCCCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHH
T ss_pred             cCCccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHH
Confidence            33445677889999999999 99999999998   3588 6899999999999987543221     1234558899999


Q ss_pred             HhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCee
Q 013008          149 LVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN  228 (451)
Q Consensus       149 l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (451)
                      ++++++.+..+++++|++|+..+++++.           .+++.|++.+|.|++.. ......+            ..+.
T Consensus        97 la~~~~~~~~i~~~sGt~a~~~~l~~~~-----------~~gd~v~~~~~~~~~~~-~~~~~~g------------~~~~  152 (399)
T 3tqx_A           97 ISEFLGTDDTILYSSCFDANGGLFETLL-----------GPEDAIISDELNHASII-DGIRLCK------------AQRY  152 (399)
T ss_dssp             HHHHHTCSEEEEESCHHHHHHTTHHHHC-----------CTTCEEEEETTCCHHHH-HHHHSCC------------SEEE
T ss_pred             HHHHHCCCcEEEECchHHHHHHHHHHhc-----------CCCCEEEECCcccHHHH-HHHHHcC------------Ccee
Confidence            9999997778888899999999988654           15788888888775543 3333322            2344


Q ss_pred             EeeCCCHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCC-Ccccccccc
Q 013008          229 FVEYGNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGL-GRTGYLWAH  301 (451)
Q Consensus       229 ~~~~~d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~-gr~G~~~~~  301 (451)
                      .++.+|+++|+++++.     .++++|+++++++++|.+.+    +++|.++|++||+++|+||+| .|+ +..+.. ..
T Consensus       153 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~  227 (399)
T 3tqx_A          153 RYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TP  227 (399)
T ss_dssp             EECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HH
T ss_pred             EeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hH
Confidence            5666788999998863     27899999999999998776    999999999999999999999 453 444433 45


Q ss_pred             cccCC--Cccee--eecccccCCcccccccccHHHHhhccCCCc--cCCCCCcHHHHHHHHHHHHHh-cC-hHHHHH---
Q 013008          302 EHYGI--FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKI-SN-PAFLAS---  370 (451)
Q Consensus       302 ~~~~~--~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~--~~t~~~~~~~~aaa~aal~~~-~~-~~~~~~---  370 (451)
                      +.+++  .+|++  ++||+++ |++.|++++++++++.+.....  ..+.+.+++.++++.++++.+ +. ++..++   
T Consensus       228 ~~~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  306 (399)
T 3tqx_A          228 EYCGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQE  306 (399)
T ss_dssp             HHHTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HhhCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            55666  77887  8999998 6788999999999988764322  234467899999999999876 22 222222   


Q ss_pred             -------HHhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHH
Q 013008          371 -------KLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       371 -------~~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~  435 (451)
                             .++++ .+..+++.|.++++.+..  ...++++.|+++||.+.++..      .+.+|++++..+++++++++
T Consensus       307 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~  385 (399)
T 3tqx_A          307 NSRYFRAGMEKL-GFQLVPGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRA  385 (399)
T ss_dssp             HHHHHHHHHHHH-TCCBCCCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCcCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHH
Confidence                   12222 233346778888888742  467899999999999986532      25899999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 013008          436 VEILCKTLPVLD  447 (451)
Q Consensus       436 l~~l~~~l~~~~  447 (451)
                      +++|+++++++.
T Consensus       386 ~~~l~~~~~~~~  397 (399)
T 3tqx_A          386 IEAFGQVGKKLG  397 (399)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998753

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=3.1e-34  Score=287.12  Aligned_cols=340  Identities=15%  Similarity=0.165  Sum_probs=254.3

Q ss_pred             CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC--CC---CCHHHHHHHHHHh
Q 013008           77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN--MY---YSIPQIELAKRLV  150 (451)
Q Consensus        77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~--~~---~~~~~~~l~~~l~  150 (451)
                      +.+.|..+.+++|+++||.+|++||||.++.   ++|+ ++|++.+++.++++++...+.  .+   ......+++++++
T Consensus        24 ~~~~~~~~~~~~g~~~~~~~g~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la  100 (401)
T 1fc4_A           24 LFKEERIITSAQQADITVADGSHVINFCANN---YLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA  100 (401)
T ss_dssp             CCCCCCCBCSCSSSEEEBTTSCEEEECCCSC---TTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred             CeeeeeeeccCCCceEEeeCCccEEEeeccC---cccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHH
Confidence            4467889999999999999999999999983   4997 899999999999887543211  11   1456889999999


Q ss_pred             hccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEe
Q 013008          151 ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV  230 (451)
Q Consensus       151 ~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (451)
                      ++++.+..+++++|++|+..+++++.   +        +++.|++.++.| +.....+...+            ..+..+
T Consensus       101 ~~~g~~~~i~~~sGs~a~~~~~~~~~---~--------~gd~v~~~~~~~-~~~~~~~~~~g------------~~~~~~  156 (401)
T 1fc4_A          101 AFLGMEDAILYSSCFDANGGLFETLL---G--------AEDAIISDALNH-ASIIDGVRLCK------------AKRYRY  156 (401)
T ss_dssp             HHHTCSEEEEESCHHHHHHTTHHHHC---C--------TTCEEEEETTCC-HHHHHHHHTSC------------SEEEEE
T ss_pred             HHhCCCcEEEeCChHHHHHHHHHHHc---C--------CCCEEEEcchhH-HHHHHHHHHcC------------CceEEE
Confidence            99986677888899999999988653   1        577788777765 43333333222            223455


Q ss_pred             eCCCHHHHHHhcCC--C---CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CC-Ccccccccccc
Q 013008          231 EYGNIEATRKLIQP--G---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLWAHEH  303 (451)
Q Consensus       231 ~~~d~~~le~~l~~--~---~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~~~~~  303 (451)
                      +..|+++|+++++.  .   ++++|+++++++++|.+.+    +++|+++|++||+++|+||+|. |+ ++.|..+ .+.
T Consensus       157 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~  231 (401)
T 1fc4_A          157 ANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEY  231 (401)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHH
T ss_pred             CCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHH
Confidence            66799999998863  1   5789999998888888766    9999999999999999999994 87 3455542 333


Q ss_pred             cCCC--ccee--eecccccCCcccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH------
Q 013008          304 YGIF--PDIM--TLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLAS------  370 (451)
Q Consensus       304 ~~~~--pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~------  370 (451)
                      .++.  .|++  ++||.++++. .|++++++++++.+....  ...+++.++++++++.++|+.+.. ++..++      
T Consensus       232 ~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  310 (401)
T 1fc4_A          232 CDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANAR  310 (401)
T ss_dssp             TTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4544  3666  8999996654 599999999998876432  233668899999999999987643 333332      


Q ss_pred             ----HHhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHH
Q 013008          371 ----KLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEI  438 (451)
Q Consensus       371 ----~~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~  438 (451)
                          .++++. +..+.+.|.++++.+..  ...++.+.|.++||.+.++..      .+.+|++++..++++++++++++
T Consensus       311 ~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  389 (401)
T 1fc4_A          311 QFREQMSAAG-FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEA  389 (401)
T ss_dssp             HHHHHHHHTT-CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHcC-CcccCCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence                222232 22235678898988842  466789999999999987642      24799999988999999999999


Q ss_pred             HHHHHHHHhhcC
Q 013008          439 LCKTLPVLDSNS  450 (451)
Q Consensus       439 l~~~l~~~~~~~  450 (451)
                      |++++++++-.|
T Consensus       390 l~~~~~~~~~~~  401 (401)
T 1fc4_A          390 FTRIGKQLGVIA  401 (401)
T ss_dssp             HHHHHHHTTSCC
T ss_pred             HHHHHHHhCCCC
Confidence            999998876544

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=2.1e-34  Score=286.93  Aligned_cols=340  Identities=12%  Similarity=0.067  Sum_probs=249.9

Q ss_pred             eEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC----CCe
Q 013008           82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADR  157 (451)
Q Consensus        82 ~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~e~  157 (451)
                      ++..+++|+++||.+|++||||..+..  .+ +.+|+|.+++.+++++..+.+.....+.+.++++++.+.++    .++
T Consensus        11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~   87 (391)
T 3dzz_A           11 HVPKRQGNSIKWGVLKEKELPMWIAEM--DF-KIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW   87 (391)
T ss_dssp             SCCCCCTTBTTTTTCCTTCEECCSSCC--SS-CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred             hhccCCCCccceeccCCCceeccccCC--CC-CCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence            566789999999999999999998743  34 48999999999998864333332334457788888887765    679


Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCeeEeeCCCH
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNI  235 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~  235 (451)
                      |++++||++|+..+++++.           .++++|++.+|+||++.......+.... .   .+..  .+...   .|+
T Consensus        88 i~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~~~~~---~d~  149 (391)
T 3dzz_A           88 CVFASGVVPAISAMVRQFT-----------SPGDQILVQEPVYNMFYSVIEGNGRRVI-S---SDLIYENSKYS---VNW  149 (391)
T ss_dssp             EEEESCHHHHHHHHHHHHS-----------CTTCEEEECSSCCHHHHHHHHHTTCEEE-E---CCCEEETTEEE---CCH
T ss_pred             EEECCCHHHHHHHHHHHhC-----------CCCCeEEECCCCcHHHHHHHHHcCCEEE-E---eeeeecCCcee---ecH
Confidence            9999999999999999764           1589999999999987655443332211 1   1110  11100   389


Q ss_pred             HHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cccccccCC-Ccc----
Q 013008          236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGI-FPD----  309 (451)
Q Consensus       236 ~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~-~pd----  309 (451)
                      ++|+++++..++++|+++.+++++|. +++.+.+++|+++|++||+++|+||+|+++.+.|. ......++. .+|    
T Consensus       150 ~~l~~~l~~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~  228 (391)
T 3dzz_A          150 ADLEEKLATPSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVS  228 (391)
T ss_dssp             HHHHHHHTSTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEE
T ss_pred             HHHHHHHhccCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEE
Confidence            99999998557788877777777775 56888899999999999999999999999877774 223333332 267    


Q ss_pred             eeeeccccc-CCccccccccc-HHHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HH
Q 013008          310 IMTLAKPLA-GGLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KL  372 (451)
Q Consensus       310 i~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~  372 (451)
                      +.++||+++ +|+|+|+++++ +++++.+.... ...+++.++++++++.++|+..  +++.++              .+
T Consensus       229 ~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l  306 (391)
T 3dzz_A          229 LISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG--HDWLRELKQVLRDNFAYAREFL  306 (391)
T ss_dssp             EECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHH
Confidence            557899998 78999999997 88988876432 2345678999999999988752  222211              23


Q ss_pred             hC-CCCcceeccc-ceeEEEEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          373 AR-NPHVKDVRGL-GLIIGIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       373 ~~-~~~~~~v~g~-G~~~~~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      ++ +|.+....+. ++++++.+.   .+..++.+.|+ ++||.+.++..     .+.+|++++  ++++++++++++|.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~  384 (391)
T 3dzz_A          307 AKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQ  384 (391)
T ss_dssp             HHHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHH
T ss_pred             HhhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence            33 5655444444 445567774   36788999997 89999987531     267999766  699999999999999


Q ss_pred             HHHHHh
Q 013008          442 TLPVLD  447 (451)
Q Consensus       442 ~l~~~~  447 (451)
                      ++++++
T Consensus       385 ~l~~~~  390 (391)
T 3dzz_A          385 GVLNLN  390 (391)
T ss_dssp             HHHTCC
T ss_pred             HHHHhh
Confidence            998654

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=2.3e-34  Score=285.40  Aligned_cols=328  Identities=15%  Similarity=0.074  Sum_probs=239.3

Q ss_pred             EeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC----CCeEEe
Q 013008           85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADRVFF  160 (451)
Q Consensus        85 ~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~e~v~~  160 (451)
                      .+++|+++||.+|++||||.++..  .++ .+|+|.+++.+++.+..+.+.....+.+..+++++.+.++    .+++++
T Consensus        10 ~~~~g~~~~d~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~   86 (377)
T 3fdb_A           10 LRARNTMKWTRYGQGVLPLWVAES--DFS-TCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWIFP   86 (377)
T ss_dssp             HHHTCCHHHHSSCTTSEECCSSCC--CSC-CCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred             hcCCCCceeeccCCCeeeecccCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEE
Confidence            379999999999999999998853  454 8999999999998863322221224557777777765543    679999


Q ss_pred             cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC---CCHHH
Q 013008          161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---GNIEA  237 (451)
Q Consensus       161 ~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~  237 (451)
                      ++||++|++.+++.+.           .++++|++.+|+||++.......+..             +..+|.   .|+++
T Consensus        87 t~g~~~a~~~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~d~~~  142 (377)
T 3fdb_A           87 IPDVVRGLYIAIDHFT-----------PAQSKVIVPTPAYPPFFHLLSATQRE-------------GIFIDATGGINLHD  142 (377)
T ss_dssp             ESCHHHHHHHHHHHHS-----------CTTCCEEEEESCCTHHHHHHHHHTCC-------------EEEEECTTSCCHHH
T ss_pred             eCChHHHHHHHHHHhc-----------CCCCEEEEcCCCcHhHHHHHHHcCCE-------------EEEccCCCCCCHHH
Confidence            9999999999999764           15789999999999886554333221             222333   28999


Q ss_pred             HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc-c----cccccccCCCcceee
Q 013008          238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-Y----LWAHEHYGIFPDIMT  312 (451)
Q Consensus       238 le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~----~~~~~~~~~~pdi~t  312 (451)
                      |+++++++..++++++| ++++|. .++.+.+++|+++|++||+++|+||+|+++.+.| .    .......+..+++.+
T Consensus       143 l~~~l~~~~~~v~i~~p-~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s  220 (377)
T 3fdb_A          143 VEKGFQAGARSILLCNP-YNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITA  220 (377)
T ss_dssp             HHHHHHTTCCEEEEESS-BTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEEC
T ss_pred             HHHHhccCCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEe
Confidence            99999765445555555 566665 5688889999999999999999999999987776 2    112222334466778


Q ss_pred             eccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhC-C
Q 013008          313 LAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLAR-N  375 (451)
Q Consensus       313 ~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~-~  375 (451)
                      +||++| +|+|+||+++ ++++++.+.......+++.|+++++++.++|+..  ++++++              .+++ +
T Consensus       221 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~  298 (377)
T 3fdb_A          221 PSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG--TDFLNQEVAYLKNNHDFLLHEIPKRI  298 (377)
T ss_dssp             STTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999997 6899998765 7889888876655667889999999999998853  222221              2233 5


Q ss_pred             CCcceecccce-eEEEEecC--ChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          376 PHVKDVRGLGL-IIGIEFDV--SATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       376 ~~~~~v~g~G~-~~~~~~~~--~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      |.+..+.+.+. ++++.+..  ...++++.|+++ ||++.|+..     .+.+|++++  .++|++++++++|.+++++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          299 PGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             TTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred             CCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence            55554555544 44677742  235678888876 999987631     378999866  4899999999999998865

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=5.9e-33  Score=276.84  Aligned_cols=338  Identities=12%  Similarity=0.104  Sum_probs=226.1

Q ss_pred             EEEeecccEEEecCCC-----EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH-HHHHHHHHHhhccC--
Q 013008           83 VLASGKGCKLYDAEGR-----EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSF--  154 (451)
Q Consensus        83 ~~~~~~G~~l~d~~G~-----~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~--  154 (451)
                      +-.+++|+++||.+|+     ++|||.++..  .+| .+|+|.+++.+++++....+.....+ .+.++++++.+.++  
T Consensus         8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~   84 (390)
T 1d2f_A            8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTA   84 (390)
T ss_dssp             ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCC
Confidence            4468999999999997     7899987754  566 78999999999987532222222445 56677777665544  


Q ss_pred             --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEee
Q 013008          155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVE  231 (451)
Q Consensus       155 --~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  231 (451)
                        .++|++++||++|++.+++++.           .++++|++.+|+||++.......+.. ...   .+..++ ..+  
T Consensus        85 ~~~~~v~~t~g~~~al~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~-~~~---v~~~~~~~~~--  147 (390)
T 1d2f_A           85 IDSQTVVYGPSVIYMVSELIRQWS-----------ETGEGVVIHTPAYDAFYKAIEGNQRT-VMP---VALEKQADGW--  147 (390)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHSS-----------CTTCEEEEEESCCHHHHHHHHHTTCE-EEE---EECEECSSSE--
T ss_pred             CCHHHEEEcCCHHHHHHHHHHHhc-----------CCCCEEEEcCCCcHHHHHHHHHCCCE-EEE---eecccCCCcc--
Confidence              6789999999999999999664           15789999999999987654433221 111   111100 000  


Q ss_pred             CCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCc---
Q 013008          232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP---  308 (451)
Q Consensus       232 ~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p---  308 (451)
                      ..|+++|++++++.++++|++...++++|. +++.+++++|+++|++||++||+||+|+++.+.|..+. ....+.+   
T Consensus       148 ~~d~~~l~~~l~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~  225 (390)
T 1d2f_A          148 FCDMGKLEAVLAKPECKIMLLCSPQNPTGK-VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVARGDW  225 (390)
T ss_dssp             ECCHHHHHHHHTSTTEEEEEEESSCTTTCC-CCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCCSSE
T ss_pred             ccCHHHHHHHhccCCCeEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcchhhH
Confidence            038999999997546777776555666665 46788999999999999999999999999877664321 1112222   


Q ss_pred             c-eeeeccccc-CCccccccccc-HHHHhhccCCCc-cCCC-CCcHHHHHHHHHHHHHhcChHHHHH-------------
Q 013008          309 D-IMTLAKPLA-GGLPIGAALVT-EKVASAINYGDH-GSTF-AGSPLVCNAAIAVLDKISNPAFLAS-------------  370 (451)
Q Consensus       309 d-i~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~-~~t~-~~~~~~~aaa~aal~~~~~~~~~~~-------------  370 (451)
                      | +.++||.++ +|+|+|+++++ +++++.+..... ..++ +.|+++++++.++|+..  ++++++             
T Consensus       226 d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~  303 (390)
T 1d2f_A          226 ALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIA  303 (390)
T ss_dssp             EEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHH
Confidence            3 889999998 78999999985 788887764444 4565 67999999999988742  222221             


Q ss_pred             -HHhC-CCCcceecccc-eeEEEEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHH
Q 013008          371 -KLAR-NPHVKDVRGLG-LIIGIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEI  438 (451)
Q Consensus       371 -~~~~-~~~~~~v~g~G-~~~~~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~  438 (451)
                       .+++ +|.+..+++.| +++++.+.   .+..++.+.|+ ++||++.++..     .+.+|++++.  +++++++++++
T Consensus       304 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~  381 (390)
T 1d2f_A          304 DKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAG  381 (390)
T ss_dssp             HHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHH
T ss_pred             HHHHhhCCCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHH
Confidence             2333 55555455555 45577874   35778999999 58999988631     3689998775  68999999999


Q ss_pred             HHHHHHHH
Q 013008          439 LCKTLPVL  446 (451)
Q Consensus       439 l~~~l~~~  446 (451)
                      |.++++++
T Consensus       382 l~~~l~~~  389 (390)
T 1d2f_A          382 LINAIRAV  389 (390)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998765

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=100.00  E-value=5e-34  Score=286.64  Aligned_cols=325  Identities=17%  Similarity=0.139  Sum_probs=243.0

Q ss_pred             eecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhccccc-----CCCCCHHHHHHHHHHhhccCCCeEE
Q 013008           86 SGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-----NMYYSIPQIELAKRLVACSFADRVF  159 (451)
Q Consensus        86 ~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~e~v~  159 (451)
                      ++.+.+++|.+|++||||+++.+   +|+ .||+|.+++.++++++....     .....+...+++++++++++.+.++
T Consensus        47 ~~~~~~~~~~~g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i  123 (409)
T 3kki_A           47 NGKHLVLGKQASPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECL  123 (409)
T ss_dssp             TSSCTTCCCCCCTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEE
T ss_pred             CCCeeeeCCCCCCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEE
Confidence            57788889999999999999765   666 68999999999998743211     1122344678999999999988888


Q ss_pred             ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHH
Q 013008          160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR  239 (451)
Q Consensus       160 ~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le  239 (451)
                      ++++|++|+..+++++.   +        ++|.|++.++.|.. ...++...+.            .+..++.+|+++|+
T Consensus       124 ~~~sGt~a~~~~l~~~~---~--------~gd~Vl~~~~~~~~-~~~~~~~~g~------------~~~~~~~~d~~~le  179 (409)
T 3kki_A          124 LSQSGWNANVGLLQTIC---Q--------PNTNVYIDFFAHMS-LWEGARYANA------------QAHPFMHNNCDHLR  179 (409)
T ss_dssp             EESCHHHHHHHHHHHHC---C--------TTCEEEEETTSCHH-HHHHHHHTTC------------EEEEECTTCHHHHH
T ss_pred             EecchHHHHHHHHHHhc---C--------CCCEEEECCCcCHH-HHHHHHHcCC------------eEEEecCCCHHHHH
Confidence            88999999999998654   1        57888887776644 3344333321            23345567999999


Q ss_pred             HhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC--CCcccccccccccCC--Ccce--eee
Q 013008          240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGI--FPDI--MTL  313 (451)
Q Consensus       240 ~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~~~~~--~pdi--~t~  313 (451)
                      ++++..++++|+++++++++|.+.+    +++|+++|++||++||+||+|++  +|++|..+. ..+++  .+|+  .++
T Consensus       180 ~~l~~~~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~  254 (409)
T 3kki_A          180 MLIQRHGPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASL  254 (409)
T ss_dssp             HHHHHHCSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEES
T ss_pred             HHHHhcCCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeec
Confidence            9997545689999999999998776    99999999999999999999987  777776543 45565  4666  689


Q ss_pred             cccccCCcccccccccHHHHhhccCCCcc--CCCCCcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCCCcce
Q 013008          314 AKPLAGGLPIGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISN-PAFLAS----------KLARNPHVKD  380 (451)
Q Consensus       314 sK~lg~G~~iG~v~~~~~i~~~~~~~~~~--~t~~~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~~~~~  380 (451)
                      ||++++|  .|++++++++++.+......  .+.+.+++.++++.++++.++. +.+.++          .++... + .
T Consensus       255 sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~  330 (409)
T 3kki_A          255 AKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-L-T  330 (409)
T ss_dssp             SSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT-C-C
T ss_pred             chhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-C-c
Confidence            9999865  59999999988877543222  2334688999999999987643 233322          223332 1 1


Q ss_pred             ecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          381 VRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       381 v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +.+.|.++++.+..  ...++.+.|+++||++.+...      .+.+|++++..++++++++++++|+++++..
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  404 (409)
T 3kki_A          331 IRSESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG  404 (409)
T ss_dssp             CCCSSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence            34678888888742  356789999999999875321      2689999999999999999999999998753

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=1.5e-32  Score=274.61  Aligned_cols=331  Identities=18%  Similarity=0.152  Sum_probs=248.6

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhc
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVAC  152 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~  152 (451)
                      +.|+.+++++|.++| .+|+++|||.++.+   +|+ .+|.+.+++.+++++....+.     .+..+...+++++++++
T Consensus        25 ~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~  100 (398)
T 3a2b_A           25 AYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAY  100 (398)
T ss_dssp             CSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred             cceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence            578899999999999 89999999999855   788 899999999999876433211     12356688999999999


Q ss_pred             cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       153 ~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                      ++.+++++++||++|+..+++++.           .+++.|++.+|+|.+.. ..+...+            ..+..++.
T Consensus       101 ~g~~~v~~~~ggt~a~~~~~~~~~-----------~~gd~V~~~~p~~~~~~-~~~~~~g------------~~~~~v~~  156 (398)
T 3a2b_A          101 VGKEAAILFSTGFQSNLGPLSCLM-----------GRNDYILLDERDHASII-DGSRLSF------------SKVIKYGH  156 (398)
T ss_dssp             HTCSEEEEESSHHHHHHHHHHHSS-----------CTTCEEEEETTCCHHHH-HHHHHSS------------SEEEEECT
T ss_pred             hCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEECCccCHHHH-HHHHHcC------------CceEEeCC
Confidence            998999999999999999999764           15788999988876553 3333322            12345566


Q ss_pred             CCHHHHHHhcCCC---CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC--CcccccccccccCCC
Q 013008          233 GNIEATRKLIQPG---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYGIF  307 (451)
Q Consensus       233 ~d~~~le~~l~~~---~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~~~~~~~  307 (451)
                      .|+++|+++++..   ++++|+++++++++|.+.+    +++|+++|++||+++|+||+|..+  ++.+... .+.+++.
T Consensus       157 ~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~  231 (398)
T 3a2b_A          157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLN  231 (398)
T ss_dssp             TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCG
T ss_pred             CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCC
Confidence            7999999998742   6889999999888888766    999999999999999999999643  3434332 3344543


Q ss_pred             --ccee--eecccccC-CcccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH---------
Q 013008          308 --PDIM--TLAKPLAG-GLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN-PAFLAS---------  370 (451)
Q Consensus       308 --pdi~--t~sK~lg~-G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~---------  370 (451)
                        +|++  ++||.++. |   |++++++++++.+...  .+..+...+++.++++.++|+.++. ++..++         
T Consensus       232 ~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~  308 (398)
T 3a2b_A          232 DDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAK  308 (398)
T ss_dssp             GGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred             cCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence              5777  89999984 4   9999999998887642  2344555677777677788876421 122222         


Q ss_pred             -HHhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          371 -KLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       371 -~~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                       .++++ .+..+++.|.++++.+..  +..++.+.|+++||.+.++..      .+.+|++++..++++++++++++|++
T Consensus       309 ~~L~~~-g~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~  387 (398)
T 3a2b_A          309 AQLLDH-GFDLGATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVK  387 (398)
T ss_dssp             HHHHHT-TCCBCSCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhc-CCCcCCCCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHH
Confidence             22223 233345668888888742  466799999999999988642      26799999988899999999999999


Q ss_pred             HHHHH
Q 013008          442 TLPVL  446 (451)
Q Consensus       442 ~l~~~  446 (451)
                      +++++
T Consensus       388 ~l~~~  392 (398)
T 3a2b_A          388 VFKQA  392 (398)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            98765

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=2.7e-33  Score=280.09  Aligned_cols=341  Identities=13%  Similarity=0.079  Sum_probs=240.0

Q ss_pred             EEEeecccEEEecCCC-------EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-
Q 013008           83 VLASGKGCKLYDAEGR-------EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-  154 (451)
Q Consensus        83 ~~~~~~G~~l~d~~G~-------~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-  154 (451)
                      +..+|+|+++||.+|+       +++||.++..  .++ .+|.+.+++.+++++....+.....+.+.++++++.+.++ 
T Consensus         9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~   85 (399)
T 1c7n_A            9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQW   85 (399)
T ss_dssp             CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             ccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence            4457999999998884       7899988763  455 6899999999998753222221222335556666555444 


Q ss_pred             ---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC-CCeeEe
Q 013008          155 ---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFV  230 (451)
Q Consensus       155 ---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  230 (451)
                         .++|++++||++|+..+++++.           .++++|++.+|+||++.......+ .....   .+.. .+..+.
T Consensus        86 ~~~~~~v~~t~g~~~a~~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g-~~~~~---~~~~~~~g~~~  150 (399)
T 1c7n_A           86 DIQTDWIINTAGVVPAVFNAVREFT-----------KPGDGVIIITPVYYPFFMAIKNQE-RKIIE---CELLEKDGYYT  150 (399)
T ss_dssp             CCCGGGEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSSCCTHHHHHHHTTT-CEEEE---CCCEEETTEEE
T ss_pred             CCChhhEEEcCCHHHHHHHHHHHhc-----------CCCCEEEEcCCCcHhHHHHHHHcC-CEEEe---cccccCCCCEE
Confidence               6789999999999999999764           157899999999999876544332 21111   1111 000010


Q ss_pred             eCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-ccccc-----c
Q 013008          231 EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH-----Y  304 (451)
Q Consensus       231 ~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~-----~  304 (451)
                        .|+++|+++++..++++|+++..++++|. +++++++++|+++|++||++||+||+|+++++.|.. .....     .
T Consensus       151 --~d~~~l~~~l~~~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  227 (399)
T 1c7n_A          151 --IDFQKLEKLSKDKNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA  227 (399)
T ss_dssp             --CCHHHHHHHHTCTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred             --EcHHHHHHHhccCCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence              38999999997446777777656666665 578999999999999999999999999998766642 12221     2


Q ss_pred             CCCcceeeeccccc-CCccccccccc-HHHHhhccCCCccCCC-CCcHHHHHHHHHHHHHhcChHHHHH-----------
Q 013008          305 GIFPDIMTLAKPLA-GGLPIGAALVT-EKVASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLAS-----------  370 (451)
Q Consensus       305 ~~~pdi~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~-----------  370 (451)
                      +....+.++||.++ +|+|+|+++++ +++++.+.......++ +.|+++++++.++|+..  ++++++           
T Consensus       228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~  305 (399)
T 1c7n_A          228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCIKVIDKNQRI  305 (399)
T ss_dssp             TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHH
Confidence            33445668999998 78999999986 6788887654334444 57899999999888742  222222           


Q ss_pred             ---HHhC-CCCcceecccce-eEEEEec---CChHHHHHHHH-HCCceeeecC-----CCCEEEEeCCCCCCHHHHHHHH
Q 013008          371 ---KLAR-NPHVKDVRGLGL-IIGIEFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       371 ---~~~~-~~~~~~v~g~G~-~~~~~~~---~~~~~~~~~l~-~~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l  436 (451)
                         .+++ +|.+..+++.|. ++++.+.   .+..++.+.|+ ++||++.|+.     ..+.+|++++.  +++++++++
T Consensus       306 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~l~~~l  383 (399)
T 1c7n_A          306 VKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA--PSSVIQESL  383 (399)
T ss_dssp             HHHHHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS--CHHHHHHHH
T ss_pred             HHHHHHhhCCCCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc--CHHHHHHHH
Confidence               2333 665555556554 4567874   35778999998 6899998863     13689998765  489999999


Q ss_pred             HHHHHHHHHHhh
Q 013008          437 EILCKTLPVLDS  448 (451)
Q Consensus       437 ~~l~~~l~~~~~  448 (451)
                      ++|.++++++++
T Consensus       384 ~~l~~~l~~~~~  395 (399)
T 1c7n_A          384 ERLNKALKDLKN  395 (399)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=1.8e-33  Score=280.25  Aligned_cols=337  Identities=12%  Similarity=0.047  Sum_probs=242.3

Q ss_pred             eEEEeecccEEEecCCCEE-----EeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--
Q 013008           82 VVLASGKGCKLYDAEGREY-----LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--  154 (451)
Q Consensus        82 ~~~~~~~G~~l~d~~G~~~-----iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--  154 (451)
                      ++..+++|+++||.+|++|     |||.++..   ..+.+|+|.+++.+++++..+.+..+..+.+.++++++++.++  
T Consensus        11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~   87 (391)
T 4dq6_A           11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADM---DFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK   87 (391)
T ss_dssp             CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSC---SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred             ccccccCCceeeeecccccCCCCceeccccCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            4456799999999986555     99998753   3357899999999999864443333445558889999988765  


Q ss_pred             --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       155 --~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                        .+++++++||++|++.+++++.           .++++|++.+|+||++.......+.... ..++.+...+...   
T Consensus        88 ~~~~~v~~~~g~~~a~~~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~---  152 (391)
T 4dq6_A           88 IKSEWLIYSPGVIPAISLLINELT-----------KANDKIMIQEPVYSPFNSVVKNNNRELI-ISPLQKLENGNYI---  152 (391)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHHS-----------CTTCEEEECSSCCTHHHHHHHHTTCEEE-ECCCEECTTSCEE---
T ss_pred             CcHHHeEEcCChHHHHHHHHHHhC-----------CCCCEEEEcCCCCHHHHHHHHHcCCeEE-eeeeeecCCCceE---
Confidence              6799999999999999999764           1588999999999998765543332211 1111100011111   


Q ss_pred             CCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc-----CC
Q 013008          233 GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-----GI  306 (451)
Q Consensus       233 ~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~-----~~  306 (451)
                      -|+++|++++++  +++|+++.+++++|. +++.+.+++|+++|++||++||+||+|+++.+.|... ....+     +.
T Consensus       153 ~d~~~l~~~l~~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  229 (391)
T 4dq6_A          153 MDYEDIENKIKD--VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKN  229 (391)
T ss_dssp             CCHHHHHHHCTT--EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHT
T ss_pred             eeHHHHHHHhhc--CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCc
Confidence            189999999976  777777666666775 5688889999999999999999999999987776421 11111     22


Q ss_pred             Ccceeeeccccc-CCcccccccccH-HHHhhccCC-CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------------
Q 013008          307 FPDIMTLAKPLA-GGLPIGAALVTE-KVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------------  370 (451)
Q Consensus       307 ~pdi~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------------  370 (451)
                      .+.+.++||.++ +|+|+|++++++ ++++.+... ....+++.|+++++++.++++..  +++.++             
T Consensus       230 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~  307 (391)
T 4dq6_A          230 TITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG--ESWLESFLEYLESNIDFAI  307 (391)
T ss_dssp             EEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHH
Confidence            344668999998 689999999875 888877643 23345678999999999998852  222222             


Q ss_pred             -HHhC-CCCcceeccccee-EEEEec---CChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHH
Q 013008          371 -KLAR-NPHVKDVRGLGLI-IGIEFD---VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEI  438 (451)
Q Consensus       371 -~~~~-~~~~~~v~g~G~~-~~~~~~---~~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~  438 (451)
                       .+++ +|.+..+++.|.+ .++.+.   .+..++.+.|+++ ||++.|+..     .+.+|++++  +++|++++++++
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~  385 (391)
T 4dq6_A          308 KYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIR  385 (391)
T ss_dssp             HHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHH
T ss_pred             HHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHH
Confidence             2233 5655555555544 457774   3678899999998 999987521     378999776  699999999999


Q ss_pred             HHHHH
Q 013008          439 LCKTL  443 (451)
Q Consensus       439 l~~~l  443 (451)
                      |++++
T Consensus       386 l~~~l  390 (391)
T 4dq6_A          386 IKNAI  390 (391)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=100.00  E-value=3.6e-32  Score=270.50  Aligned_cols=337  Identities=19%  Similarity=0.163  Sum_probs=248.2

Q ss_pred             HhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCC-CCCHHHHHHHHHHHhhcccc--cC---CCCCHHHH
Q 013008           70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHV--SN---MYYSIPQI  143 (451)
Q Consensus        70 ~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~--~~---~~~~~~~~  143 (451)
                      .+.....+.+.|+.+.+++|.+++ .+|++||||.++.+   +| +.+|++.+++.+++++....  ..   ........
T Consensus        12 ~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~   87 (384)
T 1bs0_A           12 DARRAADALRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQ   87 (384)
T ss_dssp             HHCCGGGCCCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHH
T ss_pred             HHHHhcCCccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHH
Confidence            334444556788899999999999 79999999999854   78 58999999999999874321  11   12446688


Q ss_pred             HHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC
Q 013008          144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV  223 (451)
Q Consensus       144 ~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  223 (451)
                      +++++++++++.++++++++|++|+..+++++.   +        +++.|++.++.| +.....+...+           
T Consensus        88 ~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~---~--------~gd~v~~~~~~~-~~~~~~~~~~g-----------  144 (384)
T 1bs0_A           88 ALEEELAEWLGYSRALLFISGFAANQAVIAAMM---A--------KEDRIAADRLSH-ASLLEAASLSP-----------  144 (384)
T ss_dssp             HHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC---C--------TTCEEEEETTCC-HHHHHHHHTSS-----------
T ss_pred             HHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhC---C--------CCcEEEEccccc-HHHHHHHHHcC-----------
Confidence            999999999997788888899999999998653   1        467777666654 55444443332           


Q ss_pred             CCCeeEeeCCCHHHHHHhcCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CC-Ccccccc
Q 013008          224 MPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLW  299 (451)
Q Consensus       224 ~~~~~~~~~~d~~~le~~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~  299 (451)
                       ..+..+|.+|+++|++++++.  .+++|+++++++++|.+.+    +++|+++|++||+++|+||+|. ++ ++.|..+
T Consensus       145 -~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~  219 (384)
T 1bs0_A          145 -SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS  219 (384)
T ss_dssp             -SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH
T ss_pred             -CCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch
Confidence             224456677999999998642  3788999988888888776    8999999999999999999995 32 3344432


Q ss_pred             cccccCCCccee--eecccccCCcccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcC---hHHHHH--
Q 013008          300 AHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN---PAFLAS--  370 (451)
Q Consensus       300 ~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~--  370 (451)
                       ...++..+|++  ++||.++.  +.|++++++++++.+...  ....+.+.|++.++++.++|+.+.+   ++..++  
T Consensus       220 -~~~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  296 (384)
T 1bs0_A          220 -CWLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLA  296 (384)
T ss_dssp             -HHHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             -HHhcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence             24556678888  89999973  449999999998887542  2233457899999999999987653   222222  


Q ss_pred             --------HHhCCCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHH
Q 013008          371 --------KLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQ  434 (451)
Q Consensus       371 --------~~~~~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~  434 (451)
                              .+++++ +....+.|.++++.+.  ....++.+.|.++||.+.++..      .+.+|++++..++++++++
T Consensus       297 ~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~  375 (384)
T 1bs0_A          297 ALITRFRAGVQDLP-FTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDR  375 (384)
T ss_dssp             HHHHHHHHHHTTSS-CEECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CcccCCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHH
Confidence                    223332 2223356778788774  2466799999999999987632      2579999998889999999


Q ss_pred             HHHHHHHH
Q 013008          435 AVEILCKT  442 (451)
Q Consensus       435 ~l~~l~~~  442 (451)
                      ++++|+++
T Consensus       376 ~~~~l~~~  383 (384)
T 1bs0_A          376 LLEVLHGN  383 (384)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999864

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=6.1e-33  Score=277.99  Aligned_cols=341  Identities=13%  Similarity=0.054  Sum_probs=235.4

Q ss_pred             EEEeecccEEEecCCC---EEEeeccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHhhccCC-
Q 013008           83 VLASGKGCKLYDAEGR---EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSFA-  155 (451)
Q Consensus        83 ~~~~~~G~~l~d~~G~---~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-  155 (451)
                      ++.+++|.++++..++   ++|||.+|.+. +++ .+|+|++|+.+++++..   +....+..+.+.++++++++.++. 
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~   98 (407)
T 3nra_A           21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP   98 (407)
T ss_dssp             ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            4567788777665544   59999998663 343 78999999999987532   212223345588899999888763 


Q ss_pred             ----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcC--C-CCCee
Q 013008          156 ----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP--V-MPGVN  228 (451)
Q Consensus       156 ----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~--~-~~~~~  228 (451)
                          +++++++||++|+..+++++.           .++++|++.+|+|+++.......+.... ..++.+  . ..+..
T Consensus        99 ~~~~~~i~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~  166 (407)
T 3nra_A           99 VDARDGLIITPGTQGALFLAVAATV-----------ARGDKVAIVQPDYFANRKLVEFFEGEMV-PVQLDYVSADETRAG  166 (407)
T ss_dssp             CCTTTSEEEESHHHHHHHHHHHTTC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEE-EEEBCCCSSCCSSCC
T ss_pred             CCCCCcEEEeCCcHHHHHHHHHHhC-----------CCCCEEEEcCCcccchHHHHHHcCCEEE-EeecccccccCcCCC
Confidence                799999999999999998653           1688999999999987654433322111 100000  0 00000


Q ss_pred             EeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccc----
Q 013008          229 FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH----  303 (451)
Q Consensus       229 ~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~----  303 (451)
                          .|+++|++++++ ++++|+++..++++|. +++.+++++|+++|++||+++|+||+|+++++.|..+ ....    
T Consensus       167 ----~d~~~l~~~l~~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~  240 (407)
T 3nra_A          167 ----LDLTGLEEAFKA-GARVFLFSNPNNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV  240 (407)
T ss_dssp             ----BCHHHHHHHHHT-TCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS
T ss_pred             ----cCHHHHHHHHhh-CCcEEEEcCCCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc
Confidence                189999999976 4445544444566665 5689999999999999999999999999887766532 2222    


Q ss_pred             -cCCCcceeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------
Q 013008          304 -YGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------  370 (451)
Q Consensus       304 -~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------  370 (451)
                       .+..+++.++||+++ +|+|+|++++++++++.+.......+++.++++++++.++|+.  .++++++           
T Consensus       241 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~  318 (407)
T 3nra_A          241 DAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDE  318 (407)
T ss_dssp             CGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHHH
Confidence             223355668999998 6899999999999998887555566777888888888777652  1122111           


Q ss_pred             ---HHhCCCCcceeccc-ceeEEEEec---CChHHHHHHHHH-CCceeeecC-----CCCEEEEeCCCCCCHHHHHHHHH
Q 013008          371 ---KLARNPHVKDVRGL-GLIIGIEFD---VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       371 ---~~~~~~~~~~v~g~-G~~~~~~~~---~~~~~~~~~l~~-~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l~  437 (451)
                         .+++++.+..+.+. |.++++.+.   ....++.+.|++ +||++.++.     ..+.+|++++.  ++++|+++++
T Consensus       319 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~  396 (407)
T 3nra_A          319 LLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAAR  396 (407)
T ss_dssp             HHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHH
T ss_pred             HHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHH
Confidence               33455555444444 477777763   356789999976 599998753     13679998774  9999999999


Q ss_pred             HHHHHHHHHh
Q 013008          438 ILCKTLPVLD  447 (451)
Q Consensus       438 ~l~~~l~~~~  447 (451)
                      +|.+++++++
T Consensus       397 ~l~~~~~~~~  406 (407)
T 3nra_A          397 RIVTLVERYR  406 (407)
T ss_dssp             HHHHHHHHHB
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=1.1e-31  Score=272.77  Aligned_cols=324  Identities=13%  Similarity=0.110  Sum_probs=231.7

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-----cccCCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-----HVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~  168 (451)
                      +..+|||.+|.+... ++.++++.+++.+++++..     +....+..+.+..+++.+.+..+   .++|++|+||++|+
T Consensus        75 ~~~~i~l~~g~p~~~-~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al  153 (448)
T 3aow_A           75 TSDIISLAGGLPNPK-TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL  153 (448)
T ss_dssp             TSSSEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred             CCCcEeCCCCCCCch-hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence            346899999887543 4788999999999887632     11111122234445544433335   47999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcC-
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQ-  243 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~-  243 (451)
                      +.+++++.           +++|.|++.+|+||++....... +.            .+..+|.    .|+++|+++++ 
T Consensus       154 ~~~~~~l~-----------~~Gd~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~g~d~~~L~~~l~~  209 (448)
T 3aow_A          154 DLIGRVFL-----------NPGDIVVVEAPTYLAALQAFNFY-EP------------QYIQIPLDDEGMKVEILEEKLKE  209 (448)
T ss_dssp             HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTT-CC------------EEEEEEEETTEECHHHHHHHHHH
T ss_pred             HHHHHHHc-----------CCCCEEEEeCCChHHHHHHHHHc-CC------------EEEEeccCCCCCCHHHHHHHHhh
Confidence            99999764           26899999999999986554322 21            1222222    28999999986 


Q ss_pred             ---C-CCeEEEEEcccc-CCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc----ccccccCCCcceeeec
Q 013008          244 ---P-GKTAAVFVEPIQ-GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEHYGIFPDIMTLA  314 (451)
Q Consensus       244 ---~-~~~aavi~ep~~-~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~~~~~~pdi~t~s  314 (451)
                         + .++++|++.|.. +++| .+++.+++++|.++|++||++||+||+|+++.+.|..    ...+..+..+++.+||
T Consensus       210 ~~~~~~~~k~v~~~~~~~NPtG-~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~S  288 (448)
T 3aow_A          210 LKSQGKKVKVVYTVPTFQNPAG-VTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFS  288 (448)
T ss_dssp             HHHTTCCEEEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEEST
T ss_pred             hhccCCCCeEEEECCCCCCCcC-CCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccch
Confidence               4 368888666654 4445 4578999999999999999999999999988665542    2222334556788999


Q ss_pred             ccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCCC-Cc
Q 013008          315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARNP-HV  378 (451)
Q Consensus       315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~~-~~  378 (451)
                      |.+++|+|+||+++++++++.+.......+++.|+++++++.++|+...-++++++               +.+.+| .+
T Consensus       289 K~~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~  368 (448)
T 3aow_A          289 KILAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGV  368 (448)
T ss_dssp             TTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred             hhccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            99998999999999999998886544455677899999999988874211122211               223345 35


Q ss_pred             ceecc-cceeEEEEec--CChHHHHHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          379 KDVRG-LGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       379 ~~v~g-~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ..+.+ .|+++|+.+.  .+..++++.|+++||++.|+.       ..+++|++++. .++|+|++++++|.+++++..
T Consensus       369 ~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~  446 (448)
T 3aow_A          369 KWTKPEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEEL  446 (448)
T ss_dssp             EECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCccEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            44443 4788888884  357789999999999998852       13689998876 489999999999999997653

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=8.9e-32  Score=269.75  Aligned_cols=324  Identities=14%  Similarity=0.088  Sum_probs=231.0

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC----CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM----YYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      |+++|||.++.+.. .|+.+|.+.+++.+++++......+    ...+.+.++++.+.+.++    .++|++++||++|+
T Consensus        33 g~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~  111 (407)
T 2zc0_A           33 GVKLISLAAGDPDP-ELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL  111 (407)
T ss_dssp             SCCCEECCSCCCCT-TTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred             CCceEeCCCCCCCc-hhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence            77899999887643 4788999999999998764311111    112234555555544335    67899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcC-
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQ-  243 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~-  243 (451)
                      +.+++++.           .++++|++.+|+||++...... .+..            +..+|.    .|+++|+++++ 
T Consensus       112 ~~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~-~g~~------------~~~v~~~~~~~d~~~l~~~l~~  167 (407)
T 2zc0_A          112 DLLGRVLI-----------DPGDVVITENPSYINTLLAFEQ-LGAK------------IEGVPVDNDGMRVDLLEEKIKE  167 (407)
T ss_dssp             HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHT-TTCE------------EEEEEEETTEECHHHHHHHHHH
T ss_pred             HHHHHHhc-----------CCCCEEEEeCCChHHHHHHHHH-cCCE------------EEEcccCCCCCCHHHHHHHHHh
Confidence            99999774           1588999999999987644322 2211            122222    28999999886 


Q ss_pred             ---C-CCeEEEEE-ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc---CCCcceeeec
Q 013008          244 ---P-GKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY---GIFPDIMTLA  314 (451)
Q Consensus       244 ---~-~~~aavi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~---~~~pdi~t~s  314 (451)
                         + .++++|++ +.+++++|. +++.+++++|+++|++||++||+||+|+++.+.|.. .....+   +..+++.++|
T Consensus       168 ~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  246 (407)
T 2zc0_A          168 LKAKGQKVKLIYTIPTGQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS  246 (407)
T ss_dssp             HHHTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred             hhcccCCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence               4 36777754 445566665 568999999999999999999999999988665542 222222   3334667899


Q ss_pred             ccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh--c---ChHHHHH-----------HHhCCCCc
Q 013008          315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI--S---NPAFLAS-----------KLARNPHV  378 (451)
Q Consensus       315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~---~~~~~~~-----------~~~~~~~~  378 (451)
                      |.+++|+|+|++++++++++.+.......+++.+++.++++.++|+..  +   -+...++           +.+..|.+
T Consensus       247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  326 (407)
T 2zc0_A          247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA  326 (407)
T ss_dssp             TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999988999999999999988865545567778999999999888753  1   0111111           22223433


Q ss_pred             cee-cccceeEEEEec--CChHHHHHHHHHC-CceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          379 KDV-RGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       379 ~~v-~g~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ..+ +..|+++++.+.  .+..++.+.|.++ ||++.++.       ..+.+|++++.. +++++++++++|.++++++.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~  405 (407)
T 2zc0_A          327 EFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEKF  405 (407)
T ss_dssp             CBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHHC
T ss_pred             EEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHh
Confidence            332 345778888884  3577899999998 99998752       136899998876 89999999999999998764

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.96  E-value=1.3e-34  Score=289.36  Aligned_cols=338  Identities=12%  Similarity=0.068  Sum_probs=235.0

Q ss_pred             eEEEeecccEEEecCCC--EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC----C
Q 013008           82 VVLASGKGCKLYDAEGR--EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----A  155 (451)
Q Consensus        82 ~~~~~~~G~~l~d~~G~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~  155 (451)
                      ++..+++|+++||.+|+  ++|||..+.+  .++ .+|++.+++.+++++..+.+.....+.+.++++++.+.++    .
T Consensus        13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~   89 (392)
T 3b1d_A           13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFDK   89 (392)
Confidence            45567999999999999  9999988865  455 6899999999988653222211122334555555554444    6


Q ss_pred             CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCC
Q 013008          156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGN  234 (451)
Q Consensus       156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d  234 (451)
                      ++|++++||++|++.+++++..           ++++|++.+|+||++.......+.... .   .+..+. ..+.  .|
T Consensus        90 ~~v~~~~g~~~a~~~~~~~~~~-----------~gd~vl~~~p~~~~~~~~~~~~g~~~~-~---~~~~~~~g~~~--~d  152 (392)
T 3b1d_A           90 EDIVFVEGVVPAISIAIQAFTK-----------EGEAVLINSPVYPPFARSVRLNNRKLV-S---NSLKEENGLFQ--ID  152 (392)
Confidence            7899999999999999997752           578999999999998754433222111 1   111000 0000  27


Q ss_pred             HHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc----cccccc--cCCCc
Q 013008          235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----LWAHEH--YGIFP  308 (451)
Q Consensus       235 ~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~----~~~~~~--~~~~p  308 (451)
                      +++|++.++..++++|+++..++++|. +++.+++++|+++|++||++||+||+|++|.+.|.    ......  .+..+
T Consensus       153 ~~~l~~~l~~~~~~~v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i  231 (392)
T 3b1d_A          153 FEQLENDIVENDVKLYLLCNPHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFAL  231 (392)
Confidence            888988887445677777666666665 57888999999999999999999999999877663    222222  34557


Q ss_pred             ceeeeccccc-CCcccccccccH-HHHhhccCCCccCCC-CCcHHHHHHHHHHHHHhcChHHHHH--------------H
Q 013008          309 DIMTLAKPLA-GGLPIGAALVTE-KVASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLAS--------------K  371 (451)
Q Consensus       309 di~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~--------------~  371 (451)
                      ++.++||+++ +|+|+||+++++ ++++.+.......++ +.|+++++++.++|+..  ++++++              .
T Consensus       232 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~  309 (392)
T 3b1d_A          232 VLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLEENIQFAVEY  309 (392)
Confidence            7889999998 789999999875 588888755444444 46899999999888742  222222              2


Q ss_pred             HhC-CCCcceecccceeE-EEEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          372 LAR-NPHVKDVRGLGLII-GIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       372 ~~~-~~~~~~v~g~G~~~-~~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      +++ +|.+..+++.|.++ |+++.   ....++++.|+ ++||++.|+..     .+++|++  +..+++++++++++|.
T Consensus       310 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i~~~l~~l~  387 (392)
T 3b1d_A          310 FAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAPKSLVEEICKRIV  387 (392)
Confidence            222 44444455665554 56763   24567888897 78999987531     2467775  5557899999999999


Q ss_pred             HHHH
Q 013008          441 KTLP  444 (451)
Q Consensus       441 ~~l~  444 (451)
                      ++++
T Consensus       388 ~~l~  391 (392)
T 3b1d_A          388 CCLP  391 (392)
Confidence            8875

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.98  E-value=4.5e-31  Score=259.56  Aligned_cols=316  Identities=15%  Similarity=0.105  Sum_probs=234.1

Q ss_pred             ecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCH
Q 013008           87 GKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTG  164 (451)
Q Consensus        87 ~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG  164 (451)
                      .+|.++++.+|+++|||.+|..  .++ .+|++++++.+++++.    ..++.....+++++++++++  .+++++++||
T Consensus         5 ~~~~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~   77 (354)
T 3ly1_A            5 PESAAFTAPSTDNPIRINFNEN--PLG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS   77 (354)
T ss_dssp             ----CCCCCCSSSCEECSSCCC--SSC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred             cccccccCCCCCceEEccCCCC--CCC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence            4567778899999999999864  454 7899999999988752    22344557899999999987  6799999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHH
Q 013008          165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATR  239 (451)
Q Consensus       165 ~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le  239 (451)
                      ++|+..+++.+.           .++++|++.+|+|+++.......+.             .+..++.+     |+++|+
T Consensus        78 ~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~d~~~l~  133 (354)
T 3ly1_A           78 SEGIRAAIEAYA-----------SLEAQLVIPELTYGDGEHFAKIAGM-------------KVTKVKMLDNWAFDIEGLK  133 (354)
T ss_dssp             HHHHHHHHHHHC-----------CTTCEEEEESSSCTHHHHHHHHTTC-------------EEEEECCCTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHh-----------CCCCeEEECCCCchHHHHHHHHcCC-------------EEEEecCCCCCCCCHHHHH
Confidence            999999999764           1588999999999987654433221             12223333     899999


Q ss_pred             HhcCC-CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-c---ccc-CCCcceeee
Q 013008          240 KLIQP-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-H---EHY-GIFPDIMTL  313 (451)
Q Consensus       240 ~~l~~-~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~---~~~-~~~pdi~t~  313 (451)
                      +.++. .++++|+++.+++++|. ..+.+.+++|+++| +||+++|+||+|+++.+.+.... .   ..+ +....+.++
T Consensus       134 ~~l~~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  211 (354)
T 3ly1_A          134 AAVAAYSGPSIVYLVNPNNPTGT-ITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTF  211 (354)
T ss_dssp             HHHHTCSSCEEEEEESSCTTTCC-CCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEES
T ss_pred             HHhccCCCCCEEEEeCCCCCcCC-CcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeC
Confidence            99973 46777777666666665 56778888888888 79999999999998876654211 1   222 444556689


Q ss_pred             ccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCc
Q 013008          314 AKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHV  378 (451)
Q Consensus       314 sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~  378 (451)
                      ||.++ +|+++|++++++++++.+.....  .++.|+++++++.++|+..   +++++              .++++ .+
T Consensus       212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~l~~~l~~~-~~  285 (354)
T 3ly1_A          212 SKIHAMAGMRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDS---AFITYSKKSNDVSRQILLKALEDL-KL  285 (354)
T ss_dssp             SSTTCCGGGCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             hhhccChhhhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            99998 78999999999999998875432  3788999999998887632   22221              12222 23


Q ss_pred             ceecccceeEEEEecCChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          379 KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       379 ~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..+++.|.++++.+..+..++.+.|.++||++. +.   ..+.+|+++.   +++++++++++|++++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          286 PYLPSEGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             CBCCCCSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             eECCCCceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence            345677889888886577889999999999987 32   2378999754   899999999999998864

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.98  E-value=9.7e-32  Score=268.78  Aligned_cols=323  Identities=13%  Similarity=0.082  Sum_probs=230.7

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~  173 (451)
                      ++++|||.++.... .||.+|++.+++.+++++.......+.. ....++++.++++++  .++|++++||++|++.+++
T Consensus        31 ~~~~i~l~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~  109 (397)
T 2zyj_A           31 RPGILSFAGGLPAP-ELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK  109 (397)
T ss_dssp             STTCEEESSCCCCG-GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCceecCCCCCCc-hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence            45689999887643 5788999999999988763211111222 225677777777776  5799999999999999999


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcCCCCeEE
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQPGKTAA  249 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~aa  249 (451)
                      ++.           .++++|++.+|+||++.......+ ..            +..+|.    .|+++|++++++.++++
T Consensus       110 ~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~g-~~------------~~~~~~~~~~~d~~~l~~~l~~~~~~~  165 (397)
T 2zyj_A          110 VFL-----------DEGSPVLLEAPSYMGAIQAFRLQG-PR------------FLTVPAGEEGPDLDALEEVLKRERPRF  165 (397)
T ss_dssp             HHC-----------CTTCEEEEEESCCHHHHHHHHTTC-CE------------EEEEEEETTEECHHHHHHHHHHCCCSC
T ss_pred             HhC-----------CCCCEEEEeCCCcHHHHHHHHHcC-CE------------EEecCcCCCCCCHHHHHHHHhhcCCeE
Confidence            764           157899999999999875543322 11            111221    28999999986435666


Q ss_pred             EE-EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc------CCCcceeeecccccCCc
Q 013008          250 VF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY------GIFPDIMTLAKPLAGGL  321 (451)
Q Consensus       250 vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~------~~~pdi~t~sK~lg~G~  321 (451)
                      |+ ++.+++++|. .++.+++++|+++|++||+++|+||+|+++.+.|.. .....+      +....+.++||++++|+
T Consensus       166 v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~  244 (397)
T 2zyj_A          166 LYLIPSFQNPTGG-LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL  244 (397)
T ss_dssp             EEECCBSCTTTCC-BCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG
T ss_pred             EEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc
Confidence            64 4444555565 578999999999999999999999999988766642 222222      22344668999999889


Q ss_pred             ccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCCC-Cccee-ccc
Q 013008          322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARNP-HVKDV-RGL  384 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~~-~~~~v-~g~  384 (451)
                      |+|++++++++++.+.......+++.|+++++++.++|+.... ++.++               +.+.+| .+..+ +..
T Consensus       245 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~  323 (397)
T 2zyj_A          245 RVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG  323 (397)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB
T ss_pred             eeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc
Confidence            9999999999998886544455677799999998888863210 11111               222244 34433 345


Q ss_pred             ceeEEEEec--CChHHHHHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          385 GLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       385 G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      |+++++.+.  .+..++.+.|.++||++.++.       ..+.+|++++.. +++++++++++|.++++++.
T Consensus       324 g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~  394 (397)
T 2zyj_A          324 GMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGLL  394 (397)
T ss_dssp             SSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            788888884  357789999999999998752       136899998864 89999999999999998764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.98  E-value=6.8e-31  Score=265.35  Aligned_cols=323  Identities=16%  Similarity=0.102  Sum_probs=227.9

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhc---ccccCC--CCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVL---THVSNM--YYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN  168 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~--~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~  168 (451)
                      ++|||.++.+  .+| .+|.+.+++.+++++.   .+.+..  +..+.+.++++++.+.++    .+ +|++++||++|+
T Consensus        38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~  114 (429)
T 1yiz_A           38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL  114 (429)
T ss_dssp             CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence            5789988876  567 7899999999998762   111111  122335566666655444    56 999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-----eeEeeC-CCHHHHHHhc
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-----VNFVEY-GNIEATRKLI  242 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~d~~~le~~l  242 (451)
                      +.+++++.           .++++|++.+|+||++....... +.....   .+..++     +....+ .|+++|++.+
T Consensus       115 ~~~~~~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~~~~~~d~~~l~~~l  179 (429)
T 1yiz_A          115 YATIQGHV-----------DEGDEVIIIEPFFDCYEPMVKAA-GGIPRF---IPLKPNKTGGTISSADWVLDNNELEALF  179 (429)
T ss_dssp             HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHT-TCEEEE---EECBCCCSSSSEEGGGCBCCHHHHHHHC
T ss_pred             HHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHc-CCEEEE---EeCCcccccccccccCcccCHHHHHHHh
Confidence            99999764           15789999999999987554332 211111   111111     000011 3899999999


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccc----ccCCCcceeeecccc
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHE----HYGIFPDIMTLAKPL  317 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~----~~~~~pdi~t~sK~l  317 (451)
                      ++ ++++|+++++++++|. .++++++++|+++|++||++||+||+|++|++.|.. ....    ..+..+++.++||.+
T Consensus       180 ~~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~  257 (429)
T 1yiz_A          180 NE-KTKMIIINTPHNPLGK-VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF  257 (429)
T ss_dssp             CT-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHH
T ss_pred             cc-CceEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhcc
Confidence            64 6788888877777776 468899999999999999999999999998776642 1111    234556677999999


Q ss_pred             c-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----hcChHHHHH--------------HHhCCCC
Q 013008          318 A-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLAS--------------KLARNPH  377 (451)
Q Consensus       318 g-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~--------------~~~~~~~  377 (451)
                      + +|+|+|++++++++++.+....+..+++.++++++++.++|+.     ...++++++              .+++++ 
T Consensus       258 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-  336 (429)
T 1yiz_A          258 SLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG-  336 (429)
T ss_dssp             TCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             CCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            8 6899999999999998886555566888999999999999987     422333222              122222 


Q ss_pred             cceecc-cceeEEEEecC--------------ChHHHHHHHH-HCCceeeecC----------CCCEEEEeCCCCCCHHH
Q 013008          378 VKDVRG-LGLIIGIEFDV--------------SATPVVDACR-DSGLLVLTAG----------KGNVVRLVPPLIISEQE  431 (451)
Q Consensus       378 ~~~v~g-~G~~~~~~~~~--------------~~~~~~~~l~-~~Gv~~~~~~----------~~~~iri~~~~~~t~e~  431 (451)
                      +..+.+ .|+++++++..              ...++++.|+ ++||++.|+.          ..+++|++++  .++++
T Consensus       337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~  414 (429)
T 1yiz_A          337 MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDEN  414 (429)
T ss_dssp             CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHH
T ss_pred             CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHH
Confidence            222233 47788888842              2457888887 7899998752          0368999877  49999


Q ss_pred             HHHHHHHHHHHHH
Q 013008          432 LDQAVEILCKTLP  444 (451)
Q Consensus       432 i~~~l~~l~~~l~  444 (451)
                      |++++++|+++++
T Consensus       415 i~~~l~~l~~~l~  427 (429)
T 1yiz_A          415 LQKAAEILRKWKG  427 (429)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.98  E-value=1.7e-31  Score=269.70  Aligned_cols=325  Identities=12%  Similarity=0.088  Sum_probs=230.1

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc---cccC--CCCCHHHHHHHHHHhhccC-----CCeEEecCCHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSN--MYYSIPQIELAKRLVACSF-----ADRVFFSNTGTE  166 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~e  166 (451)
                      ++++|||.+|.+.. .|+.+|++.+++.+++++..   ..+.  ....+.+.++++++.+.++     .++|++++||++
T Consensus        42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~  120 (425)
T 1vp4_A           42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ  120 (425)
T ss_dssp             STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred             CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence            46789999987643 58899999999999987631   1111  1122335666666654424     468999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhc
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLI  242 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l  242 (451)
                      |+..+++++.           .++++|++.+|+||++.......+. .            +..+|.    .|+++|++++
T Consensus       121 al~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~-~------------~~~v~~~~~~~d~~~l~~~l  176 (425)
T 1vp4_A          121 ALDLIGKLFL-----------DDESYCVLDDPAYLGAINAFRQYLA-N------------FVVVPLEDDGMDLNVLERKL  176 (425)
T ss_dssp             HHHHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTTTC-E------------EEEEEEETTEECHHHHHHHH
T ss_pred             HHHHHHHHhC-----------CCCCEEEEeCCCcHHHHHHHHHcCC-E------------EEEeccCCCCCCHHHHHHHH
Confidence            9999999664           1578999999999998755433221 1            111221    2899999988


Q ss_pred             CC-------CCeEEEEEc-cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc---CCCcce
Q 013008          243 QP-------GKTAAVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY---GIFPDI  310 (451)
Q Consensus       243 ~~-------~~~aavi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~---~~~pdi  310 (451)
                      ++       .++++|++. ..++++|. +++.+++++|+++|++||++||+||+|+++.+.|.. .....+   +....+
T Consensus       177 ~~~~~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~  255 (425)
T 1vp4_A          177 SEFDKNGKIKQVKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLL  255 (425)
T ss_dssp             HHHHHTTCGGGEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEE
T ss_pred             HhhhhcccCCCceEEEECCCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEE
Confidence            64       267777544 34455554 578999999999999999999999999988666642 222222   223445


Q ss_pred             eeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCC
Q 013008          311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARN  375 (451)
Q Consensus       311 ~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~  375 (451)
                      .++||.+++|+|+|++++++++++.+.......+++.|+++++++.++|+....+++.++               +.+..
T Consensus       256 ~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  335 (425)
T 1vp4_A          256 NTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF  335 (425)
T ss_dssp             EESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             eccccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            689999998899999999999998886544455677899999999999986311111111               22223


Q ss_pred             C---Cccee-cccceeEEEEec--CChHHHHHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          376 P---HVKDV-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       376 ~---~~~~v-~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      |   .+..+ +..|+++++.+.  .+..++++.|+++||++.|+.       ..+.+|++++.. +++++++++++|+++
T Consensus       336 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~  414 (425)
T 1vp4_A          336 SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREV  414 (425)
T ss_dssp             TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred             CCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHH
Confidence            3   24333 345778888884  246678999999999998752       136899998764 899999999999999


Q ss_pred             HHHHhh
Q 013008          443 LPVLDS  448 (451)
Q Consensus       443 l~~~~~  448 (451)
                      ++++..
T Consensus       415 l~~~~~  420 (425)
T 1vp4_A          415 VLEYGK  420 (425)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            987654

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.98  E-value=5.2e-31  Score=260.50  Aligned_cols=309  Identities=15%  Similarity=0.105  Sum_probs=232.6

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al~  173 (451)
                      .+.+|||.++..  .++ .+|+|.+++.+++.+...  ..++.....+++++++++++.   +++++++||++|+..+++
T Consensus        29 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~  103 (367)
T 3euc_A           29 SHGLVKLDAMEN--PYR-LPPALRSELAARLGEVAL--NRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL  103 (367)
T ss_dssp             CTTCEECCSSCC--CCC-CCHHHHHHHHHHHHHHHT--TCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred             CCCeeEccCCCC--CCC-CCHHHHHHHHHHhhhhhh--hcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence            367899998873  454 789999999999875321  223333467889999998875   799999999999999999


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeE
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTA  248 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a  248 (451)
                      .+.           .++++|++.+|+|+++.......+..             +..++.     .|+++|++++++.+++
T Consensus       104 ~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~l~~~~~~  159 (367)
T 3euc_A          104 AAA-----------RPGAKVMAPVPGFVMYAMSAQFAGLE-------------FVGVPLRADFTLDRGAMLAAMAEHQPA  159 (367)
T ss_dssp             HTC-----------CTTCEEEEEESCSCCSCHHHHTTTCE-------------EEEEECCTTSCCCHHHHHHHHHHHCCS
T ss_pred             HHc-----------CCCCEEEEcCCCHHHHHHHHHHcCCe-------------EEEecCCCCCCCCHHHHHHHhhccCCC
Confidence            664           15889999999999987554332211             122221     2899999999753566


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHh--CCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAA  326 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v  326 (451)
                      +|+++.+++++|. .++.+.+++|+++|++|  |+++|+||+|++|+..+........+..+++.++||...+|+++|++
T Consensus       160 ~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~  238 (367)
T 3euc_A          160 IVYLAYPNNPTGN-LFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYV  238 (367)
T ss_dssp             EEEEESSCTTTCC-CCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEE
T ss_pred             EEEEcCCCCCCCC-CCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceee
Confidence            7777766666675 56888899999999999  99999999999886544433444455567777999993358999999


Q ss_pred             cccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEe
Q 013008          327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEF  392 (451)
Q Consensus       327 ~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~  392 (451)
                      ++++++++.+...  ..+++.|+++++++.++|+.   .+++++              .++++|.+...++.|.++++.+
T Consensus       239 ~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~  313 (367)
T 3euc_A          239 AGDPQWLEQLDKV--RPPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLARV  313 (367)
T ss_dssp             EECHHHHHHHGGG--CCSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEEC
T ss_pred             eeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEEC
Confidence            9999999888643  34677899999999998874   222211              3345665655677788888888


Q ss_pred             cCChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          393 DVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       393 ~~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      . +..++.+.|.++||++.++..     .+.+|++++   +++++++++++|+++++
T Consensus       314 ~-~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          314 P-DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             S-CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             C-CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence            6 678899999999999987642     368999855   89999999999998763

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.98  E-value=7.9e-31  Score=261.57  Aligned_cols=316  Identities=13%  Similarity=0.075  Sum_probs=221.8

Q ss_pred             cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhcc----CCCeEEecCCHHHHH
Q 013008           95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACS----FADRVFFSNTGTEAN  168 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~----~~e~v~~~~sG~eA~  168 (451)
                      .+|+++|||.+|..  .++ .+|+|.+++.+++++....+.  .+..+.+.++++++.+.+    ..++|++|+||++|+
T Consensus        28 ~~g~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al  104 (391)
T 3h14_A           28 EAGRRIIHMEVGQP--GTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF  104 (391)
T ss_dssp             HTTCCCEECCCSSC--SSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred             hcCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence            36899999999876  344 388999999998875322111  112233555666655443    367999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-------CHHHHHHh
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-------NIEATRKL  241 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~  241 (451)
                      ..+++.+.           .++++|++.+|+|+++.......+.             .+..++.+       |+++|++.
T Consensus       105 ~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~l~~~  160 (391)
T 3h14_A          105 LLAFTALF-----------DSGDRVGIGAPGYPSYRQILRALGL-------------VPVDLPTAPENRLQPVPADFAGL  160 (391)
T ss_dssp             HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECCGGGTTSCCHHHHTTS
T ss_pred             HHHHHHhc-----------CCCCEEEEcCCCCccHHHHHHHcCC-------------EEEEeecCcccCCCCCHHHHHhc
Confidence            99999764           1689999999999987654433221             12222221       78888776


Q ss_pred             cCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCCCcceeeeccccc-C
Q 013008          242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-G  319 (451)
Q Consensus       242 l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pdi~t~sK~lg-~  319 (451)
                          ++++|+++.+++++|. .++.+.+++|+++|++||+++|+||+|++|.+.|.... ....+....+.++||.+| +
T Consensus       161 ----~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~  235 (391)
T 3h14_A          161 ----DLAGLMVASPANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMT  235 (391)
T ss_dssp             ----CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCT
T ss_pred             ----CCeEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCc
Confidence                4566666666666665 56888899999999999999999999999877664322 222233344558999998 7


Q ss_pred             CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-
Q 013008          320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-  384 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-  384 (451)
                      |+|+||+++++++++.+.......+++.++++++++.++|+   ..+++++              .+++++....+++. 
T Consensus       236 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  312 (391)
T 3h14_A          236 GWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDG  312 (391)
T ss_dssp             TSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCB
T ss_pred             cceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCe
Confidence            99999999999998888655556778889999999988876   2222222              22333433223444 


Q ss_pred             ceeEEEEec---CChHHHHHHHHHC-CceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          385 GLIIGIEFD---VSATPVVDACRDS-GLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       385 G~~~~~~~~---~~~~~~~~~l~~~-Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      |+++++.+.   .+..++.+.|+++ ||.+.|+..      .+.+|++++.  +++++++++++|.+++++..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~  383 (391)
T 3h14_A          313 AFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARG  383 (391)
T ss_dssp             TTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC-
T ss_pred             eEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence            467777773   3577899998876 999987531      3589997665  88999999999999998654

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.97  E-value=3e-30  Score=257.00  Aligned_cols=324  Identities=15%  Similarity=0.087  Sum_probs=230.0

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~  169 (451)
                      +|+++|||.+|.+  .+| .+|.+.+++.+++++....+..  +..+.+.++++++.+.++    .+++++++||++|+.
T Consensus        28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  104 (388)
T 1j32_A           28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF  104 (388)
T ss_dssp             TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence            6788999999876  466 6899999999988653221111  123335666666665443    578999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHhcCCCCeE
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTA  248 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a  248 (451)
                      .+++++.           .++++|++.+|+||++....... +.....   .+..+..   .+ .|+++|++++++ +++
T Consensus       105 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~---v~~~~~~---~~~~d~~~l~~~l~~-~~~  165 (388)
T 1j32_A          105 NLMLAMI-----------EPGDEVIIPAPFWVSYPEMVKLA-EGTPVI---LPTTVET---QFKVSPEQIRQAITP-KTK  165 (388)
T ss_dssp             HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHT-TCEEEE---ECCCGGG---TTCCCHHHHHHHCCT-TEE
T ss_pred             HHHHHhc-----------CCCCEEEEcCCCChhHHHHHHHc-CCEEEE---ecCCccc---CCCCCHHHHHHhcCc-Cce
Confidence            9999764           15889999999999876543322 211110   1111100   01 279999999975 577


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc----cccc--ccCCCcceeeeccccc-CCc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHE--HYGIFPDIMTLAKPLA-GGL  321 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~--~~~~~pdi~t~sK~lg-~G~  321 (451)
                      +|+++++++++|.+ ++++++++|+++|++||+++|+||+|+++.+.|..    ....  .++..+++.++||.++ +|+
T Consensus       166 ~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~  244 (388)
T 1j32_A          166 LLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW  244 (388)
T ss_dssp             EEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred             EEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence            77777777777764 67899999999999999999999999988665532    1111  1345567779999998 689


Q ss_pred             ccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ce
Q 013008          322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GL  386 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~  386 (451)
                      |+|++++++++++.+.......+++.++++++++.++|+..  .++.++              .++++|.+..+.+. |+
T Consensus       245 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  322 (388)
T 1j32_A          245 RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF  322 (388)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTT
T ss_pred             ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeE
Confidence            99999999999888765545667888999999999888742  222111              33445544444444 45


Q ss_pred             eEEEEec---CChHHHHHHHHH-CCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          387 IIGIEFD---VSATPVVDACRD-SGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       387 ~~~~~~~---~~~~~~~~~l~~-~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++++.+.   .+..++.+.|++ +||.+.++.   ..+.+|++++  ++++++++++++|.++++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          323 YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence            5566553   356789999986 799998863   1367999875  69999999999999998765

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.97  E-value=4.4e-31  Score=263.67  Aligned_cols=335  Identities=16%  Similarity=0.047  Sum_probs=237.1

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHhhccC---
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSF---  154 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~---  154 (451)
                      +.|+....+.+.+++|.+|+++|||.+|..  .++ .+|.|.+++.++++....+... +..+.+.++++++.+.++   
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~   87 (396)
T 3jtx_A           11 PYPFARLHEAMQGISAPEGMEAVPLHIGEP--KHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLT   87 (396)
T ss_dssp             SCHHHHHHHHTTTCCCCTTCCCEECSCCSC--CSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCC
T ss_pred             CChHHHHHHHHHhhhhccCCCeEEeCCcCC--CCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence            444444467777788899999999999875  454 6899999999988653322221 234457788888876654   


Q ss_pred             --CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-----ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC-C
Q 013008          155 --AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-----TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-P  225 (451)
Q Consensus       155 --~e-~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~-----~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~  225 (451)
                        .+ +|++++||++|+..+++++..           ++     +.|++.+|+||++.......+.....    .+.. .
T Consensus        88 ~~~~~~i~~t~g~~~al~~~~~~~~~-----------~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~----v~~~~~  152 (396)
T 3jtx_A           88 VDADNEILPVLGSREALFSFVQTVLN-----------PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHF----ANCPAP  152 (396)
T ss_dssp             CCTTTSEEEESSHHHHHHHHHHHHCC-----------C---CCCCEEEEEESCCHHHHHHHHHTTCEEEE----EECCTT
T ss_pred             CCCCCeEEEcCCcHHHHHHHHHHHhC-----------CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEE----eecCCC
Confidence              56 999999999999999997752           33     79999999999887654333321111    0110 1


Q ss_pred             CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc-cccccc--
Q 013008          226 GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-YLWAHE--  302 (451)
Q Consensus       226 ~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~~~~--  302 (451)
                      +..    .|+++|++++.+ ++++|+++..++++|. +++.+.+++|+++|++||+++|+||+|+++.+.| ......  
T Consensus       153 g~~----~d~~~l~~~~~~-~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~  226 (396)
T 3jtx_A          153 SFN----PDWRSISEEVWK-RTKLVFVCSPNNPSGS-VLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQA  226 (396)
T ss_dssp             TCC----CCGGGSCHHHHH-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHH
T ss_pred             CCc----cCHHHHHHhhcc-CcEEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhh
Confidence            111    167788887764 5666666555666665 5688889999999999999999999999987776 332221  


Q ss_pred             ------ccCCCcceeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----
Q 013008          303 ------HYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----  370 (451)
Q Consensus       303 ------~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----  370 (451)
                            ..+..+++.++||+++ +|+|+||+++++++++.+.......+++.|+++++++.++|+.   ++++++     
T Consensus       227 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~  303 (396)
T 3jtx_A          227 AAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLY  303 (396)
T ss_dssp             HHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHH
T ss_pred             hhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence                  1455677789999987 5899999999999999886555556788899999999998873   222222     


Q ss_pred             ---------HHhCCCCcceecccceeEEEEec-CChHHHHHHHHH-CCceeeecC-----------CCCEEEEeCCCCCC
Q 013008          371 ---------KLARNPHVKDVRGLGLIIGIEFD-VSATPVVDACRD-SGLLVLTAG-----------KGNVVRLVPPLIIS  428 (451)
Q Consensus       371 ---------~~~~~~~~~~v~g~G~~~~~~~~-~~~~~~~~~l~~-~Gv~~~~~~-----------~~~~iri~~~~~~t  428 (451)
                               .++.+..+. ....|+++++.+. ....++++.|++ +||.+.|+.           ..+.+|++++.  +
T Consensus       304 ~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~  380 (396)
T 3jtx_A          304 QEKFERVIPILQQVFDVK-LPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--D  380 (396)
T ss_dssp             HHHHHHHHHHHTTTSCCC-CCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--C
T ss_pred             HHHHHHHHHHHHhcCCcc-CCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--C
Confidence                     122221111 2334778888885 367788998865 699998752           13689997654  9


Q ss_pred             HHHHHHHHHHHHHHH
Q 013008          429 EQELDQAVEILCKTL  443 (451)
Q Consensus       429 ~e~i~~~l~~l~~~l  443 (451)
                      ++++++++++|.+++
T Consensus       381 ~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          381 VATCVKAAEDIVSLY  395 (396)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998865

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.97  E-value=2.6e-30  Score=259.78  Aligned_cols=327  Identities=13%  Similarity=0.091  Sum_probs=222.0

Q ss_pred             cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----C-CeEEecCCHHH
Q 013008           95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTE  166 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~-e~v~~~~sG~e  166 (451)
                      .+|+++|||.++..  .+| .+|.+.+++.+++++.. +.+  .....+.+..+++++.+.++    . ++|++++||++
T Consensus        34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~  110 (412)
T 2x5d_A           34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE  110 (412)
T ss_dssp             HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred             hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence            46889999999875  566 78999999999886531 111  11122234455555544335    3 69999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK  246 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  246 (451)
                      |+..+++++.   +        ++++|++.+|+||++.......+.... .   .+..+...+.  .|+++|++++.+ +
T Consensus       111 a~~~~~~~~~---~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~---~~~~~~~~~~--~d~~~l~~~i~~-~  172 (412)
T 2x5d_A          111 GLAHLMLATL---D--------HGDTILVPNPSYPIHIYGAVIAGAQVR-S---VPLVPGIDFF--NELERAIRESIP-K  172 (412)
T ss_dssp             HHHHHHHHHC---C--------TTCEEEEEESCCHHHHHHHHHHTCEEE-E---EECSTTSCHH--HHHHHHHHTEES-C
T ss_pred             HHHHHHHHhC---C--------CCCEEEEcCCCchhHHHHHHHcCCEEE-E---eecCCccCCC--CCHHHHHHhccc-C
Confidence            9999999764   1        578999999999998765443322111 0   1111100000  167899998874 4


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cccccc----cCCCcceeeeccccc-CC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEH----YGIFPDIMTLAKPLA-GG  320 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~----~~~~pdi~t~sK~lg-~G  320 (451)
                      +++|++...++++|. +++.+++++|+++|++||++||+||+|+++.+.|. ......    .+..+.+.++||.++ +|
T Consensus       173 ~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  251 (412)
T 2x5d_A          173 PRMMILGFPSNPTAQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG  251 (412)
T ss_dssp             CSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred             ceEEEECCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence            555555433455564 56889999999999999999999999998866553 111111    234455668999998 78


Q ss_pred             cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-c
Q 013008          321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-G  385 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G  385 (451)
                      +|+|++++++++++.+.......+++.|+++++++.++|+..+  ++.++              .++++ .+..+++. |
T Consensus       252 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g  328 (412)
T 2x5d_A          252 WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQ--QCVRDIARQYQQRRDVLVKGLREA-GWMVENPKAS  328 (412)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCS--HHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBS
T ss_pred             cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCee
Confidence            9999999999999888654445578889999999999998432  22221              12222 22223444 6


Q ss_pred             eeEEEEecC-----ChHHHHHHHHH-CCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          386 LIIGIEFDV-----SATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       386 ~~~~~~~~~-----~~~~~~~~l~~-~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +++++.+..     +..++++.|++ +||++.++..     .+.+|++++.  +++++++++++|.++++++..
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~  400 (412)
T 2x5d_A          329 MYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRADGL  400 (412)
T ss_dssp             SEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCC
Confidence            678888842     56789999876 6999987631     3689998775  899999999999999987653

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.97  E-value=3e-30  Score=260.70  Aligned_cols=323  Identities=15%  Similarity=0.128  Sum_probs=230.0

Q ss_pred             ecCCCEEEeeccCcccc-cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-------CCeEEecCCHH
Q 013008           94 DAEGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-------ADRVFFSNTGT  165 (451)
Q Consensus        94 d~~G~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~e~v~~~~sG~  165 (451)
                      +.+|+++|||..|.+.. .-...+|.|++|+.+++++.... .+.+.....++.+.++++++       .++|++++||+
T Consensus        50 ~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~-~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t  128 (427)
T 3dyd_A           50 PNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN-GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCS  128 (427)
T ss_dssp             CCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS-SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHH
T ss_pred             ccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC-CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcH
Confidence            45688999999998532 11247899999999998763211 11122224556666666554       67999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-------CCHHHH
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------GNIEAT  238 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l  238 (451)
                      +|++.+++++.           .++++|++.+|+|+++.......+..             +..+++       -|+++|
T Consensus       129 ~al~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l  184 (427)
T 3dyd_A          129 QAIDLCLAVLA-----------NPGQNILVPRPGFSLYKTLAESMGIE-------------VKLYNLLPEKSWEIDLKQL  184 (427)
T ss_dssp             HHHHHHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTCE-------------EEEEEEEGGGTTEECHHHH
T ss_pred             HHHHHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHcCCE-------------EEEEecccccCCCCCHHHH
Confidence            99999999775           26889999999999876554333221             111111       189999


Q ss_pred             HHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccCCCccee---eec
Q 013008          239 RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPDIM---TLA  314 (451)
Q Consensus       239 e~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~~pdi~---t~s  314 (451)
                      ++.++++ +++|+++..++++|. .++++++++|+++|++||+++|+||+|++|++.|..+ ....++..++++   ++|
T Consensus       185 ~~~l~~~-~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~s  262 (427)
T 3dyd_A          185 EYLIDEK-TACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLA  262 (427)
T ss_dssp             HSSCCTT-EEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEEST
T ss_pred             HHHhccC-CCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeecc
Confidence            9999764 555555544666665 6789999999999999999999999999998877533 344455555555   899


Q ss_pred             cccc-CCccccccccc-------HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HH
Q 013008          315 KPLA-GGLPIGAALVT-------EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KL  372 (451)
Q Consensus       315 K~lg-~G~~iG~v~~~-------~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~  372 (451)
                      |.++ +|+|+||++++       +++++.+.... ..+++.++++++++.++|+... .+++++              .+
T Consensus       263 K~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~a~~~~L~~~~-~~~~~~~~~~~~~~~~~l~~~L  340 (427)
T 3dyd_A          263 KRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLS-QRILGPCTIVQGALKSILCRTP-GEFYHNTLSFLKSNADLCYGAL  340 (427)
T ss_dssp             TTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHH-HHHCCSCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcCcceEEEEecCcchhhHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            9986 58999999987       46776664322 2367889999999999998532 222211              23


Q ss_pred             hCCCCccee-cccceeEEEEec-------CChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          373 ARNPHVKDV-RGLGLIIGIEFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       373 ~~~~~~~~v-~g~G~~~~~~~~-------~~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      +++|.+..+ +..|+++++.++       ....++++.|+ ++||++.|+.   ..+++|+++  .+++++|++++++|.
T Consensus       341 ~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~  418 (427)
T 3dyd_A          341 AAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLEACSRIQ  418 (427)
T ss_dssp             HHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHHHHHHHH
T ss_pred             hcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHHHHHHHH
Confidence            445655544 344677777774       34678888886 7899999863   247899975  479999999999999


Q ss_pred             HHHHHHh
Q 013008          441 KTLPVLD  447 (451)
Q Consensus       441 ~~l~~~~  447 (451)
                      +++++++
T Consensus       419 ~~l~~~~  425 (427)
T 3dyd_A          419 EFCEQHY  425 (427)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998764

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.3e-31  Score=266.37  Aligned_cols=323  Identities=18%  Similarity=0.131  Sum_probs=227.3

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccC--CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      .|+++|||..|.+  .++ .+|.+.+++.+++++.. +.+.  .+..+.+.++++++.+.++    .++|++|+||++|+
T Consensus        55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al  131 (447)
T 3b46_A           55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI  131 (447)
T ss_dssp             TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred             cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence            4668999999875  455 78999999999987521 1111  1123446677777766554    46899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCe-------eEeeC-CCHHHHHH
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV-------NFVEY-GNIEATRK  240 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~d~~~le~  240 (451)
                      +.+++++.           .++++||+.+|+||++.......+.... .   .+..+..       ....+ .|+++|++
T Consensus       132 ~~~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~~~~~~~~~~~~d~~~l~~  196 (447)
T 3b46_A          132 LSCLMGLL-----------NAGDEVIVFEPFFDQYIPNIELCGGKVV-Y---VPINPPKELDQRNTRGEEWTIDFEQFEK  196 (447)
T ss_dssp             HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-E---EEEECCGGGGTSCBCSTTSEECHHHHHT
T ss_pred             HHHHHHHc-----------CCCCEEEEeCCCchhHHHHHHHcCCEEE-E---EeCCCccccccccccccCcccCHHHHHH
Confidence            99999764           2689999999999998765433322111 1   0110100       00001 28999999


Q ss_pred             hcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc---ccc--cccCCCcceeeecc
Q 013008          241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---WAH--EHYGIFPDIMTLAK  315 (451)
Q Consensus       241 ~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~---~~~--~~~~~~pdi~t~sK  315 (451)
                      ++.+ ++++|++++.++++|. +++.+++++|+++|++||++||+||+|+++.+.|..   ...  +.++..+++.++||
T Consensus       197 ~l~~-~~~~v~l~~p~nptG~-~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK  274 (447)
T 3b46_A          197 AITS-KTKAVIINTPHNPIGK-VFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGK  274 (447)
T ss_dssp             TCCT-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHH
T ss_pred             hhcc-CCeEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCch
Confidence            9974 6778887777777775 468999999999999999999999999998766531   112  13466777889999


Q ss_pred             ccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc
Q 013008          316 PLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK  379 (451)
Q Consensus       316 ~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~  379 (451)
                      .++ +|+|+||+++ ++++++.+....+..+++.+++.++++.++|+....++++++              .++.+. +.
T Consensus       275 ~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~  353 (447)
T 3b46_A          275 SFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG-LP  353 (447)
T ss_dssp             HTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT-CC
T ss_pred             hcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCC-Ce
Confidence            998 6999999999 999998886544556788899999999999986522222221              122222 22


Q ss_pred             ee-cccceeEEEEecC-----------------ChHHHHHHHH-HCCceeeecCC----------CCEEEEeCCCCCCHH
Q 013008          380 DV-RGLGLIIGIEFDV-----------------SATPVVDACR-DSGLLVLTAGK----------GNVVRLVPPLIISEQ  430 (451)
Q Consensus       380 ~v-~g~G~~~~~~~~~-----------------~~~~~~~~l~-~~Gv~~~~~~~----------~~~iri~~~~~~t~e  430 (451)
                      .+ +..|+++++++..                 +..++++.|+ ++||++.|+..          .+.+|++++  .++|
T Consensus       354 ~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e  431 (447)
T 3b46_A          354 YTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDA  431 (447)
T ss_dssp             EECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHH
T ss_pred             ecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHH
Confidence            22 3457888888742                 2457888887 58999987630          368999776  4899


Q ss_pred             HHHHHHHHHHH
Q 013008          431 ELDQAVEILCK  441 (451)
Q Consensus       431 ~i~~~l~~l~~  441 (451)
                      +|++++++|.+
T Consensus       432 ~l~~~~~~l~~  442 (447)
T 3b46_A          432 YLENAVERLKL  442 (447)
T ss_dssp             HHHHHHHHGGG
T ss_pred             HHHHHHHHHHH
Confidence            99999999976

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.97  E-value=3.1e-30  Score=254.10  Aligned_cols=324  Identities=15%  Similarity=0.140  Sum_probs=220.5

Q ss_pred             ceEEEeecccEEEe-cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCe
Q 013008           81 PVVLASGKGCKLYD-AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADR  157 (451)
Q Consensus        81 p~~~~~~~G~~l~d-~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~  157 (451)
                      ++.+.+|.+.+.++ .+|+++|||.+|..  +++ .+|++.+++.+++++...    ++.....+++++++++++  .++
T Consensus         8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~   80 (361)
T 3ftb_A            8 GDLMIHGGDIYTEGVFKGRELLDYSSNIN--PLG-IPKSFLNNIDEGIKNLGV----YPDVNYRRLNKSIENYLKLKDIG   80 (361)
T ss_dssp             --------------------CEETTCCCC--TTC-SCHHHHTTHHHHHHGGGS----CCCTTCHHHHHHHHHHHTCCSCE
T ss_pred             CccccCCCCHHHHhhcCCCCEEEecCCCC--CCC-CCHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHhCCCcce
Confidence            34555555555444 48999999999865  455 689999999999876422    233345788888888887  679


Q ss_pred             EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHH
Q 013008          158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA  237 (451)
Q Consensus       158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  237 (451)
                      +++++||++|++.+++++               ++|++.+|+||++.......+.....    .+..++.    .-|+++
T Consensus        81 i~~~~g~t~al~~~~~~~---------------d~vi~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~----~~~~~~  137 (361)
T 3ftb_A           81 IVLGNGASEIIELSISLF---------------EKILIIVPSYAEYEINAKKHGVSVVF----SYLDENM----CIDYED  137 (361)
T ss_dssp             EEEESSHHHHHHHHHTTC---------------SEEEEEESCCTHHHHHHHHTTCEEEE----EECCTTS----CCCHHH
T ss_pred             EEEcCCHHHHHHHHHHHc---------------CcEEEecCChHHHHHHHHHcCCeEEE----eecCccc----CCCHHH
Confidence            999999999999998843               47999999999876554433221110    1111110    116799


Q ss_pred             HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc---eeeec
Q 013008          238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD---IMTLA  314 (451)
Q Consensus       238 le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd---i~t~s  314 (451)
                      |++++++  +++|+++..++++|. +++.+++++|+++|++||+++|+||+|+++.+.+........+..++   +.++|
T Consensus       138 l~~~l~~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  214 (361)
T 3ftb_A          138 IISKIDD--VDSVIIGNPNNPNGG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMT  214 (361)
T ss_dssp             HHHHTTT--CSEEEEETTBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESS
T ss_pred             HHHhccC--CCEEEEeCCCCCCCC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeCh
Confidence            9999976  444444444555554 56888999999999999999999999998866421222222232233   34789


Q ss_pred             cccc-CCccccccc-ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCc
Q 013008          315 KPLA-GGLPIGAAL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHV  378 (451)
Q Consensus       315 K~lg-~G~~iG~v~-~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~  378 (451)
                      |.++ +|+++|+++ +++++++.+...  ..+++.|+++++++.++|+.   .+++++              .++++|.+
T Consensus       215 K~~~~~G~r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~  289 (361)
T 3ftb_A          215 KFFAMPGIRFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEELNKIGFI  289 (361)
T ss_dssp             STTSCGGGCCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHSSSE
T ss_pred             hhcCCCCcceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9998 689999998 899999988754  34678899999999888762   232222              33456666


Q ss_pred             c-eecccceeEEEEecC-ChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          379 K-DVRGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       379 ~-~v~g~G~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      . ..++.|.++++.+.. +..++.+.|.++||.+.++..     .+.+|++++   ++++++++++.|+++.+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          290 KRVFSPHANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             EEEECCSSSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             ceecCCCCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence            6 677889999988853 678899999999999998631     368999865   788888888888877653

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.97  E-value=1e-30  Score=259.19  Aligned_cols=315  Identities=11%  Similarity=-0.008  Sum_probs=224.3

Q ss_pred             cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008           95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE  169 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~  169 (451)
                      .+| ++|||.+|..  .++ .+|.|.+++.+++.....+.. .+..+.+.++++++.+.++    .+++++++||++|+.
T Consensus        21 ~~g-~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~   96 (376)
T 3ezs_A           21 PKK-RGLDLGIGEP--QFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF   96 (376)
T ss_dssp             CSS-CCCBCSSCCC--CSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred             ccC-CEEEeCCCCC--CCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence            367 8999999875  465 689999999988744322211 1223446777777766554    579999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCC--CceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH----HHHHhcC
Q 013008          170 AAIKFARKFQRHSNPDSKEP--ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE----ATRKLIQ  243 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~--~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~le~~l~  243 (451)
                      .+++++..           +  +++|++.+|+||++.......+..             +..++.++-+    +|++.+.
T Consensus        97 ~~~~~~~~-----------~~~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~l~~~~~  152 (376)
T 3ezs_A           97 NFPSFVLF-----------DYQNPTIAYPNPFYQIYEGAAKFIKAK-------------SLLMPLTKENDFTPSLNEKEL  152 (376)
T ss_dssp             HHHHHHTT-----------TCSSCEEEEEESCCTHHHHHHHHTTCE-------------EEEEECCGGGTSCCCCCHHHH
T ss_pred             HHHHHHcC-----------CCCCCEEEEecCCcHhHHHHHHHcCCE-------------EEEcccCCCCCcchhHHhhhc
Confidence            99997652           5  789999999999877554333221             1122221110    3444443


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccc---------ccCCCcceeeec
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE---------HYGIFPDIMTLA  314 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~---------~~~~~pdi~t~s  314 (451)
                      + ++++|+++.+++++|. .++.+++++|+++|++||++||+||+|++|.+.|......         ..+..+.+.++|
T Consensus       153 ~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  230 (376)
T 3ezs_A          153 Q-EVDLVILNSPNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLS  230 (376)
T ss_dssp             H-HCSEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred             c-CCCEEEEcCCCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecch
Confidence            3 3455555444555665 5688899999999999999999999999987766433221         345556677999


Q ss_pred             cccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCCCCcceec
Q 013008          315 KPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARNPHVKDVR  382 (451)
Q Consensus       315 K~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~~~~~~v~  382 (451)
                      |.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+.   .+++++           +.+.+..+. .+
T Consensus       231 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~-~~  306 (376)
T 3ezs_A          231 KRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFKNTL-IY  306 (376)
T ss_dssp             TTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHSTTCC-CC
T ss_pred             hccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhcCCC-CC
Confidence            9997 6899999999999999887655566788999999999999874   222222           222222222 45


Q ss_pred             ccceeEEEEecCChHHHHHHHHH-CCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFDVSATPVVDACRD-SGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       383 g~G~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..|.++++.+. ...++.+.|++ +||++.|+.       ..+.+|++++  .+++++++++++|.+++++.
T Consensus       307 ~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~  375 (376)
T 3ezs_A          307 PYSFYVYLPVQ-NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYRENH  375 (376)
T ss_dssp             SBSSEEEEECS-CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC-
T ss_pred             CcceEEEEECC-CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHhc
Confidence            66888888876 67889999998 899998752       2378999766  49999999999999988643

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.97  E-value=3.4e-30  Score=254.29  Aligned_cols=304  Identities=18%  Similarity=0.166  Sum_probs=224.7

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~  174 (451)
                      ++++|||.+|.+  +++ .+|++.+++.++++..    ..++.....+++++++++++  .+++++++||++|++.++++
T Consensus        31 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~  103 (363)
T 3ffh_A           31 LTKITKLSSNEN--PLG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRV  103 (363)
T ss_dssp             CSCCEECSSCSC--TTC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred             CCceEEccCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHH
Confidence            357899999865  455 7899999998876542    22333446788888988887  67999999999999999997


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEE
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAA  249 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aa  249 (451)
                      +.           .++++|++.+|+|+++.......+.             .+..++.+     |+++|++.+.+ ++++
T Consensus       104 ~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~d~~~l~~~i~~-~~~~  158 (363)
T 3ffh_A          104 LL-----------DTTTNTVMATPTFVQYRQNALIEGA-------------EVREIPLLQDGEHDLEGMLNAIDE-KTTI  158 (363)
T ss_dssp             HC-----------STTCEEEEEESSCHHHHHHHHHHTC-------------EEEEEECCTTSCCCHHHHHHHCCT-TEEE
T ss_pred             Hc-----------cCCCEEEEcCCChHHHHHHHHHcCC-------------EEEEecCCCCCCcCHHHHHHhccc-CCCE
Confidence            64           1588999999999987654433321             12233333     89999999975 5777


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc----eeeeccccc-CCcccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD----IMTLAKPLA-GGLPIG  324 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd----i~t~sK~lg-~G~~iG  324 (451)
                      |+++.+++++|.+ .+.+.+.+|++.|++ |+++|+||+|++|++ |...........+|    +.++||.++ +|+|+|
T Consensus       159 v~~~~p~nptG~~-~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G  235 (363)
T 3ffh_A          159 VWICNPNNPTGNY-IELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVG  235 (363)
T ss_dssp             EEEESSCTTTCCC-CCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCE
T ss_pred             EEEeCCCCCcCCC-cCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhcee
Confidence            7777777777764 577777777777777 999999999998876 54322222211233    568999998 789999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGI  390 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~  390 (451)
                      ++++++++++.+....  .+++.|+++++++.++|+.   .+++++              .+++++.+..+++.|.++++
T Consensus       236 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~  310 (363)
T 3ffh_A          236 YGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKD---QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVLI  310 (363)
T ss_dssp             EEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEEE
T ss_pred             eeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEEE
Confidence            9999999999886543  3788999999999999962   222221              23344455556778889888


Q ss_pred             EecCChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          391 EFDVSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       391 ~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .+..+..++.+.|.++||.+.++..   ++.+|++++   +++++++++++|++++
T Consensus       311 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          311 DLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             ECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             ECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence            8865788899999999999998642   478999866   9999999999998753

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.97  E-value=2.6e-30  Score=255.83  Aligned_cols=311  Identities=12%  Similarity=0.045  Sum_probs=220.4

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~  169 (451)
                      +|+++|||.++.+  .+|+ +|.+.+++.+++++....+..  ...+.+.++++++.+.++    .+++++++||++|+.
T Consensus        27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  103 (370)
T 2z61_A           27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF  103 (370)
T ss_dssp             TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred             cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence            4778999998876  5776 799999999998763222111  122335566666655432    578999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      .+++++.           .++++|++.+|+||++.......+             ..+..++ .|+++|++++++ ++++
T Consensus       104 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~-~d~~~l~~~l~~-~~~~  157 (370)
T 2z61_A          104 FALSSII-----------DDGDEVLIQNPCYPCYKNFIRFLG-------------AKPVFCD-FTVESLEEALSD-KTKA  157 (370)
T ss_dssp             HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHTT-------------CEEEEEC-SSHHHHHHHCCS-SEEE
T ss_pred             HHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHcC-------------CEEEEeC-CCHHHHHHhccc-CceE
Confidence            9999764           157899999999998765432221             1233344 589999999975 5777


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc----CCCcceeeeccccc-CCcccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY----GIFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~----~~~pdi~t~sK~lg-~G~~iG  324 (451)
                      |+++++++++|.+.+    ++ |.++|++||+++|+||+|+++.+.|.......+    +....+.++||.++ +|+|+|
T Consensus       158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  232 (370)
T 2z61_A          158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG  232 (370)
T ss_dssp             EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred             EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence            777777777777655    34 999999999999999999988665543222222    22333558999998 689999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cceeEE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLIIG  389 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~~~  389 (451)
                      ++++++++++.+.......+++.|+++++++.++|+.+. +++.++              .++++. +..+.+ .|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~  310 (370)
T 2z61_A          233 YVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKET-EREINSMIKEFDRRRRLVLKYVKDFG-WEVNNPIGAYYVF  310 (370)
T ss_dssp             EEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCBTTEEC
T ss_pred             EEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCcceEEE
Confidence            999999999888655455667889999999888886410 121111              222222 222333 366667


Q ss_pred             EEecCChHHHHHHHH-HCCceeeecC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          390 IEFDVSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       390 ~~~~~~~~~~~~~l~-~~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.+..+..++.+.|+ ++||.+.++.     ..+.+|++++  ++++++++++++|.++++
T Consensus       311 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          311 PNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             CBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             EecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            676436778999998 7899998852     1367999877  699999999999998874

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.97  E-value=1.7e-30  Score=256.69  Aligned_cols=310  Identities=15%  Similarity=0.175  Sum_probs=219.7

Q ss_pred             ecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHH
Q 013008           94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA  171 (451)
Q Consensus        94 d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~a  171 (451)
                      +.+|+++|||.++..  ++| .+|++.+++.+++++...    ++.....+++++++++++  .++|++++||++|+..+
T Consensus        20 ~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~   92 (364)
T 1lc5_A           20 GISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCIER----YPDADYFHLHQALARHHQVPASWILAGNGETESIFTV   92 (364)
T ss_dssp             TSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred             CCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHH
Confidence            457889999998874  577 789999999998865321    222235678888888887  57999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----C-HHHHHHhcCCC
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----N-IEATRKLIQPG  245 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~~~  245 (451)
                      ++++    .         +++|++.+|+||++.......+..             +..+|.+     + ++++.+.+.+ 
T Consensus        93 ~~~~----~---------gd~vl~~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~l~~~~~~~~~-  145 (364)
T 1lc5_A           93 ASGL----K---------PRRAMIVTPGFAEYGRALAQSGCE-------------IRRWSLREADGWQLTDAILEALTP-  145 (364)
T ss_dssp             HHHH----C---------CSEEEEEESCCTHHHHHHHHTTCE-------------EEEEECCGGGTTCCCTTHHHHCCT-
T ss_pred             HHHc----C---------CCeEEEeCCCcHHHHHHHHHcCCe-------------EEEEeCCcccccchhHHHHHhccC-
Confidence            9976    1         478999999999987654433211             1112211     1 2434445543 


Q ss_pred             CeEEEE-EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-c-ccccCCCcceeeeccccc-CCc
Q 013008          246 KTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A-HEHYGIFPDIMTLAKPLA-GGL  321 (451)
Q Consensus       246 ~~aavi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~-~~~~~~~pdi~t~sK~lg-~G~  321 (451)
                      ++++|+ ++| ++++|. +++.+++++|+++|++||+++|+||+|+++++.+... . .+.++..+.+.++||.++ +|+
T Consensus       146 ~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  223 (364)
T 1lc5_A          146 DLDCLFLCTP-NNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGL  223 (364)
T ss_dssp             TCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTT
T ss_pred             CCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCcc
Confidence            445444 566 455564 5789999999999999999999999999876544321 1 122334455668999998 789


Q ss_pred             cccccc-ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccce
Q 013008          322 PIGAAL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGL  386 (451)
Q Consensus       322 ~iG~v~-~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~  386 (451)
                      |+|+++ +++++++.+...  ..+++.|+++++++.++|+.   .+++++              .++++|.+...++.|.
T Consensus       224 r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~  298 (364)
T 1lc5_A          224 RLGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRAN  298 (364)
T ss_dssp             CCEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSS
T ss_pred             ceEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCe
Confidence            999999 999998887643  24678899999998888763   222221              3345565555667788


Q ss_pred             eEEEEecCChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          387 IIGIEFDVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       387 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++++.+.....++.+.|.++||.+.++..     ++++|+++.   ++++++++++.|++++++++
T Consensus       299 ~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~  361 (364)
T 1lc5_A          299 YLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTGIA  361 (364)
T ss_dssp             EEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred             EEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence            88888854455788999999999988641     368999753   68899999999999887653

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.97  E-value=9.4e-31  Score=259.62  Aligned_cols=316  Identities=13%  Similarity=0.071  Sum_probs=224.0

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHhhcc----CC----C-eEEecCCHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACS----FA----D-RVFFSNTGT  165 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~----~~----e-~v~~~~sG~  165 (451)
                      +|+++|||.+|.+  .+| .+|.+.+++.+++++..  ...++. ....++.+.+++++    +.    + +|++++||+
T Consensus        23 ~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~   97 (376)
T 2dou_A           23 RGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPT--TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQ   97 (376)
T ss_dssp             TTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGG--GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHH
T ss_pred             cCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCC--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence            5888999999876  577 58999999999886521  122333 23566666666655    52    4 899999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  245 (451)
                      +|++.+++++.           .++++|++.+|+||++.......+.... .   .+...+..    .|+++|++.+. .
T Consensus        98 ~a~~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~----~d~~~l~~~l~-~  157 (376)
T 2dou_A           98 EGLAHLLLALT-----------EPEDLLLLPEVAYPSYFGAARVASLRTF-L---IPLREDGL----ADLKAVPEGVW-R  157 (376)
T ss_dssp             HHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHHHHHTTCEEE-E---ECBCTTSS----BCGGGSCHHHH-H
T ss_pred             HHHHHHHHHhc-----------CCCCEEEECCCCcHhHHHHHHHcCCEEE-E---eeCCCCCC----CCHHHHHHhhc-c
Confidence            99999999764           1578999999999998765443322111 1   11111111    26778877775 3


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccc---cCCCcceeeeccccc-CC
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH---YGIFPDIMTLAKPLA-GG  320 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~---~~~~pdi~t~sK~lg-~G  320 (451)
                      ++++|+++..++++|. +++.+++++|+++|++||+++|+||+|+++.+.|... ....   .+..+++.++||.++ +|
T Consensus       158 ~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  236 (376)
T 2dou_A          158 EAKVLLLNYPNNPTGA-VADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG  236 (376)
T ss_dssp             HEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG
T ss_pred             CceEEEECCCCCCcCc-cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh
Confidence            5677777655566665 5689999999999999999999999999886655321 1222   233455668999998 68


Q ss_pred             cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cc
Q 013008          321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LG  385 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G  385 (451)
                      +|+|++++++++++.+.......+++.|+++++++.++|+..  ++++++              .++++  +..+++ .|
T Consensus       237 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~  312 (376)
T 2dou_A          237 FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LSLLPPRAT  312 (376)
T ss_dssp             GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBS
T ss_pred             heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCee
Confidence            999999999999988865444556778999999999888642  222222              22333  333334 46


Q ss_pred             eeEEEEec--CChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          386 LIIGIEFD--VSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       386 ~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +++++.+.  .+..++.+.|+++||++.++..     .+.+|++++.  +++++++++++|++++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          313 MYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL  375 (376)
T ss_dssp             SEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            67888874  3467899999999999987631     3689998764  8999999999998765

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.97  E-value=2.3e-30  Score=261.99  Aligned_cols=331  Identities=11%  Similarity=0.095  Sum_probs=233.1

Q ss_pred             eecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccCCC--CCHHHHHHHHHHhhccC----CCeE
Q 013008           86 SGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNMY--YSIPQIELAKRLVACSF----ADRV  158 (451)
Q Consensus        86 ~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~--~~~~~~~l~~~l~~~~~----~e~v  158 (451)
                      ......+++.+|+++|||.+|.+  .++ .+|+|.+++.+++.+.. ..+...  ..+.+.++++.+.+.++    .++|
T Consensus        32 ~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i  108 (437)
T 3g0t_A           32 VALVTNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARAC  108 (437)
T ss_dssp             HHHHHHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred             HHHHHHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence            34445566778999999999986  454 78999999999987522 211111  12335555555554432    6799


Q ss_pred             EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc--eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC---
Q 013008          159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT--EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG---  233 (451)
Q Consensus       159 ~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  233 (451)
                      ++|+||++|+..+++++..+ +        +++  +|++.+|+|+++.......+..             +..++.+   
T Consensus       109 ~~t~g~t~al~~~~~~l~~~-~--------~gd~~~Vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~  166 (437)
T 3g0t_A          109 VPTVGSMQGCFVSFLVANRT-H--------KNREYGTLFIDPGFNLNKLQCRILGQK-------------FESFDLFEYR  166 (437)
T ss_dssp             EEESHHHHHHHHHHHHHTTS-C--------TTCSCCEEEEESCCHHHHHHHHHHTCC-------------CEEEEGGGGC
T ss_pred             EEeCCHHHHHHHHHHHHhcC-C--------CCCccEEEEeCCCcHhHHHHHHHcCCE-------------EEEEeecCCC
Confidence            99999999999999976410 1        578  8999999999876554433221             2222221   


Q ss_pred             ---CHHHHHHhcCCCCeEEEE-EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc---------cc
Q 013008          234 ---NIEATRKLIQPGKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---------WA  300 (451)
Q Consensus       234 ---d~~~le~~l~~~~~aavi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~---------~~  300 (451)
                         |+++|+++++..++++|+ +.| ++++|. +++.+.+++|+++|++||++||+||+|+++.+.+..         ..
T Consensus       167 ~~~d~~~l~~~l~~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~  244 (437)
T 3g0t_A          167 GEKLREKLESYLQTGQFCSIIYSNP-NNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPS  244 (437)
T ss_dssp             TTHHHHHHHHHHTTTCCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCC
T ss_pred             CccCHHHHHHHHhcCCceEEEEeCC-CCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhc
Confidence               789999999533455554 455 555564 568888999999999999999999999886544321         12


Q ss_pred             ccc-cCCCcceeeeccccc-CCcccccccccHHHHh-h-----------------ccCCCccCCCCCcHHHHHHHHHHHH
Q 013008          301 HEH-YGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS-A-----------------INYGDHGSTFAGSPLVCNAAIAVLD  360 (451)
Q Consensus       301 ~~~-~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~-~-----------------~~~~~~~~t~~~~~~~~aaa~aal~  360 (451)
                      ... .+....+.++||.++ +|+++|++++++++++ .                 +.......+++.++++++++.++|+
T Consensus       245 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  324 (437)
T 3g0t_A          245 VANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLK  324 (437)
T ss_dssp             GGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHH
T ss_pred             cCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Confidence            211 333344668999999 7899999999999998 7                 6544445577889999999999998


Q ss_pred             HhcC-----hHHHHH----------HHhCCCCccee-------c-ccceeEEEEec-CChHHHHHHHHHCCceeeecCC-
Q 013008          361 KISN-----PAFLAS----------KLARNPHVKDV-------R-GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK-  415 (451)
Q Consensus       361 ~~~~-----~~~~~~----------~~~~~~~~~~v-------~-g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~-  415 (451)
                      ....     +...++          .++++ .+...       + ..|.++++.+. .+..++.+.|.++||.+.++.. 
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~  403 (437)
T 3g0t_A          325 ACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTT  403 (437)
T ss_dssp             HHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTT
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeecccc
Confidence            6532     122222          22333 23333       4 56788888884 5678899999999999998742 


Q ss_pred             ----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          416 ----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       416 ----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                          ++.+|++++.. +++++++++++|.+++++
T Consensus       404 ~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          404 GSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             TCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence                15799998844 999999999999998753

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.97  E-value=9.2e-30  Score=253.57  Aligned_cols=324  Identities=12%  Similarity=0.085  Sum_probs=224.8

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCe-EEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADR-VFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~-v~~~~sG~eA~~~  170 (451)
                      .++|||.++..  .+| .+|++.+++.+++++....+..  ...+.+.++++++.+.++    .++ +++++||++|+..
T Consensus        26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~  102 (389)
T 1gd9_A           26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM  102 (389)
T ss_dssp             SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred             cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence            35789988865  466 6899999999998763222111  122335566666655444    578 9999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHhcCCCCeEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTAA  249 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~aa  249 (451)
                      +++++.           .++++|++.+|+||++.......+ .....   .+..++.   .+ -|+++|++++++ ++++
T Consensus       103 ~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g-~~~~~---v~~~~~~---~~~~d~~~l~~~l~~-~~~~  163 (389)
T 1gd9_A          103 GLSAFL-----------KDGEEVLIPTPAFVSYAPAVILAG-GKPVE---VPTYEED---EFRLNVDELKKYVTD-KTRA  163 (389)
T ss_dssp             HHTTTC-----------CTTCEEEEEESCCTTHHHHHHHHT-CEEEE---EECCGGG---TTCCCHHHHHHHCCT-TEEE
T ss_pred             HHHHhC-----------CCCCEEEEcCCCchhHHHHHHHCC-CEEEE---eccCCcc---CCCCCHHHHHHhcCc-CceE
Confidence            998653           158899999999999865443322 11110   1111100   01 189999999975 5777


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccccccc-CC-Ccc--eeeeccccc-CCccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHY-GI-FPD--IMTLAKPLA-GGLPI  323 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~-~~-~pd--i~t~sK~lg-~G~~i  323 (451)
                      |+++++++++|. .++.+++++|+++|++||+++|+||+|+++.+.|. ......+ +. ..|  +.++||.++ +|+|+
T Consensus       164 v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  242 (389)
T 1gd9_A          164 LIINSPCNPTGA-VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL  242 (389)
T ss_dssp             EEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC
T ss_pred             EEEECCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccce
Confidence            777666666675 56889999999999999999999999998876654 2222222 21 234  458999998 68999


Q ss_pred             ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cceeE
Q 013008          324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLII  388 (451)
Q Consensus       324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~~  388 (451)
                      |++++++++++.+.......+++.++++++++.++|+....+.+.++              .++++. +..+.+ .|+++
T Consensus       243 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~  321 (389)
T 1gd9_A          243 GFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG-LPTVKPKGAFYI  321 (389)
T ss_dssp             EEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCBTTEE
T ss_pred             EEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCeeeEE
Confidence            99999999998886555556788899999999888874322112221              122222 222333 35667


Q ss_pred             EEEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          389 GIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       389 ~~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++.+.   .+..++.+.|+ ++||.+.++..     .+.+|++++.  +++++++++++|.+++++.+
T Consensus       322 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~~  387 (389)
T 1gd9_A          322 FPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKERK  387 (389)
T ss_dssp             CCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcc
Confidence            77763   35778999998 89999987631     3679998764  89999999999999987654

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=1.7e-29  Score=251.99  Aligned_cols=322  Identities=17%  Similarity=0.144  Sum_probs=222.7

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~  169 (451)
                      .|+++|||.++.+  .+|+ +|.+.+++.+++++....+..  ...+.+.++++++.+.++    .+++++++||++|+.
T Consensus        39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~  115 (389)
T 1o4s_A           39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF  115 (389)
T ss_dssp             TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence            4778999998876  4664 799999999988763221111  122335555555554334    579999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHhcCCCCeE
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTA  248 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a  248 (451)
                      .+++++.           .++++|++.+|+|+++....... +.....   .+..++.   .+ -|+++|++++++ +++
T Consensus       116 ~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~---v~~~~~~---~~~~d~~~l~~~l~~-~~~  176 (389)
T 1o4s_A          116 NAFMALL-----------DPGDEVIVFSPVWVSYIPQIILA-GGTVNV---VETFMSK---NFQPSLEEVEGLLVG-KTK  176 (389)
T ss_dssp             HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHT-TCEEEE---EECCGGG---TTCCCHHHHHHTCCT-TEE
T ss_pred             HHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHc-CCEEEE---EecCCcc---CCCCCHHHHHHhccc-Cce
Confidence            9999763           15889999999999976544322 211100   0111100   01 179999999975 577


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc----CCCcceeeeccccc-CCccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY----GIFPDIMTLAKPLA-GGLPI  323 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~----~~~pdi~t~sK~lg-~G~~i  323 (451)
                      +|+++.+++++|. .++++++++|+++|++||+++|+||+|+++.+.|.......+    +....+.++||.++ +|+|+
T Consensus       177 ~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  255 (389)
T 1o4s_A          177 AVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV  255 (389)
T ss_dssp             EEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC
T ss_pred             EEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccce
Confidence            7777766666775 568899999999999999999999999988665532222222    33333558999998 68999


Q ss_pred             ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecc-cceeEEEEe
Q 013008          324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRG-LGLIIGIEF  392 (451)
Q Consensus       324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g-~G~~~~~~~  392 (451)
                      |++++++++++.+.......+++.++++++++.++|+.. .++..++          .++++. +..+.+ .|+++++.+
T Consensus       256 G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~  333 (389)
T 1o4s_A          256 GYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKMG-VKFVEPEGAFYLFFKV  333 (389)
T ss_dssp             EEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSBSSEEEEEC
T ss_pred             EEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhcC-CeeecCCcceEEEEeC
Confidence            999999999888765444557888999999888887632 2222222          222222 222223 366677776


Q ss_pred             cCChHHHHHHHH-HCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          393 DVSATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       393 ~~~~~~~~~~l~-~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ..+..++.+.|+ ++||.+.++..   ++.+|++++  .+++++++++++|.++++
T Consensus       334 ~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          334 RGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             SSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            445778999998 88999988631   368999877  499999999999998874

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.97  E-value=1.4e-29  Score=253.82  Aligned_cols=328  Identities=16%  Similarity=0.066  Sum_probs=226.5

Q ss_pred             cCCCEEEeeccCcccc-cCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHH
Q 013008           95 AEGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEA  167 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA  167 (451)
                      .+|+++|||.++.+.. .++ .+|++.+++.+++++....+..  +..+.+.++++++.+..+    .+++++++||++|
T Consensus        35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a  113 (406)
T 1xi9_A           35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA  113 (406)
T ss_dssp             HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred             HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence            3688899999887643 455 5799999999988763211111  122335666666655433    5799999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC--CeeEeeCCCHHHHHHhcCCC
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~  245 (451)
                      +..+++++.           .++++|++.+|+||++.......+ .....   .+..+  +..    -|+++|++++++ 
T Consensus       114 l~~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~g-~~~~~---v~~~~~~~~~----~d~~~l~~~l~~-  173 (406)
T 1xi9_A          114 LQLIFGALL-----------DPGDEILVPGPSYPPYTGLVKFYG-GKPVE---YRTIEEEDWQ----PDIDDIRKKITD-  173 (406)
T ss_dssp             HHHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTT-CEEEE---EEEEGGGTSE----ECHHHHHHHCCT-
T ss_pred             HHHHHHHhC-----------CCCCEEEEcCCCCccHHHHHHHcC-CEEEE---eecCCCcCCc----CCHHHHHHhhCc-
Confidence            999999763           158899999999998765443222 11100   01000  000    189999999975 


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCc-cee--eeccccc-CCc
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP-DIM--TLAKPLA-GGL  321 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p-di~--t~sK~lg-~G~  321 (451)
                      ++++|+++++++++|. .++++++++|+++|++||++||+||+|+++.+.+.......++-.. +++  ++||.++ +|+
T Consensus       174 ~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  252 (406)
T 1xi9_A          174 RTKAIAVINPNNPTGA-LYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGW  252 (406)
T ss_dssp             TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGG
T ss_pred             CceEEEEECCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCcc
Confidence            5777777777777775 5688999999999999999999999999886633333333333111 333  6899998 689


Q ss_pred             cccccc--ccH----HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCCCCcceecc
Q 013008          322 PIGAAL--VTE----KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARNPHVKDVRG  383 (451)
Q Consensus       322 ~iG~v~--~~~----~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~~~~~~v~g  383 (451)
                      |+|+++  +++    ++++.+....... ++.|+++++++.++|+...+  ++..++          .++++|.+..+.+
T Consensus       253 r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  331 (406)
T 1xi9_A          253 RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKP  331 (406)
T ss_dssp             CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC
T ss_pred             EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecC
Confidence            999999  898    9988876432223 77889999999999963211  111111          2344554444444


Q ss_pred             c-ceeEEEEec----CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          384 L-GLIIGIEFD----VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       384 ~-G~~~~~~~~----~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      . |+++++.+.    .+..++.+.|+ ++||.+.++..     .+.+|++++  ++++++++++++|.++++++.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~~  404 (406)
T 1xi9_A          332 QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKERL  404 (406)
T ss_dssp             CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC-
T ss_pred             CeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence            4 556666664    35678999998 88999987631     368999876  899999999999999997753

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.97  E-value=2e-29  Score=251.91  Aligned_cols=325  Identities=13%  Similarity=0.112  Sum_probs=222.4

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc----ccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT----HVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTE  166 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~e  166 (451)
                      |+++|||.++..  .+ ..+|++.+++.+++++..    +.+  .....+.+.++++++.+.++    .++|++++||++
T Consensus        34 ~~~~i~l~~~~~--~~-~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~  110 (398)
T 3ele_A           34 KENVYDFSIGNP--SI-PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA  110 (398)
T ss_dssp             GGGCEECCSCCC--CS-CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred             CCCeEEeecCCC--CC-CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence            567899998844  23 378999999999987631    111  11123346667777665543    679999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  245 (451)
                      |+..+++++.           .++ ++|++.+|+||++.......+.... .   .+..++..   .-|+++|++++++ 
T Consensus       111 al~~~~~~l~-----------~~g~d~vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~~---~~d~~~l~~~l~~-  171 (398)
T 3ele_A          111 SLSICFRALT-----------SDAYDEFITIAPYFPEYKVFVNAAGARLV-E---VPADTEHF---QIDFDALEERINA-  171 (398)
T ss_dssp             HHHHHHHHHC-----------CSTTCEEEEESSCCTHHHHHHHHTTCEEE-E---ECCCTTTS---SCCHHHHHHTCCT-
T ss_pred             HHHHHHHHHc-----------CCCCCEEEEeCCCchhhHHHHHHcCCEEE-E---EecCCcCC---cCCHHHHHHHhCc-
Confidence            9999999764           157 8999999999987655433322111 1   11111000   0189999999975 


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHH------hCCEEEEeccccCCCccccc--ccccccCCCcceeeecccc
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD------AGALLVFDEVQCGLGRTGYL--WAHEHYGIFPDIMTLAKPL  317 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tg~gr~G~~--~~~~~~~~~pdi~t~sK~l  317 (451)
                      ++++|+++.+++++|. .++.+.+++|+++|++      ||+++|+||+|++|.+.|..  .....++..+.+.++||.+
T Consensus       172 ~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  250 (398)
T 3ele_A          172 HTRGVIINSPNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL  250 (398)
T ss_dssp             TEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS
T ss_pred             CCCEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC
Confidence            5777777655666665 5688889999999999      99999999999998776642  2223344456667899999


Q ss_pred             c-CCcccccccccHHHHh------hccCC-CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------HHhCCCCcceec
Q 013008          318 A-GGLPIGAALVTEKVAS------AINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------KLARNPHVKDVR  382 (451)
Q Consensus       318 g-~G~~iG~v~~~~~i~~------~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~~~~~~~~~~v~  382 (451)
                      + +|+|+||+++++++++      .+... ....+++.++++++++.++++.....+.+.+       .++++. +..+.
T Consensus       251 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~  329 (398)
T 3ele_A          251 SLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGDINAYKENRDLLYEGLTRIG-YHCFK  329 (398)
T ss_dssp             SCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCCHHHHHHHHHHHHHHHHHHT-CCEEC
T ss_pred             CCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-CeecC
Confidence            8 7999999999887443      22211 1234667788888887766653222122111       222222 22233


Q ss_pred             cc-ceeEEEEec-CChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          383 GL-GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       383 g~-G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +. |+++++.+. .+..++.+.|.++||++.|+..   ++.+|+++.  +++|+|++++++|.+++++++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~  397 (398)
T 3ele_A          330 PDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKYN  397 (398)
T ss_dssp             CSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence            33 555888874 4677899999999999988642   378999764  799999999999999998765

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.97  E-value=1.1e-29  Score=252.44  Aligned_cols=317  Identities=15%  Similarity=0.097  Sum_probs=221.8

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR  176 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~  176 (451)
                      +|||.++.+  .++ .+|.+.+++.+++++ ..   .+.. ....++++.++++++  .+++++++||++|++.+++++.
T Consensus        27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~-~~---~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~   99 (381)
T 1v2d_A           27 AVNLGQGFP--SNP-PPPFLLEAVRRALGR-QD---QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV   99 (381)
T ss_dssp             CEECCCCSC--SSC-CCHHHHHHHHHHTTT-SC---SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             eEEecCCCC--CCC-CCHHHHHHHHHHHHH-hc---CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence            689988875  455 789999999998876 21   1222 235678888888887  4689999999999999999764


Q ss_pred             HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008          177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQPGKTAAVFVEP  254 (451)
Q Consensus       177 ~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~aavi~ep  254 (451)
                                 .++++|++.+|+||++..... ..+.....   .+..  +...   ..|+++|++.+++ ++++|++++
T Consensus       100 -----------~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~---v~~~~~~~~~---~~d~~~l~~~l~~-~~~~v~~~~  160 (381)
T 1v2d_A          100 -----------GPGDEVVVLEPFFDVYLPDAF-LAGAKARL---VRLDLTPEGF---RLDLSALEKALTP-RTRALLLNT  160 (381)
T ss_dssp             -----------CTTCEEEEEESCCTTHHHHHH-HTTCEEEE---EECEEETTEE---ECCHHHHHTTCCT-TEEEEEEES
T ss_pred             -----------CCCCEEEEcCCCchhHHHHHH-HcCCEEEE---EeCCCCCccC---CcCHHHHHHhcCc-CCEEEEECC
Confidence                       158899999999999765432 22211110   1111  0000   1389999999964 578888877


Q ss_pred             ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccccc--ccCCCcceeeeccccc-CCcccccccccH
Q 013008          255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHE--HYGIFPDIMTLAKPLA-GGLPIGAALVTE  330 (451)
Q Consensus       255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~--~~~~~pdi~t~sK~lg-~G~~iG~v~~~~  330 (451)
                      +++++|. .++.+++++|+++|++||+++|+||+|+++.+ |. .....  ..+..+++.++||.++ +|+|+|++++++
T Consensus       161 ~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~  238 (381)
T 1v2d_A          161 PMNPTGL-VFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPK  238 (381)
T ss_dssp             SCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCT
T ss_pred             CCCCCCC-ccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCH
Confidence            7777776 46789999999999999999999999998744 32 11111  3466777889999998 689999999999


Q ss_pred             HHHhhccCCCccCCCCCcHHHHHHHHHHHHHh--cC--hHHHHH----------HHhCCCCcceeccc-ceeEEEEecCC
Q 013008          331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKI--SN--PAFLAS----------KLARNPHVKDVRGL-GLIIGIEFDVS  395 (451)
Q Consensus       331 ~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~----------~~~~~~~~~~v~g~-G~~~~~~~~~~  395 (451)
                      ++++.+.......+++.++++++++.++|+..  .+  ++..++          .+++. .+..+.+. |+++++.+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~  317 (381)
T 1v2d_A          239 EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW  317 (381)
T ss_dssp             TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC
T ss_pred             HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChH
Confidence            98888764444457788999999999999865  22  111111          12222 22223333 67788877432


Q ss_pred             hHHHHHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008          396 ATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN  449 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~  449 (451)
                       . +.+.|.++||++.++.       ..+.+|++++.  +++++++++++|.+++++.+..
T Consensus       318 -~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~~  374 (381)
T 1v2d_A          318 -D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPREA  374 (381)
T ss_dssp             -C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC------
T ss_pred             -h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcccc
Confidence             2 6667778999998752       13689998775  9999999999999999877643

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.97  E-value=3.1e-29  Score=252.43  Aligned_cols=329  Identities=13%  Similarity=0.063  Sum_probs=225.4

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc--cccC--CCCCHHHHHHHHHHhhccC----C-CeEEecCCHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSN--MYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEAN  168 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~--~~~~~~~~~l~~~l~~~~~----~-e~v~~~~sG~eA~  168 (451)
                      ..+|||..|..  .++ .+|.|.+++.+++++..  +.+.  ....+.+.++++++.+.++    . ++|++++||++|+
T Consensus        28 ~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~  104 (422)
T 3fvs_A           28 HDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL  104 (422)
T ss_dssp             SCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred             CCceEeCCCCC--CCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence            36789988875  343 78999999999987632  1111  1223446667777766554    2 6899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC--CCCeeE--ee-CCCHHHHHHhcC
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV--MPGVNF--VE-YGNIEATRKLIQ  243 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~-~~d~~~le~~l~  243 (451)
                      ..+++++.           .++++|++.+|+||++.......+.... ..+..+.  ..+...  -. .-|+++|+++++
T Consensus       105 ~~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~  172 (422)
T 3fvs_A          105 FTAFQALV-----------DEGDEVIIIEPFFDCYEPMTMMAGGRPV-FVSLKPGPIQNGELGSSSNWQLDPMELAGKFT  172 (422)
T ss_dssp             HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-EEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC
T ss_pred             HHHHHHHc-----------CCCCEEEEcCCCchhhHHHHHHcCCEEE-EEecccccccccccccccCCCCCHHHHHhhcC
Confidence            99999764           1688999999999997654443322111 1001000  000000  00 028999999997


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc----CCCcceeeeccccc
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY----GIFPDIMTLAKPLA  318 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~----~~~pdi~t~sK~lg  318 (451)
                      + ++++|+++++++++|. .++++++++|+++|++||+++|+||+|++|.+.|.. .....+    +..+++.++||.++
T Consensus       173 ~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g  250 (422)
T 3fvs_A          173 S-RTKALVLNTPNNPLGK-VFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFS  250 (422)
T ss_dssp             T-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHT
T ss_pred             C-CceEEEECCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccC
Confidence            5 5777777777777776 458999999999999999999999999998777642 122222    23355668999998


Q ss_pred             -CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----hcChHHHHH--------------HHhCCCCc
Q 013008          319 -GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLAS--------------KLARNPHV  378 (451)
Q Consensus       319 -~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~--------------~~~~~~~~  378 (451)
                       +|+|+|++++++++++.+.......+++.++++++++.++|+.     ...++++++              .++++...
T Consensus       251 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  330 (422)
T 3fvs_A          251 ATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLK  330 (422)
T ss_dssp             CGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             CccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence             6899999999999998886555567888999999999999974     111222211              22333221


Q ss_pred             ceecccceeEEEEecC-----C----------hHHHHHHHHH-CCceeeecCC----------CCEEEEeCCCCCCHHHH
Q 013008          379 KDVRGLGLIIGIEFDV-----S----------ATPVVDACRD-SGLLVLTAGK----------GNVVRLVPPLIISEQEL  432 (451)
Q Consensus       379 ~~v~g~G~~~~~~~~~-----~----------~~~~~~~l~~-~Gv~~~~~~~----------~~~iri~~~~~~t~e~i  432 (451)
                      ...+..|+++++++..     .          ..+++..|++ +||++.|+..          .+++|+++  ..++++|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~--~~~~e~i  408 (422)
T 3fvs_A          331 PIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCF--VKDEATL  408 (422)
T ss_dssp             EEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEEC--CCCHHHH
T ss_pred             ecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEe--cCCHHHH
Confidence            1234557788887631     1          4477887665 6999988531          36789864  4599999


Q ss_pred             HHHHHHHHHHHHH
Q 013008          433 DQAVEILCKTLPV  445 (451)
Q Consensus       433 ~~~l~~l~~~l~~  445 (451)
                      ++++++|++++++
T Consensus       409 ~~~l~~l~~~l~~  421 (422)
T 3fvs_A          409 QAMDEKLRKWKVE  421 (422)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.97  E-value=4.6e-30  Score=259.83  Aligned_cols=326  Identities=17%  Similarity=0.099  Sum_probs=220.5

Q ss_pred             EecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc----------cCCCCCHHHHHHHHHHhhccC--------
Q 013008           93 YDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----------SNMYYSIPQIELAKRLVACSF--------  154 (451)
Q Consensus        93 ~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~~~--------  154 (451)
                      ||.+++.+.++..+...+.++  +|.+.+++.++.....+.          ..+.......+|++.++++++        
T Consensus        31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~  108 (435)
T 3piu_A           31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT  108 (435)
T ss_dssp             CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred             CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence            777887766666666655554  688888888765533211          011111112455555555443        


Q ss_pred             --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       155 --~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                        .+++++++||++|++.++++++           .+++.|++.+|+|++.........+..            +..+++
T Consensus       109 ~~~~~v~~~~gg~~a~~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~~g~~------------~~~~~~  165 (435)
T 3piu_A          109 FDPNHLVLTAGATSANETFIFCLA-----------DPGEAVLIPTPYYPGFDRDLKWRTGVE------------IVPIHC  165 (435)
T ss_dssp             CCGGGEEEEEHHHHHHHHHHHHHC-----------CTTCEEEEEESCCTTHHHHTTTTTCCE------------EEEEEC
T ss_pred             CCHHHEEEcCChHHHHHHHHHHhc-----------CCCCeEEECCCccccHHHHHHHhcCCE------------EEEeeC
Confidence              7899999999999999999765           258899999999988764432122221            222222


Q ss_pred             C-------CHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc
Q 013008          233 G-------NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA  300 (451)
Q Consensus       233 ~-------d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~  300 (451)
                      +       |+++|++++++     .++++|+++++++++|. +++.+.+++|+++|++||++||+||+|+++++.|..+.
T Consensus       166 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~  244 (435)
T 3piu_A          166 TSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFI  244 (435)
T ss_dssp             CGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCC
T ss_pred             CCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Confidence            1       89999999863     36778777776677775 56888999999999999999999999998766665322


Q ss_pred             -ccccC----CC-----cc----eeeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC
Q 013008          301 -HEHYG----IF-----PD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN  364 (451)
Q Consensus       301 -~~~~~----~~-----pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~  364 (451)
                       .....    +.     +|    +.++||++| +|+|+|++++ ++++.+.+..  ...++..++++++++.++++....
T Consensus       245 ~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~  322 (435)
T 3piu_A          245 SVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKL  322 (435)
T ss_dssp             CHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHH
T ss_pred             CHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHH
Confidence             11111    11     33    568999998 7899999998 5677776652  234456788888888887763210


Q ss_pred             -hHHHH----H----------HHhCCCCcceecccc-eeEEEEecC--------ChHHHHHHHHHC-CceeeecC-----
Q 013008          365 -PAFLA----S----------KLARNPHVKDVRGLG-LIIGIEFDV--------SATPVVDACRDS-GLLVLTAG-----  414 (451)
Q Consensus       365 -~~~~~----~----------~~~~~~~~~~v~g~G-~~~~~~~~~--------~~~~~~~~l~~~-Gv~~~~~~-----  414 (451)
                       +++.+    +          .+++. .+..+++.+ +++++.+..        ...++++.|+++ ||++.|+.     
T Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~  401 (435)
T 3piu_A          323 TKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT  401 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCC
Confidence             11111    1          12233 233344554 888888842        345788889887 99998752     


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          415 KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       415 ~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ..+++||+++.. +++++++++++|.++++++++
T Consensus       402 ~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~~  434 (435)
T 3piu_A          402 EPGWFRVCFANL-PERTLDLAMQRLKAFVGEYYN  434 (435)
T ss_dssp             STTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHhC
Confidence            137899988655 999999999999999987653

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.97  E-value=5.9e-29  Score=247.54  Aligned_cols=316  Identities=14%  Similarity=0.094  Sum_probs=220.6

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA  171 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~a  171 (451)
                      .+|||.++.+  .+| .+|.+.+++.+++++....+..  ...+.+.++++++.+.++    .+ +|++++||++|+..+
T Consensus        31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~  107 (386)
T 1u08_A           31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA  107 (386)
T ss_dssp             TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred             CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence            4789988865  466 6899999999998762221111  122335566666655444    56 899999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF  251 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi  251 (451)
                      ++++.           .++++|++.+|+||++....... +.....   .+..+...   ..|+++|++++.+ ++++|+
T Consensus       108 ~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~---v~~~~~~~---~~d~~~l~~~l~~-~~~~v~  168 (386)
T 1u08_A          108 ITALV-----------RNGDEVICFDPSYDSYAPAIALS-GGIVKR---MALQPPHF---RVDWQEFAALLSE-RTRLVI  168 (386)
T ss_dssp             HHHHC-----------CTTCEEEEEESCCTTHHHHHHHT-TCEEEE---EECCTTTC---CCCHHHHHHHCCT-TEEEEE
T ss_pred             HHHhC-----------CCCCEEEEeCCCchhHHHHHHHc-CCEEEE---eecCcccC---cCCHHHHHHhhcc-cCEEEE
Confidence            99763           15889999999999876543222 211110   11111000   1389999999964 677887


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc----cccc-ccCCCcceeeeccccc-CCccccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHE-HYGIFPDIMTLAKPLA-GGLPIGA  325 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~-~~~~~pdi~t~sK~lg-~G~~iG~  325 (451)
                      ++.+++++|. .++.+++++|+++|++||+++|+||+|+++.+.|..    .... ..+..+.+.++||.++ +|+|+|+
T Consensus       169 l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  247 (386)
T 1u08_A          169 LNTPHNPSAT-VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY  247 (386)
T ss_dssp             EESSCTTTCC-CCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred             EeCCCCCCCc-cCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEE
Confidence            7776677775 568899999999999999999999999988665531    1221 2455666779999998 6899999


Q ss_pred             ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCCC--Ccceecc-cceeEEEE
Q 013008          326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARNP--HVKDVRG-LGLIIGIE  391 (451)
Q Consensus       326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~~--~~~~v~g-~G~~~~~~  391 (451)
                      +++++++++.+.......+++.++++++++.++|+..  +++.++           +.+.+.  .+....+ .|+++++.
T Consensus       248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~  325 (386)
T 1u08_A          248 CVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVD  325 (386)
T ss_dssp             EECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEE
T ss_pred             EEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEEEe
Confidence            9999999988765444457888999999999999854  222211           222221  2322333 36788888


Q ss_pred             ec----CChHHHHHHHH-HCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          392 FD----VSATPVVDACR-DSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       392 ~~----~~~~~~~~~l~-~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      +.    .+..++++.|+ ++||++.|+.       ..+.+|++++  .++++|++++++|++
T Consensus       326 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          326 YSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ  385 (386)
T ss_dssp             CTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             cCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence            84    25778888887 6899998752       2367999876  489999999999864

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=5.1e-29  Score=250.14  Aligned_cols=316  Identities=15%  Similarity=0.135  Sum_probs=222.8

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~  169 (451)
                      +|+++|||.++.+  .++ .+|.+.+++ +++++....+..  ...+.+.++++++.+..+    .+++++++||++|++
T Consensus        41 ~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~  116 (409)
T 2gb3_A           41 RGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL  116 (409)
T ss_dssp             TTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHH
Confidence            5789999998876  456 578899999 888653221111  122335566666655433    478999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----C-HHHHHHhcC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----N-IEATRKLIQ  243 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~  243 (451)
                      .+++++.           .++++|++.+|+||++....... +..            +..++.+     + +++|+++++
T Consensus       117 ~~~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~-g~~------------~~~v~~~~~~~~~~~~~l~~~l~  172 (409)
T 2gb3_A          117 FSFAVIA-----------NPGDEILVLEPFYANYNAFAKIA-GVK------------LIPVTRRMEEGFAIPQNLESFIN  172 (409)
T ss_dssp             HHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHH-TCE------------EEEEECCGGGTSCCCTTGGGGCC
T ss_pred             HHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHc-CCE------------EEEeccCCCCCCccHHHHHHhhC
Confidence            9999764           15889999999999876543322 211            1222222     1 577888886


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Cccee--eeccccc-C
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLA-G  319 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~--t~sK~lg-~  319 (451)
                      + ++++|+++++++++|. .++.+++++|+++|++||++||+||+|+++.+.|..... ..++ ..|++  ++||.++ +
T Consensus       173 ~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~  249 (409)
T 2gb3_A          173 E-RTKGIVLSNPCNPTGV-VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSAC  249 (409)
T ss_dssp             T-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCG
T ss_pred             c-CCeEEEECCCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCc
Confidence            5 6777777777777776 468899999999999999999999999988666543222 1222 24554  7899998 6


Q ss_pred             CcccccccccH-HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcce-e-c
Q 013008          320 GLPIGAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKD-V-R  382 (451)
Q Consensus       320 G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~-v-~  382 (451)
                      |+|+|++++++ ++++.+.......+ +.++++++++.++|+..  ..++++              .++++. +.. + +
T Consensus       250 G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~  325 (409)
T 2gb3_A          250 GARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLD--DSFFDFVRETYRERVETVLKKLEEHG-LKRFTKP  325 (409)
T ss_dssp             GGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHHHHHHTT-CCCBCCC
T ss_pred             cceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHcC-ceeeeCC
Confidence            89999999998 89888765434444 78999999998888531  222211              222222 222 2 3


Q ss_pred             ccceeEEEEec-CChHHHHHHHHHC------CceeeecC--------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          383 GLGLIIGIEFD-VSATPVVDACRDS------GLLVLTAG--------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       383 g~G~~~~~~~~-~~~~~~~~~l~~~------Gv~~~~~~--------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ..|+++++.+. .+..++.+.|+++      ||.+.++.        ..+.+|++++  ++++++++++++|++++++++
T Consensus       326 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~  403 (409)
T 2gb3_A          326 SGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFC  403 (409)
T ss_dssp             SBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence            34677777773 4677899999987      99998752        1368999877  799999999999999998876


Q ss_pred             h
Q 013008          448 S  448 (451)
Q Consensus       448 ~  448 (451)
                      .
T Consensus       404 ~  404 (409)
T 2gb3_A          404 S  404 (409)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.97  E-value=4.6e-30  Score=257.44  Aligned_cols=321  Identities=16%  Similarity=0.107  Sum_probs=223.0

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhc-ccccC--CCCCHHHHHHHHHHhhccCC-----CeEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN--MYYSIPQIELAKRLVACSFA-----DRVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~--~~~~~~~~~l~~~l~~~~~~-----e~v~~~~sG~eA  167 (451)
                      .|+++|||.+|.+  .+| .+|.+.+++.+++++. .+.+.  ....+.+..+++++.+.++.     ++|++++||++|
T Consensus        45 ~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a  121 (404)
T 2o1b_A           45 GPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG  121 (404)
T ss_dssp             CSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred             CCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence            5788999999876  567 6899999999988542 11111  12223355555555444462     689999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCC
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGK  246 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~  246 (451)
                      ++.+++++.           .++++|++.+|+||++.......+.. ...   .+..+ +..    .|+++|++++. .+
T Consensus       122 l~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~-~~~---v~~~~~~~~----~d~~~l~~~l~-~~  181 (404)
T 2o1b_A          122 LVAVPTCVI-----------NPGDYVLLPDPGYTDYLAGVLLADGK-PVP---LNLEPPHYL----PDWSKVDSQII-DK  181 (404)
T ss_dssp             HHHHHHHHC-----------CTTCEEEEEESCCSSHHHHHHHTTCE-EEE---EECCTTTCC----CCGGGSCHHHH-HH
T ss_pred             HHHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHCCCE-EEE---eccCcccCc----CCHHHHHHhhc-cC
Confidence            999999764           15789999999999987654433221 111   11111 111    26778887775 35


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc-cc---cCCCcceeeeccccc-CCc
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EH---YGIFPDIMTLAKPLA-GGL  321 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~---~~~~pdi~t~sK~lg-~G~  321 (451)
                      +++|+++..++++|. .++.+++++|+++|++||++||+||+|+++.+.|..... ..   .+..+.+.++||.++ +|+
T Consensus       182 ~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~  260 (404)
T 2o1b_A          182 TKLIYLTYPNNPTGS-TATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF  260 (404)
T ss_dssp             EEEEEECSSCTTTCC-CCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGG
T ss_pred             ceEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchh
Confidence            677777655555665 568999999999999999999999999988665532111 11   133455668999998 689


Q ss_pred             ccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ce
Q 013008          322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GL  386 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~  386 (451)
                      |+|++++++++++.+.......+++.|+++++++.++|+..  ++++++              .++++. +..+++. |+
T Consensus       261 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~  337 (404)
T 2o1b_A          261 RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY--DDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVHAKGGI  337 (404)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCCBSS
T ss_pred             heEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhcC-CeecCCCcce
Confidence            99999999999988865444556788999999999998753  222222              222232 3333443 66


Q ss_pred             eEEEEec--CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          387 IIGIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       387 ~~~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ++++.+.  .+..++.+.|+ ++||++.++..     .+.+|++++.  +++++++++++|.+++++
T Consensus       338 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          338 YVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            7888874  24678889988 57999988631     3689998775  788999999999988764

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.97  E-value=3.6e-29  Score=247.75  Aligned_cols=312  Identities=15%  Similarity=0.128  Sum_probs=216.6

Q ss_pred             EeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhc------cC--CCeEEecCCHHHHHHHHH
Q 013008          101 LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVAC------SF--ADRVFFSNTGTEANEAAI  172 (451)
Q Consensus       101 iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~--~e~v~~~~sG~eA~~~al  172 (451)
                      |||.+|.+  .+| .+|++.+++.+++++.......+......++++.++++      .+  .++|++++|+++|++.++
T Consensus        33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~  109 (369)
T 3cq5_A           33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL  109 (369)
T ss_dssp             EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred             eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence            89998876  566 78999999999987632111122222123555555555      33  578999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV  252 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~  252 (451)
                      +++.           .++++|++.+|+||++.......+.... .   .+...+.    ..|+++|++++++.++++|++
T Consensus       110 ~~l~-----------~~gd~Vl~~~~~y~~~~~~~~~~g~~~~-~---v~~~~~~----~~d~~~l~~~i~~~~~~~v~~  170 (369)
T 3cq5_A          110 QAFG-----------GPGRTALGFQPSYSMHPILAKGTHTEFI-A---VSRGADF----RIDMDVALEEIRAKQPDIVFV  170 (369)
T ss_dssp             HHHC-----------STTCEEEEEESSCTHHHHHHHHTTCEEE-E---EECCTTS----SCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHhc-----------CCCCEEEEcCCChHHHHHHHHHcCCEEE-E---ecCCcCC----CCCHHHHHHHhhccCCCEEEE
Confidence            8764           1578999999999988754433322111 0   0111110    127899999886425678888


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc-cccC-CCcceeeeccccc-CCccccccccc
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYG-IFPDIMTLAKPLA-GGLPIGAALVT  329 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~-~~pdi~t~sK~lg-~G~~iG~v~~~  329 (451)
                      +++++++|.+.+    ++++.++|+.+++++|+||+|+++++....... +.++ ..+++.++||+++ +|+|+|+++++
T Consensus       171 ~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~  246 (369)
T 3cq5_A          171 TTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN  246 (369)
T ss_dssp             ESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred             eCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence            888888887665    566667777777999999999988643222221 2334 4566779999998 68999999999


Q ss_pred             HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCCCcceecccceeEEEEecCChHH
Q 013008          330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLAS----------KLARNPHVKDVRGLGLIIGIEFDVSATP  398 (451)
Q Consensus       330 ~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~~~~~  398 (451)
                      +++++.+...  ..+++.|+++++++.++|+..+. +...++          .+++. .+..+++.|.++++.+..+..+
T Consensus       247 ~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~  323 (369)
T 3cq5_A          247 PAFIDAVMLV--RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVVPSESNFVFFGDFSDQHA  323 (369)
T ss_dssp             THHHHHHHTT--SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEECCSSSEEEEECCSSHHH
T ss_pred             HHHHHHHHHc--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCeEEEEECCCCHHH
Confidence            9999888643  23567899999999999874210 011111          12222 2334566788888887556778


Q ss_pred             HHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       399 ~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.+.|.++||.+.+++.++.+|++++   +++++++++++|+++++
T Consensus       324 l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          324 AWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             HHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            99999999999998743478999876   79999999999998764

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.97  E-value=5.5e-29  Score=246.71  Aligned_cols=277  Identities=17%  Similarity=0.206  Sum_probs=210.4

Q ss_pred             HHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCC
Q 013008          142 QIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS  218 (451)
Q Consensus       142 ~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~  218 (451)
                      ..+|++.+++++.   .+++++++||++|+..+++++.           .++|+|++.+|+|++........+..     
T Consensus        65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~-----  128 (375)
T 3op7_A           65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-----------EPGDHVISLYPTYQQLYDIPKSLGAE-----  128 (375)
T ss_dssp             CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-----------CTTCEEEEEESSCTHHHHHHHHTTCE-----
T ss_pred             hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHcCCE-----
Confidence            5688888888763   6899999999999999999764           26899999999999876543322211     


Q ss_pred             CCcCCCCCeeEeeCC-------CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          219 PFEPVMPGVNFVEYG-------NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       219 ~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                              +..++.+       |+++|++++++ ++++|+++++++++|. +++.+++++|+++|++||++||+||+|++
T Consensus       129 --------~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~-~~~~~~l~~i~~la~~~~~~li~De~~~~  198 (375)
T 3op7_A          129 --------VDLWQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGA-VMDRTYLEELVEIASEVGAYILSDEVYRS  198 (375)
T ss_dssp             --------EEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSCC
T ss_pred             --------EEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence                    1222211       89999999975 6778888888777775 56899999999999999999999999998


Q ss_pred             CCcccccccccccCCCcceeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH
Q 013008          292 LGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS  370 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~  370 (451)
                      +++.+.....+.++..+++.+|||+++ +|+|+|++++++++++.+.......+++.+++.++++.++++..+  .+.++
T Consensus       199 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~  276 (375)
T 3op7_A          199 FSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQ--EILER  276 (375)
T ss_dssp             CSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHH--HHHHH
T ss_pred             ccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccH--HHHHH
Confidence            876543334455667788889999998 689999999999999999877677788889999999998887432  22211


Q ss_pred             --------------HHhCCCCcceeccc-ceeEEEEec--CChHHHHHHHH-HCCceeeecCC---CCEEEEeCCCCCCH
Q 013008          371 --------------KLARNPHVKDVRGL-GLIIGIEFD--VSATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISE  429 (451)
Q Consensus       371 --------------~~~~~~~~~~v~g~-G~~~~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~---~~~iri~~~~~~t~  429 (451)
                                    .+++++.+..+.+. |.+.++.+.  .+..++++.|+ ++||.+.|+..   .+.+|++  +..++
T Consensus       277 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~--~~~~~  354 (375)
T 3op7_A          277 NRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLG--FACEQ  354 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEC--CCSCH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEE--ecCCH
Confidence                          23445555545444 455666663  45678888885 78999988642   3678885  55677


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 013008          430 QELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       430 e~i~~~l~~l~~~l~~~~~  448 (451)
                      +++++++++|.+++++++.
T Consensus       355 ~~i~~~l~~l~~~l~~~~~  373 (375)
T 3op7_A          355 ETLIKGLEKLSQFLRRFDK  373 (375)
T ss_dssp             HHHHHHHHHHHHHHGGGC-
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999987653

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.97  E-value=2.5e-29  Score=248.01  Aligned_cols=310  Identities=15%  Similarity=0.120  Sum_probs=218.9

Q ss_pred             cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHH
Q 013008           95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAI  172 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al  172 (451)
                      .+|+.+|||.++.+  .++ .+|+|.+++.+++++.......++.....+++++++++++  .++|++++||++|+..++
T Consensus        23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~   99 (360)
T 3hdo_A           23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI   99 (360)
T ss_dssp             SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred             ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence            47789999999876  454 7899999999998774211122222234688888888887  689999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV  252 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~  252 (451)
                      +++.           .++|+|++.+|+|+++.......+..             +..++.++-..++++++..+.+++++
T Consensus       100 ~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~l~~~~~~~~v~i  155 (360)
T 3hdo_A          100 RAFA-----------AEGEEIGYVHPSYSYYGTLAEVQGAR-------------VRTFGLTGDFRIAGFPERYEGKVFFL  155 (360)
T ss_dssp             HHHC-----------CTTCEEEEESSSCTHHHHHHHHHTCE-------------EEEECBCTTSSBTTCCSSBCSSEEEE
T ss_pred             HHHh-----------CCCCEEEEcCCChHHHHHHHHHCCCE-------------EEEeeCCCCCCHHHHHhhcCCCEEEE
Confidence            9664           15899999999999877554433221             12222211101122222112336666


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCcccccccccHH
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK  331 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~  331 (451)
                      +.+++++|.+.+    +++|.++|+++|+++|+||+|++|...+.....+..+..+.+.++||.++ +|+|+|+++++++
T Consensus       156 ~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~  231 (360)
T 3hdo_A          156 TTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPE  231 (360)
T ss_dssp             ESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHH
T ss_pred             eCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHH
Confidence            656677777776    78899999999999999999998743322222233444556678999998 6899999999999


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec-CCh
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD-VSA  396 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~-~~~  396 (451)
                      +++.+...  ..+++.|+++++++.++|+.   .+++++              .++++ .+...++.|.++++.+. .+.
T Consensus       232 ~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~  305 (360)
T 3hdo_A          232 VIAALDKI--RDHYNLDRLAQAACVAALRD---QAYLSECCRRIRETREWFTTELRSI-GYDVIPSQGNYLFATPPDRDG  305 (360)
T ss_dssp             HHHHHHHH--SCSCCSCHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSSEEEEECTTCCH
T ss_pred             HHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCCccEEEEECCCCCH
Confidence            99888643  24578899999999999873   222222              22233 34445677888888774 467


Q ss_pred             HHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          397 TPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      .++.+.|.++||++.+++.   .+.+|++++   +++++++++++|+++.+
T Consensus       306 ~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          306 KRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             HHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence            8899999999999988642   367999765   89999999999987654

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.97  E-value=4.4e-29  Score=250.68  Aligned_cols=321  Identities=17%  Similarity=0.116  Sum_probs=220.4

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAAI  172 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~al  172 (451)
                      +|||.++..  .+| .+|.+.+++.+++++....+..  +..+.+.++++++.+.++    .+ +|++++||++|+..++
T Consensus        27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~  103 (411)
T 2o0r_A           27 AVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV  103 (411)
T ss_dssp             CEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred             eeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence            689988865  466 6899999999998763111111  122335566666655444    55 8999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVF  251 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~aavi  251 (451)
                      +++.           .++++|++.+|+||++...... .+.....   .+..++ ..+  ..|+++|++++++ ++++|+
T Consensus       104 ~~~~-----------~~gd~Vl~~~~~y~~~~~~~~~-~g~~~~~---v~~~~~~~~~--~~d~~~l~~~l~~-~~~~v~  165 (411)
T 2o0r_A          104 LGLV-----------EPGSEVLLIEPFYDSYSPVVAM-AGAHRVT---VPLVPDGRGF--ALDADALRRAVTP-RTRALI  165 (411)
T ss_dssp             HHHC-----------CTTCEEEEEESCCTTHHHHHHH-TTCEEEE---EECEEETTEE--ECCHHHHHHHCCT-TEEEEE
T ss_pred             HHhc-----------CCCCEEEEeCCCcHhHHHHHHH-cCCEEEE---eeccccccCC--CCCHHHHHHhhcc-CceEEE
Confidence            9764           1588999999999997654322 2211110   111110 000  0389999999974 677888


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-ccccc----cCCCcceeeeccccc-CCccccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH----YGIFPDIMTLAKPLA-GGLPIGA  325 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~----~~~~pdi~t~sK~lg-~G~~iG~  325 (451)
                      ++++++++|. .++.+++++|+++|++||++||+||+|+++.+.|.. .....    .+..+.+.++||.++ +|+|+|+
T Consensus       166 l~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  244 (411)
T 2o0r_A          166 INSPHNPTGA-VLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGW  244 (411)
T ss_dssp             EESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEE
T ss_pred             EeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEE
Confidence            7777777775 568899999999999999999999999988766642 12211    233445668999998 6899999


Q ss_pred             ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceec-ccceeEEE
Q 013008          326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVR-GLGLIIGI  390 (451)
Q Consensus       326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~-g~G~~~~~  390 (451)
                      +++++++++.+.......+++.++++++++.++|+..  +++.++              .+++.. +..+. ..|+++++
T Consensus       245 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~  321 (411)
T 2o0r_A          245 ACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTE--DAWVAALRNSLRARRDRLAAGLTEIG-FAVHDSYGTYFLCA  321 (411)
T ss_dssp             EECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCCCBSSEEEE
T ss_pred             EeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHcC-CEecCCCeeEEEEE
Confidence            9999999988765444456778888899998888753  222221              122222 22222 34668888


Q ss_pred             Eec----CChHHHHHHHH-HCCceeeecC----------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          391 EFD----VSATPVVDACR-DSGLLVLTAG----------------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       391 ~~~----~~~~~~~~~l~-~~Gv~~~~~~----------------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+.    .+..++.+.|+ ++||++.++.                ..+.+||++.  .+++++++++++|.+++++.+
T Consensus       322 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~~  397 (411)
T 2o0r_A          322 DPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERPA  397 (411)
T ss_dssp             ECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC---
T ss_pred             ecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhccC
Confidence            884    24678888887 5799998751                1256899865  489999999999998876554

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.97  E-value=4.6e-28  Score=242.33  Aligned_cols=318  Identities=16%  Similarity=0.142  Sum_probs=222.7

Q ss_pred             CCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~  169 (451)
                      ||++|+||.++.+   +|+ .+|++.+++.+++++......     ........+++++++++++.+..+++++|++++.
T Consensus        44 ~g~~~i~~~~~~~---~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~  120 (401)
T 2bwn_A           44 GKQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNAND  120 (401)
T ss_dssp             CEEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHH
T ss_pred             CCCcEEEeeCCCc---ccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHH
Confidence            7899999998643   444 478999999999987432211     1234568899999999998555555577888999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--C-CC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--P-GK  246 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~-~~  246 (451)
                      .+++++....         +++.|++.++.|++.... ....            ...+..++.+|+++|+++++  . ++
T Consensus       121 ~~~~~l~~~~---------~gd~Vl~~~~~~~~~~~~-~~~~------------g~~~~~v~~~d~~~le~~l~~~~~~~  178 (401)
T 2bwn_A          121 ATLSTLRVLF---------PGLIIYSDSLNHASMIEG-IKRN------------AGPKRIFRHNDVAHLRELIAADDPAA  178 (401)
T ss_dssp             HHHHHHHHHS---------TTCEEEEETTCCHHHHHH-HHHS------------CCCEEEECTTCHHHHHHHHHHSCTTS
T ss_pred             HHHHHHhcCC---------CCCEEEECchhhHHHHHH-HHHc------------CCeEEEEcCCCHHHHHHHHHhhccCC
Confidence            9988653221         478888888877655432 2221            12355677779999999886  1 46


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-C-CCcccccccccccCC--Ccc--eeeecccccCC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI--FPD--IMTLAKPLAGG  320 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~~~--~pd--i~t~sK~lg~G  320 (451)
                      +++|+++++++++|.+.+    +++|+++|++||+++|+||+|+ | +|..|.++. ..+++  .+|  +.++||+++. 
T Consensus       179 ~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~-  252 (401)
T 2bwn_A          179 PKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV-  252 (401)
T ss_dssp             CEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS-
T ss_pred             ceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC-
Confidence            889999999999998776    9999999999999999999998 3 565665443 34444  234  4489999983 


Q ss_pred             cccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceecccc
Q 013008          321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVRGLG  385 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~g~G  385 (451)
                       +.|++++++++++.+....  ...+.+.++++++++.++++.++..   +..++          .++++ .+..+.+.|
T Consensus       253 -~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  330 (401)
T 2bwn_A          253 -FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGS  330 (401)
T ss_dssp             -CCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSS
T ss_pred             -CCCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCC
Confidence             2288889998888765321  1223334678899999999987654   33322          11212 122233445


Q ss_pred             eeEEEEecC--ChHHHHHHHH-HCCceeeecCC-----C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          386 LIIGIEFDV--SATPVVDACR-DSGLLVLTAGK-----G-NVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       386 ~~~~~~~~~--~~~~~~~~l~-~~Gv~~~~~~~-----~-~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .++++.+..  ...++.+.|+ ++||.+.|+..     + +.+|++++..++++++++++++|+++++++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          331 HIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             SCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             CeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence            678887742  4567888897 78999987531     1 489999998899999999999999987654

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.96  E-value=1.7e-28  Score=245.91  Aligned_cols=325  Identities=14%  Similarity=0.083  Sum_probs=220.2

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc-ccC--CCCCHHHHHHHHHHhhccC----C-CeEEecCCHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VSN--MYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANE  169 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~--~~~~~~~~~l~~~l~~~~~----~-e~v~~~~sG~eA~~  169 (451)
                      ..+|||..+..  .++ .+|+|.+++.+++.+... .+.  .+..+.+.++++++.+.++    . ++|++++||++|+.
T Consensus        23 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~   99 (410)
T 3e2y_A           23 PSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF   99 (410)
T ss_dssp             TTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             CCeEEecCCCC--CCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence            45788888764  343 689999999999875311 111  1123345666666665443    4 79999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC-CCe--eEeeC-CCHHHHHHhcCCC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGV--NFVEY-GNIEATRKLIQPG  245 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~d~~~le~~l~~~  245 (451)
                      .+++++.           .++++|++.+|+|+++.......+.... ..++.+.. .+.  ..-.+ -|+++|++++++ 
T Consensus       100 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-  166 (410)
T 3e2y_A          100 NSIQGLV-----------DPGDEVIIMVPFYDCYEPMVRMAGAVPV-FIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-  166 (410)
T ss_dssp             HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-EEECEECCCCSSCCBGGGEECCHHHHHTTCCT-
T ss_pred             HHHHHhc-----------CCCCEEEEeCCCchhhHHHHHHcCCEEE-EEeccccccccccccccCCcCCHHHHHhhcCC-
Confidence            9999764           1588999999999987654433322111 10000000 000  00000 289999999964 


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc----CCCcceeeeccccc-C
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY----GIFPDIMTLAKPLA-G  319 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~----~~~pdi~t~sK~lg-~  319 (451)
                      ++++|+++++++++|. .++++.+++|+++|++||+++|+||+|++|.+.|... ....+    +..+++.++||.++ +
T Consensus       167 ~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~  245 (410)
T 3e2y_A          167 KTKAIILNTPHNPLGK-VYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVT  245 (410)
T ss_dssp             TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCG
T ss_pred             CceEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCC
Confidence            6788888877777776 5688899999999999999999999999987776522 22222    22345568999998 6


Q ss_pred             CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----hcChHHHHH--------------HHhCCCCcce
Q 013008          320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLAS--------------KLARNPHVKD  380 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~--------------~~~~~~~~~~  380 (451)
                      |+|+|++++++++++.+.......+++.++++++++.++|+.     ...+++.++              .++++.....
T Consensus       246 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  325 (410)
T 3e2y_A          246 GWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPI  325 (410)
T ss_dssp             GGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             CceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeec
Confidence            899999999999998886555667888999999999999873     111222211              2333432222


Q ss_pred             ecccceeEEEEecC-----C--------hHHHHHHHH-HCCceeeecCC----------CCEEEEeCCCCCCHHHHHHHH
Q 013008          381 VRGLGLIIGIEFDV-----S--------ATPVVDACR-DSGLLVLTAGK----------GNVVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       381 v~g~G~~~~~~~~~-----~--------~~~~~~~l~-~~Gv~~~~~~~----------~~~iri~~~~~~t~e~i~~~l  436 (451)
                      .+..|+++++++..     .        ..+++..++ ++||++.|+..          .+++||+  +.+++|+|++++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~~e~l~~~l  403 (410)
T 3e2y_A          326 VPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FIKKDSTLDAAE  403 (410)
T ss_dssp             BCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CCCCHHHHHHHH
T ss_pred             CCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--EcCCHHHHHHHH
Confidence            34567788887731     1        136777665 67999987531          2678886  556999999999


Q ss_pred             HHHHH
Q 013008          437 EILCK  441 (451)
Q Consensus       437 ~~l~~  441 (451)
                      ++|++
T Consensus       404 ~~l~~  408 (410)
T 3e2y_A          404 EIFRA  408 (410)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99875

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.96  E-value=1.8e-28  Score=240.81  Aligned_cols=316  Identities=14%  Similarity=0.107  Sum_probs=213.4

Q ss_pred             EeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecC
Q 013008           85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSN  162 (451)
Q Consensus        85 ~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~  162 (451)
                      .+++|.++++.+|+++|||.++..  .++ .+|++.+++.+++.....    ++.....+++++++++++  .+++++++
T Consensus         2 ~~~~g~~~~~~~g~~~id~~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~i~~t~   74 (350)
T 3fkd_A            2 IFGHGDEGITPLSSEIVNFSTTVW--TDG-DKDHLEKHLVENLNCIRH----YPEPDAGTLRQMLAKRNSVDNNAILVTN   74 (350)
T ss_dssp             --------------CCEECSCCSC--CCS-CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred             cccccchHhhhccccEEEccCCCC--CCC-CCHHHHHHHHHhHhHHhc----CCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence            468899999999999999999865  455 789999999988744322    222223578888998887  57999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHh
Q 013008          163 TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKL  241 (451)
Q Consensus       163 sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~  241 (451)
                      ||++|+..+++++.             +++|++.+|+|+++.......+             ..+..++. ++.+.    
T Consensus        75 g~~~al~~~~~~l~-------------gd~Vi~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~----  124 (350)
T 3fkd_A           75 GPTAAFYQIAQAFR-------------GSRSLIAIPSFAEYEDACRMYE-------------HEVCFYPSNEDIGE----  124 (350)
T ss_dssp             HHHHHHHHHHHHTT-------------TCEEEEEESCCHHHHHHHHHTT-------------CEEEEEETTSCGGG----
T ss_pred             CHHHHHHHHHHHHC-------------CCEEEEeCCCcHHHHHHHHHcC-------------CeEEEEecCCcccc----
Confidence            99999999999655             5789999999998764433322             12333443 22111    


Q ss_pred             cCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc--cccccCCCcceeeeccccc-
Q 013008          242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHEHYGIFPDIMTLAKPLA-  318 (451)
Q Consensus       242 l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~~~~~~pdi~t~sK~lg-  318 (451)
                      +...++++|+++..++++|.+ .+.+.+++|+++|+++  +||+||+|.++++.+...  ..+..+....+.++||.++ 
T Consensus       125 ~~~~~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~  201 (350)
T 3fkd_A          125 ADFSNMDFCWLCNPNNPDGRL-LQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGI  201 (350)
T ss_dssp             SCCTTCSEEEEESSCTTTCCC-CCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSC
T ss_pred             CccCCCCEEEEeCCCCCcCCC-CCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccC
Confidence            221355666666666666654 5666677777777655  999999999887666432  2222233345568999998 


Q ss_pred             CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc--Ch---HHHHH------HHhCCCCcceeccccee
Q 013008          319 GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--NP---AFLAS------KLARNPHVKDVRGLGLI  387 (451)
Q Consensus       319 ~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~~---~~~~~------~~~~~~~~~~v~g~G~~  387 (451)
                      +|+++|++++++++++.+....  .+++.++++++++.++|+...  .+   ...++      .++++|.+...++.|.+
T Consensus       202 ~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~  279 (350)
T 3fkd_A          202 PGLRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTF  279 (350)
T ss_dssp             GGGCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECCCSSSE
T ss_pred             cchheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECCCCCcE
Confidence            7899999999999999887543  457789999999999998533  11   11111      33445666666777888


Q ss_pred             EEEEecC-ChHHHHHHHHH-CCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFDV-SATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       388 ~~~~~~~-~~~~~~~~l~~-~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +++.++. +..++.+.|.+ +||.+.++..     .+.+|++++   +++++++++++|++++++
T Consensus       280 ~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          280 FLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence            8888853 67889999999 9999998642     468999755   788899999988877653

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.96  E-value=7.4e-29  Score=251.96  Aligned_cols=328  Identities=14%  Similarity=0.067  Sum_probs=218.5

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCC-CCHHHHHHHHHHhhcc----C--CCeEEecCCHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMY-YSIPQIELAKRLVACS----F--ADRVFFSNTGTE  166 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~l~~~~----~--~e~v~~~~sG~e  166 (451)
                      +|+++|||.+|..  .++ .+|.|++++.+++++...  ....+ ......+|++.+++++    +  .++|++++|+++
T Consensus        67 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~  143 (449)
T 3qgu_A           67 PDAKIISLGIGDT--TEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKC  143 (449)
T ss_dssp             TTCCCEECSSCCC--CCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred             CCCCEEEeeCCCC--CCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHH
Confidence            6889999999854  343 689999999999986431  11122 2222567777777775    3  679999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC-CC
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PG  245 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~  245 (451)
                      |+..+ ..+.           .++|.|++.+|+||++.......+....+..   ....++..++.++.+.+...+. ..
T Consensus       144 al~~~-~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  208 (449)
T 3qgu_A          144 DIARI-QMMF-----------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG---TGFDGIEYMVCNPDNHFFPDLSKAK  208 (449)
T ss_dssp             HHHHH-HHHH-----------CSSSCEEEEESCCTHHHHHHHHHTCSCCBCS---SSBTTEEEEECCGGGTTCCCGGGCC
T ss_pred             HHHHH-HHHh-----------CCCCEEEEcCCCChhHHHHHHHcCCcccccc---cccceeEEEecccccCCcCChhHcC
Confidence            99988 4333           1689999999999998765544433211110   0012244455443222211111 13


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccccccc----CCCcceeeeccccc-C
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHY----GIFPDIMTLAKPLA-G  319 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~----~~~pdi~t~sK~lg-~  319 (451)
                      ++++|+++..++++|. +++.+++++|+++|++||++||+||+|++|++.|. ......+    +..+++.+|||++| +
T Consensus       209 ~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~  287 (449)
T 3qgu_A          209 RTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT  287 (449)
T ss_dssp             CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred             CCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence            5666666665666665 57899999999999999999999999999877653 1122222    33455779999998 7


Q ss_pred             CcccccccccHHHHhh--------ccCCCccCCCCCcHHHHHHHHHHHHHhcC---hHHHHH----------HHhCCCCc
Q 013008          320 GLPIGAALVTEKVASA--------INYGDHGSTFAGSPLVCNAAIAVLDKISN---PAFLAS----------KLARNPHV  378 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~--------~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~----------~~~~~~~~  378 (451)
                      |+|+||+++++++++.        +.......+++.++++++++.++|+....   ++..++          .++++. +
T Consensus       288 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~  366 (449)
T 3qgu_A          288 GVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG-F  366 (449)
T ss_dssp             TCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred             cceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence            9999999999887762        22222334557899999999888764111   111111          222232 3


Q ss_pred             ceecc-cceeEEEEec-CChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          379 KDVRG-LGLIIGIEFD-VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       379 ~~v~g-~G~~~~~~~~-~~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ....+ .|.++++.+. .+..++++.|+++ ||++.|+..     .+++||+  +..++|+|++++++|++++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          367 SVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGK  439 (449)
T ss_dssp             CEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC-
T ss_pred             eeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            23333 4788888874 4577899899876 999987631     3688987  556999999999999998864

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.96  E-value=2.5e-28  Score=241.08  Aligned_cols=307  Identities=17%  Similarity=0.162  Sum_probs=221.3

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a  175 (451)
                      +++|||.++..  +++ .+|++++++.++++....    ++.....+++++++++++  .++|++++||++|+..+++++
T Consensus        30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l  102 (365)
T 3get_A           30 KEVIKLASNEN--PFG-TPPKAIECLRQNANKAHL----YPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK  102 (365)
T ss_dssp             SCCEECSSCCC--TTC-SCHHHHHHHHHHGGGTTS----CCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             CceEEecCCCC--CCC-CCHHHHHHHHHHHHhhcc----CCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence            67899998865  465 789999999998875322    222223578888888887  679999999999999999976


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CCCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVEYGNIEATRKLIQPGKTAAVFVEP  254 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~aavi~ep  254 (451)
                      .           .++++|++.+|+|+++.......+.....    .+. ..+.     .|+++|++++++ ++++|+++.
T Consensus       103 ~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~-----~d~~~l~~~l~~-~~~~v~~~~  161 (365)
T 3get_A          103 L-----------NSKNAFLQAGVTFAMYEIYAKQCGAKCYK----TQSITHNL-----DEFKKLYETHKD-EIKLIFLCL  161 (365)
T ss_dssp             C-----------CTTCEEEECSSCCTHHHHHHHHHTCEEEE----CSSSSCCH-----HHHHHHHHHTTT-TEEEEEEES
T ss_pred             h-----------CCCCEEEEeCCChHHHHHHHHHcCCEEEE----EecCCCCC-----CCHHHHHHHhCC-CCCEEEEcC
Confidence            4           16899999999999876544333222111    111 1111     278999999974 677777765


Q ss_pred             ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc--cc-ccc-cc---cccCCCcceeeeccccc-CCcccccc
Q 013008          255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR--TG-YLW-AH---EHYGIFPDIMTLAKPLA-GGLPIGAA  326 (451)
Q Consensus       255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr--~G-~~~-~~---~~~~~~pdi~t~sK~lg-~G~~iG~v  326 (451)
                      +++++|. +.+.+.+++|+++| ++|+++|+||+|+++.+  .+ ... ..   +..+....+.++||.++ +|+++|++
T Consensus       162 p~nptG~-~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  239 (365)
T 3get_A          162 PNNPLGE-CLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYG  239 (365)
T ss_dssp             SCTTTCC-CCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEE
T ss_pred             CCCCCCC-CcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEE
Confidence            5666665 45777888888888 57999999999987652  22 111 11   22343445568999998 68999999


Q ss_pred             cccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEe
Q 013008          327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEF  392 (451)
Q Consensus       327 ~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~  392 (451)
                      ++++++++.+...  ..+++.|+++++++.++|+.   .+++++              .++++ .+...++.|.++++.+
T Consensus       240 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~  313 (365)
T 3get_A          240 IANANIISAFYKL--RAPFNVSNLALKAAVAAMDD---DEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSYTNFITYFF  313 (365)
T ss_dssp             EECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSSEEEEEC
T ss_pred             EcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCeEEEEEC
Confidence            9999999888643  23467899999999988873   222222              22333 3444667788888888


Q ss_pred             cC-ChHHHHHHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          393 DV-SATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       393 ~~-~~~~~~~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .. +..++.+.|.++||.+.++..  .+.+|++++   +++++++++++|++++
T Consensus       314 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          314 DEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             SSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence            54 678899999999999988752  378999865   8999999999999876

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.96  E-value=5.2e-28  Score=243.13  Aligned_cols=327  Identities=13%  Similarity=0.064  Sum_probs=217.0

Q ss_pred             CEEEeeccCcccc-cCCCCCHHHHHHHHHHHhhcc-cccCC--CCCHHHHHHHHHHhhc----------cCCCeEEecCC
Q 013008           98 REYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLT-HVSNM--YYSIPQIELAKRLVAC----------SFADRVFFSNT  163 (451)
Q Consensus        98 ~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~-~~~~~--~~~~~~~~l~~~l~~~----------~~~e~v~~~~s  163 (451)
                      +++|||.++.+.. .-...+|.+.+++.+++++.. +.+..  ...+.+..+++++.+.          ...++|++++|
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g  112 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG  112 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence            5689999887642 112478999999999987632 11111  1223355566655521          12679999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHhc
Q 013008          164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLI  242 (451)
Q Consensus       164 G~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l  242 (451)
                      |++|+..+++++.           .++++|++.+|+||++....... +.....   .+..++.   .+ .|+++|++++
T Consensus       113 ~~~al~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~---~~~~d~~~l~~~l  174 (416)
T 1bw0_A          113 GSHGILMAITAIC-----------DAGDYALVPQPGFPHYETVCKAY-GIGMHF---YNCRPEN---DWEADLDEIRRLK  174 (416)
T ss_dssp             HHHHHHHHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHT-TCEEEE---EEEEGGG---TTEECHHHHHHHC
T ss_pred             hHHHHHHHHHHhC-----------CCCCEEEEcCCCcHhHHHHHHHc-CcEEEE---eecCccc---CCCCCHHHHHHHh
Confidence            9999999999764           15789999999999976543322 211100   0100000   01 2899999999


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc----cc-cccccCCC---cceeeec
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----LW-AHEHYGIF---PDIMTLA  314 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~----~~-~~~~~~~~---pdi~t~s  314 (451)
                      +++..++++++| ++++|. .++++++++|+++|++||++||+||+|+++.+.|.    .+ ....++..   ..+.++|
T Consensus       175 ~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~s  252 (416)
T 1bw0_A          175 DDKTKLLIVTNP-SNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTA  252 (416)
T ss_dssp             CTTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred             ccCCeEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecch
Confidence            754444555666 455565 57899999999999999999999999998866554    21 22222222   2234789


Q ss_pred             cccc-CCcccccccccHH--HHhhccCC---CccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhC
Q 013008          315 KPLA-GGLPIGAALVTEK--VASAINYG---DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLAR  374 (451)
Q Consensus       315 K~lg-~G~~iG~v~~~~~--i~~~~~~~---~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~  374 (451)
                      |.++ +|+|+||++++++  +++.+...   ....+++.|+++++++.++|+.+. ++++++              .+++
T Consensus       253 K~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~  331 (416)
T 1bw0_A          253 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP-QEHLDQIVAKIEESAMYLYNHIGE  331 (416)
T ss_dssp             TTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9986 5899999998653  44433211   112467789999999999988432 222211              2344


Q ss_pred             CCCcceecc-cceeEEEEec-------CChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          375 NPHVKDVRG-LGLIIGIEFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       375 ~~~~~~v~g-~G~~~~~~~~-------~~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      +|.+..+.+ .|+++++.++       .+..++++.|+ ++||.+.|+.   ..+.+|+++  .++++++++++++|.++
T Consensus       332 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~~l~~l~~~  409 (416)
T 1bw0_A          332 CIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERIKAF  409 (416)
T ss_dssp             STTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHH
Confidence            555544434 4777887774       34677888886 7899998864   236899987  47899999999999999


Q ss_pred             HHHHh
Q 013008          443 LPVLD  447 (451)
Q Consensus       443 l~~~~  447 (451)
                      +++.+
T Consensus       410 l~~~~  414 (416)
T 1bw0_A          410 CQRHA  414 (416)
T ss_dssp             HHHHB
T ss_pred             HHHhh
Confidence            98764

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.96  E-value=5.3e-27  Score=234.32  Aligned_cols=322  Identities=16%  Similarity=0.056  Sum_probs=220.6

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC-------CCHHHHHHHHHHhhccCC---CeEEecCCHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-------YSIPQIELAKRLVACSFA---DRVFFSNTGT  165 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~---e~v~~~~sG~  165 (451)
                      +|+.++.|..+..    |+.+|++.+++.+++++.......+       ......+++++++++++.   +.+++++||+
T Consensus        20 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t   95 (406)
T 1kmj_A           20 NGLPLAYLDSAAS----AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT   95 (406)
T ss_dssp             TTEECEECCTTTC----CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred             CCCceEEecCCcc----CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence            4555555444332    4688999999999998742111111       233477899999999875   7899999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh---hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhc
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI  242 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l  242 (451)
                      +|++.++++++.+..       .++++|++.+++||+......   ...+.....   .+...+.    ..|+++|++++
T Consensus        96 ~a~~~~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~----~~d~~~l~~~l  161 (406)
T 1kmj_A           96 EGINLVANSWGNSNV-------RAGDNIIISQMEHHANIVPWQMLCARVGAELRV---IPLNPDG----TLQLETLPTLF  161 (406)
T ss_dssp             HHHHHHHHHTHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE---ECBCTTS----CBCGGGHHHHC
T ss_pred             HHHHHHHHHhhhhcC-------CCCCEEEEecccchHHHHHHHHHHHhCCCEEEE---EecCCCC----CcCHHHHHHHh
Confidence            999999998753210       158899999999998753321   111211111   1111111    02789999999


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCC
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGG  320 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G  320 (451)
                      .+ ++++|+++++++++|.+.+    +++|+++|++||+++|+||+|+. |...  +.....  .+|++  +++|.+|+ 
T Consensus       162 ~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~~--~~~~~~--~~d~~~~s~~K~~g~-  230 (406)
T 1kmj_A          162 DE-KTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHHP--VDVQAL--DCDFYVFSGHKLYGP-  230 (406)
T ss_dssp             CT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC--CCHHHH--TCSEEEEEGGGTTSC-
T ss_pred             cc-CCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCCC--Cccccc--CCCEEEEEchhccCC-
Confidence            75 6889999999888888776    99999999999999999999963 3321  122222  46765  68999853 


Q ss_pred             cccccccccHHHHhhccCCCcc---------------------CCCCCcHHHHHHHH-HHHHHhcCh---HHHHH-----
Q 013008          321 LPIGAALVTEKVASAINYGDHG---------------------STFAGSPLVCNAAI-AVLDKISNP---AFLAS-----  370 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~---------------------~t~~~~~~~~aaa~-aal~~~~~~---~~~~~-----  370 (451)
                      ..+|++++++++++.+.+...+                     .+.+.+++.+++++ ++++.+.+.   .+.++     
T Consensus       231 ~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  310 (406)
T 1kmj_A          231 TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLM  310 (406)
T ss_dssp             TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            2279999999999887654321                     12334556666555 677765421   22222     


Q ss_pred             -----HHhCCCCcceecc--cceeEEEEec-CChHHHHHHHHHCCceeeecC-----------CCCEEEEeCCCCCCHHH
Q 013008          371 -----KLARNPHVKDVRG--LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQE  431 (451)
Q Consensus       371 -----~~~~~~~~~~v~g--~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------~~~~iri~~~~~~t~e~  431 (451)
                           .++++|.+..+.+  .|.++.+.+. .+..++.+.|.++||.+.++.           ..+.+|++++..+|++|
T Consensus       311 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~  390 (406)
T 1kmj_A          311 HYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEE  390 (406)
T ss_dssp             HHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHH
T ss_pred             HHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHH
Confidence                 3344554444444  6778888774 356788999999999998753           13789999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013008          432 LDQAVEILCKTLPVL  446 (451)
Q Consensus       432 i~~~l~~l~~~l~~~  446 (451)
                      +++++++|+++++.+
T Consensus       391 i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          391 VDRLVTGLQRIHRLL  405 (406)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998765

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.96  E-value=3.1e-28  Score=242.93  Aligned_cols=319  Identities=14%  Similarity=0.081  Sum_probs=203.6

Q ss_pred             EEecCCCEEEeeccCcccccCC--CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc--------CCCeEEe-
Q 013008           92 LYDAEGREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS--------FADRVFF-  160 (451)
Q Consensus        92 l~d~~G~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~e~v~~-  160 (451)
                      +.+..|+++|||.+|.+..+.|  +.+|++.+++.+++++... ..+.......+|.+.+++++        ..++|++ 
T Consensus        20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~   98 (396)
T 2q7w_A           20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT-KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA   98 (396)
T ss_dssp             --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred             HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc-cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence            3333567899999998765566  4679999999998765311 11112222345555555543        1678998 


Q ss_pred             -cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC---C---
Q 013008          161 -SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---G---  233 (451)
Q Consensus       161 -~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---  233 (451)
                       ++||++|++.+++++..+.         ++++|++.+|+||++.......+..             +..++.   +   
T Consensus        99 ~~~g~~~a~~~~~~~~~~~~---------~gd~Vl~~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~  156 (396)
T 2q7w_A           99 QTPGGTGALRVAADFLAKNT---------SVKRVWVSNPSWPNHKSVFNSAGLE-------------VREYAYYDAENHT  156 (396)
T ss_dssp             EESHHHHHHHHHHHHHHHHS---------CCCEEEEEESCCTHHHHHHHHTTCE-------------EEEEECEETTTTE
T ss_pred             ecccchhhHHHHHHHHHHhC---------CCCEEEEcCCCchhHHHHHHHcCCc-------------eEEEecccCCCCC
Confidence             9999999999999776442         5889999999999987554433221             122222   1   


Q ss_pred             -CHHHHHHhcCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc--ccccccccCCCc
Q 013008          234 -NIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAHEHYGIFP  308 (451)
Q Consensus       234 -d~~~le~~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~~~~~~~p  308 (451)
                       |+++|++.+++.  +.+++++...++++|. +++.+++++|+++|++||+++|+||+|++|++.|  .......+...+
T Consensus       157 ~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  235 (396)
T 2q7w_A          157 LDFDALINSLNEAQAGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMH  235 (396)
T ss_dssp             ECHHHHHHHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHC
T ss_pred             cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcC
Confidence             799999999742  3555555545555554 6789999999999999999999999999987654  222232222112


Q ss_pred             c----eeeeccccc-CCcccccccc---cH----HHHhhccCCCccCCCC-CcHHHHHHHHHHHHHhc-C---hHHHHH-
Q 013008          309 D----IMTLAKPLA-GGLPIGAALV---TE----KVASAINYGDHGSTFA-GSPLVCNAAIAVLDKIS-N---PAFLAS-  370 (451)
Q Consensus       309 d----i~t~sK~lg-~G~~iG~v~~---~~----~i~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~-~---~~~~~~-  370 (451)
                      |    +.++||.++ +|+|+||+++   ++    ++++.+... +..+++ .|+++++++.++|+... .   +++.++ 
T Consensus       236 ~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~  314 (396)
T 2q7w_A          236 KELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAA-IRANYSNPPAHGASVVATILSNDALRAIWEQELTDM  314 (396)
T ss_dssp             SCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred             CcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHH-HhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence            2    458899999 6999999986   55    455544321 123443 48999998888875320 0   111111 


Q ss_pred             -------------HHhCCC---Ccceec-ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHH
Q 013008          371 -------------KLARNP---HVKDVR-GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD  433 (451)
Q Consensus       371 -------------~~~~~~---~~~~v~-g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~  433 (451)
                                   .++.++   .+.... ..|+++++.+  ....+.+.|.++||++.++     +|++++. .++++++
T Consensus       315 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~-----~Ris~~~-~~~e~i~  386 (396)
T 2q7w_A          315 RQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL--TKEQVLRLREEFGVYAVAS-----GRVNVAG-MTPDNMA  386 (396)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGGG-CCTTTHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC--CHHHHHHHHHhcCeeecCC-----ceEEEee-cCHHHHH
Confidence                         222222   132223 3366656544  3445556666889999863     5998875 3999999


Q ss_pred             HHHHHHHHHH
Q 013008          434 QAVEILCKTL  443 (451)
Q Consensus       434 ~~l~~l~~~l  443 (451)
                      +++++|++++
T Consensus       387 ~~~~~l~~~l  396 (396)
T 2q7w_A          387 PLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998763

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.96  E-value=3.9e-29  Score=252.63  Aligned_cols=322  Identities=11%  Similarity=0.078  Sum_probs=219.5

Q ss_pred             CEEEeeccCcccccCCCCCHHH--HHHHHHHHhhcccccCCCCCH-HHHHHHHHHhhcc-----C--CCe---EEecCCH
Q 013008           98 REYLDLSSGIAVNALGHGDADW--IKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACS-----F--ADR---VFFSNTG  164 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v--~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~-----~--~e~---v~~~~sG  164 (451)
                      +++|||.+|.+. .+|+ +|.+  .+++.+++++...  ..|... ...++.+.+++++     +  .++   |++++||
T Consensus        47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~  122 (430)
T 2x5f_A           47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEI--FPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL  122 (430)
T ss_dssp             TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGT--SSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred             CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccc--cccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence            568999998764 5774 5666  7777766644111  112111 1345555555554     4  567   9999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC
Q 013008          165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ  243 (451)
Q Consensus       165 ~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  243 (451)
                      ++|++.+++++.           .++|+|++.+|+||++...... .+. ....   .+..+...   ..|+++|+++++
T Consensus       123 ~~al~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~~g~-~~~~---~~~~~~~~---~~d~~~l~~~l~  184 (430)
T 2x5f_A          123 THGLSLVGDLFV-----------NQDDTILLPEHNWGNYKLVFNTRNGA-NLQT---YPIFDKDG---HYTTDSLVEALQ  184 (430)
T ss_dssp             HHHHHHHHHHHC-----------CTTCEEEEESSCCTHHHHHHTTTTCC-EEEE---ECCBCTTS---CBCSHHHHHHHH
T ss_pred             hHHHHHHHHHHh-----------CCCCEEEEcCCcCccHHHHHHHhcCC-eEEE---EeccCccC---CcCHHHHHHHHH
Confidence            999999999764           1589999999999998655433 221 1111   11111000   127899999886


Q ss_pred             C--CCeEE-EEEccccCCCCccccCHHHHHHHHHHHHH-----hCCEEEEeccccCCCcccccc-cc--cccCCCcc---
Q 013008          244 P--GKTAA-VFVEPIQGEGGIYSATKEFLQFLRDACDD-----AGALLVFDEVQCGLGRTGYLW-AH--EHYGIFPD---  309 (451)
Q Consensus       244 ~--~~~aa-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~tg~gr~G~~~-~~--~~~~~~pd---  309 (451)
                      +  .++++ ++++| ++++|. .++.+++++|+++|++     ||+++|+||+|++|.+.|..+ ..  ...+..++   
T Consensus       185 ~~~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (430)
T 2x5f_A          185 SYNKDKVIMILNYP-NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAIL  262 (430)
T ss_dssp             HCCSSEEEEEECSS-CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEE
T ss_pred             hcCCCCEEEEEcCC-CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcce
Confidence            3  24555 55556 555665 5789999999999999     999999999999887666421 11  22232333   


Q ss_pred             ---eeeeccccc-CCcccccccc---cHHHHhhccCCCcc----CCCCCcHHHHHHHHHHHH-H---hcC-hHHHHH---
Q 013008          310 ---IMTLAKPLA-GGLPIGAALV---TEKVASAINYGDHG----STFAGSPLVCNAAIAVLD-K---ISN-PAFLAS---  370 (451)
Q Consensus       310 ---i~t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~~----~t~~~~~~~~aaa~aal~-~---~~~-~~~~~~---  370 (451)
                         +.++||.++ +|+|+||+++   ++++++.+......    .+++.|+++++++.++|+ .   .+. +...++   
T Consensus       263 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  342 (430)
T 2x5f_A          263 PIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKE  342 (430)
T ss_dssp             EEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence               458899998 6899999999   99998887643333    678899999999999998 3   211 001111   


Q ss_pred             -------HHh----CCCCcceeccc-ceeEEEEec-CChHHHHHHHHH-CCceeeecCCCCEEEEeCCCCCCHHHHHHHH
Q 013008          371 -------KLA----RNPHVKDVRGL-GLIIGIEFD-VSATPVVDACRD-SGLLVLTAGKGNVVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       371 -------~~~----~~~~~~~v~g~-G~~~~~~~~-~~~~~~~~~l~~-~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l  436 (451)
                             .++    .. .+..+.+. |+++++.+. .+..++++.|++ +||++.|++. +.+|++++. .+++++++++
T Consensus       343 ~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~~iRis~~~-~~~e~i~~~~  419 (430)
T 2x5f_A          343 RYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNA-TDIRIAFSC-VEKDDIPHVF  419 (430)
T ss_dssp             HHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSS-SEEEEEGGG-SCGGGHHHHH
T ss_pred             HHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC-CeEEEEEec-CCHHHHHHHH
Confidence                   222    22 23333444 566888874 457789999998 9999999744 789998885 4999999999


Q ss_pred             HHHHHHHHHH
Q 013008          437 EILCKTLPVL  446 (451)
Q Consensus       437 ~~l~~~l~~~  446 (451)
                      ++|+++++++
T Consensus       420 ~~l~~~l~~~  429 (430)
T 2x5f_A          420 DSIAKAIDDL  429 (430)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.96  E-value=8.4e-28  Score=242.64  Aligned_cols=323  Identities=15%  Similarity=0.083  Sum_probs=211.6

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHH------------hhcccccCC-CCCHHHHHHHHHHhhcc------CCCeEE
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQA------------NVLTHVSNM-YYSIPQIELAKRLVACS------FADRVF  159 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~------------~~~~~~~~~-~~~~~~~~l~~~l~~~~------~~e~v~  159 (451)
                      .+|||.++..  ++|  +|.+.+++.++.            .....+... +..+.+..+++.+.+.+      ..++++
T Consensus        37 ~~i~l~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~  112 (428)
T 1iay_A           37 GVIQMGLAEN--QLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV  112 (428)
T ss_dssp             SBEECSSCCC--CSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred             ceeeeccccc--hhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence            5788887653  454  478888887532            111111111 12233555555554432      267899


Q ss_pred             ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHH
Q 013008          160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR  239 (451)
Q Consensus       160 ~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le  239 (451)
                      +++|+++|++.++++++           .++++|++.+|+||++........+.....   .+...+..+  ..|+++|+
T Consensus       113 ~~~G~~~ai~~~~~~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~---v~~~~~~~~--~~d~~~l~  176 (428)
T 1iay_A          113 MAGGATGANETIIFCLA-----------DPGDAFLVPSPYYPAFNRDLRWRTGVQLIP---IHCESSNNF--KITSKAVK  176 (428)
T ss_dssp             EEEHHHHHHHHHHHHHC-----------CTTCEEEEESSCCTTHHHHTTTTTCCEEEE---ECCCTTTTT--CCCHHHHH
T ss_pred             EccChHHHHHHHHHHhC-----------CCCCeEEEccCCCcchHHHHHHhcCCEEEE---eecCCccCC--cCCHHHHH
Confidence            99999999999999765           157899999999998764332222221111   111100000  02789999


Q ss_pred             HhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc-------CC
Q 013008          240 KLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-------GI  306 (451)
Q Consensus       240 ~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~-------~~  306 (451)
                      ++++.     .++++|+++..++++|. +++.+++++|+++|++||++||+||+|+++++.|..+ ....+       ++
T Consensus       177 ~~l~~~~~~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (428)
T 1iay_A          177 EAYENAQKSNIKVKGLILTNPSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYC  255 (428)
T ss_dssp             HHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTS
T ss_pred             HHHHHHHhcCCceEEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccC
Confidence            88852     35777666555566665 5689999999999999999999999999876555321 11111       22


Q ss_pred             Ccc----eeeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHHHHH---------
Q 013008          307 FPD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLAS---------  370 (451)
Q Consensus       307 ~pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~---------  370 (451)
                      .+|    +.++||++| +|+|+|++++ ++++++.+...  ..+++.|+++++++.++|+... -+++.++         
T Consensus       256 ~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  333 (428)
T 1iay_A          256 NKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM--SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRH  333 (428)
T ss_dssp             CTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH--HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH--HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            366    568999998 7899999998 68888877532  3346788999998888776321 0011111         


Q ss_pred             -----HHhCCCCcceecc-cceeEEEEecC--------ChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHH
Q 013008          371 -----KLARNPHVKDVRG-LGLIIGIEFDV--------SATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQ  430 (451)
Q Consensus       371 -----~~~~~~~~~~v~g-~G~~~~~~~~~--------~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e  430 (451)
                           .++.+. +..+++ .|+++++++..        ...++.+.|+++ ||++.++..     ++.+|++++ .++++
T Consensus       334 ~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e  411 (428)
T 1iay_A          334 KHFTNGLEVVG-IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDG  411 (428)
T ss_dssp             HHHHHHHHHTT-CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHH
T ss_pred             HHHHHHHHhcC-CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHH
Confidence                 122232 333344 57888888842        234788899886 999988641     268999987 57999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013008          431 ELDQAVEILCKTLPVL  446 (451)
Q Consensus       431 ~i~~~l~~l~~~l~~~  446 (451)
                      ++++++++|++++++.
T Consensus       412 ~i~~~~~~l~~~l~~~  427 (428)
T 1iay_A          412 TVDIALARIRRFVGVE  427 (428)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999988653

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.96  E-value=4.1e-27  Score=234.34  Aligned_cols=319  Identities=19%  Similarity=0.159  Sum_probs=213.4

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~  170 (451)
                      |+.+|||..+.+  .++ .+|.+.+++.++++.....+.  .+..+.+.++++++.+.++    .++|++|+||++|+..
T Consensus        30 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~  106 (385)
T 1b5p_A           30 GVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN  106 (385)
T ss_dssp             TCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred             CCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence            556788888765  344 468999999988865322111  1123346677777765544    5789999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC--CeeEeeCCCHHHHHHhcCCCCeE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      +++.+.           .++|+|++.+|+|+++....... |.....   .+..+  +..    .|+++|++++.+ +++
T Consensus       107 ~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~~~~----~d~~~l~~~l~~-~~~  166 (385)
T 1b5p_A          107 LFQAIL-----------DPGDEVIVLSPYWVSYPEMVRFA-GGVVVE---VETLPEEGFV----PDPERVRRAITP-RTK  166 (385)
T ss_dssp             HHHHHC-----------CTTCEEEEEESCCTHHHHHHHHT-TCEEEE---EECCGGGTTC----CCHHHHHTTCCT-TEE
T ss_pred             HHHHhc-----------CCCCEEEEcCCCchhHHHHHHHc-CCEEEE---eecCcccCCC----CCHHHHHHhcCC-CCE
Confidence            998664           16899999999998776443322 211100   11111  000    278999999975 455


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc--CCCcceeeeccccc-CCccccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY--GIFPDIMTLAKPLA-GGLPIGA  325 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~--~~~pdi~t~sK~lg-~G~~iG~  325 (451)
                      +|++...++++|. +++.+.+++|.++|++||++||+||+|..+...|.......+  +....+.+|||.++ .|+|+||
T Consensus       167 ~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~  245 (385)
T 1b5p_A          167 ALVVNSPNNPTGA-VYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGY  245 (385)
T ss_dssp             EEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEE
T ss_pred             EEEEeCCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEE
Confidence            5554333444454 568999999999999999999999999887554421122222  22223448999998 5899999


Q ss_pred             ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH---hcChHHHHH--------------HHhCCCCcceecc-ccee
Q 013008          326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK---ISNPAFLAS--------------KLARNPHVKDVRG-LGLI  387 (451)
Q Consensus       326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~---~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~  387 (451)
                      +++++++++.+.......+++.+++++.++.++|+.   .  .+++++              .++++ .+....+ .|++
T Consensus       246 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  322 (385)
T 1b5p_A          246 ACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS--RAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFY  322 (385)
T ss_dssp             EECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTE
T ss_pred             EEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEE
Confidence            999999988876544445677889999988888863   1  122211              12222 2222233 3456


Q ss_pred             EEEEec---CChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFD---VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       388 ~~~~~~---~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +++.+.   .+..++.+.|.++||.+.|+..   .+.+|+++.  ++++++++++++|.++++
T Consensus       323 ~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          323 VLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG  383 (385)
T ss_dssp             EEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred             EEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            666663   3577899999999999988632   368999755  799999999999988764

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.96  E-value=7.7e-28  Score=237.14  Aligned_cols=302  Identities=16%  Similarity=0.160  Sum_probs=210.8

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a  175 (451)
                      +++|||.+|..  ++|+. |.+  +    +...    ..|+.....++.+.++++++  .++|++++|+++|++.+++++
T Consensus        29 ~~~i~l~~~~~--~~~~~-~~v--a----~~~~----~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~   95 (356)
T 1fg7_A           29 NGDVWLNANEY--PTAVE-FQL--T----QQTL----NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF   95 (356)
T ss_dssp             TCSEECSSCCC--SSCCC-CCC--C----CCCT----TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred             CceEEeeCCCC--CCCCC-HhH--h----hhhh----ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH
Confidence            57899999864  68864 555  2    2211    12222225678888888887  579999999999999999976


Q ss_pred             HHHhhhcCCCCCCCC-ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008          176 RKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP  254 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep  254 (451)
                      .           .++ ++|++.+|+||++.......+.... .   .+...+..    .|++++++.++  ++++|+++.
T Consensus        96 ~-----------~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~~----~d~~~l~~~i~--~~~~v~l~~  154 (356)
T 1fg7_A           96 C-----------EPGKDAILYCPPTYGMYSVSAETIGVECR-T---VPTLDNWQ----LDLQGISDKLD--GVKVVYVCS  154 (356)
T ss_dssp             C-----------CTTTCEEEECSSSCTHHHHHHHHHTCEEE-E---CCCCTTSC----CCHHHHHTSCT--TEEEEEEES
T ss_pred             h-----------CCCCCEEEEeCCChHHHHHHHHHcCCEEE-E---eeCCCCCC----CCHHHHHHHhc--CCCEEEEeC
Confidence            4           146 8999999999998765544332211 1   11111111    27999999886  567777766


Q ss_pred             ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc-cccCCCcceeeeccccc-CCcccccccccHHH
Q 013008          255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYGIFPDIMTLAKPLA-GGLPIGAALVTEKV  332 (451)
Q Consensus       255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i  332 (451)
                      +++++|. ..+.+++++|+++|+ ||+++|+||+|++|+........ +.++....+.++||.+| +|+|+||+++++++
T Consensus       155 p~nptG~-~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~  232 (356)
T 1fg7_A          155 PNNPTGQ-LINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEV  232 (356)
T ss_dssp             SCTTTCC-CCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH
T ss_pred             CCCCCCC-CCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHH
Confidence            6666675 568899999999999 99999999999988632222221 22333445668999998 78999999999999


Q ss_pred             HhhccCCCccCCCCCcHHHHHHHHHHHHHhcC---hHHHHH----------HHhCCCC-cceecccceeEEEEecCChHH
Q 013008          333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISN---PAFLAS----------KLARNPH-VKDVRGLGLIIGIEFDVSATP  398 (451)
Q Consensus       333 ~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~----------~~~~~~~-~~~v~g~G~~~~~~~~~~~~~  398 (451)
                      ++.+...  ..+|+.|+++++++.++|+....   +...++          .+++++. ....++.|.++++.+. +..+
T Consensus       233 ~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~  309 (356)
T 1fg7_A          233 INLLMKV--IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-ASSA  309 (356)
T ss_dssp             HHHHHHH--SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-THHH
T ss_pred             HHHHHHh--cCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-CHHH
Confidence            9887642  34567899999999888863210   111111          2233453 2334567888888885 5778


Q ss_pred             HHHHHHHCCceeee-cCC---CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          399 VVDACRDSGLLVLT-AGK---GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       399 ~~~~l~~~Gv~~~~-~~~---~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      +.+.|.++||++.+ +..   .+.+|++++   +++++++++++|++
T Consensus       310 l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          310 VFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA  353 (356)
T ss_dssp             HHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence            99999999999998 421   358999865   68999999998875

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.96  E-value=4.9e-27  Score=236.94  Aligned_cols=287  Identities=12%  Similarity=0.079  Sum_probs=203.3

Q ss_pred             CCHHHHHHHHHHhhccC--C---------CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhh
Q 013008          138 YSIPQIELAKRLVACSF--A---------DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMG  206 (451)
Q Consensus       138 ~~~~~~~l~~~l~~~~~--~---------e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~  206 (451)
                      ..+.+.++++++.+.++  .         ++|++|+|+++|+..+++++.           .++|.|++.+|+|+++...
T Consensus        80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-----------~~gd~Vlv~~p~y~~~~~~  148 (425)
T 2r2n_A           80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-----------NPGDNVLLDEPAYSGTLQS  148 (425)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-----------CCCCEEEEeCCCcHHHHHH
Confidence            34457777777776555  2         589999999999999999764           2689999999999987654


Q ss_pred             hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----------CCeEEEEEccc-cCCCCccccCHHHHHHHHH
Q 013008          207 ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----------GKTAAVFVEPI-QGEGGIYSATKEFLQFLRD  274 (451)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----------~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~  274 (451)
                      .... +.....   .+...+ .    .|+++|+++++.           .++++|++.|. ++++| .+++.+++++|++
T Consensus       149 ~~~~-g~~~~~---v~~~~~-~----~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG-~~~~~~~l~~l~~  218 (425)
T 2r2n_A          149 LHPL-GCNIIN---VASDES-G----IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTG-NSLTSERKKEIYE  218 (425)
T ss_dssp             HGGG-TCEEEE---ECEETT-E----ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTC-CCCCHHHHHHHHH
T ss_pred             HHHc-CCEEEE---eCcCCC-C----CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCC-CcCCHHHHHHHHH
Confidence            4322 211111   011111 0    278999999862           35778888764 44455 4678999999999


Q ss_pred             HHHHhCCEEEEeccccCCCccccc----ccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHH
Q 013008          275 ACDDAGALLVFDEVQCGLGRTGYL----WAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPL  350 (451)
Q Consensus       275 l~~~~g~llI~DEv~tg~gr~G~~----~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~  350 (451)
                      +|++||++||+||+|+++.+.|..    ...+..+..+.+.+|||++++|+|+||+++++++++.+.......+++.|++
T Consensus       219 ~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~  298 (425)
T 2r2n_A          219 LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPSTF  298 (425)
T ss_dssp             HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSCHH
T ss_pred             HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCCHH
Confidence            999999999999999987665532    2222223445567999999989999999999999988865445567888999


Q ss_pred             HHHHHHHHHHHhcCh---HHHHH---------------HHhCCCCc-ce-ecccceeEEEEecC--ChHH-HHHHHHHCC
Q 013008          351 VCNAAIAVLDKISNP---AFLAS---------------KLARNPHV-KD-VRGLGLIIGIEFDV--SATP-VVDACRDSG  407 (451)
Q Consensus       351 ~~aaa~aal~~~~~~---~~~~~---------------~~~~~~~~-~~-v~g~G~~~~~~~~~--~~~~-~~~~l~~~G  407 (451)
                      +++++.++|+.+.++   ++.++               +.+.+|.+ .. .+..|+++|+.+..  +..+ +.+.|.++|
T Consensus       299 ~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~g  378 (425)
T 2r2n_A          299 NQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMG  378 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTT
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCC
Confidence            999999988753211   11111               22224433 22 24567888988842  4455 578888999


Q ss_pred             ceeeecCC--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          408 LLVLTAGK--------GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       408 v~~~~~~~--------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |.+.|+..        .+.+|++++. .+++++++++++|.+++++.
T Consensus       379 v~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          379 VLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             EECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence            99988531        2679998764 59999999999999998753

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.96  E-value=3.2e-28  Score=244.37  Aligned_cols=324  Identities=11%  Similarity=0.012  Sum_probs=208.0

Q ss_pred             CCCEEEeeccCcccccCCC--CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-C-------CCeEEe--cCC
Q 013008           96 EGREYLDLSSGIAVNALGH--GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F-------ADRVFF--SNT  163 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~e~v~~--~~s  163 (451)
                      +|+.+|||..|.+....|+  .+|.+.+++.+++++......+.......+|.+.+++++ +       .++|++  |+|
T Consensus        28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g  107 (412)
T 1ajs_A           28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG  107 (412)
T ss_dssp             CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred             CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence            3677899999986555555  458999999988732111111112222345555555544 2       589999  999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCC-----ceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCC--CCeeEeeCCCH
Q 013008          164 GTEANEAAIKFARKFQRHSNPDSKEPA-----TEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVM--PGVNFVEYGNI  235 (451)
Q Consensus       164 G~eA~~~al~~a~~~~~~~~~~~~~~~-----~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~d~  235 (451)
                      |++|++.+++++..+.         ++     ++|++.+|+||++.......+.. .. .   .+..  .+..    .|+
T Consensus       108 g~~a~~~~~~~~~~~~---------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~-~---~~~~~~~~~~----~d~  170 (412)
T 1ajs_A          108 GTGALRIGAEFLARWY---------NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIR-S---YRYWDTEKRG----LDL  170 (412)
T ss_dssp             HHHHHHHHHHHHHHHS---------SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEE-E---EECEETTTTE----ECH
T ss_pred             cHHHHHHHHHHHHHhC---------cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeE-E---EeeecCCCCc----cCH
Confidence            9999999988665442         46     89999999999987554443322 11 1   0110  0111    178


Q ss_pred             HHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc---ccccccccCCCcc-
Q 013008          236 EATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLWAHEHYGIFPD-  309 (451)
Q Consensus       236 ~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~~~~~~~~~pd-  309 (451)
                      ++|++.+.+  .++.++++...++++|. +++.+++++|+++|++||++||+||+|++|++.|   .......+...+| 
T Consensus       171 ~~l~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
T 1ajs_A          171 QGFLSDLENAPEFSIFVLHACAHNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFE  249 (412)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCc
Confidence            999998863  24555544444444454 6799999999999999999999999999998775   3323332211233 


Q ss_pred             ---eeeecccccC-Ccccccccc---cHHHHh----hccCCCccCCCC-CcHHHHHHHHHHHHHhc-----C---hHHHH
Q 013008          310 ---IMTLAKPLAG-GLPIGAALV---TEKVAS----AINYGDHGSTFA-GSPLVCNAAIAVLDKIS-----N---PAFLA  369 (451)
Q Consensus       310 ---i~t~sK~lg~-G~~iG~v~~---~~~i~~----~~~~~~~~~t~~-~~~~~~aaa~aal~~~~-----~---~~~~~  369 (451)
                         +.++||++++ |+|+||+++   ++++++    .+.. .+..+++ .|+++++++.++|+...     .   ++..+
T Consensus       250 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  328 (412)
T 1ajs_A          250 LFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQK-IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD  328 (412)
T ss_dssp             EEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH-HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHH-HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence               5589999997 999999998   887443    3332 1334555 58999999998887431     0   11111


Q ss_pred             H----------HHhCCC---Ccceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHH
Q 013008          370 S----------KLARNP---HVKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       370 ~----------~~~~~~---~~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~  435 (451)
                      +          .+++++   .+..+.+ .|+++++.++  ...+...+.++||++.++     +|++++. +++++++++
T Consensus       329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gv~v~~~-----~Ris~~~-~~~~~i~~~  400 (412)
T 1ajs_A          329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN--PKQVEYLINQKHIYLLPS-----GRINMCG-LTTKNLDYV  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC--HHHHHHHHHTTCEECCTT-----SEEEGGG-CCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC--HHHHHHHHHhCCEEecCC-----cEEEeee-CCHHHHHHH
Confidence            1          222232   1322233 4566655443  344444555789999864     5887663 489999999


Q ss_pred             HHHHHHHHHHH
Q 013008          436 VEILCKTLPVL  446 (451)
Q Consensus       436 l~~l~~~l~~~  446 (451)
                      +++|+++++++
T Consensus       401 ~~~l~~~l~~~  411 (412)
T 1ajs_A          401 ATSIHEAVTKI  411 (412)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.95  E-value=9.6e-28  Score=242.52  Aligned_cols=327  Identities=12%  Similarity=0.074  Sum_probs=209.1

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCCC-CHHHHHHHHHHhhcc----C--CCeEEecCCHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMYY-SIPQIELAKRLVACS----F--ADRVFFSNTGTE  166 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~-~~~~~~l~~~l~~~~----~--~e~v~~~~sG~e  166 (451)
                      +|+++|||.++.+.   -..+|.|.+|+.+++++...  ....+. .....+|.+.+++++    +  .++|++++|+++
T Consensus        54 ~~~~~i~l~~~~~~---~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~  130 (432)
T 3ei9_A           54 PDAQVISLGIGDTT---EPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKC  130 (432)
T ss_dssp             TTCCCEECSSCCCC---SCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred             CCCCeEEccCCCCC---CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHH
Confidence            57899999999763   35899999999999986432  111222 222455666666653    3  679999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC-CC
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PG  245 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~  245 (451)
                      ++..+ ..+.   +        ++|.|++.+|+|+++............+.. .......+..++.++.+.+...++ ..
T Consensus       131 al~~l-~~l~---~--------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~  197 (432)
T 3ei9_A          131 DISRL-QVMF---G--------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFFPDLSTVG  197 (432)
T ss_dssp             HHHHH-HHHH---C--------TTCCEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTSCCGGGCC
T ss_pred             HHHHH-HHHc---C--------CCCEEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCcCChhhCC
Confidence            99874 3322   1        689999999999998765544332111100 000001233444432111111111 23


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc----CCCcceeeeccccc-CC
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY----GIFPDIMTLAKPLA-GG  320 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~----~~~pdi~t~sK~lg-~G  320 (451)
                      ++++|+++..++++|. +++.+++++|+++|++||++||+||+|++|...+.......+    +....+.++||++| +|
T Consensus       198 ~~~~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G  276 (432)
T 3ei9_A          198 RTDIIFFCSPNNPTGA-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG  276 (432)
T ss_dssp             CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred             CCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence            4555555555555564 678999999999999999999999999987554433222222    23344668999998 79


Q ss_pred             cccccccccHHH--------HhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCc
Q 013008          321 LPIGAALVTEKV--------ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHV  378 (451)
Q Consensus       321 ~~iG~v~~~~~i--------~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~  378 (451)
                      +|+||+++++++        ++.+.......+++.++++++++.++++... .+++++              .++++. +
T Consensus       277 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~  354 (432)
T 3ei9_A          277 VRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG-LEAMHKVIGFYKENTNIIIDTFTSLG-Y  354 (432)
T ss_dssp             TCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred             cceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHCC-c
Confidence            999999998887        5555433333455678999998888874210 111111              222232 3


Q ss_pred             ceec-ccceeEEEEec-CChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          379 KDVR-GLGLIIGIEFD-VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       379 ~~v~-g~G~~~~~~~~-~~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .... ..|.++++.+. ....++++.|+++ ||++.|+..     .+++|++  +..++|+|++++++|++--
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl~~~~  425 (432)
T 3ei9_A          355 DVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRFKQLY  425 (432)
T ss_dssp             CEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred             eecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHh
Confidence            3333 35778888884 4567788888865 999987521     3678987  4669999999999998754

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.95  E-value=2.8e-28  Score=245.71  Aligned_cols=329  Identities=11%  Similarity=0.016  Sum_probs=223.8

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHH--HHHhhcccccCCC--CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHH--HH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVV--DQANVLTHVSNMY--YSIPQIELAKRLVACSF--ADRVFFSNTGTEANE--AA  171 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~--~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~--~a  171 (451)
                      .|||..|.+...+...+|.+.+++.  +.++. ......|  ......+|.+.++++++  .++|++|+|+++|+.  .+
T Consensus        27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~  105 (423)
T 3ez1_A           27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMD-GLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL  105 (423)
T ss_dssp             CEESCCCCCCHHHHHTTGGGGGSCCGGGCEET-TEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred             eEecCCCCCChHhCCCcHHHHHHHhhhHHhhc-chhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence            4788777664434445667877775  43332 1111222  22235688888888886  679999999999997  88


Q ss_pred             HHHHHHHhhhcCCCCCCC--------CceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC
Q 013008          172 IKFARKFQRHSNPDSKEP--------ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ  243 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~--------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  243 (451)
                      ++++....        ++        +++|++.+|+|+++.......+.... .   .+...+.     .|+++|+++++
T Consensus       106 ~~~l~~~~--------~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---v~~~~~g-----~d~~~l~~~l~  168 (423)
T 3ez1_A          106 TFALLHGV--------RGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELL-T---VDMQSDG-----PDVDAVERLAG  168 (423)
T ss_dssp             HHHHHTCC--------TTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEE-E---EEEETTE-----ECHHHHHHHHH
T ss_pred             HHHHhccC--------CCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEE-e---ccCCCCC-----CCHHHHHHHHh
Confidence            88665200        01        58999999999988655433322111 0   0111110     28999999995


Q ss_pred             -CCCeEEEEEccccCCCCccccCHHHHHHHHHHH-HHhCCEEEEeccccCCCccc-c------cccc----cccCCCcce
Q 013008          244 -PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTG-Y------LWAH----EHYGIFPDI  310 (451)
Q Consensus       244 -~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tg~gr~G-~------~~~~----~~~~~~pdi  310 (451)
                       ..++++|+++|..+|+++.+++.+.+++|+++| ++||+++|+||+|..+...+ .      .+..    +..+....+
T Consensus       169 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  248 (423)
T 3ez1_A          169 TDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF  248 (423)
T ss_dssp             SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred             hCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence             457889988875444434567888999999999 99999999999998543222 1      1111    123344557


Q ss_pred             eeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH---------------HHh
Q 013008          311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFLAS---------------KLA  373 (451)
Q Consensus       311 ~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~---------------~~~  373 (451)
                      .+|||.+.+|+|+||+++++++++.+.......+++.+++++.++.++|+.+..  ..++++               +.+
T Consensus       249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  328 (423)
T 3ez1_A          249 ASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRA  328 (423)
T ss_dssp             EESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999767999999999999999887655667788899999999888875111  112111               222


Q ss_pred             CCCC----cce-ecccceeEEEEec-CChHHHHHHHHHCCceeeecC---------CCCEEEEeCCCCCCHHHHHHHHHH
Q 013008          374 RNPH----VKD-VRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEI  438 (451)
Q Consensus       374 ~~~~----~~~-v~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~~~~t~e~i~~~l~~  438 (451)
                      .++.    +.. ....|+++++.+. .....+.+.|.++||++.|++         ..+.+||+++.. +++++++++++
T Consensus       329 ~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~  407 (423)
T 3ez1_A          329 ELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQV  407 (423)
T ss_dssp             HHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHH
T ss_pred             hcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHH
Confidence            2222    221 2345788899884 356788888999999999832         136899988655 99999999999


Q ss_pred             HHHHHHHHh
Q 013008          439 LCKTLPVLD  447 (451)
Q Consensus       439 l~~~l~~~~  447 (451)
                      |.++++++.
T Consensus       408 l~~~l~~~~  416 (423)
T 3ez1_A          408 VAACIRLAT  416 (423)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.95  E-value=2.9e-27  Score=235.11  Aligned_cols=313  Identities=14%  Similarity=0.098  Sum_probs=219.6

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC----CCCC--HHHHHHHHHHhhccC--CCeEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN----MYYS--IPQIELAKRLVACSF--ADRVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~----~~~~--~~~~~l~~~l~~~~~--~e~v~~~~sG~eA  167 (451)
                      ++..|+|..      ..|+.+|++.+++.+++.+..+...    .+..  ....++++.++++++  .+++++++||++|
T Consensus        15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   88 (390)
T 1elu_A           15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG   88 (390)
T ss_dssp             TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred             CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence            355666643      2578889999999999876432111    1222  447889999999987  4589999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh---hccCCCCcCCCCcCCC--CCeeEeeCCCHHHHHHhc
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLI  242 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l  242 (451)
                      ++.++++++  .        .++++|++.+++||+......   ...+.....   .+..  .+.    ..|+++|++.+
T Consensus        89 ~~~~~~~~~--~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~~----~~d~~~l~~~i  151 (390)
T 1elu_A           89 CDIVLWGLD--W--------HQGDEILLTDCEHPGIIAIVQAIAARFGITYRF---FPVAATLNQ----GDAAAVLANHL  151 (390)
T ss_dssp             HHHHHHHSC--C--------CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEE---ECCGGGSSS----SCHHHHHHTTC
T ss_pred             HHHHHhCCC--C--------CCCCEEEEecCcccHHHHHHHHHHHHhCcEEEE---EcCCCCCCc----cchHHHHHHhc
Confidence            999999763  1        158899999999998764321   111211110   0110  000    12789999999


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHH----HhCCEEEEeccccCCCcccccccccccCCCcceee--eccc
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD----DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKP  316 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~  316 (451)
                      ++ ++++|+++++++++|.+.+    +++|+++|+    +||+++|+||+|+ +|...    .+.....+|+++  ++|.
T Consensus       152 ~~-~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~----~~~~~~~~d~~~~s~~K~  221 (390)
T 1elu_A          152 GP-KTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP----LDFSRLEVDYYAFTGHKW  221 (390)
T ss_dssp             CT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC----CCTTTSCCSEEEEESSST
T ss_pred             CC-CceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC----CChhhcCCCEEEcccccc
Confidence            74 6888999998888888776    999999999    9999999999996 54332    111233567765  8997


Q ss_pred             ccCCcccccccccHHHHhhccCCC----------------------ccCCCCCcHHHHHHHHHHHHHhcChH----HHHH
Q 013008          317 LAGGLPIGAALVTEKVASAINYGD----------------------HGSTFAGSPLVCNAAIAVLDKISNPA----FLAS  370 (451)
Q Consensus       317 lg~G~~iG~v~~~~~i~~~~~~~~----------------------~~~t~~~~~~~~aaa~aal~~~~~~~----~~~~  370 (451)
                      +.+|.++|++++++++++.+.+..                      ...+.+.++++++++.++++.+.+.+    ..++
T Consensus       222 ~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~  301 (390)
T 1elu_A          222 FAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQA  301 (390)
T ss_dssp             TCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             ccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            777788999999999888776421                      11123457788887778887654322    1111


Q ss_pred             ----------HHhCCCCccee---cccceeEEEEec--CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHH
Q 013008          371 ----------KLARNPHVKDV---RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       371 ----------~~~~~~~~~~v---~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~  435 (451)
                                .+++++.+..+   ++.|.++.+.+.  ....++.+.|.++||.+.++...+.+|++++..+++++++++
T Consensus       302 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~  381 (390)
T 1elu_A          302 ICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHL  381 (390)
T ss_dssp             HHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHH
Confidence                      23334444333   456788888873  357789999999999999875347899999899999999999


Q ss_pred             HHHHHH
Q 013008          436 VEILCK  441 (451)
Q Consensus       436 l~~l~~  441 (451)
                      +++|++
T Consensus       382 ~~~l~~  387 (390)
T 1elu_A          382 LARLAD  387 (390)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            999875

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=2.4e-26  Score=228.52  Aligned_cols=312  Identities=14%  Similarity=0.078  Sum_probs=206.1

Q ss_pred             CCCHHHHHHHHHHHhhcccccCCC--CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhc--CCCCC
Q 013008          114 HGDADWIKAVVDQANVLTHVSNMY--YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHS--NPDSK  187 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~--~~~~~  187 (451)
                      ..+|++.+++.+++.+....+..+  ......++++++++.++  .+++++++||++|+..++++++......  .+...
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~  120 (397)
T 3f9t_A           41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK  120 (397)
T ss_dssp             CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence            367899999999887532221112  12336688899999887  6689999999999999999887641100  00000


Q ss_pred             CCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008          188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIY  262 (451)
Q Consensus       188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~~~G~~  262 (451)
                      .++++|++.+++|+++....... +.            .+..+|.+     |+++|++++++.++++|+++++++++|.+
T Consensus       121 ~~gd~vl~~~~~~~~~~~~~~~~-g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~  187 (397)
T 3f9t_A          121 NEHPKIIVPITAHFSFEKGREMM-DL------------EYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTI  187 (397)
T ss_dssp             CSSCEEEEETTCCTHHHHHHHHH-TC------------EEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCB
T ss_pred             CCCeEEEECCcchhHHHHHHHHc-Cc------------eeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCC
Confidence            14789999999998865443332 21            12233332     89999999975356677777777777877


Q ss_pred             ccCHHHHHHHHHHHHHhCCEEEEeccccCCC--cccc---------cccccccCCCcceeeecccccCCcccccccccH-
Q 013008          263 SATKEFLQFLRDACDDAGALLVFDEVQCGLG--RTGY---------LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTE-  330 (451)
Q Consensus       263 ~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g--r~G~---------~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~-  330 (451)
                      .+    +++|+++|++||++||+||+|+++.  ..+.         .+.... ++.+.+.+++|.+++|+++|++++++ 
T Consensus       188 ~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~  262 (397)
T 3f9t_A          188 DN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDI  262 (397)
T ss_dssp             CC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSG
T ss_pred             CC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCH
Confidence            66    9999999999999999999998642  2332         222333 55555567889888888999988754 


Q ss_pred             HHHhhccC---CCc--------cCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecccceeEE
Q 013008          331 KVASAINY---GDH--------GSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRGLGLIIG  389 (451)
Q Consensus       331 ~i~~~~~~---~~~--------~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g~G~~~~  389 (451)
                      .+.+.+..   ...        +.+.+.+++++.++++.+....-++..++          .++++.......+.+.+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  342 (397)
T 3f9t_A          263 GYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVA  342 (397)
T ss_dssp             GGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEE
T ss_pred             HHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEE
Confidence            45544421   111        12223356666666665542211122221          2222221111234566667


Q ss_pred             EEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          390 IEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       390 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.+. ...++.+.|.++||++.++..++.+|++++..+++|++++++++|+++++
T Consensus       343 ~~~~-~~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          343 IEDE-DYKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             EECT-THHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             EEeC-CHHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            7664 36789999999999999876558899999999999999999999998864

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.95  E-value=3.8e-27  Score=237.02  Aligned_cols=326  Identities=11%  Similarity=0.034  Sum_probs=215.9

Q ss_pred             CCEEEeeccCcc---cccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccCCC---eEEecCCHHHHH
Q 013008           97 GREYLDLSSGIA---VNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSFAD---RVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~---~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~e---~v~~~~sG~eA~  168 (451)
                      |..+|||..|.+   ...+. .+|.+.+++.+........+  ..+..+.+.++++++....+.+   ++++|+||++|+
T Consensus        37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al  115 (418)
T 3rq1_A           37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGI  115 (418)
T ss_dssp             GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHH
T ss_pred             CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHH
Confidence            456788888765   12222 57788888776543221111  1123334666777666665667   999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC----
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP----  244 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~----  244 (451)
                      ..+++.+.           .++|+|++.+|+|+++.......+.... .   .+..+...   ..|+++|++.+++    
T Consensus       116 ~~~~~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~~---~~d~~~l~~~l~~~~~~  177 (418)
T 3rq1_A          116 HHLIHNYT-----------EPGDEVLTADWYWGAYRVICSDTGRTLV-T---YSLFDEHN---NFNHEAFQNRVNELAAK  177 (418)
T ss_dssp             HHHHHHHS-----------CTTCEEEEESSCCTHHHHHHHHTTCEEE-E---ECSBCTTS---SBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-----------CCCCEEEECCCCchhHHHHHHHcCCEEE-E---EeeeCCCC---CcCHHHHHHHHHHhhcc
Confidence            99999654           2689999999999988755443332211 1   11100000   1278999998863    


Q ss_pred             CCeEEEEEccc-cCCCCccccCHHHHHHHHHHHH------HhCCEEEEeccccCCCcccc---cccccccCCCcc---ee
Q 013008          245 GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACD------DAGALLVFDEVQCGLGRTGY---LWAHEHYGIFPD---IM  311 (451)
Q Consensus       245 ~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tg~gr~G~---~~~~~~~~~~pd---i~  311 (451)
                      +..++++++.. ++++|. +++.+.+++|+++|+      +||+++|+||+|.+|++.|.   .+.....++.+|   ++
T Consensus       178 ~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~  256 (418)
T 3rq1_A          178 QTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCV  256 (418)
T ss_dssp             CSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEE
T ss_pred             CCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEE
Confidence            44546666644 666665 568888999999999      89999999999999987764   222333455555   22


Q ss_pred             --eeccccc-CCcccccccc---cHHHHhhccCCCc----cCCCCCcHHHHHHHHHHHHHhcC-hHHH-------HH---
Q 013008          312 --TLAKPLA-GGLPIGAALV---TEKVASAINYGDH----GSTFAGSPLVCNAAIAVLDKISN-PAFL-------AS---  370 (451)
Q Consensus       312 --t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~----~~t~~~~~~~~aaa~aal~~~~~-~~~~-------~~---  370 (451)
                        +|||+++ +|+|+||+++   ++++++.+.....    ....+.++++++++.++|+.... +.|.       ++   
T Consensus       257 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  336 (418)
T 3rq1_A          257 CYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRD  336 (418)
T ss_dssp             EEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence              7999998 6899999998   8999888754211    11235788888888877742100 0011       11   


Q ss_pred             -------HHhCCCCcceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          371 -------KLARNPHVKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       371 -------~~~~~~~~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                             .++.+ .+..+.+ .|+++++.+ .+..++++.|.++||++.|++  +.+||++. .++++++++++++|+++
T Consensus       337 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~--~~iRis~~-~~~~~~i~~~~~~l~~~  411 (418)
T 3rq1_A          337 RADIFKQEAAQV-GLPMLPYRGGFFITIPT-DSANAICEELKKEHIYVIALA--NGIRIAAC-GIPKCQMTGLAEKIYNA  411 (418)
T ss_dssp             HHHHHHHHHHHH-TCCCCCCCSSSEEEEEC-TTHHHHHHHHHHTTEECEECS--SEEEEEGG-GSCHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCCCCCCCceEEEEcCC-CCHHHHHHHHHhCCEEEecCC--CCeEEEEe-cCCHHHHHHHHHHHHHH
Confidence                   11222 1222333 355666655 357789999999999999974  67999755 46999999999999999


Q ss_pred             HHHHh
Q 013008          443 LPVLD  447 (451)
Q Consensus       443 l~~~~  447 (451)
                      ++++.
T Consensus       412 l~~~~  416 (418)
T 3rq1_A          412 MKSLG  416 (418)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            98764

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.95  E-value=1.3e-27  Score=240.89  Aligned_cols=338  Identities=12%  Similarity=0.053  Sum_probs=217.9

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHh-hcccccCCCCCH-HHHHHHHHHhhccC--CCeEEecCCHHHHH--HHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVSNMYYSI-PQIELAKRLVACSF--ADRVFFSNTGTEAN--EAAIK  173 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~~~~~~-~~~~l~~~l~~~~~--~e~v~~~~sG~eA~--~~al~  173 (451)
                      +|||..|.+...+-..+|.+++++.+++. ........|+.. ...+|.+.++++++  .++|++|+|+++|+  ..+++
T Consensus        34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~  113 (422)
T 3d6k_A           34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW  113 (422)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred             eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence            68888876632212245567777765431 111011122222 25677778887776  67999999999997  56666


Q ss_pred             HHHHHhhhcCCCCC-C-CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008          174 FARKFQRHSNPDSK-E-PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF  251 (451)
Q Consensus       174 ~a~~~~~~~~~~~~-~-~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi  251 (451)
                      ++..... .+.... + .+++|++.+|+|+++.......+.... .   .+...+.     .|+++|++++++.++++|+
T Consensus       114 ~l~~~~~-~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~-~---v~~~~~g-----~d~~~l~~~l~~~~~~~v~  183 (422)
T 3d6k_A          114 SYTWGNN-DSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMI-N---VPMTDEG-----PDMGVVRELVKDPQVKGMW  183 (422)
T ss_dssp             HHHHCCT-TCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEE-E---EEEETTE-----ECHHHHHHHHTSTTEEEEE
T ss_pred             HhcCccc-ccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEE-e---cCCCCCC-----CCHHHHHHHHhcCCCeEEE
Confidence            5542000 000000 0 034799999999988755433322111 1   1111110     2799999999755688888


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHH-HhCCEEEEeccccC--CCcccccc-cc-------cccCCCcceeeecccccCC
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACD-DAGALLVFDEVQCG--LGRTGYLW-AH-------EHYGIFPDIMTLAKPLAGG  320 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tg--~gr~G~~~-~~-------~~~~~~pdi~t~sK~lg~G  320 (451)
                      +.|..+|+++.+++.+++++|.++|+ +||+++|+||+|..  |+..|..+ ..       +..+..+++.+|||..++|
T Consensus       184 ~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G  263 (422)
T 3d6k_A          184 TVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAG  263 (422)
T ss_dssp             ECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTT
T ss_pred             EcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcc
Confidence            66654443335779999999999999 99999999999974  65444211 11       1334566677999996679


Q ss_pred             cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHHHHH---------------HHhC---CCCccee
Q 013008          321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLAS---------------KLAR---NPHVKDV  381 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~---------------~~~~---~~~~~~v  381 (451)
                      +|+||+++++++++.+.......+++.|+++++++.++|+... -+++.++               +.+.   ++.+..+
T Consensus       264 lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~  343 (422)
T 3d6k_A          264 SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT  343 (422)
T ss_dssp             SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEC
T ss_pred             cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEe
Confidence            9999999999999888654455667889999999988875310 0122211               2221   1223222


Q ss_pred             -cccceeEEEEecC-ChHHHHHHHHHCCceeeecCC---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          382 -RGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAGK---------GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       382 -~g~G~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~~~---------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                       ...|+++|+.+.. ....+.+.|.++||.+.|++.         .+.+||+++. .+++++++++++|+++++++..
T Consensus       344 ~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~  420 (422)
T 3d6k_A          344 SPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL  420 (422)
T ss_dssp             CCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence             3357888988853 466788888899999988321         2678997776 7999999999999999987643

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.95  E-value=3.5e-26  Score=229.52  Aligned_cols=323  Identities=13%  Similarity=0.094  Sum_probs=221.9

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc----cCCCC---CHHHHHHHHHHhhccCC---CeEEecCCHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----SNMYY---SIPQIELAKRLVACSFA---DRVFFSNTGT  165 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~~~---~~~~~~l~~~l~~~~~~---e~v~~~~sG~  165 (451)
                      +|+++++|..+..    ++.+|.+.+++.+++++....    ...+.   .....+++++++++++.   +++++++||+
T Consensus        25 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t  100 (420)
T 1t3i_A           25 NGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT  100 (420)
T ss_dssp             TTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred             CCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence            6778888877655    368899999999998764211    01111   23367899999999886   8999999999


Q ss_pred             HHHHHHHHHHHHH-hhhcCCCCCCCCceEEEEcCCccCChhh---hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHh
Q 013008          166 EANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMG---ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKL  241 (451)
Q Consensus       166 eA~~~al~~a~~~-~~~~~~~~~~~~~~ii~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~  241 (451)
                      +|++.++++++.. .        .++++|++.+++||+....   .....+.....   .+...+..    .|+++|+++
T Consensus       101 ~a~~~~~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~----~d~~~l~~~  165 (420)
T 1t3i_A          101 EAINLVAYSWGMNNL--------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKF---VQLDEQES----FDLEHFKTL  165 (420)
T ss_dssp             HHHHHHHHHTHHHHC--------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEE---ECBCTTSS----BCHHHHHHH
T ss_pred             HHHHHHHHHhhhccc--------CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEE---eccCCCCC----cCHHHHHHh
Confidence            9999999987421 1        1588999999999996421   11111211100   11111110    389999999


Q ss_pred             cCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccC
Q 013008          242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG  319 (451)
Q Consensus       242 l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~  319 (451)
                      +++ ++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...  .....++  +|++++  +|.+++
T Consensus       166 l~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~di~~~s~sK~~~~  235 (420)
T 1t3i_A          166 LSE-KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLID--CDWLVASGHKMCAP  235 (420)
T ss_dssp             CCT-TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CSEEEEEGGGTTSC
T ss_pred             hCC-CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--CchhhcC--CCEEEEehhhhcCC
Confidence            975 6889999998888888776    9999999999999999999996 33321  1222333  677755  596653


Q ss_pred             CcccccccccHHHHhhccCCCcc--------------------CCCCCcHHHHHHHHH-HHHHhcC---hHHHHH-----
Q 013008          320 GLPIGAALVTEKVASAINYGDHG--------------------STFAGSPLVCNAAIA-VLDKISN---PAFLAS-----  370 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~~~~~--------------------~t~~~~~~~~aaa~a-al~~~~~---~~~~~~-----  370 (451)
                       .++|++++++++++.+......                    .+.+.+++.++++++ +++.+.+   +.+.++     
T Consensus       236 -~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  314 (420)
T 1t3i_A          236 -TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELT  314 (420)
T ss_dssp             -TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             -CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             3389999999999887654321                    123456666666554 6666532   222222     


Q ss_pred             -----HHhCCCCcceecc------cceeEEEEec-CChHHHHHHHHHCCceeeec-----------CCCCEEEEeCCCCC
Q 013008          371 -----KLARNPHVKDVRG------LGLIIGIEFD-VSATPVVDACRDSGLLVLTA-----------GKGNVVRLVPPLII  427 (451)
Q Consensus       371 -----~~~~~~~~~~v~g------~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~-----------~~~~~iri~~~~~~  427 (451)
                           .+++++.+..+..      .|.++.+.+. .+..++.+.|.++||.+.++           +..+.+|++++..+
T Consensus       315 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~  394 (420)
T 1t3i_A          315 HYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYN  394 (420)
T ss_dssp             HHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTC
T ss_pred             HHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCC
Confidence                 3344554433322      3778888774 35678889999999999886           21368999999889


Q ss_pred             CHHHHHHHHHHHHHHHHHHhh
Q 013008          428 SEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       428 t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +++++++++++|++++++++.
T Consensus       395 ~~~~i~~~~~~l~~~~~~~~~  415 (420)
T 1t3i_A          395 TKEEIDLFLQSLQATIRFFSD  415 (420)
T ss_dssp             CHHHHHHHHHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999987653

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.95  E-value=7.3e-28  Score=243.08  Aligned_cols=334  Identities=13%  Similarity=0.068  Sum_probs=219.8

Q ss_pred             EEeeccCcccccCCCCCHHHHHHH--HHHHhhcccccCCCCC-HHHHHHHHHHhhccC--CCeEEecCCHHHHH--HHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAV--VDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEAN--EAAI  172 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~--~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~--~~al  172 (451)
                      .|||..|.....+...++.+.+++  .+++.........|.. ....+|.+.++++++  .++|++|+|+++|+  +.++
T Consensus        35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~  114 (427)
T 3ppl_A           35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS  114 (427)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred             eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence            478877665433322233455555  4444332211122222 235677777877776  67999999999999  5788


Q ss_pred             HHHHHHhh-hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcCCCCe
Q 013008          173 KFARKFQR-HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQPGKT  247 (451)
Q Consensus       173 ~~a~~~~~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~  247 (451)
                      +++...+. ...+....++++|++.+|+|+++.......+..             +..+|.    -|+++|+++++..++
T Consensus       115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~g~d~~~l~~~l~~~~~  181 (427)
T 3ppl_A          115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFE-------------MISVPMNEDGPDMDAVEELVKNPQV  181 (427)
T ss_dssp             HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCE-------------EEEEEEETTEECHHHHHHHTTSTTE
T ss_pred             HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCE-------------EEEeCCCCCCCCHHHHHHHHhcCCC
Confidence            86653100 000000001789999999999876544333221             112221    189999999965578


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHH-HHhCCEEEEeccccCCCccccc----ccc------cccCCCcceeeeccc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTGYL----WAH------EHYGIFPDIMTLAKP  316 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tg~gr~G~~----~~~------~~~~~~pdi~t~sK~  316 (451)
                      ++|+++|..+|+++.+++.+.+++|+++| ++||+++|+||+|+++.+.+..    ...      +..+..+++.+|||.
T Consensus       182 ~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  261 (427)
T 3ppl_A          182 KGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI  261 (427)
T ss_dssp             EEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT
T ss_pred             eEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc
Confidence            89999985544434567888899999999 9999999999999985333321    111      133455667799999


Q ss_pred             ccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHHHHH---------------HHhCCC---C
Q 013008          317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLAS---------------KLARNP---H  377 (451)
Q Consensus       317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~---------------~~~~~~---~  377 (451)
                      +++|+|+||+++++++++.+.......+++.+++.+.++.++++... -..++++               +.+.++   .
T Consensus       262 ~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~  341 (427)
T 3ppl_A          262 TLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGV  341 (427)
T ss_dssp             SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred             cCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            76799999999999999888655555678889999988887775310 0111111               222222   1


Q ss_pred             cce-ecccceeEEEEec-CChHHHHHHHHHCCceeeecC---------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          378 VKD-VRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       378 ~~~-v~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +.. ....|+++++.+. .+..++.+.|.++||.+.|++         ..+.+|++++.. ++++|++++++|.++++++
T Consensus       342 ~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~  420 (427)
T 3ppl_A          342 AQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA  420 (427)
T ss_dssp             CEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             eEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence            221 2335788888884 357788899999999998832         136899987654 9999999999999999876


Q ss_pred             h
Q 013008          447 D  447 (451)
Q Consensus       447 ~  447 (451)
                      .
T Consensus       421 ~  421 (427)
T 3ppl_A          421 A  421 (427)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.95  E-value=7.2e-27  Score=233.78  Aligned_cols=316  Identities=14%  Similarity=0.071  Sum_probs=207.2

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCC-CCHHHHHHHHHHhhc--cC---CCeEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMY-YSIPQIELAKRLVAC--SF---ADRVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~-~~~~~~~l~~~l~~~--~~---~e~v~~~~sG~eA~  168 (451)
                      |+++|||.++.+  .++ .+|.+.+++.+++++....  ...+ ......+|.+.++++  .+   .++|++++|+++|+
T Consensus        32 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al  108 (400)
T 3asa_A           32 QHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL  108 (400)
T ss_dssp             TSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred             CCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence            678999988865  343 6899999999998764221  1112 222356788888887  34   67999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCH----HHHHHhcCC
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI----EATRKLIQP  244 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~le~~l~~  244 (451)
                      ..+++++.            ++++|++.+|+|+++...... .+..           .+..+|.++-    .++++.   
T Consensus       109 ~~~~~~~~------------~gd~Vl~~~p~y~~~~~~~~~-~g~~-----------~~~~~~~~~~~~~~~~l~~~---  161 (400)
T 3asa_A          109 FRLLSFFG------------PNQTVAIQDPSYPAYLDIARL-TGAK-----------EIIALPCLQENAFFPEFPED---  161 (400)
T ss_dssp             HHHHHHHC------------SSCEEEEEESCCHHHHHHHHH-TTCS-----------EEEEEECCGGGTTCCCCCTT---
T ss_pred             HHHHHHcC------------CCCEEEECCCCcHHHHHHHHH-cCCc-----------ceEecccchhcCcccChhhc---
Confidence            98765432            588999999999997644322 2211           0122222110    011111   


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cccccccC----CCcceeeeccccc-
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYG----IFPDIMTLAKPLA-  318 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~----~~pdi~t~sK~lg-  318 (451)
                      .++++|++++.++++|. +++.+++++|+++|++||+++|+||+|++|++.|. ......++    ....+.++||.+| 
T Consensus       162 ~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~  240 (400)
T 3asa_A          162 THIDILCLCSPNNPTGT-VLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF  240 (400)
T ss_dssp             CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTT
T ss_pred             cCccEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCC
Confidence            35667777666666665 57899999999999999999999999998866553 12222222    2234668999998 


Q ss_pred             CCcccccccccHHH-------HhhccCCCccCCC-CCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcce
Q 013008          319 GGLPIGAALVTEKV-------ASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKD  380 (451)
Q Consensus       319 ~G~~iG~v~~~~~i-------~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~  380 (451)
                      +|+|+||+++++++       ++.+.......++ +.|+++++++.++|+...-++..++          .+++. .+..
T Consensus       241 ~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  319 (400)
T 3asa_A          241 AGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFEV  319 (400)
T ss_dssp             TTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             cchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence            79999999999887       4444222223344 5789999999999886422222222          22223 2333


Q ss_pred             ecc-cceeEEEE-ec--CChHHHHHHHHH-CCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          381 VRG-LGLIIGIE-FD--VSATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       381 v~g-~G~~~~~~-~~--~~~~~~~~~l~~-~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..+ .|.++++. +.  .+..++.+.|++ +||++.|+..     .+.+|++  +..+++++++++++|++++++.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~  393 (400)
T 3asa_A          320 FGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPALQ  393 (400)
T ss_dssp             EECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC-----
T ss_pred             eCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHHhh
Confidence            333 47788888 63  245568888875 4999987631     3679997  5679999999999999988754

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.95  E-value=1e-27  Score=239.08  Aligned_cols=314  Identities=13%  Similarity=0.066  Sum_probs=207.1

Q ss_pred             CCEEEeeccCcccccCC--CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-----CCCeEEe--cCCHHHH
Q 013008           97 GREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-----FADRVFF--SNTGTEA  167 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~e~v~~--~~sG~eA  167 (451)
                      |.++|||.+|.+..+.|  +.+|.|.+++.+++++... ..+.......++.+.+++++     ..++|++  ++||++|
T Consensus        25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a  103 (394)
T 2ay1_A           25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT-KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA  103 (394)
T ss_dssp             CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC-CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred             CccccccccceeeCCCCCccCcHHHHHHHHHhcCCccc-CCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence            56689999998755555  5789999999998765211 11111122345555555543     3578999  9999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-------CCHHHHHH
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------GNIEATRK  240 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~  240 (451)
                      ++.++++++.+.         ++++|++.+|+||++.......+..             +..++.       .|+++|++
T Consensus       104 ~~~~~~~~~~~~---------~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~  161 (394)
T 2ay1_A          104 LRQALELARMAN---------PDLRVFVSDPTWPNHVSIMNFMGLP-------------VQTYRYFDAETRGVDFEGMKA  161 (394)
T ss_dssp             HHHHHHHHHHHC---------TTCCEEEEESCCHHHHHHHHHHTCC-------------EEEEECEETTTTEECHHHHHH
T ss_pred             HHHHHHHHHhcC---------CCCEEEEcCCCChhHHHHHHHcCCc-------------eEEEecccccCCccCHHHHHH
Confidence            999999877543         4789999999999987654433321             111222       17999999


Q ss_pred             hcCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc--cccccccc-CCCcc---eee
Q 013008          241 LIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAHEHY-GIFPD---IMT  312 (451)
Q Consensus       241 ~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~~~~-~~~pd---i~t  312 (451)
                      .+++.  ..++++++..++++|. .++.+++++|+++|++||+++|+||+|++|++.|  .......+ ...++   +.+
T Consensus       162 ~l~~~~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  240 (394)
T 2ay1_A          162 DLAAAKKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS  240 (394)
T ss_dssp             HHHTCCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             HHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEe
Confidence            98642  3566666666666665 6789999999999999999999999999987654  22122211 11233   447


Q ss_pred             eccccc-CCcccccccc---cHHHHhhccCC---CccCCCC-CcHHHHHHHHHHHHHhc-C---hHHHHH----------
Q 013008          313 LAKPLA-GGLPIGAALV---TEKVASAINYG---DHGSTFA-GSPLVCNAAIAVLDKIS-N---PAFLAS----------  370 (451)
Q Consensus       313 ~sK~lg-~G~~iG~v~~---~~~i~~~~~~~---~~~~t~~-~~~~~~aaa~aal~~~~-~---~~~~~~----------  370 (451)
                      +||.++ +|+|+||+++   ++++++.+...   .+..+++ .|+++++++.++|+... .   +++.++          
T Consensus       241 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~  320 (394)
T 2ay1_A          241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE  320 (394)
T ss_dssp             CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999 7999999987   66654433211   1123443 48899999888886430 0   011111          


Q ss_pred             -H---HhCCC---Ccceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          371 -K---LARNP---HVKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       371 -~---~~~~~---~~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                       +   ++.++   .+....+ .|+++++.+  ....+.+.|.++||++.++     +|++++ .++++++++++++|+++
T Consensus       321 ~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~gi~v~~~-----~Ris~~-~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGA--TPEQVKRIKEEFGIYMVGD-----SRINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHHTSSTTTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCeeEEcCCceEEEeeCC--CHHHHHHHHHhCCEEecCC-----CeEEee-cCCHhhHHHHHHHHHHc
Confidence             1   11111   1222233 367766654  3455666677899999864     599877 47999999999999875

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.95  E-value=1.6e-26  Score=232.23  Aligned_cols=282  Identities=14%  Similarity=0.078  Sum_probs=188.8

Q ss_pred             HHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc-----eEEEE-cCCccCChhhhhhcc
Q 013008          142 QIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT-----EFVSF-TNSFHGRTMGALALT  211 (451)
Q Consensus       142 ~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~-----~ii~~-~~~yhg~~~~~~~~~  211 (451)
                      +.++++++.+.++    .++|++|+||++|+..+++++..           +++     +||+. +|+||++........
T Consensus        81 r~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-----------~gd~~~~~~vi~~~~p~~~~~~~~~~~~~  149 (417)
T 3g7q_A           81 LNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG-----------RRADGSTKKVLFPLAPEYIGYADSGLEDD  149 (417)
T ss_dssp             HHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB-----------C----CCBEEEESSCCCHHHHHC-----C
T ss_pred             HHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC-----------CCccCCcceEEEeCCCccccchhhccchh
Confidence            4444444443322    68999999999999999997752           333     78886 999998865432211


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCC------CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEE
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYG------NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF  285 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~  285 (451)
                      .       +....+.+..++.+      |+++|+  +.+ ++++|+++..++++|. +++.+.+++|+++|++||+++|+
T Consensus       150 ~-------~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~  218 (417)
T 3g7q_A          150 L-------FVSARPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVI  218 (417)
T ss_dssp             C-------EEECCCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             h-------hccccCcccccCCcccccccCHHHhc--ccc-CceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEE
Confidence            0       01111222222221      677776  443 5677776665666665 56888899999999999999999


Q ss_pred             eccccCCCcccccc---cccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008          286 DEVQCGLGRTGYLW---AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       286 DEv~tg~gr~G~~~---~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      ||+|..+ ..+..+   .....+....+.++||...+|+|+||+++++++++.+....+..+++.++++++++.++++..
T Consensus       219 De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  297 (417)
T 3g7q_A          219 DNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRN  297 (417)
T ss_dssp             ECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTT
T ss_pred             eCCCccc-cccccccccccCCCCCEEEEEechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCc
Confidence            9999643 222111   011123344467899964568999999999999998876556677888999999998888642


Q ss_pred             cChH-----H----HHH-------HHhCCCC--cce-ecccceeEEEEec---CChHHHHHHHHHCCceeeecCC-----
Q 013008          363 SNPA-----F----LAS-------KLARNPH--VKD-VRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAGK-----  415 (451)
Q Consensus       363 ~~~~-----~----~~~-------~~~~~~~--~~~-v~g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~~-----  415 (451)
                      .-..     .    .++       +.+.++.  +.. .+..|+++|+.+.   .+..++.+.|.++||.+.|+..     
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~  377 (417)
T 3g7q_A          298 DLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGL  377 (417)
T ss_dssp             CHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTB
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCC
Confidence            2111     1    111       2233442  222 2445888888884   3678899999999999987531     


Q ss_pred             -------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          416 -------GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       416 -------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                             .+.+||+++.  ++++|++++++|.++++++..
T Consensus       378 ~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~  415 (417)
T 3g7q_A          378 DKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWR  415 (417)
T ss_dssp             SSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence                   2589998774  999999999999999988754

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.95  E-value=5e-26  Score=225.79  Aligned_cols=309  Identities=12%  Similarity=0.074  Sum_probs=216.9

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al~~  174 (451)
                      +.|+|..+      .++.+|++.+|+.+++..  + +.....+...+++++++++++.   +.+++++||++|+..++++
T Consensus        20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~-~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~   90 (386)
T 2dr1_A           20 KYKLFTAG------PVACFPEVLEIMKVQMFS--H-RSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN   90 (386)
T ss_dssp             CSEECCSS------SCCCCHHHHHHTTSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred             cceeecCC------CcCCcHHHHHHHhccccc--c-cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence            45777643      345789999988776532  1 1111134478899999998873   4699999999999999997


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccC--ChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcC-CCC
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHG--RTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQ-PGK  246 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~-~~~  246 (451)
                      +.           .++++|++.+++||+  +...+ ...+..            +..++.     .|+++|+++++ ..+
T Consensus        91 l~-----------~~gd~vl~~~~~~~~~~~~~~~-~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~~~  146 (386)
T 2dr1_A           91 GV-----------SKGGKVLVTIIGAFGKRYKEVV-ESNGRK------------AVVLEYEPGKAVKPEDLDDALRKNPD  146 (386)
T ss_dssp             HS-----------CTTCEEEEEESSHHHHHHHHHH-HHTTCE------------EEEEECCTTCCCCHHHHHHHHHHCTT
T ss_pred             hh-----------cCCCeEEEEcCCchhHHHHHHH-HHhCCc------------eEEEecCCCCCCCHHHHHHHHhcCCC
Confidence            64           158899999999998  33222 222211            122221     48999999995 246


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccCCcccc
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIG  324 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG  324 (451)
                      +++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.+ ...  .....  ..+|++++  +|+++++.++|
T Consensus       147 ~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~--~~~~~--~~~di~~~s~sK~~~~~~g~G  217 (386)
T 2dr1_A          147 VEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GAD--IKFDK--WGLDVVFSSSQKAFGVPPGLA  217 (386)
T ss_dssp             CCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TBC--CCTTT--TTCSEEEEETTSTTCCCSSCE
T ss_pred             CcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Ccc--ccccc--cCCcEEEEeccccccCCCceE
Confidence            788888888888888766    999999999999999999999733 221  12222  24677755  49998755689


Q ss_pred             cccccHHHHhhccCC------------------CccCCCCCcHHHHHHHHHHHHHhcCh----HHHHH----------HH
Q 013008          325 AALVTEKVASAINYG------------------DHGSTFAGSPLVCNAAIAVLDKISNP----AFLAS----------KL  372 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~------------------~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~----------~~  372 (451)
                      ++++++++++.+.+.                  ....+++.++++++++.++|+.+.+.    +..++          .+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L  297 (386)
T 2dr1_A          218 IGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGV  297 (386)
T ss_dssp             EEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            999999988876421                  12345667889999999999875432    22222          22


Q ss_pred             hCCCCcceecc----cceeEEEEec--CChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          373 ARNPHVKDVRG----LGLIIGIEFD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       373 ~~~~~~~~v~g----~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.+. +....+    .+.++++.+.  .+..++.+.|.++||.+.++.   ..+.+|++++..++++++++++++|++++
T Consensus       298 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  376 (386)
T 2dr1_A          298 REIG-LDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVI  376 (386)
T ss_dssp             HHTT-CCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred             HHcC-CeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            2222 222222    4678888774  357789999999999998863   13689999998899999999999999999


Q ss_pred             HHHhhc
Q 013008          444 PVLDSN  449 (451)
Q Consensus       444 ~~~~~~  449 (451)
                      ++++..
T Consensus       377 ~~~~~~  382 (386)
T 2dr1_A          377 NELKKQ  382 (386)
T ss_dssp             HHHHHH
T ss_pred             HHcCCC
Confidence            887543

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.94  E-value=5.6e-26  Score=228.60  Aligned_cols=316  Identities=16%  Similarity=0.148  Sum_probs=216.7

Q ss_pred             cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHh--hcccccCC-------CCCHHHHHHHHHHhhccC--CCeEEecCC
Q 013008           95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQAN--VLTHVSNM-------YYSIPQIELAKRLVACSF--ADRVFFSNT  163 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~~~~-------~~~~~~~~l~~~l~~~~~--~e~v~~~~s  163 (451)
                      .++.-|+|+.++      |+.+|++.+++.+++.  +....+..       ...+...+++++++++++  .++|++++|
T Consensus        20 ~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g   93 (423)
T 3lvm_A           20 MKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG   93 (423)
T ss_dssp             CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESS
T ss_pred             cCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCC
Confidence            356678887654      4689999999999887  32111111       112235789999999987  459999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc--cCCCCcCCCCcCCCCCeeEeeCC-----CHH
Q 013008          164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYG-----NIE  236 (451)
Q Consensus       164 G~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~  236 (451)
                      |++|++.+++++..+..       .+++.|++.+++|++.......+  .+.            .+..++.+     |++
T Consensus        94 gt~a~~~a~~~l~~~~~-------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~  154 (423)
T 3lvm_A           94 ATESDNLAIKGAANFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGF------------EVTYLAPQRNGIIDLK  154 (423)
T ss_dssp             HHHHHHHHHHHHHHHHT-------TTCCEEEEETTSCHHHHHHHHHHHHTTC------------EEEEECCCTTSCCCHH
T ss_pred             hHHHHHHHHHHHHHhhc-------cCCCEEEECCccchHHHHHHHHHHHcCC------------EEEEeccCCCCccCHH
Confidence            99999999997764332       14889999999999875444322  111            12222222     899


Q ss_pred             HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--
Q 013008          237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--  314 (451)
Q Consensus       237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--  314 (451)
                      +|++++++ ++++|+++++++++|.+.+    +++|+++|++||++||+||+|+. +..    ........+|++++|  
T Consensus       155 ~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~~~~~~~di~~~s~s  224 (423)
T 3lvm_A          155 ELEAAMRD-DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PIDLSQLKVDLMSFSGH  224 (423)
T ss_dssp             HHHHHCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCCTTTSCCSEEEEEST
T ss_pred             HHHHhcCC-CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcChhhcCCCEEEechH
Confidence            99999975 6889999999888888776    99999999999999999999863 222    122223457877655  


Q ss_pred             ccccCCcccccccccHHHHhhccCCCc-------cCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCC
Q 013008          315 KPLAGGLPIGAALVTEKVASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARN  375 (451)
Q Consensus       315 K~lg~G~~iG~v~~~~~i~~~~~~~~~-------~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~  375 (451)
                      |.++ +.++|++++++++++.+.+...       ..+.+.++..++++.++++.+..  +++.++          .++++
T Consensus       225 K~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  303 (423)
T 3lvm_A          225 KIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI  303 (423)
T ss_dssp             TTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HhcC-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9654 3458999999887777654322       22344577778777788776543  222222          23455


Q ss_pred             CCcceeccc----ceeEEEEec-CChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCC
Q 013008          376 PHVKDVRGL----GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIIS  428 (451)
Q Consensus       376 ~~~~~v~g~----G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t  428 (451)
                      |.+..+...    +.++.+.+. .+..++.+.|.+  +.+.++..                      .+.+|++++..++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t  381 (423)
T 3lvm_A          304 EEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT  381 (423)
T ss_dssp             TTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCC
T ss_pred             CCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCC
Confidence            544333222    345666663 456777777766  66665421                      2679999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 013008          429 EQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       429 ~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +|++++++++|++++++++.
T Consensus       382 ~e~i~~~~~~l~~~~~~~~~  401 (423)
T 3lvm_A          382 EEEIDYTIELVRKSIGRLRD  401 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999988764

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.94  E-value=7.2e-27  Score=230.76  Aligned_cols=309  Identities=13%  Similarity=0.114  Sum_probs=214.7

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-------cccCCCCCHHHHHHHHH-HhhccCCCeEEecCCHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-------HVSNMYYSIPQIELAKR-LVACSFADRVFFSNTGTEANE  169 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~-l~~~~~~e~v~~~~sG~eA~~  169 (451)
                      -.|+|+..     +.++.+|++.+++.+++....       +....+......+++++ ++++++.+.+++++||++|++
T Consensus         9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~   83 (371)
T 2e7j_A            9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKF   83 (371)
T ss_dssp             CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHH
T ss_pred             cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHH
Confidence            45666633     245689999999999886542       11112233447889999 999998669999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee--CC-----CHHHHHHhc
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE--YG-----NIEATRKLI  242 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----d~~~le~~l  242 (451)
                      .+++++.           .++++|++.+++||+..... ...+.            .+..++  .+     |+++|++++
T Consensus        84 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~-~~~g~------------~~~~v~~~~~~~~~~d~~~l~~~l  139 (371)
T 2e7j_A           84 AVMHSLA-----------KKDAWVVMDENCHYSSYVAA-ERAGL------------NIALVPKTDYPDYAITPENFAQTI  139 (371)
T ss_dssp             HHHHHHC-----------CTTCEEEEETTCCHHHHHHH-HHTTC------------EEEEECCCCTTTCCCCHHHHHHHH
T ss_pred             HHHHHHh-----------CCCCEEEEccCcchHHHHHH-HHcCC------------eEEEeecccCCCCCcCHHHHHHHH
Confidence            9999774           15889999999999887553 22221            122233  22     899999998


Q ss_pred             CC----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eeccc
Q 013008          243 QP----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKP  316 (451)
Q Consensus       243 ~~----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~  316 (451)
                      +.    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.+ ..+  .....++  +|++  +++|+
T Consensus       140 ~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~--~~~~~~~--~di~~~s~sK~  210 (371)
T 2e7j_A          140 EETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP--VSLKEIG--ADFIVGSGHKS  210 (371)
T ss_dssp             HHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC--CCHHHHT--CSEEEEEHHHH
T ss_pred             HhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC--CChhhcC--CCEEEecCCcC
Confidence            62    46888999999888888776    799999999999999999999753 322  1223334  5555  67999


Q ss_pred             ccCCcccccccccHHHHhh-ccCCCc--cC-----CCCCcHHHHHHHHHHHHHhcC---hHH--HHH------HHhCCCC
Q 013008          317 LAGGLPIGAALVTEKVASA-INYGDH--GS-----TFAGSPLVCNAAIAVLDKISN---PAF--LAS------KLARNPH  377 (451)
Q Consensus       317 lg~G~~iG~v~~~~~i~~~-~~~~~~--~~-----t~~~~~~~~aaa~aal~~~~~---~~~--~~~------~~~~~~~  377 (451)
                      +++|.++|++++++++++. +.....  ..     +++.++..++++.++++.+..   ...  .+.      .++.+ .
T Consensus       211 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~  289 (371)
T 2e7j_A          211 MAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKL-G  289 (371)
T ss_dssp             SSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHT-T
T ss_pred             CCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence            9987899999999998887 755433  22     455677878777777776532   112  111      22222 2


Q ss_pred             cceecc---cceeEEEEecCChHHHHHHHHHCCceeeec-------C-CCCEEE-EeCCCC-CCHHHHHHHHHHHHHHHH
Q 013008          378 VKDVRG---LGLIIGIEFDVSATPVVDACRDSGLLVLTA-------G-KGNVVR-LVPPLI-ISEQELDQAVEILCKTLP  444 (451)
Q Consensus       378 ~~~v~g---~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~-~~~~ir-i~~~~~-~t~e~i~~~l~~l~~~l~  444 (451)
                      +..+..   .|.++++.+. +..++.+.|.++||.+.|.       + ..+.+| ++++.. ++++++++++++|+++++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~  368 (371)
T 2e7j_A          290 IKQLGDNPHNHDLMFFHAE-VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE  368 (371)
T ss_dssp             CEEESSSSCCSSEEEEECH-HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             cEEecCCCccCceEEEECC-CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence            222222   4778888875 5667888888899998761       1 136789 988877 899999999999999987


Q ss_pred             HH
Q 013008          445 VL  446 (451)
Q Consensus       445 ~~  446 (451)
                      ++
T Consensus       369 ~~  370 (371)
T 2e7j_A          369 KY  370 (371)
T ss_dssp             HC
T ss_pred             hc
Confidence            54

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.94  E-value=2.3e-25  Score=220.75  Aligned_cols=318  Identities=14%  Similarity=0.128  Sum_probs=213.2

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccCCC-----CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNMY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEA  170 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~-----~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~  170 (451)
                      .|+|+.++      |+.+|+|.+++.+++++.. ......     ......+++++++++++  .+++++++||++|+..
T Consensus         3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~   76 (384)
T 1eg5_A            3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW   76 (384)
T ss_dssp             EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred             EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence            57776653      4789999999999987521 111101     12336789999999987  4699999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh--hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      +++++..+..       .++++|++.+++||+......  ...+.....   .+..++.    ..|+++|++++++ +++
T Consensus        77 ~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~i~~-~~~  141 (384)
T 1eg5_A           77 ILKTVAETFE-------KRKRTIITTPIEHKAVLETMKYLSMKGFKVKY---VPVDSRG----VVKLEELEKLVDE-DTF  141 (384)
T ss_dssp             HHHHHHHHTT-------TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEE---CCBCTTS----CBCHHHHHHHCCT-TEE
T ss_pred             HHHhhhhhcc-------CCCCEEEECCCCchHHHHHHHHHHhcCCEEEE---EccCCCC----ccCHHHHHHHhCC-CCe
Confidence            9998763210       157899999999998754432  222221111   1111111    1289999999975 688


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhC--CEEEEeccccCCCcccccccccccCCCcceeeec--ccccC-Cccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAG-GLPI  323 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~-G~~i  323 (451)
                      +|+++++++++|.+.+    +++|.++|++||  ++||+||+|+ +|...  ....  ...+|++++|  |.++. |  +
T Consensus       142 ~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s~sK~~g~~G--~  210 (384)
T 1eg5_A          142 LVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLE--KLEVDYASFSAHKFHGPKG--V  210 (384)
T ss_dssp             EEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCT--TTCCSEEEEEGGGGTSCTT--C
T ss_pred             EEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCch--hcCCCEEEecHHHhcCCCc--e
Confidence            8888888888887776    899999999999  9999999996 64321  1222  2347877655  98763 4  7


Q ss_pred             ccccccHHH--HhhccCCC---ccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCCCCcceecc---
Q 013008          324 GAALVTEKV--ASAINYGD---HGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARNPHVKDVRG---  383 (451)
Q Consensus       324 G~v~~~~~i--~~~~~~~~---~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~~~~~~v~g---  383 (451)
                      |++++++++  ...+....   ...+++.++++++++.++|+.+.+  ++..++          .+++ +.+..+..   
T Consensus       211 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~  289 (384)
T 1eg5_A          211 GITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEI  289 (384)
T ss_dssp             EEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTS
T ss_pred             EEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCccc
Confidence            999998876  33332211   124567789999988888886422  122221          2222 22222211   


Q ss_pred             -cceeEEEEec-CChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          384 -LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       384 -~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                       .+.++++.+. .+..++.+.|.++||.+.++..                      .+.+|++++..+++|++++++++|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  369 (384)
T 1eg5_A          290 SLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKI  369 (384)
T ss_dssp             BCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHH
Confidence             2456666663 4577899999999999987421                      157999988889999999999999


Q ss_pred             HHHHHHHhhc
Q 013008          440 CKTLPVLDSN  449 (451)
Q Consensus       440 ~~~l~~~~~~  449 (451)
                      ++++++++..
T Consensus       370 ~~~~~~~~~~  379 (384)
T 1eg5_A          370 EEILSFLDLT  379 (384)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHHhh
Confidence            9999887654

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.94  E-value=5.3e-26  Score=230.47  Aligned_cols=284  Identities=13%  Similarity=0.097  Sum_probs=192.8

Q ss_pred             HHHHHHHHhhcc----CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc--------------eEEEE-cCCccC
Q 013008          142 QIELAKRLVACS----FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT--------------EFVSF-TNSFHG  202 (451)
Q Consensus       142 ~~~l~~~l~~~~----~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~--------------~ii~~-~~~yhg  202 (451)
                      +.++++++.+.+    ..++|++|+||++|+..+++++..           +++              +||+. +|+|++
T Consensus        89 r~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-----------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~  157 (444)
T 3if2_A           89 IDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG-----------AFVNEHSQDKESKSVDKSILLPLTPEYIG  157 (444)
T ss_dssp             HHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE-----------EEECC-------CEEEEEEEESSSSCCGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC-----------CCccccccccccccccceEEEeCCCCccc
Confidence            445555554433    368999999999999999997641           344              57665 899998


Q ss_pred             ChhhhhhccCCCCcCCCCcCCCCCeeEeeC----------CCHHHHHHh---cCCCCeEEEEEccccCCCCccccCHHHH
Q 013008          203 RTMGALALTSKEHYRSPFEPVMPGVNFVEY----------GNIEATRKL---IQPGKTAAVFVEPIQGEGGIYSATKEFL  269 (451)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~~le~~---l~~~~~aavi~ep~~~~~G~~~~~~~~l  269 (451)
                      +........       .+......+..++.          -|+++|+++   +.+ ++++|+++..++++|. +++.+.+
T Consensus       158 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~-~~~~~~l  228 (444)
T 3if2_A          158 YSDVHVEGQ-------HFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGN-VLTDEEM  228 (444)
T ss_dssp             GTTCCSSSC-------CEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCC-CCCHHHH
T ss_pred             hhhcccccc-------hhhccCceEEecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCC-cCCHHHH
Confidence            764321100       00111122222331          289999988   443 5666666555556665 5688899


Q ss_pred             HHHHHHHHHhCCEEEEeccccCCCcccccc---cccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCC
Q 013008          270 QFLRDACDDAGALLVFDEVQCGLGRTGYLW---AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFA  346 (451)
Q Consensus       270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~---~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~  346 (451)
                      ++|+++|++||++||+||+|..+ ..+..+   .....+..+++.++||.+.+|+|+||+++++++++.+....+..+++
T Consensus       229 ~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~  307 (444)
T 3if2_A          229 AHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLA  307 (444)
T ss_dssp             HHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCC
Confidence            99999999999999999999643 122111   11123445667799998556899999999999999887655556778


Q ss_pred             CcHHHHHHHHHHHHHhcCh---------HHHHH-------HHhCCCC--cce-ecccceeEEEEec---CChHHHHHHHH
Q 013008          347 GSPLVCNAAIAVLDKISNP---------AFLAS-------KLARNPH--VKD-VRGLGLIIGIEFD---VSATPVVDACR  404 (451)
Q Consensus       347 ~~~~~~aaa~aal~~~~~~---------~~~~~-------~~~~~~~--~~~-v~g~G~~~~~~~~---~~~~~~~~~l~  404 (451)
                      .++++++++.++++...-.         .+.++       +.+.++.  +.. .+..|+++++.+.   .+..++.+.|.
T Consensus       308 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~  387 (444)
T 3if2_A          308 PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLK  387 (444)
T ss_dssp             CCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHH
Confidence            8899999988888742111         01111       2233442  222 2355888888884   35788999999


Q ss_pred             HCCceeeecCC---C----------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          405 DSGLLVLTAGK---G----------NVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       405 ~~Gv~~~~~~~---~----------~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ++||.+.|+..   +          +.+||+++.  ++++|++++++|.++++++.+
T Consensus       388 ~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~  442 (444)
T 3if2_A          388 AKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYD  442 (444)
T ss_dssp             HTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHc
Confidence            99999987631   1          479998876  999999999999999988764

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.94  E-value=1e-24  Score=218.92  Aligned_cols=320  Identities=18%  Similarity=0.106  Sum_probs=219.8

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhc-ccccC--C---CCCHHHHHHHHHHhhccC--CCeEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN--M---YYSIPQIELAKRLVACSF--ADRVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~--~---~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA  167 (451)
                      +|..|+|+.+      .|+.+|.|.+++.+++++. .....  .   .......+++++++++++  .++|++++||++|
T Consensus        27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a  100 (416)
T 1qz9_A           27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN  100 (416)
T ss_dssp             TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred             CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence            5788999754      3578899999999998753 11110  0   112446789999999988  4689999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK  246 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  246 (451)
                      ++.+++.++.+....     .+++++|+.++.+|+....... +....       .....+..++.  +++|++++.+ +
T Consensus       101 l~~al~~~~~~~~~~-----~~gd~vii~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~v~~--~~~l~~~i~~-~  165 (416)
T 1qz9_A          101 LFKVLSAALRVQATR-----SPERRVIVTETSNFPTDLYIAEGLADML-------QQGYTLRLVDS--PEELPQAIDQ-D  165 (416)
T ss_dssp             HHHHHHHHHHHHHHH-----STTCCEEEEETTSCHHHHHHHHHHHHHH-------CSSCEEEEESS--GGGHHHHCST-T
T ss_pred             HHHHHHhhccccccc-----CCCCcEEEEcCCCCCchHHHHHHHHHHh-------cCCceEEEeCc--HHHHHHHhCC-C
Confidence            999999775331000     0467788888888886544322 11000       00112344554  7888888864 6


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccCCccc-
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPI-  323 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~G~~i-  323 (451)
                      +++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...  .....+  .+|++++  +|.+++|.++ 
T Consensus       166 ~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g~~~~  236 (416)
T 1qz9_A          166 TAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGGPGSQ  236 (416)
T ss_dssp             EEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCCTTCC
T ss_pred             ceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCCCCCe
Confidence            889999999888888776    8999999999999999999996 54332  122223  3677765  5999878888 


Q ss_pred             ccccccHHHHhhccCCCcc----------------------C-CCCCcHHHHHHHHHHHHHhcCh---HHHHH-------
Q 013008          324 GAALVTEKVASAINYGDHG----------------------S-TFAGSPLVCNAAIAVLDKISNP---AFLAS-------  370 (451)
Q Consensus       324 G~v~~~~~i~~~~~~~~~~----------------------~-t~~~~~~~~aaa~aal~~~~~~---~~~~~-------  370 (451)
                      |++++++++++.+.+...+                      . ..+.++.+++++.++++.+..+   ++.++       
T Consensus       237 g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  316 (416)
T 1qz9_A          237 AFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDL  316 (416)
T ss_dssp             CEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9999999987776542111                      1 2245788888888889877532   22222       


Q ss_pred             ---HHhCC-C--Ccceecc-----cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCC-CCCCHHHHHHHHHH
Q 013008          371 ---KLARN-P--HVKDVRG-----LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPP-LIISEQELDQAVEI  438 (451)
Q Consensus       371 ---~~~~~-~--~~~~v~g-----~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~-~~~t~e~i~~~l~~  438 (451)
                         .++.. |  .+..+..     .+.++++.+. ...++.+.|.++||.+...+. +.+|++++ +.++++++++++++
T Consensus       317 l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~gi~~~~~~~-~~lRis~~~~~~t~~~i~~~~~~  394 (416)
T 1qz9_A          317 FIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-EGYAVIQALIDRGVIGDYREP-RIMRFGFTPLYTTFTEVWDAVQI  394 (416)
T ss_dssp             HHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-THHHHHHHHHTTTEECEEETT-TEEEEECCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC-CHHHHHHHHHhCCcEeccCCC-CeEEEeCcccCCCHHHHHHHHHH
Confidence               12221 2  2222222     3567777774 367899999999999876544 78999987 68899999999999


Q ss_pred             HHHHHHHHh
Q 013008          439 LCKTLPVLD  447 (451)
Q Consensus       439 l~~~l~~~~  447 (451)
                      |++++++..
T Consensus       395 l~~~~~~~~  403 (416)
T 1qz9_A          395 LGEILDRKT  403 (416)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHhccc
Confidence            999987643

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.94  E-value=1.3e-25  Score=223.01  Aligned_cols=320  Identities=16%  Similarity=0.102  Sum_probs=210.6

Q ss_pred             EEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHH
Q 013008           91 KLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANE  169 (451)
Q Consensus        91 ~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~  169 (451)
                      .++|.+++.+.++...++...++|..++..+.                   ..++++++++.++ .+.++|++||++|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-------------------~~~~~~~l~~~~~~~~~v~~~~sgt~a~~   65 (379)
T 3ke3_A            5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEV-------------------MNDLLSNLKTVYNAEAAVIIPGSGTYGME   65 (379)
T ss_dssp             ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHH-------------------HHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred             hhccCCHHHHHHHHHhccCCCCCCCCHHHHHH-------------------HHHHHHHHHHHhCCCCEEEEcCChhHHHH
Confidence            46788999999888776666677877765533                   2344556666666 357889999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc-cCCCCcCCCCcCCCC----Ce-eEeeCCCHHHHHHhcC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMP----GV-NFVEYGNIEATRKLIQ  243 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~----~~-~~~~~~d~~~le~~l~  243 (451)
                      .+++.+.            ++++||+++++||+.....+.. .+... ...+.+...    +. ......|+++++++++
T Consensus        66 ~~~~~~~------------~gd~vi~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~  132 (379)
T 3ke3_A           66 AVARQLT------------IDEDCLIIRNGWFSYRWTQILEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIK  132 (379)
T ss_dssp             HHHHHHC------------TTCEEEEEECSHHHHHHHHHHHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHH
T ss_pred             HHHHhCC------------CCCeEEEEeCCchhHHHHHHHHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHh
Confidence            9886432            5899999999999875433321 11100 000000000    00 0012358999999996


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCccc
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI  323 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~i  323 (451)
                      ..++++|++..+.++.|. +.+.+++++|+++|++||+++|+||+++  |  +..+..+.+++.+.+.+++|+++++.++
T Consensus       133 ~~~~~~v~~~~~~~~~G~-~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~~g~  207 (379)
T 3ke3_A          133 EDKSAIVYAPHVETSSGI-ILSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSSTPCA  207 (379)
T ss_dssp             HHTCSEEEEESEETTTTE-ECCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSCCCE
T ss_pred             hcCCcEEEEEeecCCCce-eCCHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCCCce
Confidence            335667777777777775 5678899999999999999999999986  3  3344555667655566677999876778


Q ss_pred             ccccccHHHHhhccCCC----------------------ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH--------
Q 013008          324 GAALVTEKVASAINYGD----------------------HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS--------  370 (451)
Q Consensus       324 G~v~~~~~i~~~~~~~~----------------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~--------  370 (451)
                      |++++++++++.+.+..                      +..+++.|+..++++.++|+.+.++   +..++        
T Consensus       208 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l  287 (379)
T 3ke3_A          208 GLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRV  287 (379)
T ss_dssp             EEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             EEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence            99999999888765311                      0122366788888888999877543   22222        


Q ss_pred             --HHhCCC--Ccceec-ccceeEEEEecCChHHHHHHHHHCCceeeecCC--------CCEEEEeCCCCCCHHHHHHHHH
Q 013008          371 --KLARNP--HVKDVR-GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK--------GNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       371 --~~~~~~--~~~~v~-g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--------~~~iri~~~~~~t~e~i~~~l~  437 (451)
                        .++.+.  ...... ..+.+..+.++.....+.+.|.++||.+.++..        ++.+|++++..+|++||+++++
T Consensus       288 ~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~  367 (379)
T 3ke3_A          288 RKVLTDKGIESVAAEGFEAPGVVVSYTERDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVE  367 (379)
T ss_dssp             HHHHHHTTCCBSBCTTCBCSSEEEEECSCHHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHH
T ss_pred             HHHHHHcCCEecCCccccCceEEEEccCCcchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHH
Confidence              122222  111100 112233333332222236778899999887631        4789999999999999999999


Q ss_pred             HHHHHHHHHh
Q 013008          438 ILCKTLPVLD  447 (451)
Q Consensus       438 ~l~~~l~~~~  447 (451)
                      +|+++++++.
T Consensus       368 ~l~~~l~~~~  377 (379)
T 3ke3_A          368 RFEKALDEVL  377 (379)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998875

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.94  E-value=6.7e-26  Score=225.81  Aligned_cols=310  Identities=16%  Similarity=0.059  Sum_probs=210.7

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CC-eEEecCCHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAI  172 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e-~v~~~~sG~eA~~~al  172 (451)
                      +++.|+|..+      -++.+|++.+|+.+++..  + +.....+...++++++++.++  .+ ++++++||++|+..++
T Consensus        32 ~~~~~l~~~~------~~~~~~~v~~a~~~~~~~--~-~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~  102 (393)
T 1vjo_A           32 VPSRLLLGPG------PSNAHPSVLQAMNVSPVG--H-LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI  102 (393)
T ss_dssp             CCCCEECSSS------CCCCCHHHHHHHSSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred             CccceeccCC------CCCCCHHHHHHHhccccc--c-cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence            3456777543      246789999998876543  1 111112347788999999887  45 8999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccC--ChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHG--RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++.           .++++|++.+|+||+  +..... ..+.....   .+...+.    ..|+++|++.+++.++++|
T Consensus       103 ~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~-~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~v  163 (393)
T 1vjo_A          103 ANAV-----------EPGDVVLIGVAGYFGNRLVDMAG-RYGADVRT---ISKPWGE----VFSLEELRTALETHRPAIL  163 (393)
T ss_dssp             HHHC-----------CTTCEEEEEESSHHHHHHHHHHH-HTTCEEEE---EECCTTC----CCCHHHHHHHHHHHCCSEE
T ss_pred             Hhcc-----------CCCCEEEEEcCChhHHHHHHHHH-HcCCceEE---EecCCCC----CCCHHHHHHHHhhCCceEE
Confidence            9774           158899999999998  432221 11211100   1111110    1489999999864256788


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALV  328 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~  328 (451)
                      +++++++++|.+.+    +++|+++|++||+++|+||+|+ +|...    .......+|+++.|  |+++++.++|++++
T Consensus       164 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~----~~~~~~~~di~~~s~sK~l~~~~~~G~l~~  234 (393)
T 1vjo_A          164 ALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP----IFLDAWGVDLAYSCSQKGLGCSPGASPFTM  234 (393)
T ss_dssp             EEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTTTCSEEECCSSSTTCSCSSCEEEEE
T ss_pred             EEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC----CcccccCccEEEEcCcccccCCCceEEEEE
Confidence            88888888887766    8999999999999999999997 65432    11223457887654  99987559999999


Q ss_pred             cHHHHhhccCC-------Cc------------cCCC-CCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCC
Q 013008          329 TEKVASAINYG-------DH------------GSTF-AGSPLVCNAAIAVLDKISNP---AFLAS----------KLARN  375 (451)
Q Consensus       329 ~~~i~~~~~~~-------~~------------~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~  375 (451)
                      ++++++.+...       ..            ..++ +.|+++++++.++|+.+.+.   +..++          .++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  314 (393)
T 1vjo_A          235 SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI  314 (393)
T ss_dssp             CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Confidence            99988876321       10            2234 67889999999999875322   22222          22222


Q ss_pred             CCcceeccc----ceeEEEEec--CChHHHHHHHHHC-CceeeecCC---CCEEEEeC-CCCCCHHHHHHHHHHHHHHH
Q 013008          376 PHVKDVRGL----GLIIGIEFD--VSATPVVDACRDS-GLLVLTAGK---GNVVRLVP-PLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       376 ~~~~~v~g~----G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~~---~~~iri~~-~~~~t~e~i~~~l~~l~~~l  443 (451)
                      . +..+.+.    +.++++.+.  .+..++.+.|.++ ||.+.++..   .+.+|+++ ++..++|++++++++|++++
T Consensus       315 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          315 G-LSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             T-CCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             C-CcccCCccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence            2 2222222    345666663  3577899999988 999988642   37899994 56778889999999999876

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.94  E-value=8.6e-25  Score=213.06  Aligned_cols=299  Identities=14%  Similarity=0.068  Sum_probs=209.5

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~  173 (451)
                      +.+++|||.++..  ++| .+|.+.+++.++++...    .++.....+|.++++++++  .+++++++|+++++..+++
T Consensus        14 ~~~~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~   86 (337)
T 3p1t_A           14 AAAQAVCLAFNEN--PEA-VEPRVQAAIAAAAARIN----RYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA   86 (337)
T ss_dssp             CCCCCEECSSCCC--CSC-CCHHHHHHHHHHGGGTT----SCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCCceEeeCCCC--CCC-CCHHHHHHHHHhhhhhc----cCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence            4567999998854  576 78999999999876532    2345567899999999987  5699999999999999988


Q ss_pred             HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeE
Q 013008          174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTA  248 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a  248 (451)
                      ++             ++++|++.+|+|+++....... +.            .+..++.     .|+++|+++.   +++
T Consensus        87 ~~-------------~gd~vl~~~p~~~~~~~~~~~~-g~------------~~~~v~~~~~~~~d~~~l~~~~---~~~  137 (337)
T 3p1t_A           87 EF-------------SSMRFVTAWPGFDGYRARIAVS-GL------------RHFEIGLTDDLLLDPNDLAQVS---RDD  137 (337)
T ss_dssp             HS-------------TTSEEEEESSSCSHHHHHHTTS-CC------------EEEEECBCTTSSBCHHHHTTCC---TTE
T ss_pred             hc-------------CCCeEEEeCCCcHHHHHHHHHc-CC------------EEEEecCCCCCCCCHHHHHhhc---CCC
Confidence            64             1789999999999876443222 11            1122221     1788888763   345


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCccccccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAAL  327 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~  327 (451)
                      +++++.+++++|.+.+    ++++.++|+++++ +|+||+|.+|+..+... ....+....+.++||.++ +|+++||++
T Consensus       138 ~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK~~g~~G~r~G~~~  211 (337)
T 3p1t_A          138 CVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSKSYGLAGLRLGALF  211 (337)
T ss_dssp             EEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSSTTCCTTTCCEEEE
T ss_pred             EEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCchhccCcchheEEEE
Confidence            6666666667777666    7778888999997 55699998876544321 112222334558999998 799999999


Q ss_pred             ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCCCcceecccceeEEEEecCCh
Q 013008          328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLAS----------KLARNPHVKDVRGLGLIIGIEFDVSA  396 (451)
Q Consensus       328 ~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~~~  396 (451)
                      +++++++.+...  ..+++.++++++++.++|+.... +...++          .++++ .+....+.|.++++... ..
T Consensus       212 ~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~-~~  287 (337)
T 3p1t_A          212 GPSELIAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVASSEANFVLVENA-AG  287 (337)
T ss_dssp             CCHHHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSEEEEECT-TT
T ss_pred             eCHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEECCCCCeEEEEEcC-CH
Confidence            999999888643  34567788888888887763110 111111          22233 23335567778877663 35


Q ss_pred             HHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          397 TPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ..+.+.|.++||.+.++..   ++.+|+++.   +++++++++++|++++
T Consensus       288 ~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          288 ERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS  334 (337)
T ss_dssp             HHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence            6788888899999998642   478999755   7999999999988765

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.93  E-value=2.8e-25  Score=226.59  Aligned_cols=328  Identities=13%  Similarity=0.118  Sum_probs=206.2

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a  175 (451)
                      .|+.||||.++.++       |.|.+++.+++.....  .+.......+|+++++++++.++++||+||++|++.+++++
T Consensus        41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~--~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~  111 (467)
T 1ax4_A           41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE--AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL  111 (467)
T ss_dssp             GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC--CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred             CCceeeecccCcCC-------HHHHHHHHHHHhhccc--ccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHH
Confidence            47889999887653       6788888877654322  22345567899999999999999999999999999999998


Q ss_pred             HHHhhhcCCCCCCCCce---EEEEcCCcc-CChhhhhhccCCCCcCCCCc-CCCCCeeEeeC---CCHHHHHHhcCC---
Q 013008          176 RKFQRHSNPDSKEPATE---FVSFTNSFH-GRTMGALALTSKEHYRSPFE-PVMPGVNFVEY---GNIEATRKLIQP---  244 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~---ii~~~~~yh-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~d~~~le~~l~~---  244 (451)
                      +.+...       +++.   ||+.  .+| +.+...+...+......... ....+ ...++   .|+++|++++++   
T Consensus       112 ~~~~~~-------~Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~i~~~~~  181 (467)
T 1ax4_A          112 LKYKQK-------EGKAKNPVFIS--NFHFDTTAAHVELNGCKAINIVTEKAFDSE-TYDDWKGDFDIKKLKENIAQHGA  181 (467)
T ss_dssp             HHHHHH-------TTCCSSCEEEE--SSCCHHHHHHHHHTTCEEEECBCGGGGCTT-SCCTTTTCBCHHHHHHHHHHHCG
T ss_pred             HHhhcc-------CCCccceEEEe--ccccchhhHHHhccCCceeccccccccccc-ccCCcccccCHHHHHHHHHhcCC
Confidence            754210       2555   7776  444 44444444433221110000 00000 00112   289999999973   


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC---C-------CcccccccccccC----CCcce
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG---L-------GRTGYLWAHEHYG----IFPDI  310 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg---~-------gr~G~~~~~~~~~----~~pdi  310 (451)
                      .++++|+++++++++|+.+++.+++++|+++|++||++||+||++..   +       +..|..  ....+    ..+|+
T Consensus       182 ~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~  259 (467)
T 1ax4_A          182 DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT--IKEVIFDMYKYADA  259 (467)
T ss_dssp             GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC--HHHHHHHHGGGCSE
T ss_pred             CCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc--hhhhhhhhccccce
Confidence            36899999999888855788999999999999999999999998642   0       222211  00000    12566


Q ss_pred             e--eecccccCCcccc-ccccc-H-HHHhhccCC----CccCCCCCcHHHHHH-HHHHHHHhcChHHHHH----------
Q 013008          311 M--TLAKPLAGGLPIG-AALVT-E-KVASAINYG----DHGSTFAGSPLVCNA-AIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       311 ~--t~sK~lg~G~~iG-~v~~~-~-~i~~~~~~~----~~~~t~~~~~~~~aa-a~aal~~~~~~~~~~~----------  370 (451)
                      +  +++|++  |+|+| +++++ + ++++.+...    ....++++++..+.+ +.++++.+.+++.+++          
T Consensus       260 ~~~s~sK~~--g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~  337 (467)
T 1ax4_A          260 LTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGD  337 (467)
T ss_dssp             EEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccC--CCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            5  456665  45655 55566 6 777765321    112344444443333 3335665443222222          


Q ss_pred             -HHh-CCCCcceecccceeEEEE-------ec---CChHHHHHHH-HHCCceeeec-----------C-----CCCEEEE
Q 013008          371 -KLA-RNPHVKDVRGLGLIIGIE-------FD---VSATPVVDAC-RDSGLLVLTA-----------G-----KGNVVRL  421 (451)
Q Consensus       371 -~~~-~~~~~~~v~g~G~~~~~~-------~~---~~~~~~~~~l-~~~Gv~~~~~-----------~-----~~~~iri  421 (451)
                       +.+ .++.+  ....|.++++.       +.   .+..++++.| .++||.+.+.           +     ..+.+||
T Consensus       338 ~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRl  415 (467)
T 1ax4_A          338 RLREAGIPIQ--YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRL  415 (467)
T ss_dssp             HHHHTTCCBC--SSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred             HHHhCCCCcc--cCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEE
Confidence             222 12222  22346677777       31   1256788988 7899999872           1     0168999


Q ss_pred             eCC-CCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          422 VPP-LIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       422 ~~~-~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +++ ..+|++++++++++|++++++++.
T Consensus       416 s~~~~~~t~e~i~~~~~~l~~~~~~~~~  443 (467)
T 1ax4_A          416 TIARRVYTNDHMDYIADALIGLKEKFAT  443 (467)
T ss_dssp             ECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred             ecccccCCHHHHHHHHHHHHHHHHhhhc
Confidence            998 558999999999999999887653

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.93  E-value=2.6e-24  Score=222.34  Aligned_cols=316  Identities=15%  Similarity=0.080  Sum_probs=204.1

Q ss_pred             CCCHHHHHHHHHHHhhccccc--CCCCCH----HHHHHHHHHhhccCC----CeE--EecCCHHHHHHHHHHHHHHHhhh
Q 013008          114 HGDADWIKAVVDQANVLTHVS--NMYYSI----PQIELAKRLVACSFA----DRV--FFSNTGTEANEAAIKFARKFQRH  181 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~~~~--~~~~~~----~~~~l~~~l~~~~~~----e~v--~~~~sG~eA~~~al~~a~~~~~~  181 (451)
                      +.++.+.+++.+++.......  ......    ...+++++++++++.    +++  ++++||++|+..++++++.....
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~  186 (514)
T 3mad_A          107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA  186 (514)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence            356777777777775432211  111122    245677788888873    577  99999999999999999876432


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEcccc
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQ  256 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~  256 (451)
                      ..+.   ++++||+.+++|+++....... +.            ++..++.+     |+++|++++++ ++++|++++++
T Consensus       187 ~~g~---~~d~Vi~~~~~~~~~~~~~~~~-G~------------~v~~v~~~~~~~~d~~~Le~~i~~-~~~~v~~~~~~  249 (514)
T 3mad_A          187 TKGI---TAPEAVVPVSAHAAFDKAAQYF-GI------------KLVRTPLDADYRADVAAMREAITP-NTVVVAGSAPG  249 (514)
T ss_dssp             HHCC---SSCEEEEETTSCTHHHHHHHHH-TC------------EEEEECBCTTSCBCHHHHHHHCCT-TEEEEEEETTC
T ss_pred             hcCC---CCCeEEEeCccchHHHHHHHHc-CC------------eeEEeeeCCCCCCCHHHHHHHhcc-CCEEEEEeCCC
Confidence            1111   3589999999998765433222 21            13333333     89999999975 68888888888


Q ss_pred             CCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC-----cccc---cccccccCCCcceeeecccccCCcccccccc
Q 013008          257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-----RTGY---LWAHEHYGIFPDIMTLAKPLAGGLPIGAALV  328 (451)
Q Consensus       257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g-----r~G~---~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~  328 (451)
                      +++|.+.+    +++|+++|++||++||+||+|+++.     +.|.   .+.....++...+.+++|.+.+|.++|++++
T Consensus       250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~  325 (514)
T 3mad_A          250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY  325 (514)
T ss_dssp             TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred             CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence            88888766    9999999999999999999998762     2333   2333344543334456699887889999988


Q ss_pred             cHHHHhhccC----CC----------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceeccc
Q 013008          329 TEKVASAINY----GD----------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRGL  384 (451)
Q Consensus       329 ~~~i~~~~~~----~~----------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g~  384 (451)
                      +++.......    ..          .+.....+.+++.+++..+....-++..++          .+++++.+..+...
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  405 (514)
T 3mad_A          326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP  405 (514)
T ss_dssp             SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC
T ss_pred             eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC
Confidence            7665443211    00          111111223444444443332111122222          33445544433333


Q ss_pred             ceeEEEEec-CChHHHHHHHHHCCceeeecCCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008          385 GLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPP-LIISEQELDQAVEILCKTLPVLDSNS  450 (451)
Q Consensus       385 G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~~~~~  450 (451)
                      ..++++... .+..++.+.|.++||++.....++.+|++++ ...+++++++++++|+++++++++++
T Consensus       406 ~~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~  473 (514)
T 3mad_A          406 LWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHP  473 (514)
T ss_dssp             SSEEEEECSSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            446666653 4578899999999998854443578999887 55567999999999999999887553

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.93  E-value=8.4e-25  Score=220.22  Aligned_cols=315  Identities=14%  Similarity=0.064  Sum_probs=206.1

Q ss_pred             CEEEeeccCcccccCCCCC--HHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----CC--eEEecCCHHH
Q 013008           98 REYLDLSSGIAVNALGHGD--ADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTE  166 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~e--~v~~~~sG~e  166 (451)
                      ..+|||..|.+..+-|+.+  |.|++|+.+++++.. +.+  ..+..+.+.++++++....+    .+  ++++|+||++
T Consensus        49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~  128 (420)
T 4f4e_A           49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG  128 (420)
T ss_dssp             SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence            4679999997666677765  899999999987622 211  11223346666666654433    56  8999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----C---CHHHHH
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----G---NIEATR  239 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~le  239 (451)
                      |+..+++++....         ++|+|++.+|+|+++.......+..             +..+|.    +   |+++|+
T Consensus       129 al~~~~~~~~~~~---------~gd~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~  186 (420)
T 4f4e_A          129 ALKIGADFLRTLN---------PKAKVAISDPSWENHRALFDMAGFE-------------VVAYPYYDAKTNGVNFDGML  186 (420)
T ss_dssp             HHHHHHHHHHHHC---------TTCCEEEEESCCHHHHHHHHHTTCC-------------EEEEECEETTTTEECHHHHH
T ss_pred             HHHHHHHHHHHhC---------CCCEEEEeCCCcHhHHHHHHHcCCe-------------EEEeeeeccccCccCHHHHH
Confidence            9999987554332         6899999999999876554333221             222222    2   899999


Q ss_pred             HhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--ccccc----ccCCCccee
Q 013008          240 KLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHE----HYGIFPDIM  311 (451)
Q Consensus       240 ~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~----~~~~~pdi~  311 (451)
                      +.++.  .+++++++++.++++|. .++.+.+++|+++|++||+++|+||+|.+|++.+.  .....    ..+....+.
T Consensus       187 ~~l~~~~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~  265 (420)
T 4f4e_A          187 AALNGYEPGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSS  265 (420)
T ss_dssp             HHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEE
T ss_pred             HHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEE
Confidence            99972  45677777777777775 56899999999999999999999999999876541  11111    122223345


Q ss_pred             eeccccc-CCcccccccc---cHHHHhhc----cCCCccCCCCCcHHHHHHHHHHHHHhc--C--hHHHH----H-----
Q 013008          312 TLAKPLA-GGLPIGAALV---TEKVASAI----NYGDHGSTFAGSPLVCNAAIAVLDKIS--N--PAFLA----S-----  370 (451)
Q Consensus       312 t~sK~lg-~G~~iG~v~~---~~~i~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~--~--~~~~~----~-----  370 (451)
                      +|||.++ .|+|+||+++   ++++++.+    .......+.+.++++++++.++|+...  .  +++.+    +     
T Consensus       266 S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  345 (420)
T 4f4e_A          266 SFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMR  345 (420)
T ss_dssp             ECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999 5999999753   56655442    211123344457777777766665310  0  11111    1     


Q ss_pred             -----HHhCC---CCccee-cccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          371 -----KLARN---PHVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       371 -----~~~~~---~~~~~v-~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                           .++++   +.+... +..|++.++.+  ....+.+.|.++||++.|++     |+++. .++++++++++++|++
T Consensus       346 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~gI~v~~~~-----Ris~~-~~~~~~i~~~~~~l~~  417 (420)
T 4f4e_A          346 NGLVERLKAAGIERDFSFINAQRGMFSYSGL--TSAQVDRLREEFGIYAVSTG-----RICVA-ALNTRNLDVVANAIAA  417 (420)
T ss_dssp             HHHHHHHHHTTCSSCCTHHHHSCSSEEECCC--CHHHHHHHHHHHCEECCTTS-----EEEGG-GCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCceeECCCccEEEEeCC--CHHHHHHHHHhCCEEecCCC-----eEEEe-cCCHHHHHHHHHHHHH
Confidence                 12222   122222 34466666554  34556666778899998753     88765 4478889999999998


Q ss_pred             HH
Q 013008          442 TL  443 (451)
Q Consensus       442 ~l  443 (451)
                      ++
T Consensus       418 ~l  419 (420)
T 4f4e_A          418 VL  419 (420)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.93  E-value=7e-24  Score=212.09  Aligned_cols=307  Identities=15%  Similarity=0.058  Sum_probs=212.3

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCC-----CCHHHHHHHHHHhhccC--CCeEEecCCHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEAN  168 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~-----~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~  168 (451)
                      +..|+|+.++.      +.+|++.+++.++++..... ...+     ..+...+++++++++++  .+++++++||++|+
T Consensus        26 ~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al   99 (406)
T 3cai_A           26 GWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL   99 (406)
T ss_dssp             SCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred             CeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence            57888877643      47899999999998764211 1111     12347789999999987  46899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc---cCCCCcCCCCcCCCCCeeEeeCC------CHHHHH
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL---TSKEHYRSPFEPVMPGVNFVEYG------NIEATR  239 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------d~~~le  239 (451)
                      ..+++++.....        ++++||+.+++|++.......+   .|..            +..++.+      |+++|+
T Consensus       100 ~~~~~~l~~~~~--------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~------------v~~v~~~~~~~~~d~~~l~  159 (406)
T 3cai_A          100 SLLAEASSSRAG--------LGYEVIVSRLDDEANIAPWLRAAHRYGAK------------VKWAEVDIETGELPTWQWE  159 (406)
T ss_dssp             HHHHHHTGGGGB--------TTCEEEEETTSCGGGTHHHHHHHHHHBCE------------EEEECCCTTTCCCCGGGHH
T ss_pred             HHHHHHHhhccC--------CCCEEEEcCCccHHHHHHHHHHHHhcCCe------------EEEEecCcccCCcCHHHHH
Confidence            999886521111        5789999999998765433221   1211            1222222      789999


Q ss_pred             HhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccc
Q 013008          240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPL  317 (451)
Q Consensus       240 ~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~l  317 (451)
                      +.+++ ++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...  +....++  +|++  +++|.+
T Consensus       160 ~~l~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~  229 (406)
T 3cai_A          160 SLISK-STRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWG  229 (406)
T ss_dssp             HHCCT-TEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGT
T ss_pred             HHhCC-CceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhc
Confidence            99964 6889999998888888776    8999999999999999999996 33221  2223334  5665  567977


Q ss_pred             cCCcccc-cccccHHHHhhccCCCc---------cCCCCCcHHHHHHHHHHHHHhcC-----------------hHHHHH
Q 013008          318 AGGLPIG-AALVTEKVASAINYGDH---------GSTFAGSPLVCNAAIAVLDKISN-----------------PAFLAS  370 (451)
Q Consensus       318 g~G~~iG-~v~~~~~i~~~~~~~~~---------~~t~~~~~~~~aaa~aal~~~~~-----------------~~~~~~  370 (451)
                      |++  +| ++++++++++.+.+...         ....+.|+.+++++.++++.+..                 ++..++
T Consensus       230 g~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~  307 (406)
T 3cai_A          230 GPP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAY  307 (406)
T ss_dssp             SCS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHH
T ss_pred             CCC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHH
Confidence            643  88 99999999888765421         01234577777777778877644                 112211


Q ss_pred             ----------HHhCCCCcceecc---cceeEEEEec-CChHHHHHHHHHCCceeeecC------------CCCEEEEeCC
Q 013008          371 ----------KLARNPHVKDVRG---LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG------------KGNVVRLVPP  424 (451)
Q Consensus       371 ----------~~~~~~~~~~v~g---~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~------------~~~~iri~~~  424 (451)
                                .++.++.+.....   .+.++++.+. .+..++.+.|.++||.+.++.            ..+.+|++++
T Consensus       308 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~  387 (406)
T 3cai_A          308 LNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLA  387 (406)
T ss_dssp             HHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEee
Confidence                      2334554332222   2446777764 457789999999999998753            1267999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 013008          425 LIISEQELDQAVEILCK  441 (451)
Q Consensus       425 ~~~t~e~i~~~l~~l~~  441 (451)
                      ..+++|++++++++|++
T Consensus       388 ~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          388 HYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             TTCCHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            98999999999999875

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.93  E-value=3.3e-25  Score=219.61  Aligned_cols=296  Identities=14%  Similarity=0.116  Sum_probs=204.6

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--C--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~--e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      .+|++.+++.+++...   ..........+++++++++++  .  +++++++||++|+. +++.+.           .++
T Consensus        13 ~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~-----------~~g   77 (384)
T 3zrp_A           13 IKEDVLVAGLENNVGF---TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL-----------KPN   77 (384)
T ss_dssp             CCHHHHHHTTCCSCCT---TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC-----------CTT
T ss_pred             CCHHHHHHhhcccccc---ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc-----------CCC
Confidence            5788888887755321   111123347788999999887  3  67999999999999 887543           168


Q ss_pred             ceEEEEcCCccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCcccc
Q 013008          191 TEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA  264 (451)
Q Consensus       191 ~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~  264 (451)
                      |+||+.+++||+...... ...+.            .+..++.     .|+++|+++++++++++|+++++++++|.+.+
T Consensus        78 d~vi~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~  145 (384)
T 3zrp_A           78 DKILVVSNGVFGDRWEQIFKRYPV------------NVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP  145 (384)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTSSC------------EEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC
T ss_pred             CEEEEecCCcchHHHHHHHHHcCC------------cEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc
Confidence            999999999998533222 11121            1222222     28999999997656889999998888888776


Q ss_pred             CHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhc-cCCC-
Q 013008          265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAI-NYGD-  340 (451)
Q Consensus       265 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~-~~~~-  340 (451)
                          +++|.++|++||+++|+||+|+ ++...  .....  ..+|+++  ++|+++++.++|++++++++++.+ .+.. 
T Consensus       146 ----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~  216 (384)
T 3zrp_A          146 ----VKDVINKIRKYVELIVVDGVSS-VGAEE--VKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSI  216 (384)
T ss_dssp             ----HHHHHHHHGGGEEEEEEECTTT-TTTSC--CCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCS
T ss_pred             ----HHHHHHHHHhcCCEEEEECccc-ccCcc--ccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCC
Confidence                9999999999999999999996 32211  11222  2366665  559998777799999999987776 2110 


Q ss_pred             --------------------ccCCC-CCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceecc---
Q 013008          341 --------------------HGSTF-AGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVRG---  383 (451)
Q Consensus       341 --------------------~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~g---  383 (451)
                                          ....+ +.++..++++.++++.+...   ...++          .++.+. +.....   
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~  295 (384)
T 3zrp_A          217 AGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALG-LEIVARRPE  295 (384)
T ss_dssp             CCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSCSSGG
T ss_pred             CcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-CeEccCccc
Confidence                                12223 44666777777777765332   22222          222222 221222   


Q ss_pred             --cceeEEEEec-CChHHHHHHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          384 --LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       384 --~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                        .+.++++.+. .+..++.+.|.++||.+.++..  .+.+|+++...++++++++++++|++++++++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~  364 (384)
T 3zrp_A          296 SYSNTVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG  364 (384)
T ss_dssp             GBCSSEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCccEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence              3667777774 4678899999999999987652  16799999988999999999999999998865

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.93  E-value=2e-25  Score=219.10  Aligned_cols=306  Identities=12%  Similarity=0.092  Sum_probs=200.9

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARK  177 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~  177 (451)
                      +++|.++.    .|+.+|++.+++.+++..+.  ...+..+...+++++++++++  .+++++++||++|++.++++++.
T Consensus        15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~~--~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~   88 (359)
T 1svv_A           15 PYSFVNDY----SVGMHPKILDLMARDNMTQH--AGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR   88 (359)
T ss_dssp             CEECSCSC----SSCCCHHHHHHHHHHTTCCC--CSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred             eEEecCCC----cCCCCHHHHHHHHHHHhhcc--ccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence            66766532    45799999999999887532  233456678999999999887  56899999999999999998752


Q ss_pred             HhhhcCCCCCCCCceEEEEcCCccCChhh-hhhccCCCCcCCCCcCCCCCeeEeeCC----CHHHHHHhcCCC------C
Q 013008          178 FQRHSNPDSKEPATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEYG----NIEATRKLIQPG------K  246 (451)
Q Consensus       178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~------~  246 (451)
                                 ++++|++.+|+||+.... .....+.            .+..++.+    |+++|++.+++.      +
T Consensus        89 -----------~gd~vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~  145 (359)
T 1svv_A           89 -----------PWEAVIATQLGHISTHETGAIEATGH------------KVVTAPCPDGKLRVADIESALHENRSEHMVI  145 (359)
T ss_dssp             -----------TTEEEEEETTSHHHHSSTTHHHHTTC------------CEEEECCTTSCCCHHHHHHHHHHSCSTTSCE
T ss_pred             -----------CCCEEEEcccchHHHHHHHHHhcCCC------------eeEEEeCCCCeecHHHHHHHHHHHHhccCCC
Confidence                       588999999999987543 1221121            22233332    689999998643      3


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC--CcccccccccccC--CCcceeee--cccccCC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYG--IFPDIMTL--AKPLAGG  320 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~~~~~--~~pdi~t~--sK~lg~G  320 (451)
                      +++|+++++ +++|. ..+.+++++|+++|++||+++|+||+|.+|  |..+..  ....+  ..+|++++  +|. ++.
T Consensus       146 ~~~v~~~~~-~ptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~-g~~  220 (359)
T 1svv_A          146 PKLVYISNT-TEVGT-QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDMFYIGATKA-GGM  220 (359)
T ss_dssp             EEEEEEESS-CTTSC-CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSEEEEECTTT-TCS
T ss_pred             ceEEEEEcC-CCCce-ecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCEEEEecccC-CCC
Confidence            788888877 45665 557899999999999999999999999655  443321  11111  24677655  564 323


Q ss_pred             cccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcChH---HHHH----------HHhCCCCccee-ccc
Q 013008          321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNPA---FLAS----------KLARNPHVKDV-RGL  384 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~----------~~~~~~~~~~v-~g~  384 (451)
                      .++|++++++++++.+....  ...+++.++...++..++   +++..   ..++          .++ .+.+..+ ...
T Consensus       221 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~  296 (359)
T 1svv_A          221 FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGLE-ACGIRLAWPSA  296 (359)
T ss_dssp             SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHHH-HTTCCBSSCCS
T ss_pred             CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHhc-cCCeEEccCCc
Confidence            56688888988877765321  233333232333332222   33322   1111          122 2333222 233


Q ss_pred             ceeEEEEecCChHHHHHHHHHC-Cceeeec--CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          385 GLIIGIEFDVSATPVVDACRDS-GLLVLTA--GKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       385 G~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~--~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +.++++.+.   .++.+.|+++ ||++.+.  ...+.+|+++++.++++++++++++|+++++++
T Consensus       297 ~~~~~~~~~---~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          297 SNQLFPILE---NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             SSEECBEEE---HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             cceEEEEcC---HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence            455555543   5788999999 9988542  123689999999999999999999999988654

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.93  E-value=5.3e-25  Score=215.95  Aligned_cols=313  Identities=15%  Similarity=0.133  Sum_probs=200.2

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCC-eEEecCCHHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFAR  176 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e-~v~~~~sG~eA~~~al~~a~  176 (451)
                      ..+|||.++.    .++.+|++++|+.+++..  +...+...+...+++++++++++.+ .+++++||++|++.++++++
T Consensus         7 ~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~   80 (356)
T 1v72_A            7 PPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT   80 (356)
T ss_dssp             CCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC
T ss_pred             CceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc
Confidence            4689998763    357899999999987632  1222234566889999999998855 48999999999999999765


Q ss_pred             HHhhhcCCCCCCCCceEEEEcCCccCChhh-hhhcc--CCCCcCCCCcCCCCCeeEeeCCCHHHHHH-hcCCC------C
Q 013008          177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMG-ALALT--SKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPG------K  246 (451)
Q Consensus       177 ~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~------~  246 (451)
                                 .+++.|++.++.|...... .+...  +.....   .+.. +.    .-|+++|++ ++++.      +
T Consensus        81 -----------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~-~~----~~d~~~l~~~~i~~~~~~~~~~  141 (356)
T 1v72_A           81 -----------PPWGNIYCHPASHINNDECGAPEFFSNGAKLMT---VDGP-AA----KLDIVRLRERTREKVGDVHTTQ  141 (356)
T ss_dssp             -----------CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEE---CCCG-GG----CCCHHHHHHHTTSSTTCTTSCE
T ss_pred             -----------CCCCEEEEcCccchhhhhchHHHHHhCCcEEEE---ecCC-CC----eEcHHHHHHHhhhcchhhccCC
Confidence                       1578888887765432211 12222  221111   0110 00    128999999 88742      5


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC--cccccccccccC--CCccee--eecccccCC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG--RTGYLWAHEHYG--IFPDIM--TLAKPLAGG  320 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g--r~G~~~~~~~~~--~~pdi~--t~sK~lg~G  320 (451)
                      +++|++++.+ ++|. +++.+++++|+++|++||++||+||+|..+.  ..|..  ....+  ...|++  +++|+   |
T Consensus       142 ~~~v~~~~~~-~tG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g  214 (356)
T 1v72_A          142 PACVSITQAT-EVGS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G  214 (356)
T ss_dssp             EEEEEEESSC-TTSC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T
T ss_pred             ceEEEEEcCC-CCCc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C
Confidence            7899999865 5664 6789999999999999999999999986431  11211  11111  134555  46787   3


Q ss_pred             cccc--cccccHHHHhhccCC-CccCCCCCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCccee-cc
Q 013008          321 LPIG--AALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKDV-RG  383 (451)
Q Consensus       321 ~~iG--~v~~~~~i~~~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~v-~g  383 (451)
                      .|+|  ++++++++++.+... .+.++....  .+.++.++++.++++.+   .++          .++.++.+..+ +.
T Consensus       215 ~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  292 (356)
T 1v72_A          215 VLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGT  292 (356)
T ss_dssp             CSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCC
T ss_pred             CcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCC
Confidence            4776  777888888766432 112222221  12233344555544322   111          23334444332 34


Q ss_pred             cceeEEEEecCChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          384 LGLIIGIEFDVSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       384 ~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+.++++.+.   .++++.|.++||.+.++.. .+.+|+++++.++++++++++++|++++++.+
T Consensus       293 ~~~~~~~~~~---~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  354 (356)
T 1v72_A          293 EANILFCRLD---SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRTQ  354 (356)
T ss_dssp             CSSEEEEEEC---HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred             CccEEEEEcC---HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhhc
Confidence            4666777663   4788999999999986532 37899999999999999999999999887653

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.93  E-value=1.9e-25  Score=231.57  Aligned_cols=322  Identities=11%  Similarity=0.006  Sum_probs=203.7

Q ss_pred             ccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHhhccC-------CCeEEecCCHHHHHHHHHHHHHH--Hh
Q 013008          110 NALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVACSF-------ADRVFFSNTGTEANEAAIKFARK--FQ  179 (451)
Q Consensus       110 ~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~-------~e~v~~~~sG~eA~~~al~~a~~--~~  179 (451)
                      ...++.+|++++++.+++....+. +..+....+.++++.+.+..+       .+++++|+||++|+..+++.+..  +.
T Consensus       111 g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~  190 (533)
T 3f6t_A          111 TELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL  190 (533)
T ss_dssp             HTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcc
Confidence            344567889998888887653332 222334447777777765512       37999999999999999996422  11


Q ss_pred             hhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcC-CCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCC
Q 013008          180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP-VMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGE  258 (451)
Q Consensus       180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~  258 (451)
                              .++|.|++.+|+|+++.............. +..+ ...+...    |+++|++++.+ ++++|+++..+++
T Consensus       191 --------~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v-~~~~~~~~~~~~----d~~~l~~~l~~-~~k~v~l~~p~NP  256 (533)
T 3f6t_A          191 --------KKGDKIAINEPIFTPYLRIPELKDYELVEV-DLHSYEKNDWEI----EPNEIEKLKDP-SIKALIVVNPTNP  256 (533)
T ss_dssp             --------CTTCEEEEESSCCHHHHTSGGGGGSEEEEE-CCCEETTTTSEE----CHHHHHHHSCT-TEEEEEEESSCTT
T ss_pred             --------CCcCEEEEcCCCcHHHHHHHHHcCCeEEEE-EecCCcccCCCC----CHHHHHHHhCC-CCeEEEEeCCCCC
Confidence                    158999999999998764433222111100 0000 0001111    78999999975 5666666554555


Q ss_pred             CCccccCHHHHHHHHHHHH-HhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCcccccccccHH-----
Q 013008          259 GGIYSATKEFLQFLRDACD-DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK-----  331 (451)
Q Consensus       259 ~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~-----  331 (451)
                      +|. +++.+.+++|+++|+ +||+++|+||+|.+|...+........+....+.+|||.+| .|+|+||++++++     
T Consensus       257 tG~-~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~  335 (533)
T 3f6t_A          257 TSK-EFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDD  335 (533)
T ss_dssp             TCB-CCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHH
T ss_pred             Ccc-ccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHH
Confidence            564 568899999999999 69999999999998865433222222234456779999998 6999999999876     


Q ss_pred             HHhhc--------------------------------cCCCccCCCCCcHHHHHH----HHHHHHH----hcChHHHHH-
Q 013008          332 VASAI--------------------------------NYGDHGSTFAGSPLVCNA----AIAVLDK----ISNPAFLAS-  370 (451)
Q Consensus       332 i~~~~--------------------------------~~~~~~~t~~~~~~~~aa----a~aal~~----~~~~~~~~~-  370 (451)
                      +++.+                                .......+.+.+++.+++    ++++|..    -....+.++ 
T Consensus       336 li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~  415 (533)
T 3f6t_A          336 NIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIA  415 (533)
T ss_dssp             HHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHH
T ss_pred             HHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHH
Confidence            54433                                233344556677777766    4444420    001122211 


Q ss_pred             ----------HHhC--CCCcceecccceeEEEEec------------------CChHHHHHHHH-HCCceeeecCC----
Q 013008          371 ----------KLAR--NPHVKDVRGLGLIIGIEFD------------------VSATPVVDACR-DSGLLVLTAGK----  415 (451)
Q Consensus       371 ----------~~~~--~~~~~~v~g~G~~~~~~~~------------------~~~~~~~~~l~-~~Gv~~~~~~~----  415 (451)
                                +.+.  .+........|++.++++.                  ....+++..++ ++||++.|+..    
T Consensus       416 ~~~~~~r~~~l~~~L~~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~  495 (533)
T 3f6t_A          416 RKLVSERYDQLHDAMQAPKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK  495 (533)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS
T ss_pred             HHHHHHHHHHHHHhcCCCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCC
Confidence                      1111  3321112344667777663                  13456666666 67999987531    


Q ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          416 GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       416 ~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+.+|+++. .++++++++++++|.++++++.
T Consensus       496 ~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~  526 (533)
T 3f6t_A          496 PGELRVSQA-NLPTEDYALIGKQVLELLKEYY  526 (533)
T ss_dssp             TTEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHH
Confidence            367999763 3689999999999999998765

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.93  E-value=5.3e-25  Score=217.88  Aligned_cols=301  Identities=14%  Similarity=0.091  Sum_probs=199.0

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      .+|+|.+++.+++..  +. .....+...++++++++.++.    +.+++++||++|++.+++.+.           .++
T Consensus        30 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-----------~~g   95 (376)
T 3f0h_A           30 SSEEVRAIGAEQVPY--FR-TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-----------TKK   95 (376)
T ss_dssp             CCHHHHHHHTSCCCC--CS-SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-----------CTT
T ss_pred             CcHHHHHHhcCCCCC--CC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-----------CCC
Confidence            578888888765422  11 111123467788888888762    345559999999999999765           168


Q ss_pred             ceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHH
Q 013008          191 TEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL  269 (451)
Q Consensus       191 ~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l  269 (451)
                      |+||+.+++||+....... ..+....   ..+...+.    ..|+++|++++.+ ++++|+++++++++|.+.+    +
T Consensus        96 d~vi~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~----l  163 (376)
T 3f0h_A           96 DKVLVIDGGSFGHRFVQLCEIHEIPYV---ALKLEHGK----KLTKEKLYEYDNQ-NFTGLLVNVDETSTAVLYD----T  163 (376)
T ss_dssp             CCEEEEESSHHHHHHHHHHHHTTCCEE---EEECCTTC----CCCHHHHHTTTTS-CCCEEEEESEETTTTEECC----H
T ss_pred             CeEEEEeCChhhHHHHHHHHHcCCceE---EEeCCCCC----CCCHHHHHHhhcc-CceEEEEecccCCcceecC----H
Confidence            9999999999885433111 1121110   01111111    1289999998754 6778888888888888766    9


Q ss_pred             HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCc--------
Q 013008          270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH--------  341 (451)
Q Consensus       270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~--------  341 (451)
                      ++|+++|++||+++|+||+|+.+++.   +..+.+++.+.+.+++|+++++.++|++++++++++.+.....        
T Consensus       164 ~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~  240 (376)
T 3f0h_A          164 MMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLK  240 (376)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHH
T ss_pred             HHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHH
Confidence            99999999999999999999865432   2344556555556778999866678889999998887754211        


Q ss_pred             ---------cCCCCCcHHHHHHHHHHHHHhcCh----HHHHH-------HHh---CCCCcceec--ccceeEEEEe-cCC
Q 013008          342 ---------GSTFAGSPLVCNAAIAVLDKISNP----AFLAS-------KLA---RNPHVKDVR--GLGLIIGIEF-DVS  395 (451)
Q Consensus       342 ---------~~t~~~~~~~~aaa~aal~~~~~~----~~~~~-------~~~---~~~~~~~v~--g~G~~~~~~~-~~~  395 (451)
                               ...++.+..+++++.++++.+.+.    ...++       +.+   +++ +....  ..+.++.+.. ..+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~  319 (376)
T 3f0h_A          241 DALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP-FELVSESPANGVTSVHPTTAN  319 (376)
T ss_dssp             HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBBTTEEEEEESSSC
T ss_pred             HHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-CccCccccCceEEEEeCCCCC
Confidence                     113344555556777777765433    12221       222   222 11111  1223333333 346


Q ss_pred             hHHHHHHHHHC-CceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       396 ~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..++.+.|.++ ||.+.++.   .++.+|++++..+|+|++++++++|++++++
T Consensus       320 ~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          320 AYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            78899999998 99998763   1468999999999999999999999998864

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.93  E-value=1.5e-25  Score=222.78  Aligned_cols=304  Identities=17%  Similarity=0.103  Sum_probs=205.3

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      .+|++.+|+.+++..  +. .........+++++++++++.   +++++++||++|++.+++.+.           .+++
T Consensus        34 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-----------~~gd   99 (393)
T 3kgw_A           34 LAPRVLAAGSLRMIG--HM-QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-----------EPGD   99 (393)
T ss_dssp             CCHHHHHHTTCCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-----------CTTC
T ss_pred             CCHHHHHHhcccccC--cc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-----------CCCC
Confidence            678888888764321  11 111123467889999998872   369999999999999999764           2689


Q ss_pred             eEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008          192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      +||+.+++||+... ......+.....   .+...+.    ..|+++|++.++++++++|+++++++++|.+.+    ++
T Consensus       100 ~vl~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~----~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~  168 (393)
T 3kgw_A          100 SFLTGTNGIWGMRAAEIADRIGARVHQ---MIKKPGE----HYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP----LD  168 (393)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEE---EECCTTC----CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred             EEEEEeCCchhHHHHHHHHHcCCceEE---EeCCCCC----CCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc----HH
Confidence            99999999876432 222222211110   1111111    138999999997546788888888888887766    88


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccCCcccccccccHHHHhhccCCCc-------
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVTEKVASAINYGDH-------  341 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~~~i~~~~~~~~~-------  341 (451)
                      +|+++|++||++||+||+|+ +|  +..+..+.++  +|++++  +|+++++.++|++++++++++.+.....       
T Consensus       169 ~i~~l~~~~~~~li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~  243 (393)
T 3kgw_A          169 GFGELCHRYQCLLLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYT  243 (393)
T ss_dssp             THHHHHHHTTCEEEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred             HHHHHHHHcCCEEEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceee
Confidence            99999999999999999996 32  2222233333  566654  5999877779999999999888753211       


Q ss_pred             ----------------cCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCccee-----ccccee
Q 013008          342 ----------------GSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDV-----RGLGLI  387 (451)
Q Consensus       342 ----------------~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v-----~g~G~~  387 (451)
                                      ..+++.++.+++++.++++.+.++   +..++          .++++. +...     ...+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~  322 (393)
T 3kgw_A          244 DITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMG-LKFFVKDPEIRLPTI  322 (393)
T ss_dssp             CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGGBCSSE
T ss_pred             cHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCChhhcCCeE
Confidence                            113455788888888888765432   22222          222222 1111     122466


Q ss_pred             EEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008          388 IGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPVLDSN  449 (451)
Q Consensus       388 ~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~~~~~  449 (451)
                      +++.+.  .+..++.+.|+++ ||.+.++.   .++.+|+++ ++.++++++++++++|++++++++.+
T Consensus       323 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~  391 (393)
T 3kgw_A          323 TTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPKN  391 (393)
T ss_dssp             EEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence            667763  4578899999988 99998753   247899998 77779999999999999999887644

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.93  E-value=1.4e-24  Score=217.04  Aligned_cols=298  Identities=16%  Similarity=0.092  Sum_probs=199.6

Q ss_pred             CHHHHHHHHHHHh-hcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q 013008          116 DADWIKAVVDQAN-VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV  194 (451)
Q Consensus       116 ~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii  194 (451)
                      .+.+.+++..+.. ...+.+..+..+...+++++++++++.+.+++++||++|+..+++.+.           .++++||
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-----------~~gd~vi  107 (398)
T 2rfv_A           39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-----------QQGDHIV  107 (398)
T ss_dssp             CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEE
T ss_pred             cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEE
Confidence            4555555542111 122333445677789999999999997788899999999999999764           1588999


Q ss_pred             EEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHH
Q 013008          195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD  274 (451)
Q Consensus       195 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~  274 (451)
                      +.++.||+..........         .....+..++.+|+++|++.+++ ++++|+++++++++|.+.+    +++|++
T Consensus       108 ~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~  173 (398)
T 2rfv_A          108 SASAIYGCTHAFLSHSMP---------KFGINVRFVDAAKPEEIRAAMRP-ETKVVYIETPANPTLSLVD----IETVAG  173 (398)
T ss_dssp             EESSSCHHHHHHHHTHHH---------HTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSBTTTTBCCC----HHHHHH
T ss_pred             EcCCCcccHHHHHHHHHH---------HcCCEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccC----HHHHHH
Confidence            999999886543311100         01123456677799999999975 6889999999888888776    999999


Q ss_pred             HHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccC-Cccc-ccccccHHHHh-hccCCCccC-CCCCcHH
Q 013008          275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGS-TFAGSPL  350 (451)
Q Consensus       275 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~-t~~~~~~  350 (451)
                      +|++||+++|+||+|..+ ..+...   .++....+.+++|.+++ |+|+ |++++++++++ .+....... +.+.+++
T Consensus       174 l~~~~~~~li~De~~~~~-~~~~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (398)
T 2rfv_A          174 IAHQQGALLVVDNTFMSP-YCQQPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPF  249 (398)
T ss_dssp             HHHHTTCEEEEECTTTCT-TTCCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHH
T ss_pred             HHHHcCCEEEEECCCccc-ccCCch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHH
Confidence            999999999999999743 222221   23433444688999975 7898 99999998876 555433333 4677899


Q ss_pred             HHHHHHHHHHHhcC--hHHHHH------HHhCCC--------------Cccee----cccceeEEEEecCC---hHHHHH
Q 013008          351 VCNAAIAVLDKISN--PAFLAS------KLARNP--------------HVKDV----RGLGLIIGIEFDVS---ATPVVD  401 (451)
Q Consensus       351 ~~aaa~aal~~~~~--~~~~~~------~~~~~~--------------~~~~v----~g~G~~~~~~~~~~---~~~~~~  401 (451)
                      .++++.++|+.+..  +...++      .+++++              .+...    ++.|.++++++...   ...+.+
T Consensus       250 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~  329 (398)
T 2rfv_A          250 NAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMIN  329 (398)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHT
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHH
Confidence            99999988864321  111111      333332              11111    24688888888522   222333


Q ss_pred             HHHHCCceeeec-------------------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          402 ACRDSGLLVLTA-------------------------G-KGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       402 ~l~~~Gv~~~~~-------------------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      .+...|+.+.++                         + ..+.+|++++...+++++++++++|+++
T Consensus       330 ~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          330 SVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             TCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             hCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence            333335554433                         1 1378999999999999998888887653

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.93  E-value=2.9e-24  Score=213.83  Aligned_cols=280  Identities=16%  Similarity=0.139  Sum_probs=194.2

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..++++...+++++++++++.+..++++||++|+..+++.+.           .++++|++.++.||+.......... 
T Consensus        46 ~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~-----------~~g~~vl~~~~~~~~~~~~~~~~~~-  113 (386)
T 1cs1_A           46 YSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-----------KPGDLLVAPHDCYGGSYRLFDSLAK-  113 (386)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHHHT-
T ss_pred             eeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEecCCcHhHHHHHHHHHH-
Confidence            3455667788999999999986566666888999999999763           1588999999999874322111100 


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                              .....+..++.+|+++|++++++ ++++|+++++++++|.+.+    +++|+++|++||+++|+||+|+++.
T Consensus       114 --------~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~  180 (386)
T 1cs1_A          114 --------RGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPA  180 (386)
T ss_dssp             --------TTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             --------hcCCEEEEeCCCCHHHHHHhhcc-CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccc
Confidence                    11234556777899999999974 6788999999999898776    9999999999999999999998764


Q ss_pred             cccccccccccCCCcceeeecccccC-Cccc-ccccccH-HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hHHH
Q 013008          294 RTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFL  368 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~  368 (451)
                      .. ..  . .++....+.+++|++++ |.++ |++++++ ++++.+.+.....+.+.++++++++.++++.+..  +...
T Consensus       181 ~~-~~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  256 (386)
T 1cs1_A          181 LQ-NP--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQ  256 (386)
T ss_dssp             TC-CG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cC-Cc--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHHHHHHHHH
Confidence            32 11  1 23433334478999985 5666 9998875 8888776544444566789988887777764311  1111


Q ss_pred             HH------HHhCCCCcce------------------ecccceeEEEEecCChHHHHHHHHHCCceeeec--C--------
Q 013008          369 AS------KLARNPHVKD------------------VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--G--------  414 (451)
Q Consensus       369 ~~------~~~~~~~~~~------------------v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--~--------  414 (451)
                      ++      .+++++.+..                  .++.|.++.+.+......+.+.|.++||++.+.  +        
T Consensus       257 ~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~sl~~~  336 (386)
T 1cs1_A          257 RNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISH  336 (386)
T ss_dssp             HHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEcccCCCcceeeec
Confidence            11      3333332211                  134588888888544567788888899988641  1        


Q ss_pred             -------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          415 -------------------KGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       415 -------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                                         ..+.+|++++...++++++.+.+.|+++
T Consensus       337 ~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          337 AATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             GGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence                               1378999999877777766666665543

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.93  E-value=1.2e-24  Score=213.86  Aligned_cols=312  Identities=13%  Similarity=0.118  Sum_probs=208.9

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~  174 (451)
                      +++||..|    +++ .+|+|++|+.+++   .+.+..+......+++++++++++.    +++++++||++|++.++++
T Consensus         4 ~~~~~~~g----p~~-~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~   75 (366)
T 1m32_A            4 NYLLLTPG----PLT-TSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS   75 (366)
T ss_dssp             -CEECSSS----SCC-CCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred             ccccccCC----CcC-CCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence            35777776    233 7899999987743   1211101113367888888888872    3799999999999999997


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC-CeEEEEE
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-KTAAVFV  252 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~aavi~  252 (451)
                      ++.           ++++||++++.||+... ......|.....   .+....    ...|+++|+++++++ ++++|++
T Consensus        76 ~~~-----------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~----~~~d~~~l~~~l~~~~~~~~v~~  137 (366)
T 1m32_A           76 ALG-----------PQDKVLIVSNGAYGARMVEMAGLMGIAHHA---YDCGEV----ARPDVQAIDAILNADPTISHIAM  137 (366)
T ss_dssp             SCC-----------TTCCEEEEESSHHHHHHHHHHHHHTCCEEE---EECCTT----SCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             hcC-----------CCCeEEEEeCCCccHHHHHHHHHhCCceEE---EeCCCC----CCCCHHHHHHHHhcCCCeEEEEE
Confidence            641           57889999988887532 222222211100   111111    114899999998742 4566666


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccH
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTE  330 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~  330 (451)
                      ...++++|.+.+    +++|+++|++||+++|+||+|+ +|...  .....  ..+|++  +++|+++++.++|++++++
T Consensus       138 ~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~~K~~~~~~g~G~~~~~~  208 (366)
T 1m32_A          138 VHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAA--LHIDYLISSANKCIQGVPGFAFVIARE  208 (366)
T ss_dssp             ESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTT--TTCSEEEEESSSTTCCCSSEEEEEEEH
T ss_pred             ecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--ccccc--cCccEEEecCcccccCCCceEEEEECH
Confidence            666666777666    8999999999999999999996 43332  11222  236766  5689997666779999999


Q ss_pred             HHHhhccCCCc------------------cCCCCCcHHHHHHHHHHHHHhcCh----HHHHH----------HHhCCCCc
Q 013008          331 KVASAINYGDH------------------GSTFAGSPLVCNAAIAVLDKISNP----AFLAS----------KLARNPHV  378 (451)
Q Consensus       331 ~i~~~~~~~~~------------------~~t~~~~~~~~aaa~aal~~~~~~----~~~~~----------~~~~~~~~  378 (451)
                      ++++.+.....                  ...++.++++++++.++++.+...    ...++          .++++. +
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~-~  287 (366)
T 1m32_A          209 QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALG-F  287 (366)
T ss_dssp             HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred             HHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCC-C
Confidence            99888754211                  013567888888888888876432    12222          122222 2


Q ss_pred             ceec----ccceeEEEEecC----ChHHHHHHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          379 KDVR----GLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       379 ~~v~----g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ....    ..|.++++.+..    ...++.+.|.++||.+.++..  .+.+|++++..++++++++++++|+++++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  365 (366)
T 1m32_A          288 NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT  365 (366)
T ss_dssp             CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             eeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence            1111    246688888742    577899999999999988642  3789999999899999999999999887543

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.93  E-value=1.8e-24  Score=215.68  Aligned_cols=315  Identities=11%  Similarity=0.073  Sum_probs=201.9

Q ss_pred             CEEEeeccCcccccCCCCC--HHHHHHHHH-HHhhcc-cccC--CCCCHHHHHHHHHHhhccC----CC--eEEecCCHH
Q 013008           98 REYLDLSSGIAVNALGHGD--ADWIKAVVD-QANVLT-HVSN--MYYSIPQIELAKRLVACSF----AD--RVFFSNTGT  165 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~-~~~~~~-~~~~--~~~~~~~~~l~~~l~~~~~----~e--~v~~~~sG~  165 (451)
                      ..+|||..|.+..+.|+.+  |+|++++.+ +++... +.+.  .+..+.+.++++++....+    .+  ++++|+||+
T Consensus        26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~  105 (397)
T 3fsl_A           26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS  105 (397)
T ss_dssp             SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred             CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence            4589999997655566655  999999999 886522 1111  1122335566666654333    56  899999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----C---CHHHH
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----G---NIEAT  238 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~l  238 (451)
                      +|+..+++++....         ++++|++.+|+|+++.......+..             +..++.    +   |+++|
T Consensus       106 ~a~~~~~~~~~~~~---------~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l  163 (397)
T 3fsl_A          106 GALKVGADFLKRYF---------PESGVWVSDPTWENHVAIFAGAGFE-------------VSTYPWYDEATNGVRFNDL  163 (397)
T ss_dssp             HHHHHHHHHHHHHC---------TTCCEEEESSCCHHHHHHHHHTTCC-------------EEEECCEETTTTEECHHHH
T ss_pred             HHHHHHHHHHHhcC---------CCCeEEEeCCCchhHHHHHHHcCCc-------------eEEEeeeeccCCcCcHHHH
Confidence            99999987654332         5889999999999876544333221             222222    2   89999


Q ss_pred             HHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc--ccccc----cccCCCcce
Q 013008          239 RKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAH----EHYGIFPDI  310 (451)
Q Consensus       239 e~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~----~~~~~~pdi  310 (451)
                      ++.++.  .++++++++..++++|. .++.+.+++|+++|++||+++|+||+|.+|...+  .....    +..+....+
T Consensus       164 ~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  242 (397)
T 3fsl_A          164 LATLKTLQAGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVS  242 (397)
T ss_dssp             HHHHTTCCTTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEE
T ss_pred             HHHHHhCCCCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEE
Confidence            999973  35667776666666665 5788899999999999999999999999886542  11111    122333445


Q ss_pred             eeeccccc-CCcccccccc---cHHHHhhccCC----CccCCCCCcHHHHHHHHHHHHHhc--C--hHHH----HH----
Q 013008          311 MTLAKPLA-GGLPIGAALV---TEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKIS--N--PAFL----AS----  370 (451)
Q Consensus       311 ~t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~--~--~~~~----~~----  370 (451)
                      .++||.++ .|+|+||+++   ++++++.+...    ....+.+.++++++++.++++...  .  .++.    ++    
T Consensus       243 ~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~  322 (397)
T 3fsl_A          243 NSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAM  322 (397)
T ss_dssp             EECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999 6999999964   45655543211    112334446677777665554210  0  1111    11    


Q ss_pred             ------HHhCCC---Ccceec-ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          371 ------KLARNP---HVKDVR-GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       371 ------~~~~~~---~~~~v~-g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                            .++.++   .+.... ..|+++++.+  ....+.+.|.++||++.|++     |+++. .+++++|++++++|+
T Consensus       323 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~-----Ris~~-~~~~~~i~~~~~~l~  394 (397)
T 3fsl_A          323 RQELVKVLSTEMPERNFDYLLNQRGMFSYTGL--SAAQVDRLREEFGVYLIASG-----RMCVA-GLNTANVQRVAKAFA  394 (397)
T ss_dssp             HHHHHHHHHHHCTTSCCTHHHHCCSSEEECCC--CHHHHHHHHHTTCEECCTTC-----EEEGG-GCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCceeecCCceEEEecCC--CHHHHHHHHHhCCEEECCCC-----eEEEE-ecCHhhHHHHHHHHH
Confidence                  112221   122222 3466666554  34556667778899998764     88764 447788999999998


Q ss_pred             HHH
Q 013008          441 KTL  443 (451)
Q Consensus       441 ~~l  443 (451)
                      +++
T Consensus       395 ~~l  397 (397)
T 3fsl_A          395 AVM  397 (397)
T ss_dssp             HHC
T ss_pred             hhC
Confidence            763

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.93  E-value=5.7e-25  Score=220.73  Aligned_cols=324  Identities=14%  Similarity=0.059  Sum_probs=202.9

Q ss_pred             CCCEEEeeccCcccccCCC--CCHHHHHHHHH-HHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----CCeEEe--cCC
Q 013008           96 EGREYLDLSSGIAVNALGH--GDADWIKAVVD-QANVLT-HVS--NMYYSIPQIELAKRLVACSF----ADRVFF--SNT  163 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~-~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~--~~s  163 (451)
                      +|+.+|||.+|.+...-|+  .+|.+.+++.+ +++... +.+  ..+..+.+..+++++....+    .++|++  |+|
T Consensus        27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g  106 (412)
T 1yaa_A           27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS  106 (412)
T ss_dssp             CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred             CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence            3567899998876443443  56899999998 775321 111  11122224455555533322    679999  999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CC-CeeEeeCCCHHHHHHh
Q 013008          164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MP-GVNFVEYGNIEATRKL  241 (451)
Q Consensus       164 G~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~le~~  241 (451)
                      |++|++.+++++..+.         ++++|++.+|+|+++.......+.... .   .+. .+ +..    .|+++|++.
T Consensus       107 ~~~a~~~~~~~~~~~~---------~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~~~~----~d~~~l~~~  169 (412)
T 1yaa_A          107 GTGALHISAKFFSKFF---------PDKLVYLSKPTWANHMAIFENQGLKTA-T---YPYWANETKS----LDLNGFLNA  169 (412)
T ss_dssp             HHHHHHHHHHHHHHHC---------TTCCEEEEESCCTTHHHHHHTTTCCEE-E---EECEETTTTE----ECHHHHHHH
T ss_pred             hHhHHHHHHHHHHHhC---------CCCEEEEeCCCCccHHHHHHHcCceEE-E---EeeecCCCCc----cCHHHHHHH
Confidence            9999999977665442         578999999999997654433221111 0   011 00 111    279999998


Q ss_pred             cCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc---ccccc-cccCCCc------c
Q 013008          242 IQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLWAH-EHYGIFP------D  309 (451)
Q Consensus       242 l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~~~-~~~~~~p------d  309 (451)
                      +++.  ..+++++...++++| ..++.+.+++|.++|++||+++|+||+|.+|++.+   ..... ......+      .
T Consensus       170 l~~~~~~~~~~~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  248 (412)
T 1yaa_A          170 IQKAPEGSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFV  248 (412)
T ss_dssp             HHHSCTTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEE
T ss_pred             HHhCCCCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEE
Confidence            8632  244454344444455 46789999999999999999999999999886654   22122 1111123      2


Q ss_pred             eeeecccccC-Cccccccc--c-----cHH----HHhhccCCCccCCCCCcHHHHHHHHHHHHHhc----ChHHHHH---
Q 013008          310 IMTLAKPLAG-GLPIGAAL--V-----TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS----NPAFLAS---  370 (451)
Q Consensus       310 i~t~sK~lg~-G~~iG~v~--~-----~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~----~~~~~~~---  370 (451)
                      +.++||.++. |+|+||++  +     +++    +++.+.......+.+.++++++++.++|+...    -+++.++   
T Consensus       249 ~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  328 (412)
T 1yaa_A          249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS  328 (412)
T ss_dssp             EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             EeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4588999997 99999998  7     666    77766542223334558899999888887431    0011111   


Q ss_pred             -----------HHhCCC---Ccceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHH
Q 013008          371 -----------KLARNP---HVKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       371 -----------~~~~~~---~~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~  435 (451)
                                 .+++++   .+....+ .|+++++.+  +...+...+.++||++.+     .+|++++. +++++++++
T Consensus       329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~-----~~Ris~~~-~~~~~i~~~  400 (412)
T 1yaa_A          329 RITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--TPQMVKRLEETHAVYLVA-----SGRASIAG-LNQGNVEYV  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCT-----TSEEEGGG-CCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--CHHHHHHHHHhCCEEecc-----CcEEEEcc-CCHhHHHHH
Confidence                       122222   1222233 345555433  345554444478999986     26998774 589999999


Q ss_pred             HHHHHHHHHH
Q 013008          436 VEILCKTLPV  445 (451)
Q Consensus       436 l~~l~~~l~~  445 (451)
                      +++|+++++.
T Consensus       401 ~~~l~~~~~~  410 (412)
T 1yaa_A          401 AKAIDEVVRF  410 (412)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998864

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.93  E-value=5.5e-25  Score=220.08  Aligned_cols=316  Identities=17%  Similarity=0.146  Sum_probs=204.8

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhh-cccccC--CC--CCHHHHHHH----HHHhhccCCCeE-EecCCHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHVSN--MY--YSIPQIELA----KRLVACSFADRV-FFSNTGTEA  167 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~--~~--~~~~~~~l~----~~l~~~~~~e~v-~~~~sG~eA  167 (451)
                      ++|||+.++...  +   +|+|.+|+.+++.+ ..+.+.  .+  .......++    ++++++++.+.. +++++|++|
T Consensus        23 ~~~i~~~~~~~~--~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a   97 (407)
T 2dkj_A           23 REGLELIASENF--V---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA   97 (407)
T ss_dssp             HTSEECCTTCCC--C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred             hcceeeccCCCC--C---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence            467899888763  3   89999999998864 222211  11  223222232    478888885544 567789999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChh--hhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTM--GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  245 (451)
                      ++.+++++.           .++++|++.+++|++...  ..+...+.......+ +..++.   ...|+++|++.+++.
T Consensus        98 ~~~~~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~~~d~~~l~~~l~~~  162 (407)
T 2dkj_A           98 NMAVYMALM-----------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSY-GVRPDT---ELIDLEEVRRLALEH  162 (407)
T ss_dssp             HHHHHHHHC-----------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEE-CCCTTT---SSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhc-----------CCCCEEEEecccccCccchHHHHHhcCceEEEEec-CCCccc---CccCHHHHHHHHhhc
Confidence            999999774           158899999999988741  222222210000000 000000   113899999998632


Q ss_pred             CeEEEEE-ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC-CCcccccccccccCCCccee--eecccccCCc
Q 013008          246 KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL  321 (451)
Q Consensus       246 ~~aavi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~  321 (451)
                      ++++|++ +|+++   ...+    +++|.++|++||++||+||+|++ +...|....  ..+ .+|++  +++|+++ |.
T Consensus       163 ~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g~  231 (407)
T 2dkj_A          163 RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-GP  231 (407)
T ss_dssp             CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-CC
T ss_pred             CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-CC
Confidence            4566666 67765   3333    89999999999999999999975 433343211  111 26776  7899887 45


Q ss_pred             cccccccc-HHHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcC---hHHHHH----------HHhCCCCccee--ccc
Q 013008          322 PIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISN---PAFLAS----------KLARNPHVKDV--RGL  384 (451)
Q Consensus       322 ~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~----------~~~~~~~~~~v--~g~  384 (451)
                      ++|+++++ +++++.+.... ...+.+.++..++++.++++.+..   +++.++          .++.++ +..+  ++.
T Consensus       232 ~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~  310 (407)
T 2dkj_A          232 RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG-YRIVTGGTD  310 (407)
T ss_dssp             SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCS
T ss_pred             CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC-ceeecCCCC
Confidence            78999999 89888775432 233344567777777788876533   222222          222232 2222  356


Q ss_pred             ceeEEEEecC---ChHHHHHHHHHCCceeeecC---------CCCEEEEeCCC----CCCHHHHHHHHHHHHHHHHH
Q 013008          385 GLIIGIEFDV---SATPVVDACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       385 G~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~  445 (451)
                      |.++++.+..   ...++.+.|.++||.+.++.         .++.+|++++.    .++++++++++++|++++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          311 NHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             SSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             ceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence            8888888842   57789999999999998752         13679998765    37999999999999999876

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.92  E-value=2e-24  Score=216.14  Aligned_cols=299  Identities=13%  Similarity=0.095  Sum_probs=202.7

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e-~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      .+|++.+++.+++.  .+. .........+++++++++++  .+ .+++++||++|++.+++.+.           .+++
T Consensus        24 ~~~~v~~a~~~~~~--~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~-----------~~gd   89 (411)
T 3nnk_A           24 ADPRVLRAMSSQLI--GQY-DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI-----------RPGD   89 (411)
T ss_dssp             CCHHHHHHHTSCCC--CTT-CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC-----------CTTC
T ss_pred             CCHHHHHHhhcccc--ccc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc-----------CCCC
Confidence            57888888776431  111 00112336788899998887  33 48899999999999999774           2689


Q ss_pred             eEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccCCCCccccC
Q 013008          192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSAT  265 (451)
Q Consensus       192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~  265 (451)
                      +||+.+++||+... ......+.            .+..++.+     |+++|+++++++++++|+++++++++|.+.+ 
T Consensus        90 ~Vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-  156 (411)
T 3nnk_A           90 KVLVPVFGRFGHLLCEIARRCRA------------EVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP-  156 (411)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-
T ss_pred             EEEEecCCchHHHHHHHHHHcCC------------eEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc-
Confidence            99999999988421 11122221            12223322     8999999997446788888888888888766 


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCC-----
Q 013008          266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD-----  340 (451)
Q Consensus       266 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~-----  340 (451)
                         +++|+++|++||+++|+||+++ +|..  .+....+++...+.+++|+++++.++|++++++++++.+....     
T Consensus       157 ---l~~i~~l~~~~~~~li~Dea~~-~~~~--~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~  230 (411)
T 3nnk_A          157 ---LAELGEICRRYDALFYTDATAS-LGGN--PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEG  230 (411)
T ss_dssp             ---CTTHHHHHHHHTCEEEEECTTT-BTTB--CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGG
T ss_pred             ---HHHHHHHHHHcCCEEEEECCcc-cCCc--ccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccc
Confidence               8899999999999999999986 3221  1223333433333456698877778999999999887765321     


Q ss_pred             -------------------------------ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCC
Q 013008          341 -------------------------------HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNP  376 (451)
Q Consensus       341 -------------------------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~  376 (451)
                                                     .....+.++.+++++.++++.+...   +..++          .++...
T Consensus       231 ~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g  310 (411)
T 3nnk_A          231 IRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMG  310 (411)
T ss_dssp             GCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                           0112345777888887888765432   22222          122222


Q ss_pred             Cccee----cccceeEEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q 013008          377 HVKDV----RGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       377 ~~~~v----~g~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                       +...    ...+.++++.+.  .+..++.+.|+++ ||.+.++.   .++.+|+++ +..++++++++++++|++++++
T Consensus       311 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  389 (411)
T 3nnk_A          311 -LETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNY  389 (411)
T ss_dssp             -CCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             -CEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHH
Confidence             1111    123667777773  4578899999887 99998752   246899997 7788999999999999999987


Q ss_pred             Hh
Q 013008          446 LD  447 (451)
Q Consensus       446 ~~  447 (451)
                      +.
T Consensus       390 ~~  391 (411)
T 3nnk_A          390 LK  391 (411)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.92  E-value=1.3e-23  Score=207.68  Aligned_cols=310  Identities=14%  Similarity=0.087  Sum_probs=207.1

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC------CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY------YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA  171 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~a  171 (451)
                      |+|+.++      +..+|.+.+++.+++.+........      ..+...+++++++++++  .+++++++||++|+..+
T Consensus         3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~   76 (382)
T 4hvk_A            3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA   76 (382)
T ss_dssp             BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred             eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence            6776653      3578999999999987632211111      12235688999999887  45899999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc--cCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCC
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQP  244 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~  244 (451)
                      ++++.....       .+++.||+.++.|++.......+  .+.            .+..++.+     |+++|++++++
T Consensus        77 ~~~~~~~~~-------~~gd~vi~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~  137 (382)
T 4hvk_A           77 IIGYAMRNA-------RKGKHILVSAVEHMSVINPAKFLQKQGF------------EVEYIPVGKYGEVDVSFIDQKLRD  137 (382)
T ss_dssp             HHHHHHHHG-------GGCCEEEEETTCCHHHHHHHHHHHHTTC------------EEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             HHHhhhhhc-------CCCCEEEECCCCcHHHHHHHHHHHhcCC------------EEEEeccCCCCCcCHHHHHHHhcc
Confidence            997653211       05889999999998765443222  111            12222222     89999999975


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcc
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLP  322 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~  322 (451)
                       ++++|+++++++++|.+.+    +++|.++|++||+ +|+||+|+ +|..  .......+  +|++  +++|.+| +.+
T Consensus       138 -~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~g-~~g  205 (382)
T 4hvk_A          138 -DTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIG--ADMLTISSNDIYG-PKG  205 (382)
T ss_dssp             -TEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHT--CSEEEEESGGGTS-CTT
T ss_pred             -CceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcC--CCEEEEeHHHhcC-CCc
Confidence             6789999999888888776    8999999999999 99999985 3221  11222333  4555  5679654 234


Q ss_pred             cccccccHHHHhhccCCCc-------cCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCCCCcceecc
Q 013008          323 IGAALVTEKVASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARNPHVKDVRG  383 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~-------~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~~~~~~v~g  383 (451)
                      +|+++++++.  .+.+...       ....+.++..++++.++++.+.+  +...++          .++.+|.+.....
T Consensus       206 ~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  283 (382)
T 4hvk_A          206 VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGH  283 (382)
T ss_dssp             CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSC
T ss_pred             eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC
Confidence            7888777654  2222211       11334467777777777765432  122221          2334554432222


Q ss_pred             c----ceeEEEEec-CChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCCHHHHHHHH
Q 013008          384 L----GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       384 ~----G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t~e~i~~~l  436 (451)
                      .    +.++.+.+. .+..++.+.|.++||.+.++..                      .+.+|++++..+|+|++++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~  363 (382)
T 4hvk_A          284 PEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLL  363 (382)
T ss_dssp             SSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHH
T ss_pred             ccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHH
Confidence            2    245666663 4678899999999999987530                      268999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 013008          437 EILCKTLPVLDS  448 (451)
Q Consensus       437 ~~l~~~l~~~~~  448 (451)
                      ++|++++++++.
T Consensus       364 ~~l~~~~~~~~~  375 (382)
T 4hvk_A          364 EVLPGVIERLRS  375 (382)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.92  E-value=8.5e-25  Score=213.35  Aligned_cols=296  Identities=16%  Similarity=0.127  Sum_probs=192.9

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAI  172 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~al  172 (451)
                      .+++||.++..  .++ .+|++.+++.+++.+...  ..++.....++++.++++++     .+++++++||++|+..++
T Consensus        19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~   93 (335)
T 1uu1_A           19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSDAL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM   93 (335)
T ss_dssp             CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGGGG--GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred             CcceECCCCCC--CCC-CCHHHHHHHHHHhhhhhh--hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence            46899988865  455 689999999998733211  11222225567777777665     579999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEE-
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF-  251 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi-  251 (451)
                      +++              +++|++. |+||++.......+. ....   .+...+.. +   |+++|     + ++++|+ 
T Consensus        94 ~~~--------------gd~Vl~~-p~y~~~~~~~~~~g~-~~~~---v~~~~~~~-~---d~~~l-----~-~~~~v~l  144 (335)
T 1uu1_A           94 LMF--------------DRSVFFP-PTYSCYRIFAKAVGA-KFLE---VPLTKDLR-I---PEVNV-----G-EGDVVFI  144 (335)
T ss_dssp             HHS--------------SEEEECS-SSCHHHHHHHHHHTC-EEEE---CCCCTTSC-C---CCCCC-----C-TTEEEEE
T ss_pred             HHh--------------CCcEEEC-CCcHHHHHHHHHcCC-eEEE---eccCCCCC-C---CHHHc-----C-CCCEEEE
Confidence            854              2579999 999998754433222 1111   11111110 1   33333     2 455665 


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCCCcceeeeccccc-CCccccccccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVT  329 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~  329 (451)
                      ++| ++++|. +++.+++++|+++|   | ++|+||+|++|+. +.... .+..+....+.++||.+| +|+|+|+++++
T Consensus       145 ~~p-~nptG~-~~~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~  217 (335)
T 1uu1_A          145 PNP-NNPTGH-VFEREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS  217 (335)
T ss_dssp             ESS-CTTTCC-CCCHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred             eCC-CCCCCC-CCCHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeC
Confidence            666 455565 45777777776666   8 8999999987643 22111 222333455678999998 78999999999


Q ss_pred             HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHHHHH----------HHhCCCCcceecccceeEEEEecC-ChH
Q 013008          330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLAS----------KLARNPHVKDVRGLGLIIGIEFDV-SAT  397 (451)
Q Consensus       330 ~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~-~~~  397 (451)
                      +++++.+...  ..+++.|+++++++.++|+..+ -+++.++          .+++++ +...++.|.++++.+.. +..
T Consensus       218 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~  294 (335)
T 1uu1_A          218 EKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG-YRITDSRGNFVFVFMEKEEKE  294 (335)
T ss_dssp             HHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCCSSEEEEECCTHHHH
T ss_pred             HHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-cEEcCCCCeEEEEECCCCCHH
Confidence            9998887643  2357889999999999887421 0111111          112222 22235567788887743 456


Q ss_pred             HHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          398 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       398 ~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      ++.+.|.++||.+.+. . +.+|+++.   +++++++++++|+++
T Consensus       295 ~~~~~l~~~gi~v~~~-~-~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          295 RLLEHLRTKNVAVRSF-R-EGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             HHHHHHHHHTEEEEEE-T-TEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCEEEEEC-C-CeEEEEeC---CHHHHHHHHHHHHhh
Confidence            7889999999999984 3 68999764   468899999998754

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.92  E-value=6.4e-24  Score=211.89  Aligned_cols=277  Identities=16%  Similarity=0.147  Sum_probs=194.2

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+..+.++...+|+++|+++++.+.+++++||++|++.+++.+.           .++++||+.++.||+.........
T Consensus        58 ~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~-----------~~gd~Vi~~~~~y~~~~~~~~~~~  126 (392)
T 3qhx_A           58 YEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAML-----------RPGDHVVIPDDAYGGTFRLIDKVF  126 (392)
T ss_dssp             BCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHTG
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEeCCCcchHHHHHHHHH
Confidence            334556677789999999999998899999999999999999664           158899999999987643321110


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                               ......+.+++.+|+++|++++++ ++++|++|++++++|.+.+    +++|+++|++||+++|+||+|+.
T Consensus       127 ---------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~  192 (392)
T 3qhx_A          127 ---------TGWNVEYTPVALADLDAVRAAIRP-TTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFAS  192 (392)
T ss_dssp             ---------GGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTC
T ss_pred             ---------HhcCcEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCcc
Confidence                     112234567788899999999975 7899999999999898776    99999999999999999999963


Q ss_pred             CCcccccccccccCCCcceee--ecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--
Q 013008          292 LGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--  364 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--  364 (451)
                      + ..     ....+..+|+++  ++|.+++ | +++|+++++ +++++.+....+..++..+|+.++++...++.+..  
T Consensus       193 ~-~~-----~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~  266 (392)
T 3qhx_A          193 P-AL-----QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRM  266 (392)
T ss_dssp             T-TT-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHH
T ss_pred             c-cc-----CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHH
Confidence            2 22     222234577775  8899986 5 789999987 68888776544445677889998888877764321  


Q ss_pred             hHHHHH------HHhCCCCccee------------------cccceeEEEEecC---ChHHHHHHHHHCCceeeecC---
Q 013008          365 PAFLAS------KLARNPHVKDV------------------RGLGLIIGIEFDV---SATPVVDACRDSGLLVLTAG---  414 (451)
Q Consensus       365 ~~~~~~------~~~~~~~~~~v------------------~g~G~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~~---  414 (451)
                      +...++      .++.+|.+..+                  ++.|.++++++..   ....+...|...|+.+..++   
T Consensus       267 ~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~s  346 (392)
T 3qhx_A          267 QRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVES  346 (392)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred             HHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCc
Confidence            111111      44555544333                  5668899999953   23455555544454433221   


Q ss_pred             --------------------CCCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          415 --------------------KGNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       415 --------------------~~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                                          ..+.+|+++....++++++.+.++|
T Consensus       347 l~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          347 LIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             EEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             eeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence                                1356899877765555555544443

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.92  E-value=5.3e-23  Score=203.67  Aligned_cols=311  Identities=14%  Similarity=0.090  Sum_probs=209.1

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCC-----CHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYY-----SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA  171 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~-----~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~a  171 (451)
                      |+|+.++      |+.+|+|++++.+++.+...... .+.     .....+++++++++++  .+++++++||++|+..+
T Consensus         3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~   76 (382)
T 4eb5_A            3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA   76 (382)
T ss_dssp             BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred             eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence            6776664      46899999999999876311111 111     2346789999999888  45899999999999999


Q ss_pred             HHHHHHHh-hhcCCCCCCCCceEEEEcCCccCChhhhhhc--cCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcC
Q 013008          172 IKFARKFQ-RHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQ  243 (451)
Q Consensus       172 l~~a~~~~-~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~  243 (451)
                      ++++..+. .        +++.|++.+++|++.......+  .|.            .+..++.     .|+++|++.++
T Consensus        77 ~~~l~~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~  136 (382)
T 4eb5_A           77 IIGYAMRNAR--------KGKHILVSAVEHMSVINPAKFLQKQGF------------EVEYIPVGKYGEVDVSFIDQKLR  136 (382)
T ss_dssp             HHHHHHHHGG--------GCCEEEEETTCCHHHHHHHHHHTTTTC------------EEEEECBCTTSCBCHHHHHHHCC
T ss_pred             HHHHHhhccC--------CCCEEEECCCcchHHHHHHHHHHhCCc------------EEEEeccCCCCccCHHHHHHHhc
Confidence            99876321 2        5789999999998765443221  111            1222222     28999999997


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCc
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL  321 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~  321 (451)
                      + ++++|+++.+++++|.+.+    +++|.++|++||++ |+||+|+ +|...  .....+  .+|++  +++|.+|. .
T Consensus       137 ~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s~sK~~g~-~  204 (382)
T 4eb5_A          137 D-DTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTISSNDIYGP-K  204 (382)
T ss_dssp             T-TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEETGGGTCC-S
T ss_pred             C-CCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEeehHHhcCC-C
Confidence            5 5788888888888888776    89999999999999 9999996 54321  112222  35665  56797543 2


Q ss_pred             ccccccccHHH-HhhccCC----CccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCCCCcceeccc
Q 013008          322 PIGAALVTEKV-ASAINYG----DHGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARNPHVKDVRGL  384 (451)
Q Consensus       322 ~iG~v~~~~~i-~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~~~~~~v~g~  384 (451)
                      ++|+++++++. +..+...    ......+.++..++++.++++.+.+  +...++          .++++|.+......
T Consensus       205 g~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  284 (382)
T 4eb5_A          205 GVGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHP  284 (382)
T ss_dssp             SCEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCS
T ss_pred             ceEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCc
Confidence            37888887763 2111111    0112234566677777777776532  111111          23345444323222


Q ss_pred             ----ceeEEEEec-CChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCCHHHHHHHHH
Q 013008          385 ----GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       385 ----G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t~e~i~~~l~  437 (451)
                          +.++++.+. .+..++.+.|.++||.+.++..                      .+.+|++++..+++|+++++++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (382)
T 4eb5_A          285 EKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE  364 (382)
T ss_dssp             SSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHH
T ss_pred             ccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHH
Confidence                556777774 4577899999999999987531                      2689999888889999999999


Q ss_pred             HHHHHHHHHhh
Q 013008          438 ILCKTLPVLDS  448 (451)
Q Consensus       438 ~l~~~l~~~~~  448 (451)
                      +|++++++++.
T Consensus       365 ~l~~~~~~~~~  375 (382)
T 4eb5_A          365 VLPGVIERLRS  375 (382)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.92  E-value=1e-23  Score=209.76  Aligned_cols=314  Identities=13%  Similarity=0.060  Sum_probs=208.8

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF  174 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~  174 (451)
                      ...|+|..+      .++.+|.+.+++.+++..  +. .........+++++++++++  .+++++++||++|+..++++
T Consensus         8 ~~~yl~~~~------~~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~   78 (392)
T 2z9v_A            8 DPVITLTAG------PVNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAAS   78 (392)
T ss_dssp             CCSEECSSS------CCCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHH
T ss_pred             CcceeecCC------CcCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHH
Confidence            346777543      246889999998876643  11 11112236789999999987  46999999999999999997


Q ss_pred             HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC-CCCeEEEEE
Q 013008          175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PGKTAAVFV  252 (451)
Q Consensus       175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~aavi~  252 (451)
                      +.           .++++|++.+++||+.....+ ...|.....   .+...+.    ..|+++|+++++ ..++++|++
T Consensus        79 ~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~~v~~  140 (392)
T 2z9v_A           79 LI-----------SPDDVVLNLASGVYGKGFGYWAKRYSPHLLE---IEVPYNE----AIDPQAVADMLKAHPEITVVSV  140 (392)
T ss_dssp             HC-----------CTTCCEEEEESSHHHHHHHHHHHHHCSCEEE---EECCTTS----CCCHHHHHHHHHHCTTCCEEEE
T ss_pred             hc-----------CCCCEEEEecCCcccHHHHHHHHHcCCceEE---eeCCCCC----CCCHHHHHHHHhcCCCCcEEEE
Confidence            63           158899999999988631111 111211100   1111110    138999999995 235778888


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccH
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTE  330 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~  330 (451)
                      +++++++|.+.+    +++|.++|++||+++|+||+|+ +|...  .....+  .+|+++  ++|+++++.++|++++++
T Consensus       141 ~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~sK~~~~~~g~G~l~~~~  211 (392)
T 2z9v_A          141 CHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGMK--THPEDC--KADIYVTGPNKCLGAPPGLTMMGVSE  211 (392)
T ss_dssp             ESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBS--CCGGGG--TCSEEEECSSSTTCCCSCCEEEEECH
T ss_pred             eccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCcc--cccccc--cceEEEecCcccccCCCceeEEEECH
Confidence            888888887766    8999999999999999999996 43221  122222  366664  579887656679999999


Q ss_pred             HHHhhccCCC--------------------ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCC
Q 013008          331 KVASAINYGD--------------------HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPH  377 (451)
Q Consensus       331 ~i~~~~~~~~--------------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~  377 (451)
                      ++++.+....                    .....+.++.+++++.++++.+.+.   .+.++          .++++. 
T Consensus       212 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-  290 (392)
T 2z9v_A          212 RAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMG-  290 (392)
T ss_dssp             HHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            9887664210                    1112345677777777777765322   12222          122222 


Q ss_pred             cceec-c----cceeEEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeCCC-CCCHHHHHHHHHHHHHHHHH
Q 013008          378 VKDVR-G----LGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVPPL-IISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       378 ~~~v~-g----~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~~~-~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +.... .    .+.++++.+.  .+..++.+.|.++ ||.+.++.   ..+.+|+++.. .++++++++++++|++++++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~  370 (392)
T 2z9v_A          291 LSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA  370 (392)
T ss_dssp             CCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence            22122 1    4667777773  3577899999997 99998763   23789998543 78999999999999999987


Q ss_pred             Hh
Q 013008          446 LD  447 (451)
Q Consensus       446 ~~  447 (451)
                      ++
T Consensus       371 ~~  372 (392)
T 2z9v_A          371 AG  372 (392)
T ss_dssp             TT
T ss_pred             cC
Confidence            64

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.92  E-value=9.6e-25  Score=222.67  Aligned_cols=332  Identities=13%  Similarity=0.081  Sum_probs=197.8

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR  176 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~  176 (451)
                      |+.||||.++.++       |+|.+++.+++.....  .+.......+|+++++++++.++++|++||++|++.|+++++
T Consensus        40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~--~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~  110 (467)
T 2oqx_A           40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGDE--AYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLI  110 (467)
T ss_dssp             GGCSEECSCCSSC-------SCCCHHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHH
T ss_pred             CCeeEecccCCCc-------HHHHHHHHHHhccCcc--eeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHh
Confidence            6789999887663       7888998888754221  223355578999999999999999999999999999999987


Q ss_pred             HHh-hhcCCCCCCCC-ceEEEEcCCccCChhhhhhc-cCCCCcCC-CCcCCCCCeeEeeC---CCHHHHHHhcCC---CC
Q 013008          177 KFQ-RHSNPDSKEPA-TEFVSFTNSFHGRTMGALAL-TSKEHYRS-PFEPVMPGVNFVEY---GNIEATRKLIQP---GK  246 (451)
Q Consensus       177 ~~~-~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~---~d~~~le~~l~~---~~  246 (451)
                      ..+ ...+.    ++ |+||+.  .||+.+...... .+...... ...+...+ ...++   .|+++|+++++.   .+
T Consensus       111 ~~~~~~~G~----~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~Le~~i~~~~~~~  183 (467)
T 2oqx_A          111 KKREQEKGL----DRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIKEAFDTG-VRYDFKGNFDLEGLERGIEEVGPNN  183 (467)
T ss_dssp             HHHHHHHCC----CTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCTTTTCTT-SCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred             ccccccCCC----CccceEEec--ccccccchhhhhccCcceeeccccccccCC-CCCCccCCcCHHHHHHHHHhcCCCc
Confidence            542 00010    12 676665  578654332221 11111000 00000001 00111   289999999973   36


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC----------CCcccc---cccccccCCCcce--e
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----------LGRTGY---LWAHEHYGIFPDI--M  311 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----------~gr~G~---~~~~~~~~~~pdi--~  311 (451)
                      +++|+++++++++|+.+++.+++++|+++|++||++||+|+++..          .+..|.   .+..+.+ ..+|+  .
T Consensus       184 ~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~  262 (467)
T 2oqx_A          184 VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAM  262 (467)
T ss_dssp             CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEE
T ss_pred             eeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEE
Confidence            899999998887655688999999999999999999999966532          123332   1110000 11343  5


Q ss_pred             eecccccCCccc-ccccccHH-HHh---hccCC----CccCCCCCcHH-HHHHHHHHHHHhcChHHHHH----------H
Q 013008          312 TLAKPLAGGLPI-GAALVTEK-VAS---AINYG----DHGSTFAGSPL-VCNAAIAVLDKISNPAFLAS----------K  371 (451)
Q Consensus       312 t~sK~lg~G~~i-G~v~~~~~-i~~---~~~~~----~~~~t~~~~~~-~~aaa~aal~~~~~~~~~~~----------~  371 (451)
                      +++|+++  .|+ |+++++++ +++   .+...    ....++++.+. ++++....++...+++.+++          .
T Consensus       263 s~sK~~g--~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~  340 (467)
T 2oqx_A          263 SAKKDAM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG  340 (467)
T ss_dssp             ESSSTTC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ecccccC--CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence            6788885  354 56666655 333   33211    11122333222 22222223332222222211          2


Q ss_pred             HhCCCCcceecccceeEEEEec-----CC-----hHHHHHHH-HHCCceeeecCC----------------CCEEEEeCC
Q 013008          372 LARNPHVKDVRGLGLIIGIEFD-----VS-----ATPVVDAC-RDSGLLVLTAGK----------------GNVVRLVPP  424 (451)
Q Consensus       372 ~~~~~~~~~v~g~G~~~~~~~~-----~~-----~~~~~~~l-~~~Gv~~~~~~~----------------~~~iri~~~  424 (451)
                      +++.. +..+...|.++++.+.     .+     ...+++.| .++||.+.|++.                .+.+|++++
T Consensus       341 L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~  419 (467)
T 2oqx_A          341 LEEIG-VVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP  419 (467)
T ss_dssp             HHHTT-CCEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCC
T ss_pred             HHHCC-CeeecCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEec
Confidence            22222 2112334667777762     12     34468888 789999987431                168999999


Q ss_pred             CC-CCHHHHHHHHHHHHHHHHHHhh
Q 013008          425 LI-ISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       425 ~~-~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      .. +|+++|++++++|++++++++.
T Consensus       420 ~~~~t~e~i~~~~~~l~~~l~~~~~  444 (467)
T 2oqx_A          420 RATYTQTHMDFIIEAFKHVKENAAN  444 (467)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhhh
Confidence            88 9999999999999999987653

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.92  E-value=2.3e-23  Score=203.85  Aligned_cols=317  Identities=18%  Similarity=0.185  Sum_probs=207.5

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK  177 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~  177 (451)
                      +++|||.++...    ..+|++++++.+....   ...+++.+...+|+++++++++.+.+++++||++|+..+++++. 
T Consensus         3 ~~~i~~~~~~~~----~p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~-   74 (347)
T 1jg8_A            3 HMMIDLRSDTVT----KPTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT-   74 (347)
T ss_dssp             --CEECSCGGGC----CCCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-
T ss_pred             ceEEEeccccCC----CCCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhc-
Confidence            467898887652    2678888888654321   11223455678999999999998899999999999999987654 


Q ss_pred             HhhhcCCCCCCCCceEEEEcCCccCChh-h-hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEEE
Q 013008          178 FQRHSNPDSKEPATEFVSFTNSFHGRTM-G-ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAV  250 (451)
Q Consensus       178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aav  250 (451)
                                .++|+|++.+|+|..... . .....+.....   . ...+..    -|+++|++++++     .++++|
T Consensus        75 ----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~---v-~~~~~~----~d~~~l~~~i~~~~~~~~~~~~v  136 (347)
T 1jg8_A           75 ----------QRGDEVILEADSHIFWYEVGAMAVLSGVMPHP---V-PGKNGA----MDPDDVRKAIRPRNIHFPRTSLI  136 (347)
T ss_dssp             ----------CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEE---E-CEETTE----ECHHHHHHHSCCSCTTSCCEEEE
T ss_pred             ----------CCCCEEEEcCcchhhhccccchhhccCeEEEE---e-cCCCCc----cCHHHHHHHhccccccccCceEE
Confidence                      168999999998754221 1 11112211100   0 000000    189999999974     258889


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC---cccccccccccCCCcc--eeeecccccCCcccc-
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG---RTGYLWAHEHYGIFPD--IMTLAKPLAGGLPIG-  324 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g---r~G~~~~~~~~~~~pd--i~t~sK~lg~G~~iG-  324 (451)
                      +++++++++|+.+.+.+++++|.++|++||+++|+||+|. ++   ..+.  .........|  ++++||++++  ++| 
T Consensus       137 ~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~--~~~~~~~~~d~~~~s~sK~l~~--~~G~  211 (347)
T 1jg8_A          137 AIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGV--PVKEYAGYADSVMFCLSKGLCA--PVGS  211 (347)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCC--CHHHHHHTCSEEEEESSSTTCC--SSCE
T ss_pred             EEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCC--ChHHhcccccEEEEecccccCC--CceE
Confidence            9988887773356788999999999999999999999874 21   1121  1111111223  3468999975  467 


Q ss_pred             cccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcCh--HHHHH------HHhCCCC-cceecccceeEEEEec
Q 013008          325 AALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNP--AFLAS------KLARNPH-VKDVRGLGLIIGIEFD  393 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~------~~~~~~~-~~~v~g~G~~~~~~~~  393 (451)
                      ++++++++++.+...  ..++++..+++.++++.++|+...+.  ...++      .+++++. +......|.++++.+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  291 (347)
T 1jg8_A          212 VVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTD  291 (347)
T ss_dssp             EEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECT
T ss_pred             EEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCCCcceEEEEEcc
Confidence            456788887765321  12334445667777777788754221  11111      2222221 1112345777888774


Q ss_pred             ---CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          394 ---VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       394 ---~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                         .+..++.+.|.++||.+.+.+. +.+|++++..+++|++++++++|+++++++
T Consensus       292 ~~~~~~~~~~~~l~~~gi~v~~~~~-~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~  346 (347)
T 1jg8_A          292 NLKVNAHGFIEALRNSGVLANAVSD-TEIRLVTHKDVSRNDIEEALNIFEKLFRKF  346 (347)
T ss_dssp             TSSSCHHHHHHHHHHHTEECEEEET-TEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHCCCEEecCCC-CeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence               3477899999999999998765 789999988899999999999999988753

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.92  E-value=1.4e-24  Score=221.49  Aligned_cols=324  Identities=16%  Similarity=0.140  Sum_probs=215.3

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc----cCC---CCCHHHHHHHHHHhhccC--CCeEEecCCHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----SNM---YYSIPQIELAKRLVACSF--ADRVFFSNTGTE  166 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~---~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~e  166 (451)
                      ++..|+|..      .+|+.++.+.+++.++++.+...    ...   .......+++++++++++  .++|++++|+++
T Consensus        66 ~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~  139 (465)
T 3e9k_A           66 ENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTV  139 (465)
T ss_dssp             CBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHH
T ss_pred             CCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHH
Confidence            345677633      37777888888888877653211    111   111235678888888887  569999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCCcC--CCCcCCCCCeeEeeCCCHHHHHHh
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYR--SPFEPVMPGVNFVEYGNIEATRKL  241 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~  241 (451)
                      ++..+++.+....        +++++||+.+++||+.......   ..|.....  ....+...+..    -|+++|+++
T Consensus       140 al~~~~~~~~~~~--------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~----~d~~~l~~~  207 (465)
T 3e9k_A          140 NLHLLMLSFFKPT--------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEET----LRIEDILEV  207 (465)
T ss_dssp             HHHHHHHHHCCCC--------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSS----CCHHHHHHH
T ss_pred             HHHHHHHHhcccc--------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCc----cCHHHHHHH
Confidence            9999998664211        2467799999999985543221   12211100  00001111111    179999999


Q ss_pred             cC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccc
Q 013008          242 IQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPL  317 (451)
Q Consensus       242 l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~l  317 (451)
                      ++  .+++++|+++++++++|.+.+    +++|.++|++||+++|+|++|+ .|...  .....++  .|++  +++|.+
T Consensus       208 i~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~--~~~~~~~--~D~~~~s~~K~l  278 (465)
T 3e9k_A          208 IEKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE--LYLHDWG--VDFACWCSYKYL  278 (465)
T ss_dssp             HHHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CCEEEECSSSTT
T ss_pred             HHhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--CchhhcC--CCEEEECccccc
Confidence            96  247899999999999998877    8999999999999999999996 33221  1222333  5555  566999


Q ss_pred             cCC-cccccccccHHHHhhccCCCcc---C------------C----------CCCcHHHHHHHHHHHHHhcC---hHHH
Q 013008          318 AGG-LPIGAALVTEKVASAINYGDHG---S------------T----------FAGSPLVCNAAIAVLDKISN---PAFL  368 (451)
Q Consensus       318 g~G-~~iG~v~~~~~i~~~~~~~~~~---~------------t----------~~~~~~~~aaa~aal~~~~~---~~~~  368 (451)
                      ++| .++|++++++++.+.+.+...+   +            +          -+.+++++++..++++.+.+   +.+.
T Consensus       279 ~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~  358 (465)
T 3e9k_A          279 NAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALR  358 (465)
T ss_dssp             CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHH
Confidence            644 5789999999887766532111   1            0          14567788888888877643   2222


Q ss_pred             HH----------HHhCC----------CCcceec-----ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeC
Q 013008          369 AS----------KLARN----------PHVKDVR-----GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP  423 (451)
Q Consensus       369 ~~----------~~~~~----------~~~~~v~-----g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~  423 (451)
                      ++          .++.+          +.+..+.     ..|.++++.+.....++.+.|.++||.+..... +.+|+++
T Consensus       359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~-~~iRis~  437 (465)
T 3e9k_A          359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELEKRGVVCDKRNP-NGIRVAP  437 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHHHHHTTTEECEEETT-TEEEEBC
T ss_pred             HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHHHHHHCCEEEecCCC-CEEEEeC
Confidence            22          22221          3332222     248888888864566799999999999886554 8899998


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          424 -PLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       424 -~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                       ++.+|++|+++++++|++++++..
T Consensus       438 ~~~~~t~edi~~~~~~l~~~l~~~~  462 (465)
T 3e9k_A          438 VPLYNSFHDVYKFTNLLTSILDSAE  462 (465)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred             cccCCCHHHHHHHHHHHHHHHHhcc
Confidence             899999999999999999987644

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.92  E-value=2.3e-23  Score=208.68  Aligned_cols=279  Identities=14%  Similarity=0.097  Sum_probs=193.4

Q ss_pred             CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008          136 MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH  215 (451)
Q Consensus       136 ~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~  215 (451)
                      ....+...+|+++++++++.+.+++++||++|+..+++.+.           .++++|++.+|.|++.........    
T Consensus        58 ~~~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~-----------~~gd~Vl~~~~~y~~~~~~~~~~~----  122 (404)
T 1e5e_A           58 RLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTIL-----------KAGDHLISDECLYGCTHALFEHAL----  122 (404)
T ss_dssp             TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTHH----
T ss_pred             CCcChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHh-----------CCCCEEEEeCCCchhHHHHHHHHH----
Confidence            34456678999999999998899999999999999998653           168899999999987643110000    


Q ss_pred             cCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH-hCCEEEEeccccCCCc
Q 013008          216 YRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AGALLVFDEVQCGLGR  294 (451)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~tg~gr  294 (451)
                           ......+..++.+|+++|++.+++ ++++|+++++++++|.+.+    +++|.++|++ ||+++|+||+|+.+..
T Consensus       123 -----~~~g~~~~~v~~~d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~  192 (404)
T 1e5e_A          123 -----TKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI  192 (404)
T ss_dssp             -----HHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT
T ss_pred             -----HHcCCEEEEECCCCHHHHHHhcCC-CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh
Confidence                 011133556677799999999975 6888999988888887765    9999999999 9999999999987633


Q ss_pred             ccccccccccCCCcceeeecccccC-Cccc-ccccccHHHHh-hccCCCccC-CCCCcHHHHHHHHHHHHHhcC--hHHH
Q 013008          295 TGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGS-TFAGSPLVCNAAIAVLDKISN--PAFL  368 (451)
Q Consensus       295 ~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~--~~~~  368 (451)
                      . ..  . .++....+.++||++++ |+++ |++++++++++ .+....... +.+.+++.++++.++++.+..  +...
T Consensus       193 ~-~~--~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~  268 (404)
T 1e5e_A          193 T-NP--V-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAES  268 (404)
T ss_dssp             C-CG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             C-Cc--c-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHHHHHHHHH
Confidence            2 22  1 23433334478999985 7897 99999998887 776544333 456789999988888864310  0111


Q ss_pred             H------HHHhCCCCc--------------ce----ecccceeEEEEecCChHHHHHHHHHCCceeeec--C--------
Q 013008          369 A------SKLARNPHV--------------KD----VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--G--------  414 (451)
Q Consensus       369 ~------~~~~~~~~~--------------~~----v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--~--------  414 (451)
                      +      +.+++.+.+              ..    .++.|.++.|++........+.+.+.||++...  |        
T Consensus       269 ~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~  348 (404)
T 1e5e_A          269 ENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQH  348 (404)
T ss_dssp             HHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEEC
T ss_pred             HHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCCCceeccCCCCcceeeec
Confidence            1      133333311              11    134488888887532234555555678854321  1        


Q ss_pred             ----------------C---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          415 ----------------K---GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       415 ----------------~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                                      .   .+.+|+++..    |++++++++|+++++.+.
T Consensus       349 ~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~  396 (404)
T 1e5e_A          349 PASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALL  396 (404)
T ss_dssp             GGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHH
Confidence                            0   2689998776    889999999999988754

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.92  E-value=9.9e-24  Score=210.91  Aligned_cols=309  Identities=15%  Similarity=0.091  Sum_probs=210.0

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK  177 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~  177 (451)
                      ++||||.++...  ++   |++.+++.++++...    +.......+++++++++++.+.+++++||++|+..+++++. 
T Consensus        30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~----y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~-   99 (399)
T 2oga_A           30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR----YLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLG-   99 (399)
T ss_dssp             BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC----CSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTT-
T ss_pred             CcccccCcCCCC--CC---HHHHHHHHHHHhcCC----CCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhC-
Confidence            678999887763  32   899999999887632    12345688999999999998789999999999999998762 


Q ss_pred             HhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccC
Q 013008          178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG  257 (451)
Q Consensus       178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~  257 (451)
                       .        .++++|++.+++||+..... ...+.....   .+..++.   ...|+++|++++++ ++++|+++   +
T Consensus       100 -~--------~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~---~~~~~~~---~~~d~~~l~~~i~~-~~~~v~~~---n  159 (399)
T 2oga_A          100 -I--------GPGDEVIVPSHTYIASWLAV-SATGATPVP---VEPHEDH---PTLDPLLVEKAITP-RTRALLPV---H  159 (399)
T ss_dssp             -C--------CTTCEEEEESSSCTHHHHHH-HHTTCEEEE---ECBCSSS---SSBCHHHHHHHCCT-TEEEECCB---C
T ss_pred             -C--------CCcCEEEECCCccHHHHHHH-HHCCCEEEE---EecCCCC---CCcCHHHHHHhcCC-CCeEEEEe---C
Confidence             1        15789999999999865433 322221111   1111100   01289999999975 57777753   3


Q ss_pred             CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC-cccccccccccCCCcceeee----cccccC-Cccccccccc-H
Q 013008          258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-RTGYLWAHEHYGIFPDIMTL----AKPLAG-GLPIGAALVT-E  330 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g-r~G~~~~~~~~~~~pdi~t~----sK~lg~-G~~iG~v~~~-~  330 (451)
                      ++|.+.+    +++|.++|++||+++|+||+|+.+. ..+.     .++..+|++++    ||.+++ | ++|+++++ +
T Consensus       160 ~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~  229 (399)
T 2oga_A          160 LYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDP  229 (399)
T ss_dssp             GGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCH
T ss_pred             CcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccccCEEEEeCCCCccCCcCC-ceEEEEeCCH
Confidence            3565555    9999999999999999999996331 1222     12333688876    499987 8 89999886 7


Q ss_pred             HHHhhccCCC-c-----------cCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCccee--cccce
Q 013008          331 KVASAINYGD-H-----------GSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDV--RGLGL  386 (451)
Q Consensus       331 ~i~~~~~~~~-~-----------~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v--~g~G~  386 (451)
                      ++++.+.... .           +.++..+++.++++.++++.++.  +.++          .++.++.+...  ...+.
T Consensus       230 ~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~  307 (399)
T 2oga_A          230 ELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDS--WNGRRSALAAEYLSGLAGLPGIGLPVTAPDTD  307 (399)
T ss_dssp             HHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEE
T ss_pred             HHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCCCccccCCCCCCc
Confidence            8877654211 1           23345689999998888875532  1111          23334332211  11222


Q ss_pred             eE--EEEec-CChHHHHHHHHHCCceeeecCC--------------------------CCEEEEeCCCCCCHHHHHHHHH
Q 013008          387 II--GIEFD-VSATPVVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       387 ~~--~~~~~-~~~~~~~~~l~~~Gv~~~~~~~--------------------------~~~iri~~~~~~t~e~i~~~l~  437 (451)
                      .+  .+.+. .+..++.+.|.++||.+.+...                          .+.+|++++..+|+||++++++
T Consensus       308 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~  387 (399)
T 2oga_A          308 PVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVID  387 (399)
T ss_dssp             CCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHH
T ss_pred             ceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHH
Confidence            22  23332 4577899999999999876421                          1469999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 013008          438 ILCKTLPVLDS  448 (451)
Q Consensus       438 ~l~~~l~~~~~  448 (451)
                      +|+++++++++
T Consensus       388 ~l~~~~~~l~~  398 (399)
T 2oga_A          388 AVREWAERVDQ  398 (399)
T ss_dssp             HHHHHHHSCC-
T ss_pred             HHHHHHHHhcc
Confidence            99999887653

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.92  E-value=1.3e-23  Score=213.70  Aligned_cols=326  Identities=14%  Similarity=0.108  Sum_probs=204.6

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a  175 (451)
                      .|+.|+||.++.++..   -.+++.+++.    ....  .+.......+|+++|+++++.+++++++||++|++.+++++
T Consensus        40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~--~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l  110 (456)
T 2ez2_A           40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDE--AYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLA  110 (456)
T ss_dssp             GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHH
T ss_pred             cccceeeeccccCCcc---CCHHHHHHhh----cchh--hcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh
Confidence            4678999988766432   2466666654    2111  22345568899999999999889999999999999999876


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CCCeeEee--CC-CHHHHHHhcCCC---CeE
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVE--YG-NIEATRKLIQPG---KTA  248 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-d~~~le~~l~~~---~~a  248 (451)
                      .   +        ++|  |+.+++||+.+...+...|......+..+. .+.. ..+  ++ |+++|++++++.   .++
T Consensus       111 ~---~--------~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~-~~~~~~~~d~~~l~~~i~~~t~~~~~  176 (456)
T 2ez2_A          111 I---K--------PGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGL-NIAFKGDIDLKKLQKLIDEKGAENIA  176 (456)
T ss_dssp             C---C--------TTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTC-CCSCTTCBCHHHHHHHHHHHCGGGEE
T ss_pred             C---C--------CCC--EeccccccchhHHHHHHcCCEEEEecccccccccc-cccccCCCCHHHHHHHHHhcccccee
Confidence            4   1        466  888999988766555554432211111100 0000 011  12 899999998632   357


Q ss_pred             EEEEc-cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC----------CCccccccc--ccccCCCcceeeec-
Q 013008          249 AVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----------LGRTGYLWA--HEHYGIFPDIMTLA-  314 (451)
Q Consensus       249 avi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----------~gr~G~~~~--~~~~~~~pdi~t~s-  314 (451)
                      +|+++ |+|+++| .+++.+++++|+++|++||++||+||+|+.          +.+.|....  .+..+..+|++++| 
T Consensus       177 ~v~l~~p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~  255 (456)
T 2ez2_A          177 YICLAVTVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSG  255 (456)
T ss_dssp             EEEEESSBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEET
T ss_pred             EEEEeccCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeC
Confidence            88888 5554677 467999999999999999999999999974          345554211  01123347888774 


Q ss_pred             ccccC-Ccccccccc-cHHHHhhccCCC---c-cCCCC-CcHHHHHH-HHHHHHHhcChHHHHH-------H---HhCCC
Q 013008          315 KPLAG-GLPIGAALV-TEKVASAINYGD---H-GSTFA-GSPLVCNA-AIAVLDKISNPAFLAS-------K---LARNP  376 (451)
Q Consensus       315 K~lg~-G~~iG~v~~-~~~i~~~~~~~~---~-~~t~~-~~~~~~aa-a~aal~~~~~~~~~~~-------~---~~~~~  376 (451)
                      |.+++ | ++|++++ ++++++.+....   + ..++. .++..+++ +.+.++.++ +++.++       +   +++. 
T Consensus       256 kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-  332 (456)
T 2ez2_A          256 KKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA-  332 (456)
T ss_dssp             TTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred             cccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC-
Confidence            55543 4 5788888 688877654211   1 11222 24334344 555555543 333333       1   1221 


Q ss_pred             Cccee-cccceeEEEEec-----CChHHH-----HHHH-HHCCceeeecCC----------------CCEEEEeCCCC-C
Q 013008          377 HVKDV-RGLGLIIGIEFD-----VSATPV-----VDAC-RDSGLLVLTAGK----------------GNVVRLVPPLI-I  427 (451)
Q Consensus       377 ~~~~v-~g~G~~~~~~~~-----~~~~~~-----~~~l-~~~Gv~~~~~~~----------------~~~iri~~~~~-~  427 (451)
                      .+..+ ...|.++++.+.     .+..++     ++.| .++||.+.+.+.                .+.+|++++.. +
T Consensus       333 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~  412 (456)
T 2ez2_A          333 GVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVY  412 (456)
T ss_dssp             TCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTC
T ss_pred             CCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCC
Confidence            12112 234677777652     123344     7777 578998654221                26799999886 8


Q ss_pred             CHHHHHHHHHHHHHHHHHHhh
Q 013008          428 SEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       428 t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +++++++++++|++++++...
T Consensus       413 t~e~i~~~~~~l~~~l~~~~~  433 (456)
T 2ez2_A          413 TYAHMDVVADGIIKLYQHKED  433 (456)
T ss_dssp             CHHHHHHHHHHHHHHHHTGGG
T ss_pred             CHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999987653

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.92  E-value=5.5e-24  Score=211.84  Aligned_cols=317  Identities=12%  Similarity=0.065  Sum_probs=206.1

Q ss_pred             cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CC-eEEecCCHHHHHHHH
Q 013008           95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAA  171 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e-~v~~~~sG~eA~~~a  171 (451)
                      .+|+.|.|..+.     + ..+|++.+++.+++..  + ..........+++++++++++  .+ ++++++||++|+..+
T Consensus        16 ~~~~~~~~~~g~-----~-~~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   86 (393)
T 2huf_A           16 VTPNKLLMGPGP-----S-NAPQRVLDAMSRPILG--H-LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT   86 (393)
T ss_dssp             CCCCCEECSSSC-----C-CCCHHHHHHTTSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred             CCCCeEEecCCC-----C-CCCHHHHHHHHhhhcc--C-CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence            356777664442     2 2689999988776543  1 111122347889999999887  33 799999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      ++++.           .++++|++.+++||+...... ...|....   +.+...+.    ..|+++|++.+++.++++|
T Consensus        87 ~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~l~~~i~~~~~~~v  148 (393)
T 2huf_A           87 LCNLL-----------EDGDVILIGHTGHWGDRSADMATRYGADVR---VVKSKVGQ----SLSLDEIRDALLIHKPSVL  148 (393)
T ss_dssp             HHHHC-----------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE---EEECCTTC----CCCHHHHHHHHHHHCCSEE
T ss_pred             HHHHh-----------CCCCEEEEECCCcchHHHHHHHHHcCCeeE---EEeCCCCC----CCCHHHHHHHHhccCCcEE
Confidence            99764           158899999999998431111 11111110   01111110    1389999999864246777


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALV  328 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~  328 (451)
                      +++++++++|.+.+    +++|.++|++||+++|+||+++ +|..  ......  ..+|+++  ++|+++++.++|++++
T Consensus       149 ~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~~G~G~~~~  219 (393)
T 2huf_A          149 FLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAPPGITPVSF  219 (393)
T ss_dssp             EEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCCSSCEEEEE
T ss_pred             EEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccCCCeEEEEE
Confidence            88888888887766    8999999999999999999985 5432  111222  2467765  5699875445599999


Q ss_pred             cHHHHhhccCCC----------------------ccCCC-CCcHHHHHHHHHHHHHhcCh---HHHHH----------HH
Q 013008          329 TEKVASAINYGD----------------------HGSTF-AGSPLVCNAAIAVLDKISNP---AFLAS----------KL  372 (451)
Q Consensus       329 ~~~i~~~~~~~~----------------------~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~----------~~  372 (451)
                      ++++++.+....                      ...++ +.+..+++++.++++.+.+.   ...++          .+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  299 (393)
T 2huf_A          220 SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGL  299 (393)
T ss_dssp             CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            999888765320                      01122 34566666666777765321   12221          12


Q ss_pred             hCCCCcceecc----cceeEEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHH
Q 013008          373 ARNPHVKDVRG----LGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCK  441 (451)
Q Consensus       373 ~~~~~~~~v~g----~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~-~~~~t~e~i~~~l~~l~~  441 (451)
                      +++. +..+..    .+.++++.+.  .+..++.+.|+++ ||.+.++.   ..+.+|+++ ++..++|++++++++|++
T Consensus       300 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~  378 (393)
T 2huf_A          300 QDAG-FELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQE  378 (393)
T ss_dssp             HHTT-CCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred             HHcC-CeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHH
Confidence            2222 211211    2446777763  3577899999875 99998753   237899998 656789999999999999


Q ss_pred             HHHHHhh
Q 013008          442 TLPVLDS  448 (451)
Q Consensus       442 ~l~~~~~  448 (451)
                      ++++++.
T Consensus       379 ~~~~~~~  385 (393)
T 2huf_A          379 AVAAVKP  385 (393)
T ss_dssp             HHHHHCC
T ss_pred             HHHHcCC
Confidence            9988754

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.92  E-value=6.8e-23  Score=205.83  Aligned_cols=296  Identities=22%  Similarity=0.159  Sum_probs=201.3

Q ss_pred             cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       111 ~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      .+++.+|+..+++..  ....+.+.....+...+++++++++++.+.+++++||++|+..+++.+.           .++
T Consensus        29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~-----------~~g   95 (412)
T 2cb1_A           29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALL-----------RPG   95 (412)
T ss_dssp             BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTT
T ss_pred             eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCC
Confidence            466777765555443  2333434444567789999999999998899999999999999999653           158


Q ss_pred             ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008          191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      ++|++.++.|++.........         ......+.+++. |+++|++++++ ++++|+++++++++|.+.+    ++
T Consensus        96 d~vi~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~-~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~----l~  160 (412)
T 2cb1_A           96 DEVVAAKGLFGQTIGLFGQVL---------SLMGVTVRYVDP-EPEAVREALSA-KTRAVFVETVANPALLVPD----LE  160 (412)
T ss_dssp             CEEEEETTCCHHHHHHHHHTT---------TTTTCEEEEECS-SHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HH
T ss_pred             CEEEEeCCCchhHHHHHHHHH---------HHcCCEEEEECC-CHHHHHHHhcc-CCeEEEEeCCCCCCccccc----HH
Confidence            899999999976443221100         011123445554 59999999975 6889999999888888776    99


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccC-CcccccccccH-----------------
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAG-GLPIGAALVTE-----------------  330 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~-G~~iG~v~~~~-----------------  330 (451)
                      +|+++|++||+++|+||+|++++....     ..+..+|+++  ++|.+++ |.++|++++.+                 
T Consensus       161 ~i~~l~~~~~~~li~D~~~~~~~~~~~-----~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
T 2cb1_A          161 ALATLAEEAGVALVVDNTFGAAGALCR-----PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLK  235 (412)
T ss_dssp             HHHHHHHHHTCEEEEECGGGTTTTSCC-----GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC---
T ss_pred             HHHHHHHHcCCEEEEECCCccccccCC-----ccccCCeEEEECCcccccCCCCcEEEEEEecccccccccccccccccc
Confidence            999999999999999999986532221     1123467765  8899975 68888877543                 


Q ss_pred             -----------HHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcCh--------HHHHHHHhCCCCccee---------
Q 013008          331 -----------KVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNP--------AFLASKLARNPHVKDV---------  381 (451)
Q Consensus       331 -----------~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~--------~~~~~~~~~~~~~~~v---------  381 (451)
                                 ++.+.++... ....+..+|..++.+...++.+...        ..+.+.+..++.+..+         
T Consensus       236 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p  315 (412)
T 2cb1_A          236 GQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDP  315 (412)
T ss_dssp             ----HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCT
T ss_pred             ccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc
Confidence                       3333333211 1122355788887777766544210        1111134445544433         


Q ss_pred             ---------cccceeEEEEecCChHHHHHHHHHCCceeeecC-----------------------------CCCEEEEeC
Q 013008          382 ---------RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG-----------------------------KGNVVRLVP  423 (451)
Q Consensus       382 ---------~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------------~~~~iri~~  423 (451)
                               ++.|.++.|.+ .+...+.+.|.+.|+++ .+.                             ..+.+|+++
T Consensus       316 ~~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~  393 (412)
T 2cb1_A          316 AHRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSV  393 (412)
T ss_dssp             THHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEEC
T ss_pred             cHHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEe
Confidence                     35677888888 45666777777889886 331                             036899999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 013008          424 PLIISEQELDQAVEILCK  441 (451)
Q Consensus       424 ~~~~t~e~i~~~l~~l~~  441 (451)
                      ....++++|+.++++|++
T Consensus       394 g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          394 GLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             CSSCHHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHHhh
Confidence            999999999998888864

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.92  E-value=5.5e-23  Score=205.55  Aligned_cols=279  Identities=15%  Similarity=0.083  Sum_probs=194.3

Q ss_pred             CCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       135 ~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      ..+.++...+++++++++++.+.+++++||++|+..+++.+.           .++++|++.++.||+.......+..  
T Consensus        60 ~r~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~--  126 (398)
T 1gc0_A           60 SRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLL-----------RPGDEVLLGNTLYGCTFAFLHHGIG--  126 (398)
T ss_dssp             ---CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSCCSHHHHHHHHTGG--
T ss_pred             cCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------cCCCEEEEeCCCchhHHHHHHHHHH--
Confidence            445677789999999999997788999999999999999764           1578999999999886543321110  


Q ss_pred             CcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008          215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR  294 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  294 (451)
                             .....+.+++.+|+++|++.+++ ++++|+++++++++|.+.+    +++|+++|++||+++|+||+|+.+ .
T Consensus       127 -------~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~  193 (398)
T 1gc0_A          127 -------EFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-Y  193 (398)
T ss_dssp             -------GGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-H
T ss_pred             -------HcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-c
Confidence                   01123456677799999999975 7899999999888888776    999999999999999999999743 2


Q ss_pred             ccccccccccCCCcceeeecccccC-Cccc-ccccccHHHHh-hccCCCcc-CCCCCcHHHHHHHHHHHHHhcC--hHHH
Q 013008          295 TGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHG-STFAGSPLVCNAAIAVLDKISN--PAFL  368 (451)
Q Consensus       295 ~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~--~~~~  368 (451)
                      .+..   ..++..+.+.+++|.+++ |.|+ |++++++++++ .+...... .+.+.+|+.++++.++++.+..  +...
T Consensus       194 ~~~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  270 (398)
T 1gc0_A          194 LQRP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHC  270 (398)
T ss_dssp             HCCG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cCCc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchHHHHHHHHH
Confidence            2221   123544555588999985 6787 88889887665 45433333 3456789998888888764311  1111


Q ss_pred             HH------HHhCCCCccee------------------cccceeEEEEecCChHHHHHHHHHCCceeee---cC-------
Q 013008          369 AS------KLARNPHVKDV------------------RGLGLIIGIEFDVSATPVVDACRDSGLLVLT---AG-------  414 (451)
Q Consensus       369 ~~------~~~~~~~~~~v------------------~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~~-------  414 (451)
                      ++      .+++++.+..+                  ++.|.++.+.+........+.+.+.|+....   ++       
T Consensus       271 ~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~  350 (398)
T 1gc0_A          271 ANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQH  350 (398)
T ss_dssp             HHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEEC
T ss_pred             HHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCCCcceeeec
Confidence            11      33444432211                  2468888888853334455666677776543   10       


Q ss_pred             -------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          415 -------------------KGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       415 -------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                                         ..+.+|++++...++++|+.+.++|+++
T Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          351 PASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             GGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence                               0268999999999999998888888754

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.91  E-value=6.8e-24  Score=211.67  Aligned_cols=317  Identities=14%  Similarity=0.112  Sum_probs=186.9

Q ss_pred             EEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc------CCCCCHHHHHHHHHHhhccC--CCeEEecCC
Q 013008           92 LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS------NMYYSIPQIELAKRLVACSF--ADRVFFSNT  163 (451)
Q Consensus        92 l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~~~~--~e~v~~~~s  163 (451)
                      .++.++.-|+|+.++.      ..+|++++++.+++.+.....      .....+...+++++++++++  .+++++++|
T Consensus        15 ~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g   88 (400)
T 3vax_A           15 VPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG   88 (400)
T ss_dssp             -------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred             CcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence            3455677889977643      478999999999987531110      01112336789999999987  468999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCc-eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHH
Q 013008          164 GTEANEAAIKFARKFQRHSNPDSKEPAT-EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEA  237 (451)
Q Consensus       164 G~eA~~~al~~a~~~~~~~~~~~~~~~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~  237 (451)
                      |++|+..+++++..++..       ++| .||+.++.|++.......+.. .         ...+..++.+     |+++
T Consensus        89 ~t~al~~~~~~l~~~~~~-------~gd~~Vl~~~~~~~~~~~~~~~~~~-~---------g~~~~~v~~~~~~~~d~~~  151 (400)
T 3vax_A           89 ATESNNIALLGLAPYGER-------TGRRHIITSAIEHKAVLEPLEHLAG-R---------GFEVDFLTPGPSGRISVEG  151 (400)
T ss_dssp             HHHHHHHHHHTTHHHHHH-------HTCCEEEEETTSCHHHHHHHHHHHT-T---------TCEEEEECCCTTCCCCHHH
T ss_pred             HHHHHHHHHHHHHHhhcc-------CCCCEEEECccccHhHHHHHHHHHh-c---------CCeEEEEccCCCCCcCHHH
Confidence            999999999987533210       478 899998888765443332210 0         0112223322     8999


Q ss_pred             HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cc
Q 013008          238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AK  315 (451)
Q Consensus       238 le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK  315 (451)
                      |++++++ ++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ ++...    ....+. +|++++  +|
T Consensus       152 l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K  220 (400)
T 3vax_A          152 VMERLRP-DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK  220 (400)
T ss_dssp             HHTTCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG
T ss_pred             HHHhcCC-CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH
Confidence            9999975 6889999999888898776    8999999999999999999996 33221    122233 787755  59


Q ss_pred             cccCCccccccc-ccH-HHH---hhccCCC-------ccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------H
Q 013008          316 PLAGGLPIGAAL-VTE-KVA---SAINYGD-------HGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------K  371 (451)
Q Consensus       316 ~lg~G~~iG~v~-~~~-~i~---~~~~~~~-------~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~  371 (451)
                      .+| +.++|+++ +++ ++.   ..+.+..       .....+.++.+++++.++++.+.+  +++.++          .
T Consensus       221 ~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~  299 (400)
T 3vax_A          221 IGA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAG  299 (400)
T ss_dssp             GTS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             hCC-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            443 34577777 665 222   1222211       112334577777777777776532  222222          2


Q ss_pred             HhCCCCcceeccc----ceeEEEEec-CChHHHHHHHHHCCceeeecC-----------------C-----CCEEEEeC-
Q 013008          372 LARNPHVKDVRGL----GLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------------K-----GNVVRLVP-  423 (451)
Q Consensus       372 ~~~~~~~~~v~g~----G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------------~-----~~~iri~~-  423 (451)
                      ++ .+.+......    +.++.+.+. .+..++.+.|. +||.+.++.                 .     .+.+|+++ 
T Consensus       300 L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~  377 (400)
T 3vax_A          300 LA-STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWT  377 (400)
T ss_dssp             HT-TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEE
T ss_pred             hC-CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEcc
Confidence            22 4433322222    346666663 46778999999 999887642                 0     27899999 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q 013008          424 PLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       424 ~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +..+++|++++++++|++++++
T Consensus       378 ~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          378 PGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             EC--------------------
T ss_pred             CCCCCHHHHHHHHHHHHHHhcc
Confidence            8889999999999999988754

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.91  E-value=1.1e-23  Score=206.16  Aligned_cols=293  Identities=17%  Similarity=0.144  Sum_probs=200.6

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA  190 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~  190 (451)
                      .+|+|++++.+++..  +. .........+++++++++++.    +++++++||++|+..+++.+.            + 
T Consensus        11 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~------------~-   74 (353)
T 2yrr_A           11 IPERVQKALLRPMRG--HL-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD------------R-   74 (353)
T ss_dssp             CCHHHHGGGGSCCCC--TT-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS------------C-
T ss_pred             CCHHHHHHHhccccc--cc-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc------------C-
Confidence            679999988876643  11 001123378899999998873    579999999999999998665            3 


Q ss_pred             ceEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCcccc
Q 013008          191 TEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA  264 (451)
Q Consensus       191 ~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~  264 (451)
                      ++|++.++.||+... ......|.            .+..++.     .|+++|++.+++.++++|+++++++++|.+.+
T Consensus        75 d~vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  142 (353)
T 2yrr_A           75 GPVLVLVNGAFSQRVAEMAALHGL------------DPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP  142 (353)
T ss_dssp             CCEEEEECSHHHHHHHHHHHHTTC------------CEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred             CcEEEEcCCCchHHHHHHHHHcCC------------ceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC
Confidence            789999999998521 11111121            1222221     38999999986435678888888888887766


Q ss_pred             CHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhccC--C-
Q 013008          265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY--G-  339 (451)
Q Consensus       265 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~--~-  339 (451)
                          +++|.++|++||+++|+||+| ++|...  .....++  +|+++  ++|.++++.++|++++++++++.+..  . 
T Consensus       143 ----~~~i~~l~~~~~~~li~D~a~-~~~~~~--~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~  213 (353)
T 2yrr_A          143 ----AEAIGALAKEAGALFFLDAVT-TLGMLP--FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGW  213 (353)
T ss_dssp             ----HHHHHHHHHHHTCEEEEECTT-TTTTSC--CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCS
T ss_pred             ----HHHHHHHHHHcCCeEEEEcCc-cccccc--ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCCCc
Confidence                899999999999999999999 465432  2222333  57665  46988765568999999998887751  0 


Q ss_pred             ------------CccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceecc---cceeEEEE
Q 013008          340 ------------DHGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVRG---LGLIIGIE  391 (451)
Q Consensus       340 ------------~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~g---~G~~~~~~  391 (451)
                                  .....++.++.+++++.++++.+.+.   +..++          .+++. .+..+..   .+.++++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~  292 (353)
T 2yrr_A          214 YLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVR  292 (353)
T ss_dssp             TTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEE
T ss_pred             cccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEE
Confidence                        11223355777777777888765332   12222          12223 2222222   45666777


Q ss_pred             ec--CChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHH-HHHHHHHHHHHH
Q 013008          392 FD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELD-QAVEILCKTLPV  445 (451)
Q Consensus       392 ~~--~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~-~~l~~l~~~l~~  445 (451)
                      +.  .+..++.+.|.++||.+.++.   .++.+|++++...++++++ +++++|++++++
T Consensus       293 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          293 PPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             CCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            73  357889999999999998764   2367999987778999999 999999998764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.91  E-value=8.2e-23  Score=203.68  Aligned_cols=296  Identities=13%  Similarity=0.101  Sum_probs=197.9

Q ss_pred             CCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          112 LGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       112 lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      +.+.+++...++... ....+.+..+.++...+|+++++++++.+.+++++||++|+..+++.+.           .+++
T Consensus        32 ~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~-----------~~gd   99 (389)
T 3acz_A           32 FCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFL-----------QKGD   99 (389)
T ss_dssp             BCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTC-----------CTTC
T ss_pred             eecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-----------CCCC
Confidence            455665444333221 1223444556677789999999999997788899999999999998653           1588


Q ss_pred             eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHH
Q 013008          192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF  271 (451)
Q Consensus       192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~  271 (451)
                      +||+.++.||+.........         ......+.+++..|++++++++++ ++++|++|++++++|.+.+    +++
T Consensus       100 ~vl~~~~~y~~~~~~~~~~~---------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~  165 (389)
T 3acz_A          100 HLIAGDTLYGCTVSLFTHWL---------PRFGIEVDLIDTSDVEKVKAAWKP-NTKMVYLESPANPTCKVSD----IKG  165 (389)
T ss_dssp             EEEEESSCCHHHHHHHHHHH---------HHTTCEEEEECTTCHHHHHHTCCT-TEEEEEEESSCTTTCCCCC----HHH
T ss_pred             EEEEeCCCchHHHHHHHHHH---------HHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecC----HHH
Confidence            99999999998543321100         011133556777899999999975 6889999999998888776    999


Q ss_pred             HHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccC-Cccc-ccccccH-HHHhhccCCCccCCCC
Q 013008          272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTE-KVASAINYGDHGSTFA  346 (451)
Q Consensus       272 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~-~i~~~~~~~~~~~t~~  346 (451)
                      |+++|++||+++|+||+|+++ ..+..     .+..+|++  +++|.+++ |.++ |++++++ ++++.+.........+
T Consensus       166 i~~~~~~~~~~livD~~~~~~-~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~  239 (389)
T 3acz_A          166 IAVVCHERGARLVVDATFTSP-CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL  239 (389)
T ss_dssp             HHHHHHHHTCEEEEECTTTCT-TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCEEEEECCCccc-cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCC
Confidence            999999999999999999754 22222     12457777  68899986 5887 9999998 8888775432222334


Q ss_pred             CcHHHHHHHHHHHHHhcC--hHHHHH------HHhCCCCcce------------------ecccceeEEEEecCChHHHH
Q 013008          347 GSPLVCNAAIAVLDKISN--PAFLAS------KLARNPHVKD------------------VRGLGLIIGIEFDVSATPVV  400 (451)
Q Consensus       347 ~~~~~~aaa~aal~~~~~--~~~~~~------~~~~~~~~~~------------------v~g~G~~~~~~~~~~~~~~~  400 (451)
                      .+|+.++++++.++.+..  +...++      .+++++.+..                  .++.|.++.+.+.. ...+.
T Consensus       240 ~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-~~~~~  318 (389)
T 3acz_A          240 MAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-FEAAK  318 (389)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-HHHHH
T ss_pred             CCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-HHHHH
Confidence            678888888777764311  111111      2233221111                  13557888888854 55566


Q ss_pred             HHHHHCCceeeec--C---------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          401 DACRDSGLLVLTA--G---------------------------KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       401 ~~l~~~Gv~~~~~--~---------------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.|.+.|+++.+.  |                           ..+.+|+++...    +.++.++.|.++++
T Consensus       319 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~  387 (389)
T 3acz_A          319 KLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE  387 (389)
T ss_dssp             HHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence            6666778876552  1                           026899987765    45555666666554

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=2e-23  Score=204.37  Aligned_cols=293  Identities=16%  Similarity=0.084  Sum_probs=200.1

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE  192 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~  192 (451)
                      .+|++++|+.+++..  + ..........+++++++++++.  +.+++++||++|+..+++.+.           .++++
T Consensus        12 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~-----------~~gd~   77 (352)
T 1iug_A           12 LHPKALEALARPQLH--H-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF-----------APGER   77 (352)
T ss_dssp             CCHHHHHHHHSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-----------CTTCE
T ss_pred             CCHHHHHHhccCCCC--c-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc-----------CCCCe
Confidence            679999998876642  1 1111122367899999999873  589999999999999999764           15889


Q ss_pred             EEEEcCCccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCccccCH
Q 013008          193 FVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK  266 (451)
Q Consensus       193 ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~  266 (451)
                      |++.+++|++...... ...|..            +..++.     .|+++|++    .++++|+++.+++++|.+.+  
T Consensus        78 vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~----~~~~~v~~~~~~nptG~~~~--  139 (352)
T 1iug_A           78 VLVPVYGKFSERFYEIALEAGLV------------VERLDYPYGDTPRPEDVAK----EGYAGLLLVHSETSTGALAD--  139 (352)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCE------------EEEEECCTTCCCCTTTSCC----SSCSEEEEESEETTTTEECC--
T ss_pred             EEEEeCCchhHHHHHHHHHcCCc------------eEEEeCCCCCCCCHHHHhc----cCCcEEEEEEecCCcceecC--
Confidence            9999999998651111 111211            112221     15555554    35678888888888888766  


Q ss_pred             HHHHHHHHHHHHh--CCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhccC----
Q 013008          267 EFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY----  338 (451)
Q Consensus       267 ~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~----  338 (451)
                        +++|.++|++|  |+++|+||+|+ +|...  +....+  .+|++  +++|+++++.++|++++++++++.+.+    
T Consensus       140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~  212 (352)
T 1iug_A          140 --LPALARAFKEKNPEGLVGADMVTS-LLVGE--VALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYY  212 (352)
T ss_dssp             --HHHHHHHHHHHCTTCEEEEECTTT-BTTBC--CCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSST
T ss_pred             --HHHHHHHHHhhCCCCEEEEECCcc-ccCcc--eecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCce
Confidence              89999999999  99999999996 54321  122222  35665  456988765568999999887765211    


Q ss_pred             ----------CCccCCCCCcHHHHHHHHHHHHHhcCh--HHHHH----------HHhCCCCcceecc--cceeEEEEec-
Q 013008          339 ----------GDHGSTFAGSPLVCNAAIAVLDKISNP--AFLAS----------KLARNPHVKDVRG--LGLIIGIEFD-  393 (451)
Q Consensus       339 ----------~~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~----------~~~~~~~~~~v~g--~G~~~~~~~~-  393 (451)
                                ......++.++..++++.++++.+.+.  +..++          .++++ .+..+.+  .+.++++.+. 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~  291 (352)
T 1iug_A          213 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPE  291 (352)
T ss_dssp             TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCT
T ss_pred             eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCC
Confidence                      011223456788888888888876443  22222          22223 2222222  5678888874 


Q ss_pred             -CChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          394 -VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       394 -~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                       .+..++.+.|.++||.+.++.   ..+.+|++++..++++++++++++|+++++++.
T Consensus       292 ~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  349 (352)
T 1iug_A          292 GVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL  349 (352)
T ss_dssp             TCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence             357789999999999998763   137899999888899999999999999988763

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.91  E-value=2.6e-23  Score=208.39  Aligned_cols=303  Identities=14%  Similarity=0.092  Sum_probs=198.5

Q ss_pred             CCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhccC--CCeEE-ecCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008          112 LGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--ADRVF-FSNTGTEANEAAIKFARKFQRHSNPDSK  187 (451)
Q Consensus       112 lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~--~e~v~-~~~sG~eA~~~al~~a~~~~~~~~~~~~  187 (451)
                      +++.++.+.+++.+++.+..... .....+...+++++++++++  .+.++ +++||++|+..+++.+.           
T Consensus        15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~-----------   83 (416)
T 3isl_A           15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI-----------   83 (416)
T ss_dssp             CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC-----------
T ss_pred             ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc-----------
Confidence            55544444455555554422111 11112337789999999987  44454 89999999999998663           


Q ss_pred             CCCceEEEEcCCccCChhh-hhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008          188 EPATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGI  261 (451)
Q Consensus       188 ~~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~~~G~  261 (451)
                      .++|+||+.+++||+.... .....+.            .+..++.+     |+++|+++++.+++++|+++++++++|.
T Consensus        84 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~  151 (416)
T 3isl_A           84 EPEDDVLIPIYGRFGYLLTEIAERYGA------------NVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGR  151 (416)
T ss_dssp             CTTCEEEEEESSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred             CCCCEEEEecCCcccHHHHHHHHhcCC------------eeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCce
Confidence            2689999999999983222 2222221            12223322     8999999997335788888888888887


Q ss_pred             cccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhccCC
Q 013008          262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYG  339 (451)
Q Consensus       262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~  339 (451)
                      +.+    +++|.++|++||+++|+||+|+ +|..  ......+  .+|+++  ++|+++++.++|++++++++++.+.+.
T Consensus       152 ~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~  222 (416)
T 3isl_A          152 IHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVDEW--KIDAAIGGTQKCLSVPSGMAPITYNERVADVIAAR  222 (416)
T ss_dssp             ECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTTTT--TCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC
T ss_pred             ecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchhhc--CCCEEEecCccccCCCCCeEEEEECHHHHHHhhcc
Confidence            766    9999999999999999999996 3222  1122222  356665  559887777899999999988776521


Q ss_pred             C-------------------------------------cc-CCCCCcHHHHHHHHHHHHHhcCh---HHHHH--------
Q 013008          340 D-------------------------------------HG-STFAGSPLVCNAAIAVLDKISNP---AFLAS--------  370 (451)
Q Consensus       340 ~-------------------------------------~~-~t~~~~~~~~aaa~aal~~~~~~---~~~~~--------  370 (451)
                      .                                     .. ...+.+..+++++.++++.+...   +..++        
T Consensus       223 ~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l  302 (416)
T 3isl_A          223 KKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAAL  302 (416)
T ss_dssp             ------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            0                                     11 12245677777777887765432   22222        


Q ss_pred             --HHhCCCCcceecc----cceeEEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeCCCCCCHHH-HHHHHH
Q 013008          371 --KLARNPHVKDVRG----LGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQE-LDQAVE  437 (451)
Q Consensus       371 --~~~~~~~~~~v~g----~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~~~~~t~e~-i~~~l~  437 (451)
                        .++.. .+.....    .+.++++.+.  .+..++.+.|+++ ||.+.++.   .++.+|++++...++++ ++++++
T Consensus       303 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~  381 (416)
T 3isl_A          303 AAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLA  381 (416)
T ss_dssp             HHHHHHT-TCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred             HHHHHHc-CCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHH
Confidence              12222 2211211    2567777773  4678899999887 99998753   24789999866556666 999999


Q ss_pred             HHHHHHHHHh
Q 013008          438 ILCKTLPVLD  447 (451)
Q Consensus       438 ~l~~~l~~~~  447 (451)
                      +|+++++++.
T Consensus       382 ~l~~~~~~~~  391 (416)
T 3isl_A          382 GLEAVLLRHN  391 (416)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999998753

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.91  E-value=7.9e-24  Score=208.12  Aligned_cols=314  Identities=13%  Similarity=0.069  Sum_probs=196.2

Q ss_pred             EEEe-eccCcccccCCC-CCHHHHHHHHHHHhhccc--ccCCCC-CHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHH
Q 013008           99 EYLD-LSSGIAVNALGH-GDADWIKAVVDQANVLTH--VSNMYY-SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIK  173 (451)
Q Consensus        99 ~~iD-~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~--~~~~~~-~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~  173 (451)
                      +|+| |.++.+   ||+ .||.+.+++.++++.+..  ....+. .+...+|+++++++++.+..++++||++|+..+++
T Consensus         4 ~~~~~~~~~~~---l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~   80 (357)
T 3lws_A            4 RLRTSFQQTTG---QISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALR   80 (357)
T ss_dssp             HHHHHHHTCSE---ESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred             hhhhHHHhhcc---cccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHH
Confidence            4555 444333   565 578888888887775321  112222 24478999999999998877888999999999999


Q ss_pred             HHHHHhhhcCCCCCCCCce-EEEEcCCccCChhhh---hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          174 FARKFQRHSNPDSKEPATE-FVSFTNSFHGRTMGA---LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~-ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      ++..           ++++ +|+.++.||......   ....+.....   .+. .+.    .-|+++|+++.   ++++
T Consensus        81 ~~~~-----------~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~---v~~-~~~----~~d~~~l~~~~---~~~~  138 (357)
T 3lws_A           81 IWSD-----------ETDNRTVAYHPLCHLEIHEQDGLKELHPIETIL---VGA-ADR----LMTLDEIKALP---DIAC  138 (357)
T ss_dssp             HHHH-----------HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEE---CSC-TTS----CCCHHHHHTCC---SCSE
T ss_pred             HHhh-----------cCCCcEEEecccceeeeeccchhhhccCcEEEE---ecC-CCC----CcCHHHHhcCc---Ccce
Confidence            7764           2443 667777776543321   1111211100   010 000    12889998873   2677


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-----CCCcccccccccccCCCcc--eeeecccccCCcc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-----GLGRTGYLWAHEHYGIFPD--IMTLAKPLAGGLP  322 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-----g~gr~G~~~~~~~~~~~pd--i~t~sK~lg~G~~  322 (451)
                      |+++++++++|+.+++.+++++|+++|++||++||+||+|.     .+++....+.     ...|  +.++||++++. .
T Consensus       139 v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-----~~~d~~~~s~sK~~~~~-~  212 (357)
T 3lws_A          139 LLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-----GLFDSIYISFYKGLGGI-A  212 (357)
T ss_dssp             EEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-----TTSSEEEEESSSTTCCS-S
T ss_pred             EEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-----hcCCEEEEeccccCCCC-c
Confidence            77777766653357899999999999999999999999975     1222211111     1234  44899999542 2


Q ss_pred             cccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcCh--HHHHH------HHhCCCCcce--ecccceeEEE
Q 013008          323 IGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNP--AFLAS------KLARNPHVKD--VRGLGLIIGI  390 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~------~~~~~~~~~~--v~g~G~~~~~  390 (451)
                      .|++++++++++.+...  ...++.......++++.++|+...+.  ...++      .++.+|.+..  .+..+.++++
T Consensus       213 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~  292 (357)
T 3lws_A          213 GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHL  292 (357)
T ss_dssp             CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEE
T ss_pred             eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEE
Confidence            28888999988877532  12222222333445555667643221  11111      3455665543  2456778888


Q ss_pred             EecCC----hHHHHHHHHHCCceeeecCC--C--CEEEEeCC---CCCCHHHHHHHHHHHHHHH
Q 013008          391 EFDVS----ATPVVDACRDSGLLVLTAGK--G--NVVRLVPP---LIISEQELDQAVEILCKTL  443 (451)
Q Consensus       391 ~~~~~----~~~~~~~l~~~Gv~~~~~~~--~--~~iri~~~---~~~t~e~i~~~l~~l~~~l  443 (451)
                      .+...    ..++.+.|.++||++.|+..  +  ..+|+++.   +..+++++++++++|.+++
T Consensus       293 ~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          293 HFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             EEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             EecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            88533    56788889999999987631  1  36788765   3468999999999998875

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.91  E-value=2.3e-23  Score=207.50  Aligned_cols=302  Identities=13%  Similarity=0.042  Sum_probs=199.4

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e-~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      .+|++.+++.+++..  + +..+......++.++++++++  .+ ++++++||++|+..+++++.           .+++
T Consensus        29 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-----------~~gd   94 (396)
T 2ch1_A           29 CSKRVLTAMTNTVLS--N-FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-----------EEGD   94 (396)
T ss_dssp             CCHHHHHHTTSCCCC--T-TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-----------CTTC
T ss_pred             CCHHHHHHhcccccc--C-CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc-----------CCCC
Confidence            568888887664421  1 111111237789999999987  44 79999999999999999764           1588


Q ss_pred             eEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008          192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      +|++.+|+|+++.. ......|.....   .+...+.    ..|+++|++++++.++++|+++++++++|.+.+    ++
T Consensus        95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~  163 (396)
T 2ch1_A           95 RVLIAVNGIWAERAVEMSERYGADVRT---IEGPPDR----PFSLETLARAIELHQPKCLFLTHGDSSSGLLQP----LE  163 (396)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEE---EECCTTS----CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred             eEEEEcCCcccHHHHHHHHHcCCceEE---ecCCCCC----CCCHHHHHHHHHhCCCCEEEEECCCCCCceecC----HH
Confidence            99999999998641 122222211100   1111110    138999999986424677788777777787666    89


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCC--------
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD--------  340 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~--------  340 (451)
                      +|.++|++||+++|+||+|. +|..  .....  ...+|++++|  |.++++.++|++++++++++.+....        
T Consensus       164 ~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
T 2ch1_A          164 GVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYW  238 (396)
T ss_dssp             THHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG
T ss_pred             HHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEe
Confidence            99999999999999999996 5432  11222  2346877655  99987667799999998887663210        


Q ss_pred             ---------------ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceeccc-----cee
Q 013008          341 ---------------HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVRGL-----GLI  387 (451)
Q Consensus       341 ---------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~g~-----G~~  387 (451)
                                     ....++.+..+++++.++|+.+.++   +..++          .++++. +..+.+.     +.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~  317 (396)
T 2ch1_A          239 DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG-LDIFVKDPRHRLPTV  317 (396)
T ss_dssp             CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCSGGGBCTTE
T ss_pred             chHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CeeccCCccccCCce
Confidence                           1112345677888888888765222   12221          122221 2112222     346


Q ss_pred             EEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          388 IGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       388 ~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +++.+.  .+..++.+.|+++ ||.+.++.   .++.+|+++ ++.+++|++++++++|++++++++
T Consensus       318 ~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~  384 (396)
T 2ch1_A          318 TGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  384 (396)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence            777763  3577899999876 99998753   237899998 567899999999999999998765

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.3e-23  Score=211.61  Aligned_cols=318  Identities=15%  Similarity=0.088  Sum_probs=203.3

Q ss_pred             CCCHHHHHHHHHHHhhcccccC--CCCC----HHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 013008          114 HGDADWIKAVVDQANVLTHVSN--MYYS----IPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSN  183 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~~~~~--~~~~----~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~~  183 (451)
                      ++++.+.+++.+++........  +...    ....+++++++++++.    +++++++||++|+..++++++.++....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~  154 (497)
T 3mc6_A           75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR  154 (497)
T ss_dssp             CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence            3568999999998887433211  1112    2255777888888773    4899999999999999999987653221


Q ss_pred             CCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008          184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY  262 (451)
Q Consensus       184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~  262 (451)
                      +.   +++.|++.+++|+.+. .+....|.....   .+..+ +..    -|+++|++++++ ++++|+++.++++.|.+
T Consensus       155 g~---~~~~Vi~~~~~h~~~~-~~~~~~G~~~~~---v~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~p~nptG~~  222 (497)
T 3mc6_A          155 GI---TEPEIIAPVTAHAGFD-KAAYYFGMKLRH---VELDPTTYQ----VDLGKVKKFINK-NTVLLVGSAPNFPHGIA  222 (497)
T ss_dssp             CC---SSCEEEEETTSCHHHH-HHHHHSCCEEEE---ECBCTTTCS----BCTTTTGGGCCS-SEEEEEEETTCTTTCCC
T ss_pred             CC---CCceEEEeCCccHHHH-HHHHHcCCeEEE---EecCcccCc----CCHHHHHHHHhh-CCEEEEEECCCCCCCcC
Confidence            11   2478888888876544 333332221111   11111 111    168899999975 57888888888888887


Q ss_pred             ccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc-----c--c--cccccccCCCcceee--ecccccCCcccccccccHH
Q 013008          263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-----G--Y--LWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEK  331 (451)
Q Consensus       263 ~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-----G--~--~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~  331 (451)
                      .+    +++|+++|++||++||+||+|+++.+.     |  .  .+.....+  .|+++  +.|.+.+|.++|+++++++
T Consensus       223 ~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g--~d~~~~s~~K~l~~~~~~g~~~~~~~  296 (497)
T 3mc6_A          223 DD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPKGSSVIMYRNS  296 (497)
T ss_dssp             CS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT--CCEEEEETTTTTCCCSSCEEEECSSH
T ss_pred             CC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC--CcEEEECchhhcCCCCCceeEEecCH
Confidence            66    889999999999999999999865332     1  1  12233334  35554  4588877889999998766


Q ss_pred             HHhhccC----CCccC-----CCCC--cHHHHHHHHHHHHHhcChHHHH---H----------HHhC-CCCccee-cccc
Q 013008          332 VASAINY----GDHGS-----TFAG--SPLVCNAAIAVLDKISNPAFLA---S----------KLAR-NPHVKDV-RGLG  385 (451)
Q Consensus       332 i~~~~~~----~~~~~-----t~~~--~~~~~aaa~aal~~~~~~~~~~---~----------~~~~-~~~~~~v-~g~G  385 (451)
                      .+.....    ....+     ++.+  +....++..++++.+..+++.+   +          .+++ +|.+..+ .+.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~  376 (497)
T 3mc6_A          297 DLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRY  376 (497)
T ss_dssp             HHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCS
T ss_pred             HHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCe
Confidence            5544321    11111     1111  2222334444444443332221   1          2333 4544333 3455


Q ss_pred             eeEEEEec-CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008          386 LIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS  450 (451)
Q Consensus       386 ~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~  450 (451)
                      .++.+... .+..++.+.|.++||.+.+...+..+|++++ .+|++++++++++|++++++++.++
T Consensus       377 ~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~~  441 (497)
T 3mc6_A          377 SVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELKSES  441 (497)
T ss_dssp             SEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC-
T ss_pred             eEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            66666653 4678899999999999887654456899988 7899999999999999998876553

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.91  E-value=2.3e-23  Score=209.12  Aligned_cols=279  Identities=19%  Similarity=0.146  Sum_probs=190.6

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+..+.++...+|+++|+++.+.+.+++++||++|+..+++++.           .++|+||+.+++||+........ 
T Consensus        73 ~~y~r~~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~-  140 (414)
T 3ndn_A           73 YVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALL-----------GAGDRLVAARSLFGSCFVVCSEI-  140 (414)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTTCEEEEESCCCHHHHHHHHTH-
T ss_pred             cCcCCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEcCCccchHHHHHHHH-
Confidence            445566778899999999999999999999999999999998654           26899999999999864332110 


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                              +......+.+++.+|+++|++++++ ++++|++|++++++|.+.+    +++|+++|++||++||+||+|+ 
T Consensus       141 --------~~~~g~~~~~v~~~d~~~l~~ai~~-~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~-  206 (414)
T 3ndn_A          141 --------LPRWGVQTVFVDGDDLSQWERALSV-PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA-  206 (414)
T ss_dssp             --------HHHTTCEEEEECTTCHHHHHHHTSS-CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-
T ss_pred             --------HHHcCcEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCc-
Confidence                    0112245667888899999999975 6788999999999888766    9999999999999999999996 


Q ss_pred             CCcccccccccccCCCcceeeecccccC-C-cccccccccHHHHh-hccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH
Q 013008          292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-G-LPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA  366 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~t~sK~lg~-G-~~iG~v~~~~~i~~-~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~  366 (451)
                         +|..+....++..+.+.+++|.+++ | +++|+++++++.+. .+...........+++.+++++..++.+..  +.
T Consensus       207 ---~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~  283 (414)
T 3ndn_A          207 ---TPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQH  283 (414)
T ss_dssp             ---HHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHH
T ss_pred             ---ccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence               2221222244555555678999987 7 89999999987765 443211111223467777766665554321  11


Q ss_pred             HHHH------HHhCCCCcce------------------ecccceeEEEEecCC-------hHHHHHHHHHCCceeeecC-
Q 013008          367 FLAS------KLARNPHVKD------------------VRGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAG-  414 (451)
Q Consensus       367 ~~~~------~~~~~~~~~~------------------v~g~G~~~~~~~~~~-------~~~~~~~l~~~Gv~~~~~~-  414 (451)
                      ..++      .++++|.+..                  ++|.|.+++|++...       ..+|.+.|...++.+..++ 
T Consensus       284 ~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~  363 (414)
T 3ndn_A          284 SNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDA  363 (414)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCS
T ss_pred             HHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCC
Confidence            1111      4455554432                  256789999999532       3455555554444433221 


Q ss_pred             -------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          415 -------------------------KGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       415 -------------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                                               ..+.+|+++.+    |+.+.+++.|+++|
T Consensus       364 ~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al  413 (414)
T 3ndn_A          364 KSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL  413 (414)
T ss_dssp             SCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             CceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence                                     13678887654    56667777777765

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.90  E-value=7.1e-23  Score=204.61  Aligned_cols=318  Identities=14%  Similarity=0.098  Sum_probs=201.0

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHh-hcccccC---CC-CCHHHHHHH----HHHhhccCCCeE-EecCCHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVSN---MY-YSIPQIELA----KRLVACSFADRV-FFSNTGTEA  167 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~---~~-~~~~~~~l~----~~l~~~~~~e~v-~~~~sG~eA  167 (451)
                      +.++|+.++.+   +   +|++++|+.+++. .+..++.   .+ ......+++    ++++++++.+.. +++++|++|
T Consensus        24 ~~~~~~~~~~~---~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a   97 (405)
T 2vi8_A           24 AKIELIASENF---V---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQA   97 (405)
T ss_dssp             HSEECCTTCCC---C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred             cceeeccCccc---C---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHH
Confidence            34677765533   3   8999999999885 3322111   11 223344444    688888885544 456788999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhh--hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA--LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG  245 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  245 (451)
                      +..+++++.           .++++|++.++.|+......  ....+.. ......+..+..   ...|+++|++++++.
T Consensus        98 ~~~a~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~~d~~~l~~~i~~~  162 (405)
T 2vi8_A           98 NMAVYFTVL-----------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQ-YNFVAYGVDPET---HVIDYDDVREKARLH  162 (405)
T ss_dssp             HHHHHHHHC-----------CTTCEEEEECGGGTCCTTTTCTTSHHHHH-SEEEEECBCTTT---CSBCHHHHHHHHHHH
T ss_pred             HHHHHHHhc-----------CCCCEEEEecccccchhcccchhhhccce-eEEEeccccccc---CCcCHHHHHHHHHhc
Confidence            999999774           15889999998876553211  1111110 000000100000   013899999998642


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Cccee--eecccccCCcc
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLAGGLP  322 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~--t~sK~lg~G~~  322 (451)
                      ++++|++.|.+  .|...+    +++|+++|++||++||+||+|+ +|+.+....  ...+ .+|++  +++|+++|+..
T Consensus       163 ~~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~--~~~~~~~di~~~s~sK~~~g~~g  233 (405)
T 2vi8_A          163 RPKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGLH--PNPVPYAHFVTTTTHKTLRGPRG  233 (405)
T ss_dssp             CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS--CCSTTTCSEEEEESSSTTCCCSC
T ss_pred             CCeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCcC--CCccccCCEEEEeccccCCCCCC
Confidence            46777775532  232223    8999999999999999999997 544432111  1112 46776  78999985433


Q ss_pred             cccccccHHHHhhccCCCccCCCCC-cHHHHHHHHHHHHHhcC---hHHHHH----------HHhCCCCcceec--ccce
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAG-SPLVCNAAIAVLDKISN---PAFLAS----------KLARNPHVKDVR--GLGL  386 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~----------~~~~~~~~~~v~--g~G~  386 (451)
                       |++++++++++.+.......++++ ++..++++.++++.+..   ++..++          .++++. +..+.  +.+.
T Consensus       234 -G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~  311 (405)
T 2vi8_A          234 -GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEG-FTLVSGGTDNH  311 (405)
T ss_dssp             -EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS
T ss_pred             -eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeEecCCCCce
Confidence             999999998887754322334444 56777777778876543   222222          222222 22222  3578


Q ss_pred             eEEEEec---CChHHHHHHHHHCCceeeecC---------CCCEEEEeCCC----CCCHHHHHHHHHHHHHHHHHHh
Q 013008          387 IIGIEFD---VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       387 ~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++++.+.   .....+.+.|.++||.+.++.         .++.+|++++.    .++++++++++++|++++++++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~  388 (405)
T 2vi8_A          312 LLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG  388 (405)
T ss_dssp             EEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred             EEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence            8888874   256788899999999998752         13579999886    6799999999999999987664

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.90  E-value=1.5e-22  Score=196.93  Aligned_cols=269  Identities=13%  Similarity=0.072  Sum_probs=189.8

Q ss_pred             HHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC
Q 013008          144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV  223 (451)
Q Consensus       144 ~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  223 (451)
                      +++++++++++.+..++++||++|+..+++.+.           .++++|++.++.||+..........         ..
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~-----------~~g~~v~~~~~~~~~~~~~~~~~~~---------~~   61 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFL-----------KAGDHLISDDCLYGCTHALFEHQLR---------KF   61 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTHHH---------HT
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-----------CCCCEEEEcCCCcchHHHHHHHHHH---------hc
Confidence            577888888887788888889999999999653           1578999999999986543321100         01


Q ss_pred             CCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH-hCCEEEEeccccCCCccccccccc
Q 013008          224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AGALLVFDEVQCGLGRTGYLWAHE  302 (451)
Q Consensus       224 ~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~tg~gr~G~~~~~~  302 (451)
                      ...+.+++..|++++++.+++ ++++|+++++++++|.+.+    +++|.++|++ ||+++|+||+|+.+ ....  .. 
T Consensus        62 g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~~~--~~-  132 (331)
T 1pff_A           62 GVEVDFIDMAVPGNIEKHLKP-NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-ILTN--PL-  132 (331)
T ss_dssp             TCEEEEECTTSTTHHHHTCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HHCC--GG-
T ss_pred             CCEEEEeCCCCHHHHHHhhcC-CCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-ccCC--hh-
Confidence            123445666789999999974 6889999998888888776    9999999999 99999999999632 2111  11 


Q ss_pred             ccCCCcceeeecccccC-Ccc-cccccccH-HHHhhccCCCcc-CCCCCcHHHHHHHHHHHHHhcC--hHHHHH------
Q 013008          303 HYGIFPDIMTLAKPLAG-GLP-IGAALVTE-KVASAINYGDHG-STFAGSPLVCNAAIAVLDKISN--PAFLAS------  370 (451)
Q Consensus       303 ~~~~~pdi~t~sK~lg~-G~~-iG~v~~~~-~i~~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~--~~~~~~------  370 (451)
                      .++....+.+++|.+++ |.| +|++++++ ++++.+.+.... .+.+.+++.+.++.++++.+..  +.+.++      
T Consensus       133 ~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  212 (331)
T 1pff_A          133 DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAE  212 (331)
T ss_dssp             GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence            23434444578999986 678 78999998 998888765555 5667888888887777764321  111111      


Q ss_pred             HHhCCC--------Ccce----------ecccceeEEEEecCChHHHHHHHHHCCceeeec-------------------
Q 013008          371 KLARNP--------HVKD----------VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA-------------------  413 (451)
Q Consensus       371 ~~~~~~--------~~~~----------v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------------------  413 (451)
                      .+++.+        .+..          .++.|.++.+.+. ....+.+.|.++||++.+.                   
T Consensus       213 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~  291 (331)
T 1pff_A          213 FLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAG  291 (331)
T ss_dssp             HHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTT
T ss_pred             HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccc
Confidence            121111        1111          1345778888875 5667888888899976432                   


Q ss_pred             ---------CC-CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          414 ---------GK-GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       414 ---------~~-~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                               +. .+.+|++++...++++++++++.|+++
T Consensus       292 ~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          292 VPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             SCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence                     11 368999999999999999999988754

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.90  E-value=1.5e-22  Score=204.28  Aligned_cols=331  Identities=18%  Similarity=0.152  Sum_probs=192.7

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC------HHHHHHHHHHhhccC--CCeEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS------IPQIELAKRLVACSF--ADRVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~--~e~v~~~~sG~eA  167 (451)
                      +|..|+|+.++.      +.+|++++++.+++......+...+.      +...++.++++++++  .+++++++||++|
T Consensus        17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   90 (432)
T 3a9z_A           17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES   90 (432)
T ss_dssp             -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred             CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence            567888876642      57999999999998763211111111      124689999999887  4689999999999


Q ss_pred             HHHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC----cCCCCCeeEeeC------CCHH
Q 013008          168 NEAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF----EPVMPGVNFVEY------GNIE  236 (451)
Q Consensus       168 ~~~al~~a~~-~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~d~~  236 (451)
                      ++.+++.+.. +.....    .++++|++++|+||++................+    ......+..++.      .|++
T Consensus        91 ~~~~~~~~~~~~~~~~~----~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~  166 (432)
T 3a9z_A           91 NNLVIHSTVRCFHEQQT----LQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVE  166 (432)
T ss_dssp             HHHHHHHHHHHHHHHHH----HC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHH
T ss_pred             HHHHHHHHHhhhhhccc----cCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHH
Confidence            9999998742 210000    047899999999998621100000000000000    000111222222      2799


Q ss_pred             HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC----------CEEEEeccccCCCcccccccccccCC
Q 013008          237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG----------ALLVFDEVQCGLGRTGYLWAHEHYGI  306 (451)
Q Consensus       237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g----------~llI~DEv~tg~gr~G~~~~~~~~~~  306 (451)
                      +|++++++ ++++|+++++++++|.+.+    +++|.++|++||          +++|+||+|. +|...  .....  .
T Consensus       167 ~l~~~i~~-~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~--~~~~~--~  236 (432)
T 3a9z_A          167 DILAAVRP-TTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR--VDVED--L  236 (432)
T ss_dssp             HHHHTCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC--CCHHH--H
T ss_pred             HHHHhccC-CceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc--cChhh--c
Confidence            99999975 6889999998888888777    789999999999          9999999994 54332  11112  2


Q ss_pred             Cccee--eecccccCCcccccccccHHH-HhhccCCC-------ccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----
Q 013008          307 FPDIM--TLAKPLAGGLPIGAALVTEKV-ASAINYGD-------HGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----  370 (451)
Q Consensus       307 ~pdi~--t~sK~lg~G~~iG~v~~~~~i-~~~~~~~~-------~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----  370 (451)
                      .+|++  +++|.+  |.++|++++++++ ...+.+..       ...+++.|+++++++.++++.+.+  ++..++    
T Consensus       237 ~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~  314 (432)
T 3a9z_A          237 GVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDI  314 (432)
T ss_dssp             CCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            46766  458976  4569999998775 34443321       112345688888888888886543  122221    


Q ss_pred             ---H---HhCCCCcce--------ecccceeEEEEecC---ChHHHHHHHH----HCCceeeec------------CC--
Q 013008          371 ---K---LARNPHVKD--------VRGLGLIIGIEFDV---SATPVVDACR----DSGLLVLTA------------GK--  415 (451)
Q Consensus       371 ---~---~~~~~~~~~--------v~g~G~~~~~~~~~---~~~~~~~~l~----~~Gv~~~~~------------~~--  415 (451)
                         +   +++++....        .+..+.+.++.+..   ....+.+.+.    +.|+.+.+.            +.  
T Consensus       315 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~  394 (432)
T 3a9z_A          315 RDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPV  394 (432)
T ss_dssp             HHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCH
T ss_pred             HHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCc
Confidence               1   122211110        11235566676632   3455555441    223333221            11  


Q ss_pred             ---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          416 ---GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       416 ---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                         .+.+|++++..+|+||+++++++|++++++++.
T Consensus       395 ~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~  430 (432)
T 3a9z_A          395 DVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG  430 (432)
T ss_dssp             HHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence               268999999888999999999999999987653

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.90  E-value=1e-22  Score=203.41  Aligned_cols=233  Identities=15%  Similarity=0.144  Sum_probs=166.0

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+..+.++...+|+++|+++.+.+.+++++||++|++.++.+++            ++++||+.++.||+.........
T Consensus        59 ~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~~~l~~------------~gd~Vi~~~~~y~~~~~~~~~~~  126 (400)
T 3nmy_A           59 FEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAATSTVMELLD------------AGSHVVAMDDLYGGTFRLFERVR  126 (400)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTSC------------TTCEEEEESSCCHHHHHHHHHTH
T ss_pred             cccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHHHHHcC------------CCCEEEEeCCCchHHHHHHHHhh
Confidence            345567788899999999999998899999999999998543222            68899999999987654332210


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                              +......+.+++.+|+++|++++++ ++++|++|++++++|.+.+    +++|+++|++||+++|+||+|+.
T Consensus       127 --------~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~  193 (400)
T 3nmy_A          127 --------RRTAGLDFSFVDLTDPAAFKAAIRA-DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS  193 (400)
T ss_dssp             --------HHHHCCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred             --------HhhcCeEEEEECCCCHHHHHHHhcc-CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc
Confidence                    0011234567788899999999975 6899999999999998776    99999999999999999999952


Q ss_pred             CCcccccccccccCCCcceeeecccccC-Cccccc--cc-ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h
Q 013008          292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGA--AL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P  365 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~--v~-~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~  365 (451)
                      . ...   ....++..+.+.+++|+++| |.++|.  ++ .++++++.+.......+...+|+.+++++..++.+..  +
T Consensus       194 ~-~~~---~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~~r~~  269 (400)
T 3nmy_A          194 P-MLQ---RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMR  269 (400)
T ss_dssp             H-HHC---CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHHHHHH
T ss_pred             c-ccC---ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHHHHHH
Confidence            1 111   12223545555579999986 466544  33 4778888776444445566788888888777765421  1


Q ss_pred             HHHHH------HHhCCCCccee------------------cccceeEEEEec
Q 013008          366 AFLAS------KLARNPHVKDV------------------RGLGLIIGIEFD  393 (451)
Q Consensus       366 ~~~~~------~~~~~~~~~~v------------------~g~G~~~~~~~~  393 (451)
                      ...++      .++.+|.+..+                  +|.|.+++|++.
T Consensus       270 ~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~  321 (400)
T 3nmy_A          270 AHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK  321 (400)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred             HHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence            11111      44566766555                  778999999995

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.90  E-value=8.5e-23  Score=210.15  Aligned_cols=314  Identities=11%  Similarity=0.045  Sum_probs=198.0

Q ss_pred             CCHHHHHHHHHHHhhccc-ccCCC-----CCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 013008          115 GDADWIKAVVDQANVLTH-VSNMY-----YSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      -++++++++.+++..... ....|     ....+.++++++.+..+    .++|++|+||++|+..+++++..  .    
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~----  180 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR--N----  180 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC--S----
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC--C----
Confidence            567788888887776321 11112     22335666666655433    68999999999999999997630  1    


Q ss_pred             CCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEEEEEccccCCC
Q 013008          185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVEPIQGEG  259 (451)
Q Consensus       185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aavi~ep~~~~~  259 (451)
                          ++|.|++.+|+|+++.......+.... .   .+...+..+  ..|+++|++.+++     .++++|++...++++
T Consensus       181 ----~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPt  250 (500)
T 3tcm_A          181 ----EKDGILVPIPQYPLYSASIALHGGALV-P---YYLNESTGW--GLETSDVKKQLEDARSRGINVRALVVINPGNPT  250 (500)
T ss_dssp             ----TTEEEEEEESCCTHHHHHHHHTTCEEE-E---EECBTTTTS--BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTT
T ss_pred             ----CCCEEEEeCCCcHhHHHHHHHcCCEEE-E---EecccccCC--CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCC
Confidence                589999999999887654433322111 1   011110000  1389999999863     145555555445555


Q ss_pred             CccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--cccc----cccCC-C--cc-ee--eecccc-c-CCccccc
Q 013008          260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAH----EHYGI-F--PD-IM--TLAKPL-A-GGLPIGA  325 (451)
Q Consensus       260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~----~~~~~-~--pd-i~--t~sK~l-g-~G~~iG~  325 (451)
                      |. +++.+.+++|+++|++||+++|+||+|.++.+.+.  ...+    ..++. .  .+ ++  +|||++ | .|+|+||
T Consensus       251 G~-~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~  329 (500)
T 3tcm_A          251 GQ-VLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGY  329 (500)
T ss_dssp             CC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEE
T ss_pred             cc-cCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEE
Confidence            54 67899999999999999999999999988644321  1111    12221 1  12 22  889999 5 4899999


Q ss_pred             ccc---cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----------hcC-hHHHHH----------HHhCCCCcce
Q 013008          326 ALV---TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----------ISN-PAFLAS----------KLARNPHVKD  380 (451)
Q Consensus       326 v~~---~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~~~~~----------~~~~~~~~~~  380 (451)
                      +++   ++++++.+.... ..+++.++++++++.++++.           .+. +...++          .++++|.+..
T Consensus       330 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~  408 (500)
T 3tcm_A          330 FEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITC  408 (500)
T ss_dssp             EEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             EEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            987   888888775322 34566788888888777741           111 111111          3345565555


Q ss_pred             ecccc-eeEEEEecCC--------------hHHHH-HHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHH
Q 013008          381 VRGLG-LIIGIEFDVS--------------ATPVV-DACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEI  438 (451)
Q Consensus       381 v~g~G-~~~~~~~~~~--------------~~~~~-~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~  438 (451)
                      ..+.| +++++.+...              ...++ +.|.++||++.|+..      .+.+|+++.  ++++++++++++
T Consensus       409 ~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~  486 (500)
T 3tcm_A          409 NEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISR  486 (500)
T ss_dssp             CCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHH
T ss_pred             ecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHH
Confidence            55554 4445444311              12233 444467999998631      246898766  899999999999


Q ss_pred             HHHHHHHHhh
Q 013008          439 LCKTLPVLDS  448 (451)
Q Consensus       439 l~~~l~~~~~  448 (451)
                      |.++++++.+
T Consensus       487 l~~~~~~~~~  496 (500)
T 3tcm_A          487 FTVFHEAFMS  496 (500)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987653

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.90  E-value=3.5e-23  Score=203.52  Aligned_cols=299  Identities=13%  Similarity=0.070  Sum_probs=187.3

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce-E
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE-F  193 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~-i  193 (451)
                      .||++.+|+.+.+..    ..+++.+...+|+++++++++.+..++++||++|+..+++++...           +++ +
T Consensus        27 ~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~-----------g~~~v   91 (359)
T 3pj0_A           27 VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADR-----------KENRR   91 (359)
T ss_dssp             HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHH-----------HTCCE
T ss_pred             CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhc-----------CCCcE
Confidence            467777777763322    122345668899999999999777788899999999999987642           344 6


Q ss_pred             EEEcCCccCChhh--hh-hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008          194 VSFTNSFHGRTMG--AL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       194 i~~~~~yhg~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      |+.++.+|.+...  .. ...+.....   .+. .+.    .-|+++|+++  .+++++|+++++++++|+.+++.++++
T Consensus        92 vi~~~~~~~~~~~~~~~~~~~g~~~~~---v~~-~~~----~~d~~~l~~~--~~~~~~v~~~~p~n~~~G~~~~~~~l~  161 (359)
T 3pj0_A           92 VAYHPLSHLEIHEQDGLKELQQITPLL---LGT-ANQ----LLTIDDIKSL--REPVSSVLIELPQREIGGQLPAFEELE  161 (359)
T ss_dssp             EEECTTCHHHHSSTTHHHHHHCCEEEE---CSC-TTS----CCCHHHHHTC--SSCCSEEEEESSBGGGTSBCCCHHHHH
T ss_pred             EEEeccceeeehhcchHHHhcCceEEe---cCC-cCC----CcCHHHHHhc--cCCceEEEEEecccCCCcccCCHHHHH
Confidence            7777666654322  11 112211111   011 010    1288999988  346788888877666544678999999


Q ss_pred             HHHHHHHHhCCEEEEeccccCCC--cccccccccccCCCccee--eecccccCCcccccccccHHHHhhccCC--Ccc-C
Q 013008          271 FLRDACDDAGALLVFDEVQCGLG--RTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG--DHG-S  343 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~g--r~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~-~  343 (451)
                      +|+++|++||++||+||+|..+.  ..|..  ...+....|++  ++||+++++.. |++++++++++.+...  ... .
T Consensus       162 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~~  238 (359)
T 3pj0_A          162 KISEYCHEQGISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGGD  238 (359)
T ss_dssp             HHHHHHHHHTCEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999975321  11111  11111234555  78999876433 7778899998887531  112 2


Q ss_pred             CCCCcHHHHHHHHHHHHHhc-C-hHHHHH------HHhCCCCccee--cccceeEEEEecC----ChHHHHHHHHHCCce
Q 013008          344 TFAGSPLVCNAAIAVLDKIS-N-PAFLAS------KLARNPHVKDV--RGLGLIIGIEFDV----SATPVVDACRDSGLL  409 (451)
Q Consensus       344 t~~~~~~~~aaa~aal~~~~-~-~~~~~~------~~~~~~~~~~v--~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~  409 (451)
                      ++..++.+ +++.++++... . ....++      .++++|.+...  ...+.++++.+..    ....+.+.|.++||+
T Consensus       239 ~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~  317 (359)
T 3pj0_A          239 LISLYPYI-LSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVG  317 (359)
T ss_dssp             CSCCHHHH-HHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEE
T ss_pred             cchhHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcE
Confidence            33344444 44445665432 1 111111      34455544432  3556677777743    246788899999999


Q ss_pred             eeecCC-----CCEEEEeCCC---CCCHHHHHHHHHHHHHH
Q 013008          410 VLTAGK-----GNVVRLVPPL---IISEQELDQAVEILCKT  442 (451)
Q Consensus       410 ~~~~~~-----~~~iri~~~~---~~t~e~i~~~l~~l~~~  442 (451)
                      +.|+..     ..++|+++..   ..+.|++++++++|.++
T Consensus       318 v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          318 ISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             CCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             ecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            988631     1467876543   36899999999998875

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.90  E-value=7e-23  Score=202.54  Aligned_cols=285  Identities=15%  Similarity=0.164  Sum_probs=189.9

Q ss_pred             HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 013008          119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN  198 (451)
Q Consensus       119 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~  198 (451)
                      +.+++.+.+...    .+++.+...+++++++++++.+++++++||++|++.+++.+.  .        .++++|++.++
T Consensus        21 ~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~--~--------~~gd~v~~~~~   86 (374)
T 3uwc_A           21 YLNDLREFIKTA----DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLN--I--------GAGDEVITCAN   86 (374)
T ss_dssp             HHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEEESS
T ss_pred             HHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCCCEEEECCC
Confidence            667776666543    234566789999999999998899999999999999999762  1        25889999999


Q ss_pred             CccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHH
Q 013008          199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR  273 (451)
Q Consensus       199 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~  273 (451)
                      +||+........+.             .+..++.+     |+++|++.+++ ++++|+  |.+ +.|...+    +++|.
T Consensus        87 ~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~--~~n-~~G~~~~----~~~i~  145 (374)
T 3uwc_A           87 TFIASVGAIVQAGA-------------TPVLVDSENGYVIDPEKIEAAITD-KTKAIM--PVH-YTGNIAD----MPALA  145 (374)
T ss_dssp             SCHHHHHHHHHTTC-------------EEEEECBCTTSSBCGGGTGGGCCT-TEEEEC--CBC-GGGCCCC----HHHHH
T ss_pred             ccHHHHHHHHHcCC-------------EEEEEecCCCCCcCHHHHHHhCCC-CceEEE--EeC-CcCCcCC----HHHHH
Confidence            99987644332221             12223332     78899999875 567776  444 4566555    99999


Q ss_pred             HHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec----ccccC-Cccccccccc-HHHHhhccCC--------
Q 013008          274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALVT-EKVASAINYG--------  339 (451)
Q Consensus       274 ~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~~-~~i~~~~~~~--------  339 (451)
                      ++|++||+++|+||+|+.+..    +.....+..+|++++|    |.+++ |. +|+++++ +++++.+...        
T Consensus       146 ~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~  220 (374)
T 3uwc_A          146 KIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINR  220 (374)
T ss_dssp             HHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEET
T ss_pred             HHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCcccc
Confidence            999999999999999973322    2233445557888877    99987 65 7777765 4665544321        


Q ss_pred             ----CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------HH---hCCCC-ccee-ccc---ce--eEEEEecCChHH
Q 013008          340 ----DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------KL---ARNPH-VKDV-RGL---GL--IIGIEFDVSATP  398 (451)
Q Consensus       340 ----~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~~---~~~~~-~~~v-~g~---G~--~~~~~~~~~~~~  398 (451)
                          ..+.++..+++.++++...++.++  ++.++       +.   +.++. +... ...   ..  .+.+.. .+..+
T Consensus       221 ~~~~~~~~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  297 (374)
T 3uwc_A          221 DVCVEYGINCRMDTIQAVIANRLMNQLE--TITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-KYRDQ  297 (374)
T ss_dssp             TEESSCCCBCBCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE-TTHHH
T ss_pred             CccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc-CCHHH
Confidence                112334456777766665544322  12221       22   22332 2111 011   11  122222 35778


Q ss_pred             HHHHHHHCCceeeecCC--------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          399 VVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       399 ~~~~l~~~Gv~~~~~~~--------------------------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +.+.|.++||.+.++..                          .+.+|+.++..+|+|||++++++|++++++.
T Consensus       298 l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          298 LFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK  371 (374)
T ss_dssp             HHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999998876530                          0578999999999999999999999998753

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.90  E-value=4.5e-22  Score=196.60  Aligned_cols=298  Identities=14%  Similarity=0.126  Sum_probs=195.1

Q ss_pred             CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceE
Q 013008          114 HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF  193 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~i  193 (451)
                      ..+|++++++.++++....    .+.....++++.|+++++.+++++++||++|+..++++++.+.        .++++|
T Consensus        10 ~~~~~v~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~--------~~gd~V   77 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLNSKQL----TQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFS--------ADRNEI   77 (375)
T ss_dssp             CCCHHHHHHHHHHHTSSCC----SSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCC--------TTSCEE
T ss_pred             CCCHHHHHHHHHHHHcCcc----cCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccC--------CCCCEE
Confidence            3689999999998875321    2345678999999999998899999999999999999762101        158899


Q ss_pred             EEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHH
Q 013008          194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR  273 (451)
Q Consensus       194 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~  273 (451)
                      ++.+++||+........+.... .   .+..++.    ..|+++|++.+++ ++++|++...   +|.+.+    +++|.
T Consensus        78 l~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~----~~d~~~l~~~i~~-~~~~v~~~~~---tG~~~~----l~~i~  141 (375)
T 2fnu_A           78 ITTPISFVATANMLLESGYTPV-F---AGIKNDG----NIDELALEKLINE-RTKAIVSVDY---AGKSVE----VESVQ  141 (375)
T ss_dssp             EECSSSCTHHHHHHHHTTCEEE-E---CCBCTTS----SBCGGGSGGGCCT-TEEEEEEECG---GGCCCC----HHHHH
T ss_pred             EECCCccHhHHHHHHHCCCEEE-E---eccCCCC----CCCHHHHHhhcCc-CceEEEEeCC---cCCccC----HHHHH
Confidence            9999999987654433221111 1   1111111    1278889988875 5666554443   566655    89999


Q ss_pred             HHHHHhCCEEEEeccccCCCcccccccccccCC--Ccceeeec--ccccCCcccccccc-c-HHHHhhccCCC-------
Q 013008          274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLA--KPLAGGLPIGAALV-T-EKVASAINYGD-------  340 (451)
Q Consensus       274 ~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~--~pdi~t~s--K~lg~G~~iG~v~~-~-~~i~~~~~~~~-------  340 (451)
                      ++|++||+++|+||+|+. |....   ....+.  ..++.++|  |.+++|  +|++++ + +++++.+....       
T Consensus       142 ~l~~~~~~~li~D~a~~~-~~~~~---~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~  215 (375)
T 2fnu_A          142 KLCKKHSLSFLSDSSHAL-GSEYQ---NKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKK  215 (375)
T ss_dssp             HHHHHHTCEEEEECTTCT-TCEET---TEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEES
T ss_pred             HHHHHcCCEEEEECcccc-CCeEC---CeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCccc
Confidence            999999999999999963 32211   111222  24455788  999654  677776 3 67766553211       


Q ss_pred             ---------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecc------cceeEEEEecC-
Q 013008          341 ---------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRG------LGLIIGIEFDV-  394 (451)
Q Consensus       341 ---------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g------~G~~~~~~~~~-  394 (451)
                               .+.++..+++.++++...++.++  ...++          .++.+|.+.....      .+.++++.+.. 
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (375)
T 2fnu_A          216 DFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP--FLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK  293 (375)
T ss_dssp             SSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG
T ss_pred             cccccccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc
Confidence                     12223566777766665544332  11111          3344553332222      23455666642 


Q ss_pred             ---ChHHHHHHHHHCCceeeec----C-------------C-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          395 ---SATPVVDACRDSGLLVLTA----G-------------K-------GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       395 ---~~~~~~~~l~~~Gv~~~~~----~-------------~-------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                         ...++.+.|.++||.+...    .             .       .+.+|++++..+|++|+++++++|++++++++
T Consensus       294 ~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~  373 (375)
T 2fnu_A          294 FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESFK  373 (375)
T ss_dssp             GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence               5678999999999988721    0             0       15699998888999999999999999987754

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.89  E-value=3.2e-23  Score=207.82  Aligned_cols=317  Identities=9%  Similarity=0.044  Sum_probs=195.2

Q ss_pred             CEEEeeccCcccccCC-CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-C-------CCeEE--ecCCHHH
Q 013008           98 REYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F-------ADRVF--FSNTGTE  166 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~e~v~--~~~sG~e  166 (451)
                      ..+|||..|.+   ++ ..+|.+.+++.++.....+.  +.......+|.+.+++++ +       .+++.  .+++|++
T Consensus        41 ~~~i~l~~g~~---~d~~~~~~v~~a~~~a~~~~~~~--y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g  115 (409)
T 4eu1_A           41 KRKVNLSIGVY---RDDADQPFVLECVKQATLGTNMD--YAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG  115 (409)
T ss_dssp             SSCEECCCSSC---CCTTSCCCCCHHHHTCCCCSCCC--CCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred             cCceeeeeeEE---ECCCCCEeecHHHHhcCcccccc--CCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence            45789988875   22 35677888887763222121  112222345555555543 3       45674  4999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--C
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--P  244 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~  244 (451)
                      |++.+..+++.++.        ++|+|++.+|+|+++.......+.. ....+... ..+..    .|+++|++.++  +
T Consensus       116 a~~~~~~~~~~~~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~~~~~~-~~~~~----~d~~~l~~~l~~~~  181 (409)
T 4eu1_A          116 ALRIGGDLLNRFVA--------NCNRIYGPDVGYPNHESIFAKAGME-LTPYSYYD-PATKG----LNLAGMLECLDKAP  181 (409)
T ss_dssp             HHHHHHHHGGGTSS--------SCCEEEEESSCCTHHHHHHHHTTCE-EEEECCEE-TTTTE----ECHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhcC--------CCCEEEEeCCCcHhHHHHHHHcCCe-EEEEEeec-CcCCc----CcHHHHHHHHHhCC
Confidence            99998877665543        5799999999998876544332221 11100000 01111    18999999986  3


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccc-ccCCCcce---eeecccc
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE-HYGIFPDI---MTLAKPL  317 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~-~~~~~pdi---~t~sK~l  317 (451)
                      ...+++++...++++| .+++.+.+++|.++|++||+++|+||+|.+|++.+.   ..... ..+..+++   .+|||.+
T Consensus       182 ~~~~~i~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  260 (409)
T 4eu1_A          182 EGSVILVHACAHNPTG-VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNF  260 (409)
T ss_dssp             TTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTS
T ss_pred             CCcEEEEECCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccc
Confidence            3455555443344555 467899999999999999999999999999876552   12222 22444554   3899999


Q ss_pred             c-CCcccccc---cccHH----HHhhccCCCccCCCCCcHHHHHHHHHHHHHhc--------ChHHHHH----------H
Q 013008          318 A-GGLPIGAA---LVTEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLAS----------K  371 (451)
Q Consensus       318 g-~G~~iG~v---~~~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--------~~~~~~~----------~  371 (451)
                      + .|+|+||+   +++++    +++.+.......+++.++++++++.++|+...        -+...++          .
T Consensus       261 g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  340 (409)
T 4eu1_A          261 GLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE  340 (409)
T ss_dssp             SCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 69999995   66777    55555433334556677888888888876310        0111111          1


Q ss_pred             HhCCC--C-cceecc-cceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          372 LARNP--H-VKDVRG-LGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       372 ~~~~~--~-~~~v~g-~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +++++  . +....+ .|++.++.+  . .+++..++ ++||++.|+     .|++++ .++++++++++++|++++
T Consensus       341 L~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~~~gv~v~p~-----~Ri~~~-~~~~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          341 LKACGSVHDWSHIERQVGMMAYTGL--T-REQVELLRSEYHIYMTLN-----GRAAVS-GLNSTNVEYVSQAIHNVT  408 (409)
T ss_dssp             HHHTTCCSCCHHHHHSCSSEEECCC--C-HHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcceecCCceEEEEeCC--C-HHHHHHHHHcCCEEEcCC-----CEEEEE-ecCHhhHHHHHHHHHHHh
Confidence            22222  1 222233 345555433  2 35566666 569999875     377765 457788999999998875

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.89  E-value=7.1e-22  Score=196.59  Aligned_cols=292  Identities=14%  Similarity=0.086  Sum_probs=198.7

Q ss_pred             CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008          116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS  195 (451)
Q Consensus       116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~  195 (451)
                      +|++.+++.+++++..+    .+.....++++.++++++.+.+++++||++|++.+++++.  .        .++++|++
T Consensus        19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~--~--------~~gd~Vl~   84 (393)
T 1mdo_A           19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG--I--------GEGDEVIT   84 (393)
T ss_dssp             CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred             CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcC--C--------CCCCEEEe
Confidence            48889999998876422    2456688999999999998899999999999999999762  1        15889999


Q ss_pred             EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHH
Q 013008          196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA  275 (451)
Q Consensus       196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l  275 (451)
                      .+++|++..... ...|.....   .+..++..   ..|+++|++++++ ++++|++++.   .|...+    +++|.++
T Consensus        85 ~~~~~~~~~~~~-~~~g~~~~~---v~~~~~~~---~~d~~~l~~~l~~-~~~~v~~~~~---~G~~~~----~~~i~~l  149 (393)
T 1mdo_A           85 PSMTWVSTLNMI-VLLGANPVM---VDVDRDTL---MVTPEHIEAAITP-QTKAIIPVHY---AGAPAD----LDAIYAL  149 (393)
T ss_dssp             ESSSCHHHHHHH-HHTTCEEEE---ECBCTTTC---CBCHHHHHHHCCT-TEEEECCBCG---GGCCCC----HHHHHHH
T ss_pred             CCCccHhHHHHH-HHCCCEEEE---EeccCCcC---CCCHHHHHHhcCC-CceEEEEeCC---CCCcCC----HHHHHHH
Confidence            999999865433 222221111   11111100   1289999999975 6788887763   344444    9999999


Q ss_pred             HHHhCCEEEEecccc-CCCcccccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccCCCc-c------
Q 013008          276 CDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYGDH-G------  342 (451)
Q Consensus       276 ~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~~~-~------  342 (451)
                      |++||+++|+||+|+ |+...+..     ++. +|++++|    |.+++| ++|+++++ +++++.+..... +      
T Consensus       150 ~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~  222 (393)
T 1mdo_A          150 GERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW  222 (393)
T ss_dssp             HHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred             HHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccch
Confidence            999999999999997 33233321     232 7887666    888765 78999886 788776532110 0      


Q ss_pred             -----------------CCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcce-------ecccceeE
Q 013008          343 -----------------STFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKD-------VRGLGLII  388 (451)
Q Consensus       343 -----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~-------v~g~G~~~  388 (451)
                                       ..+..+++.++++.+.++.++  ++.++          .++.++ +..       .++.+.++
T Consensus       223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~  299 (393)
T 1mdo_A          223 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLF  299 (393)
T ss_dssp             ---------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCE
T ss_pred             hhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEE
Confidence                             013357787777777666432  11111          233444 221       12345577


Q ss_pred             EEEec-----CChHHHHHHHHHCCceeeecCC------------------------CCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          389 GIEFD-----VSATPVVDACRDSGLLVLTAGK------------------------GNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       389 ~~~~~-----~~~~~~~~~l~~~Gv~~~~~~~------------------------~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                      ++.+.     .+..++.+.|.++||.+.++..                        ...+|+.+...+|++|+++++++|
T Consensus       300 ~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l  379 (393)
T 1mdo_A          300 IIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITAL  379 (393)
T ss_dssp             EEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             EEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHH
Confidence            88774     3677899999999998876431                        136999888889999999999999


Q ss_pred             HHHHHHH
Q 013008          440 CKTLPVL  446 (451)
Q Consensus       440 ~~~l~~~  446 (451)
                      +++++..
T Consensus       380 ~~~~~~~  386 (393)
T 1mdo_A          380 HQIAGQG  386 (393)
T ss_dssp             HHHHC--
T ss_pred             HHHHhcC
Confidence            9987643

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.89  E-value=2.5e-21  Score=195.07  Aligned_cols=303  Identities=17%  Similarity=0.125  Sum_probs=198.4

Q ss_pred             eeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC-CHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhh
Q 013008          102 DLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY-SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR  180 (451)
Q Consensus       102 D~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~  180 (451)
                      ||..+..  .++ .+|++.+++.++++...    +.. .....++++.++++++.+++++++||++|+..+++++.    
T Consensus        20 ~l~~~~p--~~~-~p~~~~~a~~~~~~~~~----y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~----   88 (424)
T 2po3_A           20 PLLVGRP--NRI-DRARLYERLDRALDSQW----LSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG----   88 (424)
T ss_dssp             CEETTCC--CCC-CHHHHHHHHHHHHHHTC----CSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT----
T ss_pred             cccccCC--CCC-ChHHHHHHHHHHHhcCC----cccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC----
Confidence            4544443  344 36789999998886531    122 46688999999999998999999999999999999764    


Q ss_pred             hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCC
Q 013008          181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG  259 (451)
Q Consensus       181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~  259 (451)
                              ++++|++.+++|++...... ..+.....   .+..+ +..    -|+++|++.+++ ++++|++.+   ++
T Consensus        89 --------~gd~Vlv~~~~~~~~~~~~~-~~G~~~~~---v~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~---~t  148 (424)
T 2po3_A           89 --------LTGEVIMPSMTFAATPHALR-WIGLTPVF---ADIDPDTGN----LDPDQVAAAVTP-RTSAVVGVH---LW  148 (424)
T ss_dssp             --------CCSEEEEESSSCTHHHHHHH-HTTCEEEE---ECBCTTTSS----BCHHHHGGGCCT-TEEEEEEEC---GG
T ss_pred             --------CCCEEEECCCccHHHHHHHH-HcCCEEEE---EecCCCcCC----cCHHHHHHhhCc-CCcEEEEEC---CC
Confidence                    36899999999998765332 22211111   11111 100    189999999975 577777643   34


Q ss_pred             CccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccccccccccCCCcceee--ec--ccccCCccccccccc-HHHH
Q 013008          260 GIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LA--KPLAGGLPIGAALVT-EKVA  333 (451)
Q Consensus       260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t--~s--K~lg~G~~iG~v~~~-~~i~  333 (451)
                      |...+    +++|.++|++||++||+||+|+ |+.+.|..     .+..+|+++  ||  |++++ +++|+++++ ++++
T Consensus       149 G~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~  218 (424)
T 2po3_A          149 GRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLA  218 (424)
T ss_dssp             GCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHH
T ss_pred             CCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHH
Confidence            54444    9999999999999999999998 66544432     122246664  44  77766 699999998 7887


Q ss_pred             hhccCC----C--------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------H---HhCCCCcceec-ccc-----
Q 013008          334 SAINYG----D--------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------K---LARNPHVKDVR-GLG-----  385 (451)
Q Consensus       334 ~~~~~~----~--------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~---~~~~~~~~~v~-g~G-----  385 (451)
                      +.+...    .        .+.++..+++.+++++..++.++.  +.++       +   ++.++.+..+. ..|     
T Consensus       219 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~--~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~  296 (424)
T 2po3_A          219 ARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPE--VIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNH  296 (424)
T ss_dssp             HHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCC
T ss_pred             HHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCCCccccCCCCCCcccc
Confidence            765421    0        011223456777776665554321  2221       2   23334333222 222     


Q ss_pred             eeEEEEec-----CChHHHHHHHHHCCceeeecCC-C----------------C-------EEEEeCCCCCCHHHHHHHH
Q 013008          386 LIIGIEFD-----VSATPVVDACRDSGLLVLTAGK-G----------------N-------VVRLVPPLIISEQELDQAV  436 (451)
Q Consensus       386 ~~~~~~~~-----~~~~~~~~~l~~~Gv~~~~~~~-~----------------~-------~iri~~~~~~t~e~i~~~l  436 (451)
                      .++.+.+.     .+..++.+.|.++||.+.+... .                +       .+|+.+...++++|+++++
T Consensus       297 ~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~  376 (424)
T 2po3_A          297 QYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVA  376 (424)
T ss_dssp             CCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHH
T ss_pred             EEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHH
Confidence            34446553     2577899999999999876211 0                1       1666656899999999999


Q ss_pred             HHHHHHHHHHh
Q 013008          437 EILCKTLPVLD  447 (451)
Q Consensus       437 ~~l~~~l~~~~  447 (451)
                      ++|.+++++.+
T Consensus       377 ~~L~~~~~~~~  387 (424)
T 2po3_A          377 DLLRLCATRGR  387 (424)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhhH
Confidence            99999887654

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.89  E-value=1e-22  Score=201.76  Aligned_cols=298  Identities=13%  Similarity=0.103  Sum_probs=191.6

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE  188 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~  188 (451)
                      .+|++.+++.+....  +. .........++.+++++.++      .+++++++||++|++.+++.+.....        
T Consensus        16 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~--------   84 (385)
T 2bkw_A           16 LSGAVQKALDVPSLG--HT-SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKA--------   84 (385)
T ss_dssp             CCHHHHHTTSCCCCC--TT-SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTC--------
T ss_pred             chHHHHHHHhccccc--cC-CHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCC--------
Confidence            467777776654322  11 00011124556677777664      37899999999999999997631001        


Q ss_pred             CCceEEEE-cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC------CCHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008          189 PATEFVSF-TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY------GNIEATRKLIQPGKTAAVFVEPIQGEGGI  261 (451)
Q Consensus       189 ~~~~ii~~-~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~aavi~ep~~~~~G~  261 (451)
                      ++++||++ .+.||..........+..            +..++.      .|+++|+++++++++++|+++++++++|.
T Consensus        85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~  152 (385)
T 2bkw_A           85 PNKNVLVVSTGTFSDRFADCLRSYGAQ------------VDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAV  152 (385)
T ss_dssp             SCCEEEEECSSHHHHHHHHHHHHTTCE------------EEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTE
T ss_pred             CCCeEEEEcCCcchHHHHHHHHHcCCc------------eEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCe
Confidence            57888888 556666532222222211            122222      28999999986435778888888888888


Q ss_pred             cccCHHHHHHHHHHHHHh--CCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHh-hc
Q 013008          262 YSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVAS-AI  336 (451)
Q Consensus       262 ~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~-~~  336 (451)
                      +.+    +++|.++|++|  |+++|+||+|+ +|..  .+....+  .+|++  +++|+++++.++|++++++++++ .+
T Consensus       153 ~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l  223 (385)
T 2bkw_A          153 LSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYAL  223 (385)
T ss_dssp             ECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHT
T ss_pred             EcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHH
Confidence            776    89999999999  99999999996 4322  1122222  35665  45799876555699999988776 44


Q ss_pred             cC----------------------CC--ccC-CCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HH-hCCCC
Q 013008          337 NY----------------------GD--HGS-TFAGSPLVCNAAIAVLDKISNP---AFLAS----------KL-ARNPH  377 (451)
Q Consensus       337 ~~----------------------~~--~~~-t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~-~~~~~  377 (451)
                      ..                      ..  ... .++.++.+++++.++++.+.+.   ...++          .+ +++. 
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-  302 (385)
T 2bkw_A          224 NDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQ-  302 (385)
T ss_dssp             CHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             hhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            20                      00  011 1346778888887888765322   11221          23 3332 


Q ss_pred             cceec------ccceeEEEEecCChHHHHHHHHHCCceeeecCC----CCEEEEe-CC---CCCCHHHHHHHHHHHHHHH
Q 013008          378 VKDVR------GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----GNVVRLV-PP---LIISEQELDQAVEILCKTL  443 (451)
Q Consensus       378 ~~~v~------g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~iri~-~~---~~~t~e~i~~~l~~l~~~l  443 (451)
                      +..+.      ..+.++++.+.. ..++.+.|.++||.+.++..    .+.+|++ ++   +.+++|++++++++|++++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~  381 (385)
T 2bkw_A          303 LTSVSRYPSNMSAHGLTAVYVAD-PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLAL  381 (385)
T ss_dssp             CEESSCSSSTTBCSSCEEEECSC-HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHT
T ss_pred             ceecccCcccccCCceEEEecCC-HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHH
Confidence            22222      246778887743 77899999999999987532    3679997 44   3579999999999999987


Q ss_pred             HHH
Q 013008          444 PVL  446 (451)
Q Consensus       444 ~~~  446 (451)
                      +++
T Consensus       382 ~~~  384 (385)
T 2bkw_A          382 QRK  384 (385)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            654

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.89  E-value=1.1e-22  Score=206.55  Aligned_cols=322  Identities=15%  Similarity=0.111  Sum_probs=189.8

Q ss_pred             EEeeccCcccccCCC--CCHHHHHHHHHHHhhcccccCCC-CCHHHHHHHHHHhhcc-C-------CCeEEe--cCCHHH
Q 013008          100 YLDLSSGIAVNALGH--GDADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVACS-F-------ADRVFF--SNTGTE  166 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-~-------~e~v~~--~~sG~e  166 (451)
                      .|||..|.+...-++  -.+.+.+++.+..++.......| +.....++.+.+++++ +       .++|++  |+||++
T Consensus        51 ~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~  130 (448)
T 3meb_A           51 KVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTG  130 (448)
T ss_dssp             CEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred             eEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHH
Confidence            577777765221222  12445554443331000111112 2222445556666554 4       368999  999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCCcCCCCcCC-CCC--eeEeeCCCHHHHHH
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSPFEPV-MPG--VNFVEYGNIEATRK  240 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~-~~~--~~~~~~~d~~~le~  240 (451)
                      |+..++.++..+.         ++++|++.+|+|+++......   ..+.....   .+. .++  ..    -|+++|++
T Consensus       131 al~l~~~~~~~~~---------~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~---~~~~~~~~~~~----~d~e~l~~  194 (448)
T 3meb_A          131 SLHIGFEFLHLWM---------PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKE---YTYLRKDGELE----IDFSNTKK  194 (448)
T ss_dssp             HHHHHHHHHHHHC---------TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEE---ECCBCTTSCSS----BCHHHHHH
T ss_pred             HHHHHHHHHHHhC---------CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEE---EeccccccCCC----cCHHHHHH
Confidence            9998765443332         588999999999887654430   22221111   111 111  11    18999999


Q ss_pred             hcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccccc-CCCcc---ee
Q 013008          241 LIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHEHY-GIFPD---IM  311 (451)
Q Consensus       241 ~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~~-~~~pd---i~  311 (451)
                      .++.  .+.+++++...++++|. .++.+.+++|.++|++||+++|+||+|.+|++.+.   .+....+ +..++   +.
T Consensus       195 ~l~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  273 (448)
T 3meb_A          195 DIQSAPEKSIFLFHACAHNPSGI-DFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQ  273 (448)
T ss_dssp             HHHHSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEE
T ss_pred             HHHhCCCCcEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEe
Confidence            9862  34555555544555554 57899999999999999999999999999876541   1222221 22344   45


Q ss_pred             eeccccc-CCcccccc--cc---------cH----HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHH-------
Q 013008          312 TLAKPLA-GGLPIGAA--LV---------TE----KVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAF-------  367 (451)
Q Consensus       312 t~sK~lg-~G~~iG~v--~~---------~~----~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~-------  367 (451)
                      ++||.++ .|+|+||+  ++         ++    ++++.+.......+.+.+.+++.++.++|+... ...|       
T Consensus       274 S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~  353 (448)
T 3meb_A          274 SFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEM  353 (448)
T ss_dssp             ECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             cccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            8999999 59999997  55         45    566555432334445567788887777764210 0011       


Q ss_pred             HHH----------HHhCC--CC------cceec-ccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCC
Q 013008          368 LAS----------KLARN--PH------VKDVR-GLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLII  427 (451)
Q Consensus       368 ~~~----------~~~~~--~~------~~~v~-g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~  427 (451)
                      .++          .++.+  +.      +.... ..|++.+..+   ..+++..|+ ++||++.|+.    .||++. .+
T Consensus       354 ~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gV~v~~G~----gRis~a-~~  425 (448)
T 3meb_A          354 SARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGL---TPEHVDYLKEKWSIYLVKAG----GRMSMC-GL  425 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCC---CHHHHHHHHHHHCEEECSGG----GEEEGG-GC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCC---CHHHHHHHHHhCCEEEeCCC----cEEEEe-cC
Confidence            111          12222  22      22222 3355555444   245666664 5799998853    288764 44


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q 013008          428 SEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       428 t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++++|++++++|.++++++
T Consensus       426 ~~~~i~~~~~~l~~~l~~~  444 (448)
T 3meb_A          426 TESNCDYVAEAIHDAVTKL  444 (448)
T ss_dssp             CTTTHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            7788999999999998753

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.89  E-value=1e-21  Score=201.83  Aligned_cols=310  Identities=8%  Similarity=-0.001  Sum_probs=196.0

Q ss_pred             CCHHHHHHHHHHHhhccc------ccCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 013008          115 GDADWIKAVVDQANVLTH------VSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAIKFARKFQRHSN  183 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~al~~a~~~~~~~~  183 (451)
                      .+..+.+++.+++++...      ....+....+.++++++.++.+     .++|++|+|+++|+..+++++...    +
T Consensus       102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~----g  177 (498)
T 3ihj_A          102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSG----G  177 (498)
T ss_dssp             SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCC----C
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCC----C
Confidence            356677777777775321      1111223447778888876653     689999999999999999966510    0


Q ss_pred             CCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-------CCHHHHHHhcCCC----CeEEEEE
Q 013008          184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------GNIEATRKLIQPG----KTAAVFV  252 (451)
Q Consensus       184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~----~~aavi~  252 (451)
                         .++++.|++.+|+|+.+.......+..             +..++.       -|+++|++++++.    ++++|++
T Consensus       178 ---d~~~d~Vlv~~p~y~~~~~~~~~~g~~-------------~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l  241 (498)
T 3ihj_A          178 ---GKSRTGVMIPIPQYPLYSAVISELDAI-------------QVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCI  241 (498)
T ss_dssp             ---GGGSEEEEEEESCCTHHHHHHHHTTCE-------------EEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEE
T ss_pred             ---CCCCCEEEEeCCCchhHHHHHHHcCCE-------------EEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEE
Confidence               001358999999998776444332211             111221       1899999998631    3666665


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--ccccccc--CC---------Ccceeeecccc-c
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHY--GI---------FPDIMTLAKPL-A  318 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~--~~---------~pdi~t~sK~l-g  318 (451)
                      ...++++|. +++.+.+++|+++|++||++||+||+|..+.+.+.  ...+...  +.         ..-+.+|||++ |
T Consensus       242 ~np~NPTG~-v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G  320 (498)
T 3ihj_A          242 INPGNPTGQ-VQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMG  320 (498)
T ss_dssp             ESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTC
T ss_pred             ECCCCCCCC-cCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEecccccccc
Confidence            544555554 67899999999999999999999999987644332  1111110  01         11234889999 4


Q ss_pred             -CCccccccc---ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----------hcC-hH----HHHH------HH
Q 013008          319 -GGLPIGAAL---VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----------ISN-PA----FLAS------KL  372 (451)
Q Consensus       319 -~G~~iG~v~---~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~----~~~~------~~  372 (451)
                       .|+|+||++   .++++++.+.... ....+.++++++++.++++.           ++. ..    +.++      .+
T Consensus       321 ~~G~R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L  399 (498)
T 3ihj_A          321 ECGYRGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLF  399 (498)
T ss_dssp             CSSSCCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             699999998   6889888875432 23455678888777666531           110 11    1111      33


Q ss_pred             hCCCCcceecccc-eeEEEEecC-------------ChHHH-HHH-HHHCCceeeecCC------CCEEEEeCCCCCCHH
Q 013008          373 ARNPHVKDVRGLG-LIIGIEFDV-------------SATPV-VDA-CRDSGLLVLTAGK------GNVVRLVPPLIISEQ  430 (451)
Q Consensus       373 ~~~~~~~~v~g~G-~~~~~~~~~-------------~~~~~-~~~-l~~~Gv~~~~~~~------~~~iri~~~~~~t~e  430 (451)
                      +++|.+....+.| +++++.++.             ....+ +.. |.++||.+.|+..      .+.+|+++  ..+++
T Consensus       400 ~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e  477 (498)
T 3ihj_A          400 NQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVE  477 (498)
T ss_dssp             HTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHH
T ss_pred             hcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHH
Confidence            4566565555554 455545531             22333 444 4568999988521      24788876  58999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 013008          431 ELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       431 ~i~~~l~~l~~~l~~~~~  448 (451)
                      ++++++++|.++++++.+
T Consensus       478 ~l~~~i~~L~~~~~~~~~  495 (498)
T 3ihj_A          478 KLKTVLQKVKDFHINFLE  495 (498)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999987653

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.89  E-value=1.3e-22  Score=210.39  Aligned_cols=328  Identities=12%  Similarity=0.027  Sum_probs=199.8

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHh-hcc-------CCCeEEecCCHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLV-ACS-------FADRVFFSNTGTEANEAA  171 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~-------~~e~v~~~~sG~eA~~~a  171 (451)
                      ++||..+.    .++.+|.+.+++.+++....+....+......++++.+. +..       ..++|++++|+++|+..+
T Consensus       106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~  181 (546)
T 2zy4_A          106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI  181 (546)
T ss_dssp             HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred             hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence            56665553    356778888888887753222222234455666666543 322       147899999999999999


Q ss_pred             HHHHH--HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          172 IKFAR--KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       172 l~~a~--~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ++++.  .+..        ++|.|++.+|+|+++...+.... +.....   .+..++..+.  .|+++|++++.. +++
T Consensus       182 ~~~l~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~---v~~~~~~~~~--~d~~~l~~~~~~-~~k  247 (546)
T 2zy4_A          182 FESLKLNGLLK--------AGDKVAIGMPVFTPYIEIPELAQYALEEVA---INADPSLNWQ--YPDSELDKLKDP-AIK  247 (546)
T ss_dssp             HHHHHHTTSSC--------TTCEEEEEESCCHHHHHHHHSTTSCCEEEE---EECBGGGTTB--CCHHHHGGGGST-TEE
T ss_pred             HHHhhhhhcCC--------CCCEEEEeCCCCccHHHHHHHcCCCcEEEE---EecCcccCCC--CCHHHHHHhhCC-CCe
Confidence            98742  1222        68999999999999875532211 111000   0111100000  278999988754 566


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHH--HHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCccccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDAC--DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGA  325 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~--~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~  325 (451)
                      +|+++..++++|. +.+.+.+++|.++|  ++||++||+||+|.+|............+....+.+|||.+| .|+|+||
T Consensus       248 ~v~l~~p~NPtG~-~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~  326 (546)
T 2zy4_A          248 IFFCVNPSNPPSV-KMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGV  326 (546)
T ss_dssp             EEEEESSCSSSCB-CCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEE
T ss_pred             EEEEECCCCCCCc-cCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEE
Confidence            6665555555564 67899999999999  889999999999998854222111111122334568999998 6999999


Q ss_pred             ccccHH-HHhhccCC------------------------------------CccCCCCCcHHHHHHHH-H-HHHHhc-Ch
Q 013008          326 ALVTEK-VASAINYG------------------------------------DHGSTFAGSPLVCNAAI-A-VLDKIS-NP  365 (451)
Q Consensus       326 v~~~~~-i~~~~~~~------------------------------------~~~~t~~~~~~~~aaa~-a-al~~~~-~~  365 (451)
                      ++++++ +++.+...                                    ....+.+.+.+.+.++. . ....++ .+
T Consensus       327 ~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~  406 (546)
T 2zy4_A          327 VAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEAD  406 (546)
T ss_dssp             EEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccH
Confidence            998875 66654210                                    01223455666665531 1 112222 23


Q ss_pred             HHHHH-----------HHhCCCC-cc-eecccceeEEEEecC------------------Ch-HHHHHHHHHCCceeeec
Q 013008          366 AFLAS-----------KLARNPH-VK-DVRGLGLIIGIEFDV------------------SA-TPVVDACRDSGLLVLTA  413 (451)
Q Consensus       366 ~~~~~-----------~~~~~~~-~~-~v~g~G~~~~~~~~~------------------~~-~~~~~~l~~~Gv~~~~~  413 (451)
                      .+.++           +.+.+.. +. .....|+++|+++..                  .. ..+.+.|.++||.+.|+
T Consensus       407 ~~~~~~r~~~~~r~~~l~~~L~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG  486 (546)
T 2zy4_A          407 EYKHTLKQLIRRRETTLYRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPG  486 (546)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTSSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEES
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCc
Confidence            33322           2222221 11 122346677887631                  12 23556677889999987


Q ss_pred             CC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          414 GK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       414 ~~----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ..    .+++|+++. ..+++++++++++|++++++..
T Consensus       487 ~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~  523 (546)
T 2zy4_A          487 RGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELY  523 (546)
T ss_dssp             SCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence            42    257999875 4589999999999999987754

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.89  E-value=8.9e-22  Score=197.80  Aligned_cols=315  Identities=16%  Similarity=0.138  Sum_probs=181.1

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHh-hcccccC---CC----CCHHHHHHH-HHHhhccCCCeE-EecCCHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVSN---MY----YSIPQIELA-KRLVACSFADRV-FFSNTGTEANE  169 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~---~~----~~~~~~~l~-~~l~~~~~~e~v-~~~~sG~eA~~  169 (451)
                      .+++.++..     +.||+|++|+.+++. .+..++.   .+    ..+...+++ +++++.++.+.+ ++++||++|++
T Consensus        34 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~  108 (425)
T 3ecd_A           34 QVELIASEN-----IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANG  108 (425)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred             ceeeecccC-----CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHH
Confidence            456655433     348999999999884 3221111   11    112345555 667777887766 45999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCCh-hhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCe
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT-MGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT  247 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  247 (451)
                      .+++++.           .+++.|++.+++||+.. ..... ..+.. +.....+..++..   ..|+++|++++...++
T Consensus       109 ~al~~~~-----------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~  173 (425)
T 3ecd_A          109 AVMLALA-----------KPGDTVLGMSLDAGGHLTHGAKPALSGKW-FNALQYGVSRDTM---LIDYDQVEALAQQHKP  173 (425)
T ss_dssp             HHHHHHC-----------CTTCEEEEECC-------------------CEEEEECCCTTTS---SCCHHHHHHHHHHHCC
T ss_pred             HHHHHcc-----------CCCCEEEEcccccccceecchhhhhcccc-eeeeecCCCcccC---ccCHHHHHHHHhhcCC
Confidence            9999764           26899999999998832 22111 11110 0000001111000   1289999999863356


Q ss_pred             EEEEEc-cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCccee--eecccccCCccc
Q 013008          248 AAVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPI  323 (451)
Q Consensus       248 aavi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~i  323 (451)
                      ++|+++ |+++   ...+    +++|+++|++||++||+||+| .|+.+.|.....  .. .+|++  ++||+++ |.++
T Consensus       174 ~~v~~~~~~~~---~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l~-g~~~  242 (425)
T 3ecd_A          174 SLIIAGFSAYP---RKLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTLR-GPRG  242 (425)
T ss_dssp             SEEEEECSCCC---SCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGGC-CCSC
T ss_pred             cEEEEccccCC---CcCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCcccC-CCCc
Confidence            777777 4543   2233    899999999999999999996 444344432211  11 15665  5679994 5688


Q ss_pred             cccccc-HHHHhhccCCCccC-CCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceec--ccce
Q 013008          324 GAALVT-EKVASAINYGDHGS-TFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVR--GLGL  386 (451)
Q Consensus       324 G~v~~~-~~i~~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~--g~G~  386 (451)
                      |+++++ +++.+.+......+ +.+.++..++++.+++.....+   ++.++          .++... +..+.  +.+.
T Consensus       243 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~  321 (425)
T 3ecd_A          243 GFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTGGTDNH  321 (425)
T ss_dssp             EEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS
T ss_pred             EEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccCCCCce
Confidence            999987 56777665322222 2233344444444444332222   22222          122222 22222  3567


Q ss_pred             eEEEEec---CChHHHHHHHHHCCceee----ecC-----CCCEEEEeCCC----CCCHHHHHHHHHHHHHHHHHH
Q 013008          387 IIGIEFD---VSATPVVDACRDSGLLVL----TAG-----KGNVVRLVPPL----IISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       387 ~~~~~~~---~~~~~~~~~l~~~Gv~~~----~~~-----~~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ++++.+.   .....+.+.|.++||.+.    |+.     ..+.+|+.++.    .++++++++++++|++++++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          322 LLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             EEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence            7788773   246678888888999998    331     12479998554    445999999999999999875

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.89  E-value=2.1e-22  Score=204.74  Aligned_cols=297  Identities=16%  Similarity=0.153  Sum_probs=196.7

Q ss_pred             CCCCHHHHHHHHHH----HhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008          113 GHGDADWIKAVVDQ----ANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE  188 (451)
Q Consensus       113 G~~~p~v~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~  188 (451)
                      |-.+|.|.+++...    .+...+.+.....+...+++++++++++.+.+++++||++|+..+++++.            
T Consensus       102 ~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~~~~------------  169 (464)
T 1ibj_A          102 DAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLIK------------  169 (464)
T ss_dssp             CCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTSC------------
T ss_pred             CCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhC------------
Confidence            33455666665432    12222323344566788999999999998899999999999988775221            


Q ss_pred             CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHH
Q 013008          189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEF  268 (451)
Q Consensus       189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~  268 (451)
                      ++++||+.++.||++........         ......+..++.+|+++|++++++ ++++|+++++++++|.+.+    
T Consensus       170 ~Gd~Vi~~~~~y~~~~~~~~~~~---------~~~G~~v~~v~~~d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~----  235 (464)
T 1ibj_A          170 NGEEIVAGDDVYGGSDRLLSQVV---------PRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQISD----  235 (464)
T ss_dssp             TTCEEEEESSCCHHHHHHHHHTS---------GGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCC----
T ss_pred             CCCEEEEECCCchhHHHHHHHHH---------HHcCCEEEEeCCCCHHHHHHHhcc-CceEEEEeCCCCCCCEeec----
Confidence            68999999999987642210000         011234566777899999999974 6899999999888888775    


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccC--Cccccccccc-HHHHhhccCCCccC
Q 013008          269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVT-EKVASAINYGDHGS  343 (451)
Q Consensus       269 l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~-~~i~~~~~~~~~~~  343 (451)
                      +++|+++|++||+++|+||+|.. |....  ..+ +  ..|++  +++|++++  |+++|+++++ +++++.+.......
T Consensus       236 l~~i~~la~~~gi~livDea~~~-g~~~~--~~~-~--~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~  309 (464)
T 1ibj_A          236 IRKISEMAHAQGALVLVDNSIMS-PVLSR--PLE-L--GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE  309 (464)
T ss_dssp             HHHHHHHHHTTTCEEEEECTTTC-TTTCC--GGG-T--TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCEEEEECCCcc-cccCC--hhh-c--CCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhc
Confidence            99999999999999999999963 21111  111 3  35665  68999986  7899999998 47877775332223


Q ss_pred             CCCCcHHHHHHHHHHHHHhcC--h---HHHHH---HHhC--------------CCCcce----ecccceeEEEEecC--C
Q 013008          344 TFAGSPLVCNAAIAVLDKISN--P---AFLAS---KLAR--------------NPHVKD----VRGLGLIIGIEFDV--S  395 (451)
Q Consensus       344 t~~~~~~~~aaa~aal~~~~~--~---~~~~~---~~~~--------------~~~~~~----v~g~G~~~~~~~~~--~  395 (451)
                      ..+.+++.+.++.++|+.+..  +   .+...   .+++              +|.+..    .++.|.++++++..  .
T Consensus       310 g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~  389 (464)
T 1ibj_A          310 GSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVAL  389 (464)
T ss_dssp             TCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHH
T ss_pred             CCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHH
Confidence            345578888888877653210  0   11111   2222              121111    12357788888842  1


Q ss_pred             hHHHHHHHHHCCceeeecC-------------------------C-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAG-------------------------K-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~-------------------------~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ...+.+.|...|+.+.++.                         . .+.+|+++..    |++++++++|++++++
T Consensus       390 ~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~  461 (464)
T 1ibj_A          390 SKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             HHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence            2346666655676665442                         1 2579998776    8999999999999864

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.89  E-value=6.9e-22  Score=197.42  Aligned_cols=318  Identities=13%  Similarity=0.090  Sum_probs=190.4

Q ss_pred             EEeeccCcccccCCCC--CHHHHHHHHHHHhh-cccccC--CCCCHHHHHHHHHHhhccC----CCeEEe--cCCHHHHH
Q 013008          100 YLDLSSGIAVNALGHG--DADWIKAVVDQANV-LTHVSN--MYYSIPQIELAKRLVACSF----ADRVFF--SNTGTEAN  168 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~~~~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~--~~sG~eA~  168 (451)
                      .|||..|.+....++.  .|.+.+++.+.+.. ....+.  .+..+.+.++++++.+..+    .++|++  |+||++|+
T Consensus        30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al  109 (401)
T 7aat_A           30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL  109 (401)
T ss_dssp             CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred             ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence            6888887763333432  35788888776653 111111  1122335566666655544    788877  99999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCeeEeeCCCHHHHHHhcC--C
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQ--P  244 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~--~  244 (451)
                      ..++++++.+++        ++++|++.+|+|+++.......+. ....   .+..  .+...    |++.+++.++  .
T Consensus       110 ~~~~~~l~~~~~--------~gd~Vlv~~p~~~~~~~~~~~~g~-~~~~---~~~~~~~~~~~----d~~~l~~~l~~~~  173 (401)
T 7aat_A          110 RVGANFLQRFFK--------FSRDVYLPKPSWGNHTPIFRDAGL-QLQA---YRYYDPKTCSL----DFTGAMEDISKIP  173 (401)
T ss_dssp             HHHHHHHHHHCT--------TCCEEEEEESCCTTHHHHHHHTTC-EEEE---EECEETTTTEE----CHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhcc--------CCCEEEEcCCCchhHHHHHHHcCC-eeEe---eeeeccccCcc----CHHHHHHHHHhCC
Confidence            999998776553        689999999999887644433221 1111   0110  01111    6787777765  2


Q ss_pred             CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccccc-CCCcc---eeeecccc
Q 013008          245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHEHY-GIFPD---IMTLAKPL  317 (451)
Q Consensus       245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~~-~~~pd---i~t~sK~l  317 (451)
                      .++++|++...++++|. .++.+.+++|.++|++||+++|+||+|.+|+..+.   ......+ +..++   +.++||.+
T Consensus       174 ~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~  252 (401)
T 7aat_A          174 EKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM  252 (401)
T ss_dssp             TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred             CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc
Confidence            45677777766666665 57999999999999999999999999998866542   1122111 22233   35899999


Q ss_pred             c-CCcccccccc---cHH----HHhhccCCCccCCCCCcHHHHHHHHHHHHH----------hcC--hHHHHH------H
Q 013008          318 A-GGLPIGAALV---TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDK----------ISN--PAFLAS------K  371 (451)
Q Consensus       318 g-~G~~iG~v~~---~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~----------~~~--~~~~~~------~  371 (451)
                      + .|+|+||+++   +++    +.+.+.......+.+.+.++++++..+++.          ++.  ..+.++      .
T Consensus       253 ~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  332 (401)
T 7aat_A          253 GLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN  332 (401)
T ss_dssp             CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 6899999775   565    333333222223344455665555544421          000  001110      1


Q ss_pred             HhCCC---Ccceecc-cceeEEEEecCChHHHHHHH-HHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          372 LARNP---HVKDVRG-LGLIIGIEFDVSATPVVDAC-RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       372 ~~~~~---~~~~v~g-~G~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ++++.   .+....+ .|++.++.+  ....+ ..+ .++||++.++     +|++++. +++++|++++++|++++
T Consensus       333 L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~ll~~~gi~v~~~-----~Ris~~~-~~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          333 LKKEGSSHNWQHITDQIGMFCFTGL--KPEQV-ERLTKEFSIYMTKD-----GRISVAG-VASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             HHHTTCCSCCHHHHHCCSSEEECCC--CHHHH-HHHHHHHCEECCTT-----CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCceecCCcceEEecCC--CHHHH-HHHHHhCCEeccCC-----CeEEecc-CChhhHHHHHHHHHHHh
Confidence            22221   2222233 355555443  33444 555 5679998754     5888764 45566999999999876

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.89  E-value=7.3e-21  Score=194.48  Aligned_cols=305  Identities=15%  Similarity=0.161  Sum_probs=198.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcccccCCCCC--------HHHHHHHHHHhhccCCCe-EEecCCHHHHHHHHHHHHHHHhhhc
Q 013008          112 LGHGDADWIKAVVDQANVLTHVSNMYYS--------IPQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHS  182 (451)
Q Consensus       112 lG~~~p~v~~a~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~~~e~-v~~~~sG~eA~~~al~~a~~~~~~~  182 (451)
                      .+|.+|++.+++.++..   .. +.+..        ....++++++++.++.+. +++++||++|+..++++++.+...+
T Consensus        75 ~~~~~p~v~~~~~~~~~---~~-~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~  150 (474)
T 1wyu_B           75 TMKYNPKLHEEAARLFA---DL-HPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDR  150 (474)
T ss_dssp             CCCCCCHHHHHHHHTTS---SC-CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCHHHHHHHHHHHH---hc-CCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhc
Confidence            44778998888877522   11 22221        336788889999888654 5578999999999999887653211


Q ss_pred             CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccC
Q 013008          183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQG  257 (451)
Q Consensus       183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~  257 (451)
                      +..  .++++||+.++. |+....+....|.            .++.++.+     |+++|++++.+ ++++|++++.+ 
T Consensus       151 Gd~--~~r~~Vlv~~~~-h~~~~~~~~~~G~------------~vv~v~~~~~~~~d~~~L~~~i~~-~t~~v~~~~pn-  213 (474)
T 1wyu_B          151 GEG--RTRRVVLVPDSA-HGSNPATASMAGY------------QVREIPSGPEGEVDLEALKRELGP-HVAALMLTNPN-  213 (474)
T ss_dssp             TCT--TTCCEEEEETTS-CTHHHHHHHHTTC------------EEEEECBCTTSSBCHHHHHHHCST-TEEEEEECSSC-
T ss_pred             CCc--cCCCEEEEeCCc-ChhhHHHHHHCCC------------EEEEecCCCCCCcCHHHHHHhhCC-CceEEEEECCC-
Confidence            100  024588888855 5665555444332            12233332     89999999974 57888888754 


Q ss_pred             CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccC-----CcccccccccH
Q 013008          258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG-----GLPIGAALVTE  330 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~-----G~~iG~v~~~~  330 (451)
                      +.|.+.   +.+++|+++|++||+++|+||+|..+ ..|.. ....++  +|++++  +|++++     |+++|++++++
T Consensus       214 ~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~  286 (474)
T 1wyu_B          214 TLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKA  286 (474)
T ss_dssp             TTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECG
T ss_pred             CCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcH
Confidence            466552   23999999999999999999999532 23321 122233  788766  798863     36999999999


Q ss_pred             HHHhhccCC-------------------CccCCCCCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCc
Q 013008          331 KVASAINYG-------------------DHGSTFAGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHV  378 (451)
Q Consensus       331 ~i~~~~~~~-------------------~~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~  378 (451)
                      ++++.+...                   ....++++|+++++++.+.++.+..+.+   .++          .+++. .+
T Consensus       287 ~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~  365 (474)
T 1wyu_B          287 HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GY  365 (474)
T ss_dssp             GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc
Confidence            988877510                   0113345788888888888875432222   111          12222 22


Q ss_pred             ceeccccee--EEEEe--cCChHHHHHHHHHCCceeeecC----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          379 KDVRGLGLI--IGIEF--DVSATPVVDACRDSGLLVLTAG----KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       379 ~~v~g~G~~--~~~~~--~~~~~~~~~~l~~~Gv~~~~~~----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..+.+.+.+  +++.+  .....++.+.|.++||.+....    ..+.+|++++..+|++++++++++|++++++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          366 RVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             BCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             EecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence            211222222  44444  2457889999999999863221    1367999998888999999999999988754

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.89  E-value=6.9e-22  Score=195.54  Aligned_cols=290  Identities=12%  Similarity=0.052  Sum_probs=189.3

Q ss_pred             cCCCCCHH----HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 013008          111 ALGHGDAD----WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDS  186 (451)
Q Consensus       111 ~lG~~~p~----v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~  186 (451)
                      .+++++|.    +.+++.+.+...    ..+..+...+++++++++++.+.+++++||++|++.+++.+.  .       
T Consensus         7 ~l~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~--~-------   73 (373)
T 3frk_A            7 SFKPMHDEIEYEIKFKFEEIYKRN----WFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYD--I-------   73 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHT----CCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTT--C-------
T ss_pred             CCCcccCCCCHHHHHHHHHHHHCC----CccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C-------
Confidence            35555554    445555544432    224456688999999999998899999999999999999762  1       


Q ss_pred             CCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC------CHHHHHHhcCCCCeEEEEEccccCCCC
Q 013008          187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG------NIEATRKLIQPGKTAAVFVEPIQGEGG  260 (451)
Q Consensus       187 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~aavi~ep~~~~~G  260 (451)
                       .++++|++.+++|++........ |..            +.+++.+      |+++|++++++ ++++|+  |. ++.|
T Consensus        74 -~~gd~Vi~~~~~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~--~~-n~~G  135 (373)
T 3frk_A           74 -GFGDEVIVPSNTFIATALAVSYT-GAK------------PIFVEPDIRTYNIDPSLIESAITE-KTKAII--AV-HLYG  135 (373)
T ss_dssp             -CTTCEEEEETTSCTHHHHHHHHH-SCE------------EEEECEETTTTEECGGGTGGGCCT-TEEEEE--EE-CCTT
T ss_pred             -CCcCEEEECCCCcHHHHHHHHHc-CCE------------EEEEeccccccCcCHHHHHHhcCC-CCeEEE--EE-CCCc
Confidence             15889999999998865443222 211            1122211      78899999875 677777  33 3556


Q ss_pred             ccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec----ccccC-Cccccccccc-HHHHh
Q 013008          261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALVT-EKVAS  334 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~~-~~i~~  334 (451)
                      ...+    +++|.++|++||++||+||+|+ +|..   +.....+..+|++++|    |.+++ |. .|+++++ +++.+
T Consensus       136 ~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~  206 (373)
T 3frk_A          136 QPAD----MDEIKRIAKKYNLKLIEDAAQA-HGSL---YKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAE  206 (373)
T ss_dssp             CCCC----HHHHHHHHHHHTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHH
T ss_pred             Cccc----HHHHHHHHHHcCCEEEEECCcc-cCCE---ECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHH
Confidence            6555    9999999999999999999996 2211   2223445557888777    99987 64 6777775 55655


Q ss_pred             hccCC------------CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------HH---hCCCCccee-c---ccce--
Q 013008          335 AINYG------------DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------KL---ARNPHVKDV-R---GLGL--  386 (451)
Q Consensus       335 ~~~~~------------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~~---~~~~~~~~v-~---g~G~--  386 (451)
                      .+...            ..+.++..+++.++++...++.++  .+.++       +.   +.++ +... .   ....  
T Consensus       207 ~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  283 (373)
T 3frk_A          207 KIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLD--KWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWY  283 (373)
T ss_dssp             HHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCS
T ss_pred             HHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeE
Confidence            54321            122355567888877777665432  22222       22   2333 2111 0   1111  


Q ss_pred             eEEEEecCChHHHHHHHHHCCceeeecCC-------------------C-------CEEEEeCCCCCCHHHHHHHHHHHH
Q 013008          387 IIGIEFDVSATPVVDACRDSGLLVLTAGK-------------------G-------NVVRLVPPLIISEQELDQAVEILC  440 (451)
Q Consensus       387 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------~-------~~iri~~~~~~t~e~i~~~l~~l~  440 (451)
                      .+.+.. .+..++.+.|.++||.+.+...                   +       ..+|+.+...+|++|++++++.|+
T Consensus       284 ~~~~~~-~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~  362 (373)
T 3frk_A          284 TFVIRS-EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKIN  362 (373)
T ss_dssp             SEEEEE-SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             EEEEEe-CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence            122222 3577899999999998874320                   0       469999999999999999999998


Q ss_pred             HHHH
Q 013008          441 KTLP  444 (451)
Q Consensus       441 ~~l~  444 (451)
                      ++..
T Consensus       363 ~~~~  366 (373)
T 3frk_A          363 AWKL  366 (373)
T ss_dssp             TCC-
T ss_pred             HHhh
Confidence            7654

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.89  E-value=1.8e-21  Score=193.54  Aligned_cols=299  Identities=17%  Similarity=0.161  Sum_probs=193.9

Q ss_pred             CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008          116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS  195 (451)
Q Consensus       116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~  195 (451)
                      .|++.+++.+++++...  ..+......+++++++++++.+..++++||++|++.+++.+.  .        .++++||+
T Consensus        16 ~~~~~~a~~~~l~~~~~--~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~--~--------~~gd~Vi~   83 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQW--WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG--V--------GPGTEVIV   83 (388)
T ss_dssp             CHHHHHHHHHHHHTSCC--BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred             CHHHHHHHHHHHHcCCe--eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEE
Confidence            38999999999876322  223445688999999999986666777788999999999762  1        15789999


Q ss_pred             EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHH
Q 013008          196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA  275 (451)
Q Consensus       196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l  275 (451)
                      .+++||+........+.... .   .+..++..   ..|+++|++++++ ++++|+  |++. .|.+.+    +++|.++
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~-~---v~~~~~~~---~~d~~~l~~~i~~-~~~~v~--~~n~-tG~~~~----l~~i~~l  148 (388)
T 1b9h_A           84 PAFTFISSSQAAQRLGAVTV-P---VDVDAATY---NLDPEAVAAAVTP-RTKVIM--PVHM-AGLMAD----MDALAKI  148 (388)
T ss_dssp             ESSSCTHHHHHHHHTTCEEE-E---ECBCTTTC---CBCHHHHHHHCCT-TEEEEC--CBCG-GGCCCC----HHHHHHH
T ss_pred             CCCccHHHHHHHHHcCCEEE-E---EecCCCcC---CCCHHHHHHhcCc-CceEEE--EeCC-ccCcCC----HHHHHHH
Confidence            99999988654332221111 0   11111100   0189999999964 566666  5554 465555    8999999


Q ss_pred             HHHhCCEEEEeccccC-CCcccccccccccCCCcceeeec--ccccCCcccccccccHH-H--HhhccC---CC------
Q 013008          276 CDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK-V--ASAINY---GD------  340 (451)
Q Consensus       276 ~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~-i--~~~~~~---~~------  340 (451)
                      |++||++||+||+|+. ....|..  ...++ ..++.+||  |++++| ++|+++++++ +  ++.+..   ..      
T Consensus       149 a~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (388)
T 1b9h_A          149 SADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDR  224 (388)
T ss_dssp             HHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCS
T ss_pred             HHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHhCCCCccCc
Confidence            9999999999999973 3222321  22223 34455666  666654 7899998865 6  554421   10      


Q ss_pred             ------ccCCCCCcHHHHHHHHHHHHHhcC--hHH------HHHHHhCCCCcceec-------ccceeEEEEecC----C
Q 013008          341 ------HGSTFAGSPLVCNAAIAVLDKISN--PAF------LASKLARNPHVKDVR-------GLGLIIGIEFDV----S  395 (451)
Q Consensus       341 ------~~~t~~~~~~~~aaa~aal~~~~~--~~~------~~~~~~~~~~~~~v~-------g~G~~~~~~~~~----~  395 (451)
                            .+.++..+++.++++.+.++.+++  +..      +.+.++.+|.+....       ..+.++++.+..    +
T Consensus       225 ~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (388)
T 1b9h_A          225 RYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEER  304 (388)
T ss_dssp             SCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHH
T ss_pred             cceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCccc
Confidence                  012233567777766666654322  111      111334455443221       236788888753    3


Q ss_pred             hHHHHHHHHHCCceeeecCCC--------------------------------CEEEEeCCCCC-CHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAGKG--------------------------------NVVRLVPPLII-SEQELDQAVEILCKT  442 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~~--------------------------------~~iri~~~~~~-t~e~i~~~l~~l~~~  442 (451)
                      ..++.+.|.++||.+.++..+                                ..+|+.+...+ |+||++++++.|+++
T Consensus       305 ~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~  384 (388)
T 1b9h_A          305 RNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADA  384 (388)
T ss_dssp             HHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence            567999999999998754211                                24888888888 999999999999998


Q ss_pred             HHH
Q 013008          443 LPV  445 (451)
Q Consensus       443 l~~  445 (451)
                      +++
T Consensus       385 ~~~  387 (388)
T 1b9h_A          385 VAR  387 (388)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            764

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.88  E-value=5.9e-22  Score=201.10  Aligned_cols=306  Identities=17%  Similarity=0.159  Sum_probs=186.7

Q ss_pred             CCHHHHHHHHHHHh-hcccccC----CCCCHH---HHHHH-HHHhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCC
Q 013008          115 GDADWIKAVVDQAN-VLTHVSN----MYYSIP---QIELA-KRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       115 ~~p~v~~a~~~~~~-~~~~~~~----~~~~~~---~~~l~-~~l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      .+|+|++|+.+++. .+..++.    ......   .++++ +++++.++.+.+.+ ++||++|++.++++++        
T Consensus        57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~--------  128 (447)
T 3h7f_A           57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALM--------  128 (447)
T ss_dssp             CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred             CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhc--------
Confidence            48999999998875 3322211    112222   25566 88999889877777 9999999999999765        


Q ss_pred             CCCCCCceEEEEcCCccCChhhhh--hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE-ccccCCCCc
Q 013008          185 DSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV-EPIQGEGGI  261 (451)
Q Consensus       185 ~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~-ep~~~~~G~  261 (451)
                         .++|+|++.+++|+++.....  ...+.. +.....+..++..   ..|+++|+++++..++++|++ .|++++++ 
T Consensus       129 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~-  200 (447)
T 3h7f_A          129 ---SPGERLLGLDLANGGHLTHGMRLNFSGKL-YENGFYGVDPATH---LIDMDAVRATALEFRPKVIIAGWSAYPRVL-  200 (447)
T ss_dssp             ---CTTCEEEEECGGGTCCGGGTCTTSHHHHS-SEEEEECCCTTTC---SCCHHHHHHHHHHHCCSEEEEECSSCCSCC-
T ss_pred             ---CCCCEEEecCcccccccchhhhhhhcCCe-eEEEEcCcCcccC---CcCHHHHHHHHHhcCCeEEEEcCCCCCCcc-
Confidence               268999999999987432211  111110 0000011111110   138999999985333456666 56665543 


Q ss_pred             cccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhccC
Q 013008          262 YSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY  338 (451)
Q Consensus       262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~  338 (451)
                            ++++|+++|++||++||+||+| .|+.+.|.....  .. ..|++  +++|+++ |+++|++++++++++.+..
T Consensus       201 ------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~-~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~  270 (447)
T 3h7f_A          201 ------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VP-HADVVSTTVHKTLG-GGRSGLIVGKQQYAKAINS  270 (447)
T ss_dssp             ------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TT-TCSEEEEESSGGGC-CCSCEEEEECGGGHHHHHH
T ss_pred             ------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CC-CCcEEEecCCcCCC-CCCeEEEEECHHHHHHHhh
Confidence                  3999999999999999999997 444333432111  11 23555  6789996 6788999999988887754


Q ss_pred             CCccCCCCCc-HHHHHHHHHHHHHhcChH---HHHH----------HHhCC----CCcceec--ccceeEEEEec---CC
Q 013008          339 GDHGSTFAGS-PLVCNAAIAVLDKISNPA---FLAS----------KLARN----PHVKDVR--GLGLIIGIEFD---VS  395 (451)
Q Consensus       339 ~~~~~t~~~~-~~~~aaa~aal~~~~~~~---~~~~----------~~~~~----~~~~~v~--g~G~~~~~~~~---~~  395 (451)
                      ....++++++ +..++++.+++..+..+.   +.++          .++..    +.+..+.  ..+.++++++.   ..
T Consensus       271 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  350 (447)
T 3h7f_A          271 AVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLD  350 (447)
T ss_dssp             HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCC
T ss_pred             hcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCC
Confidence            3333444433 333555555666544422   2221          12222    1122222  24556677763   23


Q ss_pred             hHHHHHHHHHCCceee----ecC-----CCCEEEEeCCCC----CCHHHHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVL----TAG-----KGNVVRLVPPLI----ISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~----~~~-----~~~~iri~~~~~----~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ...+.+.|.++||++.    |..     .++.+|+.++..    ++++++++++++|++++++.
T Consensus       351 ~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~  414 (447)
T 3h7f_A          351 GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG  414 (447)
T ss_dssp             HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence            4556666667799987    431     135689987654    68999999999999998654

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.88  E-value=8.6e-22  Score=195.22  Aligned_cols=304  Identities=10%  Similarity=0.025  Sum_probs=194.9

Q ss_pred             CC-EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHH
Q 013008           97 GR-EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAI  172 (451)
Q Consensus        97 G~-~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al  172 (451)
                      |. .++|+..+.+..   ..+|++++++.    .+.     .+...+.++++.++++++.   +++++++||++|+..++
T Consensus        26 g~~~v~~~~~~~~~~---~~~~~v~~a~~----~~~-----~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~   93 (374)
T 2aeu_A           26 GRDALYDLSGLSGGF---LIDEKDKALLN----TYI-----GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATI   93 (374)
T ss_dssp             CGGGCEECSSCCCCC---CCCHHHHHHHT----STT-----HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred             CccceeeecccCCCC---CCCHHHHHHHH----Hhc-----CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHH
Confidence            44 466766543211   25678888775    111     1122356777777777776   89999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhh--hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE-
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA--LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA-  249 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa-  249 (451)
                      +.+    .         +|+||+.+|+||++....  ....|            ..+..+  .|+++|+++ . .++++ 
T Consensus        94 ~~~----~---------gd~Vl~~~~~y~~~~~~~~~~~~~g------------~~~~~v--~d~~~l~~~-~-~~~~~~  144 (374)
T 2aeu_A           94 LAL----K---------PKKVIHYLPELPGHPSIERSCKIVN------------AKYFES--DKVGEILNK-I-DKDTLV  144 (374)
T ss_dssp             HHH----C---------CSEEEEECSSSSCCTHHHHHHHHTT------------CEEEEE--SCHHHHHTT-C-CTTEEE
T ss_pred             HhC----C---------CCEEEEecCCCCccHHHHHHHHHcC------------cEEEEe--CCHHHHHhc-C-CCccEE
Confidence            954    1         789999999999865321  11111            123333  589999988 5 46788 


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCccccccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAAL  327 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~  327 (451)
                      |+++++++++|.   +...+++|.++|++||+++|+||+|..+ ..+...........+|++  ++||.++| +++|+++
T Consensus       145 v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g-~~~G~~~  219 (374)
T 2aeu_A          145 IITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG-PRGGLLA  219 (374)
T ss_dssp             EEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS-CSCEEEE
T ss_pred             EEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC-cceEEEE
Confidence            888888777773   5566999999999999999999998543 211110000111235666  58999874 7999999


Q ss_pred             ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHH---HHH-----------HHhCCCC------cc-eecccce
Q 013008          328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF---LAS-----------KLARNPH------VK-DVRGLGL  386 (451)
Q Consensus       328 ~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~-----------~~~~~~~------~~-~v~g~G~  386 (451)
                      +++++++.+.........+.+++.++++.++|+.+..+.+   .++           +.+.++.      +. ..++.|.
T Consensus       220 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~  299 (374)
T 2aeu_A          220 GKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGF  299 (374)
T ss_dssp             EEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEE
T ss_pred             ECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceE
Confidence            9999998876432223345689999999999987532111   111           1121221      11 2345666


Q ss_pred             eEEEE-ecCCh------HHHHHHHH-HCCceeeecCC----CCEEEEeCCC-CCCHHHHHHHHHHHHHHHHHHh
Q 013008          387 IIGIE-FDVSA------TPVVDACR-DSGLLVLTAGK----GNVVRLVPPL-IISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       387 ~~~~~-~~~~~------~~~~~~l~-~~Gv~~~~~~~----~~~iri~~~~-~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++++. +. ..      .+++..++ ++||++.|+..    .+++||+++. ...+++++++++.|+++++++.
T Consensus       300 ~~~~~~~~-~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~  372 (374)
T 2aeu_A          300 VIKRVYKD-DTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF  372 (374)
T ss_dssp             EEEEEESS-HHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred             EEEeeccc-ccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            65553 21 11      12555554 67999987531    2579998763 3334458899999998888764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.88  E-value=1.1e-21  Score=196.94  Aligned_cols=304  Identities=17%  Similarity=0.151  Sum_probs=176.2

Q ss_pred             CCHHHHHHHHHHHhh-ccccc---C----CCCCHHHHHHH-HHHhhccCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 013008          115 GDADWIKAVVDQANV-LTHVS---N----MYYSIPQIELA-KRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~-~~~~~---~----~~~~~~~~~l~-~~l~~~~~~e~v-~~~~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      .||+|++|+.+++.+ +..++   .    ....+...+++ +++++.++.+.. +++++|++|++.+++++.        
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~--------  113 (420)
T 3gbx_A           42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL--------  113 (420)
T ss_dssp             CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred             CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhc--------
Confidence            699999999998843 21111   0    11122334433 677777775543 346788999999998664        


Q ss_pred             CCCCCCceEEEEcCCccCChhhhhh--ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc-cccCCCCc
Q 013008          185 DSKEPATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE-PIQGEGGI  261 (451)
Q Consensus       185 ~~~~~~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e-p~~~~~G~  261 (451)
                         .+++.|++.++.|++.......  ..+.......+ +...+    ...|+++|+++++++++++|+++ |+++   .
T Consensus       114 ---~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~----~~~d~~~l~~~i~~~~~~~v~~~~~~~~---~  182 (420)
T 3gbx_A          114 ---QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPY-GIDES----GKIDYDEMAKLAKEHKPKMIIGGFSAYS---G  182 (420)
T ss_dssp             ---CTTCEEEEEEEC------------CHHHHSEEEEE-EECTT----CSCCHHHHHHHHHHHCCSEEEECCTTCC---S
T ss_pred             ---CCCCEEEecchhhcceeccchhhhhcccceeEEec-cCCcc----CCcCHHHHHHHHHhcCCeEEEEecCccC---C
Confidence               2688999999888663311111  11100000000 00000    01489999999975446777774 4443   2


Q ss_pred             cccCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccccccccccCCCcceee--ecccccCCcccccccccH---HHHhh
Q 013008          262 YSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTE---KVASA  335 (451)
Q Consensus       262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~---~i~~~  335 (451)
                      ..+    +++|+++|++||++||+||+|. |+.+.|.....  .. .+|+++  +||+++ |.+.|++++++   ++++.
T Consensus       183 ~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~  254 (420)
T 3gbx_A          183 VVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEELYKK  254 (420)
T ss_dssp             CCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHHHHHH
T ss_pred             ccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHHHHHH
Confidence            344    9999999999999999999974 44333432111  11 278876  679997 44569998887   78777


Q ss_pred             ccCCCccCCCCCc-HHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCcceec--ccceeEEEEec---CCh
Q 013008          336 INYGDHGSTFAGS-PLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKDVR--GLGLIIGIEFD---VSA  396 (451)
Q Consensus       336 ~~~~~~~~t~~~~-~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~v~--g~G~~~~~~~~---~~~  396 (451)
                      +......++++.+ ...++++.+++.....+.+   .++          .++.. .+..+.  ..+.++++.+.   ...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  333 (420)
T 3gbx_A          255 LNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKNLTG  333 (420)
T ss_dssp             HHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCH
T ss_pred             hhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCCCCH
Confidence            6543333333333 3333343434443322222   222          11222 222233  35667787773   246


Q ss_pred             HHHHHHHHHCCceeee-------cCC--CCEEEEeCCCC----CCHHHHHHHHHHHHHHHHHH
Q 013008          397 TPVVDACRDSGLLVLT-------AGK--GNVVRLVPPLI----ISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~-------~~~--~~~iri~~~~~----~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..+.+.|.++||++.+       +..  ++.+|++++..    ++++++++++++|++++++.
T Consensus       334 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          334 KEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI  396 (420)
T ss_dssp             HHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence            6778888889999987       211  24599988755    56899999999999988653

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.88  E-value=1.9e-21  Score=196.49  Aligned_cols=280  Identities=16%  Similarity=0.159  Sum_probs=188.3

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+..+.++...+++++|+++++.+..++++||++|+..+++.+.           .++++||+.++.|++.........
T Consensus       106 ~~y~r~~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~~  174 (445)
T 1qgn_A          106 FEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALV-----------PAGGHIVTTTDCYRKTRIFIETIL  174 (445)
T ss_dssp             CCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS-----------CSSCEEEEETTSCHHHHHHHHHTG
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEcCCCchhHHHHHHHHH
Confidence            334445677789999999999987788888899999999999654           158899999999987542211000


Q ss_pred             CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                               ......+.+++.+|+++|+++++++.+++|++|++++++|.+.+    +++|.++|++||+++|+||+|+.
T Consensus       175 ---------~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~  241 (445)
T 1qgn_A          175 ---------PKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT  241 (445)
T ss_dssp             ---------GGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC
T ss_pred             ---------HHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcc
Confidence                     01123456777789999999997544489999999888888776    99999999999999999999963


Q ss_pred             CCcccccccccccCCCcceee--ecccccC-C-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h
Q 013008          292 LGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P  365 (451)
Q Consensus       292 ~gr~G~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~  365 (451)
                      . ...     ......+|+++  ++|.+++ | .++|++++++++++.+...........+|+.+.++...++.+..  +
T Consensus       242 ~-~~~-----~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~  315 (445)
T 1qgn_A          242 P-LNQ-----KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQ  315 (445)
T ss_dssp             T-TTC-----CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHH
T ss_pred             c-ccC-----CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHHHHHH
Confidence            2 111     12344578775  7899986 4 57999999999888775322211223467776666666654321  1


Q ss_pred             HHHHH------HHhCCCCccee------------------cccceeEEEEecCC---hHHHHHHHHHCCceeeec-----
Q 013008          366 AFLAS------KLARNPHVKDV------------------RGLGLIIGIEFDVS---ATPVVDACRDSGLLVLTA-----  413 (451)
Q Consensus       366 ~~~~~------~~~~~~~~~~v------------------~g~G~~~~~~~~~~---~~~~~~~l~~~Gv~~~~~-----  413 (451)
                      ...++      .++.+|.+..+                  ++.|.+++|.+...   ...+.+.|...++.+..+     
T Consensus       316 ~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl  395 (445)
T 1qgn_A          316 QQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESI  395 (445)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCE
T ss_pred             HHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCcee
Confidence            11111      44555543221                  34688999998533   334444443223322111     


Q ss_pred             --------------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          414 --------------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       414 --------------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                                          + ..+.+|+++.    .||++++++.|+++++.
T Consensus       396 ~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          396 VDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS  444 (445)
T ss_dssp             EECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred             eecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence                                1 1267999766    46899999999998864

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.88  E-value=1.9e-21  Score=192.07  Aligned_cols=293  Identities=15%  Similarity=0.109  Sum_probs=189.2

Q ss_pred             CCCCCHH----HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008          112 LGHGDAD----WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK  187 (451)
Q Consensus       112 lG~~~p~----v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~  187 (451)
                      +++++|.    +.+++.+++...    ..+..+...+++++++++++.+++++++||++|++.+++.+..          
T Consensus         7 ~~~~~~~~~~~v~~a~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~----------   72 (367)
T 3nyt_A            7 LKNQQARIKDKIDAGIQRVLRHG----QYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGV----------   72 (367)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHC----CCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTC----------
T ss_pred             ccccccccCHHHHHHHHHHHhcC----CccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCC----------
Confidence            5555544    445555544432    2235566889999999999988999999999999999997631          


Q ss_pred             CCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHH
Q 013008          188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      .++++|++..++|++........+....+    .+..++..   .-|+++|++++.+ ++++|+.++   ..|...+   
T Consensus        73 ~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~----~~~~~~~~---~~d~~~l~~~i~~-~~~~v~~~~---~~G~~~~---  138 (367)
T 3nyt_A           73 GPGDEVITPGFTYVATAETVALLGAKPVY----VDIDPRTY---NLDPQLLEAAITP-RTKAIIPVS---LYGQCAD---  138 (367)
T ss_dssp             CTTCEEEEESSSCTHHHHHHHHTTCEEEE----ECBCTTTC---SBCGGGTGGGCCT-TEEEECCBC---GGGCCCC---
T ss_pred             CCcCEEEECCCccHHHHHHHHHcCCEEEE----EecCCccC---CcCHHHHHHhcCc-CCcEEEeeC---CccChhh---
Confidence            15889999999998866544333221111    11111100   0178899999864 678887443   3344444   


Q ss_pred             HHHHHHHHHHHhCCEEEEecccc-CCCcccccccccccCCCcceeeec----ccccC-Ccccccccc-cHHHHhhccCCC
Q 013008          268 FLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALV-TEKVASAINYGD  340 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~-~~~i~~~~~~~~  340 (451)
                       +++|.++|++||++||+||+|+ |..+.|.     ..+...|++++|    |.+++ |. .|+++. ++++++.+....
T Consensus       139 -~~~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~  211 (367)
T 3nyt_A          139 -FDAINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIA  211 (367)
T ss_dssp             -HHHHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHH
Confidence             9999999999999999999996 2322222     122223888776    99987 76 788777 477776654311


Q ss_pred             ------------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCc-ceec----ccceeEEEEec
Q 013008          341 ------------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHV-KDVR----GLGLIIGIEFD  393 (451)
Q Consensus       341 ------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~-~~v~----g~G~~~~~~~~  393 (451)
                                  .+.++..+++.++++++.++.++.  +.++          .++..+.. ....    .....+.+.+.
T Consensus       212 ~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (367)
T 3nyt_A          212 RHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEE--EIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD  289 (367)
T ss_dssp             BTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS
T ss_pred             hcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC
Confidence                        135677899999999888875422  2111          22223211 0011    11122333333


Q ss_pred             CChHHHHHHHHHCCceeeecCC-----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          394 VSATPVVDACRDSGLLVLTAGK-----------------------GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       394 ~~~~~~~~~l~~~Gv~~~~~~~-----------------------~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                       +...+.+.|.++||.+.+...                       ...+|+.+....|++|++++++.|++.
T Consensus       290 -~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          290 -NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             -SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             -CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence             577899999999998764321                       135888888899999999999998753

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.87  E-value=1.3e-21  Score=194.91  Aligned_cols=285  Identities=15%  Similarity=0.157  Sum_probs=189.8

Q ss_pred             CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008          116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS  195 (451)
Q Consensus       116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~  195 (451)
                      +|++.+++.+.+....+  . .......++++.++++++.+.+++++||++|++.+++.+.  .        .++++|++
T Consensus        35 ~~~~~~a~~~~~~~~~~--~-~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~--~--------~~gd~vl~  101 (391)
T 3dr4_A           35 DGNERDYVLECMDTTWI--S-SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMG--I--------GPGDEVIV  101 (391)
T ss_dssp             CSSHHHHHHHHHHHTCC--S-SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHT--C--------CTTCEEEE
T ss_pred             CHHHHHHHHHHHHcCCc--c-CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEE
Confidence            36788888887765321  1 2456788999999999998899999999999999999772  1        15889999


Q ss_pred             EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC------CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHH
Q 013008          196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG------NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL  269 (451)
Q Consensus       196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l  269 (451)
                      .+++|++........+..             +.+++.+      |+++|++++++ ++++|+++   ++.|...+    +
T Consensus       102 ~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~---n~tG~~~~----~  160 (391)
T 3dr4_A          102 PSLTYIASANSVTYCGAT-------------PVLVDNDPRTFNLDAAKLEALITP-RTKAIMPV---HLYGQICD----M  160 (391)
T ss_dssp             ESSSCTHHHHHHHHTTCE-------------EEEECBCTTTCSBCGGGSGGGCCT-TEEEECCB---CGGGCCCC----H
T ss_pred             CCCchHHHHHHHHHCCCE-------------EEEEecCccccCcCHHHHHHhcCC-CceEEEEE---CCCCChhh----H
Confidence            999999876544332221             1122221      78899998864 67777743   24465555    9


Q ss_pred             HHHHHHHHHhCCEEEEeccccC-CCcccccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccCC----
Q 013008          270 QFLRDACDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG----  339 (451)
Q Consensus       270 ~~l~~l~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~----  339 (451)
                      ++|+++|++||++||+||+|+. ....+     ...+..+|++++|    |++++| ++|+++.+ +++.+.+...    
T Consensus       161 ~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g  234 (391)
T 3dr4_A          161 DPILEVARRHNLLVIEDAAEAVGATYRG-----KKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQG  234 (391)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTT
T ss_pred             HHHHHHHHHcCCEEEEECcccccceECC-----eeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcC
Confidence            9999999999999999999962 21111     1233345777766    999764 57787765 5566554321    


Q ss_pred             ----------CccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCccee--------cccceeEEEE
Q 013008          340 ----------DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDV--------RGLGLIIGIE  391 (451)
Q Consensus       340 ----------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v--------~g~G~~~~~~  391 (451)
                                ..+..+..+++.+++++..++.++  ++.++          .++... +...        ...+.++++.
T Consensus       235 ~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~i~  311 (391)
T 3dr4_A          235 MDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVD--EHLAARERVVGWYEQKLARLG-NRVTKPHVALTGRHVFWMYTVR  311 (391)
T ss_dssp             CCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHGGGT-TSEECCCCCTTSCCCCSSEEEE
T ss_pred             CCCCCcccccccccccCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCC-ccccCcCCCCCCcceeEEEEEE
Confidence                      112235567777777666655432  12211          222221 1111        1223345666


Q ss_pred             ecC----ChHHHHHHHHHCCceeeecCC-----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          392 FDV----SATPVVDACRDSGLLVLTAGK-----------------------GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       392 ~~~----~~~~~~~~l~~~Gv~~~~~~~-----------------------~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +..    ...++.+.|.++||.+.++..                       ...+|+.+...+|+|||++++++|++++
T Consensus       312 ~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          312 LGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             ECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             ECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            632    478899999999999986530                       1468999999999999999999998754

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.87  E-value=1.9e-21  Score=194.06  Aligned_cols=276  Identities=16%  Similarity=0.133  Sum_probs=184.6

Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +..+..+...+++++++++++.+.+++++||++|+..+++ +.           .++++||+.++.||+........   
T Consensus        49 ~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~-----------~~gd~Vi~~~~~y~~~~~~~~~~---  113 (393)
T 1n8p_A           49 YSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SL-----------PQGSHAVSIGDVYGGTHRYFTKV---  113 (393)
T ss_dssp             BTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TS-----------CSSCEEEEESSCCHHHHHHHHHT---
T ss_pred             eecCCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-Hc-----------CCCCEEEEeCCCchHHHHHHHHH---
Confidence            3445666788999999999987788888999999999998 43           15889999999998753221000   


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHh----CCEEEEeccc
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA----GALLVFDEVQ  289 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~----g~llI~DEv~  289 (451)
                            .......+.+++.+| ++|++++++ ++++|+++++++++|.+.+    +++|.++|++|    |+++|+||+|
T Consensus       114 ------~~~~G~~v~~v~~~d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~  181 (393)
T 1n8p_A          114 ------ANAHGVETSFTNDLL-NDLPQLIKE-NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTF  181 (393)
T ss_dssp             ------STTTCSCCEEESSHH-HHHHHHSCS-SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTT
T ss_pred             ------HHHcCcEEEEeCCCh-HHHHHhccc-CceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCc
Confidence                  011123456677778 999999974 6889999999999998776    99999999999    9999999999


Q ss_pred             cCCCcccccccccccCCCccee--eecccccC-Cccc-cccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC
Q 013008          290 CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN  364 (451)
Q Consensus       290 tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~  364 (451)
                      +.+.+ ....   .++  +|++  +++|.+++ |+++ |+++++ +++++.+...........++..++++.++++.+..
T Consensus       182 ~~~~~-~~~~---~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~  255 (393)
T 1n8p_A          182 LSPYI-SNPL---NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHL  255 (393)
T ss_dssp             THHHH-CCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH
T ss_pred             ccccc-CCHH---HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHH
Confidence            86533 2221   223  5665  78899996 7888 888884 78888775432212233467777777666654311


Q ss_pred             --hHHHHH------HHhCCCC-ccee------------------cc-c-ceeEEEEecCC---hHHHHHHHHHCCceee-
Q 013008          365 --PAFLAS------KLARNPH-VKDV------------------RG-L-GLIIGIEFDVS---ATPVVDACRDSGLLVL-  411 (451)
Q Consensus       365 --~~~~~~------~~~~~~~-~~~v------------------~g-~-G~~~~~~~~~~---~~~~~~~l~~~Gv~~~-  411 (451)
                        +...++      .+++++. +..+                  ++ . |.+++|.+...   ...+...|...++.+. 
T Consensus       256 ~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~  335 (393)
T 1n8p_A          256 RVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESL  335 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCC
Confidence              111111      3344443 2221                  23 5 77889988532   3334444322232221 


Q ss_pred             ---------e---c------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          412 ---------T---A------------G-KGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       412 ---------~---~------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                               |   .            + ..+.+|+++....++++++.+.++|+++
T Consensus       336 G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          336 GGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             CCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence                     1   0            1 1268999999999999988888888754

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.87  E-value=1.1e-20  Score=189.49  Aligned_cols=310  Identities=15%  Similarity=0.084  Sum_probs=183.5

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhh-cccccC----CCCCHHHH----HHHHHHhhccCCCeE-EecCCHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHVSN----MYYSIPQI----ELAKRLVACSFADRV-FFSNTGTEANE  169 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~----~~~~~~~~----~l~~~l~~~~~~e~v-~~~~sG~eA~~  169 (451)
                      .+++.++..     +.+|+|++|+.+++.+ +..++.    ........    .+.+++++.++.+.. +++++|++|++
T Consensus        27 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~  101 (417)
T 3n0l_A           27 GLEMIASEN-----FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQ  101 (417)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred             CeeeecccC-----CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHH
Confidence            455555433     3589999999988843 322111    11223233    344477887775543 55677899999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh--ccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhc
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLI  242 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l  242 (451)
                      .+++++.           .++|+|++.+++|++.......  ..+..          .....++.     .|+++|++++
T Consensus       102 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~d~~~l~~~i  160 (417)
T 3n0l_A          102 GVYAALI-----------NPGDKILGMDLSHGGHLTHGAKVSSSGKM----------YESCFYGVELDGRIDYEKVREIA  160 (417)
T ss_dssp             HHHHHHS-----------CTTCEEEEECC----------------CC----------SEEEEECCCTTSSCCHHHHHHHH
T ss_pred             HHHHHhc-----------CCCCEEEecccccccccchhhhhhhhcce----------eeeEeccCCCCCCcCHHHHHHHH
Confidence            9999764           2689999999999875431111  11100          00111111     3899999999


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccccccccccCCCcceeeec--ccccC
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAG  319 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t~s--K~lg~  319 (451)
                      +..++++|++.+.+  .|...+    +++|+++|++||++||+||+|. |+...|....  ... ..|++++|  |++ +
T Consensus       161 ~~~~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l-~  230 (417)
T 3n0l_A          161 KKEKPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-YAHVVSSTTHKTL-R  230 (417)
T ss_dssp             HHHCCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-TCSEEEEESSTTT-C
T ss_pred             HhcCCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-cceEEEeeCcccc-C
Confidence            73356677765433  355555    9999999999999999999973 3212221110  001 24777554  999 4


Q ss_pred             Cccccccccc-HHHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcChH---HHHH----------HHhCCCCcceec--
Q 013008          320 GLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPA---FLAS----------KLARNPHVKDVR--  382 (451)
Q Consensus       320 G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~----------~~~~~~~~~~v~--  382 (451)
                      |+++|+++++ +++++.+.... +..+.+.++..++++.+++.....+.   +.++          .++.. .+..+.  
T Consensus       231 g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  309 (417)
T 3n0l_A          231 GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDG  309 (417)
T ss_dssp             SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS
T ss_pred             CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCC
Confidence            5678999998 78888775432 22233445666666666666533222   2211          12222 222222  


Q ss_pred             ccceeEEEEec---CChHHHHHHHHHCCceeeecCC---------CCEEEEeCCC----CCCHHHHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFD---VSATPVVDACRDSGLLVLTAGK---------GNVVRLVPPL----IISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       383 g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~~---------~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..+.++++.+.   .....+.+.|.++||.+.+...         .+.+|+.++.    .++++++++++++|++++++.
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~  389 (417)
T 3n0l_A          310 TDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV  389 (417)
T ss_dssp             CSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence            23456777773   2567788888889999875421         2458887653    367999999999999998653

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.87  E-value=1.8e-20  Score=188.31  Aligned_cols=303  Identities=11%  Similarity=0.042  Sum_probs=192.8

Q ss_pred             CCHHHHHHHHHHHhhcccc---cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHV---SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      -+|++.+++.+++++....   ...+......+++++++++++.+.+++++||++|+..+++++.  .        .+++
T Consensus        14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~--~--------~~gd   83 (418)
T 2c81_A           14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALG--I--------GEGD   83 (418)
T ss_dssp             CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT--C--------CTTC
T ss_pred             CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCcC
Confidence            3689999999998774322   1112233478999999999997788999999999999999762  1        1578


Q ss_pred             eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008          192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      +||+.+++|++........+.... .   .+..+ +..    -|+++|++++++ ++++|++++   +.|...+    ++
T Consensus        84 ~Vl~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~---~~G~~~~----~~  147 (418)
T 2c81_A           84 EVIVPSLTWIATATAVLNVNALPV-F---VDVEADTYC----IDPQLIKSAITD-KTKAIIPVH---LFGSMAN----MD  147 (418)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEE-E---ECBCTTTCS----BCHHHHGGGCCT-TEEEECCBC---CTTCCCC----HH
T ss_pred             EEEECCCccHhHHHHHHHcCCEEE-E---EecCCCCCC----cCHHHHHHhhCC-CCeEEEEeC---CcCCccc----HH
Confidence            999999999988654432221111 0   01111 000    189999999975 577777654   3455444    99


Q ss_pred             HHHHHHHHhCCEEEEeccccCCC-cccccccccccCCCcceeee--cccccCCccccccccc-HHHHhhccC---CC---
Q 013008          271 FLRDACDDAGALLVFDEVQCGLG-RTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT-EKVASAINY---GD---  340 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~g-r~G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~-~~i~~~~~~---~~---  340 (451)
                      +|.++|++||++||+||+|+.+. ..+...  ..++ ..++.+|  +|.+++| ++|+++++ +++++.+..   ..   
T Consensus       148 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~  223 (418)
T 2c81_A          148 EINEIAQEHNLFVIEDCAQSHGSVWNNQRA--GTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVY  223 (418)
T ss_dssp             HHHHHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEE
T ss_pred             HHHHHHHHCCCEEEEECcccccCccCCEec--cccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccc
Confidence            99999999999999999998664 223211  1111 2344566  8999887 99999984 777665532   10   


Q ss_pred             ----------cc------CCC----CCcHHHHHHHHHHHHHhcC-----hHHHH---HHHhCCCCccee-cccc----e-
Q 013008          341 ----------HG------STF----AGSPLVCNAAIAVLDKISN-----PAFLA---SKLARNPHVKDV-RGLG----L-  386 (451)
Q Consensus       341 ----------~~------~t~----~~~~~~~aaa~aal~~~~~-----~~~~~---~~~~~~~~~~~v-~g~G----~-  386 (451)
                                ..      ...    ..+++.++.+...++.++.     ....+   +.++.+|.+... ...+    . 
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~  303 (418)
T 2c81_A          224 CDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTY  303 (418)
T ss_dssp             CSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCC
T ss_pred             cccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCccccc
Confidence                      00      001    1244444443333332211     01111   133445444332 2233    2 


Q ss_pred             -eEEEEec------CChHHHHHHHHHC-Cce---eeecCC---------------------------------------C
Q 013008          387 -IIGIEFD------VSATPVVDACRDS-GLL---VLTAGK---------------------------------------G  416 (451)
Q Consensus       387 -~~~~~~~------~~~~~~~~~l~~~-Gv~---~~~~~~---------------------------------------~  416 (451)
                       ++.+.+.      .+..++.+.|.++ ||.   +.++..                                       .
T Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (418)
T 2c81_A          304 YGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASG  383 (418)
T ss_dssp             SEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHH
T ss_pred             EEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHh
Confidence             2335553      2577899999999 999   765310                                       0


Q ss_pred             CEEEEeCCCCC-CHHHHHHHHHHHHHHHHHHh
Q 013008          417 NVVRLVPPLII-SEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       417 ~~iri~~~~~~-t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +.+|+.++..+ |+||+++++++|++++++++
T Consensus       384 ~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~  415 (418)
T 2c81_A          384 QSIVIHHAILLAEPSHLSLLVDAVAELARKFC  415 (418)
T ss_dssp             HEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred             CEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence            37999999999 99999999999999987654

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.87  E-value=8.3e-21  Score=189.97  Aligned_cols=276  Identities=16%  Similarity=0.151  Sum_probs=185.5

Q ss_pred             CCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008          135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE  214 (451)
Q Consensus       135 ~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~  214 (451)
                      ..+.++...+|+++++++++.+..++++||++|+..+++ +.           .++++||+.++.||+.........   
T Consensus        62 ~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~-----------~~gd~Vl~~~~~y~~~~~~~~~~~---  126 (403)
T 3cog_A           62 SRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LL-----------KAGDQIICMDDVYGGTNRYFRQVA---  126 (403)
T ss_dssp             ----CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TS-----------CTTCEEEEESSCCHHHHHHHHHTG---
T ss_pred             cCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-Hh-----------CCCCEEEEeCCCcchHHHHHHHHH---
Confidence            445667788999999999986677777789999999988 43           158899999999987543211110   


Q ss_pred             CcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC-CEEEEeccccCCC
Q 013008          215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG-ALLVFDEVQCGLG  293 (451)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g-~llI~DEv~tg~g  293 (451)
                            ......+.+++.+|+++|++++++ ++++|+++++++++|.+.+    +++|.++|++|| +++|+||+|+++.
T Consensus       127 ------~~~G~~v~~v~~~d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~  195 (403)
T 3cog_A          127 ------SEFGLKISFVDCSKIKLLEAAITP-ETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPY  195 (403)
T ss_dssp             ------GGGTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTT
T ss_pred             ------HHcCCEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccc
Confidence                  011234566777799999999975 6889999998888888776    999999999999 9999999997652


Q ss_pred             cccccccccccCCCccee--eecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH
Q 013008          294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA  366 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~  366 (451)
                       .+..     .+..+|++  +++|.+++ | .++|+++++ +++++.+.......+...+|+.++++..+++.+..  +.
T Consensus       196 -~~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~r~~~  269 (403)
T 3cog_A          196 -FQRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEK  269 (403)
T ss_dssp             -TCCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred             -cCCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHH
Confidence             2221     12346766  78899985 4 689999985 78888775433334455788888888777764311  11


Q ss_pred             HHHH------HHhCC--------------CCcc----eecccceeEEEEecCChHHHHHHHHHCCceeee---c------
Q 013008          367 FLAS------KLARN--------------PHVK----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLT---A------  413 (451)
Q Consensus       367 ~~~~------~~~~~--------------~~~~----~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~------  413 (451)
                      ..++      +++++              |.+.    ..++.|.++.|.+........+.|.+.|++...   +      
T Consensus       270 ~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~  349 (403)
T 3cog_A          270 HFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLA  349 (403)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSSSSCEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCcceee
Confidence            1111      23332              2111    122458888888853344556666677875431   1      


Q ss_pred             -------------------CC-CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          414 -------------------GK-GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       414 -------------------~~-~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                                         +. .+.+|+++....++++|+.+.+.|+++
T Consensus       350 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~  398 (403)
T 3cog_A          350 ELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA  398 (403)
T ss_dssp             ECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence                               11 368999999877666666666655544

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.87  E-value=1.8e-20  Score=188.67  Aligned_cols=278  Identities=21%  Similarity=0.155  Sum_probs=184.6

Q ss_pred             cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008          132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT  211 (451)
Q Consensus       132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~  211 (451)
                      +.+..+.++...+++++++++++.+..++++||++|+..+++.+.           .++++||+.++.||+.........
T Consensus        50 ~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~-----------~~gd~vi~~~~~~~~~~~~~~~~~  118 (421)
T 2ctz_A           50 NIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-----------QAGDNIVSTPNLYGGTFNQFKVTL  118 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSCCCHHHHHHHHTHH
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHHH
Confidence            334445666789999999999997777888899999999999763           158999999999998764432111


Q ss_pred             CCCCcCCCCcCCCCCeeEe-eCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008          212 SKEHYRSPFEPVMPGVNFV-EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC  290 (451)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  290 (451)
                      .         .....+.++ +.+|+++|++++++ ++++|+++++++++|.+.+    +++|+++|++||+++|+||+|+
T Consensus       119 ~---------~~g~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~  184 (421)
T 2ctz_A          119 K---------RLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFG  184 (421)
T ss_dssp             H---------HTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGG
T ss_pred             H---------HcCCEEEEECCCCCHHHHHHhhcc-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcc
Confidence            0         011234556 66799999999975 6899999999999898776    9999999999999999999996


Q ss_pred             CCCcccccccccccCCCccee--eecccccC-Cccccccccc---HHH----HhhccCC---Ccc---------------
Q 013008          291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVT---EKV----ASAINYG---DHG---------------  342 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~---~~i----~~~~~~~---~~~---------------  342 (451)
                      ++|+.+..+     +..+|++  +++|.+++ |.++|++++.   +++    .+.+.+.   .++               
T Consensus       185 ~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~  259 (421)
T 2ctz_A          185 MGGYLLRPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVK  259 (421)
T ss_dssp             GGGTSCCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHH
T ss_pred             cccccCCcc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHH
Confidence            676554432     2347887  78899986 6888887763   122    1122111   111               


Q ss_pred             --------CCCCCcHHHHHHHHHHHHHhcC--hHH------HHHHHhCCCCccee-------------------ccccee
Q 013008          343 --------STFAGSPLVCNAAIAVLDKISN--PAF------LASKLARNPHVKDV-------------------RGLGLI  387 (451)
Q Consensus       343 --------~t~~~~~~~~aaa~aal~~~~~--~~~------~~~~~~~~~~~~~v-------------------~g~G~~  387 (451)
                              .....+|+.++++...++.+..  +..      +.+.++.+|.+..+                   ++.|.+
T Consensus       260 ~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~i  339 (421)
T 2ctz_A          260 ARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAV  339 (421)
T ss_dssp             HHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSE
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceE
Confidence                    1235678888887777765321  111      11144566655443                   467889


Q ss_pred             EEEEecCC---hHHHHHHHHHCCceeeec-------------------------C-CCCEEEEeCCCCCCHHHHHHHHHH
Q 013008          388 IGIEFDVS---ATPVVDACRDSGLLVLTA-------------------------G-KGNVVRLVPPLIISEQELDQAVEI  438 (451)
Q Consensus       388 ~~~~~~~~---~~~~~~~l~~~Gv~~~~~-------------------------~-~~~~iri~~~~~~t~e~i~~~l~~  438 (451)
                      +.|++...   ...+.+.|...++.+..+                         + ..+.+|+++.+    |+++++++.
T Consensus       340 vsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~~~li~~  415 (421)
T 2ctz_A          340 LTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVEDLKAE  415 (421)
T ss_dssp             EEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHH
Confidence            99998532   222333332222222111                         1 12678997654    578888888


Q ss_pred             HHHHH
Q 013008          439 LCKTL  443 (451)
Q Consensus       439 l~~~l  443 (451)
                      |++++
T Consensus       416 l~~al  420 (421)
T 2ctz_A          416 LKEAL  420 (421)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88765

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.87  E-value=4e-21  Score=192.07  Aligned_cols=318  Identities=10%  Similarity=0.080  Sum_probs=193.5

Q ss_pred             EEEeeccCcccccCCC--CCHHHHHHHHHHH-hhc-ccc--cCCCCCHHHHHHHHHHhhccC----CCe--EEecCCHHH
Q 013008           99 EYLDLSSGIAVNALGH--GDADWIKAVVDQA-NVL-THV--SNMYYSIPQIELAKRLVACSF----ADR--VFFSNTGTE  166 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~-~~~-~~~--~~~~~~~~~~~l~~~l~~~~~----~e~--v~~~~sG~e  166 (451)
                      ..|||..|.+...=|.  .++.|.+|+. .+ +.. .+.  ...+..+.++++++++....+    .++  +++|+||++
T Consensus        30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~  108 (405)
T 3k7y_A           30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG  108 (405)
T ss_dssp             SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred             CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence            4688887764332232  4678888876 43 221 121  122233345666666644432    243  689999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CC-CeeEeeCCCHHHHHHhcCC
Q 013008          167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MP-GVNFVEYGNIEATRKLIQP  244 (451)
Q Consensus       167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~le~~l~~  244 (451)
                      |+..+++++..+.         + |.|++.+|+|.++.......+.... .   .|+ .+ +...    |+++|++.+..
T Consensus       109 al~~~~~~l~~~~---------~-d~Vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~~----d~~~l~~~l~~  170 (405)
T 3k7y_A          109 AIFVLLEFLKMLN---------V-ETLYVTNPPYINHVNMIESRGFNLK-Y---INFFDYNLIDI----NYDLFLNDLRN  170 (405)
T ss_dssp             HHHHHHHHHHTTT---------C-CEEEEESSCCHHHHHHHHTTTCEEE-E---ECCEETTTTEE----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---------C-CEEEEeCCCCHhHHHHHHHcCCeEE-E---EeccccccCCc----CHHHHHHHHHh
Confidence            9999999777321         5 8999999999988655433332211 1   111 01 1111    78999998862


Q ss_pred             -CCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccccc-CCCcc---eeeecc
Q 013008          245 -GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHEHY-GIFPD---IMTLAK  315 (451)
Q Consensus       245 -~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~~-~~~pd---i~t~sK  315 (451)
                       ...+++++.|. ++++| ..++.+.+++|.++|++||+++|+||+|.+|...+.   ......+ .....   +.+|||
T Consensus       171 ~~~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  249 (405)
T 3k7y_A          171 IPNGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSK  249 (405)
T ss_dssp             SCSSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCCCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCc
Confidence             34567777665 45555 468999999999999999999999999998854321   1111111 11222   448999


Q ss_pred             ccc-CCcccccccc---cHHHHhhccCC---CccCCC-CCcHHHHHHHHHHHHHhc-ChHHH-----------HH-----
Q 013008          316 PLA-GGLPIGAALV---TEKVASAINYG---DHGSTF-AGSPLVCNAAIAVLDKIS-NPAFL-----------AS-----  370 (451)
Q Consensus       316 ~lg-~G~~iG~v~~---~~~i~~~~~~~---~~~~t~-~~~~~~~aaa~aal~~~~-~~~~~-----------~~-----  370 (451)
                      .++ .|+|+||+++   ++++++.+...   ....++ +.+.++++++.++|+.-. .+.|.           ++     
T Consensus       250 ~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~  329 (405)
T 3k7y_A          250 NMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFF  329 (405)
T ss_dssp             TSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 6999999753   67666544211   111233 345677777776665210 01111           11     


Q ss_pred             -HHh----CCCC---cceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          371 -KLA----RNPH---VKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       371 -~~~----~~~~---~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                       .++    +++.   +....+ .|+++|+.++.   ++++.|.++||++.|++     ||+++ ..++++|++++++|.+
T Consensus       330 ~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~---~~~~~L~~~gV~v~p~~-----Ris~a-~~~~~~i~~~~~~i~~  400 (405)
T 3k7y_A          330 NKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA---KIAEHLKTHHIYIINNG-----RINVS-GITKNNVDYIADKICL  400 (405)
T ss_dssp             HHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG---GGTTTTTTTTEECCTTS-----EEEGG-GCCTTHHHHHHHHHHH
T ss_pred             HHHHhhhhhcCCCCCCccccCCceEEEecCCCH---HHHHHHHHCCEeecCCC-----eEEEe-ccCHHHHHHHHHHHHH
Confidence             223    3321   233333 46666655432   44566777899999853     77644 3578899999999999


Q ss_pred             HHHH
Q 013008          442 TLPV  445 (451)
Q Consensus       442 ~l~~  445 (451)
                      ++++
T Consensus       401 ~~~~  404 (405)
T 3k7y_A          401 SLSQ  404 (405)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8864

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.86  E-value=1.7e-20  Score=184.07  Aligned_cols=290  Identities=10%  Similarity=-0.036  Sum_probs=188.4

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCC---HHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYS---IPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE  188 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~  188 (451)
                      .+|++.+++.+++.+..........   +...++.++++++++   .+++++++||++|+..+++.+.            
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~------------   82 (362)
T 3ffr_A           15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV------------   82 (362)
T ss_dssp             CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC------------
T ss_pred             CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc------------
Confidence            5788999988887663311111111   235778888888876   4679999999999999999665            


Q ss_pred             CCceEEEEcCCccCChhh-hhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008          189 PATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIY  262 (451)
Q Consensus       189 ~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~  262 (451)
                      .+ ++++..+.+++.... .....+.            .+..++.     -|+++|+  +. +++++|+++++++++|.+
T Consensus        83 ~~-~~i~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~--~~-~~~~~v~~~~~~nptG~~  146 (362)
T 3ffr_A           83 EK-KSFHCVNGSFSKRFYEFAGELGR------------EAYKEEAAFGKGFYPADIT--VP-ADAEIICLTHNETSSGVS  146 (362)
T ss_dssp             SS-EEEEEECSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCGGGCC--CC-TTCCEEEEESEETTTTEE
T ss_pred             CC-cEEEEcCcHHHHHHHHHHHHhCC------------CeEEEecCCCCCCCHHHHh--cc-CCccEEEEEcCCCCccee
Confidence            23 666666655553211 1111121            1112221     1677777  43 467788887778888877


Q ss_pred             ccCHHHHHHHHHHHHHh-CCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhccCC
Q 013008          263 SATKEFLQFLRDACDDA-GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG  339 (451)
Q Consensus       263 ~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~  339 (451)
                      .+    +++|.++|++| |+++|+||+|+.....   ...  ..  .|++  +++|.++++..+|++++++++++.+.+.
T Consensus       147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~---~~~--~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~  215 (362)
T 3ffr_A          147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK---FDW--TK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKAL  215 (362)
T ss_dssp             CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC---CCT--TS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHH
T ss_pred             CC----HHHHHHHHHhCCCCEEEEecccccCCcc---cCh--hH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhc
Confidence            76    99999999999 9999999998632111   111  11  5666  4569998544467788888887765431


Q ss_pred             Cc--------------------cC-CCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceec---
Q 013008          340 DH--------------------GS-TFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVR---  382 (451)
Q Consensus       340 ~~--------------------~~-t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~---  382 (451)
                      ..                    .. .++.+..++.++.++++.+...   ...++          .++++|.+....   
T Consensus       216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  295 (362)
T 3ffr_A          216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDA  295 (362)
T ss_dssp             HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCG
T ss_pred             cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCCh
Confidence            11                    11 3445677777777777754322   22221          334455443322   


Q ss_pred             --ccceeEEEEecCChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          383 --GLGLIIGIEFDVSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       383 --g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                        ..+.++++.+..+..++.+.|.++||.+.++.   .++.+|+++....++|++++++++|++++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          296 KLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             GGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             hhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence              13556777774467889999999999998752   24789999998899999999999998764

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.85  E-value=1.2e-19  Score=186.60  Aligned_cols=326  Identities=10%  Similarity=0.040  Sum_probs=193.6

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH----HHHHHHHHhhccCC---CeEEecCCHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP----QIELAKRLVACSFA---DRVFFSNTGTEAN  168 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~---e~v~~~~sG~eA~  168 (451)
                      .+..|+|+..+      +..+|.+.+++....-.. +.......+.    ..++.++|+++++.   +.++|++||++|+
T Consensus        99 ~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~  171 (497)
T 2qma_A           99 QHPDCIAHLHT------PPLMPAVAAEAMIAALNQ-SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSN  171 (497)
T ss_dssp             TSTTBCSSSCC------CCBHHHHHHHHHHHHHCC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHH
T ss_pred             CCCCeeEeCCC------CCcHHHHHHHHHHHhhcc-cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHH
Confidence            45677776654      346788888776554321 1111111222    44556668888873   7899999999999


Q ss_pred             HHHHHHHHHHhhh---------cCCCCCCC--Cc-eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC---
Q 013008          169 EAAIKFARKFQRH---------SNPDSKEP--AT-EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG---  233 (451)
Q Consensus       169 ~~al~~a~~~~~~---------~~~~~~~~--~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  233 (451)
                      ..+++++|.+...         .+..   +  ++ .|++. ...|.+...+....+...         ..++.+|.+   
T Consensus       172 ~~al~~ar~~~~~~~~~~~~~~~G~~---~~~g~~~v~~s-~~~h~s~~~~~~~~g~g~---------~~v~~v~~~~~~  238 (497)
T 2qma_A          172 QMGLMLARDWIADKLSGHSIQKLGLP---DYADKLRIVCS-KKSHFTVQKSASWMGLGE---------KAVMTVDANADG  238 (497)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHCSC---GGGGGEEEEEE-TTSCTHHHHHHHHTTSCG---------GGEEEECBCTTS
T ss_pred             HHHHHHHHHHHHHhhcccchhhcccc---cccCCeEEEEC-CCchHHHHHHHHHcCCCc---------ccEEEEecCCCC
Confidence            9999998753210         0000   1  34 45554 445555444433322100         023334433   


Q ss_pred             --CHHHHHHhcCCC----C-eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC
Q 013008          234 --NIEATRKLIQPG----K-TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI  306 (451)
Q Consensus       234 --d~~~le~~l~~~----~-~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~  306 (451)
                        |+++|+++|++.    . +.+|++...++++|.+.+    +++|+++|++||++|++|++|.++..... +.....++
T Consensus       239 ~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi  313 (497)
T 2qma_A          239 TMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGV  313 (497)
T ss_dssp             SBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTG
T ss_pred             cCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCc
Confidence              788999888631    2 346666655666677666    99999999999999999999987755443 33333455


Q ss_pred             -Ccceeee--cccccCCcccccccccH-HHHhhccCCC----ccCCCCCcHHH----------HHHHHHHHHHhcChHH-
Q 013008          307 -FPDIMTL--AKPLAGGLPIGAALVTE-KVASAINYGD----HGSTFAGSPLV----------CNAAIAVLDKISNPAF-  367 (451)
Q Consensus       307 -~pdi~t~--sK~lg~G~~iG~v~~~~-~i~~~~~~~~----~~~t~~~~~~~----------~aaa~aal~~~~~~~~-  367 (451)
                       .+|++++  +|.+++++++|++++++ ..++.+....    ...+...++..          ..+..++++.+..+.+ 
T Consensus       314 ~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~  393 (497)
T 2qma_A          314 ERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALG  393 (497)
T ss_dssp             GGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHH
T ss_pred             ccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHH
Confidence             6888876  89998778999998764 4445443210    00000112111          1122334554432211 


Q ss_pred             --HHH----------HHhCCCCccee-cccceeEEEEecCC-------hHHHHHHHHHCCceeeecC---CCCEEEEeC-
Q 013008          368 --LAS----------KLARNPHVKDV-RGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAG---KGNVVRLVP-  423 (451)
Q Consensus       368 --~~~----------~~~~~~~~~~v-~g~G~~~~~~~~~~-------~~~~~~~l~~~Gv~~~~~~---~~~~iri~~-  423 (451)
                        .++          .++..+.+..+ ...+.++.|.+...       ..++.+.|.++|+.+.+..   ...++|+++ 
T Consensus       394 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~  473 (497)
T 2qma_A          394 DMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTIL  473 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEec
Confidence              111          33445544322 34455777776321       2457788889999886531   125799987 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q 013008          424 PLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       424 ~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +..+|++|+++++++|+++++++
T Consensus       474 ~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          474 NPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhh
Confidence            88999999999999999988764

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.85  E-value=8.9e-20  Score=181.90  Aligned_cols=293  Identities=10%  Similarity=0.092  Sum_probs=187.1

Q ss_pred             CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008          116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS  195 (451)
Q Consensus       116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~  195 (451)
                      +|++.+++.+.++.. +.  ....+...++++.++++++.+++++++||++|+..+++++.  .        .++++|++
T Consensus        11 ~~~v~~a~~~~~~~~-~~--~~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~--~--------~~gd~Vl~   77 (394)
T 1o69_A           11 GGNELKYIEEVFKSN-YI--APLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG--V--------KQDDIVLA   77 (394)
T ss_dssp             -CCHHHHHHHHHHHT-TT--SCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred             CHHHHHHHHHHHHcC-Cc--cCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCCCEEEE
Confidence            467888888887652 11  11124478999999999998999999999999999999762  1        15889999


Q ss_pred             EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC--CeEEEEEccccCCCCccccCHHHHHHHH
Q 013008          196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLR  273 (451)
Q Consensus       196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~  273 (451)
                      .+++|++........+.....    .+...+.    ..|+++|++++++.  ++++|++++.   .|...+    +++|.
T Consensus        78 ~~~~~~~~~~~~~~~g~~~~~----v~~~~~~----~~d~~~l~~~i~~~~~~~~~v~~~~~---~G~~~~----l~~i~  142 (394)
T 1o69_A           78 SSFTFIASVAPICYLKAKPVF----IDCDETY----NIDVDLLKLAIKECEKKPKALILTHL---YGNAAK----MDEIV  142 (394)
T ss_dssp             ESSSCGGGTHHHHHTTCEEEE----ECBCTTS----SBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCC----HHHHH
T ss_pred             CCCccHHHHHHHHHcCCEEEE----EEeCCCC----CcCHHHHHHHHhcccCCceEEEEECC---CCChhh----HHHHH
Confidence            999999886544332211110    0111110    12789999988632  5778888763   344444    99999


Q ss_pred             HHHHHhCCEEEEecccc-CCCcccccccccccCCCcceeeec--ccccCCccccccccc-HHHHhhccCCC-c-------
Q 013008          274 DACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAINYGD-H-------  341 (451)
Q Consensus       274 ~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~~~~~-~-------  341 (451)
                      ++|++||+++|+||+|+ |+.+.|....  .++ .+|+.++|  |.++ |.++|+++++ +++++.+.... .       
T Consensus       143 ~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~  218 (394)
T 1o69_A          143 EICKENDIVLIEDAAEALGSFYKNKALG--TFG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLH  218 (394)
T ss_dssp             HHHHHTTCEEEEECTTCTTCEETTEETT--SSS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSS
T ss_pred             HHHHHcCCEEEEECcCcccceeCCcccc--ccc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCcc
Confidence            99999999999999998 6544443211  111 36788884  6665 4589999995 78877664211 0       


Q ss_pred             ------cCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecc-----cce-eEEEEecC-----
Q 013008          342 ------GSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRG-----LGL-IIGIEFDV-----  394 (451)
Q Consensus       342 ------~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g-----~G~-~~~~~~~~-----  394 (451)
                            +..+..+++.++++++.++.+++  ..++          .++..  +.....     .+. ++++.++.     
T Consensus       219 ~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~  294 (394)
T 1o69_A          219 YEHLDYGYNYRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNEL  294 (394)
T ss_dssp             CCCSSCCCBCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGS
T ss_pred             ccccccCcccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhcc
Confidence                  11122466777776665554322  1111          22222  211111     122 35566542     


Q ss_pred             ------------------ChHHHHHHHHHCCceeeecCCC-----------------------CEEEEeCCCCCCHHHHH
Q 013008          395 ------------------SATPVVDACRDSGLLVLTAGKG-----------------------NVVRLVPPLIISEQELD  433 (451)
Q Consensus       395 ------------------~~~~~~~~l~~~Gv~~~~~~~~-----------------------~~iri~~~~~~t~e~i~  433 (451)
                                        ...++.+.|.++||.+.++...                       ..+++.....+|+||++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~  374 (394)
T 1o69_A          295 NACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVY  374 (394)
T ss_dssp             CCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred             ccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHH
Confidence                              3567899999999998865210                       23444446668999999


Q ss_pred             HHHHHHHHHHH
Q 013008          434 QAVEILCKTLP  444 (451)
Q Consensus       434 ~~l~~l~~~l~  444 (451)
                      +++++|+++++
T Consensus       375 ~~~~~l~~~~~  385 (394)
T 1o69_A          375 EISKLILKSIK  385 (394)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.84  E-value=1.1e-18  Score=173.64  Aligned_cols=299  Identities=13%  Similarity=0.106  Sum_probs=192.2

Q ss_pred             cCCC--CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008          111 ALGH--GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE  188 (451)
Q Consensus       111 ~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~  188 (451)
                      +++.  -+|++.+++.+++++..    .+......++++.++++++.+.+++++||++|+..+++.++. ....+   ..
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~-~~~~~---~~   78 (390)
T 3b8x_A            7 PLASSTWDDLEYKAIQSVLDSKM----FTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFF-TKKPR---LK   78 (390)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTC----CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTS-SSSCS---CC
T ss_pred             cCCCCCCCHHHHHHHHHHHHcCC----CCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHh-hhhcC---CC
Confidence            3444  47899999999887632    234566889999999999987899999999999999997631 00000   02


Q ss_pred             CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-CHHHHHHhcCCCCeEEEEEccccCCCCccccCHH
Q 013008          189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      ++++|++..++||+........+.... .   .+..++.    +. |+++|++++++ ++++|++.+..   |...+   
T Consensus        79 ~g~~Vi~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~----~~~d~~~l~~~i~~-~~~~v~~~~~~---g~~~~---  143 (390)
T 3b8x_A           79 KGDEIIVPAVSWSTTYYPLQQYGLRVK-F---VDIDINT----LNIDIESLKEAVTD-STKAILTVNLL---GNPNN---  143 (390)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHTTCEEE-E---ECBCTTT----CSBCHHHHHHHCCT-TEEEEEEECGG---GCCCC---
T ss_pred             CcCEEEECCCCcHHHHHHHHHcCCEEE-E---EecCccc----cCcCHHHHHHHhCc-CCeEEEEECCc---cChhh---
Confidence            578999999999987654432221111 0   1111110    11 89999999975 56777765332   33334   


Q ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCc---ccccccccH-HHHhhccC---CC
Q 013008          268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGL---PIGAALVTE-KVASAINY---GD  340 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~---~iG~v~~~~-~i~~~~~~---~~  340 (451)
                       +++|.++|++||+++|+||+|+ +|...   ....++..+|+.++||..+.++   ..|++++++ ++.+.+.+   ..
T Consensus       144 -~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g  218 (390)
T 3b8x_A          144 -FDEINKIIGGRDIILLEDNCES-MGATF---NNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHG  218 (390)
T ss_dssp             -HHHHHHHHTTSCCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTT
T ss_pred             -HHHHHHHHHHcCCEEEEECcCc-ccCEE---CCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcC
Confidence             9999999999999999999997 22111   1234577789999887554221   347777775 66543321   11


Q ss_pred             ----------------------------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec
Q 013008          341 ----------------------------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR  382 (451)
Q Consensus       341 ----------------------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~  382 (451)
                                                  .+.++..+++.++++++.++.++.  ..++          .++.+|.+....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L~~~~~~~~~~  296 (390)
T 3b8x_A          219 WTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPR--FISVRRKNAEYFLDKFKDHPYLDVQQ  296 (390)
T ss_dssp             BSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCSSEEECC
T ss_pred             CCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCcccCC
Confidence                                        112333678888888887876532  1111          234454332221


Q ss_pred             --ccce--eEEEEec----CChHHHHHHHHHCCceeeec-------C-C--C------------------CEEEEeCCCC
Q 013008          383 --GLGL--IIGIEFD----VSATPVVDACRDSGLLVLTA-------G-K--G------------------NVVRLVPPLI  426 (451)
Q Consensus       383 --g~G~--~~~~~~~----~~~~~~~~~l~~~Gv~~~~~-------~-~--~------------------~~iri~~~~~  426 (451)
                        ....  .+.+.+.    ....++.+.|.++||.+.+.       . .  .                  +.+|+.+...
T Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~  376 (390)
T 3b8x_A          297 ETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQI  376 (390)
T ss_dssp             CCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSS
T ss_pred             CCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCC
Confidence              1222  2444554    25778999999999988752       1 0  0                  2589999999


Q ss_pred             CCHHHHHHHHHHH
Q 013008          427 ISEQELDQAVEIL  439 (451)
Q Consensus       427 ~t~e~i~~~l~~l  439 (451)
                      +|+||++++++.|
T Consensus       377 ~t~~di~~i~~~l  389 (390)
T 3b8x_A          377 ELFDEIDYLREVL  389 (390)
T ss_dssp             CCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999876

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.83  E-value=1.5e-19  Score=181.27  Aligned_cols=280  Identities=13%  Similarity=0.040  Sum_probs=183.4

Q ss_pred             ccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc
Q 013008          131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL  210 (451)
Q Consensus       131 ~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~  210 (451)
                      .+.++.+.++...+++++++++.+.+.+++++||++|+..+++.+.           .++|+||+.++.|++........
T Consensus        73 ~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~  141 (415)
T 2fq6_A           73 ELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFI-----------EQGDHVLMTNTAYEPSQDFCSKI  141 (415)
T ss_dssp             SCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTTCEEEEETTSCHHHHHHHHHT
T ss_pred             CccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHH
Confidence            3445666778899999999999998888888999999999998543           15899999999998754221111


Q ss_pred             cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH--hCCEEEEecc
Q 013008          211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD--AGALLVFDEV  288 (451)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv  288 (451)
                      .         ......+.+++.+|+++|++++++ ++++|++|.++++.|.+.+    +++|.++|++  ||+++|+||+
T Consensus       142 l---------~~~G~~v~~v~~~d~~~le~ai~~-~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a  207 (415)
T 2fq6_A          142 L---------SKLGVTTSWFDPLIGADIVKHLQP-NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNT  207 (415)
T ss_dssp             G---------GGGTCEEEEECTTCGGGGGGGCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECT
T ss_pred             H---------HHcCcEEEEECCCCHHHHHHhhcc-CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECC
Confidence            0         011234566777899999999975 6889999998888888776    9999999999  9999999999


Q ss_pred             ccCCCcccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC
Q 013008          289 QCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN  364 (451)
Q Consensus       289 ~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~  364 (451)
                      |... ......     ....|++  +++|.+++ | ..+|++++++++++.+...........+|..+++++..++.+..
T Consensus       208 ~a~~-~~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~~  281 (415)
T 2fq6_A          208 WAAG-VLFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGV  281 (415)
T ss_dssp             TTTT-TSSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             Cccc-ccCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH
Confidence            9632 222211     2235766  67899986 4 45789988888777665322111223467766666666654321


Q ss_pred             --hHHHHH------HHhCCCCccee------------------cccceeEEEEecCC--hH---HHHHHHHHCCcee---
Q 013008          365 --PAFLAS------KLARNPHVKDV------------------RGLGLIIGIEFDVS--AT---PVVDACRDSGLLV---  410 (451)
Q Consensus       365 --~~~~~~------~~~~~~~~~~v------------------~g~G~~~~~~~~~~--~~---~~~~~l~~~Gv~~---  410 (451)
                        +...++      .++++|.+..+                  ++.|.+++|.+...  ..   .+.+.|...++.+   
T Consensus       282 r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G  361 (415)
T 2fq6_A          282 RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWG  361 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCC
Confidence              111111      34444432221                  24678889988531  22   2333221112111   


Q ss_pred             -------e--e-----------cC-CCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          411 -------L--T-----------AG-KGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       411 -------~--~-----------~~-~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                             .  |           .+ .++.+|+++....++++++.+.++|++
T Consensus       362 ~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          362 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             SSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             CCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence                   1  1           11 136899999998888888888877764

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.82  E-value=7.8e-19  Score=175.78  Aligned_cols=308  Identities=11%  Similarity=0.038  Sum_probs=175.5

Q ss_pred             HHHHHHHHHHHhhcc-cccCCCCCHHHHHHHHHHhhcc-C----CC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008          117 ADWIKAVVDQANVLT-HVSNMYYSIPQIELAKRLVACS-F----AD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKE  188 (451)
Q Consensus       117 p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~----~e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~  188 (451)
                      |.|++|..+.++... +.+  .+.....+|.+.+++++ +    .+  ...-|.+|+.|+..++..+.....       +
T Consensus        65 ~~Vk~A~~~~~~~~~~~~Y--~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~-------~  135 (420)
T 4h51_A           65 RVVRKAEQLLLDMNLDYEY--LPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFD-------A  135 (420)
T ss_dssp             HHHHHHHHHHHHTTCCCCC--CCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSC-------T
T ss_pred             HHHHHHHHHHhcCCCCCCC--CCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcC-------C
Confidence            788888877665432 211  22222334444444432 2    22  345588999999988886653221       2


Q ss_pred             CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCH
Q 013008          189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATK  266 (451)
Q Consensus       189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~  266 (451)
                      ++|.|++.+|+|..+.......++.......+.  .++...   .|.+.+.+.++  ..+..+++..+.++++| ..++.
T Consensus       136 pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~--~~~~~~---~d~~~~~~~l~~~~~~~~vll~~~p~NPtG-~~~~~  209 (420)
T 4h51_A          136 ETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYY--DPKTVS---LNFEGMKKDILAAPDGSVFILHQCAHNPTG-VDPSQ  209 (420)
T ss_dssp             TTSCEEEEESCCTHHHHHHHHTTCCCEEEEECE--EGGGTE---ECHHHHHHHHHHSCSSCEEEEESSSCTTTC-CCCCH
T ss_pred             CCCEEEEecCCchhHHHHHHHcCCeEEEeeccc--cccccC---CCHHHHHHHHhccCCCcEEEEeCCCCCCCC-CCCCH
Confidence            689999999999877654433333221110000  011111   15666666654  33455555555555555 46899


Q ss_pred             HHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccc---ccC-CCcceeeecccccC-CcccccccccHHHHhhc--
Q 013008          267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE---HYG-IFPDIMTLAKPLAG-GLPIGAALVTEKVASAI--  336 (451)
Q Consensus       267 ~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~---~~~-~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~--  336 (451)
                      +.+++|.++|+++++++|+||+|.+|...+.   .+...   ..+ ...-+.+|||.++. |+|+||+++..+..+..  
T Consensus       210 ~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~  289 (420)
T 4h51_A          210 EQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD  289 (420)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHH
Confidence            9999999999999999999999999965432   11111   111 12223489999985 99999998753322211  


Q ss_pred             -cC---CCccCCC-CCcHHHHHHHHHHHHHhc-ChHHHH-------H-----------HHhC-CCC-cc-eecccceeEE
Q 013008          337 -NY---GDHGSTF-AGSPLVCNAAIAVLDKIS-NPAFLA-------S-----------KLAR-NPH-VK-DVRGLGLIIG  389 (451)
Q Consensus       337 -~~---~~~~~t~-~~~~~~~aaa~aal~~~~-~~~~~~-------~-----------~~~~-~~~-~~-~v~g~G~~~~  389 (451)
                       ..   .....++ +.+..++.++...+..-. ...|.+       +           +.+. .+. .. ..+..|+|.+
T Consensus       290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~  369 (420)
T 4h51_A          290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF  369 (420)
T ss_dssp             HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE
T ss_pred             HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe
Confidence             10   0112233 344555555554443100 011111       1           1111 111 11 1345687776


Q ss_pred             EEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          390 IEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       390 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      +.+   ..+.++.|.++||++.++|     ||+++ ..+++.|++++++|.++++++.+
T Consensus       370 ~gl---s~e~v~~L~e~~Vy~~~~g-----Ris~A-gl~~~ni~~~a~aI~~vvr~i~r  419 (420)
T 4h51_A          370 LGL---SKAQCEYCQNHNIFITVSG-----RANMA-GLTHETALMLAQTINDAVRNVNR  419 (420)
T ss_dssp             CCC---CHHHHHHHHHTTEECCTTC-----EEEGG-GCCHHHHHHHHHHHHHHHC----
T ss_pred             cCc---CHHHHHHHHhCCEEEcCCC-----EEEec-cCCHHHHHHHHHHHHHHHHHhhc
Confidence            544   2345678889999988753     78654 46899999999999999987754

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.81  E-value=7.9e-19  Score=176.64  Aligned_cols=166  Identities=19%  Similarity=0.142  Sum_probs=121.5

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .+..+.++...+|+++++++++.+.+++++||++|+..+++.+.           .++|.||+.++.|++......... 
T Consensus        75 ~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~-----------~~Gd~Vi~~~~~y~~~~~~~~~~~-  142 (430)
T 3ri6_A           75 VYSRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLA-----------RAGDSVVTTDRLFGHTLSLFQKTL-  142 (430)
T ss_dssp             -----CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHTHH-
T ss_pred             cccCCCCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEcCCCchhHHHHHHHHH-
Confidence            34556677899999999999998888899999999999998664           268999999999987654221000 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                              ......+.+++.+|+++|++++++ ++++|++|+++++.|.+.+    +++|+++|++||+++|+||+|+..
T Consensus       143 --------~~~G~~~~~v~~~d~~~l~~ai~~-~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~~  209 (430)
T 3ri6_A          143 --------PSFGIEVRFVDVMDSLAVEHACDE-TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTPP  209 (430)
T ss_dssp             --------HHTTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSCT
T ss_pred             --------HHcCCEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence                    011234567788899999999975 6889999998888888776    999999999999999999999622


Q ss_pred             CcccccccccccCCCcceeeecccccC-Cccc-cccc
Q 013008          293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAAL  327 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~  327 (451)
                       ..   .....+|....+.+++|.++| |..+ |+++
T Consensus       210 -~~---~~~~~~g~div~~S~sK~l~g~g~~~gG~vv  242 (430)
T 3ri6_A          210 -YL---LEAKRLGVDIEVLSSTKFISGGGTSVGGVLI  242 (430)
T ss_dssp             -TT---CCGGGGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred             -cc---CChHHcCCEEEEECCcccccCCCCceEEEEE
Confidence             11   222344554445578899986 4444 4444

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.80  E-value=1.1e-17  Score=168.46  Aligned_cols=205  Identities=17%  Similarity=0.088  Sum_probs=142.1

Q ss_pred             CCHHHHHHHHHHHhh---cccc-cCCCCCHHHHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008          115 GDADWIKAVVDQANV---LTHV-SNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK  187 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~---~~~~-~~~~~~~~~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~  187 (451)
                      ++++|.+|+.++...   +... ...+....+.+++++++++++.+...+   ++||++|+..+++.+.           
T Consensus        36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~-----------  104 (431)
T 3ht4_A           36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL-----------  104 (431)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC-----------
Confidence            567888888775321   1111 122345668899999999999776554   6799999999998554           


Q ss_pred             CCCceEEEEc-CCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008          188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGI  261 (451)
Q Consensus       188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~  261 (451)
                      .++|+||+.+ +.| +.+...+.+++.  +...+......+..++.     .|+++|++++++ ++++|++++..++.+.
T Consensus       105 ~~Gd~Vl~~~~~~y-~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~  180 (431)
T 3ht4_A          105 RPGDELLYITGKPY-DTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATR  180 (431)
T ss_dssp             CTTCEEEECSSSCC-TTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSS
T ss_pred             CCCCEEEEeCCCCc-hhHHHHHhhccc--ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCC
Confidence            2688999998 555 445554444432  11222333344556665     389999999975 6889999964333333


Q ss_pred             cccCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC--cccccccccHHHHhhcc
Q 013008          262 YSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG--LPIGAALVTEKVASAIN  337 (451)
Q Consensus       262 ~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G--~~iG~v~~~~~i~~~~~  337 (451)
                      ...+.+.+++|+++|++  ||+++|+||+|..+.......   .++....+.+++|.++||  .+.|++++++++++.+.
T Consensus       181 ~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~  257 (431)
T 3ht4_A          181 PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACA  257 (431)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHH
Confidence            46688889999999999  999999999998775433322   234444445789999874  67799999999888774

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.80  E-value=1.5e-17  Score=171.11  Aligned_cols=289  Identities=15%  Similarity=0.026  Sum_probs=173.1

Q ss_pred             HHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhh----hcCCCCCCCCc-eEEEEcCCccCChhhhhhccC
Q 013008          142 QIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQR----HSNPDSKEPAT-EFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       142 ~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~----~~~~~~~~~~~-~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      ..++.++++++++.    +.++|++||++|+..++++++.++.    ..+..  ..++ .|++.++. |.....+....+
T Consensus       134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~--~~~~~~v~~s~~~-h~s~~~~~~~~g  210 (504)
T 2okj_A          134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA--AVPKLVLFTSEQS-HYSIKKAGAALG  210 (504)
T ss_dssp             HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGG--GSCCEEEEEETTS-CTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCcc--ccCCeEEEECCcc-hHHHHHHHHHcC
Confidence            45566777888773    4799999999999999999875321    00000  0013 45555544 444433333222


Q ss_pred             CCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCC-----CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCE
Q 013008          213 KEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL  282 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~-----~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l  282 (451)
                      ...         ..++.+|.+     |+++|+++|++.     ++++|++...+++.|.+.+    +++|.++|++||++
T Consensus       211 ~g~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~  277 (504)
T 2okj_A          211 FGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLW  277 (504)
T ss_dssp             SCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCE
T ss_pred             CCc---------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCE
Confidence            100         023334433     899999998631     4778888777677787766    99999999999999


Q ss_pred             EEEeccccCCCcccccccccccCC-Ccceeeec--ccccCCcccccccccH-HHHhhc----cCCCc-cCC---------
Q 013008          283 LVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTE-KVASAI----NYGDH-GST---------  344 (451)
Q Consensus       283 lI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~-~i~~~~----~~~~~-~~t---------  344 (451)
                      +++|++|.++......+.....++ .+|+++++  |.+++++++|++++++ ++++..    ..... ...         
T Consensus       278 lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (504)
T 2okj_A          278 LHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG  357 (504)
T ss_dssp             EEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCG
T ss_pred             EEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcc
Confidence            999999987643322222222344 57888775  9888768899999875 465431    11110 000         


Q ss_pred             -------CCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec---ccceeEEEEe-cC---------
Q 013008          345 -------FAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR---GLGLIIGIEF-DV---------  394 (451)
Q Consensus       345 -------~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~---g~G~~~~~~~-~~---------  394 (451)
                             ...+++.+.++++++..-.-.+..++          .++..|.+..+.   +.+.++.|.. ..         
T Consensus       358 ~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~  437 (504)
T 2okj_A          358 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP  437 (504)
T ss_dssp             GGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCH
T ss_pred             cCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccch
Confidence                   01235666666655542100111111          334455443332   3444445543 21         


Q ss_pred             --------ChHHHHHHHHHCCceeee-c--CC-CCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHH
Q 013008          395 --------SATPVVDACRDSGLLVLT-A--GK-GNVVRLVPP-LIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       395 --------~~~~~~~~l~~~Gv~~~~-~--~~-~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                              ...++.+.|.++|+++.. .  .. .+++|+++. ..+|++||++++++|+++++++
T Consensus       438 ~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          438 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             hhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                    034688889999964332 2  11 147999884 7889999999999999887654

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.79  E-value=2e-19  Score=182.35  Aligned_cols=275  Identities=13%  Similarity=0.053  Sum_probs=173.7

Q ss_pred             CCHHHHHHHHHHhhccCC-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCc
Q 013008          138 YSIPQIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY  216 (451)
Q Consensus       138 ~~~~~~~l~~~l~~~~~~-e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~  216 (451)
                      +.....++.+++++ ++. +.+++++|+++|+..+++++.           .++++|++.+++|++........+....+
T Consensus        55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~-----------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~  122 (446)
T 2x3l_A           55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFS-----------QKKGDILMARNVHKSVLHALDISQQEGHF  122 (446)
T ss_dssp             CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTT-----------TSSSCEEECTTCCHHHHHHHHHHTCCEEE
T ss_pred             cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhc-----------CCCCEEEEecCccHHHHHHHHHcCCeEEE
Confidence            34457788899999 874 568899999999999999764           16889999999988766443332222211


Q ss_pred             CCCCcCC--CCC--e-eEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008          217 RSPFEPV--MPG--V-NFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG  291 (451)
Q Consensus       217 ~~~~~~~--~~~--~-~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg  291 (451)
                      .    +.  ..+  . ..+   |+++|   +. .++++|++++ .++.|.+.+    +++|+++|++||++||+||+|++
T Consensus       123 v----~~~~~~~~~~~~~~---d~~~l---~~-~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~  186 (446)
T 2x3l_A          123 I----ETHQSPLTNHYNKV---NLSRL---NN-DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGA  186 (446)
T ss_dssp             C----EEEECTTTSSEEEE---EC-----------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCT
T ss_pred             E----eCeeccccCcCCCC---CHHHH---cC-CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhh
Confidence            1    11  111  0 111   44555   33 3566777777 444777666    99999999999999999999986


Q ss_pred             -CCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHh--hccCC-CccCCCCCcHHHHHHHHHHHHHhcC-
Q 013008          292 -LGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVAS--AINYG-DHGSTFAGSPLVCNAAIAVLDKISN-  364 (451)
Q Consensus       292 -~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~--~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~-  364 (451)
                       +...+........  .+|+++.|  |.++++.++|++++++++++  .+... ....+.+.+...+++..++++.++. 
T Consensus       187 ~~~f~~~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~  264 (446)
T 2x3l_A          187 HFGLQGFPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTY  264 (446)
T ss_dssp             TTTSTTSCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHC
T ss_pred             hhccCCCCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence             3222321222222  36777655  98877677899998877654  22211 1122334566666665556665532 


Q ss_pred             --hHHHHH-------HHhCCCCcceecc-cceeEEEEec-CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHH
Q 013008          365 --PAFLAS-------KLARNPHVKDVRG-LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD  433 (451)
Q Consensus       365 --~~~~~~-------~~~~~~~~~~v~g-~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~  433 (451)
                        +++.++       +.+.  .+..+.. .+..+++.+. ....++.+.|.++||.+...+. +.+|++++..+|++++ 
T Consensus       265 g~~~~~~~~~~l~~~l~~~--g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~-~~iRi~~~~~~t~e~i-  340 (446)
T 2x3l_A          265 DSTLFFAKRAQLIECLENK--GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADD-YQALAILPLWHHDDTY-  340 (446)
T ss_dssp             CCHHHHHHHHHHHHHHHHH--TCEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEECS-SCEEEECCCCCTTCCC-
T ss_pred             CHHHHHHHHHHHHHHHHHc--CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecCC-CEEEEEeecCCCHHHH-
Confidence              224443       2222  2221211 2345666663 4577899999999999873444 6799999998899999 


Q ss_pred             HHHHHHHHHHHHH
Q 013008          434 QAVEILCKTLPVL  446 (451)
Q Consensus       434 ~~l~~l~~~l~~~  446 (451)
                      +++++|+++++++
T Consensus       341 ~l~~aL~~~~~~~  353 (446)
T 2x3l_A          341 LFDSLLRKIEDMI  353 (446)
T ss_dssp             CHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.79  E-value=1.4e-17  Score=168.97  Aligned_cols=315  Identities=12%  Similarity=-0.040  Sum_probs=186.9

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHhhccCCC-------eEEecCCHHHHHHHHHHHHHHHhhh----
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFAD-------RVFFSNTGTEANEAAIKFARKFQRH----  181 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~e-------~v~~~~sG~eA~~~al~~a~~~~~~----  181 (451)
                      .+|.+.+++.+++......+..++  .....++.++++++++.+       .+++++||++|+..++.+++.....    
T Consensus        54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~  133 (452)
T 2dgk_A           54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA  133 (452)
T ss_dssp             CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            568899998887765322211121  122567777788888732       3899999999999999987642210    


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCC
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG  260 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G  260 (451)
                      .+..  ..++.||+.+  .|.....+....|.....   .+..+ +..    -|+++|+++|++ ++++|++...+++.|
T Consensus       134 ~G~~--~~~~~vi~~~--~h~~~~~~~~~~G~~v~~---v~~~~~~~~----~d~~~l~~~i~~-~t~~v~~~~~~n~tG  201 (452)
T 2dgk_A          134 AGKP--TDKPNLVCGP--VQICWHKFARYWDVELRE---IPMRPGQLF----MDPKRMIEACDE-NTIGVVPTFGVTYTG  201 (452)
T ss_dssp             TTCC--CSCCEEEESS--CCHHHHHHHHHTTCEEEE---CCCBTTBCS----CCHHHHHHHCCT-TEEEEECBBSCTTTC
T ss_pred             cCCC--CCCcEEEECC--CcHHHHHHHHHcCceEEE---EecCCCCCe----ECHHHHHHHHhh-CCEEEEEEcCCcCCc
Confidence            0000  0135677766  665554444433322111   11111 111    289999999975 466666665555677


Q ss_pred             ccccCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--ccccccccccCC-Ccceeeec--ccccCCccccccccc
Q 013008          261 IYSATKEFLQFLRDACDDA------GALLVFDEVQCGLGR--TGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVT  329 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr--~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~  329 (451)
                      .+.+    +++|.++|++|      |+++++|++|.++..  ........ +.+ ..|+++++  |.+.+|+++|+++++
T Consensus       202 ~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~hK~~~~~~~~G~~~~~  276 (452)
T 2dgk_A          202 NYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD-FRLPRVKSISASGHKFGLAPLGCGWVIWR  276 (452)
T ss_dssp             BBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEEETTTTTCCCSSCEEEEES
T ss_pred             ccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhh-cCCCCCcEEEECcccccCCCCCeEEEEEc
Confidence            7766    99999999996      999999999986532  01110111 111 35666554  866567899999986


Q ss_pred             H-HHH-hhcc--CCCcc---------CCCCC-cHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCcceec
Q 013008          330 E-KVA-SAIN--YGDHG---------STFAG-SPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKDVR  382 (451)
Q Consensus       330 ~-~i~-~~~~--~~~~~---------~t~~~-~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~v~  382 (451)
                      + +++ +.+.  +....         ++-.+ +.+++.+++..+.   .+.+   .++          .++.++.+..+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~  353 (452)
T 2dgk_A          277 DEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG---REGYTKVQNASYQVAAYLADEIAKLGPYEFIC  353 (452)
T ss_dssp             SGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred             CHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEec
Confidence            4 333 4331  11111         11111 2334444444332   1211   111          334555443332


Q ss_pred             -----ccceeEEEEecC------ChHHHHHHHHHCCceeee----cCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          383 -----GLGLIIGIEFDV------SATPVVDACRDSGLLVLT----AGK--GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       383 -----g~G~~~~~~~~~------~~~~~~~~l~~~Gv~~~~----~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                           ....++.|.+..      +..++.+.|.++|+.+..    ...  ...+|+++...+|+|+++++++.|++++++
T Consensus       354 ~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~  433 (452)
T 2dgk_A          354 TGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY  433 (452)
T ss_dssp             ECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence                 244566666642      237899999999996542    211  247999998888999999999999999988


Q ss_pred             Hhhc
Q 013008          446 LDSN  449 (451)
Q Consensus       446 ~~~~  449 (451)
                      ++..
T Consensus       434 ~~~~  437 (452)
T 2dgk_A          434 LSDH  437 (452)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            7654

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.78  E-value=1.8e-18  Score=169.79  Aligned_cols=297  Identities=10%  Similarity=0.000  Sum_probs=180.9

Q ss_pred             CCCHHHHHHHHHHHhhcc---cc-cCC---CC--CHHHHHHHHHHhhccCC---CeEEecCCH-HHHHHHHHHHHHHHhh
Q 013008          114 HGDADWIKAVVDQANVLT---HV-SNM---YY--SIPQIELAKRLVACSFA---DRVFFSNTG-TEANEAAIKFARKFQR  180 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~---~~-~~~---~~--~~~~~~l~~~l~~~~~~---e~v~~~~sG-~eA~~~al~~a~~~~~  180 (451)
                      ..+|.|++++.+.+++..   .. +..   +.  .....+++++++++++.   +++++++|+ ++|+..++..+.... 
T Consensus        13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~-   91 (360)
T 1w23_A           13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKG-   91 (360)
T ss_dssp             CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTT-
T ss_pred             CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCC-
Confidence            367999999999876431   00 000   11  11367889999998873   489999988 999999988654210 


Q ss_pred             hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHH-hcCCCCeEEEEEccccCCC
Q 013008          181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPGKTAAVFVEPIQGEG  259 (451)
Q Consensus       181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~aavi~ep~~~~~  259 (451)
                             ++++.|+...++|+. ... ....| ...   +.+..+..   .+.|+++|++ ++. .++++|+++.+++++
T Consensus        92 -------~~g~~vi~~~~~~~~-~~~-~~~~g-~~~---~v~~~~~~---~~~d~~~l~~~~i~-~~~k~v~~~~~~npt  154 (360)
T 1w23_A           92 -------TIGNYVLTGSWSEKA-LKE-AKLLG-ETH---IAASTKAN---SYQSIPDFSEFQLN-ENDAYLHITSNNTIY  154 (360)
T ss_dssp             -------CEEEEEECSHHHHHH-HHH-HHTTS-EEE---EEEECGGG---TSCSCCCGGGCCCC-TTEEEEEEESEETTT
T ss_pred             -------CcccEEEecchhHHH-HHH-HHHhC-CeE---Eeeccccc---CcCCccchHhhccC-CCCCEEEEeCCCCCc
Confidence                   024445544443322 111 11112 110   01111000   0136677888 775 367888888777777


Q ss_pred             CccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhcc
Q 013008          260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAIN  337 (451)
Q Consensus       260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~  337 (451)
                      |.+.+         +|+++||+++|+||+|+.+...   .....+    |++  +++|.++.. ++|++++++++++.+.
T Consensus       155 G~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~  217 (360)
T 1w23_A          155 GTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKV  217 (360)
T ss_dssp             TEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSCT-TCEEEEEEHHHHCSCC
T ss_pred             ceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCCC-CcEEEEEcHHHHhhcc
Confidence            87543         2344899999999999754322   111121    555  566999742 4899999999888775


Q ss_pred             CCC-----------ccCCC-CCcHHHHHHHHHHHHHhcCh----HHHHH----------HHhCCCCc-cee--cc-c-ce
Q 013008          338 YGD-----------HGSTF-AGSPLVCNAAIAVLDKISNP----AFLAS----------KLARNPHV-KDV--RG-L-GL  386 (451)
Q Consensus       338 ~~~-----------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~----------~~~~~~~~-~~v--~g-~-G~  386 (451)
                      +..           ...++ +.+..+++++.++++.+.+.    ...++          .+++++.+ ...  .. . +.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~  297 (360)
T 1w23_A          218 EQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLM  297 (360)
T ss_dssp             TTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSS
T ss_pred             cCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCc
Confidence            421           11222 34566667777777765322    11111          33445522 211  21 2 45


Q ss_pred             eEEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          387 IIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       387 ~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ++++.+..  ...++.+.|.++||.+.++.. .+.+|++++...+++++++++++|++++++
T Consensus       298 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          298 NVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            78887742  346788889999999977642 367999999888999999999999988764

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.78  E-value=5.5e-17  Score=166.76  Aligned_cols=320  Identities=13%  Similarity=0.008  Sum_probs=187.1

Q ss_pred             CCCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHhhccCCC-------eEEecCCHHHHHHHHHHHHHHHhhh-c-
Q 013008          114 HGDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFAD-------RVFFSNTGTEANEAAIKFARKFQRH-S-  182 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~e-------~v~~~~sG~eA~~~al~~a~~~~~~-~-  182 (451)
                      ..+|.+.+++.+.+......+..++  .....++.++++++++.+       ...+++||++|+..++.+++..... + 
T Consensus        67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~  146 (502)
T 3hbx_A           67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK  146 (502)
T ss_dssp             CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence            3689999999887765322211111  122456777788888744       3457999999999999877643210 0 


Q ss_pred             --CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCCHHHHHHhcCCCCeEEEEEccccCCC
Q 013008          183 --NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG  259 (451)
Q Consensus       183 --~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~  259 (451)
                        +..  ..++.||+.+++|..+ ..+....|.....   .+..++ ..    -|+++|++++++ ++.+|++...+++.
T Consensus       147 ~~G~~--~~~~~vi~~~~~h~s~-~~~~~~~G~~~~~---v~~~~~~~~----~d~~~l~~~i~~-~t~~v~~~~~~n~t  215 (502)
T 3hbx_A          147 AEGKP--VDKPNIVTGANVQVCW-EKFARYFEVELKE---VKLSEGYYV----MDPQQAVDMVDE-NTICVAAILGSTLN  215 (502)
T ss_dssp             HTTCC--CSCCEEEEETTCCHHH-HHHHHHTTCEEEE---ECCBTTBCS----CCHHHHHHHCCT-TEEEEEEEBSCTTT
T ss_pred             hcCCC--CCCcEEEEcCCchHHH-HHHHHHcCceeEE---EecCCCcCc----CCHHHHHHHHhh-CCEEEEEecCCCCC
Confidence              100  0123777777765443 3333332221100   111111 00    189999999976 45666655555555


Q ss_pred             CccccCHHHHHHHHHHHHHh------CCEEEEeccccCCCc---ccc-cccccccCCCcceeee--cccccCCccccccc
Q 013008          260 GIYSATKEFLQFLRDACDDA------GALLVFDEVQCGLGR---TGY-LWAHEHYGIFPDIMTL--AKPLAGGLPIGAAL  327 (451)
Q Consensus       260 G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr---~G~-~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~  327 (451)
                      |.+.+    +++|.++|++|      |++|++|++|.++..   .+. .+.+..  ...|++++  .|.+.++..+|+++
T Consensus       216 G~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~l~~p~g~G~~~  289 (502)
T 3hbx_A          216 GEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKYGLVYAGIGWVI  289 (502)
T ss_dssp             CCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCCSSCEEEE
T ss_pred             CcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccccCCCCCeEEEE
Confidence            77766    99999999999      999999999976531   111 111111  13566544  47776667888877


Q ss_pred             cc-HHHH-hhcc--CCCcc-----CC--CCCcHHHHHHHHHHHHHhcChHHHH---H----------HHhCCCCcceecc
Q 013008          328 VT-EKVA-SAIN--YGDHG-----ST--FAGSPLVCNAAIAVLDKISNPAFLA---S----------KLARNPHVKDVRG  383 (451)
Q Consensus       328 ~~-~~i~-~~~~--~~~~~-----~t--~~~~~~~~aaa~aal~~~~~~~~~~---~----------~~~~~~~~~~v~g  383 (451)
                      .+ ++++ +.+.  .....     .+  ++.+.....+..++++.+..+++.+   +          .++.++.+..+..
T Consensus       290 ~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~  369 (502)
T 3hbx_A          290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSK  369 (502)
T ss_dssp             ESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC
T ss_pred             EeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            64 4433 2221  11111     11  2222223333334444332222211   1          3445554443332


Q ss_pred             --cceeEEEEec----CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008          384 --LGLIIGIEFD----VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS  450 (451)
Q Consensus       384 --~G~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~  450 (451)
                        ...++.|.+.    ....++.+.|.++|+++.....      ...+|+++...+|+|+++.+++.|+++++++++.|
T Consensus       370 ~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~~~  448 (502)
T 3hbx_A          370 DEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELP  448 (502)
T ss_dssp             SSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence              4556677763    2345899999999998653211      25799999999999999999999999999887654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.78  E-value=3.8e-17  Score=168.66  Aligned_cols=289  Identities=16%  Similarity=0.091  Sum_probs=173.7

Q ss_pred             HHHHHHHHhhccCC--CeEEecCCHHHHHHHHHHHHHHHhh----hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008          142 QIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQR----HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH  215 (451)
Q Consensus       142 ~~~l~~~l~~~~~~--e~v~~~~sG~eA~~~al~~a~~~~~----~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~  215 (451)
                      ..++.++++++++.  +.++|++||++|+..|+++++.+..    ..+... .++..|++.+.. |.+...+....+...
T Consensus       150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~-~~~~~vl~s~~~-h~s~~~~~~~~g~g~  227 (515)
T 2jis_A          150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRT-LPPLALFTSKEC-HYSIQKGAAFLGLGT  227 (515)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGG-SCCEEEEEETTS-CTHHHHHHHHTTSCG
T ss_pred             HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccc-cCCeEEEECCCc-cHHHHHHHHHcCCCC
Confidence            56677788888874  5899999999999999999875421    000000 001255555544 555544444332210


Q ss_pred             cCCCCcCCCCCeeEeeCC-----CHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEE
Q 013008          216 YRSPFEPVMPGVNFVEYG-----NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF  285 (451)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~  285 (451)
                               ..+..+|.+     |+++|+++|++     .++++|+++..+++.|.+.+    +++|.++|++||+++|+
T Consensus       228 ---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~v  294 (515)
T 2jis_A          228 ---------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHV  294 (515)
T ss_dssp             ---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEE
T ss_pred             ---------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEE
Confidence                     123334432     79999999863     14788888877777887766    99999999999999999


Q ss_pred             eccccCCCcccccccccccCC-Ccceeee--cccccCCcccccccccHH--HHhhc----cCCC-c----------cCCC
Q 013008          286 DEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTEK--VASAI----NYGD-H----------GSTF  345 (451)
Q Consensus       286 DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~~--i~~~~----~~~~-~----------~~t~  345 (451)
                      |++|+++......+.....++ .+|++++  +|.+++++++|+++++++  +++..    .+.. .          .+++
T Consensus       295 D~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~  374 (515)
T 2jis_A          295 DAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK  374 (515)
T ss_dssp             EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGG
T ss_pred             ehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCC
Confidence            999987654443333233355 6898877  799887678999988765  65531    1110 0          0001


Q ss_pred             ------CCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec-ccceeEEEEe-cC------Ch-----
Q 013008          346 ------AGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR-GLGLIIGIEF-DV------SA-----  396 (451)
Q Consensus       346 ------~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~-g~G~~~~~~~-~~------~~-----  396 (451)
                            ....+.+.++++++....-++..++          .++..|.+..+. .....+.|.+ ..      ..     
T Consensus       375 ~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~  454 (515)
T 2jis_A          375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHE  454 (515)
T ss_dssp             CSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHH
T ss_pred             CCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHH
Confidence                  1123444444444431100111111          334455443222 2223344433 11      10     


Q ss_pred             ------HHHHHHHHHCCceeee----cCCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q 013008          397 ------TPVVDACRDSGLLVLT----AGKGNVVRLVP-PLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       397 ------~~~~~~l~~~Gv~~~~----~~~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                            ..+.+.|.+.|+.+..    .+..+.+|+++ +..+|++||++++++|++++++
T Consensus       455 ~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          455 RLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             HHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence                  1266778888976532    12225799999 8889999999999999987754

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.77  E-value=6e-19  Score=175.80  Aligned_cols=259  Identities=13%  Similarity=0.024  Sum_probs=159.0

Q ss_pred             HHHHHHHhhccC-------C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc----eEEEEcCCccCChhhhhhc
Q 013008          143 IELAKRLVACSF-------A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT----EFVSFTNSFHGRTMGALAL  210 (451)
Q Consensus       143 ~~l~~~l~~~~~-------~-e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~----~ii~~~~~yhg~~~~~~~~  210 (451)
                      .+|.+.++++++       . ++|++|+|+++|+..+++++..           ++|    .|++.+|+|+++.......
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~-----------~Gd~~~~~Vlv~~P~y~~~~~~~~~~  139 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS-----------LARSQPVSVVAAAPFYSTYVEETTYV  139 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH-----------TSSSSSEEEEECSSCCTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC-----------CCCCCcceEEEcCCCchhHHHHHHHc
Confidence            455555555443       4 5899999999999999997753           577    8999999998765443222


Q ss_pred             cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH-hC--CEEEEec
Q 013008          211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AG--ALLVFDE  287 (451)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g--~llI~DE  287 (451)
                       +..            +..++. |.+.++    ..++++|++...++++|.+. +     +|   |++ |+  +++|+||
T Consensus       140 -g~~------------~~~~~~-d~~~l~----~~~~k~v~l~~p~NPtG~~~-~-----~l---~~~~~~~~~~ii~De  192 (391)
T 3bwn_A          140 -RSG------------MYKWEG-DAWGFD----KKGPYIELVTSPNNPDGTIR-E-----TV---VNRPDDDEAKVIHDF  192 (391)
T ss_dssp             -CBT------------TEEEEE-ESTTCC----CCSCEEEEEESSCTTTCCCC-C-----CC---C-----CCCEEEEEC
T ss_pred             -CCe------------EEEecC-CHHHcC----CCCCEEEEECCCCCCCchhH-H-----HH---HHHhhcCCCEEEEeC
Confidence             211            111221 222222    23455665544445556544 3     23   434 66  9999999


Q ss_pred             cccCCCcccccccccccCCCcceeeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc--
Q 013008          288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--  363 (451)
Q Consensus       288 v~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--  363 (451)
                      +|.. +.. .... ...+....+.+|||.++ .|+|+||+++ ++++++.+.......+++.+++++.++.++|+...  
T Consensus       193 ~y~~-~~~-~~l~-~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~  269 (391)
T 3bwn_A          193 AYYW-PHY-TPIT-RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKET  269 (391)
T ss_dssp             TTCS-TTT-SCCC-CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-CCC-Cccc-cCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchh
Confidence            9962 211 1111 12233444568999998 6999999997 88988887643333356778999999998887531  


Q ss_pred             ------ChHHHHH--------------HHhCCCCccee--------------cccceeEEEEecCChHHHHHHHHHCCce
Q 013008          364 ------NPAFLAS--------------KLARNPHVKDV--------------RGLGLIIGIEFDVSATPVVDACRDSGLL  409 (451)
Q Consensus       364 ------~~~~~~~--------------~~~~~~~~~~v--------------~g~G~~~~~~~~~~~~~~~~~l~~~Gv~  409 (451)
                            .+.++++              .+++++.+...              +..|+++|+.+.. ...+.+.|.++||.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~gV~  348 (391)
T 3bwn_A          270 CKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE-ETDLVSELRRHKVM  348 (391)
T ss_dssp             TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS-SCCHHHHHHHTTEE
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc-HHHHHHHHHHCCEE
Confidence                  0112211              23344432211              2335578888742 23456667789999


Q ss_pred             eeecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          410 VLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       410 ~~~~~~----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +.|+..    .+.+|+++.  .+++++++++++|.+++++
T Consensus       349 v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          349 SRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKLI  386 (391)
T ss_dssp             CEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred             EccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            998631    367899765  4899999999999988764

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.76  E-value=2.6e-17  Score=167.28  Aligned_cols=278  Identities=10%  Similarity=0.028  Sum_probs=164.9

Q ss_pred             HHHHHHHHhhccCCC-eEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          142 QIELAKRLVACSFAD-RVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e-~v~~~~sG~-eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ..++.++++++++.+ .++|++||+ .++..++..++.+.         +++.||+.++.| ......+...|......+
T Consensus       135 ~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~---------~~~~vi~~~~~h-~s~~~~~~~~G~~~~~v~  204 (456)
T 2z67_A          135 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY---------GSNVVIYPYASH-KSPIKAVSFVGMNMRLVE  204 (456)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH---------CCCEEEEECCCC-HHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc---------CCCEEEEECCCc-HHHHHHHHHcCCCceEEE
Confidence            566888899988843 399999999 57777777765432         255678788854 444343333332211100


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhc-C---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLI-Q---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT  295 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l-~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~  295 (451)
                      ..+...+..    .|+++|+++| +   ..++.+|++...+++.|.+.+    +++|.++|++||+++|+||+|.++. .
T Consensus       205 ~~~~~~~~~----~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~  275 (456)
T 2z67_A          205 TVLDGDRVY----VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-N  275 (456)
T ss_dssp             CEEETTEEE----CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-H
T ss_pred             EeccCCCCC----cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-H
Confidence            000011111    2899999999 4   235666655555556777766    9999999999999999999997652 2


Q ss_pred             cc-cccccccCCCcceeee--cccccCCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHH---H
Q 013008          296 GY-LWAHEHYGIFPDIMTL--AKPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF---L  368 (451)
Q Consensus       296 G~-~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~---~  368 (451)
                      |. ..........+|++++  +|.+++++++|++++ ++++++.+.+...+.. ++++  ..++.+++..+..+.+   .
T Consensus       276 g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~-~~~~--~~~~~aal~~l~~~~~~~~~  352 (456)
T 2z67_A          276 YYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA-SATP--VVNTLVSLLSMGSKNYLELV  352 (456)
T ss_dssp             HHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB-CSHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC-CCCH--HHHHHHHHHHHHHHHHHHHH
Confidence            21 1111111115777755  698777788999999 5778777754333222 2232  2223333333222211   1


Q ss_pred             HH----------HHhCCC---CcceecccceeEEEEe--cCChHHHHHHHHHCCc---eee------------ecCCCCE
Q 013008          369 AS----------KLARNP---HVKDVRGLGLIIGIEF--DVSATPVVDACRDSGL---LVL------------TAGKGNV  418 (451)
Q Consensus       369 ~~----------~~~~~~---~~~~v~g~G~~~~~~~--~~~~~~~~~~l~~~Gv---~~~------------~~~~~~~  418 (451)
                      ++          .++.++   .+..+.+. .++++.+  +....++.+.|.++|+   -+.            ... .+.
T Consensus       353 ~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~-~~~  430 (456)
T 2z67_A          353 KNQKNSKKLLDELLNDLSKKTGGKFLDVE-SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYT-HDY  430 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCBCCCC-CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCS-CCE
T ss_pred             HHHHHHHHHHHHHHHhcccccCCEecCCC-CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccC-cch
Confidence            11          122221   12112233 4555666  3324678999999885   232            111 257


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          419 VRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       419 iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +|++++..+|+|++|+++++|++++
T Consensus       431 vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          431 IVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             hhhhhhcCCCHHHHHHHHHHHHHHh
Confidence            9999998899999999999998764

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.75  E-value=1.5e-18  Score=174.92  Aligned_cols=312  Identities=12%  Similarity=-0.002  Sum_probs=184.9

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhh-cccc--cC--C-C---CCHHHHHHHHHHhhcc----CCCeEEecC
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHV--SN--M-Y---YSIPQIELAKRLVACS----FADRVFFSN  162 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~--~~--~-~---~~~~~~~l~~~l~~~~----~~e~v~~~~  162 (451)
                      ..+..|||..+..  .++ .++.+.+++.+.+.. ..+.  +.  . +   ..+.+..+++.+.+..    ..++|++++
T Consensus        54 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~  130 (427)
T 2hox_A           54 IQGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV  130 (427)
T ss_dssp             CTTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred             CCCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence            3456788877665  232 345677787776632 1111  11  1 1   1222444555444322    267999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhc
Q 013008          163 TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI  242 (451)
Q Consensus       163 sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l  242 (451)
                      |+++|+..+++++..... ..+  .++++.|++.+|+|.++.......+.. ..            ... .|+++|++++
T Consensus       131 G~~~al~~~~~~l~~~~~-~~~--~~~Gd~Vlv~~P~y~~~~~~~~~~g~~-~~------------~~~-~d~~~l~~~~  193 (427)
T 2hox_A          131 GVTQLIHGLVISLSPNMT-ATP--DAPESKVVAHAPFYPVFREQTKYFDKK-GY------------VWA-GNAANYVNVS  193 (427)
T ss_dssp             HHHHHHHHHHHHHSCCTT-TCT--TSCCEEEEECSSCCHHHHHHHHHSCBT-TE------------EEE-EEGGGGTTCS
T ss_pred             CHHHHHHHHHHHHhhccc-ccc--CCCCCEEEEeCCCcccHHHHHHHcCCe-ee------------eec-CCHHHHHHhh
Confidence            999999999987610000 000  026899999999998765444332211 10            011 1678888877


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCc
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGL  321 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~  321 (451)
                      .+ ++++|++...++++|.+. + +.       |+  ++..|.||.+-+  ..-...... .+...-+.+|||.++ .|+
T Consensus       194 ~~-~~k~v~l~~p~NPtG~~~-~-~~-------l~--~~~~i~d~~~~~--~~~s~~~~~-~~~~i~~~S~SK~~g~~G~  258 (427)
T 2hox_A          194 NP-EQYIEMVTSPNNPEGLLR-H-AV-------IK--GCKSIYDMVYYW--PHYTPIKYK-ADEDILLFTMSKFTGHSGS  258 (427)
T ss_dssp             CG-GGEEEEEESSCTTTCCCC-C-CS-------ST--TCEEEEECTTCS--TTTSCCCSC-BCCSEEEEEHHHHTSCGGG
T ss_pred             cC-CceEEEEcCCCCCccccc-H-HH-------Hc--CCCEEEeecccC--CCCCccccC-CCceEEEEeChhcCCCCCc
Confidence            64 455555544445555544 4 42       22  566788887632  000111111 233333458899998 689


Q ss_pred             ccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc---------ChHHH--------HH------HHhCCCC
Q 013008          322 PIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---------NPAFL--------AS------KLARNPH  377 (451)
Q Consensus       322 ~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---------~~~~~--------~~------~~~~~~~  377 (451)
                      |+||+++ ++++++.+.......+++.+++++.++.++|+...         .++++        ++      .+++++.
T Consensus       259 RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  338 (427)
T 2hox_A          259 RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDR  338 (427)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            9999999 58998887654334456778898888888887421         11111        11      2334432


Q ss_pred             cce---------------ecccceeEEEEecCChHHHHHHHH-HCCceeeecCC----CCEEEEeCCCCCCHHHHHHHHH
Q 013008          378 VKD---------------VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGK----GNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       378 ~~~---------------v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~----~~~iri~~~~~~t~e~i~~~l~  437 (451)
                      +..               ....|+++|+.+..+..++++.|+ ++||.+.|+..    .+.+|+++.  .++|+++++++
T Consensus       339 ~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~  416 (427)
T 2hox_A          339 FSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMY  416 (427)
T ss_dssp             EECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHH
T ss_pred             ccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHH
Confidence            221               112378888888544556777776 78999998631    367999765  48999999999


Q ss_pred             HHHHHHH
Q 013008          438 ILCKTLP  444 (451)
Q Consensus       438 ~l~~~l~  444 (451)
                      +|.++++
T Consensus       417 ~l~~~~~  423 (427)
T 2hox_A          417 YLKDMVK  423 (427)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998874

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.75  E-value=2.3e-17  Score=162.19  Aligned_cols=294  Identities=10%  Similarity=0.024  Sum_probs=178.8

Q ss_pred             CCCHHHHHHHHHHHhhccc-c------cCCCC--CHHHHHHHHHHhhccCCC---e-EEecCCHHHHHHHHHHHHHHHhh
Q 013008          114 HGDADWIKAVVDQANVLTH-V------SNMYY--SIPQIELAKRLVACSFAD---R-VFFSNTGTEANEAAIKFARKFQR  180 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~~-~------~~~~~--~~~~~~l~~~l~~~~~~e---~-v~~~~sG~eA~~~al~~a~~~~~  180 (451)
                      ..+|+|++++.+.+.+... +      ...+.  .+...+++++++++++.+   + +++++||++|+..+++.+.    
T Consensus        14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~----   89 (362)
T 2c0r_A           14 ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL----   89 (362)
T ss_dssp             CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcC----
Confidence            3789999999988754311 0      01111  123568888899888732   5 4678999999999998654    


Q ss_pred             hcCCCCCCCCceEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCC---CHHHHHHhcCCCCeEEEEEcccc
Q 013008          181 HSNPDSKEPATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYG---NIEATRKLIQPGKTAAVFVEPIQ  256 (451)
Q Consensus       181 ~~~~~~~~~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~aavi~ep~~  256 (451)
                             .++|+||+.++.+++... ......|....    .+..+..   .++   |+++++  +. .++++|++.+++
T Consensus        90 -------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~----v~~~~~~---~~~~~~~~~~~~--i~-~~t~~v~~~~~~  152 (362)
T 2c0r_A           90 -------KEGQTANYVMTGSWASKALKEAKLIGDTHV----AASSEAS---NYMTLPKLQEIQ--LQ-DNAAYLHLTSNE  152 (362)
T ss_dssp             -------CTTCEEEEEECSHHHHHHHHHHHHHSCEEE----EEECGGG---TTCSCCCGGGCC--CC-TTEEEEEEESEE
T ss_pred             -------CCCCeEEEEecCcHhHHHHHHHHHhCCeEE----Eeccccc---ccccCCCHHHcc--cC-CCcCEEEEeCCc
Confidence                   157889988877655421 11111121110    0100000   011   333332  43 367777777667


Q ss_pred             CCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccC-CcccccccccHHHH
Q 013008          257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVTEKVA  333 (451)
Q Consensus       257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~~~i~  333 (451)
                      +++|....+   +++|      ||+++|+||+|. +|..  .....  ..  |++  +++|.+|. |  +|+++++++++
T Consensus       153 n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~--~~~~~--~~--d~~~~s~~K~~g~~G--~G~l~~~~~~~  214 (362)
T 2c0r_A          153 TIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR--PFDLN--QF--GLVYAGAQKNLGPSG--VTVVIVREDLV  214 (362)
T ss_dssp             TTTTEECSS---CCCC------TTSCEEEECTTT-TTSS--CCCGG--GC--SEEEEETTTTTCCSS--CEEEEEEGGGS
T ss_pred             Cccceeccc---cccc------CCCEEEEEChhh-ccCC--ccchh--HC--cEEEEeccccccCcC--cEEEEEcHHHH
Confidence            777764222   4444      899999999996 3221  11111  12  554  67899973 4  89999999988


Q ss_pred             hhccCCC------------ccCCCCCcHHHHHHHHHHHHHhcCh----HHHHH----------HHhCCCCc-cee----c
Q 013008          334 SAINYGD------------HGSTFAGSPLVCNAAIAVLDKISNP----AFLAS----------KLARNPHV-KDV----R  382 (451)
Q Consensus       334 ~~~~~~~------------~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~----------~~~~~~~~-~~v----~  382 (451)
                      +.+.+..            ....++.++.+++++.++|+.+.+.    ...++          .++.++.+ ...    .
T Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~  294 (362)
T 2c0r_A          215 AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDS  294 (362)
T ss_dssp             SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGG
T ss_pred             hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHH
Confidence            7765310            0223456778888888888865432    22222          22334311 211    1


Q ss_pred             ccceeEEEEec--CChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          383 GLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       383 g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..+.++++.+.  ....++++.|.++||.+.++.. .+.+|+++...+++|+++++++.|++++++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          295 RSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             BCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            12445666653  2356799999999998876532 2469999888889999999999999987653

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.75  E-value=1.5e-17  Score=170.17  Aligned_cols=304  Identities=15%  Similarity=0.109  Sum_probs=178.0

Q ss_pred             CCCHHHHHHHHHHHhhcc-cccC---CC-CCHH----HHHHHHHHhhccCCC-----eEEecCCHHHHHHHHHHHHHHHh
Q 013008          114 HGDADWIKAVVDQANVLT-HVSN---MY-YSIP----QIELAKRLVACSFAD-----RVFFSNTGTEANEAAIKFARKFQ  179 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~-~~~~---~~-~~~~----~~~l~~~l~~~~~~e-----~v~~~~sG~eA~~~al~~a~~~~  179 (451)
                      ..+|.|++|+.+.+.+.. .++.   .+ ....    ...+.++++++++.+     ..+.++||++|+..+++++.   
T Consensus        55 ~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all---  131 (483)
T 1rv3_A           55 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV---  131 (483)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT---
T ss_pred             CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhc---
Confidence            368999999998876521 1111   11 2222    344557888888743     22455567799999888654   


Q ss_pred             hhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC--------CCHHHHHHhcCCCCeEEEE
Q 013008          180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--------GNIEATRKLIQPGKTAAVF  251 (451)
Q Consensus       180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~~le~~l~~~~~aavi  251 (451)
                              .++|+||+.++.|+++......... ....  +  ....+..+++        -|+++|++++...++++|+
T Consensus       132 --------~pGD~Vl~~~~~~~~~~~~~~~~~~-~~v~--~--~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi  198 (483)
T 1rv3_A          132 --------EPHGRIMGLDLPDGGHLTHGFMTDK-KKIS--A--TSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII  198 (483)
T ss_dssp             --------CTTCEEEEECGGGTCCGGGCCBCSS-CBCS--H--HHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEE
T ss_pred             --------CCCCEEEEecCccCcCcchhhhhcc-cCcc--c--ccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEE
Confidence                    2689999999988766422110000 0000  0  0000111111        2899999999733567777


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCccccc-ccccccCCCcceee--ecccccCCccccccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYL-WAHEHYGIFPDIMT--LAKPLAGGLPIGAAL  327 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~-~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~  327 (451)
                      + ...+++ .+.+    +++|+++|++||++||+||+|. |+-..|.. ....    ..|+++  ++|+|+ |++.|+++
T Consensus       199 ~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~K~l~-GprgG~i~  267 (483)
T 1rv3_A          199 A-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLR-GCRAGMIF  267 (483)
T ss_dssp             E-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGC-CCSCEEEE
T ss_pred             E-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCcccCC-CCCceEEE
Confidence            7 444444 4444    9999999999999999999985 33111211 1111    356664  569985 56779999


Q ss_pred             ccHH---------------HHhhccCCCccCCCC-CcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCc
Q 013008          328 VTEK---------------VASAINYGDHGSTFA-GSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHV  378 (451)
Q Consensus       328 ~~~~---------------i~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~  378 (451)
                      ++++               +.+.+......+..+ .+...+++..++++.+..+.+   .++          .++.. .+
T Consensus       268 ~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  346 (483)
T 1rv3_A          268 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GY  346 (483)
T ss_dssp             EECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             EcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            8864               223222111111122 234445555567766544322   221          12222 22


Q ss_pred             ceeccc--ceeEEEEec---CChHHHHHHHHHCCceee----ecCC----CCEEEEeCCCCCC----HHHHHHHHHHHHH
Q 013008          379 KDVRGL--GLIIGIEFD---VSATPVVDACRDSGLLVL----TAGK----GNVVRLVPPLIIS----EQELDQAVEILCK  441 (451)
Q Consensus       379 ~~v~g~--G~~~~~~~~---~~~~~~~~~l~~~Gv~~~----~~~~----~~~iri~~~~~~t----~e~i~~~l~~l~~  441 (451)
                      ..+.+.  ..+.++++.   .+..++.+.|.+.||.+.    |+..    .+.+||+++..+|    ++|+++++++|.+
T Consensus       347 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~  426 (483)
T 1rv3_A          347 KIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHR  426 (483)
T ss_dssp             EEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             EeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHH
Confidence            222221  245666763   356778888888999988    6431    2579998876555    9999999999999


Q ss_pred             HHHH
Q 013008          442 TLPV  445 (451)
Q Consensus       442 ~l~~  445 (451)
                      +++.
T Consensus       427 ~l~~  430 (483)
T 1rv3_A          427 GIEL  430 (483)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.75  E-value=7.6e-17  Score=159.72  Aligned_cols=298  Identities=14%  Similarity=0.081  Sum_probs=183.2

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH-hhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL-VACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE  192 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~  192 (451)
                      ..|++.+++.+.++.....   .+.+...+|++++ +++++ .+.+++++||++|+..+++.+.  .        .++|+
T Consensus        14 ~~~~i~~a~~~~~~~~~~~---~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~--~--------~~Gd~   80 (377)
T 3ju7_A           14 PVIEYLDELKEIDASHIYT---NYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKK--R--------KKGKY   80 (377)
T ss_dssp             CGGGGHHHHHHHHHHTCCS---SSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHS--C--------TTCCE
T ss_pred             CcHHHHHHHHHHHHcCCcc---cCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCE
Confidence            4577899999988764221   1245578999999 99999 8899999999999999998651  1        16899


Q ss_pred             EEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC--eEEEEEccccCCCCccccCHHHHH
Q 013008          193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK--TAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       193 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      ||+.+++|++........+....+    .+..++..   .-|+++|++++...+  +++|+  |++ ..|...+    ++
T Consensus        81 Vi~~~~~~~~~~~~~~~~G~~~~~----v~~~~~~~---~~d~~~l~~~i~~~~~~tk~v~--~~~-~~G~~~~----~~  146 (377)
T 3ju7_A           81 ALMPSFTFPATPLAAIWCGLEPYF----IDISIDDW---YMDKTVLWDKIEELKEEVAIVV--PYA-TFGSWMN----LE  146 (377)
T ss_dssp             EEEESSSCTHHHHHHHHTTCEEEE----ECBCTTTC---SBCHHHHHHHHHHHGGGEEEEC--CBC-GGGBCCC----CH
T ss_pred             EEECCCCcHHHHHHHHHcCCEEEE----EecCCccC---CcCHHHHHHHHhcCCCCceEEE--EEC-CCCCccC----HH
Confidence            999999998765433222211111    11111100   018999999883223  67776  333 3455554    89


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCccccccccccc-CCCcceeeec----ccccCCcccccccc-cHHHHhhccCCC----
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY-GIFPDIMTLA----KPLAGGLPIGAALV-TEKVASAINYGD----  340 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~~pdi~t~s----K~lg~G~~iG~v~~-~~~i~~~~~~~~----  340 (451)
                      +|.++|+ ||+++|+|++|+ +|..   +..... +...|+.++|    |.+++| ..|+++. ++++.+.++...    
T Consensus       147 ~i~~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~  220 (377)
T 3ju7_A          147 EYEELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGF  220 (377)
T ss_dssp             HHHHHHH-TTCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTB
T ss_pred             HHHHHHh-cCCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCC
Confidence            9999999 999999999996 4322   111122 1224565554    999875 5566665 466666553211    


Q ss_pred             --------ccCCCCCcHHHHHHHHHHHHHhcCh-----HHH---HHHHhCCCCc--ceecccc-----eeEEEEecC--C
Q 013008          341 --------HGSTFAGSPLVCNAAIAVLDKISNP-----AFL---ASKLARNPHV--KDVRGLG-----LIIGIEFDV--S  395 (451)
Q Consensus       341 --------~~~t~~~~~~~~aaa~aal~~~~~~-----~~~---~~~~~~~~~~--~~v~g~G-----~~~~~~~~~--~  395 (451)
                              .+..+..+++.++.+++.++.+...     ...   .+.++.++.+  ......+     .++.+.++.  .
T Consensus       221 ~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T 3ju7_A          221 DTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVR  300 (377)
T ss_dssp             CTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSC
T ss_pred             CCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhh
Confidence                    1234556788888787777644221     011   1123334421  1111111     123344332  3


Q ss_pred             hHHHHHHHHHCCceeeecCC------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTAGK------------------------GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~~~------------------------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..++.+.|.++||.+.....                        ...+|+.+....|++|++++++.|.+++..
T Consensus       301 ~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          301 NKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             HHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            77899999999998754210                        135888888889999999999999988764

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.74  E-value=3e-17  Score=167.14  Aligned_cols=303  Identities=15%  Similarity=0.150  Sum_probs=166.1

Q ss_pred             CCHHHHHHHHHHHhh-cccccC--CC--CCHHHHHHH----HHHhhccCCCe-----EEecCCHHHHHHHHHHHHHHHhh
Q 013008          115 GDADWIKAVVDQANV-LTHVSN--MY--YSIPQIELA----KRLVACSFADR-----VFFSNTGTEANEAAIKFARKFQR  180 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~-~~~~~~--~~--~~~~~~~l~----~~l~~~~~~e~-----v~~~~sG~eA~~~al~~a~~~~~  180 (451)
                      .+|+|++|+.+.+.+ +..++.  .+  ..+...+|+    ++++++++.+.     .++++||++||..++..+.    
T Consensus        66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~----  141 (490)
T 2a7v_A           66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL----  141 (490)
T ss_dssp             CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc----
Confidence            589999999887643 322211  11  122222344    88899998553     4566799999999998664    


Q ss_pred             hcCCCCCCCCceEEEEcCCccCChhh-------hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          181 HSNPDSKEPATEFVSFTNSFHGRTMG-------ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       181 ~~~~~~~~~~~~ii~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                             .++|+||+.++.|.|+...       .+.+++.......+ +..+...   ..|+++|++++...++++|++.
T Consensus       142 -------~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~-~vd~~~~---~iD~d~le~~l~~~~~klIi~~  210 (490)
T 2a7v_A          142 -------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY-KLNPKTG---LIDYNQLALTARLFRPRLIIAG  210 (490)
T ss_dssp             -------CSCEECCC-------------------------------C-CBCTTTC---SBCHHHHHHHHHHHCCSEEEEC
T ss_pred             -------CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEec-ccccccC---CcCHHHHHHHHhhcCCcEEEEc
Confidence                   2799999999887543211       11122211000000 1111110   1389999999863334566654


Q ss_pred             -cccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCccccc-ccccccCCCccee--eecccccCCcccccccc
Q 013008          254 -PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYL-WAHEHYGIFPDIM--TLAKPLAGGLPIGAALV  328 (451)
Q Consensus       254 -p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~-~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~  328 (451)
                       |.++.   ..+    +++|+++|++||++||+|++|. |+...|.. ..+.    ..|++  +++|+|+ |.+.|++++
T Consensus       211 ~s~~~~---~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~-Gp~GG~i~~  278 (490)
T 2a7v_A          211 TSAYAR---LID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLR-GARSGLIFY  278 (490)
T ss_dssp             CSSCCS---CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGC-SCSCEEEEE
T ss_pred             CCCCCC---ccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCc-cccchheee
Confidence             44432   233    8999999999999999999974 33122221 1111    24665  5679996 456788888


Q ss_pred             cHH---------------HHhhccCCCccCCCCC-cHHHHHHHHHHHHHhcChH---HHHH-------H---HhCCCCcc
Q 013008          329 TEK---------------VASAINYGDHGSTFAG-SPLVCNAAIAVLDKISNPA---FLAS-------K---LARNPHVK  379 (451)
Q Consensus       329 ~~~---------------i~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~~~---~~~~-------~---~~~~~~~~  379 (451)
                      +++               +.+.++.....++.++ ++..+++..+++.....++   +.++       +   +... .+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~  357 (490)
T 2a7v_A          279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYS  357 (490)
T ss_dssp             ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             ccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcE
Confidence            764               3333332222233333 3444444445665543322   2222       1   1222 222


Q ss_pred             eecc--cceeEEEEec---CChHHHHHHHHHCCceeeec----CC----CCEEEEeCC----CCCCHHHHHHHHHHHHHH
Q 013008          380 DVRG--LGLIIGIEFD---VSATPVVDACRDSGLLVLTA----GK----GNVVRLVPP----LIISEQELDQAVEILCKT  442 (451)
Q Consensus       380 ~v~g--~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~----~~----~~~iri~~~----~~~t~e~i~~~l~~l~~~  442 (451)
                      .+.+  ...++++++.   ....++.+.|.+.||.+...    ..    +..+|+..+    ..++++|++++++.|.++
T Consensus       358 v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~  437 (490)
T 2a7v_A          358 LVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG  437 (490)
T ss_dssp             EGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             EecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHH
Confidence            2221  2356777773   24677888888899998742    11    356999654    357899999999999998


Q ss_pred             HHH
Q 013008          443 LPV  445 (451)
Q Consensus       443 l~~  445 (451)
                      +..
T Consensus       438 l~~  440 (490)
T 2a7v_A          438 VNI  440 (490)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.73  E-value=1.9e-16  Score=162.99  Aligned_cols=315  Identities=15%  Similarity=0.025  Sum_probs=176.2

Q ss_pred             CCHHH-HHHHHHHHhhcccccCCCCCHH----HHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHh----hh
Q 013008          115 GDADW-IKAVVDQANVLTHVSNMYYSIP----QIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQ----RH  181 (451)
Q Consensus       115 ~~p~v-~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~----~~  181 (451)
                      .+|.+ .+++..++......+  ...+.    +.+++++++++++.    +.++|++||++|+..|+.+++...    ..
T Consensus       107 ~~~~~~~e~l~~~~~~~~~~~--~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~  184 (511)
T 3vp6_A          107 DIIGLAGEWLTSTANTNMFTY--EIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKT  184 (511)
T ss_dssp             CHHHHHHHHHHHHHCCCSSCT--TTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHH
T ss_pred             cHHHHHHHHHHHHhccCCCCc--ccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhh
Confidence            34444 355555555432221  22232    45566677777763    489999999999999999887531    00


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCC-----CeEEEE
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG-----KTAAVF  251 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~-----~~aavi  251 (451)
                      .+-. ..+++.|++.+.. |.+...+....+...         ..+..++.+     |+++|+++|++.     .+.+|+
T Consensus       185 ~G~~-~~~~~~v~~s~~~-H~s~~~~~~~~g~g~---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv  253 (511)
T 3vp6_A          185 KGMA-AVPKLVLFTSEQS-HYSIKKAGAALGFGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVN  253 (511)
T ss_dssp             HCGG-GSCCEEEEEETTS-CTHHHHHHHHTTSCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCcc-cCCCeEEEECCCc-hHHHHHHHHHcCCCC---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEE
Confidence            0100 0024455555554 444444444333210         012233322     899999999632     267788


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccceeee--cccccCCcccccccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALV  328 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~  328 (451)
                      ++..+++.|.+.+    |++|.++|++||+++++|++|.+.......+.....|+ ..|++++  .|.+++.+..|+++.
T Consensus       254 ~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~  329 (511)
T 3vp6_A          254 ATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILV  329 (511)
T ss_dssp             EEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEE
T ss_pred             EecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEE
Confidence            8777777787766    99999999999999999999975322221111112233 4577654  598876566777776


Q ss_pred             cH-HHHhhc-c--CCCc---c-----------CCC----CCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCC
Q 013008          329 TE-KVASAI-N--YGDH---G-----------STF----AGSPLVCNAAIAVLDKISNPAFLAS----------KLARNP  376 (451)
Q Consensus       329 ~~-~i~~~~-~--~~~~---~-----------~t~----~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~  376 (451)
                      ++ +++... .  +...   .           .++    ....+.+.+++.++..-.-++..++          .++..|
T Consensus       330 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~p  409 (511)
T 3vp6_A          330 KEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNRE  409 (511)
T ss_dssp             SSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             eCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            53 444332 1  0000   0           000    1233444444443321000111111          334556


Q ss_pred             Ccceec---ccceeEEEEecC------------------ChHHHHHHHHHCCceeeec---CC-CCEEEEeC-CCCCCHH
Q 013008          377 HVKDVR---GLGLIIGIEFDV------------------SATPVVDACRDSGLLVLTA---GK-GNVVRLVP-PLIISEQ  430 (451)
Q Consensus       377 ~~~~v~---g~G~~~~~~~~~------------------~~~~~~~~l~~~Gv~~~~~---~~-~~~iri~~-~~~~t~e  430 (451)
                      .+..+.   +...++.|.+..                  ...++.+.|+++|+++...   +. .+++|+++ +..++++
T Consensus       410 g~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~  489 (511)
T 3vp6_A          410 EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQS  489 (511)
T ss_dssp             TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHH
T ss_pred             CEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHH
Confidence            544333   344455554310                  0235888899999755431   22 14699988 7888999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013008          431 ELDQAVEILCKTLPVL  446 (451)
Q Consensus       431 ~i~~~l~~l~~~l~~~  446 (451)
                      ||+.+++.|++.-+.+
T Consensus       490 di~~ll~~i~~~~~~~  505 (511)
T 3vp6_A          490 DIDFLIEEIERLGQDL  505 (511)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998876543

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.73  E-value=2.7e-17  Score=164.06  Aligned_cols=293  Identities=12%  Similarity=0.006  Sum_probs=173.8

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHhhccCC---CeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFA---DRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKE  188 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~---e~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~  188 (451)
                      .+|+|++++.+...........++  .+...+++++++++++.   +++++ ++||++|+..+++.+.   +        
T Consensus        51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~---~--------  119 (398)
T 2fyf_A           51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI---D--------  119 (398)
T ss_dssp             CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC---S--------
T ss_pred             CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc---C--------
Confidence            678898888763111100011111  12367899999999873   48898 9999999999999764   1        


Q ss_pred             CCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHH
Q 013008          189 PATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       189 ~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      ++  ++.....+|+....... ..+          ....+..++.++-......+. .++++|++...++++|.+.+   
T Consensus       120 ~g--v~~v~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~g~~~~~~i~-~~~~~v~~~~~~nptG~~~~---  183 (398)
T 2fyf_A          120 KR--SLHLTYGEFSAKFASAVSKNP----------FVGEPIIITSDPGSAPEPQTD-PSVDVIAWAHNETSTGVAVA---  183 (398)
T ss_dssp             SC--EEEEECSHHHHHHHHHHHHCT----------TSCCCEEEECCTTCCCCCCCC-TTCSEEEEESEETTTTEECC---
T ss_pred             CC--eEEEeCCHHHHHHHHHHHHhC----------CCCceEEEecCCCCCCCcccc-CCCCEEEEeCcCCCcceecc---
Confidence            33  33336667754322111 110          001112222210000000133 35677777777777787665   


Q ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhccC-------
Q 013008          268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY-------  338 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~-------  338 (451)
                       +++|.++   ||+++|+||+|+.+...   ....    .+|+++  ++|.++++.++|++++++++++.+..       
T Consensus       184 -~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~  252 (398)
T 2fyf_A          184 -VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRW  252 (398)
T ss_dssp             -CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCC
T ss_pred             -hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCC
Confidence             4444444   89999999999754321   1111    267665  55999864358999999988776521       


Q ss_pred             ---CC----------ccCC-CCCcHHHHHHHHHHHHHhcChH----HHHH----------HHhCCCCcceec--c--c-c
Q 013008          339 ---GD----------HGST-FAGSPLVCNAAIAVLDKISNPA----FLAS----------KLARNPHVKDVR--G--L-G  385 (451)
Q Consensus       339 ---~~----------~~~t-~~~~~~~~aaa~aal~~~~~~~----~~~~----------~~~~~~~~~~v~--g--~-G  385 (451)
                         ..          ...+ .+.+..+++++.++|+.+.+.+    ..++          .+++++.+....  +  . +
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~  332 (398)
T 2fyf_A          253 VPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQ  332 (398)
T ss_dssp             CCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCS
T ss_pred             CCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCC
Confidence               00          0122 2356667777777777543221    1111          233444333221  2  2 3


Q ss_pred             eeEEEEec--CChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          386 LIIGIEFD--VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       386 ~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .++++.+.  .+..++.+.|.++||.+.++..   ++.+|+++...+++||+++++++|++++++
T Consensus       333 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          333 VVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            47788873  3578899999999999976421   368999998888999999999999998764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.71  E-value=2e-15  Score=150.70  Aligned_cols=200  Identities=14%  Similarity=0.122  Sum_probs=135.1

Q ss_pred             CCHHHHHHHHHHH-hh--cccc-cCCCCCHHHHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008          115 GDADWIKAVVDQA-NV--LTHV-SNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK  187 (451)
Q Consensus       115 ~~p~v~~a~~~~~-~~--~~~~-~~~~~~~~~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~  187 (451)
                      ++++|.+|+.+.. ..  +... ...+....+.+|+++++++++.+..++   ++||++|+..+++.+.           
T Consensus        30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all-----------   98 (409)
T 3jzl_A           30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL-----------   98 (409)
T ss_dssp             HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC-----------
T ss_pred             hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc-----------
Confidence            4577888887753 11  1111 122345558899999999999887777   8999999999998654           


Q ss_pred             CCCceEEEEc-CCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEcc----ccC
Q 013008          188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEP----IQG  257 (451)
Q Consensus       188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep----~~~  257 (451)
                      .++|.||+.+ +.|++.... ....+..  ...+......+.+++.     .|++++++++++ ++++|++++    +++
T Consensus        99 ~~GD~Vl~~~~~~y~~~~~~-~~~~g~~--~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~n  174 (409)
T 3jzl_A           99 RPDDELLYITGQPYDTLEEI-VGIRKQG--QGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADR  174 (409)
T ss_dssp             CTTCEEEECSSSCCTTHHHH-HTSSSSS--SSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSS
T ss_pred             CCCCEEEEeCCCCcHhHHHH-Hhcccch--hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEECCCCCCCC
Confidence            2689999998 887665421 1111100  0000111122334443     489999999975 688999998    777


Q ss_pred             CCCccccCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccccccccccCCCccee--eecccccCC--cccccccccHH
Q 013008          258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGG--LPIGAALVTEK  331 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G--~~iG~v~~~~~  331 (451)
                      +.|.+.+    +++|.++|++  ||+++|+||+|..+......   ...+  .|++  +++|.++++  ...|+++++++
T Consensus       175 ptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p---~~~g--~Div~~S~sK~lgg~~~~~GG~v~~~~~  245 (409)
T 3jzl_A          175 PSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP---PEVG--ADIIAGSLIKNPGGGLAKTGGYIAGKEA  245 (409)
T ss_dssp             CCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS---GGGT--CSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred             CcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCc---cccC--CeEEEECccccCCccCCceEEEEEeCHH
Confidence            7777655    9999999999  99999999998644211111   1223  4655  788999864  34689999999


Q ss_pred             HHhhccC
Q 013008          332 VASAINY  338 (451)
Q Consensus       332 i~~~~~~  338 (451)
                      +++.+..
T Consensus       246 li~~l~~  252 (409)
T 3jzl_A          246 LVDLCGY  252 (409)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.70  E-value=3.1e-15  Score=149.86  Aligned_cols=201  Identities=15%  Similarity=0.134  Sum_probs=134.0

Q ss_pred             CHHHHHHHHHHH--hh-ccccc-CCCCCHHHHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008          116 DADWIKAVVDQA--NV-LTHVS-NMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSKE  188 (451)
Q Consensus       116 ~p~v~~a~~~~~--~~-~~~~~-~~~~~~~~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~~  188 (451)
                      .++|.+|+.+..  +. +.... ..+......+|+++++++++.+..++   ++||++|+..++..+.           .
T Consensus        45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all-----------~  113 (427)
T 3i16_A           45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL-----------R  113 (427)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC-----------C
T ss_pred             HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh-----------C
Confidence            367778777642  11 11111 12344558899999999999877777   8999999999988654           2


Q ss_pred             CCceEEEEc-CCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCC-CCeEEEEEcc----ccC
Q 013008          189 PATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQP-GKTAAVFVEP----IQG  257 (451)
Q Consensus       189 ~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~-~~~aavi~ep----~~~  257 (451)
                      ++|+||+.+ +.|++..... ...+... ...+......+..++.     .|+++|+++++. .++++|++++    +++
T Consensus       114 pGD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~n  191 (427)
T 3i16_A          114 PGNTMLSVCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWR  191 (427)
T ss_dssp             TTCEEEESSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSS
T ss_pred             CCCEEEEeCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCC
Confidence            689999998 8887654221 0000000 0000011122333443     489999999973 4789999999    667


Q ss_pred             CCCccccCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccccccccccCCCccee--eecccccC-C-cccccccccHH
Q 013008          258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEK  331 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~  331 (451)
                      +.|.+.+    +++|+++|++  ||+++|+||+|..+.......   ..+  .|++  +++|.+++ | ...|+++++++
T Consensus       192 ptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~~  262 (427)
T 3i16_A          192 RALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTKD  262 (427)
T ss_dssp             CCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred             CcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccC--CeEEEecCcccCCCCCCceEEEEEECHH
Confidence            7776555    9999999999  999999999996542122211   123  4554  78899986 4 56799999999


Q ss_pred             HHhhccC
Q 013008          332 VASAINY  338 (451)
Q Consensus       332 i~~~~~~  338 (451)
                      +++.++.
T Consensus       263 li~~l~~  269 (427)
T 3i16_A          263 CIEKTSY  269 (427)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.70  E-value=1.7e-15  Score=151.86  Aligned_cols=202  Identities=12%  Similarity=0.108  Sum_probs=135.4

Q ss_pred             CCHHHHHHHHHHHhh---cccc-cCCCCCHHHHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008          115 GDADWIKAVVDQANV---LTHV-SNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK  187 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~---~~~~-~~~~~~~~~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~  187 (451)
                      ++++|.+|+.+....   +... ...+......+|+++++++++.+..++   ++||++|+..++..+.           
T Consensus        45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all-----------  113 (427)
T 3hvy_A           45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNL-----------  113 (427)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTC-----------
T ss_pred             hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhc-----------
Confidence            457888888775321   1111 112334458899999999999887777   8999999999988654           


Q ss_pred             CCCceEEEEc-CCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcCC-CCeEEEEEcc----ccC
Q 013008          188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQP-GKTAAVFVEP----IQG  257 (451)
Q Consensus       188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~-~~~aavi~ep----~~~  257 (451)
                      .++|.||+.+ +.|++..... ..++... ...+......+..++.    .|+++|+++++. .++++|++++    +++
T Consensus       114 ~pGD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~n  191 (427)
T 3hvy_A          114 RPNDTMMSICGMPYDTLHDII-GMDDSKK-VGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWR  191 (427)
T ss_dssp             CTTCEEEECSSSCCGGGHHHH-TCCTTCC-SCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSS
T ss_pred             CCCCEEEEeCCCCchhHHHHh-ccccchh-hhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCC
Confidence            2689999998 8887764111 0000000 0000111122334444    589999999972 4789999999    666


Q ss_pred             CCCccccCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccccccccccCCCccee--eecccccC-C-cccccccccHH
Q 013008          258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEK  331 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~  331 (451)
                      +.|.+.+    +++|+++|++  ||+++|+||+|..+.......   ..+  .|++  +++|.+++ | ...|+++++++
T Consensus       192 ptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~~~~  262 (427)
T 3hvy_A          192 KSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAGKEE  262 (427)
T ss_dssp             CCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred             ccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccC--CeEEEECCcccccccccceEEEEEECHH
Confidence            6665554    9999999999  899999999996442122211   123  4554  78899986 4 45688999999


Q ss_pred             HHhhccC
Q 013008          332 VASAINY  338 (451)
Q Consensus       332 i~~~~~~  338 (451)
                      +++.++.
T Consensus       263 li~~l~~  269 (427)
T 3hvy_A          263 YVTQATF  269 (427)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.69  E-value=1.2e-15  Score=156.15  Aligned_cols=315  Identities=11%  Similarity=0.022  Sum_probs=171.8

Q ss_pred             HHHHHHHHHhhcccccCCC--CCHHHHHHHHHHhhccCCC-----------eEEecCCHHHHHHHHHHHHHHHh-hhcCC
Q 013008          119 WIKAVVDQANVLTHVSNMY--YSIPQIELAKRLVACSFAD-----------RVFFSNTGTEANEAAIKFARKFQ-RHSNP  184 (451)
Q Consensus       119 v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~e-----------~v~~~~sG~eA~~~al~~a~~~~-~~~~~  184 (451)
                      +.+++...+......+...  ....+.+++++++++++.+           .+++|+||++|+..++.+++... ...+.
T Consensus        90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~  169 (486)
T 1js3_A           90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA  169 (486)
T ss_dssp             HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence            5566666654322111111  1122445667777777733           48999999999999999886431 10000


Q ss_pred             CCCCCC--------ce--EEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC-----eEE
Q 013008          185 DSKEPA--------TE--FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK-----TAA  249 (451)
Q Consensus       185 ~~~~~~--------~~--ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-----~aa  249 (451)
                      .   ++        ++  |++.++.|+.+. .+....|.....   .+...+..    -|+++|+++|+++.     +.+
T Consensus       170 ~---~gd~~~~~~~~~~~v~~s~~~h~s~~-~~~~~~G~~v~~---v~~d~~~~----~d~~~L~~~i~~~~~~g~~p~~  238 (486)
T 1js3_A          170 A---SPGLTQGAVLEKLVAYASDQAHSSVE-RAGLIGGVKLKA---IPSDGKFA----MRASALQEALERDKAAGLIPFF  238 (486)
T ss_dssp             H---STTCCHHHHHHHEEEEEETTCCHHHH-HHHHHHTCEEEE---ECCCTTSC----CCHHHHHHHHHHHHHTTCEEEE
T ss_pred             c---CccchhcccCCCEEEEECCCCcHHHH-HHHHhCCCceEE---eecCCCCC----CCHHHHHHHHHHHHhCCCCceE
Confidence            0   01        23  556666665433 333332221111   11111111    18999999996321     234


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccceeee--cccccCCcccccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAA  326 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v  326 (451)
                      |++....++.|.+.+    +++|.++|++||+++++|++|.++......+.....++ ..|.+++  +|.++..+++|++
T Consensus       239 vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l  314 (486)
T 1js3_A          239 VVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAM  314 (486)
T ss_dssp             EEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEE
T ss_pred             EEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEE
Confidence            444444455666666    99999999999999999999976422211111111122 3576664  5988766888998


Q ss_pred             cccHH--HHhhccC--C-Ccc-----------------CCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhC
Q 013008          327 LVTEK--VASAINY--G-DHG-----------------STFAGSPLVCNAAIAVLDKISNPAFLAS----------KLAR  374 (451)
Q Consensus       327 ~~~~~--i~~~~~~--~-~~~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~  374 (451)
                      +++++  +.+.+..  . ...                 .+.....+.+.+++..+..-.-++..++          .++.
T Consensus       315 ~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~  394 (486)
T 1js3_A          315 WVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ  394 (486)
T ss_dssp             EESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88643  3444421  0 000                 0011234444444443321000111111          2334


Q ss_pred             CCCccee-cccceeEEEEecCC---hHHHHHHHHHCCceee-ec--CCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHH
Q 013008          375 NPHVKDV-RGLGLIIGIEFDVS---ATPVVDACRDSGLLVL-TA--GKGNVVRLVP-PLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       375 ~~~~~~v-~g~G~~~~~~~~~~---~~~~~~~l~~~Gv~~~-~~--~~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .|.+..+ .+.+.++.|.+...   ..++.+.|.++|+++. +.  +....+|+++ +...|+++|++++++|+++++++
T Consensus       395 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~  474 (486)
T 1js3_A          395 DPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL  474 (486)
T ss_dssp             CTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5544332 23455666666321   4678888988886543 32  1125789985 44578999999999999998876


Q ss_pred             hh
Q 013008          447 DS  448 (451)
Q Consensus       447 ~~  448 (451)
                      .+
T Consensus       475 ~~  476 (486)
T 1js3_A          475 LA  476 (486)
T ss_dssp             HC
T ss_pred             Hh
Confidence            53

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.68  E-value=9.8e-15  Score=149.23  Aligned_cols=289  Identities=14%  Similarity=0.073  Sum_probs=165.3

Q ss_pred             HHHHHHHHhhccCCC------------eEEecCCHHHHHHHHHHHHHHHhhhc----CCC----CCCCCceEEEEcCCcc
Q 013008          142 QIELAKRLVACSFAD------------RVFFSNTGTEANEAAIKFARKFQRHS----NPD----SKEPATEFVSFTNSFH  201 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e------------~v~~~~sG~eA~~~al~~a~~~~~~~----~~~----~~~~~~~ii~~~~~yh  201 (451)
                      +.++.+++++.++.+            ..+|++||++||..|+.++|.....+    ++.    +..++..|++.+. .|
T Consensus       120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~-~H  198 (481)
T 4e1o_A          120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQ-AH  198 (481)
T ss_dssp             HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETT-SC
T ss_pred             HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCc-ch
Confidence            555666677777632            57899999999999999998643210    000    0002444555544 45


Q ss_pred             CChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCC-----CeEEEEEccccCCCCccccCHHHHHH
Q 013008          202 GRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQF  271 (451)
Q Consensus       202 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~-----~~aavi~ep~~~~~G~~~~~~~~l~~  271 (451)
                      .+...+..+.+..            ++.+|.     -|+++|+++|++.     .+.+|++....++.|.+.+    +++
T Consensus       199 ~s~~~~~~~~g~~------------~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~  262 (481)
T 4e1o_A          199 SSVEKAGLISLVK------------MKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSE  262 (481)
T ss_dssp             HHHHHHHHHHTCE------------EEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHH
T ss_pred             HHHHHHHHhCCCc------------eEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHH
Confidence            5544444443321            222222     2899999999632     1455555555566677766    999


Q ss_pred             HHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccceeee--cccccCCccccccccc-HHHH-hhccCC--Cc---
Q 013008          272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVT-EKVA-SAINYG--DH---  341 (451)
Q Consensus       272 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~-~~i~-~~~~~~--~~---  341 (451)
                      |.++|++||+++++|++|.+....+..+.....++ ..|.+++  .|.++.....|+++.+ ++.. +.+...  ..   
T Consensus       263 I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~  342 (481)
T 4e1o_A          263 LGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHA  342 (481)
T ss_dssp             HHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCT
T ss_pred             HHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCc
Confidence            99999999999999999976422222221112243 3577765  5988765666776665 3433 222110  00   


Q ss_pred             --c-----------CCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec-ccceeEEEEecC---
Q 013008          342 --G-----------STFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR-GLGLIIGIEFDV---  394 (451)
Q Consensus       342 --~-----------~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~-g~G~~~~~~~~~---  394 (451)
                        .           .+.....+.+.+++..+..-.-++..++          .++..|.+..+. ....++.|.+..   
T Consensus       343 ~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~  422 (481)
T 4e1o_A          343 NSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNS  422 (481)
T ss_dssp             TTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHH
T ss_pred             ccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchH
Confidence              0           0111134444444444321000111111          334555443332 334566666632   


Q ss_pred             ChHHHHHHHHHCCce-eeecC--CCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHh
Q 013008          395 SATPVVDACRDSGLL-VLTAG--KGNVVRLVPP-LIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       395 ~~~~~~~~l~~~Gv~-~~~~~--~~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ...++.+.|.++|++ +.+..  ....+|+++. ...|++||++++++|+++++++.
T Consensus       423 ~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~  479 (481)
T 4e1o_A          423 LTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL  479 (481)
T ss_dssp             HHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            246788889988854 44421  1257898855 45589999999999999988764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.66  E-value=9e-15  Score=149.21  Aligned_cols=294  Identities=11%  Similarity=0.014  Sum_probs=162.1

Q ss_pred             HHHHHHHHhhccCCC-----------eEEecCCHHHHHHHHHHHHHHHhhhc----CCCC----CCCCceEEEEcCCccC
Q 013008          142 QIELAKRLVACSFAD-----------RVFFSNTGTEANEAAIKFARKFQRHS----NPDS----KEPATEFVSFTNSFHG  202 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e-----------~v~~~~sG~eA~~~al~~a~~~~~~~----~~~~----~~~~~~ii~~~~~yhg  202 (451)
                      +.++.+++++.++.+           ..+|++||++||..|+.++|......    ++.-    ..+++.|++ +...|.
T Consensus       115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~-s~~~H~  193 (475)
T 3k40_A          115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYC-SDQAHS  193 (475)
T ss_dssp             HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEE-ETTSCH
T ss_pred             HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEE-CCCchH
Confidence            455666677777733           68999999999999999997543210    0000    001234444 445555


Q ss_pred             ChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC-----CeEEEEEccccCCCCccccCHHHHHHHHHHHH
Q 013008          203 RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACD  277 (451)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~  277 (451)
                      +...+....+.....   .+...+.     -|+++|+++|++.     .+.+|++.-..++.|.+.+    +++|.++|+
T Consensus       194 s~~~~~~~~g~~~~~---v~~d~~~-----~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la~  261 (475)
T 3k40_A          194 SVERAGLLGGVKLRS---VQSENHR-----MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVGN  261 (475)
T ss_dssp             HHHHHHHHHTCEEEE---ECCBTTB-----CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHH
T ss_pred             HHHHHHHHcCCceEE---EECCCCC-----cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHHH
Confidence            554444443321111   1111111     2899999999632     1444555544555677766    999999999


Q ss_pred             HhCCEEEEeccccCCCcccccccccccCC-Ccceeee--cccccCCcccccccccH-HHH-hhccCC--C--c---c---
Q 013008          278 DAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTE-KVA-SAINYG--D--H---G---  342 (451)
Q Consensus       278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~-~i~-~~~~~~--~--~---~---  342 (451)
                      +||+++++|++|.+....+..+.....++ ..|.+++  .|.+++...+|+++.++ +.. +.+...  .  .   .   
T Consensus       262 ~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~  341 (475)
T 3k40_A          262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP  341 (475)
T ss_dssp             HTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------------
T ss_pred             HhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCC
Confidence            99999999999965322222111111233 4577766  59887656677777654 332 222100  0  0   0   


Q ss_pred             ----CCC-CCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCccee-cccceeEEEEecC---ChHHHH
Q 013008          343 ----STF-AGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKDV-RGLGLIIGIEFDV---SATPVV  400 (451)
Q Consensus       343 ----~t~-~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~v-~g~G~~~~~~~~~---~~~~~~  400 (451)
                          .++ .+-++......++|+.+..+.+   .++          .++..|.+..+ .....++.|.+..   ...++.
T Consensus       342 ~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~  421 (475)
T 3k40_A          342 DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALL  421 (475)
T ss_dssp             -------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHH
T ss_pred             CcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHH
Confidence                001 1111222223333333222211   111          23445544333 2334556666632   246788


Q ss_pred             HHHHHCCcee-eecC-C-CCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          401 DACRDSGLLV-LTAG-K-GNVVRLVPP-LIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       401 ~~l~~~Gv~~-~~~~-~-~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      ++|.++|.++ .+.. . ...+|+++. ..+|++||++++++|+++++++..
T Consensus       422 ~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~  473 (475)
T 3k40_A          422 KRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ  473 (475)
T ss_dssp             HHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            8899888754 3321 1 257899865 446899999999999999988754

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.65  E-value=1e-14  Score=154.94  Aligned_cols=286  Identities=13%  Similarity=0.035  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHhhccCCCeEE-ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCC
Q 013008          140 IPQIELAKRLVACSFADRVF-FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS  218 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~~e~v~-~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~  218 (451)
                      ....++++.++++++.+..+ +++|+++|+..++.++.           .++|+||+..++|+......+.++|......
T Consensus       173 ~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~-----------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v  241 (730)
T 1c4k_A          173 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV-----------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYL  241 (730)
T ss_dssp             THHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhc-----------CCCCEEEEcCCchHHHHHHHHHHCCCEEEEE
Confidence            34788999999999976655 55555699999998664           2688999999887654433133333221100


Q ss_pred             CCcCCCCCe-eEeeCCCHHHH-----HHhcCCC------C----eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCE
Q 013008          219 PFEPVMPGV-NFVEYGNIEAT-----RKLIQPG------K----TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL  282 (451)
Q Consensus       219 ~~~~~~~~~-~~~~~~d~~~l-----e~~l~~~------~----~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l  282 (451)
                      ......-+. ..+   |+++|     ++++++.      .    ..+++++|.  ..|.+.+    +++|.++|++||++
T Consensus       242 ~~~~~~~~i~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~~g~~  312 (730)
T 1c4k_A          242 QTNRNPYGFIGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGHLCDY  312 (730)
T ss_dssp             CEEECTTCCEEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGGGBSE
T ss_pred             eCCccccCccCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHHcCCe
Confidence            000000000 011   55555     8888753      2    345555553  4677766    99999999999999


Q ss_pred             EEEeccccC-CCccc--c---cccccccCCC-cc-ee--eecccccCCccc-ccccccHHHH-------h--hccCC-Cc
Q 013008          283 LVFDEVQCG-LGRTG--Y---LWAHEHYGIF-PD-IM--TLAKPLAGGLPI-GAALVTEKVA-------S--AINYG-DH  341 (451)
Q Consensus       283 lI~DEv~tg-~gr~G--~---~~~~~~~~~~-pd-i~--t~sK~lg~G~~i-G~v~~~~~i~-------~--~~~~~-~~  341 (451)
                      ||+||+|.+ ++..+  .   ....+.++.. ++ ++  +++|+++| ++. |++..+++.+       +  .+... ..
T Consensus       313 livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~  391 (730)
T 1c4k_A          313 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNL  391 (730)
T ss_dssp             EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCCCHHHHHHHHHH
T ss_pred             EEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcCcccccCHHHHHHHHHH
Confidence            999999963 22111  1   0111122332 11 44  56898864 343 4443332211       1  11110 11


Q ss_pred             cCCCCCcHHHHHHHHHHHHHhcC---hHHHHH-----------HHhCCCCcceecc------------------------
Q 013008          342 GSTFAGSPLVCNAAIAVLDKISN---PAFLAS-----------KLARNPHVKDVRG------------------------  383 (451)
Q Consensus       342 ~~t~~~~~~~~aaa~aal~~~~~---~~~~~~-----------~~~~~~~~~~v~g------------------------  383 (451)
                      ..+.+.++..+++..++++.+..   .++.++           +.+.++.+....+                        
T Consensus       392 ~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~  471 (730)
T 1c4k_A          392 FMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWR  471 (730)
T ss_dssp             HSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGB
T ss_pred             hCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhc
Confidence            22334566666766677776543   223332           2232332221110                        


Q ss_pred             --------------cce-e-----EEEEec-------------CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHH
Q 013008          384 --------------LGL-I-----IGIEFD-------------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQ  430 (451)
Q Consensus       384 --------------~G~-~-----~~~~~~-------------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e  430 (451)
                                    .+. +     +.+...             ..+..+.+.|.++||.+...+. ..+|+.++..+|++
T Consensus       472 ~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~-~~ir~~~s~g~t~e  550 (730)
T 1c4k_A          472 FEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDL-NSILFLMTPAETPA  550 (730)
T ss_dssp             CCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECS-SEEEEECCTTCCHH
T ss_pred             cCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCC-CeEEEEeCCCCCHH
Confidence                          111 1     233331             2467889999999999987665 78999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 013008          431 ELDQAVEILCKTLPVLD  447 (451)
Q Consensus       431 ~i~~~l~~l~~~l~~~~  447 (451)
                      ++++++++|.++.+...
T Consensus       551 ~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          551 KMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999887654

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.63  E-value=1.1e-14  Score=147.08  Aligned_cols=268  Identities=15%  Similarity=0.087  Sum_probs=153.4

Q ss_pred             HHHHHHHHHhhccCCC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCC
Q 013008          141 PQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEH  215 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~  215 (451)
                      ...++.++++++++.+  .+.+++|++.|+++++.+++ ..         ++++||+.++.|+........   ..|...
T Consensus       109 ~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~---------~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v  178 (438)
T 1wyu_A          109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ET---------GRMGVLVSQGVHPEYRAVLRAYLEAVGAKL  178 (438)
T ss_dssp             HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HH---------TCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cC---------CCCEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence            3678889999998854  45789989855555544332 21         588999998887554322211   112111


Q ss_pred             cCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEe--ccccCCC
Q 013008          216 YRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD--EVQCGLG  293 (451)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D--Ev~tg~g  293 (451)
                      ..   .+...+  .+   |+++    +.+ ++++|++... ++.|.+.+    +++|.++|++||+++|+|  +..  +|
T Consensus       179 ~~---v~~~~~--~~---d~~~----i~~-~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a--~g  238 (438)
T 1wyu_A          179 LT---LPLEGG--RT---PLPE----VGE-EVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS--LG  238 (438)
T ss_dssp             EE---ECCBTT--BC---CCCC----CCT-TEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG--GG
T ss_pred             EE---EcCcCC--cc---CHHH----hCC-CeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh--cc
Confidence            00   011000  01   2222    443 5677776665 66777766    999999999999999955  332  22


Q ss_pred             cccccccccccCCCcceeeec-cccc-----CCcccccccccHHHHhhccCCC--------------------------c
Q 013008          294 RTGYLWAHEHYGIFPDIMTLA-KPLA-----GGLPIGAALVTEKVASAINYGD--------------------------H  341 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~s-K~lg-----~G~~iG~v~~~~~i~~~~~~~~--------------------------~  341 (451)
                      .....   ..+  .+|++++| |.++     +|.++|++++++++++.+....                          .
T Consensus       239 ~~~~~---~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~  313 (438)
T 1wyu_A          239 VLKPP---GAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA  313 (438)
T ss_dssp             TBCCH---HHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG
T ss_pred             CcCCC---ccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchh
Confidence            21111   222  36887774 7543     2457899999998877653210                          0


Q ss_pred             cCCCCC---cHHHHHHHHHHHHHhcChH---HHHH----------HHhCCCCcceecccceeEE--EEecCChHHHHHHH
Q 013008          342 GSTFAG---SPLVCNAAIAVLDKISNPA---FLAS----------KLARNPHVKDVRGLGLIIG--IEFDVSATPVVDAC  403 (451)
Q Consensus       342 ~~t~~~---~~~~~aaa~aal~~~~~~~---~~~~----------~~~~~~~~~~v~g~G~~~~--~~~~~~~~~~~~~l  403 (451)
                      ..|.+.   +.+...++...+..+..+.   ..++          .++.++.+........+..  +.+.....++.+.|
T Consensus       314 ~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L  393 (438)
T 1wyu_A          314 KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRAL  393 (438)
T ss_dssp             GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHHH
T ss_pred             cccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCCCCHHHHHHHH
Confidence            123322   2222222212233222211   1111          2344443332222233332  33334678899999


Q ss_pred             HHCCcee--eecC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          404 RDSGLLV--LTAG--KGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       404 ~~~Gv~~--~~~~--~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .++||.+  .++.  ..+.+|+++...+|++|+++++++|++++
T Consensus       394 ~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          394 AERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             HHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             HHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence            9999998  4442  14789999998899999999999998764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.52  E-value=4.4e-13  Score=143.56  Aligned_cols=284  Identities=18%  Similarity=0.099  Sum_probs=165.1

Q ss_pred             HHHHHHHHHhhccCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          141 PQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e~-v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ...++.+.+++.++.+. +++++|+++|+..++.++.           .++|+||+.+++|+..... +..+|.....  
T Consensus       206 ~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~-----------~~GD~Vlv~~~~h~s~~~~-~~~~G~~~v~--  271 (755)
T 2vyc_A          206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM-----------TDNDVVVVDRNCHKSIEQG-LMLTGAKPVY--  271 (755)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHH-HHHHCCEEEE--
T ss_pred             HHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhc-----------CCCCEEEECCCchHHHHHH-HHHcCCEEEE--
Confidence            35677788888888554 5566666799999998665           2689999999987654433 3333322111  


Q ss_pred             CcCCCCC-ee-EeeCC----CHHHHHHhcCCC-Ce---------EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEE
Q 013008          220 FEPVMPG-VN-FVEYG----NIEATRKLIQPG-KT---------AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALL  283 (451)
Q Consensus       220 ~~~~~~~-~~-~~~~~----d~~~le~~l~~~-~~---------aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ll  283 (451)
                       .+...+ .. .-+.+    |+++|++++++. ++         .+++++| + ..|.+.+    +++|.++|++||++|
T Consensus       272 -v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n-~~G~v~d----l~~I~~ia~~~~~~l  344 (755)
T 2vyc_A          272 -MVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-T-YDGVCYN----AKEAQDLLEKTSDRL  344 (755)
T ss_dssp             -ECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-C-TTSEEEC----HHHHHHHHTTTCSEE
T ss_pred             -EeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-C-CCceecC----HHHHHHHHHHcCCEE
Confidence             011000 00 00000    789999998621 22         4566665 3 4677666    999999999999999


Q ss_pred             EEeccccCCCcccccc-cccc-cC--CC---cc---eeeecccccCCcc-cccccccHH--HH--hhccCC-CccCCCCC
Q 013008          284 VFDEVQCGLGRTGYLW-AHEH-YG--IF---PD---IMTLAKPLAGGLP-IGAALVTEK--VA--SAINYG-DHGSTFAG  347 (451)
Q Consensus       284 I~DEv~tg~gr~G~~~-~~~~-~~--~~---pd---i~t~sK~lg~G~~-iG~v~~~~~--i~--~~~~~~-~~~~t~~~  347 (451)
                      |+||+|.+.-..+..+ .... .+  ..   +.   +.+++|+++| ++ .|++.++++  ..  ..+... ....+.+.
T Consensus       345 ivDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp  423 (755)
T 2vyc_A          345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTSP  423 (755)
T ss_dssp             EEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSC
T ss_pred             EEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHHHHHHHHHHhCCCCH
Confidence            9999996421122110 0011 22  11   11   2367898864 34 455555433  11  111110 11223445


Q ss_pred             cHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCC---------cc-----eecc-----------------
Q 013008          348 SPLVCNAAIAVLDKISNP---AFLAS----------KLARNPH---------VK-----DVRG-----------------  383 (451)
Q Consensus       348 ~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~---------~~-----~v~g-----------------  383 (451)
                      +.+.+++..++++.+..+   +++++          .+++++.         +.     .+.+                 
T Consensus       424 ~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (755)
T 2vyc_A          424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLL  503 (755)
T ss_dssp             CHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhc
Confidence            677777777888877653   34433          1111111         10     0000                 


Q ss_pred             ----------------------cc------eeEEEEec------------CChHHHHHHHHHCCceeeecCCCCEEEEeC
Q 013008          384 ----------------------LG------LIIGIEFD------------VSATPVVDACRDSGLLVLTAGKGNVVRLVP  423 (451)
Q Consensus       384 ----------------------~G------~~~~~~~~------------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~  423 (451)
                                            .|      ..+.+.+.            .++..+.+.|.++||.+...+. +.+|+.+
T Consensus       504 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~-~~v~~~~  582 (755)
T 2vyc_A          504 TTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTD-FQIMFLF  582 (755)
T ss_dssp             HHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECS-SEEEEEC
T ss_pred             cchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCC-CeEEEEE
Confidence                                  12      12233322            1236788888889998876555 7899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          424 PLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       424 ~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +...|++++++++++|.+..+...
T Consensus       583 ~~g~t~~~~~~l~~al~~~~~~~~  606 (755)
T 2vyc_A          583 SMGVTRGKWGTLVNTLCSFKRHYD  606 (755)
T ss_dssp             CTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999998876543

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.41  E-value=2.7e-12  Score=126.21  Aligned_cols=300  Identities=10%  Similarity=0.010  Sum_probs=174.4

Q ss_pred             CCCCCHHHHHHHHHHHhhccc-ccCC---CC-----CHHHHHHHHHHhhccC-C--CeEEe-cCCHHHHHHHHHHHHHHH
Q 013008          112 LGHGDADWIKAVVDQANVLTH-VSNM---YY-----SIPQIELAKRLVACSF-A--DRVFF-SNTGTEANEAAIKFARKF  178 (451)
Q Consensus       112 lG~~~p~v~~a~~~~~~~~~~-~~~~---~~-----~~~~~~l~~~l~~~~~-~--e~v~~-~~sG~eA~~~al~~a~~~  178 (451)
                      .+.-+|+|.+++.+.+.++.. +...   .+     .....+..+.++++++ .  ++|+| +.|||+|++.++..+...
T Consensus        21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~  100 (377)
T 3e77_A           21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL  100 (377)
T ss_dssp             SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred             cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence            345789999999998764321 1111   11     1225567777888887 2  46888 578999999999865421


Q ss_pred             hhhcCCCCCCCCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccC
Q 013008          179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG  257 (451)
Q Consensus       179 ~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~  257 (451)
                      .         ++|++++..-+.++....-.. ..|....   ..+...+...    +++.++..+.+ ++++|.+..+..
T Consensus       101 ~---------~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~---~~~~~~~~~~----~~~~~~~~i~~-~t~lV~~~h~et  163 (377)
T 3e77_A          101 K---------AGRCADYVVTGAWSAKAAEEAKKFGTINI---VHPKLGSYTK----IPDPSTWNLNP-DASYVYYCANET  163 (377)
T ss_dssp             S---------TTCEEEECCCSHHHHHHHHHHTTTSEEEE---CSCCCSSSCS----CCCGGGCCCCT-TCSCEEEESEET
T ss_pred             C---------CCCeEEEEECCHHHHHHHHHHHHhCCceE---EeccCCCcCC----CCChHHhccCC-CccEEEEeCccC
Confidence            0         267887776666654211111 0111100   0111111111    33445555544 556666555555


Q ss_pred             CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhh
Q 013008          258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASA  335 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~  335 (451)
                      ..|.+.|    +     +|+++|+++++|-+++ +|.  ...-.+.++    ++++|  |.+| ...+|++++++++.+.
T Consensus       164 ~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~--~~id~~~~~----~~~~s~~K~~g-p~G~g~l~~~~~~l~~  226 (377)
T 3e77_A          164 VHGVEFD----F-----IPDVKGAVLVCDMSSN-FLS--KPVDVSKFG----VIFAGAQKNVG-SAGVTVVIVRDDLLGF  226 (377)
T ss_dssp             TTTEECS----S-----CCCCTTCCEEEECTTT-TTS--SCCCGGGCS----EEEEEGGGTTS-CTTCEEEEEETTSCSC
T ss_pred             chheEch----h-----hhccCCCEEEEEcccc-cCC--CCCchhhcC----EEEEecccccC-CCccEEEEEcHHHHhh
Confidence            5677766    3     5889999999999996 432  222333444    34444  9894 3457778888777654


Q ss_pred             ccCC-----------CccCCCC-CcHHHHHHHHHHHHHhcCh-HH---HHH----------HHhCCCCcc-ee---ccc-
Q 013008          336 INYG-----------DHGSTFA-GSPLVCNAAIAVLDKISNP-AF---LAS----------KLARNPHVK-DV---RGL-  384 (451)
Q Consensus       336 ~~~~-----------~~~~t~~-~~~~~~aaa~aal~~~~~~-~~---~~~----------~~~~~~~~~-~v---~g~-  384 (451)
                      +.+.           ....+++ .|..+..+..++|+.+.+. ++   .++          .++.+|.+. ..   ... 
T Consensus       227 ~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs  306 (377)
T 3e77_A          227 ALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRS  306 (377)
T ss_dssp             CCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBC
T ss_pred             ccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcC
Confidence            4321           0122333 3555666666788876544 22   111          223454332 11   112 


Q ss_pred             ceeEEEEecC-C--h---HHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          385 GLIIGIEFDV-S--A---TPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       385 G~~~~~~~~~-~--~---~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +..+.|.++. .  .   ..+.+.|.++||.+.++.. .+.+|+++....|+||||.+++.|++++++
T Consensus       307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          307 KMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             SSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            3456676642 1  1   3577778889999877632 245999999999999999999999998865

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.38  E-value=6e-12  Score=132.80  Aligned_cols=279  Identities=13%  Similarity=0.118  Sum_probs=165.2

Q ss_pred             HHHHHHHHHhhccCCCeEEecCCH-HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-CcCC
Q 013008          141 PQIELAKRLVACSFADRVFFSNTG-TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRS  218 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e~v~~~~sG-~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~  218 (451)
                      ...++++++++.++.++.+|+++| +.||..++.++.           .++|+||+..++|.. ...++.+++.. .+..
T Consensus       196 ~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~-----------~pGD~VLv~r~~H~S-~~~~l~lsGa~pv~v~  263 (715)
T 3n75_A          196 PHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA-----------PAGSTILIDRNCHKS-LTHLMMMSDVTPIYFR  263 (715)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEESSCCHH-HHHHHHHSCCEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC-----------CCCCEEEECCCccHH-HHHHHHHcCCEEEEEe
Confidence            367889999999998887776666 699999888665           268899988887644 44445554432 2211


Q ss_pred             CCcCCCCCeeEeeCC------CHHHHHHhcCC-CCe----EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEec
Q 013008          219 PFEPVMPGVNFVEYG------NIEATRKLIQP-GKT----AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE  287 (451)
Q Consensus       219 ~~~~~~~~~~~~~~~------d~~~le~~l~~-~~~----aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE  287 (451)
                      ..    .+-.-++.+      |+++|++++++ .+.    ++|+++|  +..|.+.+    +++|.++|++++  +|+||
T Consensus       264 ~~----~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDE  331 (715)
T 3n75_A          264 PT----RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDS  331 (715)
T ss_dssp             CC----BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEEC
T ss_pred             cc----ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEcc
Confidence            10    000011111      79999999972 122    4666777  56777776    899999998774  79999


Q ss_pred             cccCCCccccccc-cc--ccCCCcce-----eeecccccCCc-ccccccccHHHH-hhccC-CCccCCCCCcHHHHHHHH
Q 013008          288 VQCGLGRTGYLWA-HE--HYGIFPDI-----MTLAKPLAGGL-PIGAALVTEKVA-SAINY-GDHGSTFAGSPLVCNAAI  356 (451)
Q Consensus       288 v~tg~gr~G~~~~-~~--~~~~~pdi-----~t~sK~lg~G~-~iG~v~~~~~i~-~~~~~-~~~~~t~~~~~~~~aaa~  356 (451)
                      +|...-..+..+. ..  ..+..+|+     .+++|++++ + ..|++.+++++. +.+.. .....|.+.+++.+++..
T Consensus       332 AH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~Asld  410 (715)
T 3n75_A          332 AWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTE  410 (715)
T ss_dssp             TTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred             ccccccccCCccccccccccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHH
Confidence            9964312232211 11  11222564     367899874 2 346666654321 11211 122345567888888888


Q ss_pred             HHHHHhcC---hHHHHH-------H---HhCCCC------cce-----ec-------------------cccee------
Q 013008          357 AVLDKISN---PAFLAS-------K---LARNPH------VKD-----VR-------------------GLGLI------  387 (451)
Q Consensus       357 aal~~~~~---~~~~~~-------~---~~~~~~------~~~-----v~-------------------g~G~~------  387 (451)
                      ++++.++.   +++.++       +   +++++.      +..     +.                   +.+.+      
T Consensus       411 aA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~K  490 (715)
T 3n75_A          411 TAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIK  490 (715)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTE
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeE
Confidence            89988763   344444       1   111110      000     00                   00100      


Q ss_pred             EEEEec------------CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFD------------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       388 ~~~~~~------------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +.+...            ..+..+.+.|.++||.+--... +.+-+.++...|++++++++++|.+.-+.
T Consensus       491 l~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~-~~vl~l~s~g~~~~~~~~L~~aL~~~~~~  559 (715)
T 3n75_A          491 VTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGP-YNLLFLFSIGIDKTKALSLLRALTDFKRA  559 (715)
T ss_dssp             EEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEET-TEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCC-CcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            111111            1235778888889998876655 55667778889999999999998876544

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.34  E-value=6.2e-11  Score=116.02  Aligned_cols=285  Identities=7%  Similarity=-0.055  Sum_probs=165.6

Q ss_pred             CCHHHHHHHHHHHhhccc-ccCC---CC-----CHHHHHHHHHHhhccCC---CeEEe-cCCHHHHHHHHHHHHHHHhhh
Q 013008          115 GDADWIKAVVDQANVLTH-VSNM---YY-----SIPQIELAKRLVACSFA---DRVFF-SNTGTEANEAAIKFARKFQRH  181 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~-~~~~---~~-----~~~~~~l~~~l~~~~~~---e~v~~-~~sG~eA~~~al~~a~~~~~~  181 (451)
                      -+|+|.+++.+.+.++.. .++.   .+     .....+..+.++++++.   ++|+| |+|||+|++.++..+.     
T Consensus        16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-----   90 (361)
T 3m5u_A           16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-----   90 (361)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred             CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-----
Confidence            589999999987754221 1110   11     12356677778888873   37888 9999999999998554     


Q ss_pred             cCCCCCCCCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCC-------CHHHHHHhcCCCCeEEEEEc
Q 013008          182 SNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYG-------NIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~aavi~e  253 (451)
                             ++++++...-+.+++...... ..|            ..+..++.+       +++.  + |++ ++++|.+.
T Consensus        91 -------~~~~~~~i~~~~~~~~~~~~a~~~G------------~~v~~~~~~~~g~~~~~~~~--~-l~~-~t~lv~~~  147 (361)
T 3m5u_A           91 -------LNGVCEYANTGVWTKKAIKEAQILG------------VNVKTVASSEESNFDHIPRV--E-FSD-NADYAYIC  147 (361)
T ss_dssp             -------CSSCEEEEECSHHHHHHHHHHHHTT------------CCEEEEEECTTTTSCSCCCC--C-CCT-TSSEEEEE
T ss_pred             -------CCCeEEEEeCCHHHHHHHHHHHHcC------------CceEEEecccCcCCCcCChh--h-cCC-CCCEEEEe
Confidence                   245553333333343211111 001            111111110       2233  3 654 45566664


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK  331 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~  331 (451)
                      .+....|.+.+.         +|+ +|+++++|-+++ +|..  ..-.+    ..|++++|  |.+| .-.+|+++++++
T Consensus       148 ~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~g-p~G~g~l~~~~~  209 (361)
T 3m5u_A          148 SNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNAG-ISGLSCIFIRKD  209 (361)
T ss_dssp             SEETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTSS-CTTCEEEEEEHH
T ss_pred             CCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhccC-CCccEEEEEcHH
Confidence            444445765442         444 499999999996 5322  11121    25777776  8884 345788888988


Q ss_pred             HHhhccC----CC--------ccCCC-CCcHHHHHHHHHHHHHhcCh-HH---HHH----------HHhCCCCc-cee-c
Q 013008          332 VASAINY----GD--------HGSTF-AGSPLVCNAAIAVLDKISNP-AF---LAS----------KLARNPHV-KDV-R  382 (451)
Q Consensus       332 i~~~~~~----~~--------~~~t~-~~~~~~~aaa~aal~~~~~~-~~---~~~----------~~~~~~~~-~~v-~  382 (451)
                      +.+.+.+    ..        ...++ +.|..+..+..++|+.+.+. ++   .++          .++.++.+ ... .
T Consensus       210 ~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~  289 (361)
T 3m5u_A          210 MLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD  289 (361)
T ss_dssp             HHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC
T ss_pred             HHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC
Confidence            8765533    10        12222 34556667777888877554 22   121          22344422 111 1


Q ss_pred             --c-cceeEEEEecC--C-hHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          383 --G-LGLIIGIEFDV--S-ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       383 --g-~G~~~~~~~~~--~-~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                        . ....+.|.++.  . ..++...|.++||.+.++.. -+.+|+++....|+||||++++.|+++.++
T Consensus       290 ~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          290 KKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             GGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence              1 13356666642  1 24677888889999876632 134999999999999999999999998765

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.33  E-value=6.5e-12  Score=124.12  Aligned_cols=307  Identities=9%  Similarity=-0.015  Sum_probs=169.2

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc-ccCC------C--CCHHHHHHHHHHhhccC-C--CeEEe-cCCH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VSNM------Y--YSIPQIELAKRLVACSF-A--DRVFF-SNTG  164 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~------~--~~~~~~~l~~~l~~~~~-~--e~v~~-~~sG  164 (451)
                      +.|+|..+..      .-+|+|.+++.+.+.+... .+..      .  ......+..+.++++++ .  ++|+| +.||
T Consensus        27 ~~yl~~agpt------~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~  100 (386)
T 3qm2_A           27 QVFNFSSGPA------MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG  100 (386)
T ss_dssp             CCEECCSSSC------CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred             cCccccCCCC------CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence            4577654432      2689999999876654211 1110      0  11224567777888877 2  46888 6899


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc-cCCCCcCCCCcCCC---CCeeEeeCCCHHHHHH
Q 013008          165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVM---PGVNFVEYGNIEATRK  240 (451)
Q Consensus       165 ~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~d~~~le~  240 (451)
                      |+|++.+++.+..           +++++++..-+.++........ .| .. .  +.+..   .+...    |+++++.
T Consensus       101 T~a~n~ai~~l~~-----------~gd~v~~~~~~~~~~~~~~~a~~~G-~v-~--~v~~~~~~~G~~~----~~~~~~~  161 (386)
T 3qm2_A          101 RGQFAGVPLNLLG-----------DKTTADYVDAGYWAASAIKEAKKYC-AP-Q--IIDAKITVDGKRA----VKPMREW  161 (386)
T ss_dssp             THHHHHHHHHHCT-----------TCCEEEEEESSHHHHHHHHHHTTTS-EE-E--EEECEEEETTEEE----ECCGGGC
T ss_pred             hHHHHHHHHhccC-----------CCCeEEEEeCCHHHHHHHHHHHHhC-Ce-E--EEecCcccCCCCC----CchHHHh
Confidence            9999999986531           4778776665555542111110 01 00 0  01111   11101    3456666


Q ss_pred             hcCCCCeEEEEEccccCCCCcc-ccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccC
Q 013008          241 LIQPGKTAAVFVEPIQGEGGIY-SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG  319 (451)
Q Consensus       241 ~l~~~~~aavi~ep~~~~~G~~-~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~  319 (451)
                      .+.+ ++++|.+..+....|.+ .|    +++|.     +|+++++|-+++ +|..  ..-.+.++  .++.+--|.+| 
T Consensus       162 ~l~~-~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~~--pidv~~~~--~~~~s~hK~lG-  225 (386)
T 3qm2_A          162 QLSD-NAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILSA--PLDVSRYG--VIYAGAQKNIG-  225 (386)
T ss_dssp             CCCT-TCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTSS--CCCGGGCS--EEEEETTTTTC-
T ss_pred             hcCC-CCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCCC--CCCccccC--EEEEecccccC-
Confidence            6754 56667666665566774 44    44443     899999999996 5322  22333343  23333338884 


Q ss_pred             CcccccccccHHHHhhccCCC-----------ccCCC-CCcHHHHHHHHHHHHHhcCh-HHH---HH----------HHh
Q 013008          320 GLPIGAALVTEKVASAINYGD-----------HGSTF-AGSPLVCNAAIAVLDKISNP-AFL---AS----------KLA  373 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~~~-----------~~~t~-~~~~~~~aaa~aal~~~~~~-~~~---~~----------~~~  373 (451)
                      ...+|++.+++++.+.+.+..           ....+ +.|..+..+..++++.+.+. ++.   ++          .++
T Consensus       226 P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~  305 (386)
T 3qm2_A          226 PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVID  305 (386)
T ss_dssp             CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            345788888888765443210           01111 23444555666777765443 221   11          123


Q ss_pred             CCCCccee---ccc-ceeEEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          374 RNPHVKDV---RGL-GLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       374 ~~~~~~~v---~g~-G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..+.....   ... ...+.|.++.  ....+...|.++||.+.++.. -+.+|+++....|+||||++++.|+++.++
T Consensus       306 ~~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          306 NSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             TCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCcccCCCHHHcCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence            33321111   112 2456666642  225677778889998876532 134999999999999999999999998764

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.22  E-value=2.3e-10  Score=114.09  Aligned_cols=179  Identities=9%  Similarity=-0.056  Sum_probs=109.9

Q ss_pred             HHHHHHHHhhccC---CCeEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcC
Q 013008          142 QIELAKRLVACSF---ADRVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR  217 (451)
Q Consensus       142 ~~~l~~~l~~~~~---~e~v~~~~sG~-eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  217 (451)
                      ...+..++.+.+|   ....++++++| .++.+++.+++....        +++.||+... -|-+...++.+.|.....
T Consensus       100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~--------~~~~viv~r~-aHkSv~kAl~l~Gl~p~~  170 (450)
T 3bc8_A          100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRP--------KAKYIIWPRI-DQKSCFKSMVTAGFEPVV  170 (450)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCT--------TCCEEEEECC-CCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhc--------CCCEEEEECC-cHHHHHHHHHHcCCeeEE
Confidence            4456666666666   33458888887 666666666674311        2566777754 788888887776542211


Q ss_pred             CCCcCCCCCeeEeeCCCHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008          218 SPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR  294 (451)
Q Consensus       218 ~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  294 (451)
                      -...+... .  .. -|+++|+++|+.   +.+++|++.|.+..+|.+-+    +++|.++|++||+++++||+|.+.-+
T Consensus       171 v~~~~~~~-~--~~-id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~  242 (450)
T 3bc8_A          171 IENVLEGD-E--LR-TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSS  242 (450)
T ss_dssp             ECCEEETT-E--EE-CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred             EEeeecCc-c--CC-cCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhh
Confidence            01111011 1  11 289999999962   46788888876665555556    99999999999999999999965322


Q ss_pred             ccccccccccCC-Ccceeeec--ccccCCcccccccc-cHHHHhhcc
Q 013008          295 TGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALV-TEKVASAIN  337 (451)
Q Consensus       295 ~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~-~~~i~~~~~  337 (451)
                      ....+..+.+.. ..|.+++|  |.+..-...+.+.. +++..+.+.
T Consensus       243 ~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~  289 (450)
T 3bc8_A          243 KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS  289 (450)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHH
T ss_pred             hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHH
Confidence            211111111211 47888887  76654345566654 555555553

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.17  E-value=2.3e-09  Score=105.86  Aligned_cols=272  Identities=9%  Similarity=0.041  Sum_probs=152.0

Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCeeEeeCC
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYG  233 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  233 (451)
                      ....+++|++|.++.+++.++....+       +++++||+ ...-|-+...++.+.|. +.+..+. . ..+...   -
T Consensus       134 ~~~~flVnGsTgg~lamilaa~r~~r-------pg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p~-~-d~~~~~---i  200 (501)
T 3hl2_A          134 VANCFVVPMATGMSLTLCFLTLRHKR-------PKAKYIIW-PRIDQKSCFKSMITAGFEPVVIENV-L-EGDELR---T  200 (501)
T ss_dssp             CCEEEEESSCHHHHHHHHHHHHHHHC-------TTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECEE-E-ETTEEE---E
T ss_pred             CCcEEEECcHHHHHHHHHHHHcCccc-------CCCCEEEE-ecchHHHHHHHHHHcCCeEEEEeee-e-cccccC---C
Confidence            34588889888787777776654321       02477777 45567777777776653 2222110 0 011111   1


Q ss_pred             CHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccc
Q 013008          234 NIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPD  309 (451)
Q Consensus       234 d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pd  309 (451)
                      |++.|+++|+.   +.+++|+..|.+..++...+    +++|+++|++||+++++||+|...-.....+..+.+.. ..|
T Consensus       201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD  276 (501)
T 3hl2_A          201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID  276 (501)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence            89999999972   45677777665443444344    99999999999999999999954322222111222222 489


Q ss_pred             eeeec--ccccCCcccc-ccc-c-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHH---HH-----------
Q 013008          310 IMTLA--KPLAGGLPIG-AAL-V-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL---AS-----------  370 (451)
Q Consensus       310 i~t~s--K~lg~G~~iG-~v~-~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~---~~-----------  370 (451)
                      +++.|  |.+-  .|+| +++ . ++++++.+.... .++.+++|..  ..+.++..+-.+.+.   ++           
T Consensus       277 ~vVqS~HK~ll--vpIGG~ii~~~d~e~l~~~~~~y-PGr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~  351 (501)
T 3hl2_A          277 AFVQSLDKNFM--VPVGGAIIAGFNDSFIQEISKMY-PGRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSYLSNQ  351 (501)
T ss_dssp             EEEEEHHHHHC--CCSSCEEEEESCHHHHHHHHHTS-CSCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccccce--eecCceEEEeCCHHHHHHHHHhC-CCCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888  5542  2333 233 3 567777664322 2334444433  222223222222221   11           


Q ss_pred             ---HHhCCC-CcceecccceeEEEEecC-------ChHHHHHHHHHCCce---eeecC------------C--------C
Q 013008          371 ---KLARNP-HVKDVRGLGLIIGIEFDV-------SATPVVDACRDSGLL---VLTAG------------K--------G  416 (451)
Q Consensus       371 ---~~~~~~-~~~~v~g~G~~~~~~~~~-------~~~~~~~~l~~~Gv~---~~~~~------------~--------~  416 (451)
                         +...+. .+-..+.--.-+++.++.       ....+-..|..++|-   +.+.+            .        -
T Consensus       352 L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~  431 (501)
T 3hl2_A          352 IKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPC  431 (501)
T ss_dssp             HHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSS
T ss_pred             HHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCc
Confidence               222222 111222222233444421       134667778877553   22221            0        1


Q ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          417 NVVRLVPPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       417 ~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      .++-+.....++++|+|.++++|++++.+++.
T Consensus       432 ~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~  463 (501)
T 3hl2_A          432 AYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK  463 (501)
T ss_dssp             CEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35777788899999999999999999988764

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.86  E-value=1.3e-07  Score=93.02  Aligned_cols=305  Identities=16%  Similarity=0.143  Sum_probs=155.5

Q ss_pred             CCHHHHHHHHHHHhh-cccccC---CC-CCHH---HHHHHH-HHhhccCCCeE-----EecCCHHHHHHHHHHHHHHHhh
Q 013008          115 GDADWIKAVVDQANV-LTHVSN---MY-YSIP---QIELAK-RLVACSFADRV-----FFSNTGTEANEAAIKFARKFQR  180 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~-~~~~~~---~~-~~~~---~~~l~~-~l~~~~~~e~v-----~~~~sG~eA~~~al~~a~~~~~  180 (451)
                      ..|.|.+|+-..+.. +.-++.   +| ..+.   .+.|+. +..+.++.+..     +=-.||+.||..++.++.    
T Consensus        66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All----  141 (490)
T 3ou5_A           66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL----  141 (490)
T ss_dssp             CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc----
Confidence            567777776655432 221111   11 1221   333433 34455664421     234589999999999776    


Q ss_pred             hcCCCCCCCCceEEEEcCCccCChhhh-------hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          181 HSNPDSKEPATEFVSFTNSFHGRTMGA-------LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                             .|+|+|+..+-.--|+..-.       ...++.. +.....+..+....+   |.+.++++....++++||+-
T Consensus       142 -------~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~-~~~~~Y~vd~~t~~I---Dyd~~~~~A~~~kPklIi~G  210 (490)
T 3ou5_A          142 -------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF-FESMPYKLNPKTGLI---DYNQLALTARLFRPRLIIAG  210 (490)
T ss_dssp             -------C-CCCEECBC-----------------------------CBCEETTTTEE---CHHHHHHHHHHHCCSEEEEC
T ss_pred             -------CCCCEEEecccCCCCcccccccCCCccccccccc-ccccccccCCCCCcc---cHHHHHHHHhhcCCCeEEEC
Confidence                   27999999876654443221       1112111 110000111111112   78888888775577888886


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCcceeeec--ccccCCcccccccccH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE  330 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~  330 (451)
                      ...-.-  ..+    +++++++|++.|++|++|=+| +|+--.|. +.. -+. ..|++|.+  |+|.| -+.|.|++++
T Consensus       211 ~SaY~r--~id----~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~ps-P~~-~ADvVTtTTHKTLrG-PrGG~Il~~~  280 (490)
T 3ou5_A          211 TSAYAR--LID----YARMREVCDEVKAHLLADMAHISGLVAAKV-IPS-PFK-HADIVTTTTHKTLRG-ARSGLIFYRK  280 (490)
T ss_dssp             CSSCCS--CCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCC-GGG-TCSEEEEESSSTTCS-CSCEEEEEEC
T ss_pred             CccCcc--ccC----HHHHHHHHhhcccEEEechhhhhhhhcccc-cCC-ccc-cceEEeccccccccC-CCceEEEecc
Confidence            542221  233    899999999999999999998 45522232 111 112 26888766  88864 4667777765


Q ss_pred             ---------------HHHhhccCCCccCCCCCcHHHHHHHHHH-HHHhcChHH---HHH-------HHhCCC--Ccceec
Q 013008          331 ---------------KVASAINYGDHGSTFAGSPLVCNAAIAV-LDKISNPAF---LAS-------KLARNP--HVKDVR  382 (451)
Q Consensus       331 ---------------~i~~~~~~~~~~~t~~~~~~~~aaa~aa-l~~~~~~~~---~~~-------~~~~~~--~~~~v~  382 (451)
                                     ++.+.+....+.+..+++-+-..||.++ +.....+++   .++       +.+.+.  .+.-+.
T Consensus       281 ~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvs  360 (490)
T 3ou5_A          281 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVS  360 (490)
T ss_dssp             SEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred             ccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeec
Confidence                           2333333222333344433333333322 332222222   222       221110  122122


Q ss_pred             c--cceeEEEEec---CChHHHHHHHHHCCceeee----cCC----CCEEEEeCC----CCCCHHHHHHHHHHHHHHHH
Q 013008          383 G--LGLIIGIEFD---VSATPVVDACRDSGLLVLT----AGK----GNVVRLVPP----LIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       383 g--~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~----~~~----~~~iri~~~----~~~t~e~i~~~l~~l~~~l~  444 (451)
                      |  ...++.+++.   ....+..+.|-+.||.+..    ...    .+-|||-.+    ....++|++++.+.|.+++.
T Consensus       361 GgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          361 GGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             GSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            2  1345667772   3456666777778998752    211    245898655    34678999999999988774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	451
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	1e-118
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	1e-116
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	1e-112
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	2e-98
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	3e-73
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	3e-73
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	7e-70
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	4e-62
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	5e-24
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	3e-21
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	8e-21
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	2e-19
d1fc4a_	401	c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E	4e-11
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	2e-08
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	2e-05
d1bs0a_	383	c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a	0.001

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score =  348 bits (894), Expect = e-118
 Identities = 151/396 (38%), Positives = 236/396 (59%), Gaps = 26/396 (6%)

Query: 63  KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
           + ++EAEK L  G YN+  +++  G+G +++DAEG EY+D   G  V  LGHG+ + ++A
Sbjct: 2   RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEA 61

Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR 180
           V  QA  L  +     +  + E  + L A    +  RVF  N+GTEANEAA+KFAR    
Sbjct: 62  VKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTG 121

Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
                      +FV+    F GRTMG+L++T +  YR PF P++  V F+ Y ++EA ++
Sbjct: 122 R---------KKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR 172

Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
            +   +TAAV +EP+QGEGG+  AT EFL+  R+   + GALL+ DE+Q G+GRTG  +A
Sbjct: 173 AV-DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 231

Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL- 359
            EH+GI PDI+TLAK L GG+P+G A++ E+VA ++  G HG+TF G+PL   A +A + 
Sbjct: 232 FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIR 291

Query: 360 -----------DKISNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATP-VVDACRDSG 407
                       ++        +   +P +++VRG+GL++G+E    A P +    ++  
Sbjct: 292 YLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHR 351

Query: 408 LLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           +L L AG   V+R +PPL+I +++L++ VE +   L
Sbjct: 352 VLALQAG-PTVIRFLPPLVIEKEDLERVVEAVRAVL 386

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score =  343 bits (881), Expect = e-116
 Identities = 131/406 (32%), Positives = 196/406 (48%), Gaps = 20/406 (4%)

Query: 60  RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +  ++ +  E K     Y+  PVVL   KG  +YD   + Y D  S  +    GH   + 
Sbjct: 1   KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNI 60

Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
           + A+++QA  LT  S  ++S+P     + L      D+V   NTG EANE A K  RK+ 
Sbjct: 61  LNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG 120

Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
                   E   + V   N+F GRT+G ++ ++ +   S F P  P  + V Y ++EA  
Sbjct: 121 YE-VKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALE 179

Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
           + ++     A  VEPIQGE G+   +  +LQ + D C     L V DEVQ GLGRTG L 
Sbjct: 180 EELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL 239

Query: 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNA---- 354
              HY + PD++ L K L+GG  PI A L  + +   I  G+HGST+ G+PL  +     
Sbjct: 240 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEA 299

Query: 355 ----------AIAVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEFD---VSATPVVD 401
                       A          L  +L  +  V+DVRG GL+  IEF    V+   +  
Sbjct: 300 LNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICL 359

Query: 402 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447
             +++GL+         +RL PPL I++++LD+  EI+ KT+   D
Sbjct: 360 KLKENGLITRDVH-DKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 404

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  334 bits (857), Expect = e-112
 Identities = 128/400 (32%), Positives = 191/400 (47%), Gaps = 19/400 (4%)

Query: 61  NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
            + ++ E E K      +  PV L  GKG  L+D EGR+Y D  S I+    GH     +
Sbjct: 4   TSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 63

Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
            A+  Q + LT  S  +Y+    E  + +       +V   NTG EA E A K ARK+  
Sbjct: 64  NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 123

Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
                 ++   + V    +F GRT+ A++ ++       F P MPG + + Y ++ A  +
Sbjct: 124 TVKGI-QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 182

Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
            +Q    AA  VEPIQGE G+      +L  +R+ C     L + DE+Q GL RTG   A
Sbjct: 183 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 242

Query: 301 HEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
            ++  + PDI+ L K L+GG  P+ A L  + +   I  G+H ST+ G+PL C  AIA L
Sbjct: 243 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAAL 302

Query: 360 DKISNPAFLAS------------KLARNPHVKDVRGLGLIIGIEF----DVSATPVVDAC 403
           + +       +                +  V  VRG GL+  I      D  A  V    
Sbjct: 303 EVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRL 362

Query: 404 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
           RD+GLL      G+++R  PPL+I E EL +++EI+ KT+
Sbjct: 363 RDNGLLAKPTH-GDIIRFAPPLVIKEDELRESIEIINKTI 401

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  299 bits (767), Expect = 2e-98
 Identities = 135/428 (31%), Positives = 205/428 (47%), Gaps = 54/428 (12%)

Query: 61  NNKEVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
           +NKE+M+   + +     +  P+     + C+++D EGREYLD + GIAV   GH     
Sbjct: 2   SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 61

Query: 120 IKAVVDQANVLTHVS-NMYYSIPQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
           + AV  Q   L+H    +    P +EL + +   V   FA +     TG+EA E A+K A
Sbjct: 62  VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 121

Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV----- 230
           R   +          +  ++F+ ++HGRT   LALT K +  S    +MPG  +      
Sbjct: 122 RAATKR---------SGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 172

Query: 231 ----------EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
                             +    P   AA+ +EP+QGEGG Y+++  F+Q LR  CD+ G
Sbjct: 173 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 232

Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
            +L+ DEVQ G GRTG L+A E  G+ PD+ T AK +AGG P+       +V  A+  G 
Sbjct: 233 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 292

Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASKL--------------ARNPHVKDVRGLGL 386
            G T+AG+P+ C AA+ VL        L                   ++P + DVRGLG 
Sbjct: 293 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 352

Query: 387 IIGIEFDVS----------ATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQA 435
           +I IE                 +V   RD GL++L+ G   NV+R++ PL I + ++ Q 
Sbjct: 353 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 412

Query: 436 VEILCKTL 443
           +EI+ +  
Sbjct: 413 LEIISQCF 420

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score =  234 bits (598), Expect = 3e-73
 Identities = 94/435 (21%), Positives = 148/435 (34%), Gaps = 69/435 (15%)

Query: 62  NKEVMEAEKKLLVG----------TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNA 111
           + E+  A +KL+ G          +    P+V    K    +D +G  Y+D         
Sbjct: 6   SDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAI 65

Query: 112 LGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELA-KRLVACSFADRVFFSNTGTEANEA 170
            GH   + I+A+       T          +  LA     A    + V F N+GTEA  A
Sbjct: 66  CGHAHPEVIEALKVAMEKGTSFGAPCA--LENVLAEMVNDAVPSIEMVRFVNSGTEACMA 123

Query: 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF- 229
            ++  R +             + + F   +HG     L             P  PGV   
Sbjct: 124 VLRLMRAYTGR---------DKIIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPKK 173

Query: 230 -------VEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
                    Y ++EA + L    PG+ A V +EPI G  G       FL+ LR+   +  
Sbjct: 174 TTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD 233

Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN--- 337
           ALLVFDEV  G  R  Y    E +G+ PD+ TL K + GGLP+GA     ++   +    
Sbjct: 234 ALLVFDEVMTG-FRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAG 292

Query: 338 YGDHGSTFAGSPLVCNAAIAVLDKISNP--------------AFLASKLARNPHVKDVRG 383
                 T +G+PL   A I  L+ +  P                L +      H      
Sbjct: 293 PMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQ 352

Query: 384 LGLIIGIEFDVS---------------ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIIS 428
           +  + G  F                   +       + G+ +              L  +
Sbjct: 353 VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAP---SQFEAGFTSLAHT 409

Query: 429 EQELDQAVEILCKTL 443
           E+++D  +      +
Sbjct: 410 EEDIDATLAAARTVM 424

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score =  234 bits (597), Expect = 3e-73
 Identities = 115/410 (28%), Positives = 174/410 (42%), Gaps = 43/410 (10%)

Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
           GT+   P+++   KG  +YDA+GR  LD +SG     LGH   + +  + + A  L H+ 
Sbjct: 20  GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 77

Query: 135 NMYYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFA-----RKFQRHSNPDSK 187
           +   S P ++LA RL   +    DR    +TG E+NEAAI+ A     +           
Sbjct: 78  SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWH 137

Query: 188 EPATEFVSFTNS-----FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
                  S T S          +G+ A+ +   YR  FE         E           
Sbjct: 138 GMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ 197

Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
             G  AA   EPI   GGI      ++  L+  C+  G LL+ DE Q G+GRTG ++A +
Sbjct: 198 SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQ 257

Query: 303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLD 360
             G+ PDI+TL+K L  GLP+ A + +  +    +   +   +T    PL     + VLD
Sbjct: 258 RDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLD 317

Query: 361 KISNPAFLASKLA--------------RNPHVKDVRGLGLIIGIEF----------DVSA 396
            +     +A                  R   + DVRG GL++G+E           D   
Sbjct: 318 VVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLG 377

Query: 397 TPVVDACRDSGLL---VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
             +   C + GL    V   G G V R+ PPL +SE E+D  + +L + +
Sbjct: 378 AKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 427

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score =  226 bits (575), Expect = 7e-70
 Identities = 105/400 (26%), Positives = 164/400 (41%), Gaps = 41/400 (10%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYS 139
              + S +GC+L  ++GR  +D  S       G+       A+  Q + ++HV       
Sbjct: 26  VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85

Query: 140 IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
            P IEL ++LVA +           + +    +      Q        E    F++F N 
Sbjct: 86  APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW--QAKGEARQRFLTFRNG 143

Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI--------------QPG 245
           +HG T GA+++   ++            N                               
Sbjct: 144 YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203

Query: 246 KTAAVFVEPIQ-GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY 304
           + AAV +EPI  G GG+     E+L+ +R  CD  G LL+ DE+  G GRTG L+A EH 
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263

Query: 305 GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLVCNAAIAV 358
            I PDI+ L K L GG + + A L T +VA  I+ G+     HG TF G+PL C AA A 
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323

Query: 359 LDKISNPAFLA-------------SKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDAC 403
           L  + +  +               +       V DVR LG I  +E    V+   +    
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFF 383

Query: 404 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
            + G+ +     G ++ L+PP II  Q+L +    + + +
Sbjct: 384 VEQGVWIRPF--GKLIYLMPPYIILPQQLQRLTAAVNRAV 421

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  206 bits (524), Expect = 4e-62
 Identities = 97/446 (21%), Positives = 151/446 (33%), Gaps = 62/446 (13%)

Query: 59  GRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD 118
           G  ++E+M+    +               +G  L D +G   LDL S I+   +G+    
Sbjct: 14  GPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPA 73

Query: 119 WIKAVVDQANVLTHVSN-MYYSIPQIEL----AKRLVACSF--ADRVFFSNTGTEANEAA 171
            +K V    NV T ++      +P         + L++ +     ++     G+ +NE A
Sbjct: 74  LVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENA 133

Query: 172 IKFARKFQRH-----------------SNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
            K    + R                   N     P    +SF  +FHGRTMG LA T  +
Sbjct: 134 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK 193

Query: 215 HYRSPFEPVMPGVNFV---------------------EYGNIEATRKLIQ--PGKTAAVF 251
                  P                                 +E      +      A + 
Sbjct: 194 AIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII 253

Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF--PD 309
           VEPIQ EGG   A+ +F + LRD     G   + DEVQ G G TG  WAHEH+G+    D
Sbjct: 254 VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPAD 313

Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA--- 366
           +MT +K +  G               I     G       L     I   + + + A   
Sbjct: 314 VMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHA 373

Query: 367 ------FLASKLARNPH-VKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKGN 417
                  L    AR P  +  VRG G     +   +     ++   R+ G+++   G   
Sbjct: 374 GKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG-DK 432

Query: 418 VVRLVPPLIISEQELDQAVEILCKTL 443
            +R  P L+  +      + I    L
Sbjct: 433 SIRFRPTLVFRDHHAHLFLNIFSDIL 458

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score =  101 bits (253), Expect = 5e-24
 Identities = 48/441 (10%), Positives = 102/441 (23%), Gaps = 72/441 (16%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD-------WIKAVVDQANVLTHV 133
           P  +   +  ++   E RE     +G     L                A+ D        
Sbjct: 7   PFRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMIT 66

Query: 134 SNMYYSIPQI--ELAKRLVACSFADRVFFSNTGTEANEAAIKFARK-FQRHSNPDSKEPA 190
            +  Y+  +   +L  +       D +  ++ G  A         K  Q+     +    
Sbjct: 67  GDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFI 126

Query: 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250
           + F   T + H    G  A+          E         +   ++            A+
Sbjct: 127 SNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAI 186

Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC------GLGRTGYLWAHEHY 304
                    G    +   L+ + +     G  +V D  +          R          
Sbjct: 187 VSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK 246

Query: 305 GIFPDIM------TLAKPLAGGLPIGAALVT-------EKVASAINYGDHGSTFAGSPLV 351
            +  D+       T++      L IG  +                   +   T+ G    
Sbjct: 247 EVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGR 306

Query: 352 CNAAIAVLDK-----------ISNPAFLASKLA--RNPHVKDVRGLGLII---------- 388
             AA+    +           I    +L  +L     P      G  + +          
Sbjct: 307 DMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIP 366

Query: 389 -----------------GIEFDVSATPVVDACRDSGLLVLTAGKGNVVRL-VPPLIISEQ 430
                            G+      + ++     +G           +RL +   + +  
Sbjct: 367 GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHAD--MEFMRLTIARRVYTND 424

Query: 431 ELDQAVEILCKTLPVLDSNSN 451
            +D   + L        +   
Sbjct: 425 HMDYIADALIGLKEKFATLKG 445

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 93.4 bits (231), Expect = 3e-21
 Identities = 50/437 (11%), Positives = 109/437 (24%), Gaps = 77/437 (17%)

Query: 81  PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA-------DWIKAVVD-QANVLTH 132
           P  +   +  K      RE   + SG+    L   D            AV       +  
Sbjct: 6   PFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMR 65

Query: 133 VSNMYYSIPQI-ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191
               +        LA+ +           ++ G  A +  I    K +       +   +
Sbjct: 66  GDEAFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDR---S 122

Query: 192 EFVSFTNSFHGRTMGALALTSKE------HYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245
           + V+F+N F   T G   +                          +   +E   + + P 
Sbjct: 123 KMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN 182

Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC---GLGRTGYLWAHE 302
               +         G    +   L+ +          +V D  +              ++
Sbjct: 183 NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYK 242

Query: 303 HYGI---------FPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGSTFAGSPL 350
            + I         + D++ ++      +P+G  L  +  +    Y           G P 
Sbjct: 243 DWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPT 302

Query: 351 VCNAAIAVLD-----------------KISNPAFLASKLARNPHV----------KDVRG 383
                   ++                 +I+   +L   L     V           D   
Sbjct: 303 YGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGK 362

Query: 384 LGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----------------GNVVRL-VPPLI 426
           L   I  +   +     +  + +G+  +  G                   ++RL +P   
Sbjct: 363 LLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRAT 422

Query: 427 ISEQELDQAVEILCKTL 443
            ++  +D  +E      
Sbjct: 423 YTQTHMDFIIEAFKHVK 439

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 91.0 bits (224), Expect = 8e-21
 Identities = 47/358 (13%), Positives = 98/358 (27%), Gaps = 38/358 (10%)

Query: 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADR-V 158
            L  SS    + +     +  +A+V  +                ++ ++       D  V
Sbjct: 4   ALGFSS----DNIAGASPEVAQALVKHS--SGQAGPYGTDELTAQVKRKFCEIFERDVEV 57

Query: 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218
           F   TGT AN   +        +               ++  +         ++      
Sbjct: 58  FLVPTGTAANALCLSAMTPPWGNIYCHP---------ASHINNDECGAPEFFSNGAKLM- 107

Query: 219 PFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD 278
                      +         K+     T    V   Q        T + ++ + D C  
Sbjct: 108 -TVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKS 166

Query: 279 AGALLVFDEVQCG--LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI 336
           +   L  D  +    L   G   A   +    D ++      G L   A ++     +  
Sbjct: 167 SSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATE 226

Query: 337 NYGDHGSTFAGSPLVCNAAIAVLDKISNPAF-------------LASKLARNPHVKDVRG 383
                      S  +   +  +   +++  +             LA  L     V+ + G
Sbjct: 227 MSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG 286

Query: 384 L-GLIIGIEFDVSATPVVDACRDSGLLVLTAGKG-NVVRLVPPLIISEQELDQAVEIL 439
               I+    D   + ++DA   +G        G NVVR V     + +++D  +  +
Sbjct: 287 TEANILFCRLD---SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 86.8 bits (213), Expect = 2e-19
 Identities = 46/324 (14%), Positives = 98/324 (30%), Gaps = 29/324 (8%)

Query: 136 MYYSIPQI-ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194
           +Y   P I EL +        +   F  +GT  N+ +I    +       ++        
Sbjct: 29  VYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEAD------- 81

Query: 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254
                 H       A+           P   G    +        + I   +T+ + +E 
Sbjct: 82  -----SHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIEN 136

Query: 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA 314
                G      E ++ +     + G  +  D  +            + Y  + D +   
Sbjct: 137 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFC 196

Query: 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI--------------AVLD 360
                  P+G+ +V ++               G       A                  +
Sbjct: 197 LSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHE 256

Query: 361 KISNPAFLASKLARNPHVKDVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVV 419
                A    ++  + + +DV+   +I+  +   V+A   ++A R+SG+L         +
Sbjct: 257 NARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSD-TEI 315

Query: 420 RLVPPLIISEQELDQAVEILCKTL 443
           RLV    +S  ++++A+ I  K  
Sbjct: 316 RLVTHKDVSRNDIEEALNIFEKLF 339

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

 Score = 62.1 bits (150), Expect = 4e-11
 Identities = 58/399 (14%), Positives = 115/399 (28%), Gaps = 61/399 (15%)

Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHV 133
           G + +   ++ S +   +  A+G   ++  +    N LG     D I A     +     
Sbjct: 23  GLF-KEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFG 78

Query: 134 SNMYYSI-----PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
                 I        EL ++L A    +     ++  +AN    +     +         
Sbjct: 79  MASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDA------- 131

Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
                +S   +      G     +K +  +  +         E     A   LI      
Sbjct: 132 ----IISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLI------ 181

Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ----CGLGRTGYLWAHEHY 304
               + +    G        L+ + D  D   AL++ D+       G    G     +  
Sbjct: 182 --ATDGVFSMDG----VIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM 235

Query: 305 GIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGS--PLVCNAAIAVLDKI 362
           G    I        GG   G     ++V   +        F+ S  P +  A+I VL+ +
Sbjct: 236 GRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV 295

Query: 363 SNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVV--------------DACRDSGL 408
              + L  +L    + +  R      G     +   ++                 +  G+
Sbjct: 296 EAGSELRDRLWA--NARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQKFARELQKEGI 353

Query: 409 LVL-----TAGKGNV-VRLVPPLIISEQELDQAVEILCK 441
            V         KG   +R       + +++ +AVE   +
Sbjct: 354 YVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTR 392

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 39/339 (11%), Positives = 76/339 (22%), Gaps = 37/339 (10%)

Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFAR 176
           +  +      +T  +  Y        A RL+          V F + GT+ N  A   A 
Sbjct: 17  LDLMARDN--MTQHAG-YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL 73

Query: 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE 236
           +             +   +                             P           
Sbjct: 74  RPWEAVIATQLGHISTHETGAIEA--------------TGHKVVTAPCPDGKLRVADIES 119

Query: 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
           A  +           V            TK+ L+ +  +C + G  L  D  +     + 
Sbjct: 120 ALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSS 179

Query: 297 YLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAA- 355
            +       I                +    +     +      H     G+ +      
Sbjct: 180 PVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGWLL 239

Query: 356 -IAVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEF--------------DVSATPVV 400
            I     + +  F       N     ++      GI                +     + 
Sbjct: 240 GIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILENTMIAELN 299

Query: 401 DACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
           +      +  L  G   ++RL       E+E  + VE+L
Sbjct: 300 NDFDMYTVEPLKDGTC-IMRLCTSWATEEKECHRFVEVL 337

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 44/344 (12%), Positives = 89/344 (25%), Gaps = 64/344 (18%)

Query: 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214
              +  ++ G  A     +          P        +   T  FH    GA  +    
Sbjct: 90  FKHIVPTHQGRGAENLLSQL------AIKPGQYVAGNMY-FTTTRFHQEKNGATFVDIVR 142

Query: 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274
                    +P    ++   +    K       A + +       G    +   ++ + +
Sbjct: 143 DEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHE 202

Query: 275 ACDDAGALLVFDEVQC----------GLGRTGYLWAHEHYGIFP--DIMTLAKPLAGGLP 322
                G  + +D  +C            G          + +F   D  T++      + 
Sbjct: 203 MASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVN 262

Query: 323 IGAALVT------EKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----------ISNP 365
           IG  L              +   +   ++ G       A+A+  +           +   
Sbjct: 263 IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQV 322

Query: 366 AFLASKLARN---------------------PHVKDV----RGLGLIIGIEFDVSATP-- 398
            +L  KL                        PH+       + L   I +E  V +    
Sbjct: 323 RYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERG 382

Query: 399 VVDACRDSGLLVLTAGKGNVVRL-VPPLIISEQELDQAVEILCK 441
           +V A R          K   VRL +P  + +   +D   + + K
Sbjct: 383 IVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 63/398 (15%), Positives = 107/398 (26%), Gaps = 68/398 (17%)

Query: 75  GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG-DADWIKAVVDQA-----N 128
               R    +A G G  L  A+ R+YL+ SS    + LG       I+A    A      
Sbjct: 17  DAL-RRRYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIG 71

Query: 129 VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
                    YS+    L + L       R     +G  AN+A I                
Sbjct: 72  SGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMA----------- 120

Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
                 +   S       A          SP +      N V +      R L  P    
Sbjct: 121 KEDRIAADRLSHASLLEAA--------SLSPSQLRRFAHNDVTHLA----RLLASPCPGQ 168

Query: 249 AVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGI 306
            + V E +    G  +   E     +         L+ D+             +     +
Sbjct: 169 QMVVTEGVFSMDGDSAPLAEI----QQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV 224

Query: 307 FPD----IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNA-AIAVLDK 361
            P+           ++G   + ++ V + +   + +  H       P        A L  
Sbjct: 225 KPELLVVTFGKGFGVSGAAVLCSSTVADYL---LQFARHLIYSTSMPPAQAQALRASLAV 281

Query: 362 ISNPAFLASKLARNPHVKDVRGLGLIIGIEFDVSATPVV--------------DACRDSG 407
           I +    A +      +   R     +      S + +               +  R  G
Sbjct: 282 IRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQG 341

Query: 408 LLVL-----TAGKGN-VVRLVPPLIISEQELDQAVEIL 439
             V      T   G   +RL        Q++D+ +E+L
Sbjct: 342 CWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVL 379

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	451
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	100.0
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	100.0
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.96
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.96
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.96
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.95
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.94
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.94
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.94
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.94
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.93
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.93
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.93
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.93
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.93
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.93
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.92
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.92
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.91
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.91
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.89
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.89
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.88
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.88
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.87
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.86
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.85
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.82
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.82
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.82
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.81
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.81
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.81
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.8
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.79
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.77
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.77
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.77
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.75
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.72
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.7
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.69
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.69
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.67
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.67
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.66
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.66
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.66
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.66
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.64
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.62
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.61
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.61
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.56
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.56
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.55
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.54
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.53
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.53
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.53
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.53
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.51
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.51
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.45
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.43
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.38
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.33
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.25
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.16
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.16
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.11
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.02
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.91
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.88
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.85
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.79
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.78

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-72  Score=556.15  Aligned_cols=384  Identities=33%  Similarity=0.516  Sum_probs=346.6

Q ss_pred             cchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC
Q 013008           60 RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS  139 (451)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~  139 (451)
                      +.++++.+++.++..++|.|+|+++++|+|+||||.||++||||.+++++.+|||+||+|++|+++|++++.+.+..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~   82 (404)
T d2byla1           3 PTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN   82 (404)
T ss_dssp             CCHHHHHHHHHHHBCSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTEEE
T ss_pred             CcHHHHHHHHHHhccCCCCCCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccccccc
Confidence            36799999999999999999999999999999999999999999999999999999999999999999987665544455


Q ss_pred             HHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008          140 IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP  219 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  219 (451)
                      ....++++.+++..+.++++|++||+||++.|+|++|+++...+... ..+.+++.++++|||.+..+++.++.+..+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~-~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~  161 (404)
T d2byla1          83 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQ-KYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG  161 (404)
T ss_dssp             SSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC-TTCCEEEEETTCCCCCSHHHHTTCCCHHHHTT
T ss_pred             chHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccc-cccccccccCCCccccccceeccCCCcccccC
Confidence            55777888888888899999999999999999999999886443211 24678999999999999999998888777777


Q ss_pred             CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                      +.|..+++..+|++|++++++++.++++++||+||+++++|+++++++||++|+++|++||++||+|||+|||||+|++|
T Consensus       162 ~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~  241 (404)
T d2byla1         162 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL  241 (404)
T ss_dssp             SCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred             CCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccc
Confidence            88888999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------
Q 013008          300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------  370 (451)
Q Consensus       300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------  370 (451)
                      +++++|+.|||+|+||+|+|| +|+|++++++++++.+.+..+++||++||++|+|++++|+.++++++.++        
T Consensus       242 a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l  321 (404)
T d2byla1         242 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIIL  321 (404)
T ss_dssp             GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             hhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHH
Confidence            999999999999999999998 89999999999999999888999999999999999999999988777666        


Q ss_pred             --HHhC--CCCcceecccceeEEEEec----CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          371 --KLAR--NPHVKDVRGLGLIIGIEFD----VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       371 --~~~~--~~~~~~v~g~G~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                        .+.+  .+.+..+|+.|+|.++++.    ....++.++|+++||++.+.+. +.+|++||+++|++|||+++++|+++
T Consensus       322 ~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~-~~i~l~PpL~it~~~id~~~~~l~~a  400 (404)
T d2byla1         322 RNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHG-DIIRFAPPLVIKEDELRESIEIINKT  400 (404)
T ss_dssp             HHHHHTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEET-TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccceeeeecccEEEEEEecCCchhHHHHHHHHHhCCeEEecCCC-CEEEEECCcCCCHHHHHHHHHHHHHH
Confidence              1122  3467889999999999983    3567799999999999988654 89999999999999999999999999


Q ss_pred             HHH
Q 013008          443 LPV  445 (451)
Q Consensus       443 l~~  445 (451)
                      +++
T Consensus       401 l~~  403 (404)
T d2byla1         401 ILS  403 (404)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            874

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.8e-70  Score=542.28  Aligned_cols=370  Identities=41%  Similarity=0.737  Sum_probs=335.5

Q ss_pred             HHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHH
Q 013008           63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ  142 (451)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~  142 (451)
                      |++++..+.+....|.+.|++++|++|+|+||.|||+||||.+++++++|||+||+|.+|+.+|+++..+.+..+.++..
T Consensus         2 ~~~~~~~~~~~~~~y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~   81 (387)
T d1vefa1           2 RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMR   81 (387)
T ss_dssp             HHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHH
T ss_pred             hhHHhhhhhccCCCCCCCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCCchH
Confidence            56677777777888999999999999999999999999999999999999999999999999999987665555677888


Q ss_pred             HHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC
Q 013008          143 IELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF  220 (451)
Q Consensus       143 ~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  220 (451)
                      .++++++.+..+  .++++|++||+||++.|+|+||.|++         +.+||.++++|||++..++++++.+.++..+
T Consensus        82 ~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~---------r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~  152 (387)
T d1vefa1          82 GEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTG---------RKKFVAAMRGFSGRTMGSLSVTWEPKYREPF  152 (387)
T ss_dssp             HHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHS---------CCEEEEETTCCCCSSHHHHHTCCCHHHHGGG
T ss_pred             HHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcc---------cceecccccCCCCCccceEeccCCccccCCC
Confidence            999999988876  56899999999999999999999985         8899999999999999999999887777777


Q ss_pred             cCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc
Q 013008          221 EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA  300 (451)
Q Consensus       221 ~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~  300 (451)
                      .|...++.++|+||++.|++.++ +++++||+||+++++|+++++++||++|+++|++||++||+|||+|||||+|.+++
T Consensus       153 ~p~~~~~~~~p~~d~~~l~~~~~-~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~  231 (387)
T d1vefa1         153 LPLVEPVEFIPYNDVEALKRAVD-EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA  231 (387)
T ss_dssp             CSCSSCEEEECTTCHHHHHHHCC-TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred             CCCCCCceEeCCCCHHHHHHhcC-CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcc
Confidence            78888889999999999999996 48999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008          301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       301 ~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------  370 (451)
                      ++++++.||++|+||+++||+|++++++++++++.+.+..+++||++||++|+|++++|+.+++++++++          
T Consensus       232 ~~~~~v~PDi~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~  311 (387)
T d1vefa1         232 FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFME  311 (387)
T ss_dssp             HHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             cccCCcCCceeeecccCCCCccccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHH
Confidence            9999999999999999999999999999999999998889999999999999999999999987766655          


Q ss_pred             HHh--CCCCcceecccceeEEEEec-CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          371 KLA--RNPHVKDVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       371 ~~~--~~~~~~~v~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .++  ..+.+..+|+.|++++++++ .....+.+.++++|+++.+.+. +.+|+.||+++|++|||+++++|+++|
T Consensus       312 ~L~~l~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~-~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         312 KLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGP-TVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             HHHTSCCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCceEEEeecceEEEEEEeCCchHHHHHHHHHCCCeEEecCC-CEEEEECCccCCHHHHHHHHHHHHHHh
Confidence            122  23568889999999999995 3455677778899999888765 899999999999999999999999987

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-69  Score=542.22  Aligned_cols=361  Identities=37%  Similarity=0.603  Sum_probs=313.3

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhccC---
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF---  154 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~---  154 (451)
                      ++|+++++++|+||||.||++||||.+++++++|||+||+|.+|+.+|++++.+.+ ....++...+|+++|.+..+   
T Consensus        21 ~~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~  100 (425)
T d1sffa_          21 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDF  100 (425)
T ss_dssp             SEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSS
T ss_pred             CCCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcc
Confidence            57999999999999999999999999999999999999999999999999877654 33457788999999999986   


Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCee-EeeCC
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN-FVEYG  233 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  233 (451)
                      .++++|++||+||++.|+|++|.+|+         |.+||.++++|||++..++++++.......+.+..+... ..+++
T Consensus       101 ~~~v~f~~sGseA~e~Alk~ar~~t~---------r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~  171 (425)
T d1sffa_         101 AKKTLLVTTGSEAVENAVKIARAATK---------RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYP  171 (425)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCC
T ss_pred             cceeeeeccccchhhhHHHHhhhhhc---------ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCc
Confidence            57899999999999999999999985         889999999999999999998876554444333333332 22221


Q ss_pred             -------------CHHHHHHhc-CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008          234 -------------NIEATRKLI-QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW  299 (451)
Q Consensus       234 -------------d~~~le~~l-~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  299 (451)
                                   +.+.+.... ..+++++||+||+++++|+++++++||+.|+++|++||++||+|||+|||||+|.+|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~  251 (425)
T d1sffa_         172 CPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF  251 (425)
T ss_dssp             BGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred             cccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhh
Confidence                         011221222 256899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------
Q 013008          300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------  370 (451)
Q Consensus       300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------  370 (451)
                      +++++|+.||++|+||+++||+|+|++++++++++.+.+..+++||++||++|+|++++|++++++++.++         
T Consensus       252 a~~~~gv~PDi~~~gK~l~gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~  331 (425)
T d1sffa_         252 AMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLK  331 (425)
T ss_dssp             GGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHhcCCCccceecccccCCCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence            99999999999999999999999999999999999998889999999999999999999999987776655         


Q ss_pred             -----HHhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHH
Q 013008          371 -----KLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQ  434 (451)
Q Consensus       371 -----~~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~  434 (451)
                           +.+++|.+..+++.|++++++|..          ....+.+.|+++|+++.+.+. ++.+||+||+++|++|||+
T Consensus       332 ~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~  411 (425)
T d1sffa_         332 DGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQ  411 (425)
T ss_dssp             HHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHH
T ss_pred             hhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHH
Confidence                 456788889999999999999831          135688899999999988764 5889999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 013008          435 AVEILCKTLPVLDS  448 (451)
Q Consensus       435 ~l~~l~~~l~~~~~  448 (451)
                      ++++|+++++++++
T Consensus       412 ~l~~l~~al~eikk  425 (425)
T d1sffa_         412 GLEIISQCFDEAKQ  425 (425)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999863

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=1.6e-68  Score=533.38  Aligned_cols=383  Identities=34%  Similarity=0.573  Sum_probs=322.2

Q ss_pred             hHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 013008           62 NKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP  141 (451)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~  141 (451)
                      .+++++.+.+|..++|.|+|+++++++|.||||.|||+||||.+++++.+|||+||+|++|+.+|++++.+.+....+..
T Consensus         3 ~~~~~~~~~~~~~~~y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~   82 (404)
T d1z7da1           3 PEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVP   82 (404)
T ss_dssp             HHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHH
T ss_pred             HHHHHHHHHhcCCCCCCCCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccccchHH
Confidence            45677788899999999999999999999999999999999999999999999999999999999998776655555566


Q ss_pred             HHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCc
Q 013008          142 QIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFE  221 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~  221 (451)
                      ...+++.+.+..+.+.+.|++||++|++.|+++++.++...... ...+.+++.+..+|||.+......++...++..+.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~-~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~  161 (404)
T d1z7da1          83 LGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKI-PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFG  161 (404)
T ss_dssp             HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCC-CTTCCEEEEETTC----------------------
T ss_pred             HHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccc-cccccccccccccCCCCcccccccccccccccCCC
Confidence            66677777777789999999999999999999999988643211 12456899999999999999988887777666666


Q ss_pred             CCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc
Q 013008          222 PVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH  301 (451)
Q Consensus       222 ~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~  301 (451)
                      |..+.+..+|+++.+.++..+.++++++||+||+++++|.++|+++||++|+++|++||++||+|||+|||||+|.+|++
T Consensus       162 ~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~  241 (404)
T d1z7da1         162 PFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV  241 (404)
T ss_dssp             ----CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG
T ss_pred             CCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccc
Confidence            77788889999999999999988899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008          302 EHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------  370 (451)
Q Consensus       302 ~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------  370 (451)
                      +++|+.||++|+||+++|| +|+|++++++++++.+.+..+++||++||++|+|++++|++++++++.++          
T Consensus       242 e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~  321 (404)
T d1z7da1         242 HHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLE  321 (404)
T ss_dssp             GGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHH
Confidence            9999999999999999988 89999999999999999889999999999999999999999877665544          


Q ss_pred             ----HHhCCCCcceecccceeEEEEec---CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          371 ----KLARNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       371 ----~~~~~~~~~~v~g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                          ++++++.+..+++.|+|+++++.   ....++..+|+++|+++.+.+. +.+||+||+++|+++||+++++|++++
T Consensus       322 ~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~-~~ir~~Ppl~it~~~id~~~~~l~~al  400 (404)
T d1z7da1         322 NLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHD-KTIRLTPPLCITKEQLDECTEIIVKTV  400 (404)
T ss_dssp             HHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETT-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCeEEEEeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCCC-CEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence                45678888899999999999994   3456789999999999988876 889999999999999999999999999


Q ss_pred             HHH
Q 013008          444 PVL  446 (451)
Q Consensus       444 ~~~  446 (451)
                      +++
T Consensus       401 k~~  403 (404)
T d1z7da1         401 KFF  403 (404)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            875

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=3.9e-67  Score=526.77  Aligned_cols=383  Identities=23%  Similarity=0.331  Sum_probs=325.0

Q ss_pred             hhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHH
Q 013008           39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD  118 (451)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~  118 (451)
                      ..+|.++ |+++++.+|||++++.+.+         ..+.+.|+++++++|+||||.||++||||.+++++++|||+||+
T Consensus         3 ~~~~~~~-~~~~~~~~~~g~~~~~~~~---------~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~   72 (427)
T d2gsaa_           3 TIKSDEI-FAAAQKLMPGGVSSPVRAF---------KSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPE   72 (427)
T ss_dssp             CHHHHHH-HHHHHHHSGGGSSSGGGCC---------TTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHH
T ss_pred             chhHHHH-HHHHHhhcCCCCCCCcccc---------ccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHH
Confidence            3467788 9999999999998877543         24457799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 013008          119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT  197 (451)
Q Consensus       119 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~  197 (451)
                      |++|+++|+++..+  .........++++.+.+..+ .++++|++||+|||+.|+++++.||+         |++||.++
T Consensus        73 i~~ai~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~---------r~~ii~~~  141 (427)
T d2gsaa_          73 VIEALKVAMEKGTS--FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTG---------RDKIIKFE  141 (427)
T ss_dssp             HHHHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEET
T ss_pred             HHHHHHHHHHhcCc--cccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcC---------CCeEEEEe
Confidence            99999999988654  33456667889999988875 78999999999999999999999985         88999999


Q ss_pred             CCccCChhhhhhccCCCCcCCCC--c-----CCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHH
Q 013008          198 NSFHGRTMGALALTSKEHYRSPF--E-----PVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEF  268 (451)
Q Consensus       198 ~~yhg~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~  268 (451)
                      ++|||++.+++++++.......+  .     +..+.....+++|++++|++++  ++++++||+||+++++|.++|+++|
T Consensus       142 ~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~  221 (427)
T d2gsaa_         142 GCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGF  221 (427)
T ss_dssp             TCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTH
T ss_pred             cccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHH
Confidence            99999999998887643322211  1     1123455778999999999998  4689999999999999999999999


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---CCccCCC
Q 013008          269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGSTF  345 (451)
Q Consensus       269 l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t~  345 (451)
                      |++|+++|++||++||+|||+||| |+|.+|+++++|+.||++++||+++||+|+|++++++++++.+.+   ..+++||
T Consensus       222 l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~  300 (427)
T d2gsaa_         222 LEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL  300 (427)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTT
T ss_pred             HHHHHHHHHHhceeeeeccccccc-eecccchHHhcCCCHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCC
Confidence            999999999999999999999999 789999999999999999999999999999999999999999865   3578899


Q ss_pred             CCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec------------CC---h
Q 013008          346 AGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD------------VS---A  396 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~------------~~---~  396 (451)
                      ++||++|+|++++|++++++++.++              +.++++....+.+.|.++++.+.            .+   .
T Consensus       301 ~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~  380 (427)
T d2gsaa_         301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKF  380 (427)
T ss_dssp             TTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHH
T ss_pred             CCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHH
Confidence            9999999999999999988776655              34556654456666777777651            01   1


Q ss_pred             HHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          397 TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..+...|+++||++.|.+.   .++.||++||++|||+++++|+++++++
T Consensus       381 ~~~~~~ll~~Gv~l~p~~~---~~~~~~l~~Te~dId~~l~al~~al~~L  427 (427)
T d2gsaa_         381 SRFHRGMLEQGIYLAPSQF---EAGFTSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             HHHHHHHHHTTEECCSSTT---SCEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCEEECCCCC---cceeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            3577889999999988754   2455899999999999999999998753

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=1.5e-66  Score=523.86  Aligned_cols=373  Identities=31%  Similarity=0.512  Sum_probs=315.9

Q ss_pred             HHHHHHHhcccccCCCC-ceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHH
Q 013008           64 EVMEAEKKLLVGTYNRA-PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ  142 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~~~-p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~  142 (451)
                      .+-+...++.++.++.+ |+++++|+|+||||.|||+||||.+++++.+|||+||+|.+|+.+|++++.+....+.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~   85 (431)
T d1zoda1           6 TFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPV   85 (431)
T ss_dssp             HHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHH
T ss_pred             HHHHhhHHHhhccCCCCCCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccccccHHH
Confidence            34445555666655554 99999999999999999999999999999999999999999999999998776566678889


Q ss_pred             HHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC
Q 013008          143 IELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF  220 (451)
Q Consensus       143 ~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  220 (451)
                      .+|+++|++..+  .++|+|++||+||++.|+|+||.+|+         |++|+.++++|||++.+++++++... ...+
T Consensus        86 ~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~---------r~~i~~~~~~yHG~t~~~~~~~~~~~-~~~~  155 (431)
T d1zoda1          86 VDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTG---------KYEIVGFAQSWHGMTGAAASATYSAG-RKGV  155 (431)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHTCCSSC-CSSS
T ss_pred             HHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcC---------Ccceeecccccccccchhhccccccc-cccc
Confidence            999999999874  79999999999999999999999985         88999999999999999988876543 2333


Q ss_pred             cCCCCCeeEeeCC-----------------CHHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC
Q 013008          221 EPVMPGVNFVEYG-----------------NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG  280 (451)
Q Consensus       221 ~~~~~~~~~~~~~-----------------d~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g  280 (451)
                      .+...+...++..                 +++.++..+.   ++++++||+||+++++|.++++++|+++|+++|++||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~g  235 (431)
T d1zoda1         156 GPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARG  235 (431)
T ss_dssp             CCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred             CCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcC
Confidence            4444444433221                 2333433332   5689999999999999999999999999999999999


Q ss_pred             CEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC--CCccCCCCCcHHHHHHHHHH
Q 013008          281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY--GDHGSTFAGSPLVCNAAIAV  358 (451)
Q Consensus       281 ~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~--~~~~~t~~~~~~~~aaa~aa  358 (451)
                      ++||+|||+|||||+|.+|+++++|+.||++|+||+++||+|++++++++++++.+..  ..+++||++||++|+|+.++
T Consensus       236 illI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~  315 (431)
T d1zoda1         236 MLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRV  315 (431)
T ss_dssp             CEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHH
T ss_pred             ceEEeccccccccccccccccccCCCCcchhccccccccccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998887643  35789999999999999999


Q ss_pred             HHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec----------CChHHHHHHHHHCCceee---
Q 013008          359 LDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD----------VSATPVVDACRDSGLLVL---  411 (451)
Q Consensus       359 l~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~----------~~~~~~~~~l~~~Gv~~~---  411 (451)
                      |++++++++.++              ++++++.+.++||.|+|+++++.          ....++.+.|+++|++..   
T Consensus       316 l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~  395 (431)
T d1zoda1         316 LDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQ  395 (431)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEEC
T ss_pred             HHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeee
Confidence            999887777666              44667889999999999999882          124678899999998632   


Q ss_pred             ecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          412 TAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       412 ~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ..+.++++|++||+++|++|||+++++|+++++++
T Consensus       396 ~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         396 LPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             CTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            22235899999999999999999999999999875

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-65  Score=513.26  Aligned_cols=377  Identities=30%  Similarity=0.490  Sum_probs=319.0

Q ss_pred             HHHHHHHhcccccCC----CCceE-EEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCC
Q 013008           64 EVMEAEKKLLVGTYN----RAPVV-LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMY  137 (451)
Q Consensus        64 ~~~~~~~~~~~~~~~----~~p~~-~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~  137 (451)
                      +.+..++++.+++|.    +.|+. +++|+|+||||.||++||||.+|+++.+|||+||+|++|+++|++++.+.. ...
T Consensus         4 ~~~~~d~~h~~~p~~~~~~~~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~   83 (429)
T d1s0aa_           4 DDLAFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI   83 (429)
T ss_dssp             HHHHHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSE
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCc
Confidence            334577788888774    35664 899999999999999999999999999999999999999999999977643 335


Q ss_pred             CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008          138 YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH  215 (451)
Q Consensus       138 ~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~  215 (451)
                      .++...++++++.+..+  .++++|++||+||++.|++++|.++..++.    ++.+||.++++|||.+.+++++++...
T Consensus        84 ~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~----~~~~ii~~~~~yHG~t~~a~~~t~~~~  159 (429)
T d1s0aa_          84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE----ARQRFLTFRNGYHGDTFGAMSVCDPDN  159 (429)
T ss_dssp             ECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC----CCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred             cchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccc----cccEEEEecCCccccchhhhhhcCCcc
Confidence            66778899999998875  789999999999999999999999976664    367899999999999999998886543


Q ss_pred             cCCCCcC-CCCCee-----------EeeCCCHHHHHHhcC--CCCeEEEEEcccc-CCCCccccCHHHHHHHHHHHHHhC
Q 013008          216 YRSPFEP-VMPGVN-----------FVEYGNIEATRKLIQ--PGKTAAVFVEPIQ-GEGGIYSATKEFLQFLRDACDDAG  280 (451)
Q Consensus       216 ~~~~~~~-~~~~~~-----------~~~~~d~~~le~~l~--~~~~aavi~ep~~-~~~G~~~~~~~~l~~l~~l~~~~g  280 (451)
                      ....+.+ ......           ..++++++++++.+.  ++++++||+||++ +.+|.++++++|+++|+++|++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~g  239 (429)
T d1s0aa_         160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG  239 (429)
T ss_dssp             TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred             ccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcC
Confidence            3322211 111111           122335677776665  6789999999987 667788999999999999999999


Q ss_pred             CEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC-----CccCCCCCcHHHHHH
Q 013008          281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNA  354 (451)
Q Consensus       281 ~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~aa  354 (451)
                      ++||+|||+|||||+|.+++++++++.||++|+||++++| +|+|++++++++++.+...     .+++||++||++|+|
T Consensus       240 illI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aa  319 (429)
T d1s0aa_         240 ILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA  319 (429)
T ss_dssp             CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHH
T ss_pred             cceehhhccccccccccccccccceecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchh
Confidence            9999999999999999999999999999999999999877 8999999999999987542     478999999999999


Q ss_pred             HHHHHHHhcChHHHHH-----------H--HhCCCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCCCCEE
Q 013008          355 AIAVLDKISNPAFLAS-----------K--LARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVV  419 (451)
Q Consensus       355 a~aal~~~~~~~~~~~-----------~--~~~~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~i  419 (451)
                      ++++|++++++++.++           +  +...+.+.++|+.|+|+++++.  .....+.+.|+++|+++.+.+  +.+
T Consensus       320 a~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~g--~~i  397 (429)
T d1s0aa_         320 ANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFG--KLI  397 (429)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCBT--TEE
T ss_pred             hhccccccccccccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCcccHHHHHHHHHHCCcEEEecC--CEE
Confidence            9999999988887776           1  2345678899999999999993  457789999999999998865  789


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          420 RLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       420 ri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      ||+||+++|++|||+++++|+++++++
T Consensus       398 ~~~Ppl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         398 YLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             EEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998753

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=9.3e-63  Score=498.94  Aligned_cols=378  Identities=26%  Similarity=0.350  Sum_probs=303.6

Q ss_pred             chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-C--
Q 013008           61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-Y--  137 (451)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~--  137 (451)
                      .+++++++..++......++|+++++|+|+||||.||++||||.+|+++++|||+||+|.+|+.++++...+.+.. .  
T Consensus        16 ~s~~l~~~~~~~~~~~~~~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~   95 (461)
T d1ohwa_          16 RSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI   95 (461)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT
T ss_pred             HHHHHHHHHHHhcCCCCCCCCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccc
Confidence            5778887777766655567899999999999999999999999999999999999999999999998875432211 1  


Q ss_pred             --CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCC-----------------CCCCCCceEEEE
Q 013008          138 --YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNP-----------------DSKEPATEFVSF  196 (451)
Q Consensus       138 --~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~-----------------~~~~~~~~ii~~  196 (451)
                        .....++|+++|.+..+  .++|+|++||+||++.|||+|+.|++.++.                 ....++.+||.+
T Consensus        96 ~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~  175 (461)
T d1ohwa_          96 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSF  175 (461)
T ss_dssp             SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEE
T ss_pred             cchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEe
Confidence              22235567777766654  789999999999999999999988743210                 011246789999


Q ss_pred             cCCccCChhhhhhccCCCCcCCCCcCCCCCeeE----ee--------------CCCHHHHHHhcC-----CCCeEEEEEc
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF----VE--------------YGNIEATRKLIQ-----PGKTAAVFVE  253 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------------~~d~~~le~~l~-----~~~~aavi~e  253 (451)
                      +++|||++.+++++++.+.++..+.+.......    .+              .++.+++++++.     .+++++||+|
T Consensus       176 ~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivE  255 (461)
T d1ohwa_         176 MGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVE  255 (461)
T ss_dssp             TTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeec
Confidence            999999999999998876544333222221110    00              012456666553     5689999999


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCC--cceeeecccccCCc-ccccccccH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKPLAGGL-PIGAALVTE  330 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~--pdi~t~sK~lg~G~-~iG~v~~~~  330 (451)
                      |+++++|.++++++||++|+++|++||++||+|||+|||||+|++|+++++++.  ||++|+||++++|. +.+.++   
T Consensus       256 Pi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~g~~~~~~~~---  332 (461)
T d1ohwa_         256 PIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEF---  332 (461)
T ss_dssp             SSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEEECGGG---
T ss_pred             cccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhhhccccccccccccc---
Confidence            999999999999999999999999999999999999999999999999999984  99999999999863 333322   


Q ss_pred             HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCC-CcceecccceeEEEEec--
Q 013008          331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNP-HVKDVRGLGLIIGIEFD--  393 (451)
Q Consensus       331 ~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~-~~~~v~g~G~~~~~~~~--  393 (451)
                         ....+..+.+||++||++|+|++++|+++++++++++              +.+++| .+.++||.|+|+++++.  
T Consensus       333 ---~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~~~~  409 (461)
T d1ohwa_         333 ---RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDE  409 (461)
T ss_dssp             ---SCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSH
T ss_pred             ---ccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEEEEcCCH
Confidence               2233457889999999999999999999987777665              445666 67889999999999984  


Q ss_pred             CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          394 VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       394 ~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ....++.+.|+++|+++.+.+. ++|||.||+++|++|+|+++++|+++|++
T Consensus       410 ~~~~~i~~~~~~~Gll~~~~~~-~~ir~~PpL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         410 SIRNKLISIARNKGVMLGGCGD-KSIRFRPTLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             HHHHHHHHHHHHTTEECEEETT-TEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCeEEeeCCC-CEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence            2356789999999999998876 89999999999999999999999999975

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-39  Score=321.57  Aligned_cols=338  Identities=16%  Similarity=0.151  Sum_probs=254.3

Q ss_pred             cCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCC-CHHHHHHHHHHHhhcccccCCC-----CCHHHHHHHHHH
Q 013008           76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHVSNMY-----YSIPQIELAKRL  149 (451)
Q Consensus        76 ~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~l  149 (451)
                      ++.+...++++++|+++||.||++||||+|+.|   ||+. ||+|++|+.+++++++.++...     ..+.+.+|+++|
T Consensus        23 g~~r~~~~i~~~~g~~v~~~dG~~~l~f~s~dY---LGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~l   99 (401)
T d1fc4a_          23 GLFKEERIITSAQQADITVADGSHVINFCANNY---LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKL   99 (401)
T ss_dssp             TCCCCCCCBCSCSSSEEEBTTSCEEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHH
T ss_pred             CCCCcceeccCCCCCeEEecCCCEEEEEEcccc---ccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHH
Confidence            333455678899999999999999999999877   8985 9999999999999876543332     456689999999


Q ss_pred             hhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE
Q 013008          150 VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF  229 (451)
Q Consensus       150 ~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (451)
                      +++++.+.+++++||++|+..+++.+.            ++..+|+.+...|.+...++..+.            ..+..
T Consensus       100 A~~~g~e~al~~~SG~~An~~~i~~l~------------~~~d~i~~d~~~h~s~~~G~~~~~------------a~~~~  155 (401)
T d1fc4a_         100 AAFLGMEDAILYSSCFDANGGLFETLL------------GAEDAIISDALNHASIIDGVRLCK------------AKRYR  155 (401)
T ss_dssp             HHHHTCSEEEEESCHHHHHHTTHHHHC------------CTTCEEEEETTCCHHHHHHHHTSC------------SEEEE
T ss_pred             HHhhcCCceEEecchhhhhHHHHHHhc------------CCCcEEEeCCcchHHHHccccccC------------ceEEE
Confidence            999999999999999999999998655            244455666677776655544432            23445


Q ss_pred             eeCCCHHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--ccccc
Q 013008          230 VEYGNIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHE  302 (451)
Q Consensus       230 ~~~~d~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~  302 (451)
                      ++++|.++++++++     ....++|++|+++++.|.+.|    |++|++||++||++||+||+|++ |..|.  .+..+
T Consensus       156 ~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~-g~~g~~G~G~~~  230 (401)
T d1fc4a_         156 YANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAV-GFVGENGRGSHE  230 (401)
T ss_dssp             ECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTT-TTSSTTSCCHHH
T ss_pred             EcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhcc-ccccCCCCccch
Confidence            67889888888775     345689999999999998888    99999999999999999999974 34443  23456


Q ss_pred             ccCCC--ccee--eecccccCCcccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcC-hHHHHHH----
Q 013008          303 HYGIF--PDIM--TLAKPLAGGLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN-PAFLASK----  371 (451)
Q Consensus       303 ~~~~~--pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~----  371 (451)
                      ++++.  +|++  |+||+++ |.+.|++++++++++.++..  ....+.+.+|..++|+.++++.+.. +++.+++    
T Consensus       231 ~~~~~~~~dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~  309 (401)
T d1fc4a_         231 YCDVMGRVDIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANA  309 (401)
T ss_dssp             HTTCTTCCSEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hccCCCCCeEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHH
Confidence            66663  5554  8999996 45679999999999988643  2334556778888889999987754 3344441    


Q ss_pred             ------HhCCCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHH
Q 013008          372 ------LARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       372 ------~~~~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~  437 (451)
                            +...+ .......+.++.+.+.  ..+..+.++|+++||++.+...      ...+|++++..||+||||++++
T Consensus       310 ~~~~~~l~~~g-~~~~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~  388 (401)
T d1fc4a_         310 RQFREQMSAAG-FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVE  388 (401)
T ss_dssp             HHHHHHHHHTT-CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred             HHHHhhhcccC-CccCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHH
Confidence                  11111 1112234455555552  3356799999999999875432      1459999999999999999999


Q ss_pred             HHHHHHHHHh
Q 013008          438 ILCKTLPVLD  447 (451)
Q Consensus       438 ~l~~~l~~~~  447 (451)
                      +|+++.+++.
T Consensus       389 al~ev~~~lg  398 (401)
T d1fc4a_         389 AFTRIGKQLG  398 (401)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhC
Confidence            9999998763

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.3e-36  Score=295.34  Aligned_cols=328  Identities=20%  Similarity=0.169  Sum_probs=250.9

Q ss_pred             CCceEEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhc
Q 013008           79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVAC  152 (451)
Q Consensus        79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~  152 (451)
                      +.+..+.+++|.++. .||++||||+|+.+   ||. .||++++++.+++++++.++.     .+.++.+.+|+++|+++
T Consensus        20 ~~~~~~~~~~g~~i~-~~g~~~l~f~s~dY---LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~   95 (383)
T d1bs0a_          20 RRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEW   95 (383)
T ss_dssp             CCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCeEE-ECCeEEEEEEcccc---cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHh
Confidence            344566899999997 79999999999887   998 599999999999999755422     23567799999999999


Q ss_pred             cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008          153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY  232 (451)
Q Consensus       153 ~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (451)
                      ++.|.+++++||+.|+..++..+.            .+..+++.+...|.+...+...++            ..+..+++
T Consensus        96 ~g~e~al~~~SG~~an~~~i~al~------------~~~d~v~~d~~~h~si~~g~~~~~------------~~~~~~~h  151 (383)
T d1bs0a_          96 LGYSRALLFISGFAANQAVIAAMM------------AKEDRIAADRLSHASLLEAASLSP------------SQLRRFAH  151 (383)
T ss_dssp             HTCSEEEEESCHHHHHHHHHHHHC------------CTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECT
T ss_pred             cCCCceEEecccchhhHHHHHhhc------------CCCceEEeeccccHHHhhccccCC------------CcceEecc
Confidence            999999999999999999998655            355677888888888766654432            34567889


Q ss_pred             CCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--cccccccCCCc
Q 013008          233 GNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHYGIFP  308 (451)
Q Consensus       233 ~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~~~~p  308 (451)
                      ||+++|++.+.  ..+..+|++|+++++.|.+.|    +++|.++|++||++||+||+|+ +|..|.  .+..+++++.+
T Consensus       152 nd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~gv~G~~g~G~~~~~~~~~  226 (383)
T d1bs0a_         152 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-TGVIGEQGRGSCWLQKVKP  226 (383)
T ss_dssp             TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSSGGGCCHHHHTTCCC
T ss_pred             hHHHHHHHHhcccCCCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeeccee-eeecCCcccchHHHcCCcc
Confidence            99999999986  346789999999999999988    9999999999999999999996 444443  23457888888


Q ss_pred             cee--eecccccCCcccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------------H
Q 013008          309 DIM--TLAKPLAGGLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------------K  371 (451)
Q Consensus       309 di~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------------~  371 (451)
                      +++  ++||++|  ...|+++++.++++.++..  ....+...+|..++|++++++.++..+..++             .
T Consensus       227 ~~~~~t~~ka~g--~~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~  304 (383)
T d1bs0a_         227 ELLVVTFGKGFG--VSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAG  304 (383)
T ss_dssp             SEEEEESSSTTS--SCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccc--ccccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            876  5677775  4568899999988888643  3445556778888899999988765432221             1


Q ss_pred             HhCCCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          372 LARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       372 ~~~~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                      +.+.+. ....+...++.+.+.  ..+.++.+.|+++||++.+...      ...+|++++..||+||||+++++|+.+
T Consensus       305 l~~~g~-~~~~~~s~Ii~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         305 VQDLPF-TLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             HTTSSC-EECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHhcCC-ccCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            222221 112333444445442  3456889999999999875432      146999999999999999999998764

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=100.00  E-value=1.1e-32  Score=270.50  Aligned_cols=331  Identities=16%  Similarity=0.154  Sum_probs=243.9

Q ss_pred             CceEEEeecccEE------EecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccCC-----CCCHHHHHHHH
Q 013008           80 APVVLASGKGCKL------YDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSNM-----YYSIPQIELAK  147 (451)
Q Consensus        80 ~p~~~~~~~G~~l------~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~  147 (451)
                      ....+.+..|.+.      .+.++++++||+|+.|   ||. .||++++++.+++++++.++..     +..+.+.+|++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndY---LGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~   97 (396)
T d2bwna1          21 TFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEA   97 (396)
T ss_dssp             CCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHH
T ss_pred             cccccccccCCCCcceEeecCCCCeEEEEEEcccc---cCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHH
Confidence            3344677777532      2234689999999988   998 6999999999999997654322     24567999999


Q ss_pred             HHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCe
Q 013008          148 RLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV  227 (451)
Q Consensus       148 ~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~  227 (451)
                      +|+++++.|.+++++||+.||..++.++...          .++.+|+.+...|.+...++.+++.            .+
T Consensus        98 ~lA~~~g~e~all~~sG~~An~~~i~~l~~~----------~~~d~i~~D~~~Hasi~~g~~ls~a------------~~  155 (396)
T d2bwna1          98 EIAGLHQKEAALVFSSAYNANDATLSTLRVL----------FPGLIIYSDSLNHASMIEGIKRNAG------------PK  155 (396)
T ss_dssp             HHHHHTTCSEEEEESCHHHHHHHHHHHHHHH----------STTCEEEEETTCCHHHHHHHHHSCC------------CE
T ss_pred             HHHHHhCCCceeeeecchHHHHHHHHHHhcc----------cCCCceeehhhhhhccchhhhcccc------------Cc
Confidence            9999999999999999999999999976422          2556888899999887777666542            34


Q ss_pred             eEeeCCCHHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--ccccc
Q 013008          228 NFVEYGNIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHE  302 (451)
Q Consensus       228 ~~~~~~d~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~  302 (451)
                      ..+++||+++++++++   +.....|++|.++++.|.+.|    |++|.+||++||++|++||+|+ ||..|+  .+..+
T Consensus       156 ~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs-~Gv~G~~G~G~~~  230 (396)
T d2bwna1         156 RIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHA-VGMYGPRGAGVAE  230 (396)
T ss_dssp             EEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSSTTSCCHHH
T ss_pred             eEeecchHHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeecccee-eeeeccccccchh
Confidence            5578899999988875   446678999999999999999    9999999999999999999994 655543  22345


Q ss_pred             ccCCC--ccee--eecccccCCcccccccccHHHHhhccCCCcc--CCCCCcHHHHHHHHHHHHHhcChHHHHH---HH-
Q 013008          303 HYGIF--PDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISNPAFLAS---KL-  372 (451)
Q Consensus       303 ~~~~~--pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~--~t~~~~~~~~aaa~aal~~~~~~~~~~~---~~-  372 (451)
                      ++++.  .|++  ||||++|+  ..|+|++++++++.++.....  .+-+.+|..+++++++++++..++..+.   +. 
T Consensus       231 ~~~~~~~~di~~gTlsKa~g~--~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~  308 (396)
T d2bwna1         231 RDGLMHRIDIFNGTLAKAYGV--FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQM  308 (396)
T ss_dssp             HHTCGGGCSEEEEESSSTTCS--CCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             hcCCceeeeeeeecccccccc--cccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            66653  3554  89999975  238889999999998654333  3344568888889999998866543321   11 


Q ss_pred             ------hCCC--CcceecccceeEEEEec--CChHHHHHHHH-HCCceeeecCC------CCEEEEeCCCCCCHHHHHHH
Q 013008          373 ------ARNP--HVKDVRGLGLIIGIEFD--VSATPVVDACR-DSGLLVLTAGK------GNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       373 ------~~~~--~~~~v~g~G~~~~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~  435 (451)
                            +.+.  ..........++.+.+.  ..+..++++|+ ++|+++.+...      ...+|++++..||+||||++
T Consensus       309 ~~~~~~~~l~~~g~~~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l  388 (396)
T d2bwna1         309 HAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGL  388 (396)
T ss_dssp             HHHHHHHHHHHHTCCBCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcCCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHH
Confidence                  1100  01111223445556553  23556788876 67999875432      15799999999999999999


Q ss_pred             HHHHHHH
Q 013008          436 VEILCKT  442 (451)
Q Consensus       436 l~~l~~~  442 (451)
                      +++|+++
T Consensus       389 ~~~L~~i  395 (396)
T d2bwna1         389 VHAMDLL  395 (396)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999875

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.96  E-value=6.5e-29  Score=245.37  Aligned_cols=325  Identities=15%  Similarity=0.089  Sum_probs=222.7

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~  169 (451)
                      +|+.+|||..|.+  .+. .+|.|++|+.+++++..+.+.  .+..+.+.++++++.+..+    .++|++|+|+++|+.
T Consensus        28 ~g~~vi~l~~G~p--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~  104 (388)
T d1j32a_          28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF  104 (388)
T ss_dssp             TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             CCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHH
Confidence            4677899988865  332 578999999999876433221  1222346677777766654    678999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      .++++..           +++|.|++.+|+|.++........+.....    +......+  .-|+++|++.+++.....
T Consensus       105 ~~~~~~~-----------~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~----~~~~~~~~--~~d~~~l~~~~~~~~~~~  167 (388)
T d1j32a_         105 NLMLAMI-----------EPGDEVIIPAPFWVSYPEMVKLAEGTPVIL----PTTVETQF--KVSPEQIRQAITPKTKLL  167 (388)
T ss_dssp             HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHTTCEEEEE----CCCGGGTT--CCCHHHHHHHCCTTEEEE
T ss_pred             HHHHHHh-----------CCCCEEEEcCCCcHHHHHHHHHhcCeEEEE----eccccccc--CCCHHHHHHhCCCCCeEE
Confidence            9998654           268999999999988765443333221110    11110000  027999999998655556


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccc-----cCCCcceeeeccccc-CCcc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEH-----YGIFPDIMTLAKPLA-GGLP  322 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~-----~~~~pdi~t~sK~lg-~G~~  322 (451)
                      ++++|. +++| .+++.+.+++|.++|++||+++|+||+|..+...+..+. ...     .+...-+.+|||.++ .|+|
T Consensus       168 ~~~~P~-NPTG-~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlR  245 (388)
T d1j32a_         168 VFNTPS-NPTG-MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR  245 (388)
T ss_dssp             EEESSC-TTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTC
T ss_pred             EECCCC-CCCC-cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhH
Confidence            666674 4444 468999999999999999999999999987755443211 111     111223457999998 7999


Q ss_pred             cccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-cee
Q 013008          323 IGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLI  387 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~  387 (451)
                      +||+++++++++.+.........+.++.++.++...++.  .++++++              .+++++.+....+. |++
T Consensus       246 vG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~  323 (388)
T d1j32a_         246 VGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN--SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFY  323 (388)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS--CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTE
T ss_pred             eEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEE
Confidence            999999999988775433344556778888887777763  2333322              23445544444444 667


Q ss_pred             EEEEec---CChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFD---VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       388 ~~~~~~---~~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      +|+++.   .+..+++++|+ ++||.+.|+.   ..+++|++.  +.++|++++++++|+++++.+
T Consensus       324 l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~--~~~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         324 MFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSY--ATDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             ECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEE--eCCHHHHHHHHHHHHHHHHHh
Confidence            777763   35667888887 4699999873   247899965  468999999999999999875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=5.5e-29  Score=245.40  Aligned_cols=324  Identities=19%  Similarity=0.151  Sum_probs=215.4

Q ss_pred             cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      .+|+++|||..|..  .|. .+|+|++|+.+++++..+.+.  .+..+.++++++++.+..+    .++|++|+|+++|+
T Consensus        28 ~~G~~vi~l~~g~p--~~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al  104 (382)
T d1b5pa_          28 RQGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL  104 (382)
T ss_dssp             HTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred             hCCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHH
Confidence            35778899988875  332 578999999999886433221  2223446677777766554    68999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++++.           +++|.|++.+|+|+++.......+. ....   .+..+...+  ..|++++++.+.+...+
T Consensus       105 ~~~~~~l~-----------~~gd~vl~~~P~y~~~~~~~~~~g~-~~~~---v~~~~~~~~--~~d~~~l~~~~~~~~~~  167 (382)
T d1b5pa_         105 FNLFQAIL-----------DPGDEVIVLSPYWVSYPEMVRFAGG-VVVE---VETLPEEGF--VPDPERVRRAITPRTKA  167 (382)
T ss_dssp             HHHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTC-EEEE---EECCGGGTT--CCCHHHHHTTCCTTEEE
T ss_pred             HHHHHHhC-----------CCCCEEEECCCCcHHHHHHHHHhcC-eEEE---Eeccccccc--CCCHHHHHHhCCCCCeE
Confidence            99999665           2689999999999988654433322 1111   011111000  12899999998764445


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccc--cCCCcceeeeccccc-CCccccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH--YGIFPDIMTLAKPLA-GGLPIGA  325 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~--~~~~pdi~t~sK~lg-~G~~iG~  325 (451)
                      .++++|. +++| .+++.+.+++|.++|++||+++|+||+|.++.+.+.......  .+...-+.++||.++ .|+|+||
T Consensus       168 i~~~~P~-NPTG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~  245 (382)
T d1b5pa_         168 LVVNSPN-NPTG-AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGY  245 (382)
T ss_dssp             EEEESSC-TTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEE
T ss_pred             EEECCCC-CCcc-hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEE
Confidence            5666664 4444 468999999999999999999999999998866665332211  122223447899998 7999999


Q ss_pred             ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh-cChHHHHH--------------HHhCCCCcceec-ccceeEE
Q 013008          326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI-SNPAFLAS--------------KLARNPHVKDVR-GLGLIIG  389 (451)
Q Consensus       326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~~~~~~~--------------~~~~~~~~~~v~-g~G~~~~  389 (451)
                      +++++++++.+.......+.+.+.+.+.++.+++... ....+.+.              .+...+ +.... ..|+++|
T Consensus       246 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~p~gg~~~~  324 (382)
T d1b5pa_         246 ACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG-LKAVRPSGAFYVL  324 (382)
T ss_dssp             EECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCSBTTEEE
T ss_pred             EEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcC-CeEecCCceEEEe
Confidence            9999998887754333445555666655555544311 11111111              111222 22233 3467788


Q ss_pred             EEec---CChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          390 IEFD---VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       390 ~~~~---~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      +++.   .+...+.+.|.++||.+.|+.   ..+++|++.  +.++|+|++++++|.++|
T Consensus       325 ~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~--~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         325 MDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENLRKALERFARVL  382 (382)
T ss_dssp             EECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHGGGGC
T ss_pred             EeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEE--cCCHHHHHHHHHHHHHhC
Confidence            8883   356778899999999999873   236788864  568999999999998753

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=8.2e-28  Score=237.33  Aligned_cols=325  Identities=13%  Similarity=0.095  Sum_probs=214.1

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~  170 (451)
                      +.+|||..|..  .++ .++.|++++.+++++....+  ..+..+.++++++++.+..+     .++|++|+|+++++..
T Consensus        25 ~dvi~l~~g~p--~~~-~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~  101 (388)
T d1gdea_          25 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM  101 (388)
T ss_dssp             TTCEECCCCSC--CSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred             CCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHH
Confidence            45788887765  343 57889999999987633222  11223346666666655332     5689999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++++.           +++|.|++.+|+|.++.......+.... .   .+..+.-.+  .-|+++|++.+.+.....+
T Consensus       102 ~~~~l~-----------~~gd~vlv~~P~y~~~~~~~~~~g~~~~-~---~~~~~~~~~--~~d~~~l~~~~~~~~~~i~  164 (388)
T d1gdea_         102 GLSAFL-----------KDGEEVLIPTPAFVSYAPAVILAGGKPV-E---VPTYEEDEF--RLNVDELKKYVTDKTRALI  164 (388)
T ss_dssp             HHTTTC-----------CTTCEEEEEESCCTTHHHHHHHHTCEEE-E---EECCGGGTT--CCCHHHHHHHCCTTEEEEE
T ss_pred             HHHHhc-----------CCCCEEEECCCCcHHHHHHHHHcCCEEE-E---eecccccCC--CCCHHHHHHhCccCCeEEE
Confidence            988654           2689999999999988665544332211 1   011110000  0279999999976444555


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc-CCC---cceeeeccccc-CCcccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-GIF---PDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~-~~~---pdi~t~sK~lg-~G~~iG  324 (451)
                      +++|. +++| .+++++.+++|.++|++||++||+||+|..|...+... ..... +..   .-+.+|||.++ .|+|+|
T Consensus       165 ~~~P~-NPtG-~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G  242 (388)
T d1gdea_         165 INSPC-NPTG-AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG  242 (388)
T ss_dssp             EESSC-TTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred             ECCCc-CCCC-CcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEE
Confidence            55554 4445 46899999999999999999999999998875444321 12222 221   22348999998 799999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceec-ccceeEE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVR-GLGLIIG  389 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~-g~G~~~~  389 (451)
                      |+++++++++.+.......+.+.+.+.+.++.++++......+.+.              .+.... +..+. ..|+++|
T Consensus       243 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~p~gg~fl~  321 (388)
T d1gdea_         243 FVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG-LPTVKPKGAFYIF  321 (388)
T ss_dssp             EEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCBTTEEC
T ss_pred             EEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhcc-ccccCCCceEEEE
Confidence            9999999888775544455566677777777666642111111111              112222 22233 3467788


Q ss_pred             EEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          390 IEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       390 ~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +++.   .+..++++.|+ +.||.+.|+..     .+++|+++  +.++|++++++++|.+++++.|
T Consensus       322 ~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~--~~~~e~l~~al~rL~~~l~e~k  386 (388)
T d1gdea_         322 PRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISY--ATAYEKLEEAMDRMERVLKERK  386 (388)
T ss_dssp             CBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEEC--CSCHHHHHHHHHHHHHHHHHTT
T ss_pred             EECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHHhcC
Confidence            8773   35678888876 46999988631     36789865  5689999999999999998754

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.95  E-value=9.9e-27  Score=230.07  Aligned_cols=328  Identities=13%  Similarity=0.070  Sum_probs=212.3

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAA  171 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~a  171 (451)
                      .|+.+|||..|.+  .|. .+|+|++|+.+++++..+++.....+.++++++++.+.++    .++|++|+|+++|+..+
T Consensus        29 ~g~~vi~l~~g~p--df~-~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~  105 (394)
T d1c7na_          29 VGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNA  105 (394)
T ss_dssp             CCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred             cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhh
Confidence            4677899877765  342 6899999999999875443333333346677777776654    78999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008          172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF  251 (451)
Q Consensus       172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi  251 (451)
                      +++..           ++++.|++.+|.|.++........+..... ....  .+..+.  .|.+.++..+...++++++
T Consensus       106 ~~~~~-----------~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~-~~~~--~~~~~~--~d~~~~~~~~~~~~~~~i~  169 (394)
T d1c7na_         106 VREFT-----------KPGDGVIIITPVYYPFFMAIKNQERKIIEC-ELLE--KDGYYT--IDFQKLEKLSKDKNNKALL  169 (394)
T ss_dssp             HHHHC-----------CTTCEEEECSSCCTHHHHHHHTTTCEEEEC-CCEE--ETTEEE--CCHHHHHHHHTCTTEEEEE
T ss_pred             hcccc-----------ccccccccccCcccchhhHHhhhhhccccc-cccc--cccccc--chhhhhhhhhccccceEEE
Confidence            99655           278999999999988765544433322111 0000  011111  2778888877655566655


Q ss_pred             EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc---cc---cCCCcceeeeccccc-CCcccc
Q 013008          252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH---EH---YGIFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~---~~---~~~~pdi~t~sK~lg-~G~~iG  324 (451)
                      +...++++|. +++.+.+++|+++|++||++||+||+|..+-..+.....   ..   ......+.++||.++ .|+|+|
T Consensus       170 l~~P~NPTG~-v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g  248 (394)
T d1c7na_         170 FCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMS  248 (394)
T ss_dssp             EESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCE
T ss_pred             ecccccccce-eccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccc
Confidence            5554555554 679999999999999999999999999887544432111   11   112223447899998 589999


Q ss_pred             ccccc-HHHHhhccCCCccCCCC-CcHHHHHHHHHHHHHhcChHHHHH--------------HH-hCCCCcceeccc-ce
Q 013008          325 AALVT-EKVASAINYGDHGSTFA-GSPLVCNAAIAVLDKISNPAFLAS--------------KL-ARNPHVKDVRGL-GL  386 (451)
Q Consensus       325 ~v~~~-~~i~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~~~~~~~--------------~~-~~~~~~~~v~g~-G~  386 (451)
                      +++++ +.+.+.+.......+.. .+...++++......  .+.+.++              ++ ...+.+....+. |+
T Consensus       249 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~  326 (394)
T d1c7na_         249 NIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE--CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTY  326 (394)
T ss_dssp             EEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSS
T ss_pred             cccccChhhhhhhhhhhhhccccccccccchhhhhhhcc--hhhhhcccccccchhhhhhhhhhhccccceeecCCCcee
Confidence            88775 56666554322222222 223333343333322  1222111              22 233444444444 56


Q ss_pred             eEEEEec---CChHHHHHHHHHC-CceeeecC---C--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          387 IIGIEFD---VSATPVVDACRDS-GLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       387 ~~~~~~~---~~~~~~~~~l~~~-Gv~~~~~~---~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ++|+++.   .+..++++.|+++ ||.+.|+.   .  .+++||+  ++.++|+|++++++|.++++++|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         327 LQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQESLERLNKALKDLK  394 (394)
T ss_dssp             EEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHHHHHHHHHHHHHhcC
Confidence            6778773   4678899999876 99998862   1  3678996  45689999999999999999875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=3.6e-26  Score=226.04  Aligned_cols=326  Identities=15%  Similarity=0.071  Sum_probs=213.4

Q ss_pred             CCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      +|+++|++..|.+.. ..+ .++.+++|+.+++++..+.+  ..+..+.++++++++.+.++    .+++++++|+++++
T Consensus        28 ~G~~vi~l~~G~P~~-~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~  106 (395)
T d1xi9a_          28 KGIKVIRLNIGDPVK-FDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEAL  106 (395)
T ss_dssp             TTCCCEECCCCCGGG-TTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             CCCCeEECCCCCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhh
Confidence            588899998886432 223 57889999999997643222  22223346777777777655    67899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..++++..           ++++.|++.+|+|+.+.......+...... +... ..+..    .|++++++.+.+....
T Consensus       107 ~~~~~~~~-----------~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v-~~~~-~~~~~----~d~~~~~~~~~~~~~~  169 (395)
T d1xi9a_         107 QLIFGALL-----------DPGDEILVPGPSYPPYTGLVKFYGGKPVEY-RTIE-EEDWQ----PDIDDIRKKITDRTKA  169 (395)
T ss_dssp             HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTTCEEEEE-EEEG-GGTSE----ECHHHHHHHCCTTEEE
T ss_pred             hhhhhhhc-----------CCCCEEEEcCCccccchhhhhhcCCEEEEE-eccc-ccccc----chHHHHHHhhcccccE
Confidence            99888655           268999999999998765544433221110 0000 00111    1789999998765555


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccC---CCcceeeeccccc-CCcccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG---IFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~---~~pdi~t~sK~lg-~G~~iG  324 (451)
                      .+++.|. +++| .+.+.+.+++|.++|++||+++|.||+|..+.+.+.........   -..-+.+|||.++ .|+|+|
T Consensus       170 v~l~~P~-NPTG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG  247 (395)
T d1xi9a_         170 IAVINPN-NPTG-ALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLG  247 (395)
T ss_dssp             EEEESSC-TTTC-CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCE
T ss_pred             EEecCCC-CCcc-chhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcE
Confidence            6666664 4445 46799999999999999999999999998764444322221111   1222348999998 599999


Q ss_pred             ccccc--HHHHhhccC---CCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-
Q 013008          325 AALVT--EKVASAINY---GDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-  384 (451)
Q Consensus       325 ~v~~~--~~i~~~~~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-  384 (451)
                      |+++.  ++.+..+..   .....+.+.+.+++.++..+++.  .++++++              .+++++.+....+. 
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g  325 (395)
T d1xi9a_         248 YMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG--PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQG  325 (395)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCB
T ss_pred             eeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCe
Confidence            97642  222222111   11223455667788888777762  2333332              33455544434443 


Q ss_pred             ceeEEEEec----CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          385 GLIIGIEFD----VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       385 G~~~~~~~~----~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      |+++|++++    .+..+++.+|+ +.||.+.|+..     .+++||+  ++.++|++++++++|.+++++
T Consensus       326 g~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         326 AFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV--FLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             SSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHhc
Confidence            677888874    24567777776 56999988631     3678985  467899999999999999875

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5e-25  Score=215.03  Aligned_cols=323  Identities=12%  Similarity=0.085  Sum_probs=205.0

Q ss_pred             EeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC-CCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHH
Q 013008          101 LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus       101 iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a  175 (451)
                      |+|..|..  -|. .+|.|++|+.+.++...+.+... ..+.++.+++++.++++    .++|++|+|+++|+..+++++
T Consensus         2 ~~~~~~~~--df~-~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l   78 (361)
T d1d2fa_           2 LPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW   78 (361)
T ss_dssp             EECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS
T ss_pred             cCcCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc
Confidence            55655554  243 67999999999887643322222 23346677777777665    679999999999999988865


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI  255 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~  255 (451)
                      .           +++|+|++.+|+|.++.......... ......... .+...   .|++.+++.+...+++++++.+.
T Consensus        79 ~-----------~~gd~Vlv~~P~y~~~~~~~~~~g~~-~~~v~~~~~-~~~~~---~d~~~~~~~~~~~~~~~i~l~~p  142 (361)
T d1d2fa_          79 S-----------ETGEGVVIHTPAYDAFYKAIEGNQRT-VMPVALEKQ-ADGWF---CDMGKLEAVLAKPECKIMLLCSP  142 (361)
T ss_dssp             S-----------CTTCEEEEEESCCHHHHHHHHHTTCE-EEEEECEEC-SSSEE---CCHHHHHHHHTSTTEEEEEEESS
T ss_pred             c-----------ccccccccccccccchhHHHHhhcce-EEeeccccc-ccccc---cccccchhhcccCCceeEEeccc
Confidence            4           26899999999998775433222211 100000000 11111   38999999998667777766655


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-cccc--CCCcceeeeccccc-CCccccccccc-H
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHY--GIFPDIMTLAKPLA-GGLPIGAALVT-E  330 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~--~~~pdi~t~sK~lg-~G~~iG~v~~~-~  330 (451)
                      ++++|. .++.+.+++|.++|++||+++|+||+|.+|-+.+.... ....  +...-+.++||.++ +|+++||+... +
T Consensus       143 ~NPTG~-~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~  221 (361)
T d1d2fa_         143 QNPTGK-VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENS  221 (361)
T ss_dssp             CTTTCC-CCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSH
T ss_pred             cccccc-ccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchh
Confidence            555664 67899999999999999999999999988744443211 1111  11222346799998 58999998654 3


Q ss_pred             HHHhhc-cCC-CccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCCCCcceeccc-ceeEEEEe
Q 013008          331 KVASAI-NYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARNPHVKDVRGL-GLIIGIEF  392 (451)
Q Consensus       331 ~i~~~~-~~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~~~~~~v~g~-G~~~~~~~  392 (451)
                      ...+.. ... ......+.+...+++++.+++..  +++.++               +.+..+.+....+. |+++|+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l  299 (361)
T d1d2fa_         222 SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDL  299 (361)
T ss_dssp             HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEEC
T ss_pred             HHHHHHhhhcccccccccchhhhHHHHHHHhhcc--chhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEc
Confidence            322222 111 11122233445555555555432  222211               22223333333334 66778887


Q ss_pred             c---CChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          393 D---VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       393 ~---~~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .   .+..+++++|+++ ||.+.|+..     .+++|+++  ..++|++++++++|.++++++|
T Consensus       300 ~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~--~~~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         300 RPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNA--GCPRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             GGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHHhcC
Confidence            3   4678899998875 999987621     25789964  5689999999999999999875

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1.2e-25  Score=220.69  Aligned_cols=324  Identities=18%  Similarity=0.152  Sum_probs=211.4

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE  169 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~  169 (451)
                      .|+++||+..|.+  .+. .++.+++++.+.+.+..+.+  ..+..+.+.++++++.+..+    .+++++|+|+++|+.
T Consensus        26 ~G~~vI~l~~G~p--~~~-~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~  102 (375)
T d1o4sa_          26 KGEDVINLTAGEP--DFP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF  102 (375)
T ss_dssp             TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred             CCCCeEECCCcCC--CCC-CCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHH
Confidence            5778899988866  343 57889999999887643322  12233446667777665544    779999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA  249 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa  249 (451)
                      .+++++.           ++++.|++.+|+|..+..............    +.......  ..|.+.++..........
T Consensus       103 ~~~~~l~-----------~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~  165 (375)
T d1o4sa_         103 NAFMALL-----------DPGDEVIVFSPVWVSYIPQIILAGGTVNVV----ETFMSKNF--QPSLEEVEGLLVGKTKAV  165 (375)
T ss_dssp             HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE----ECCGGGTT--CCCHHHHHHTCCTTEEEE
T ss_pred             HHHHHHh-----------CCCCEEEEccCccccchhhhhccccccccc----cccccccc--cchhHHHHHhhccCccEE
Confidence            9998665           268999999999987765443332211100    00000000  126788887776544455


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc----ccccCCCcceeeeccccc-CCcccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA----HEHYGIFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~----~~~~~~~pdi~t~sK~lg-~G~~iG  324 (451)
                      ++++| ++++|. ..+.+.+++|.++|++|+++||.||+|..+...+....    .+.++...-+.++||.++ +|+|+|
T Consensus       166 ~l~nP-~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G  243 (375)
T d1o4sa_         166 LINSP-NNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVG  243 (375)
T ss_dssp             EEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCE
T ss_pred             EEeCC-CCCccC-CCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccc
Confidence            55666 445554 57899999999999999999999999987643332211    122233344568999999 799999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcCh--HHH-HH------HHhCCCCcceeccc-ceeEEEEecC
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP--AFL-AS------KLARNPHVKDVRGL-GLIIGIEFDV  394 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~~~-~~------~~~~~~~~~~v~g~-G~~~~~~~~~  394 (451)
                      |+++++++++.+.......+...+...+.++...++.....  ..+ ++      .++... +....+. |+++|+++..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g-~~~~~p~gg~f~~~~~~~  322 (375)
T d1o4sa_         244 YLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMG-VKFVEPEGAFYLFFKVRG  322 (375)
T ss_dssp             EEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSBSSEEEEECSS
T ss_pred             cccccccchhhhhhhhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhcC-ceEecCCccEEEEEECCC
Confidence            99999998887654333334444555555444433321110  111 11      233332 3334344 6778888866


Q ss_pred             ChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          395 SATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       395 ~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +..+++.+|+ ++||++.|+.   ..+++||+.  ..++|++++++++|+++++
T Consensus       323 ~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~--~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         323 DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSF--ATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEE--cCCHHHHHHHHHHHHHHhc
Confidence            6777888876 4699999864   246889865  5689999999999999875

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.94  E-value=1.2e-25  Score=222.77  Aligned_cols=323  Identities=13%  Similarity=0.112  Sum_probs=208.2

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-----cccCCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-----HVSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN  168 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~  168 (451)
                      ..+|||..|.+...+ ...+.+.+++.+.++...     ++...+..+.+..+++++.+.++    .++|++|+|+++|+
T Consensus        29 ~~~i~l~~G~P~~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al  107 (403)
T d1wsta1          29 SDVISLAGGLPAPET-FPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQAL  107 (403)
T ss_dssp             SSCEECCCCCCCGGG-SCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHH
T ss_pred             CCcEECCCCCCCccc-cCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHH
Confidence            346888777653322 234567777777765421     22222333446777777776654    78999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC----CHHH----HHH
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG----NIEA----TRK  240 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~----le~  240 (451)
                      ..+++++.           .+++.|++.+|+|..+.......+.             .+..++.+    +...    .+.
T Consensus       108 ~~~~~~l~-----------~~gd~v~~~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~~~~~~~~~  163 (403)
T d1wsta1         108 DLIGRVFL-----------NPGDPIVVEAPTYLAAIQAFKYYDP-------------EFISIPLDDKGMRVDLLEEKLEE  163 (403)
T ss_dssp             HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTTCC-------------EEEEEEEETTEECHHHHHHHHHH
T ss_pred             HHHHHHHh-----------hcCCccccCCCcchhhhHHHhhccc-------------cceeEeecccCCccccccccchh
Confidence            99999654           2689999999999887655433221             11122211    2222    112


Q ss_pred             hcC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc----ccccCCCcceeeec
Q 013008          241 LIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA----HEHYGIFPDIMTLA  314 (451)
Q Consensus       241 ~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~----~~~~~~~pdi~t~s  314 (451)
                      ...  .....++++.+.++++| .+.+.+.+++|.++|++||++||+||+|..|.+.+....    .+.++....+.++|
T Consensus       164 ~~~~~~~~~~~~~~~~p~NPtG-~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~S  242 (403)
T d1wsta1         164 LRKQGKRVKIVYTVSTFQNPAG-VTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFS  242 (403)
T ss_dssp             HHHTTCCCCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEEST
T ss_pred             hhhccccccccccccccCCCCC-ccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccc
Confidence            221  22333444443444445 568999999999999999999999999988865554221    12223334455899


Q ss_pred             ccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCCC-Cc
Q 013008          315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARNP-HV  378 (451)
Q Consensus       315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~~-~~  378 (451)
                      |.++.|+|+||+++++++++.+.......+.+.++..+.+..+.++....+.+.++               +.+..+ .+
T Consensus       243 K~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  322 (403)
T d1wsta1         243 KILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGV  322 (403)
T ss_dssp             TTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred             ceecCcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCe
Confidence            99988999999999999988775433334455666666665555543222222221               222222 23


Q ss_pred             cee-cccceeEEEEec--CChHHHHHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          379 KDV-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       379 ~~v-~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ... +..|+++|+++.  .+...+++.|.++||++.|+.       ..+++||+++. .+++++++++++|.+++++..
T Consensus       323 ~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~~~  400 (403)
T d1wsta1         323 EWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAETIKEEM  400 (403)
T ss_dssp             EECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCceeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHHHH
Confidence            222 344788888884  356778899999999998862       13689997653 589999999999999998643

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.93  E-value=9.6e-25  Score=217.34  Aligned_cols=325  Identities=17%  Similarity=0.134  Sum_probs=211.5

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccc-----cCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-----SNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANE  169 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~  169 (451)
                      .||+..|...  + ..++.+++++.+++++....     ...+..+.++.+++++.+.++     .++|++|+|+++|+.
T Consensus        28 ~I~L~~G~Pd--~-~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~  104 (418)
T d2r5ea1          28 PLNLGQGFPD--Y-HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY  104 (418)
T ss_dssp             CEECSSSCCS--S-CCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             CEEccCCCCC--C-CCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence            4787777642  2 25688999999998753211     111223447778888877654     478999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEe---eCCCHHHHHHhcCCCC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV---EYGNIEATRKLIQPGK  246 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~~le~~l~~~~  246 (451)
                      .+++++.           ++++.|++.+|+|+++.......+...... +..+........   ...+.+.+++.... .
T Consensus       105 ~~~~~l~-----------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  171 (418)
T d2r5ea1         105 ATIQGHV-----------DEGDEVIIIEPFFDCYEPMVKAAGGIPRFI-PLKPNKTGGTISSADWVLDNNELEALFNE-K  171 (418)
T ss_dssp             HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECEESCCSSCEEGGGEECCHHHHHHHCCT-T
T ss_pred             hhhhhcc-----------ccccceeccccccchhhHHHHHcCCeEEEE-EecccccccchhhhhhhhhHHHHhhhhhc-c
Confidence            9999765           279999999999998875554443322110 111111111000   01267888887754 5


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc--cccccCCCcc---eeeeccccc-CC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHEHYGIFPD---IMTLAKPLA-GG  320 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~~~~~~pd---i~t~sK~lg-~G  320 (451)
                      ++++++.+.++++|. +++++.+++|.++|++||+++|.||+|..+...+...  .....+....   +.++||.++ .|
T Consensus       172 ~~~~~i~~p~NPtG~-~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pG  250 (418)
T d2r5ea1         172 TKMIIINTPHNPLGK-VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG  250 (418)
T ss_dssp             EEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG
T ss_pred             ccceecCCcCccccc-cccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCC
Confidence            555555555555554 6799999999999999999999999998774443211  1112222222   347899998 69


Q ss_pred             cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh----c-ChHHHHH--------------HHhCCCCccee
Q 013008          321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI----S-NPAFLAS--------------KLARNPHVKDV  381 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~----~-~~~~~~~--------------~~~~~~~~~~v  381 (451)
                      +|+||+++++++++.+.......+++.+.+.+.++.+.+...    + .+.++++              .+++.. +...
T Consensus       251 lRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~  329 (418)
T d2r5ea1         251 WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG-MNPT  329 (418)
T ss_dssp             GCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTT-CEEE
T ss_pred             cccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcC-Cccc
Confidence            999999999999888765444556677777777666555421    1 1222221              223332 2223


Q ss_pred             -cccceeEEEEec--------------CChHHHHHHHHH-CCceeeecCC----------CCEEEEeCCCCCCHHHHHHH
Q 013008          382 -RGLGLIIGIEFD--------------VSATPVVDACRD-SGLLVLTAGK----------GNVVRLVPPLIISEQELDQA  435 (451)
Q Consensus       382 -~g~G~~~~~~~~--------------~~~~~~~~~l~~-~Gv~~~~~~~----------~~~iri~~~~~~t~e~i~~~  435 (451)
                       +..|+++|+++.              .+..+|++.|++ .||.+.|+..          .+++|++.  +.++|+|+++
T Consensus       330 ~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~--~~~~e~l~~a  407 (418)
T d2r5ea1         330 VPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF--FKKDENLQKA  407 (418)
T ss_dssp             ECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEEC--CSCHHHHHHH
T ss_pred             CCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEe--cCCHHHHHHH
Confidence             344677788762              234578888876 4999988621          15789865  5689999999


Q ss_pred             HHHHHHHHH
Q 013008          436 VEILCKTLP  444 (451)
Q Consensus       436 l~~l~~~l~  444 (451)
                      +++|++.+.
T Consensus       408 ~~rl~~~lg  416 (418)
T d2r5ea1         408 AEILRKWKG  416 (418)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999998764

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.93  E-value=3.2e-25  Score=215.99  Aligned_cols=309  Identities=16%  Similarity=0.177  Sum_probs=204.1

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a  175 (451)
                      .++|||.+|.  +++| .+|.+++++.+.+..+..    |++....+|.+.++++++  .++|++++|+++++..++.+.
T Consensus        22 ~~~idls~~~--np~~-~p~~~~~a~~~~~~~~~~----Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~   94 (355)
T d1lc5a_          22 DQLLDFSANI--NPLG-MPVSVKRALIDNLDCIER----YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL   94 (355)
T ss_dssp             GGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH
T ss_pred             hheEEccCCC--CCCC-CCHHHHHHHHHHHHHhcc----CCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhh
Confidence            3589998863  4677 578899999998776533    232234578888888887  678999999998887766543


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccc
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI  255 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~  255 (451)
                      .             ++.+++..|.|+.+............ .   .+......   +...+++++.+.++..++++++| 
T Consensus        95 ~-------------~~~~~v~~p~~~~~~~~~~~~~~~~~-~---v~~~~~~~---~~~~~~~~~~~~~~~~~v~l~nP-  153 (355)
T d1lc5a_          95 K-------------PRRAMIVTPGFAEYGRALAQSGCEIR-R---WSLREADG---WQLTDAILEALTPDLDCLFLCTP-  153 (355)
T ss_dssp             C-------------CSEEEEEESCCTHHHHHHHHTTCEEE-E---EECCGGGT---TCCCTTHHHHCCTTCCEEEEESS-
T ss_pred             c-------------cccccccCCccceeccccccccccce-e---eeeeccCC---ccceeeeeeccccccceeeeecc-
Confidence            2             55667778888766544333222111 0   01110000   01123455555543344444555 


Q ss_pred             cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc--cccCCCcceeeeccccc-CCcccccccccHH-
Q 013008          256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH--EHYGIFPDIMTLAKPLA-GGLPIGAALVTEK-  331 (451)
Q Consensus       256 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~--~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~-  331 (451)
                      ++++|. ..+.+++++|.++|++|++++|.||+|..|...+.....  ...+....+.++||+++ +|+|+||++++++ 
T Consensus       154 ~NPtG~-~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~  232 (355)
T d1lc5a_         154 NNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDA  232 (355)
T ss_dssp             CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHH
T ss_pred             cCcccc-cchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchh
Confidence            555565 579999999999999999999999999887554432211  11122233458999998 7999999998754 


Q ss_pred             HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCChH
Q 013008          332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVSAT  397 (451)
Q Consensus       332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~~~  397 (451)
                      +.+.++.  ...+++.+.+++.++.++|+   ..++..+              .+.+.+.+...++.|.++++.++.+..
T Consensus       233 ~~~~~~~--~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~f~~~~~~~~~~  307 (355)
T d1lc5a_         233 AMARMRR--QQMPWSVNALAALAGEVALQ---DSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCEREDI  307 (355)
T ss_dssp             HHHHHHH--HSCTTCSCHHHHHHHHHGGG---CHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEEEESCTTC
T ss_pred             hhHHHHh--hcCCcccccccccccccccc---ccchhHHHHHHHHHHHHHHHHHHhhcCCcEECCCCCEEEEEECCCCHH
Confidence            4454442  33456778888888887775   2222211              234455555556678888998876667


Q ss_pred             HHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          398 PVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       398 ~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ++++.|.++||++.|+..     .+++||++.   +++++++++++|+++|
T Consensus       308 ~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         308 DLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVL  355 (355)
T ss_dssp             CHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence            799999999999987631     368999754   7899999999988764

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=5.3e-25  Score=219.37  Aligned_cols=327  Identities=12%  Similarity=0.105  Sum_probs=212.9

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-----cccCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-----HVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGT  165 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~  165 (451)
                      .++.+|||..|.+...+ ...+.+.+++.+.++...     +....+..+.++++++++.+..+     .++|++|+|++
T Consensus        36 ~~~~~I~l~~G~Pd~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~  114 (420)
T d1vp4a_          36 ADKDAISFGGGVPDPET-FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ  114 (420)
T ss_dssp             TSTTCEECCCCSCCGGG-SCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred             CCCCcEecCCcCCCCcc-CCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence            45678999887653322 234567777777766532     21222233346677777776543     67899999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHh
Q 013008          166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKL  241 (451)
Q Consensus       166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~  241 (451)
                      +|+..++.+..           +++|.|++.+|+|..+.......+..             +..+|.    .|++.++..
T Consensus       115 ~al~~~~~~~~-----------~~Gd~Vlv~~P~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~l~~~  170 (420)
T d1vp4a_         115 QALDLIGKLFL-----------DDESYCVLDDPAYLGAINAFRQYLAN-------------FVVVPLEDDGMDLNVLERK  170 (420)
T ss_dssp             HHHHHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTTTCE-------------EEEEEEETTEECHHHHHHH
T ss_pred             hhHHHHHHhhh-----------ccccccccccccccchhHHHHHHhhh-------------cccccccccccccchhhhh
Confidence            99999988654           27899999999998775443322211             111221    145555443


Q ss_pred             cC-------CCCeEEEEEcc-ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc----ccccCCCcc
Q 013008          242 IQ-------PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA----HEHYGIFPD  309 (451)
Q Consensus       242 l~-------~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~----~~~~~~~pd  309 (451)
                      +.       ..++..+++-| .++++| ...+.+.+++|.++|++|++++|+||+|.+|.+.+....    ....+...-
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~p~NPtG-~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~  249 (420)
T d1vp4a_         171 LSEFDKNGKIKQVKFIYVVSNFHNPAG-VTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVL  249 (420)
T ss_dssp             HHHHHHTTCGGGEEEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEE
T ss_pred             hhhhHHHhhccccceeeEecCCCCccc-hhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeE
Confidence            32       12344444444 344445 468999999999999999999999999998865554211    111222233


Q ss_pred             eeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHH--------HH-------HHh-
Q 013008          310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL--------AS-------KLA-  373 (451)
Q Consensus       310 i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~--------~~-------~~~-  373 (451)
                      +.+++|.+..|+|+||+++++++++.+.......+.+.+.+.++++...++.....+++        ++       +.+ 
T Consensus       250 ~~s~sk~~~~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  329 (420)
T d1vp4a_         250 LNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEY  329 (420)
T ss_dssp             EEESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccccccccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhh
Confidence            34677877789999999999999988765444445566777777776666532111111        11       222 


Q ss_pred             --CCCCcceeccc-ceeEEEEec--CChHHHHHHHHHCCceeeecC------C-CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          374 --RNPHVKDVRGL-GLIIGIEFD--VSATPVVDACRDSGLLVLTAG------K-GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       374 --~~~~~~~v~g~-G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~------~-~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                        ..+.+...++. |+++|+.+.  .+..++++.|.++||.+.|+.      . .+++|++++ ..++|++++++++|.+
T Consensus       330 ~~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL~~  408 (420)
T d1vp4a_         330 FSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRLRE  408 (420)
T ss_dssp             STTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHHHH
T ss_pred             hccCCCcEEecCCceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHHHH
Confidence              33444444444 578888884  356678889999999998862      1 357999754 3588999999999999


Q ss_pred             HHHHHhhc
Q 013008          442 TLPVLDSN  449 (451)
Q Consensus       442 ~l~~~~~~  449 (451)
                      ++++.+.+
T Consensus       409 ~l~~~~~~  416 (420)
T d1vp4a_         409 VVLEYGKE  416 (420)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhHh
Confidence            99887643

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=2.3e-25  Score=213.90  Aligned_cols=321  Identities=16%  Similarity=0.105  Sum_probs=205.0

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHh
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ  179 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~  179 (451)
                      +|||.+-+.+.    .+|++++|+.++..  +.. .++..+...+|+++|+++++.+++++++||++|++.|+++++.  
T Consensus         1 ~~~~~~~~~t~----p~p~v~~A~~~a~~--g~~-~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~--   71 (343)
T d1m6sa_           1 MIDLRSDTVTK----PTEEMRKAMAQAEV--GDD-VYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ--   71 (343)
T ss_dssp             CEECSCGGGCC----CCHHHHHHHHTCCC--CCG-GGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCC--
T ss_pred             CcccccccCCC----CCHHHHHHHHhhhc--CCc-ccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhc--
Confidence            37887766443    47999999876532  111 1234566899999999999999999999999999999997762  


Q ss_pred             hhcCCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEEEEEc
Q 013008          180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVE  253 (451)
Q Consensus       180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aavi~e  253 (451)
                               +++.+++..+.++.......... ....+    .+.....   ...|++.+++.+..     ..+..++++
T Consensus        72 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~  135 (343)
T d1m6sa_          72 ---------RGDEVILEADSHIFWYEVGAMAVLSGVMP----HPVPGKN---GAMDPDDVRKAIRPRNIHFPRTSLIAIE  135 (343)
T ss_dssp             ---------TTCEEEEETTCHHHHSSTTHHHHHTCCEE----EEECEET---TEECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred             ---------cCCceeccccccceeeeccccccccccee----ecccccc---CccCHHHHHHhhhhhhcccccccccccc
Confidence                     47778877776644332221111 11110    0000000   01278888888862     346677777


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccC-CcccccccccHHH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGAALVTEKV  332 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i  332 (451)
                      +..++.|..+++.+++++|+++|++||++++.||+++++......+.........+..+++|..+. |.+.++++..++.
T Consensus       136 ~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  215 (343)
T d1m6sa_         136 NTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDF  215 (343)
T ss_dssp             SSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHH
T ss_pred             cccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHH
Confidence            777777777889999999999999999999999999865333322222222223455666666653 4677777777776


Q ss_pred             HhhccCC--CccCCCCCcHHHHHHHHHHHHHhcC-h-HHHHH------HHhCCCCcceec-ccceeEEEEec---CChHH
Q 013008          333 ASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN-P-AFLAS------KLARNPHVKDVR-GLGLIIGIEFD---VSATP  398 (451)
Q Consensus       333 ~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~-~-~~~~~------~~~~~~~~~~v~-g~G~~~~~~~~---~~~~~  398 (451)
                      +..+...  ....+.......+++.......... . ...++      .+...+...... ....++++.++   ..+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~  295 (343)
T d1m6sa_         216 IERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHG  295 (343)
T ss_dssp             HHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHH
T ss_pred             HhhhHhhCcccccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcccHHH
Confidence            6554322  1223333333333333332222211 1 11111      111222121122 23456777763   45688


Q ss_pred             HHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       399 ~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      |++.|+++||++.+.+. +.+||+++..+|+||||+++++|+++++++
T Consensus       296 l~~~L~~~Gi~v~~~~~-~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         296 FIEALRNSGVLANAVSD-TEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             HHHHHHHHTEECEEEET-TEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999998876 889999999999999999999999999886

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=8.4e-25  Score=214.02  Aligned_cols=315  Identities=15%  Similarity=0.093  Sum_probs=208.0

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARK  177 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~  177 (451)
                      .||+..|.+  .++ .+|.+++|+++.+++...   +.......+|.+.++++++  .++|++|+|+++|+..+++.+. 
T Consensus        27 ~I~ls~g~p--~~~-~p~~i~~al~~~l~~~~~---Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~-   99 (368)
T d1v2da_          27 AVNLGQGFP--SNP-PPPFLLEAVRRALGRQDQ---YAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV-   99 (368)
T ss_dssp             CEECCCCSC--SSC-CCHHHHHHHHHHTTTSCS---CCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC-
T ss_pred             CEEecCCCC--CCC-CCHHHHHHHHHHhhcccC---CCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc-
Confidence            488877654  232 678999999998865321   1122225577788888876  7799999999999999998654 


Q ss_pred             HhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccC
Q 013008          178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG  257 (451)
Q Consensus       178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~  257 (451)
                                .+++.|++.+|+|+.+.............. .. +...+...   .|++.+++.+.+.....+++.|. +
T Consensus       100 ----------~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~---~d~~~l~~~~~~~~~~i~~~~p~-N  163 (368)
T d1v2da_         100 ----------GPGDEVVVLEPFFDVYLPDAFLAGAKARLV-RL-DLTPEGFR---LDLSALEKALTPRTRALLLNTPM-N  163 (368)
T ss_dssp             ----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-EC-EEETTEEE---CCHHHHHTTCCTTEEEEEEESSC-T
T ss_pred             ----------cccccccccCCcchhhhhHHHhcCCcccee-cc-cccccccc---CCHHHHHHhhccCceEEEEcCCC-C
Confidence                      268899999999987765544333211100 00 00001111   28999999998655556666664 4


Q ss_pred             CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccc--cCCCcceeeeccccc-CCcccccccccHHHHh
Q 013008          258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH--YGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS  334 (451)
Q Consensus       258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~--~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~  334 (451)
                      ++| ...+.+.+++|.++|++||+++|.||+|..+...........  .+....+.++||.++ .|+|+||+++++++++
T Consensus       164 PtG-~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~  242 (368)
T d1v2da_         164 PTG-LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMP  242 (368)
T ss_dssp             TTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHH
T ss_pred             ccc-ccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccc
Confidence            445 467999999999999999999999999975433332211111  122233457888887 4899999999999888


Q ss_pred             hccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ceeEEEEecCChHHH
Q 013008          335 AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GLIIGIEFDVSATPV  399 (451)
Q Consensus       335 ~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~~~~~~~~~~~  399 (451)
                      .+.......+.+.+++.+.++.+++.......+.++              .++.++ +....+. |+++|++++.  .+.
T Consensus       243 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~p~g~~~~~~~l~~--~~~  319 (368)
T d1v2da_         243 RLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPEGTYFLMAELPG--WDA  319 (368)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCSBSSEEEEECTT--CCH
T ss_pred             hhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcC-cEEecCCceeEEEEeCCc--cHH
Confidence            776544555667778887777777754332222222              223332 3334444 6778887742  223


Q ss_pred             HHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          400 VDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       400 ~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .+.|.++||.+.|+.       ..+++||+.  +.++|++++++++|++++
T Consensus       320 ~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~--~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         320 FRLVEEARVALIPASAFYLEDPPKDLFRFAF--CKTEEELHLALERLGRVV  368 (368)
T ss_dssp             HHHHHHTCEECEEGGGGCSSSCCTTEEEEEC--CSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCEEEEechhhCCCCCCCCEEEEEe--cCCHHHHHHHHHHHHHhC
Confidence            345668899998852       136799964  568999999999999864

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.93  E-value=3.2e-24  Score=213.05  Aligned_cols=330  Identities=13%  Similarity=0.059  Sum_probs=206.2

Q ss_pred             cCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhccc-cc--CCCCCHHHHHHHHHHhhcc----------CCCeEEe
Q 013008           95 AEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTH-VS--NMYYSIPQIELAKRLVACS----------FADRVFF  160 (451)
Q Consensus        95 ~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~-~~--~~~~~~~~~~l~~~l~~~~----------~~e~v~~  160 (451)
                      ..++.+|||..|........ ..+.+++++.+.++.... .+  ..+..+.++.+++++.+.+          ..++|++
T Consensus        27 ~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~i  106 (412)
T d1bw0a_          27 PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVL  106 (412)
T ss_dssp             CSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEE
T ss_pred             CCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEE
Confidence            45567889888765322211 356788888887765321 11  1223334667777776653          2679999


Q ss_pred             cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHH
Q 013008          161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK  240 (451)
Q Consensus       161 ~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~  240 (451)
                      |+|+++|+..+++++.           +++|.|++.+|+|+++.......+.... .   .+..+...+.  .|++.+++
T Consensus       107 t~G~~~al~~~~~~l~-----------~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~-~---v~~~~~~~~~--~~~~~l~~  169 (412)
T d1bw0a_         107 CSGGSHGILMAITAIC-----------DAGDYALVPQPGFPHYETVCKAYGIGMH-F---YNCRPENDWE--ADLDEIRR  169 (412)
T ss_dssp             ESHHHHHHHHHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEE-E---EEEEGGGTTE--ECHHHHHH
T ss_pred             ecccccchhhhhhhhh-----------ccccceeeeeccchhhhhhhhccCcccc-c---cccccccccc--hhhHHHHh
Confidence            9999999999998654           2689999999999887655443332211 1   0111100000  27889998


Q ss_pred             hcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cc-cc---cCCCcce---ee
Q 013008          241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-EH---YGIFPDI---MT  312 (451)
Q Consensus       241 ~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~---~~~~pdi---~t  312 (451)
                      .+.+.....++++|.|++|  .+.+.+.+++|.++|++|+++||+||+|.+|.+.|... .. ..   .......   .+
T Consensus       170 ~~~~~~~~~~l~np~NPtG--~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  247 (412)
T d1bw0a_         170 LKDDKTKLLIVTNPSNPCG--SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGG  247 (412)
T ss_dssp             HCCTTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEE
T ss_pred             hhhcccccccccccccccc--ccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccc
Confidence            8876445555565655554  35799999999999999999999999999886655321 11 11   1111112   25


Q ss_pred             eccccc-CCcccccccccHHHH------hhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------H
Q 013008          313 LAKPLA-GGLPIGAALVTEKVA------SAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------K  371 (451)
Q Consensus       313 ~sK~lg-~G~~iG~v~~~~~i~------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~  371 (451)
                      +||.++ .|+|+||++++++..      ..... ....+.+.++..++++.+.+.. ..+++.++              .
T Consensus       248 ~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~  325 (412)
T d1bw0a_         248 TAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR-VGMLVCGPCTVVQAALGEALLN-TPQEHLDQIVAKIEESAMYLYNH  325 (412)
T ss_dssp             STTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH-HHHHHTCSCHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccCccCCCCcccccccchhhcchhhhhhhcc-ccccccCCchhhhhhccccccc-ccccccccccchhHHHHHHHHHH
Confidence            899998 589999998764322      22111 1122333444555444443321 22223222              2


Q ss_pred             HhCCCCcceecc-cceeEEEEec-------CChHHHHHHHHH-CCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHH
Q 013008          372 LARNPHVKDVRG-LGLIIGIEFD-------VSATPVVDACRD-SGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEIL  439 (451)
Q Consensus       372 ~~~~~~~~~v~g-~G~~~~~~~~-------~~~~~~~~~l~~-~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l  439 (451)
                      +.+.+.+....+ .|+++|+.++       .+..+++++|++ .||.+.|+.   ..+++||+  ++.++|+++++++||
T Consensus       326 l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis--~~~~~e~l~eal~Rl  403 (412)
T d1bw0a_         326 IGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT--TTRPVEVYREAVERI  403 (412)
T ss_dssp             HTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHH
T ss_pred             HHHhcCceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EcCCHHHHHHHHHHH
Confidence            233344444444 4667777763       246788998886 599999863   23688985  467899999999999


Q ss_pred             HHHHHHHh
Q 013008          440 CKTLPVLD  447 (451)
Q Consensus       440 ~~~l~~~~  447 (451)
                      ++++++..
T Consensus       404 ~~~l~~~~  411 (412)
T d1bw0a_         404 KAFCQRHA  411 (412)
T ss_dssp             HHHHHHHB
T ss_pred             HHHHHhcC
Confidence            99997643

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.4e-24  Score=210.42  Aligned_cols=324  Identities=14%  Similarity=0.124  Sum_probs=206.6

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA  170 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~  170 (451)
                      .|+.+||+..|.+.  +. .++.+.+++.+.......+ ...+..+.++.+++++.+..+    .++|++|+|+++++..
T Consensus        26 ~g~~vi~l~~G~p~--~~-~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~  102 (389)
T d2gb3a1          26 RGVRIHHLNIGQPD--LK-TPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILF  102 (389)
T ss_dssp             TTCEEEECSSCCCC--SC-CCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHH
T ss_pred             cCCCEEECCCCCCC--CC-CCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccc
Confidence            58888999887663  32 4677888887754432211 112223346778888877654    7799999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      ++++..           ++++.|++.+|+|..+..............    +.......   .+.+.+...+.+ +++++
T Consensus       103 ~~~~l~-----------~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~----~~~~~~~~---~~~~~~~~~~~~-~~~~~  163 (389)
T d2gb3a1         103 SFAVIA-----------NPGDEILVLEPFYANYNAFAKIAGVKLIPV----TRRMEEGF---AIPQNLESFINE-RTKGI  163 (389)
T ss_dssp             HHHHHC-----------CTTCEEEEEESCCTHHHHHHHHHTCEEEEE----ECCGGGTS---CCCTTGGGGCCT-TEEEE
T ss_pred             cccccc-----------cCCCeEEEeCCCCccccccccccCcccccc----cccccccc---chhhhhhhhccc-CccEE
Confidence            998665           268999999999987765443333211100    00000000   122334444444 45555


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc--eeeeccccc-CCccccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD--IMTLAKPLA-GGLPIGAAL  327 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd--i~t~sK~lg-~G~~iG~v~  327 (451)
                      ++...++++|. ..+.+.+++|.++|++||+++|.||+|..+...+.............  +.++||.++ +|+|+||++
T Consensus       164 ~l~nP~NPtG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~  242 (389)
T d2gb3a1         164 VLSNPCNPTGV-VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLI  242 (389)
T ss_dssp             EEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred             EeCCCCccccc-cchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeee
Confidence            54444445554 56999999999999999999999999988866554322222111111  336789987 589999999


Q ss_pred             ccHH-HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCccee-cccceeEEEE
Q 013008          328 VTEK-VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDV-RGLGLIIGIE  391 (451)
Q Consensus       328 ~~~~-i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v-~g~G~~~~~~  391 (451)
                      ++++ +...+.. .....++.+++.+.++.+.+..  .+.+++.              .+++++..... ...|+++|+.
T Consensus       243 ~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~  319 (389)
T d2gb3a1         243 TRNEELISHAMK-LAQGRLAPPLLEQIGSVGLLNL--DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAE  319 (389)
T ss_dssp             CSCHHHHHHHHH-HHHHSCCCCHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEE
T ss_pred             ccchhHHHHHhh-hhhccccccccccccccccccc--cchhcccccccccccchhhhhhhhhhccccccCCCceEEEEEe
Confidence            8654 4444322 2234455677777777766642  2333322              33445533323 3557888888


Q ss_pred             ec-CChHHHHHHHHHC------CceeeecC-------C-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          392 FD-VSATPVVDACRDS------GLLVLTAG-------K-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       392 ~~-~~~~~~~~~l~~~------Gv~~~~~~-------~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +. .++.++++.|+++      ||.+.|+.       . .+++||+  ++.++|++++++++|.+++++..
T Consensus       320 lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis--~~~~~~~l~~a~~~L~~~lk~f~  388 (389)
T d2gb3a1         320 LPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA--CVLEKDLLSRAIDVLMEGLKMFC  388 (389)
T ss_dssp             CSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE--CCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHHHhh
Confidence            84 4678899988864      66676652       1 2578986  45789999999999999998753

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.7e-24  Score=210.33  Aligned_cols=327  Identities=13%  Similarity=0.094  Sum_probs=210.0

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc--cc--cCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HV--SNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEA  167 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~--~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA  167 (451)
                      ++.+||+..|..  .+. .++.+++++.+++.+..  +.  ...+..+.++.+++++.+.++     .++|++|+|+++|
T Consensus        24 ~~dvI~l~~G~p--~~~-~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a  100 (418)
T d1w7la_          24 EHDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA  100 (418)
T ss_dssp             TSCCEECCCCSC--SSC-CCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred             CCCCEECCCCCC--CCC-CCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence            345789888875  232 46779999999886521  11  112223346777777776655     2479999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCe--eEee---CCCHHHHHHhc
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV--NFVE---YGNIEATRKLI  242 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~d~~~le~~l  242 (451)
                      +..+++++.           .+++.|++.+|+|+.+.......+...... ...+.....  ....   ..|.+++....
T Consensus       101 l~~~~~~l~-----------~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  168 (418)
T d1w7la_         101 LFTAFQALV-----------DEGDEVIIIEPFFDCYEPMTMMAGGRPVFV-SLKPGPIQNGELGSSSNWQLDPMELAGKF  168 (418)
T ss_dssp             HHHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECEECC---CCSEEGGGEECCHHHHHHHC
T ss_pred             HHHHHHhhc-----------cCCceeeccccccchhHHHHHHcCCEeecc-ccccccccccccccccCcccchhhhhccc
Confidence            999998665           268999999999998875554444322111 011100000  0000   01566676666


Q ss_pred             CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cc-cccCCCc---ceeeecccc
Q 013008          243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-EHYGIFP---DIMTLAKPL  317 (451)
Q Consensus       243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~~~~~p---di~t~sK~l  317 (451)
                      .+ .++++++...++++| ...+++.+++|.++|++|++++|.||+|.++.+.+... .. ...+..+   -+.++||.+
T Consensus       169 ~~-~~~~i~~~~p~NPtG-~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  246 (418)
T d1w7la_         169 TS-RTKALVLNTPNNPLG-KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF  246 (418)
T ss_dssp             CT-TEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred             cc-cccceeccCcCCccc-ccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccc
Confidence            54 444444433344444 46799999999999999999999999999886555421 11 1112222   244789999


Q ss_pred             c-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc---C--hHHHHH--------------HHhCCCC
Q 013008          318 A-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---N--PAFLAS--------------KLARNPH  377 (451)
Q Consensus       318 g-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~--------------~~~~~~~  377 (451)
                      + .|+|+||+++++++++.+.......+++.+.+.+.++.+++....   +  .++...              .+++.+ 
T Consensus       247 ~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-  325 (418)
T d1w7la_         247 SATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG-  325 (418)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             cCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcC-
Confidence            8 589999999999998887655455667778888888877775321   1  112111              223332 


Q ss_pred             cceec-ccceeEEEEec---------------CChHHHHHHHHH-CCceeeecCC----------CCEEEEeCCCCCCHH
Q 013008          378 VKDVR-GLGLIIGIEFD---------------VSATPVVDACRD-SGLLVLTAGK----------GNVVRLVPPLIISEQ  430 (451)
Q Consensus       378 ~~~v~-g~G~~~~~~~~---------------~~~~~~~~~l~~-~Gv~~~~~~~----------~~~iri~~~~~~t~e  430 (451)
                      +...+ ..|+++|+++.               ....+++++|++ +||.+.|+..          .+++||+  ++.+++
T Consensus       326 ~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis--~~~~~~  403 (418)
T d1w7la_         326 LKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--FVKDEA  403 (418)
T ss_dssp             CEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--CCCCHH
T ss_pred             CcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEE--EcCCHH
Confidence            33333 34777888762               124567888764 6999988621          2678996  456899


Q ss_pred             HHHHHHHHHHHHH
Q 013008          431 ELDQAVEILCKTL  443 (451)
Q Consensus       431 ~i~~~l~~l~~~l  443 (451)
                      ++++++++|++..
T Consensus       404 ~l~~a~~rl~~~~  416 (418)
T d1w7la_         404 TLQAMDEKLRKWK  416 (418)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=5e-24  Score=204.28  Aligned_cols=315  Identities=15%  Similarity=0.129  Sum_probs=190.3

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCC-eEEecCCHHHHHHHHHHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARK  177 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e-~v~~~~sG~eA~~~al~~a~~  177 (451)
                      .++||.|.++   .| .||+|++|+.++...  +...++.++...+++++++++++.+ .++|++||++||..|++.++.
T Consensus         3 ~~~~f~s~n~---~g-~~P~v~~A~~~a~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~   76 (345)
T d1v72a1           3 PALGFSSDNI---AG-ASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTP   76 (345)
T ss_dssp             CCCBCSCGGG---CC-CCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCC
T ss_pred             CCcCcCCCCC---CC-CCHHHHHHHHHHhcc--CccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHh
Confidence            4689987543   44 799999999886532  2333456677889999999999965 688999999999999997663


Q ss_pred             HhhhcCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEE
Q 013008          178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAA  249 (451)
Q Consensus       178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aa  249 (451)
                                 .++.+++.. ..|.+......   .++....     +....  .....+++.+++.+..     ..+.+
T Consensus        77 -----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~  137 (345)
T d1v72a1          77 -----------PWGNIYCHP-ASHINNDECGAPEFFSNGAKL-----MTVDG--PAAKLDIVRLRERTREKVGDVHTTQP  137 (345)
T ss_dssp             -----------TTEEEEECT-TSHHHHSSTTHHHHHTTSCEE-----EECCC--GGGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred             -----------cCCcccccc-ccceeeechhhHHHhcCcccc-----ccccc--ccccccHHHhhhhhcccccccccccc
Confidence                       244444433 33332221111   1111100     00000  0011378999988862     23556


Q ss_pred             EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC--CcceeeecccccCCccccccc
Q 013008          250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLAKPLAGGLPIGAAL  327 (451)
Q Consensus       250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~--~pdi~t~sK~lg~G~~iG~v~  327 (451)
                      ++++.+.++.+....+.++++++.++|++||+++++|++++++++.+..........  .++..+++|..+++...+...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (345)
T d1v72a1         138 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIV  217 (345)
T ss_dssp             EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEE
T ss_pred             eeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccc
Confidence            677776666666678899999999999999999999999987655544333333333  344566777766543333333


Q ss_pred             c-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCccee-cccceeEEEEe
Q 013008          328 V-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDV-RGLGLIIGIEF  392 (451)
Q Consensus       328 ~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v-~g~G~~~~~~~  392 (451)
                      . ...................++. ..++.++...+....+.+.             .+..++.+... +..+.+.++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~-~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~  296 (345)
T d1v72a1         218 LFNTSLATEMSYRRKRAGHLSSKM-RFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRL  296 (345)
T ss_dssp             ESSGGGHHHHHHHHHHTTCCCSST-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEE
T ss_pred             cchhhhhhhccccccccccccchh-hHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEc
Confidence            3 2222222211111111122222 2222333333333222211             23455554433 23455666665


Q ss_pred             cCChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          393 DVSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       393 ~~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                         ..++++.|+++|+.+.+... .+.+||+++..+|+||||+++++|+++
T Consensus       297 ---~~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         297 ---DSAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             ---CHHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             ---CHHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence               35688899999998865432 378999999999999999999999874

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.6e-23  Score=204.42  Aligned_cols=317  Identities=13%  Similarity=0.073  Sum_probs=213.2

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEA  170 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~  170 (451)
                      +.+||+..|..  .+. .++.+++++.+.+++..+.+  ..+..+.++.+++++.+.++    .+ .|++|+|+++|+..
T Consensus        26 ~~~i~l~~G~P--d~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~  102 (382)
T d1u08a_          26 HQAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA  102 (382)
T ss_dssp             TTCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred             CCCEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHH
Confidence            45688888876  233 57889999999887743322  22233447777788777655    44 59999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008          171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV  250 (451)
Q Consensus       171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav  250 (451)
                      +++++.           ++++.|++.+|.|+.+..............    +...+..   ..|++++++.+.++..+.+
T Consensus       103 ~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~---~~d~~~l~~~~~~~~~~i~  164 (382)
T d1u08a_         103 AITALV-----------RNGDEVICFDPSYDSYAPAIALSGGIVKRM----ALQPPHF---RVDWQEFAALLSERTRLVI  164 (382)
T ss_dssp             HHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE----ECCTTTC---CCCHHHHHHHCCTTEEEEE
T ss_pred             HHhhcc-----------cccceEEEecccccchhhhhhhccccceec----ccccccc---cCCHHHHhhhhccCccEEE
Confidence            998766           268999999999988765544433211110    1111111   1378999988876434445


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccc----ccCCCcceeeeccccc-CCcccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHE----HYGIFPDIMTLAKPLA-GGLPIG  324 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~----~~~~~pdi~t~sK~lg-~G~~iG  324 (451)
                      ++.|.|++ | .+.+.+.+++|.++|++++++++.||+|..+...+... ...    ..+...-+.++||.++ .|+|+|
T Consensus       165 l~~P~NPt-G-~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG  242 (382)
T d1u08a_         165 LNTPHNPS-A-TVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVG  242 (382)
T ss_dssp             EESSCTTT-C-CCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCE
T ss_pred             ECCCCccc-c-cccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccch
Confidence            55555444 4 35799999999999999999999999997653333211 110    1112233457899998 699999


Q ss_pred             cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCC--CCcceecc-cceeEEE
Q 013008          325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARN--PHVKDVRG-LGLIIGI  390 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~--~~~~~v~g-~G~~~~~  390 (451)
                      |+++++++++.+.......+++.+.+.+.++.++++.-  +++.+.           +.+.+  ..+..+.+ .|+++|+
T Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~  320 (382)
T d1u08a_         243 YCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLV  320 (382)
T ss_dssp             EEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEE
T ss_pred             hhhccchhHHHHHhhhcccccccccccccccccccccc--hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceEEEEE
Confidence            99999998887755444556778889999988888742  233222           22222  23333444 4677888


Q ss_pred             Eec----CChHHHHHHHH-HCCceeeecCC-------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          391 EFD----VSATPVVDACR-DSGLLVLTAGK-------GNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       391 ~~~----~~~~~~~~~l~-~~Gv~~~~~~~-------~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                      .+.    .+..+|+++|+ +.||.+.|+..       .+++||+.  +.++|+++++++||++
T Consensus       321 ~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~--~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         321 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCF--AKKESTLLAAAERLRQ  381 (382)
T ss_dssp             ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEEC--CSCHHHHHHHHHHHTT
T ss_pred             ecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEE--eCCHHHHHHHHHHHhC
Confidence            773    45678898886 56999998621       24688864  5689999999999875

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.89  E-value=1.5e-22  Score=204.04  Aligned_cols=335  Identities=13%  Similarity=0.096  Sum_probs=199.1

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA  175 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a  175 (451)
                      .|+.+|||.+..++..+++.+   ..+    +.....  .+..++...+|+++++++++.++++|++||++|++.|++++
T Consensus        40 ~~~~~id~~sd~~t~~~~~~~---~a~----~~~gd~--~y~~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~  110 (465)
T d1ax4a_          40 SSAVYIDLLTDSGTNAMSDHQ---WAA----MITGDE--AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL  110 (465)
T ss_dssp             GGGCSEECSCSSSCCCEEHHH---HHH----HHTCCC--CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred             ccCeeeecccccchhhhhHHH---HHH----Hhhhhh--hhccChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHH
Confidence            477899999988765554321   122    222211  12345667899999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh-ccCCCCc------CCCCcCCCCCeeEeeCCCHHHHHHhcC---CC
Q 013008          176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHY------RSPFEPVMPGVNFVEYGNIEATRKLIQ---PG  245 (451)
Q Consensus       176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~d~~~le~~l~---~~  245 (451)
                      +.+....+..    +..++.  +.||+.+..+.. ..+....      ...+.+..+...   ..|+++|+++|+   ++
T Consensus       111 ~~~g~~~~~~----~~~~i~--~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~  181 (465)
T d1ax4a_         111 LKYKQKEGKA----KNPVFI--SNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKG---DFDIKKLKENIAQHGAD  181 (465)
T ss_dssp             HHHHHHTTCC----SSCEEE--ESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTT---CBCHHHHHHHHHHHCGG
T ss_pred             HHHHHhcCCC----CCeEEe--ccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccC---ccCHHHHHHHHHhhccc
Confidence            9887554432    333443  356766554433 2221110      000111000000   028899999986   44


Q ss_pred             CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC------CCcccccccccccCCC------cceeee
Q 013008          246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG------LGRTGYLWAHEHYGIF------PDIMTL  313 (451)
Q Consensus       246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg------~gr~G~~~~~~~~~~~------pdi~t~  313 (451)
                      .++++++++.++++|+.+++.++|++|+++|++||++||+||+++.      .++.+..+.....++.      .|++++
T Consensus       182 ~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~  261 (465)
T d1ax4a_         182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTM  261 (465)
T ss_dssp             GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEE
T ss_pred             cccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEe
Confidence            6889999999999999999999999999999999999999999862      2233333333222222      467888


Q ss_pred             cccccCC-cccccccccH--HHHhhcc----CCCccCCCCCc-HHHHHHHHHHHHHhcChHHHHH-----------HHh-
Q 013008          314 AKPLAGG-LPIGAALVTE--KVASAIN----YGDHGSTFAGS-PLVCNAAIAVLDKISNPAFLAS-----------KLA-  373 (451)
Q Consensus       314 sK~lg~G-~~iG~v~~~~--~i~~~~~----~~~~~~t~~~~-~~~~aaa~aal~~~~~~~~~~~-----------~~~-  373 (451)
                      ||..+++ ...|+++.++  .+.....    ......++++. ....+++...+.....+++.++           +.+ 
T Consensus       262 s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~  341 (465)
T d1ax4a_         262 SAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA  341 (465)
T ss_dssp             ETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            8888765 5556666653  2222221    11233344433 3333333333443334444333           222 


Q ss_pred             CCCCcceecccceeEEEEe--c-C-----ChHH-HHHHHHHCCceeeecC----------------CCCEEEEe-CCCCC
Q 013008          374 RNPHVKDVRGLGLIIGIEF--D-V-----SATP-VVDACRDSGLLVLTAG----------------KGNVVRLV-PPLII  427 (451)
Q Consensus       374 ~~~~~~~v~g~G~~~~~~~--~-~-----~~~~-~~~~l~~~Gv~~~~~~----------------~~~~iri~-~~~~~  427 (451)
                      ..+.+....+.+.+.....  . .     .... ..+.+.+.||.....+                ..+.+||+ |+.++
T Consensus       342 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~  421 (465)
T d1ax4a_         342 GIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVY  421 (465)
T ss_dssp             TCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSS
T ss_pred             cCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCC
Confidence            2333333223232222111  1 1     1222 3344556787654221                12579997 45788


Q ss_pred             CHHHHHHHHHHHHHHHHHHhh
Q 013008          428 SEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       428 t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      |+||+|+++++|++++++.++
T Consensus       422 T~eeiD~vv~~l~~v~~~~~~  442 (465)
T d1ax4a_         422 TNDHMDYIADALIGLKEKFAT  442 (465)
T ss_dssp             CHHHHHHHHHHHHTTHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999887653

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2.2e-22  Score=194.04  Aligned_cols=298  Identities=17%  Similarity=0.159  Sum_probs=186.7

Q ss_pred             ecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-----CCCeEEecCCHHHHH
Q 013008           94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-----FADRVFFSNTGTEAN  168 (451)
Q Consensus        94 d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~e~v~~~~sG~eA~  168 (451)
                      ...+++.|++..|-.  +++ .++.+++++.+++.....  .+++.....+|.+.+++++     ..++|++|+|+++|+
T Consensus        15 ~~~~~d~~~l~~~en--p~~-~p~~i~~~~~~~~~~~~~--~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l   89 (334)
T d2f8ja1          15 ETEKRDKTYLALNEN--PFP-FPEDLVDEVFRRLNSDAL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEII   89 (334)
T ss_dssp             CCCCCCSEECSSCCC--SSC-CCHHHHHHHHHHCCTTGG--GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHH
T ss_pred             cccCCCceEEECCCC--CCC-CCHHHHHHHHHHhhcchh--cCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHH
Confidence            346788888776643  465 578999999988865322  1122222334555555543     378899999999988


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++               .+|+|++++|+|.++.......+.... .   .+...+...         .+...+....
T Consensus        90 ~~l~~---------------~~d~v~i~~P~y~~~~~~~~~~g~~~v-~---v~~~~~~~~---------~~~~~~~~~~  141 (334)
T d2f8ja1          90 YVMML---------------MFDRSVFFPPTYSCYRIFAKAVGAKFL-E---VPLTKDLRI---------PEVNVGEGDV  141 (334)
T ss_dssp             HHHHH---------------HSSEEEECSSCCHHHHHHHHHHTCCEE-E---CCCCTTSCC---------CCCCCCTTEE
T ss_pred             HHHhh---------------hccccccccccccccccchhccCCccc-c---ccccccccc---------cccccccceE
Confidence            77654               267899999999887655444332221 1   111111110         0112233344


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCccccccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAAL  327 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~  327 (451)
                      +++++|.++. |. +.+.+.+.   ++ .++++++|+||++.++............+...-+.+|||.++ .|+|+||++
T Consensus       142 l~l~nP~NPt-G~-~~s~~~l~---~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~  215 (334)
T d2f8ja1         142 VFIPNPNNPT-GH-VFEREEIE---RI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVV  215 (334)
T ss_dssp             EEEESSCTTT-CC-CCCHHHHH---HH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEE
T ss_pred             EEeccccccc-ce-eecHHHhh---cc-ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcc
Confidence            5556665544 44 34555443   43 568999999999876533322222222222222448999998 699999999


Q ss_pred             ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec
Q 013008          328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD  393 (451)
Q Consensus       328 ~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~  393 (451)
                      +++++++.+...  ..+++.+..++.++.+.++.   .++.++              .+++++ +...++.|.++++.+.
T Consensus       216 ~~~~~i~~l~~~--~~~~~~s~~~~~~a~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~g~f~~~~~~  289 (334)
T d2f8ja1         216 ASEKFIDAYNRV--RLPFNVSYVSQMFAKVALDH---REIFEERTKFIVEERERMKSALREMG-YRITDSRGNFVFVFME  289 (334)
T ss_dssp             ECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCCCSSEEEEECC
T ss_pred             cchHHHHHHHHh--hcccccchhhhhhccccccc---ccchhhHHHHHHHHHHHHHHHHHHCC-CeECCCCceEEEEECC
Confidence            999999988643  23456678888888777763   222222              223332 3345667888887773


Q ss_pred             -CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          394 -VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       394 -~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                       .+..++++.|+++||++.+..  +++|+++.   +.||+++++++|++
T Consensus       290 ~~~~~~~~~~L~~~GI~vr~~~--~~vRis~g---~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         290 KEEKERLLEHLRTKNVAVRSFR--EGVRITIG---KREENDMILRELEV  333 (334)
T ss_dssp             HHHHHHHHHHHHHTTEECEEET--TEEEEECC---CHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCEECCCC--CeEEEEcC---CHHHHHHHHHHHhc
Confidence             356789999999999997753  78999753   78888888888765

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.88  E-value=1.6e-21  Score=194.44  Aligned_cols=285  Identities=15%  Similarity=0.090  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHhhccC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          140 IPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~------~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +.+.++++++.+.++      .++|++|+|+++|+..++++..           .++|.|++.+|+|+++........+.
T Consensus        87 ~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~-----------~~Gd~Vlv~~P~y~~~~~~~~~~~g~  155 (428)
T d1iaya_          87 EFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-----------DPGDAFLVPSPYYPAFNRDLRWRTGV  155 (428)
T ss_dssp             HHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-----------CTTCEEEEESSCCTTHHHHTTTTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC-----------CCCCEEEEccCCchHHHHHHHHhcCC
Confidence            447777777776653      6799999999999999998654           27899999999998875433222222


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecc
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV  288 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv  288 (451)
                      ........+ ..+..    -|.++++.+++     ..++.++++...++++| .+.+.+.+++|.++|++||++||+||+
T Consensus       156 ~~v~v~~~~-~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG-~~~s~~~~~~i~~~a~~~~~~vI~De~  229 (428)
T d1iaya_         156 QLIPIHCES-SNNFK----ITSKAVKEAYENAQKSNIKVKGLILTNPSNPLG-TTLDKDTLKSVLSFTNQHNIHLVCDEI  229 (428)
T ss_dssp             EEEEECCCT-TTTTC----CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHTTTCEEEEECT
T ss_pred             eEEEeeccc-ccccc----cccccccchhhhhhccCCCceEEEEccCCCccc-ccccccccchhheeeccCcEEEEeccc
Confidence            111100000 00111    15666655442     33455554443344445 467999999999999999999999999


Q ss_pred             ccCCCccccccc-c-cccC------CCc----ceeeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHH
Q 013008          289 QCGLGRTGYLWA-H-EHYG------IFP----DIMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNA  354 (451)
Q Consensus       289 ~tg~gr~G~~~~-~-~~~~------~~p----di~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aa  354 (451)
                      |..+.+.+..+. . +..+      ..+    -+.+|||.++ +|+|+||+++ ++.+.+.+.....  ....+...+.+
T Consensus       230 Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~  307 (428)
T d1iaya_         230 YAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS--FGLVSTQTQYF  307 (428)
T ss_dssp             TGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHT--TSCCCHHHHHH
T ss_pred             ccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhc--ccccccccccc
Confidence            988755443211 1 1111      111    2447899998 5899999987 5667666542211  11233344333


Q ss_pred             HHHHHHHhc-ChHHHHH--------------HHhCCCCccee-cccceeEEEEecC--------ChHHHHHHHHH-CCce
Q 013008          355 AIAVLDKIS-NPAFLAS--------------KLARNPHVKDV-RGLGLIIGIEFDV--------SATPVVDACRD-SGLL  409 (451)
Q Consensus       355 a~aal~~~~-~~~~~~~--------------~~~~~~~~~~v-~g~G~~~~~~~~~--------~~~~~~~~l~~-~Gv~  409 (451)
                      +.+.+..-. -+++.++              .++.. .+... ...|+++|+++..        ...++++.|++ .||+
T Consensus       308 ~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~  386 (428)
T d1iaya_         308 LAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLN  386 (428)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEE
T ss_pred             hhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEE
Confidence            333221000 0111111              22222 23223 3347888888831        23467888886 5999


Q ss_pred             eeecC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          410 VLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       410 ~~~~~-----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      +.|+.     .++++|+++. ..++++|+++++||++++..
T Consensus       387 v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         387 VSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             CEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             EEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence            99862     1478999653 45778899999999999864

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.88  E-value=7e-22  Score=197.19  Aligned_cols=286  Identities=17%  Similarity=0.120  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHhhccC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          140 IPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       140 ~~~~~l~~~l~~~~~------~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      +.+.++++++.++++      +++|++|+|+++|+..+++++.           +++|.|++.+|+|+++........+.
T Consensus        88 ~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~-----------~pGd~Vlv~~P~y~~~~~~~~~~~g~  156 (431)
T d1m7ya_          88 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-----------DPGEAVLIPTPYYPGFDRDLKWRTGV  156 (431)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-----------CTTCEEEEEESCCTTHHHHTTTTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHhcCc
Confidence            446677777776643      6799999999999999999665           26899999999998775443222222


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcC-----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecc
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV  288 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv  288 (451)
                      ....   .+......+  .-|.+.+++.+.     ..++.++++...++++| .+.+.+.+++|.++|++||+++|+||+
T Consensus       157 ~~v~---v~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG-~~~s~~~l~~i~~~a~~~~~~vI~De~  230 (431)
T d1m7ya_         157 EIVP---IHCTSSNGF--QITETALEEAYQEAEKRNLRVKGVLVTNPSNPLG-TTMTRNELYLLLSFVEDKGIHLISDEI  230 (431)
T ss_dssp             EEEE---EECCGGGTS--CCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             eecc---ccccchhcc--cccHHHhhhhhhhhhhccCcceEEEecCcccccc-ccccccccccccccccccCcceeeccc
Confidence            1110   011110000  016777776664     23455555444444445 467999999999999999999999999


Q ss_pred             ccCCCccccccc-ccc----cCC---------Ccceeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHH
Q 013008          289 QCGLGRTGYLWA-HEH----YGI---------FPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCN  353 (451)
Q Consensus       289 ~tg~gr~G~~~~-~~~----~~~---------~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~a  353 (451)
                      |..+-+.+..+. ...    ...         ..-+.++||.++ +|+|+||++++++++....... ......++..+.
T Consensus       231 Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~-~~~~~~~~~~~~  309 (431)
T d1m7ya_         231 YSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSFGLVSSQTQH  309 (431)
T ss_dssp             TGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHH-GGGSCCCHHHHH
T ss_pred             ccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHH-hccccccccccc
Confidence            987654443211 100    000         111337899998 6899999999877654332111 122233444444


Q ss_pred             HHHHHHHHhc-ChHHHHH--------------HHhCCCCcceeccc-ceeEEEEecC--------ChHHHHHHHHH-CCc
Q 013008          354 AAIAVLDKIS-NPAFLAS--------------KLARNPHVKDVRGL-GLIIGIEFDV--------SATPVVDACRD-SGL  408 (451)
Q Consensus       354 aa~aal~~~~-~~~~~~~--------------~~~~~~~~~~v~g~-G~~~~~~~~~--------~~~~~~~~l~~-~Gv  408 (451)
                      ++.+.+.... .+++.++              .++. +.+..+++. |+++|+++..        ...+++++|++ .||
T Consensus       310 ~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV  388 (431)
T d1m7ya_         310 LLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHL  388 (431)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCE
T ss_pred             hhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc-CCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCE
Confidence            4444332110 0112211              2222 234444443 7888888731        23467888875 599


Q ss_pred             eeeecC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          409 LVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       409 ~~~~~~-----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ++.|+.     .++++|++.. ..++++++++++||++++++
T Consensus       389 ~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         389 NISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             ECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHH
Confidence            999863     1468999653 35788999999999999976

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.6e-21  Score=187.98  Aligned_cols=273  Identities=17%  Similarity=0.217  Sum_probs=180.0

Q ss_pred             CCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc-eEEEEcCCccCChhhhhhccCC
Q 013008          137 YYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT-EFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       137 ~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~-~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      |+.....+|.++|+++++  +|+|++|+|+++|+..++++..           .++| .|++.+|+|..+.......+..
T Consensus        53 YPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~-----------~pgd~~Vl~~~P~y~~~~~~~~~~g~~  121 (354)
T d1fg7a_          53 YPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC-----------EPGKDAILYCPPTYGMYSVSAETIGVE  121 (354)
T ss_dssp             CCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC-----------CTTTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred             CCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh-----------ccccccccccccccccchhhhhccCce
Confidence            444335688889998887  7899999999999999999665           2566 5788899998776554443322


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                      .. .   .+...+...    |+++++..+.  ++++|++.+.++++|. +.+++.++.+.+.|+ ++.++|+||.+..|.
T Consensus       122 v~-~---~~~~~~~~~----d~~~l~~~~~--~~~~v~~~~pnNPtG~-~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~  189 (354)
T d1fg7a_         122 CR-T---VPTLDNWQL----DLQGISDKLD--GVKVVYVCSPNNPTGQ-LINPQDFRTLLELTR-GKAIVVADEAYIEFC  189 (354)
T ss_dssp             EE-E---CCCCTTSCC----CHHHHHTSCT--TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHT-TTCEEEEECTTGGGS
T ss_pred             ee-c---ccccccccc----chhhhhhccc--ccceeeccCCCcccee-Eeeeccccccccccc-ccccccccccchhhc
Confidence            11 1   122222221    7889988764  5667777776666665 468888888888776 567778888876664


Q ss_pred             cccccccccccCCCcc---eeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcCh----
Q 013008          294 RTGYLWAHEHYGIFPD---IMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP----  365 (451)
Q Consensus       294 r~G~~~~~~~~~~~pd---i~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~----  365 (451)
                      .....  .......+.   +-+|||.++ +|+|+||+++++++++.+...  ...++.+.+++.++.+++..-...    
T Consensus       190 ~~~~~--~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~  265 (354)
T d1fg7a_         190 PQASL--AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKV--IAPYPLSTPVADIAAQALSPQGIVAMRE  265 (354)
T ss_dssp             GGGCS--GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHH--SCSSCSCHHHHHHHHHHTSHHHHHHHHH
T ss_pred             ccccc--chhhcccccceEEeCCccccCCCccccccccccchhhhhhhhh--cCccchhhHHHHHHHHHHhhhccccccc
Confidence            32221  111222233   338999998 799999999999999887543  234555555555554443211000    


Q ss_pred             ---HHHHH------HHhCCCCcce-ecccceeEEEEecCChHHHHHHHHHCCceeeecCC----CCEEEEeCCCCCCHHH
Q 013008          366 ---AFLAS------KLARNPHVKD-VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----GNVVRLVPPLIISEQE  431 (451)
Q Consensus       366 ---~~~~~------~~~~~~~~~~-v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~iri~~~~~~t~e~  431 (451)
                         .+.++      .+..++.+.. .++.|.|+++.+. ++.++++.|+++||++.+++.    .+++|+++   .++|+
T Consensus       266 ~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~-~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisi---gt~ee  341 (354)
T d1fg7a_         266 RVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITV---GTREE  341 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-THHHHHHHHHHTTEECEECTTSTTCTTEEEEEC---CCHHH
T ss_pred             cchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC-CHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEe---CCHHH
Confidence               01111      2234554433 3556788888885 577899999999999987642    47899974   37888


Q ss_pred             HHHHHHHHH
Q 013008          432 LDQAVEILC  440 (451)
Q Consensus       432 i~~~l~~l~  440 (451)
                      +++++++|+
T Consensus       342 ~~~~l~aLk  350 (354)
T d1fg7a_         342 SQRVIDALR  350 (354)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888888775

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.5e-22  Score=201.44  Aligned_cols=338  Identities=12%  Similarity=0.093  Sum_probs=199.3

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR  176 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~  176 (451)
                      ++.+||+.+.+++....       +++...+.....  .+..++...+|+++++++++.+.+++++||++|++.|+++++
T Consensus        40 ~~~~idl~sd~~t~~~~-------~~~~a~~~~gd~--~Y~~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~  110 (467)
T d2v1pa1          40 EDVFIDLLTDSGTGAVT-------QSMQAAMMRGDE--AFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLI  110 (467)
T ss_dssp             GGCSEECSCCTTCSCCC-------HHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHH
T ss_pred             cceeeeccccccchhhH-------HHHHhhccccch--hhcCCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHh
Confidence            45688988877643221       222222222111  123456688999999999999999999999999999999998


Q ss_pred             HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcC---CCCcCCCCCeeEeeCCCHHHHHHhcC---CCCeEEE
Q 013008          177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR---SPFEPVMPGVNFVEYGNIEATRKLIQ---PGKTAAV  250 (451)
Q Consensus       177 ~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~aav  250 (451)
                      .+.......   ++...+.....||+.+......+|.....   ................|+++|++.++   +..+++|
T Consensus       111 ~~g~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i  187 (467)
T d2v1pa1         111 KKREQEKGL---DRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI  187 (467)
T ss_dssp             HHHHHHHCC---CTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCE
T ss_pred             hccceEecC---CCCcEEEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCcccccee
Confidence            765432221   34556778888998887777766532110   00000001111122348999999986   3468899


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC---Cccccccccccc---------CCCcceeeeccccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL---GRTGYLWAHEHY---------GIFPDIMTLAKPLA  318 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~---gr~G~~~~~~~~---------~~~pdi~t~sK~lg  318 (451)
                      ++|++++++|..+++.++|++|+++|++||++||+|+++..-   +..+....+...         .-..|++++|+..+
T Consensus       188 ~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~  267 (467)
T d2v1pa1         188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD  267 (467)
T ss_dssp             EEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSST
T ss_pred             eecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCC
Confidence            999999999888999999999999999999999999998521   111111111111         12468888877665


Q ss_pred             CCccccc-ccccHH-HHhhcc-------CCCccCCCCCcHHH-HHHHHHHHHHhcChHHHHH-----------HHhCCCC
Q 013008          319 GGLPIGA-ALVTEK-VASAIN-------YGDHGSTFAGSPLV-CNAAIAVLDKISNPAFLAS-----------KLARNPH  377 (451)
Q Consensus       319 ~G~~iG~-v~~~~~-i~~~~~-------~~~~~~t~~~~~~~-~aaa~aal~~~~~~~~~~~-----------~~~~~~~  377 (451)
                      ++.+.|. ++.+++ +.....       ......++++.+.. +++....+.....+++.++           +.+....
T Consensus       268 ~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  347 (467)
T d2v1pa1         268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVV  347 (467)
T ss_dssp             TCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            4434444 444433 322221       11233444444444 3444444555455555544           2222112


Q ss_pred             cceecccceeEEEEe----c------CChHHHH-HHHHHCCceeeecC----------------CCCEEEEeCC-CCCCH
Q 013008          378 VKDVRGLGLIIGIEF----D------VSATPVV-DACRDSGLLVLTAG----------------KGNVVRLVPP-LIISE  429 (451)
Q Consensus       378 ~~~v~g~G~~~~~~~----~------~~~~~~~-~~l~~~Gv~~~~~~----------------~~~~iri~~~-~~~t~  429 (451)
                      +....+  ....++.    .      .....+. +.+.+.||.....+                ..+.+|+++| ..+|+
T Consensus       348 v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~  425 (467)
T d2v1pa1         348 CQQAGG--HAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQ  425 (467)
T ss_dssp             EEEECS--SCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCH
T ss_pred             ccCCCc--cceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCH
Confidence            222222  2222221    0      1122333 33456676432110                1257999865 57899


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 013008          430 QELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       430 e~i~~~l~~l~~~l~~~~~  448 (451)
                      ||||+++++|++++++.++
T Consensus       426 eeiD~vv~~l~~v~~~~~~  444 (467)
T d2v1pa1         426 THMDFIIEAFKHVKENAAN  444 (467)
T ss_dssp             HHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999876543

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.85  E-value=2.6e-20  Score=182.46  Aligned_cols=311  Identities=14%  Similarity=0.146  Sum_probs=199.1

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC------CCHHHHHHHHHHhhccC--CCeEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY------YSIPQIELAKRLVACSF--ADRVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA  167 (451)
                      +.+-|+|..+      .|..+..|.+|+.+.++.........      ......++.+.|+++++  .++|+|++|+++|
T Consensus         6 ~~~~yld~~~------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a   79 (381)
T d1elua_           6 ANKTYFNFGG------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG   79 (381)
T ss_dssp             TTSEECCTTT------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred             CCCEEeeCCc------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence            4567888554      66678889999998876532211111      11124456777888887  6789999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC------C-CHHHHHH
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY------G-NIEATRK  240 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-d~~~le~  240 (451)
                      +..++..+..          ++++.|++.+..|+........+.....         ..+..+|.      . +.+.+++
T Consensus        80 ~~~~~~~l~~----------~~g~~i~~~~~~~~s~~~~~~~~~~~~g---------~~~~~v~~~~~~~~~~~~~~l~~  140 (381)
T d1elua_          80 CDIVLWGLDW----------HQGDEILLTDCEHPGIIAIVQAIAARFG---------ITYRFFPVAATLNQGDAAAVLAN  140 (381)
T ss_dssp             HHHHHHHSCC----------CTTCEEEEETTCCHHHHHHHHHHHHHHC---------CEEEEECCGGGSSSSCHHHHHHT
T ss_pred             hhhcchhhhh----------cCCceEEEeccccceeeecccccccccc---------ccccccccccccccchHHHHHHh
Confidence            9998875421          2588899998888654332211110000         01112221      1 2566777


Q ss_pred             hcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHh----CCEEEEeccccCCCcccccccccccCCCcceeeec--
Q 013008          241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA----GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--  314 (451)
Q Consensus       241 ~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~----g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--  314 (451)
                      .+.+ ++++|++..+++++|.+.+    +++|.++|++|    ++++++|.+|+ +|..    ..+.....+|++++|  
T Consensus       141 ~i~~-~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~----~~~~~~~~~D~~~~s~~  210 (381)
T d1elua_         141 HLGP-KTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL----PLDFSRLEVDYYAFTGH  210 (381)
T ss_dssp             TCCT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB----CCCTTTSCCSEEEEESS
T ss_pred             hhcc-cccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc----ccccccccccccccccc
Confidence            7654 7888888888888888888    89999999985    69999999985 4322    122223457777655  


Q ss_pred             ccccCCcccccccccHHHHhhccCCCcc----------------------CCCCCcHHHHHHHHHHHHHhcC---h-HHH
Q 013008          315 KPLAGGLPIGAALVTEKVASAINYGDHG----------------------STFAGSPLVCNAAIAVLDKISN---P-AFL  368 (451)
Q Consensus       315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~----------------------~t~~~~~~~~aaa~aal~~~~~---~-~~~  368 (451)
                      |.+++..++|++..++++.+.+.+...+                      ...+.+.....+..++++.+..   . ...
T Consensus       211 K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~  290 (381)
T d1elua_         211 KWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERY  290 (381)
T ss_dssp             STTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             ccccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccch
Confidence            9998766778888888877766532110                      0012334444555555554322   1 111


Q ss_pred             HH----------HHhCCCCccee---cccceeEEEEec--CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHH
Q 013008          369 AS----------KLARNPHVKDV---RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD  433 (451)
Q Consensus       369 ~~----------~~~~~~~~~~v---~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~  433 (451)
                      ++          .++.+|.+..+   ...+.++.|.++  .....+.+.|.++||.+...+.++.+|+++...+|+||||
T Consensus       291 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid  370 (381)
T d1elua_         291 QAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEIN  370 (381)
T ss_dssp             HHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHH
T ss_pred             hhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHH
Confidence            21          22344533222   234567777663  3457788999999999877665688999999989999999


Q ss_pred             HHHHHHHH
Q 013008          434 QAVEILCK  441 (451)
Q Consensus       434 ~~l~~l~~  441 (451)
                      +++++|++
T Consensus       371 ~ll~~l~e  378 (381)
T d1elua_         371 HLLARLAD  378 (381)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99999875

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.82  E-value=1.8e-19  Score=178.41  Aligned_cols=328  Identities=12%  Similarity=0.020  Sum_probs=182.2

Q ss_pred             EeeccCcccccCCC--CCHHHHHHHHHHHhhc--cccc--CCCCCHHHHHHHHHHhhccC----CC--eEEecCCHHHHH
Q 013008          101 LDLSSGIAVNALGH--GDADWIKAVVDQANVL--THVS--NMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTEAN  168 (451)
Q Consensus       101 iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~--~~~~~~~~~~l~~~l~~~~~----~e--~v~~~~sG~eA~  168 (451)
                      ||+.-|.+...-|.  ..|.|.+|....+.+.  .+.+  ..+..+.++++++++.+..+    .+  .+..+.+++.++
T Consensus        33 Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (412)
T d1ajsa_          33 VNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGAL  112 (412)
T ss_dssp             EECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred             EEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHH
Confidence            56666543333343  3477888766544332  2211  11122224455555544433    33  355677888888


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCC
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGK  246 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~  246 (451)
                      ..+..++........    +++|.|++++|+|.++.......++.......+..  .+...   .|++.+++.+.  .++
T Consensus       113 ~~~~~~l~~~~~~~~----~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~--~~~~~---~d~~~~~~~~~~~~~~  183 (412)
T d1ajsa_         113 RIGAEFLARWYNGTN----NKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD--TEKRG---LDLQGFLSDLENAPEF  183 (412)
T ss_dssp             HHHHHHHHHHSSSSS----CCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE--TTTTE---ECHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHhhhcC----CCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccc--ccccc---ccHHHHHHHHHhccCC
Confidence            888876654322111    26999999999998776554444332211100000  00000   16666665543  334


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc---ccc-cccC---CCcceeeecccccC
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---WAH-EHYG---IFPDIMTLAKPLAG  319 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~---~~~-~~~~---~~pdi~t~sK~lg~  319 (451)
                      ..++++.+.++++| .+++++.+++|.++|++||+++|+||+|.++.+.+..   +.. ....   ...-+.++||.++.
T Consensus       184 ~~~il~~~P~NPTG-~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~  262 (412)
T d1ajsa_         184 SIFVLHACAHNPTG-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGL  262 (412)
T ss_dssp             CEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCC
T ss_pred             cEEEEecCCCCCcC-CCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccC
Confidence            55555554444555 4689999999999999999999999999988655531   111 1111   12223478899985


Q ss_pred             -CcccccccccHHHHhhccC-------CCccCCCCCcHHHHHHHHHHHHHhc-Ch-----------HHHHH------HHh
Q 013008          320 -GLPIGAALVTEKVASAINY-------GDHGSTFAGSPLVCNAAIAVLDKIS-NP-----------AFLAS------KLA  373 (451)
Q Consensus       320 -G~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~~~~~aaa~aal~~~~-~~-----------~~~~~------~~~  373 (451)
                       |+|+||++++.+..+.+..       .......+.+.++++++.+.+.... ..           .+.++      .++
T Consensus       263 ~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~  342 (412)
T d1ajsa_         263 YNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLE  342 (412)
T ss_dssp             GGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             8999999887543332211       1112233445566655555443110 00           01110      122


Q ss_pred             CCC---Ccce-ecccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          374 RNP---HVKD-VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       374 ~~~---~~~~-v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+.   .... ....|+|.++.+   ..+++++|+ ++||++.|++     ||+++ ..++++|+.++++|++++++++
T Consensus       343 ~~~~~~~~~~i~~~~G~F~~~~l---s~~~v~~L~~e~gV~~vpg~-----Ri~~a-g~~~~~i~~~a~aI~~av~~~~  412 (412)
T d1ajsa_         343 ALKTPGTWNHITDQIGMFSFTGL---NPKQVEYLINQKHIYLLPSG-----RINMC-GLTTKNLDYVATSIHEAVTKIQ  412 (412)
T ss_dssp             HTTCSSCCHHHHHCCSSEEECCC---CHHHHHHHHHTTCEECCTTS-----EEEGG-GCCTTTHHHHHHHHHHHHHHCC
T ss_pred             HhCCCCCeeeecCCCeEEEecCC---CHHHHHHHHHhCCEEEeCCC-----eEEec-cCCHHHHHHHHHHHHHHHHhcC
Confidence            221   1111 234566665443   234556665 5799998863     77644 3578899999999999998764

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.82  E-value=1.5e-20  Score=183.30  Aligned_cols=187  Identities=12%  Similarity=0.075  Sum_probs=127.8

Q ss_pred             HHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC-CccCChhhhhhccCCCCcC
Q 013008          142 QIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN-SFHGRTMGALALTSKEHYR  217 (451)
Q Consensus       142 ~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~-~yhg~~~~~~~~~~~~~~~  217 (451)
                      ..++.+...+.++   .+.+++++||++|+..++.++.            +++.+++..+ ..|.....++.+.+     
T Consensus        52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~------------~~~~vi~~~~~~~~~~~~~~~~l~g-----  114 (366)
T d2aeua1          52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK------------PKKVIHYLPELPGHPSIERSCKIVN-----  114 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC------------CSEEEEECSSSSCCTHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC------------CCCEEEEecCCCcchhHHHHHHhcC-----
Confidence            4566666555554   6789999999999999997644            5677666532 34555555444432     


Q ss_pred             CCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc--
Q 013008          218 SPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT--  295 (451)
Q Consensus       218 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~--  295 (451)
                               ..+++++|+++|++.+.+ ++++|+++...++.+   .+.+.|++|+++|++||+++|+||+|....+.  
T Consensus       115 ---------~~~v~~~d~e~l~~~i~~-~tk~i~~~~p~n~~~---~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~  181 (366)
T d2aeua1         115 ---------AKYFESDKVGEILNKIDK-DTLVIITGSTMDLKV---IELENFKKVINTAKNKEAIVFVDDASGARVRLLF  181 (366)
T ss_dssp             ---------CEEEEESCHHHHHTTCCT-TEEEEEECBCTTSCB---CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT
T ss_pred             ---------CeEECCCCHHHHHHhcCC-CceEEEEEecCCCCc---CCHHHHHHHHHHhccCcEEEEEecCccccccccc
Confidence                     234566799999999976 567777765433332   35556999999999999999999998532111  


Q ss_pred             cccccccccCCCcceeee--cccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008          296 GYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       296 G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                      +.. .....+  .|++++  +|+++ |+++||+++++++++.+.......+++.+|+.+.++.++|+.+
T Consensus       182 ~~~-~~~~~~--~di~~~S~sK~~~-g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl  246 (366)
T d2aeua1         182 NQP-PALKLG--ADLVVTSTDKLME-GPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNF  246 (366)
T ss_dssp             TCC-CHHHHT--CSEEEEETTSSSS-SCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHC
T ss_pred             cCC-CHhhcC--ceEEEeccccccc-ccceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhc
Confidence            111 111233  566655  45554 6899999999999998865444455667888888888888754

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.82  E-value=1.1e-18  Score=169.21  Aligned_cols=302  Identities=13%  Similarity=0.101  Sum_probs=175.4

Q ss_pred             CCCCHHHHHHHHHHHhhcccc---cCC----C-CCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 013008          113 GHGDADWIKAVVDQANVLTHV---SNM----Y-YSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       113 G~~~p~v~~a~~~~~~~~~~~---~~~----~-~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      |.-+|+.++|+.+..+.+...   ...    . ..+.+..++++++++++.|.+++|+||++|+..+++++.        
T Consensus        12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~--------   83 (364)
T d2e7ja1          12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLA--------   83 (364)
T ss_dssp             CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHC--------
T ss_pred             CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHh--------
Confidence            345678888877643221110   000    0 112467789999999999999999999999999998664        


Q ss_pred             CCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCeeEeeCCCHHHHHHhcC----CCCeEEEEEccccCC
Q 013008          185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQ----PGKTAAVFVEPIQGE  258 (451)
Q Consensus       185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~----~~~~aavi~ep~~~~  258 (451)
                         +++|.||+.+++|+..... ....|.....   .|..  .+..    -|+++++++++    ...+++|+++.++++
T Consensus        84 ---~~gd~Vi~~~~~h~s~~~~-~~~~g~~v~~---v~~~~~~~~~----i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~  152 (364)
T d2e7ja1          84 ---KKDAWVVMDENCHYSSYVA-AERAGLNIAL---VPKTDYPDYA----ITPENFAQTIEETKKRGEVVLALITYPDGN  152 (364)
T ss_dssp             ---CTTCEEEEETTCCHHHHHH-HHHTTCEEEE---ECCCCTTTCC----CCHHHHHHHHHHHTTTSCEEEEEEESSCTT
T ss_pred             ---CCCcEEEeecccccccchH-HHhccceEEE---eeeccccccc----cCHHHHHhhhhhhcccCCceEEEeecCCCC
Confidence               2689999988887554333 2222221111   1110  0111    16889988885    345678888888888


Q ss_pred             CCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccCCcccccccccHHHHhhc
Q 013008          259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVTEKVASAI  336 (451)
Q Consensus       259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~~~i~~~~  336 (451)
                      .|.+.+    +++|.++|++||+++|+||+|+ +|..+.  ....++  .|++++  +|.++++-++|++++++++++.+
T Consensus       153 tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~~--~~~~~g--~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~  223 (364)
T d2e7ja1         153 YGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMPV--SLKEIG--ADFIVGSGHKSMAASGPIGVMGMKEEWAEIV  223 (364)
T ss_dssp             TCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBCC--CHHHHT--CSEEEEEHHHHSSCCSSCEEEEECTTTTTTT
T ss_pred             Cceeec----chhheeccccccchhhccccch-hhhhhh--cccccc--cceeeeccccccCCCCCEEEEEECHHHHHHH
Confidence            888777    9999999999999999999995 443322  122233  566655  49998644789999998877765


Q ss_pred             cCCCc----------cCCCCCcHHHHHHHHHHHHHhcC--hHHH---HH---H---HhCCCCcc-eecccce-eEEEEec
Q 013008          337 NYGDH----------GSTFAGSPLVCNAAIAVLDKISN--PAFL---AS---K---LARNPHVK-DVRGLGL-IIGIEFD  393 (451)
Q Consensus       337 ~~~~~----------~~t~~~~~~~~aaa~aal~~~~~--~~~~---~~---~---~~~~~~~~-~v~g~G~-~~~~~~~  393 (451)
                      .....          ..+..+  ....+..++++.+.+  +.+.   ++   +   +++.+... ....... ...+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  301 (364)
T d2e7ja1         224 LRRSEKYKNKEVELLGCTARG--ATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE  301 (364)
T ss_dssp             TCBCSSCTTSBGGGTTCCCCS--HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH
T ss_pred             HhhccccCcccccccccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCCCCcceEEEecc
Confidence            32110          111111  222233333332211  1111   11   1   12222110 0111111 1122211


Q ss_pred             ----------CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          394 ----------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       394 ----------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                                .....+...+...|+.....+.....|+. .+.+|+|+|++++++|++++++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~-~~~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         302 VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhhccchHHHHHHHhcCCceecCCCcceEEEe-ccCCCHHHHHHHHHHHHHHHHH
Confidence                      11223445566777765444443556665 5678999999999999999876

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.1e-20  Score=182.21  Aligned_cols=319  Identities=12%  Similarity=0.048  Sum_probs=183.5

Q ss_pred             EeeccCcccccCCCC--CHHHHHHHHHHHhhcc--c--ccCCCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHH
Q 013008          101 LDLSSGIAVNALGHG--DADWIKAVVDQANVLT--H--VSNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA  170 (451)
Q Consensus       101 iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~--~--~~~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~  170 (451)
                      ||+..|.+...-|..  .|.|++|.........  +  .+..+..+.++++++++.+..+    .++++.+.+++.+...
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~  108 (397)
T d3tata_          29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL  108 (397)
T ss_dssp             EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred             EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence            788877655556653  3677777654433211  1  1111222335556655555544    6778887776666555


Q ss_pred             HHHHHH-HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCCe
Q 013008          171 AIKFAR-KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKT  247 (451)
Q Consensus       171 al~~a~-~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~  247 (451)
                      ++.++. ...        .++|.|++.+|+|.++.......++... ..   |...+...  ..|.+++.+.+.  ..+.
T Consensus       109 ~l~~~~~~~~--------~pgd~Vlv~~P~y~~y~~~~~~~G~~~~-~v---~~~~~~~~--~~~~~~~~~~~~~~~~~~  174 (397)
T d3tata_         109 KVGADFLKRY--------FPESGVWVSDPTWENHVAIFAGAGFEVS-TY---PWYDEATN--GVRFNDLLATLKTLPARS  174 (397)
T ss_dssp             HHHHHHHHHH--------CSSCCCEECSSCCTTHHHHHHTTTCCCE-EC---CCCCTTTS--SCCHHHHHHHHTTCCSSC
T ss_pred             HHHHHHhhhc--------CCCCcceecccCccccHHHHHHcCCEEE-EE---ecchhhcc--ccchHHHHHHhhhccccc
Confidence            554432 222        2789999999999988766654443221 11   11111111  125666666654  2334


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc--cc-cccCCC---cceeeecccccC-C
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AH-EHYGIF---PDIMTLAKPLAG-G  320 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~-~~~~~~---pdi~t~sK~lg~-G  320 (451)
                      .++++.+.++++| .+++++.+++|.++|++||+++|+||+|.++.+.+...  .. ...+..   .-+.++||.++. |
T Consensus       175 ~~~~~~~p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G  253 (397)
T d3tata_         175 IVLLHPCCHNPTG-ADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG  253 (397)
T ss_dssp             CCEECSSSCSSSC-CCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTT
T ss_pred             EEEEecCCCCCCC-eeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccC
Confidence            4444444444445 57899999999999999999999999999885544311  11 111222   223478999985 9


Q ss_pred             cccccccccHHHHhhcc-------CCCccCCCCCcHHHHHHHHHHHHHhc-ChHHH-------HH-------HHhCC---
Q 013008          321 LPIGAALVTEKVASAIN-------YGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFL-------AS-------KLARN---  375 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~-------~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~-------~~-------~~~~~---  375 (451)
                      +|+||++++..+++...       ........+.+...++++...+..-. ...+.       ++       +.+.+   
T Consensus       254 ~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  333 (397)
T d3tata_         254 ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTE  333 (397)
T ss_dssp             TCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999987654443321       11223334445566665555443110 00111       11       22222   


Q ss_pred             -CC--cc-eecccceeEEEEecCChHHHHHHHHH-CCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          376 -PH--VK-DVRGLGLIIGIEFDVSATPVVDACRD-SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       376 -~~--~~-~v~g~G~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                       +.  +. .....|+|.|+.+   ..+++++|++ .||++.|++     ||+++ .+++++|++++++|++++
T Consensus       334 ~~~~~~~~~~~~~G~F~~~~l---s~e~~~~L~~e~~V~l~~g~-----Ri~~a-~~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         334 MPERNFDYLLNQRGMFSYTGL---SAAQVDRLREEFGVYLIASG-----RMCVA-GLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             CTTSCTTHHHHCCSSBCCCCC---CHHHHHHHTTTTCEECCSSS-----CCBTT-SCCTTTHHHHHHHHHHHC
T ss_pred             CCCCceEEEcCCCceEEecCc---CHHHHHHHHHhCCEEeCCCC-----EEEec-cCCHHHHHHHHHHHHHhC
Confidence             11  11 1345677777654   3456777875 599988863     67654 468889999999988763

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.81  E-value=4e-19  Score=175.25  Aligned_cols=317  Identities=12%  Similarity=0.020  Sum_probs=184.1

Q ss_pred             EeeccCcccccCCC--CCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCC--HHHHHH
Q 013008          101 LDLSSGIAVNALGH--GDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNT--GTEANE  169 (451)
Q Consensus       101 iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~s--G~eA~~  169 (451)
                      ||+..|.+...-|.  ..|.|++|..+.+++.. +.+  ..+..+.++++++++.+..+    .+.++.+.+  |+.+..
T Consensus        31 InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~  110 (401)
T d7aata_          31 MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLR  110 (401)
T ss_dssp             EECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHH
T ss_pred             EEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHH
Confidence            67776644333343  34788888888776533 222  12223336666666665554    556655443  333444


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCCe
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKT  247 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~  247 (451)
                      +...+++.+..        ++|.|++++|+|+++.......+...... ++.+ ..+..    .|++.+.+.+.  .+++
T Consensus       111 ~~~~~~~~l~~--------pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~-~~~~-~~~~~----~~~~~~~~~~~~~~~~~  176 (401)
T d7aata_         111 VGANFLQRFFK--------FSRDVYLPKPSWGNHTPIFRDAGLQLQAY-RYYD-PKTCS----LDFTGAMEDISKIPEKS  176 (401)
T ss_dssp             HHHHHHHHHCT--------TCCEEEEEESCCTTHHHHHHHTTCEEEEE-ECEE-TTTTE----ECHHHHHHHHTTSCTTC
T ss_pred             HHHHhhHhhcC--------CCceEEEecCCCcchhhHHHHcCCeEEEE-eccc-ccccc----ccHHHHHHHHhcCCCce
Confidence            44344444443        79999999999999875554433222110 0000 00011    16777777765  3355


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc----cccccCCC---cceeeeccccc-C
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW----AHEHYGIF---PDIMTLAKPLA-G  319 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~----~~~~~~~~---pdi~t~sK~lg-~  319 (451)
                      .++++.+.++++| .+++.+.+++|.++|++|++++|+||+|.++.+.+...    ........   .-+.++||.++ .
T Consensus       177 ~~iii~~p~NPTG-~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~  255 (401)
T d7aata_         177 IILLHACAHNPTG-VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY  255 (401)
T ss_dssp             EEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG
T ss_pred             EEEEecCCCCCcc-ccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceee
Confidence            6666655555555 46899999999999999999999999999986554311    11111122   22347899998 4


Q ss_pred             CcccccccccHHHHhhccCC-------CccCCCCCcHHHHHHHHHHHHHhcChHH-------H--------HH------H
Q 013008          320 GLPIGAALVTEKVASAINYG-------DHGSTFAGSPLVCNAAIAVLDKISNPAF-------L--------AS------K  371 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~~-------~~~~t~~~~~~~~aaa~aal~~~~~~~~-------~--------~~------~  371 (451)
                      |+|+||++++.++.+.....       ......+.+.+.++++...++   ++.+       .        ++      .
T Consensus       256 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  332 (401)
T d7aata_         256 GERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILN---TPELRKEWLVEVKGMADRIISMRTQLVSN  332 (401)
T ss_dssp             GGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999876655543211       112223445566655554443   1111       0        00      1


Q ss_pred             HhCC-C--Ccce-ecccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          372 LARN-P--HVKD-VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       372 ~~~~-~--~~~~-v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      ++.+ +  .... ....|+|.|+.+   ..+++++|+ ++||++.|+     +||+++ ..++++|+.++++|.++++
T Consensus       333 L~~~~~~~~~~~~~~~~G~F~~~~l---s~e~~~~L~~e~gV~~~pg-----~Ris~a-~~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         333 LKKEGSSHNWQHITDQIGMFCFTGL---KPEQVERLTKEFSIYMTKD-----GRISVA-GVASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             HHHTTCCSCCHHHHHCCSSEEECCC---CHHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHHHC
T ss_pred             HHHhCCCCCcceECCCCeEEEecCC---CHHHHHHHHHhCCEEECCC-----cEEEec-cCCHHHHHHHHHHHHHHhC
Confidence            1222 1  1122 244577777654   345677775 579999875     388654 3578889999999988763

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=7.6e-18  Score=166.17  Aligned_cols=320  Identities=15%  Similarity=0.088  Sum_probs=207.6

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-------HHHHHHHHHHhhccC---CCeEEecCCHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-------IPQIELAKRLVACSF---ADRVFFSNTGTEAN  168 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~  168 (451)
                      -|+|..+      .|..++.|.+++.+.+++.........+       ...++..+.+++.++   .+.++|++++|+|+
T Consensus        24 iYld~a~------~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~   97 (405)
T d1jf9a_          24 AYLDSAA------SAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI   97 (405)
T ss_dssp             EECCTTT------CCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred             EEEeCcc------ccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHH
Confidence            4777554      3457889999999988763211111111       124456677888876   46899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA  248 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a  248 (451)
                      ..+++.......       .+++.||+.+..||........+.........+.|..++...    |++.+++++.+ +++
T Consensus        98 ~~~~~~~~~~~~-------~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~----~~~~~~~~i~~-~t~  165 (405)
T d1jf9a_          98 NLVANSWGNSNV-------RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTL----QLETLPTLFDE-KTR  165 (405)
T ss_dssp             HHHHHHHHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCB----CGGGHHHHCCT-TEE
T ss_pred             HHHHhccccccc-------CCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcC----CHHHHHHhccC-CcE
Confidence            988875432211       258889999888887654443332111111011121121111    67888888865 789


Q ss_pred             EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccc
Q 013008          249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAA  326 (451)
Q Consensus       249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v  326 (451)
                      +|.++-+.+..|.+.|    +++|.++|+++|+++++|-+|+ .|..  ......  ..+|++++|  |.+| +-.+|++
T Consensus       166 lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~--~id~~~--~~~D~~~~s~hK~~G-p~G~g~l  235 (405)
T d1jf9a_         166 LLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--PVDVQA--LDCDFYVFSGHKLYG-PTGIGIL  235 (405)
T ss_dssp             EEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHH--HTCSEEEEEGGGTTS-CSSCEEE
T ss_pred             EEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-cccc--ccchhh--cCCceeecccccccc-CCCceee
Confidence            9999999999999999    9999999999999999999985 3321  112222  357887766  8864 3457888


Q ss_pred             cccHHHHhhccCCCccC----------------------CCCCcHHHHHHHHHHHHHhcC---hHHHHH----------H
Q 013008          327 LVTEKVASAINYGDHGS----------------------TFAGSPLVCNAAIAVLDKISN---PAFLAS----------K  371 (451)
Q Consensus       327 ~~~~~i~~~~~~~~~~~----------------------t~~~~~~~~aaa~aal~~~~~---~~~~~~----------~  371 (451)
                      ..++++++.+.+.....                      .-+.|..+.+++.++++.+..   +...++          .
T Consensus       236 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~  315 (405)
T d1jf9a_         236 YVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQ  315 (405)
T ss_dssp             EECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             eechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhh
Confidence            89999887654321000                      012356667777777776543   222111          2


Q ss_pred             HhCCCCcc--eecccceeEEEEec-CChHHHHHHHHHCCceeeecC-----------CCCEEEEeCCCCCCHHHHHHHHH
Q 013008          372 LARNPHVK--DVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       372 ~~~~~~~~--~v~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------~~~~iri~~~~~~t~e~i~~~l~  437 (451)
                      ++..+.+.  .....+.++.+.+. ....++...|-++||.+..+.           ..+.+|+++....|+||||++++
T Consensus       316 l~~~~~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~  395 (405)
T d1jf9a_         316 LESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVT  395 (405)
T ss_dssp             HTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHH
T ss_pred             hhcCCcccccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence            34444321  12233456667663 457778888888999887532           23679999999999999999999


Q ss_pred             HHHHHHHHH
Q 013008          438 ILCKTLPVL  446 (451)
Q Consensus       438 ~l~~~l~~~  446 (451)
                      .|+++++-+
T Consensus       396 ~l~~i~r~~  404 (405)
T d1jf9a_         396 GLQRIHRLL  404 (405)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999887643

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=9.4e-19  Score=172.28  Aligned_cols=318  Identities=13%  Similarity=0.049  Sum_probs=181.6

Q ss_pred             EeeccCcccccCCC--CCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----CC--eEEecCCHHHHHH
Q 013008          101 LDLSSGIAVNALGH--GDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTEANE  169 (451)
Q Consensus       101 iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~e--~v~~~~sG~eA~~  169 (451)
                      ||+..|.+...-|.  ..|.|++|+.+.+++.. +.+  ..+..+.++++++++.+..+    .+  .+..+.+|+.+..
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (396)
T d2q7wa1          29 INLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALR  108 (396)
T ss_dssp             EESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHH
T ss_pred             EEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHH
Confidence            78888755444554  35889999888776632 211  12223336666666655544    23  3445666666666


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCCe
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKT  247 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~  247 (451)
                      .++......         .+++.|++.+|+|.++.......+...... ++... .+..    .+...+++...  ..++
T Consensus       109 l~~~~l~~~---------~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~-~~~~~-~~~~----~~~~~~~~~~~~~~~~~  173 (396)
T d2q7wa1         109 VAADFLAKN---------TSVKRVWVSNPSWPNHKSVFNSAGLEVREY-AYYDA-ENHT----LDFDALINSLNEAQAGD  173 (396)
T ss_dssp             HHHHHHHHH---------SCCCEEEEEESCCTHHHHHHHHTTCEEEEE-ECEET-TTTE----ECHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhhc---------ccceEEEEecCCCccchHHHHHcCCeeEec-ccccc-cccc----cccchHHHHHHHhccCc
Confidence            655544322         268999999999998876655444322111 00000 0000    14455444443  2344


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc--ccc----ccCCCcceeeecccccC-C
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHE----HYGIFPDIMTLAKPLAG-G  320 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~----~~~~~pdi~t~sK~lg~-G  320 (451)
                      .++++.+.++++| .+++.+.+++|.++|++|++++|+||+|.+|.+.+...  ...    .......+.++||.++. |
T Consensus       174 ~~i~~~~P~NPTG-~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G  252 (396)
T d2q7wa1         174 VVLFHGCCHNPTG-IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYN  252 (396)
T ss_dssp             EEEEECSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG
T ss_pred             EEEEecCCcCCcC-eecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccC
Confidence            4555544444445 46899999999999999999999999999986544311  111    11222334478999984 8


Q ss_pred             cccccccccHHHHhhccCC------CccCCCC-CcHHHHHHHHHHHHH----------hc--ChHHHHH------HHhCC
Q 013008          321 LPIGAALVTEKVASAINYG------DHGSTFA-GSPLVCNAAIAVLDK----------IS--NPAFLAS------KLARN  375 (451)
Q Consensus       321 ~~iG~v~~~~~i~~~~~~~------~~~~t~~-~~~~~~aaa~aal~~----------~~--~~~~~~~------~~~~~  375 (451)
                      +|+||++++.++++.+...      ...+++. .+...+.++.+.+..          ++  ...+.++      .++.+
T Consensus       253 ~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  332 (396)
T d2q7wa1         253 ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK  332 (396)
T ss_dssp             GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHT
T ss_pred             CCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999876655443211      1123333 344444444433320          00  0111111      12222


Q ss_pred             C-C--cce-ecccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          376 P-H--VKD-VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       376 ~-~--~~~-v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      . .  ... ....|+|.|+.+   ..+++++|+ +.||++.|++     ||+++ .+++++|++++++|.+++
T Consensus       333 ~~~~~~~~~~~~~G~F~~~~l---~~e~~~~L~~e~gV~~~~g~-----Ri~~a-~l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         333 GANRDFSFIIKQNGMFSFSGL---TKEQVLRLREEFGVYAVASG-----RVNVA-GMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             TCCSCCTHHHHCCSSEEECCC---CHHHHHHHHHHHCEECCTTC-----EEEGG-GCCTTTHHHHHHHHHHHC
T ss_pred             CCCCCcceecCCCeEEEeeCC---CHHHHHHHHHhCCEEECCCC-----EEEec-CCCHHHHHHHHHHHHHhC
Confidence            1 1  111 345687877655   245677776 5799988754     77654 457888999999998764

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.79  E-value=3.9e-19  Score=168.14  Aligned_cols=304  Identities=12%  Similarity=0.057  Sum_probs=164.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 013008          112 LGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP  189 (451)
Q Consensus       112 lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~  189 (451)
                      .| +||+|++|+.++.....+  .++..+...+++++++++++  .++|+||+||+|||..++..+..           +
T Consensus        10 ~g-~~P~v~eAl~~~~~~~~~--~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~-----------~   75 (340)
T d1svva_          10 VG-MHPKILDLMARDNMTQHA--GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR-----------P   75 (340)
T ss_dssp             SC-CCHHHHHHHHHHTTCCCC--STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC-----------T
T ss_pred             CC-CCHHHHHHHHHHhhcCCC--CCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh-----------h
Confidence            45 799999999987654322  33456667889999999998  56899999999999999996652           5


Q ss_pred             CceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhc---C--CCCeEEEEEccccCCCCcccc
Q 013008          190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI---Q--PGKTAAVFVEPIQGEGGIYSA  264 (451)
Q Consensus       190 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l---~--~~~~aavi~ep~~~~~G~~~~  264 (451)
                      +++++.....++................. ..   .....   .+.+...++.   .  ......+++....+++|. ..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  147 (340)
T d1svva_          76 WEAVIATQLGHISTHETGAIEATGHKVVT-AP---CPDGK---LRVADIESALHENRSEHMVIPKLVYISNTTEVGT-QY  147 (340)
T ss_dssp             TEEEEEETTSHHHHSSTTHHHHTTCCEEE-EC---CTTSC---CCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSC-CC
T ss_pred             ccccccccccceeeeecccccccceeeee-cc---ccccc---ccchhHHHHhhhhhcccCCcceeeeecccccccc-cc
Confidence            77777777766543322222111110000 00   00000   1222222221   1  223445555555555554 45


Q ss_pred             CHHHHHHHHHHHHHhCCEEEEeccccCCCcc--cccccccccCCCcceeeecccccCCc-ccccccccHHHHhhccCC--
Q 013008          265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRT--GYLWAHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYG--  339 (451)
Q Consensus       265 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~--G~~~~~~~~~~~pdi~t~sK~lg~G~-~iG~v~~~~~i~~~~~~~--  339 (451)
                      +.+.+..+.+.|+++|+++++|+++.+....  +............++.++++..+.+. ..++..............  
T Consensus       148 ~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (340)
T d1svva_         148 TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIK  227 (340)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHH
T ss_pred             cHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhcc
Confidence            7777999999999999999999998653211  11111111111234555565555432 223333333322222111  


Q ss_pred             CccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecccceeEEEEecCChHHHHHHHHHCCce
Q 013008          340 DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLL  409 (451)
Q Consensus       340 ~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~  409 (451)
                      ....+........+++.+.++........++          .++..+.....+..+.++.+.++   ......|.+++..
T Consensus       228 ~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~~---~~~~~~l~~~~~~  304 (340)
T d1svva_         228 QRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILE---NTMIAELNNDFDM  304 (340)
T ss_dssp             HTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEE---HHHHHHHTTTEEC
T ss_pred             cccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEeCC---HHHHHHHHHhhhh
Confidence            1223333334444443333321111111111          22222221112344555555542   3456667666443


Q ss_pred             ----eeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          410 ----VLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       410 ----~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                          ..+.+. +.+||++++.+|+||||+++++|++
T Consensus       305 ~~~~~~~~~~-~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         305 YTVEPLKDGT-CIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             EEEEEETTTE-EEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             hcccccCCCC-cEEEEECCCCCCHHHHHHHHHHHhc
Confidence                334333 6899999999999999999999986

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.77  E-value=7e-18  Score=166.80  Aligned_cols=320  Identities=14%  Similarity=0.086  Sum_probs=179.3

Q ss_pred             EeeccCcccccCCCC--CHHHHHHHHHHHhhc--cccc--CCCCCHHHHHHHHHHhhccC----CCeEEe--cCCHHHHH
Q 013008          101 LDLSSGIAVNALGHG--DADWIKAVVDQANVL--THVS--NMYYSIPQIELAKRLVACSF----ADRVFF--SNTGTEAN  168 (451)
Q Consensus       101 iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~--~~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~--~~sG~eA~  168 (451)
                      ||+..|.+...-|..  .|.|++|.+......  .+.+  ..+..+.++++++.+.+..+    .+.+..  +.++..+.
T Consensus        32 InL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (412)
T d1yaaa_          32 VDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGAL  111 (412)
T ss_dssp             EECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred             EEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHH
Confidence            777777554445543  377887755443322  2211  11222335555555555443    333332  33444444


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCC
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGK  246 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~  246 (451)
                      ..++.... ..        .++|.|++.+|+|..+.......+...... ++.. ..+..    .|.+.++..+.  ...
T Consensus       112 ~~~~~~~~-~~--------~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~-~~~~-~~~~~----~~~~~~~~~~~~~~~~  176 (412)
T d1yaaa_         112 HISAKFFS-KF--------FPDKLVYLSKPTWANHMAIFENQGLKTATY-PYWA-NETKS----LDLNGFLNAIQKAPEG  176 (412)
T ss_dssp             HHHHHHHH-HH--------CTTCCEEEEESCCTTHHHHHHTTTCCEEEE-ECEE-TTTTE----ECHHHHHHHHHHSCTT
T ss_pred             HHHHHHHh-cc--------CCCCEEecccccCchhHHHHHHcCCceecc-cccc-ccccc----ccchhhhcccccCCCc
Confidence            44443222 22        268999999999988876554433322111 0000 00000    15666666654  334


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-c------ccccCCCcc---eeeeccc
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A------HEHYGIFPD---IMTLAKP  316 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~------~~~~~~~pd---i~t~sK~  316 (451)
                      ..++++.+.++++|. .++++.+++|.++|++|++++|+||+|.+|.+.+... +      ....+..+.   +.++||.
T Consensus       177 ~~~i~i~~P~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~  255 (412)
T d1yaaa_         177 SIFVLHSCAHNPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKN  255 (412)
T ss_dssp             CEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTT
T ss_pred             eEEEEecCCCCCccc-cCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCc
Confidence            556666555555564 6899999999999999999999999999986655311 1      111222232   3378999


Q ss_pred             cc-CCcccccccccHHHHhhccC-----------CCccCCCCCcHHHHHHHHHHHHHhc-ChHH---HHH----------
Q 013008          317 LA-GGLPIGAALVTEKVASAINY-----------GDHGSTFAGSPLVCNAAIAVLDKIS-NPAF---LAS----------  370 (451)
Q Consensus       317 lg-~G~~iG~v~~~~~i~~~~~~-----------~~~~~t~~~~~~~~aaa~aal~~~~-~~~~---~~~----------  370 (451)
                      ++ .|+|+||++++.++.+....           .......+.+.+++.++..+++.-. .+++   ++.          
T Consensus       256 ~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~  335 (412)
T d1yaaa_         256 AGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRH  335 (412)
T ss_dssp             SCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            98 59999999987554332210           1123345567777777776654210 0011   110          


Q ss_pred             -H---HhC--CC-Ccceec-ccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008          371 -K---LAR--NP-HVKDVR-GLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK  441 (451)
Q Consensus       371 -~---~~~--~~-~~~~v~-g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~  441 (451)
                       +   ++.  .+ .+..+. ..|+|.|+.+   ..+++++|+ +.||++.|++     ||+++ .+++++|+.++++|.+
T Consensus       336 ~l~~~L~~~g~~~~~~~~~~~gG~F~~~~l---s~e~~~~L~~e~~V~~~~g~-----Ris~~-g~~~~~i~~l~~ai~~  406 (412)
T d1yaaa_         336 ALRDHLVKLGTPGNWDHIVNQCGMFSFTGL---TPQMVKRLEETHAVYLVASG-----RASIA-GLNQGNVEYVAKAIDE  406 (412)
T ss_dssp             HHHHHHHHHTCSSCCTHHHHCCSSEEECCC---CHHHHHHHHHHHCEECCTTS-----EEEGG-GCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCceeCCCceEEEecCc---CHHHHHHHHHhCCEEECCCC-----EEEec-cCCHHHHHHHHHHHHH
Confidence             1   111  11 122233 3466665543   345677775 5799887753     77654 3577889999999999


Q ss_pred             HHHH
Q 013008          442 TLPV  445 (451)
Q Consensus       442 ~l~~  445 (451)
                      +++.
T Consensus       407 v~k~  410 (412)
T d1yaaa_         407 VVRF  410 (412)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8864

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=7.7e-17  Score=158.04  Aligned_cols=312  Identities=16%  Similarity=0.188  Sum_probs=187.0

Q ss_pred             EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCC-------HHHHHHHHHHhhccC--CCeEEecCCHHHHH
Q 013008          100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYS-------IPQIELAKRLVACSF--ADRVFFSNTGTEAN  168 (451)
Q Consensus       100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~-------~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~  168 (451)
                      |+|..+.      |..+|.|++|+.+.+.+.....+.  ..+       +...++.++++++++  .++|.|++|+++++
T Consensus         5 YlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l   78 (391)
T d1p3wa_           5 YLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD   78 (391)
T ss_dssp             ECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred             EeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHH
Confidence            6776553      457899999999877643221111  111       123456677888887  67999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc--cCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHh
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKL  241 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~  241 (451)
                      ..++..+.....       .+++.||+.++.|+........+  .|.            .+..+|.+     |+++++++
T Consensus        79 ~~~~~~~~~~~~-------~~gd~Vv~~~~~~~s~~~~~~~~~~~G~------------~v~~v~~~~~~~~d~~~~~~~  139 (391)
T d1p3wa_          79 NLAIKGAANFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGF------------EVTYLAPQRNGIIDLKELEAA  139 (391)
T ss_dssp             HHHHHHHHHHHG-------GGCCEEEEETTSCHHHHHHHHHHHHTTC------------EEEEECCCTTSCCCHHHHHHH
T ss_pred             HHHHhhhhhhhc-------CCCCEEEEeccccchHHHHHHHHHHcCC------------EEEEeCCCCCCeEcHHHHHHh
Confidence            999886653221       15789999998887654322211  111            12222221     78999999


Q ss_pred             cCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccC
Q 013008          242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG  319 (451)
Q Consensus       242 l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~  319 (451)
                      +++ ++++|+++.+++++|.+.+    +++|.++|++||+++++|.+|+ +|..    ..+.....+|++++  .|.+| 
T Consensus       140 i~~-~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~----~~d~~~~~~D~~~~s~~k~~g-  208 (391)
T d1p3wa_         140 MRD-DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL----PIDLSQLKVDLMSFSGHKIYG-  208 (391)
T ss_dssp             CCT-TEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB----CCCTTTSCCSEEEEESTTTTS-
T ss_pred             CCC-CcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc----cccchhccccccccccccccC-
Confidence            965 7899999999888998888    9999999999999999999995 4322    11222334676654  46654 


Q ss_pred             CcccccccccHHHHhhccCCCccC-------CCCCcHHHHHHHHHHHHHhcC--hH-------HHHHHHhCCCCcce--e
Q 013008          320 GLPIGAALVTEKVASAINYGDHGS-------TFAGSPLVCNAAIAVLDKISN--PA-------FLASKLARNPHVKD--V  381 (451)
Q Consensus       320 G~~iG~v~~~~~i~~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~--~~-------~~~~~~~~~~~~~~--v  381 (451)
                      +..+|++.++++......+...++       +...+.....+....++....  ..       +.+.+.+.+..+..  +
T Consensus       209 ~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  288 (391)
T d1p3wa_         209 PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYL  288 (391)
T ss_dssp             CSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEE
T ss_pred             CCceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCeee
Confidence            345688878777666554332221       111222222222222222111  01       11113333321111  0


Q ss_pred             -----cccceeEEEEe-cCChHHHHHHHHHCCceeeec-----------------C-----CCCEEEEeCCCCCCHHHHH
Q 013008          382 -----RGLGLIIGIEF-DVSATPVVDACRDSGLLVLTA-----------------G-----KGNVVRLVPPLIISEQELD  433 (451)
Q Consensus       382 -----~g~G~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~-----------------~-----~~~~iri~~~~~~t~e~i~  433 (451)
                           .....+..+.+ ......+...|.  ++.+..+                 +     .++.+|++++..+|+||||
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid  366 (391)
T d1p3wa_         289 NGDLEHGAPNILNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID  366 (391)
T ss_dssp             CSCTTTSCTTEEEEEETTSCHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred             cccccccCceEEEEEeCCCChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHH
Confidence                 11122333333 244556666553  3333211                 0     0146999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 013008          434 QAVEILCKTLPVLDSN  449 (451)
Q Consensus       434 ~~l~~l~~~l~~~~~~  449 (451)
                      ++++.|+++++++++.
T Consensus       367 ~l~~~l~~~l~~lr~~  382 (391)
T d1p3wa_         367 YTIELVRKSIGRLRDL  382 (391)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998864

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.77  E-value=1.8e-16  Score=156.34  Aligned_cols=314  Identities=14%  Similarity=0.096  Sum_probs=202.0

Q ss_pred             EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-------HHHHHHHHHHhhccC---CCeEEecCCHHHHH
Q 013008           99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-------IPQIELAKRLVACSF---ADRVFFSNTGTEAN  168 (451)
Q Consensus        99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~  168 (451)
                      -|+|..+      .|..++.|.+++.+.+++.........+       ...++..+.++++++   .+.+++++++++++
T Consensus        24 iYld~a~------~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~   97 (408)
T d1t3ia_          24 VYLDNAA------TSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI   97 (408)
T ss_dssp             EECBTTT------CCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred             EEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence            4788655      3457888999999988763211111111       124456677888886   46799999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcC
Q 013008          169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQ  243 (451)
Q Consensus       169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~  243 (451)
                      ..++..+....-       ++++.|++.+..|+..............         ..+..+|.     .|.+.+++++.
T Consensus        98 n~~~~~~~~~~~-------~~g~~il~s~~e~~s~~~~~~~~~~~~g---------~~v~~~~~~~~~~~~~~~l~~~~~  161 (408)
T d1t3ia_          98 NLVAYSWGMNNL-------KAGDEIITTVMEHHSNLVPWQMVAAKTG---------AVLKFVQLDEQESFDLEHFKTLLS  161 (408)
T ss_dssp             HHHHHHTHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHC---------CEEEEECBCTTSSBCHHHHHHHCC
T ss_pred             HHHHhhcccccc-------CCCCEEEeecccchhhhhhhhhhhhccC---------ceEeeeeccccccccHHHhhhccC
Confidence            888775432211       2577888877776654433222111000         01111211     16889999886


Q ss_pred             CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCc
Q 013008          244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGL  321 (451)
Q Consensus       244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~  321 (451)
                      + ++++|.+..+++..|.+.|    +++|.++|+++|+++|+|-+|+ +|..  ..-...  ..+|++++|  |.+ |+.
T Consensus       162 ~-~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~--~id~~~--~~~D~~~~s~hK~~-gp~  230 (408)
T d1t3ia_         162 E-KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHY--PLDVQL--IDCDWLVASGHKMC-APT  230 (408)
T ss_dssp             T-TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHH--HTCSEEEEEGGGTT-SCT
T ss_pred             C-CceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-cccc--cccccc--cCCceEEecccccc-CCC
Confidence            4 7899999999999999988    9999999999999999999985 4322  112222  347888776  764 345


Q ss_pred             ccccccccHHHHhhccCCCccC---------------------CCCCcHHHHHHHHHHHHHhcC---hHHHHH-------
Q 013008          322 PIGAALVTEKVASAINYGDHGS---------------------TFAGSPLVCNAAIAVLDKISN---PAFLAS-------  370 (451)
Q Consensus       322 ~iG~v~~~~~i~~~~~~~~~~~---------------------t~~~~~~~~aaa~aal~~~~~---~~~~~~-------  370 (451)
                      .+|++..++++.....+...++                     +-+.|....+++.++++.+.+   +.+.++       
T Consensus       231 G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~  310 (408)
T d1t3ia_         231 GIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHY  310 (408)
T ss_dssp             TCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhH
Confidence            6788999998876654321110                     112355666666777776543   222221       


Q ss_pred             ---HHhCCCCccee------cccceeEEEEec-CChHHHHHHHHHCCceeeec-----------CCCCEEEEeCCCCCCH
Q 013008          371 ---KLARNPHVKDV------RGLGLIIGIEFD-VSATPVVDACRDSGLLVLTA-----------GKGNVVRLVPPLIISE  429 (451)
Q Consensus       371 ---~~~~~~~~~~v------~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~-----------~~~~~iri~~~~~~t~  429 (451)
                         .++..+.+..+      ...+.++.+.++ ....++...|.++||.+..+           +.++.+||++....|+
T Consensus       311 l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~  390 (408)
T d1t3ia_         311 LWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTK  390 (408)
T ss_dssp             HHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCH
T ss_pred             HhhhhccCccccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCH
Confidence               23444433211      122445666663 46778888888899988643           1235799999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013008          430 QELDQAVEILCKTLPV  445 (451)
Q Consensus       430 e~i~~~l~~l~~~l~~  445 (451)
                      +|||++++.|+++++.
T Consensus       391 ~did~li~~L~~~~~~  406 (408)
T d1t3ia_         391 EEIDLFLQSLQATIRF  406 (408)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999875

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=1.7e-17  Score=162.93  Aligned_cols=314  Identities=12%  Similarity=0.034  Sum_probs=175.7

Q ss_pred             EeeccCcccccCCC--CCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHH
Q 013008          101 LDLSSGIAVNALGH--GDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAI  172 (451)
Q Consensus       101 iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al  172 (451)
                      ||+..|.+-..-|.  ..|.|.+|+.+.+++.. +.+  ..+..+.++++++++.....   ....+.+.+|+.+...++
T Consensus        29 InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (394)
T d2ay1a_          29 IDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQAL  108 (394)
T ss_dssp             EECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHH
T ss_pred             EEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHH
Confidence            56655544333444  35899999988877643 222  11222336666666654443   345666777777766666


Q ss_pred             HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCCeEEE
Q 013008          173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAV  250 (451)
Q Consensus       173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~aav  250 (451)
                      .+....         .+++.|++.+|+|..+.......+...... ++.......     .+.+.+++...  ..++.++
T Consensus       109 ~~~~~~---------~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~  173 (394)
T d2ay1a_         109 ELARMA---------NPDLRVFVSDPTWPNHVSIMNFMGLPVQTY-RYFDAETRG-----VDFEGMKADLAAAKKGDMVL  173 (394)
T ss_dssp             HHHHHH---------CTTCCEEEEESCCHHHHHHHHHHTCCEEEE-ECEETTTTE-----ECHHHHHHHHHTCCTTCEEE
T ss_pred             HHhhhc---------CCceEEEEecccccchHHHHHHcCCEEEEe-cccchhccc-----ccchhHHHHHhhcccCcEEE
Confidence            544332         268999999999987765544433221110 000000000     13444444432  2344455


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc--cc---ccC-CCcceeeecccccC-Cccc
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA--HE---HYG-IFPDIMTLAKPLAG-GLPI  323 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~--~~---~~~-~~pdi~t~sK~lg~-G~~i  323 (451)
                      ++.+.++++| ..++.+.+++|.++|++|++++|+||+|.+|.+.+....  ..   ..+ ....+.++||.++. |+|+
T Consensus       174 ~~~~p~NPTG-~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~  252 (394)
T d2ay1a_         174 LHGCCHNPTG-ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT  252 (394)
T ss_dssp             EESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE
T ss_pred             EeCCCCCCCC-CCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccc
Confidence            5544444455 578999999999999999999999999999866553111  10   111 12223478999884 8999


Q ss_pred             ccccccHHHHhhccCC------CccCCC-CCcHHHHHHHHHHHHHhcChHH-----------HHH-------HHhCC---
Q 013008          324 GAALVTEKVASAINYG------DHGSTF-AGSPLVCNAAIAVLDKISNPAF-----------LAS-------KLARN---  375 (451)
Q Consensus       324 G~v~~~~~i~~~~~~~------~~~~t~-~~~~~~~aaa~aal~~~~~~~~-----------~~~-------~~~~~---  375 (451)
                      |+++++..+.+.....      ....++ +.+...++.+...+.   .+.+           .++       +.+.+   
T Consensus       253 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  329 (394)
T d2ay1a_         253 GCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLT---TPELRADWMAELEAVRSGMLRLREQLAGELRDL  329 (394)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHH---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998875544432110      111222 233333333333222   1111           000       11111   


Q ss_pred             --C-Ccce-ecccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008          376 --P-HVKD-VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT  442 (451)
Q Consensus       376 --~-~~~~-v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~  442 (451)
                        + .... ....|+|.|+.+   ..+++++|+ ++||++.|++     ||+++ .+++++|+.++++|.++
T Consensus       330 ~~~~~~~~~~~~~G~F~~~~l---s~~~~~~L~~~~~V~~~~g~-----Ri~~a-~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         330 SGSDRFGFVAEHRGMFSRLGA---TPEQVKRIKEEFGIYMVGDS-----RINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             HTSSTTTHHHHCCSSEEECCC---CHHHHHHHHHHHCEECCTTC-----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             CCCCceeeECCCceeEEecCc---CHHHHHHHHHhCCEEecCCC-----EEEec-CCCHHHHHHHHHHHHHh
Confidence              1 1111 234577877655   345677776 5799998853     88764 46888898888888765

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.72  E-value=3.6e-18  Score=168.45  Aligned_cols=269  Identities=14%  Similarity=0.088  Sum_probs=165.3

Q ss_pred             HHHHHHHHhhcc---C-----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008          142 QIELAKRLVACS---F-----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK  213 (451)
Q Consensus       142 ~~~l~~~l~~~~---~-----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~  213 (451)
                      ..+|.+.+++.+   +     ..+|++++|++|++.+++.++.....   .....|+++||++.|.|..+...+....+.
T Consensus       102 ~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~---~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~  178 (425)
T d2hoxa1         102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMT---ATPDAPESKVVAHAPFYPVFREQTKYFDKK  178 (425)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTT---TCTTSCCEEEEECSSCCHHHHHHHHHSCBT
T ss_pred             CHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccc---cccCCCCCEEEEecCccccHHHHHHHcCCC
Confidence            356777777654   3     33699999999999999996641100   000126899999999998775444332221


Q ss_pred             CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008          214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG  293 (451)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g  293 (451)
                                  ...+ . .|.+.+++.+.++....+++.|.|++ |.+..           +..+++.+|.||+|.+..
T Consensus       179 ------------~~~~-~-~D~~~~~~~~~~~~~ii~l~sPnNPt-G~l~~-----------~v~~~~~~I~DEaY~~~~  232 (425)
T d2hoxa1         179 ------------GYVW-A-GNAANYVNVSNPEQYIEMVTSPNNPE-GLLRH-----------AVIKGCKSIYDMVYYWPH  232 (425)
T ss_dssp             ------------TEEE-E-EEGGGGTTCSCGGGEEEEEESSCTTT-CCCCC-----------CSSTTCEEEEECTTCSTT
T ss_pred             ------------CCcc-C-CCHHHHHhhCCCCceEEEEECCCCCC-cchhh-----------hhhhCCEEEEeccccCcc
Confidence                        1111 1 16677777776544455666666555 44311           334689999999995432


Q ss_pred             cccccccccccCCCcceeeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc--------
Q 013008          294 RTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--------  363 (451)
Q Consensus       294 r~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--------  363 (451)
                      .+...   ....-..-+-+|||.++ .|+|+||+++ ++.+++.+.......+++.+.++|.++.++|+...        
T Consensus       233 f~~~~---~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~  309 (425)
T d2hoxa1         233 YTPIK---YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKG  309 (425)
T ss_dssp             TSCCC---SCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchh---hhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHH
Confidence            22111   11111222347899999 6999999765 57777776544445677888899999998886421        


Q ss_pred             -ChHHH--------HH------HHhCCCCc---------------ceecccceeEEEEecCChH-HHHHHHHHCCceeee
Q 013008          364 -NPAFL--------AS------KLARNPHV---------------KDVRGLGLIIGIEFDVSAT-PVVDACRDSGLLVLT  412 (451)
Q Consensus       364 -~~~~~--------~~------~~~~~~~~---------------~~v~g~G~~~~~~~~~~~~-~~~~~l~~~Gv~~~~  412 (451)
                       ..++.        ++      .++..+..               ......+.+.|+.+..... ...+.|.++||++.|
T Consensus       310 ~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~p  389 (425)
T d2hoxa1         310 TMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQN  389 (425)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEe
Confidence             01111        11      11221110               1123445667777643222 344556789999998


Q ss_pred             cC---C-CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008          413 AG---K-GNVVRLVPPLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       413 ~~---~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.   . ++++||  ++..++|++++++++|+++++
T Consensus       390 Gs~FG~~~~yvRi--sl~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         390 GVGFEASSRYVRL--SLIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             GGGGTSCTTEEEE--ECSSCHHHHHHHHHHHHHHHT
T ss_pred             chhcCCCCCEEEE--EecCCHHHHHHHHHHHHHHHh
Confidence            63   2 468888  566789999999999999885

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.70  E-value=5.2e-16  Score=154.70  Aligned_cols=325  Identities=15%  Similarity=0.110  Sum_probs=180.8

Q ss_pred             CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHH
Q 013008           97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR  176 (451)
Q Consensus        97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~  176 (451)
                      ...+||+.+-.++..       +.+++..++..+.-  .+..++...+|++++++++|.+.+++++||+.|+..++++..
T Consensus        41 ~~v~iDl~sDs~t~a-------m~~~~~aa~~~GDd--~Y~~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~  111 (456)
T d1c7ga_          41 KDIYIDLLTDSGTNA-------MSDKQWAGMMIGDE--AYAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAI  111 (456)
T ss_dssp             GGCSEECSCSSSCCC-------EEHHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHC
T ss_pred             cceeeEcccCCCccc-------chHHHHHHHhccch--hccCCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhc
Confidence            346889888665321       12333333322211  123466689999999999999999999999999999999765


Q ss_pred             HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC--cCC-CCcCCCCCeeEeeCCCHHHHHHhcC---CCCeEEE
Q 013008          177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH--YRS-PFEPVMPGVNFVEYGNIEATRKLIQ---PGKTAAV  250 (451)
Q Consensus       177 ~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~d~~~le~~l~---~~~~aav  250 (451)
                      .           +++.|+. ...|+.........++.+.  ... ...+...+ .+-...|++.|++.|+   ++.++.+
T Consensus       112 ~-----------~Gd~Vi~-~~~f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~-~~~~~~d~~~le~~I~~~~~~~~~~i  178 (456)
T d1c7ga_         112 K-----------PGQYVAG-NMYFTTTRFHQEKNGATFVDIVRDEAHDASLNL-PFKGDIDLNKLATLIKEKGAENIAYI  178 (456)
T ss_dssp             C-----------TTEEEEE-SSCCHHHHHHHHHTTEEEEECBCGGGGCTTCCC-SCTTCBCHHHHHHHHHHHCGGGEEEE
T ss_pred             C-----------CCCeEec-CcchHHHHHHHHHcCceeeeccccccccccccC-CccccCCHHHHHHHhhhcCCccceeE
Confidence            1           5666554 3334332211111111110  000 00000000 0001128999999997   3467888


Q ss_pred             EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC----------cccccc---cccccCCCcceeeec--c
Q 013008          251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG----------RTGYLW---AHEHYGIFPDIMTLA--K  315 (451)
Q Consensus       251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g----------r~G~~~---~~~~~~~~pdi~t~s--K  315 (451)
                      ++|..++.+|..+.+.+++++|+++|++||+++|.|+++..-.          +.+...   ..+.+ -..|++++|  |
T Consensus       179 ~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~-~~ad~~s~s~~K  257 (456)
T d1c7ga_         179 CLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMF-SYADGCTMSGKK  257 (456)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH-TTCSEEEEETTT
T ss_pred             EeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccc-cccccEEEeccc
Confidence            8988878777788999999999999999999999999974100          001000   00001 135777654  6


Q ss_pred             cccCCccccccccc-HHHHhhccCC----CccCCCCC-cHHHHHHHHHHHHHhcChHHHHH-----------HHh-CCCC
Q 013008          316 PLAGGLPIGAALVT-EKVASAINYG----DHGSTFAG-SPLVCNAAIAVLDKISNPAFLAS-----------KLA-RNPH  377 (451)
Q Consensus       316 ~lg~G~~iG~v~~~-~~i~~~~~~~----~~~~t~~~-~~~~~aaa~aal~~~~~~~~~~~-----------~~~-~~~~  377 (451)
                      .++++ ..|+++.+ +++.+.++..    ....++++ +...+.+....+....++++.++           +.+ ..|.
T Consensus       258 ~~~~~-~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~g~~v  336 (456)
T d1c7ga_         258 DCLVN-IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAGVPI  336 (456)
T ss_dssp             TTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred             ccccc-ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            55531 22555554 5666655321    12223333 33333443344444444444332           222 2232


Q ss_pred             cceecccceeEEEEec----------CChHHHHHHH-HHCCceeeecC----------------CCCEEEEeCC-CCCCH
Q 013008          378 VKDVRGLGLIIGIEFD----------VSATPVVDAC-RDSGLLVLTAG----------------KGNVVRLVPP-LIISE  429 (451)
Q Consensus       378 ~~~v~g~G~~~~~~~~----------~~~~~~~~~l-~~~Gv~~~~~~----------------~~~~iri~~~-~~~t~  429 (451)
                      +  .+..+....++..          .....+...+ .+.||...+.+                ..+.+|+++| ...|+
T Consensus       337 v--~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~  414 (456)
T d1c7ga_         337 V--EPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTY  414 (456)
T ss_dssp             C--SSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCH
T ss_pred             c--cCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCH
Confidence            2  1223334444321          1233444444 46687654321                0135899877 56799


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 013008          430 QELDQAVEILCKTLPVLD  447 (451)
Q Consensus       430 e~i~~~l~~l~~~l~~~~  447 (451)
                      |+||.++++|+++.++.+
T Consensus       415 e~iD~Vae~i~~v~~~~~  432 (456)
T d1c7ga_         415 AHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             HHHHHHHHHHHHHHTTGG
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999999886543

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.69  E-value=1.8e-15  Score=146.42  Aligned_cols=281  Identities=17%  Similarity=0.170  Sum_probs=183.4

Q ss_pred             ccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc
Q 013008          131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL  210 (451)
Q Consensus       131 ~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~  210 (451)
                      ++.|....++....|+++|+++.+.+.++.++||..|+..++..+.           +++|.||+.+..|++........
T Consensus        58 ~~~Y~R~~nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~-----------~~Gd~iv~~~~~Yg~t~~l~~~~  126 (398)
T d1qgna_          58 SFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALV-----------PAGGHIVTTTDCYRKTRIFIETI  126 (398)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS-----------CSSCEEEEETTSCHHHHHHHHHT
T ss_pred             CceecCCCChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhcc-----------cccccccccccccchhhhhhccc
Confidence            3445666788899999999999999999999999999999988654           26999999999997764332221


Q ss_pred             cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008          211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC  290 (451)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  290 (451)
                      .         ....-.+.+++..|.+..++.+...++++|++|.+.++...++.    +++|+++|+++|+++|+|....
T Consensus       127 ~---------~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~a  193 (398)
T d1qgna_         127 L---------PKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFA  193 (398)
T ss_dssp             G---------GGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred             c---------cccccccccccccchhhhhhhhccccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceee
Confidence            1         11122345565556665555544458999999999888777666    9999999999999999999874


Q ss_pred             CCCcccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--
Q 013008          291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--  364 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--  364 (451)
                      ..      ..+.-+....|++  +++|.++| | .-.|+++.+++++..++.......-..+|..+...+..|+.+.-  
T Consensus       194 tP------~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL~lRm  267 (398)
T d1qgna_         194 TP------LNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRV  267 (398)
T ss_dssp             CT------TTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHH
T ss_pred             cc------ccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHHHHHH
Confidence            21      1233334457776  56799987 5 67788888888877664332222223567777666655553310  


Q ss_pred             hHHH------HHHHhCCCCccee------------------cccceeEEEEecCCh---HHHHHHHH--HCCceee----
Q 013008          365 PAFL------ASKLARNPHVKDV------------------RGLGLIIGIEFDVSA---TPVVDACR--DSGLLVL----  411 (451)
Q Consensus       365 ~~~~------~~~~~~~~~~~~v------------------~g~G~~~~~~~~~~~---~~~~~~l~--~~Gv~~~----  411 (451)
                      +...      .++++.+|.+..|                  .|.|.++.|+++...   .+|++.|.  ..+.-+.    
T Consensus       268 ~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~S  347 (398)
T d1qgna_         268 QQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCES  347 (398)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSC
T ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcc
Confidence            1111      1155666655443                  345778888875333   34444442  1122111    


Q ss_pred             ----ec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          412 ----TA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       412 ----~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                          |.               | .++.+|+++.+    |+.+.+++.|+++|++
T Consensus       348 Li~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~~  397 (398)
T d1qgna_         348 IVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALDS  397 (398)
T ss_dssp             EEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             eeeCcchhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHhc
Confidence                10               1 13679997665    5666778888888765

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.69  E-value=5.4e-15  Score=145.11  Aligned_cols=319  Identities=17%  Similarity=0.086  Sum_probs=197.9

Q ss_pred             CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-ccc-----CCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHH
Q 013008           96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS-----NMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEA  167 (451)
Q Consensus        96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~-----~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA  167 (451)
                      ++.-|+|..+      .|..+..|.+++.+.+.+.. ...     .....+..++..++++++++  .+.+.|++++|++
T Consensus        26 ~~~iYLd~as------~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~   99 (404)
T d1qz9a_          26 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN   99 (404)
T ss_dssp             TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred             CCCEEcCCcc------cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence            4567888654      56677889999999876521 110     01112345678888999987  7799999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCe
Q 013008          168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT  247 (451)
Q Consensus       168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  247 (451)
                      +..++...........     +++.+|+.+..++.............. .   .+    +......+++.+++++.+ ++
T Consensus       100 ~~~~~~~~~~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~-~---~~----~~~~~~~~~~~~~~~i~~-~T  165 (404)
T d1qz9a_         100 LFKVLSAALRVQATRS-----PERRVIVTETSNFPTDLYIAEGLADML-Q---QG----YTLRLVDSPEELPQAIDQ-DT  165 (404)
T ss_dssp             HHHHHHHHHHHHHHHS-----TTCCEEEEETTSCHHHHHHHHHHHHHH-C---SS----CEEEEESSGGGHHHHCST-TE
T ss_pred             HHHHhhhhhhhhcccC-----CCcEEEEeccccchHHHHHHhhhheee-e---ec----eeccccccchhHHHhcCC-Cc
Confidence            9887765432221111     366777777766654332222111100 0   01    111112366788888865 78


Q ss_pred             EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCC-cccc
Q 013008          248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGG-LPIG  324 (451)
Q Consensus       248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G-~~iG  324 (451)
                      ++|.+..+++..|.+.|    +++|.++|+++|+++++|-+|+ +|...  ...+.  ..+|+.+++  |.+.+| ..+|
T Consensus       166 ~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~--~~~~~--~~~d~~~~s~~K~~~~~~g~~g  236 (404)
T d1qz9a_         166 AVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQ--AGADYAIGCTYKYLNGGPGSQA  236 (404)
T ss_dssp             EEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHH--HTCSEEEECSSSTTCCCTTCCC
T ss_pred             eEEEEecccccccceec----HHHHhccccccccceeEEeecc-ccccc--ccccc--ccceEEEEechhhcccCCceEE
Confidence            99999999999999998    9999999999999999999995 43221  12222  345666554  877654 3356


Q ss_pred             cccccHHHHhhccCCCc-----------------------cCCCCCcHHHHHHHHHHHHHhcCh---HHHHH--------
Q 013008          325 AALVTEKVASAINYGDH-----------------------GSTFAGSPLVCNAAIAVLDKISNP---AFLAS--------  370 (451)
Q Consensus       325 ~v~~~~~i~~~~~~~~~-----------------------~~t~~~~~~~~aaa~aal~~~~~~---~~~~~--------  370 (451)
                      ++..++++.+.+.+...                       ......+..+.....++++.+...   ...++        
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  316 (404)
T d1qz9a_         237 FVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLF  316 (404)
T ss_dssp             EEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence            66667666554432100                       011123455555555666554431   22111        


Q ss_pred             --H---HhCCCCccee-----cccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCC-CCCCHHHHHHHHHHH
Q 013008          371 --K---LARNPHVKDV-----RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPP-LIISEQELDQAVEIL  439 (451)
Q Consensus       371 --~---~~~~~~~~~v-----~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~-~~~t~e~i~~~l~~l  439 (451)
                        +   +...+.+.-+     ...+.++.+.+. .+.++.+.|.++||.+..... +.+||+|. +-.|++||++++++|
T Consensus       317 ~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~-~~~~v~~~L~~~gi~~~~r~~-~~lRiS~~h~ynt~~did~~~~~L  394 (404)
T d1qz9a_         317 IELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-EGYAVIQALIDRGVIGDYREP-RIMRFGFTPLYTTFTEVWDAVQIL  394 (404)
T ss_dssp             HHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-THHHHHHHHHTTTEECEEETT-TEEEEECCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHhhccCCCEEEECCCCccceeeEEEEecC-CHHHHHHHHHHCCCEEeecCC-CeEEEECCCCCCCHHHHHHHHHHH
Confidence              1   1122222211     223556666553 577899999999997755433 78999984 668999999999999


Q ss_pred             HHHHHH
Q 013008          440 CKTLPV  445 (451)
Q Consensus       440 ~~~l~~  445 (451)
                      ++++++
T Consensus       395 ~~vl~~  400 (404)
T d1qz9a_         395 GEILDR  400 (404)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999975

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.9e-16  Score=150.84  Aligned_cols=304  Identities=16%  Similarity=0.121  Sum_probs=184.8

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC-C--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA-D--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      -+|+|++|+....  ..|.+ .-..+...+..+.|++.++. +  .|+|+.|||+|++.++..+.           .+++
T Consensus        30 ~~~~Vl~am~~~~--i~HRs-~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~-----------~~~~   95 (388)
T d1h0ca_          30 LPPRIMAAGGLQM--IGSMS-KDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL-----------EPGD   95 (388)
T ss_dssp             CCHHHHHHHTCCC--CCTTS-HHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-----------CSSC
T ss_pred             CCHHHHHHhCcCC--CCCCC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh-----------ccCC
Confidence            3688887764211  11110 01123367788888888872 2  58899999999999999765           2688


Q ss_pred             eEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008          192 EFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ  270 (451)
Q Consensus       192 ~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~  270 (451)
                      ++++...++++......... +.....  . ....+..    -|.+.+++.+...++.+|.+..+.+.+|.+.|    ++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p----i~  164 (388)
T d1h0ca_          96 SFLVGANGIWGQRAVDIGERIGARVHP--M-TKDPGGH----YTLQEVEEGLAQHKPVLLFLTHGESSTGVLQP----LD  164 (388)
T ss_dssp             CEEECBSSHHHHHHHHHHHHHC--CBC--C-BCCTTCC----CCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred             ceeeecccceeeeeccccccccccccc--c-ccCCccc----cchHHHHHHhccCCcceEEEeeeeeccccccC----HH
Confidence            89888877766543322211 111100  0 0000110    15667766665445677777778888888888    99


Q ss_pred             HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCC--------
Q 013008          271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD--------  340 (451)
Q Consensus       271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~--------  340 (451)
                      +|.++|++||+++++|.+++ +|..    ..+......|++++|  |.+++-..+|++..+++..+.+....        
T Consensus       165 ~i~~~~~~~g~~~~vD~~qs-~g~~----~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (388)
T d1h0ca_         165 GFGELCHRYKCLLLVDSVAS-LGGT----PLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYL  239 (388)
T ss_dssp             THHHHHHTTTCEEEEECTTT-TTTS----CCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTT
T ss_pred             HHHHHhhcccccceeccccc-cccc----cccccccccceecccccccccCCCceEEEeecHHHHHhhhhcccccccccc
Confidence            99999999999999999996 4321    222334456777765  77765345566777776665543210        


Q ss_pred             --------------c-cCCCCCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCC---Ccceec-ccceeE
Q 013008          341 --------------H-GSTFAGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNP---HVKDVR-GLGLII  388 (451)
Q Consensus       341 --------------~-~~t~~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~---~~~~v~-g~G~~~  388 (451)
                                    . ......+.....+..++++.+.+.++   .++          .++..+   ...+.. ....+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~  319 (388)
T d1h0ca_         240 DIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVT  319 (388)
T ss_dssp             CHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEE
T ss_pred             ccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEE
Confidence                          0 01112344555666666766533211   111          112111   111111 112345


Q ss_pred             EEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEe-CCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008          389 GIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLV-PPLIISEQELDQAVEILCKTLPVLDS  448 (451)
Q Consensus       389 ~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~-~~~~~t~e~i~~~l~~l~~~l~~~~~  448 (451)
                      .+.+.  .+..++.+.|+++ ||.+..+.   .+..+||+ +....|.||||+++++|+++|++++.
T Consensus       320 ~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k  386 (388)
T d1h0ca_         320 TVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPK  386 (388)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEECCCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            56562  4678898998765 99887653   25789998 66778999999999999999998864

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=6.8e-15  Score=141.96  Aligned_cols=278  Identities=16%  Similarity=0.174  Sum_probs=182.2

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .|....++....|+++|+++.+.+.++.++||..|+..++..+.           +++|+||+.+..|+|......... 
T Consensus        52 ~Y~R~~nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~-----------~~Gd~vl~~~~~Yg~t~~l~~~~~-  119 (392)
T d1gc0a_          52 FYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLL-----------RPGDEVLLGNTLYGCTFAFLHHGI-  119 (392)
T ss_dssp             -----CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSCCSHHHHHHHHTG-
T ss_pred             eecCCCChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhc-----------cCCCeeecccccchhhhhhhhhhh-
Confidence            35666788899999999999999999999999999999988665           269999999999987654332211 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                              ....-.+.+++..|++.+++++++ ++++|++|.+.++...+++    +++|+++|+++|+++|+|..++.-
T Consensus       120 --------~~~Gi~~~~~d~~d~~~~~~ai~~-~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~atP  186 (392)
T d1gc0a_         120 --------GEFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP  186 (392)
T ss_dssp             --------GGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH
T ss_pred             --------ccCCcccccCCccCHHHHHHhCCC-CCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccCc
Confidence                    122234567888899999999975 6899999999888887777    999999999999999999997421


Q ss_pred             CcccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcC--
Q 013008          293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN--  364 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~--  364 (451)
                            ..+.-+....|++  +.+|.++| | .-.|.++++++.+..++..  .....-..+|..+...+..|+.+.-  
T Consensus       187 ------~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~lRm  260 (392)
T d1gc0a_         187 ------YLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRM  260 (392)
T ss_dssp             ------HHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHHHHH
T ss_pred             ------cccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHHHHH
Confidence                  1222233446766  56799987 5 7778888888777654321  1111223467777776666654311  


Q ss_pred             hHH------HHHHHhCCCCccee------------------cccceeEEEEecCC---hHHHHHHHH--HCCceee----
Q 013008          365 PAF------LASKLARNPHVKDV------------------RGLGLIIGIEFDVS---ATPVVDACR--DSGLLVL----  411 (451)
Q Consensus       365 ~~~------~~~~~~~~~~~~~v------------------~g~G~~~~~~~~~~---~~~~~~~l~--~~Gv~~~----  411 (451)
                      +..      +.++++.+|.+..|                  .+.|.++.|++...   ..+|++.|.  ..+.-+.    
T Consensus       261 ~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~~~a~SlGg~eS  340 (392)
T d1gc0a_         261 DRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAES  340 (392)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSC
T ss_pred             HHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcceEeeccCCcCh
Confidence            111      11155666655443                  33467788888422   233444332  1111111    


Q ss_pred             ----ec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          412 ----TA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       412 ----~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                          |.               | ..+.+|+++.+    |+.+.+++.|+++|+.
T Consensus       341 Li~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         341 LAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL----EDIDDLLADVQQALKA  390 (392)
T ss_dssp             EEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             hhcCccccccccCCHHHHHHcCCCcCeEEEEeee----CCHHHHHHHHHHHHHh
Confidence                10               1 13578997665    5677777777777764

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=5.2e-15  Score=142.55  Aligned_cols=279  Identities=16%  Similarity=0.176  Sum_probs=181.5

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .|....++....|+++|+++.+.+.++.++||..|+..++..+.           ++++.||+.+..|.|......... 
T Consensus        43 ~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~-----------~~gd~vv~~~~~yg~t~~~~~~~~-  110 (384)
T d1cs1a_          43 DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-----------KPGDLLVAPHDCYGGSYRLFDSLA-  110 (384)
T ss_dssp             SBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHHH-
T ss_pred             cccCCCCHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhcc-----------cccceecccccccchhhhhhhhhh-
Confidence            34566788899999999999999999999999999999988655           268999999999866543222111 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                              ......+.+++..|.+.+++.+.+ ++++|++|++.++...++.    +++|+++|+++|+++|+|......
T Consensus       111 --------~~~g~~~~~~d~~d~~~~~~~~~~-~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~atP  177 (384)
T d1cs1a_         111 --------KRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSP  177 (384)
T ss_dssp             --------TTTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             --------cccccccccccCCCHHHHHhhccc-cccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEeccccCc
Confidence                    011234556777899999998864 6789999998887776676    999999999999999999997421


Q ss_pred             CcccccccccccCCCccee--eecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h
Q 013008          293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P  365 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~  365 (451)
                            ..+.-+....||+  +.+|.++| | .-.|+++++ +++.+.+...........+|..+..++..|+.+.-  +
T Consensus       178 ------~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~lRm~  251 (384)
T d1cs1a_         178 ------ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRME  251 (384)
T ss_dssp             ------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHHH
T ss_pred             ------ccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchhHHHHH
Confidence                  1222223346666  56799987 5 666777774 55555543221111223567776666655553310  1


Q ss_pred             HH------HHHHHhCCCCccee------------------cccceeEEEEecCChHHHHHHHHHC-Cce-----------
Q 013008          366 AF------LASKLARNPHVKDV------------------RGLGLIIGIEFDVSATPVVDACRDS-GLL-----------  409 (451)
Q Consensus       366 ~~------~~~~~~~~~~~~~v------------------~g~G~~~~~~~~~~~~~~~~~l~~~-Gv~-----------  409 (451)
                      ..      +.++++.+|.+..|                  .|.|.++.+++........ ++.++ .++           
T Consensus       252 ~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~-~f~~~L~l~~~a~SlGg~eS  330 (384)
T d1cs1a_         252 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLR-RFLGGLSLFTLAESLGGVES  330 (384)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHH-HHHHTCSSSEEBSCCCSSSC
T ss_pred             HHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHH-HHHHhCCcceeccccCCccc
Confidence            11      11155666655443                  3457788888854333222 23232 111           


Q ss_pred             --eeec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          410 --VLTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       410 --~~~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                        ..|.               | .++.+|+++.+    |+++.+++.|+++|+.++
T Consensus       331 Li~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----Ed~eDLi~Dl~~AL~aa~  382 (384)
T d1cs1a_         331 LISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFRAAN  382 (384)
T ss_dssp             EEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHT
T ss_pred             eeccccccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHHHhc
Confidence              1111               0 13568997654    667778888888887664

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=2.1e-14  Score=139.63  Aligned_cols=313  Identities=14%  Similarity=0.112  Sum_probs=176.6

Q ss_pred             CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC------HHHHHHHHHHhhccC--CCeEEecCCHHHHHH
Q 013008           98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS------IPQIELAKRLVACSF--ADRVFFSNTGTEANE  169 (451)
Q Consensus        98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~  169 (451)
                      |-|+|..+      .+..++.|.+++.+.+++....+...+.      ....+..++++++++  .++|+|++++|+++.
T Consensus         2 ~iyld~a~------~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~   75 (376)
T d1eg5a_           2 RVYFDNNA------TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESIN   75 (376)
T ss_dssp             CEECBTTT------CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHH
T ss_pred             EEEEECcc------cccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence            34778654      3457899999999988763211111111      113345667888887  679999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc---CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC
Q 013008          170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT---SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK  246 (451)
Q Consensus       170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  246 (451)
                      .+++.......       .+++.|+ ....+|+.........   +....   ..|......    -|++++++++.+ +
T Consensus        76 ~~~~~~~~~~~-------~~g~~v~-~~~~~~~~~~~~~~~~~~~g~~v~---~vp~~~~~~----id~~~l~~~i~~-~  139 (376)
T d1eg5a_          76 WILKTVAETFE-------KRKRTII-TTPIEHKAVLETMKYLSMKGFKVK---YVPVDSRGV----VKLEELEKLVDE-D  139 (376)
T ss_dssp             HHHHHHHHHTT-------TTCCEEE-ECTTSCHHHHHHHHHHHHTTCEEE---ECCBCTTSC----BCHHHHHHHCCT-T
T ss_pred             hhhhccccccc-------ccCcccc-cccccchhhHHHHHHHHhcCCEEE---EEcCCCCCe----ECHHHHHHhcCC-C
Confidence            98876543221       1344444 4445554443332211   11110   111111111    178999999975 7


Q ss_pred             eEEEEEccccCCCCccccCHHHHHHHHHHHHHh--CCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcc
Q 013008          247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLP  322 (451)
Q Consensus       247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~  322 (451)
                      +++|++..+++.+|.+.+    ++++.++|+++  ++++++|.+|. +|...    .+.....+|+++  ..|.+|+ -.
T Consensus       140 t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~~----~d~~~~~~D~~~~s~~K~~gp-~G  209 (376)
T d1eg5a_         140 TFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP----FSLEKLEVDYASFSAHKFHGP-KG  209 (376)
T ss_dssp             EEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC----CCCTTTCCSEEEEEGGGGTSC-TT
T ss_pred             ceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-ccccc----ccccccCccceecccceeecC-CC
Confidence            899999999999998888    88999988666  99999999985 43221    222233467664  5598753 23


Q ss_pred             cccccccHHHHhhccCCCccC-------CCCCcHHHHHHHHHHHHHhcC-h-HH-------HHHH---HhCCCC--cc-e
Q 013008          323 IGAALVTEKVASAINYGDHGS-------TFAGSPLVCNAAIAVLDKISN-P-AF-------LASK---LARNPH--VK-D  380 (451)
Q Consensus       323 iG~v~~~~~i~~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~-~-~~-------~~~~---~~~~~~--~~-~  380 (451)
                      .|++..+++.  .+++...++       ....+......+.+..+.... . ..       ...+   +.....  +. .
T Consensus       210 ~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  287 (376)
T d1eg5a_         210 VGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPL  287 (376)
T ss_dssp             CEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCT
T ss_pred             ceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccccccc
Confidence            3444444432  222221111       111233333333333332211 0 00       0001   111111  10 0


Q ss_pred             ecccceeEEEEe-cCChHHHHHHHHHCCceeeecC-----------------C-----CCEEEEeCCCCCCHHHHHHHHH
Q 013008          381 VRGLGLIIGIEF-DVSATPVVDACRDSGLLVLTAG-----------------K-----GNVVRLVPPLIISEQELDQAVE  437 (451)
Q Consensus       381 v~g~G~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~~-----------------~-----~~~iri~~~~~~t~e~i~~~l~  437 (451)
                      .........+.+ ...+..+...|.++||.++++.                 -     ++.+|+++..-.|+||||++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~  367 (376)
T d1eg5a_         288 EISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLK  367 (376)
T ss_dssp             TSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHH
T ss_pred             cccccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence            111112233333 3567788888888999876431                 0     1359999999999999999999


Q ss_pred             HHHHHHH
Q 013008          438 ILCKTLP  444 (451)
Q Consensus       438 ~l~~~l~  444 (451)
                      .|+++++
T Consensus       368 ~L~~iv~  374 (376)
T d1eg5a_         368 KIEEILS  374 (376)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999886

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.66  E-value=1.2e-14  Score=140.40  Aligned_cols=232  Identities=17%  Similarity=0.167  Sum_probs=161.4

Q ss_pred             ccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc
Q 013008          131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL  210 (451)
Q Consensus       131 ~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~  210 (451)
                      ++.|....++....|+++|+++.+.+..+.++||..|+..++..+.           +++|+||+.+..|.+........
T Consensus        54 ~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll-----------~~Gd~vi~~~~~Yg~t~~~~~~~  122 (397)
T d1y4ia1          54 GYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-----------QQGDHIVSASAIYGCTHAFLSHS  122 (397)
T ss_dssp             SSCCCTTSCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSSCHHHHHHHHTH
T ss_pred             CceeeCCCCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhcc-----------CCCCeeeeecccccccchhhhcc
Confidence            3445667788899999999999999999999999999999987655           27999999999997764332111


Q ss_pred             cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008          211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC  290 (451)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  290 (451)
                               +....-.+.+++..|.+.+++++++ ++++|++|.+-++...++.    +++|+++|+++|+++|+|....
T Consensus       123 ---------l~~~Gi~~~~vd~~d~~~~~~~i~~-~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~a  188 (397)
T d1y4ia1         123 ---------MPKFGINVRFVDAGKPEEIRAAMRP-ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFM  188 (397)
T ss_dssp             ---------HHHTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred             ---------cCCCceEeeccCCCCHHHHHHhcCC-CCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCccc
Confidence                     1122235667888899999999964 7999999998777766666    9999999999999999999874


Q ss_pred             CCCcccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcC
Q 013008          291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN  364 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~  364 (451)
                      ..      ..+.-+....|++  ++.|.++| + .-.|+++++++.+...+..  .....-..+|..+..++..|+.+.-
T Consensus       189 tP------~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~l  262 (397)
T d1y4ia1         189 SP------YCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGI  262 (397)
T ss_dssp             CT------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHHH
T ss_pred             Cc------ccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHHH
Confidence            21      1222233346666  56799987 4 7778888888766543211  1111223467777766666553310


Q ss_pred             --hHHH------HHHHhCCCCccee------------------cccceeEEEEec
Q 013008          365 --PAFL------ASKLARNPHVKDV------------------RGLGLIIGIEFD  393 (451)
Q Consensus       365 --~~~~------~~~~~~~~~~~~v------------------~g~G~~~~~~~~  393 (451)
                        +...      .++++.+|.+..|                  .+.|.++.|++.
T Consensus       263 Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~  317 (397)
T d1y4ia1         263 RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA  317 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEec
Confidence              1111      1156677755543                  345778888884

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=1e-15  Score=147.53  Aligned_cols=197  Identities=19%  Similarity=0.193  Sum_probs=137.9

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .+....++....|+++|+++.+.+.++.++||..|+.+++.+++            ++++||+.++.|.+.... +... 
T Consensus        42 ~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisall~ll~------------~Gd~vv~~~~~Yg~t~~l-~~~~-  107 (380)
T d1ibja_          42 DYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLIK------------NGEEIVAGDDVYGGSDRL-LSQV-  107 (380)
T ss_dssp             SBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTSC------------TTCEEEEESSCCHHHHHH-HHHT-
T ss_pred             eeeCCCChHHHHHHHHHHHHcCCceEEehhhHHHHHHHHHHhhC------------CCCEEEEEecccccccch-hhhh-
Confidence            35666788899999999999999999999999999864332222            689999999988554322 2111 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL  292 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~  292 (451)
                             +......+.+++.+|++.+++++++ ++++|++|.+.++...++.    +++|+++|+++|+++|+|..+.+.
T Consensus       108 -------~~~~gi~~~~~d~~~~~~~~~ai~~-~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~atP  175 (380)
T d1ibja_         108 -------VPRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMSP  175 (380)
T ss_dssp             -------SGGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTCT
T ss_pred             -------hccccccccccCcchHHHHHHHhcc-CccEEEecccccccccccc----HHHHHHHHHHcCCeEEeecccccc
Confidence                   1122234567787899999999965 7899999999888877777    999999999999999999997532


Q ss_pred             CcccccccccccCCCccee--eecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHH
Q 013008          293 GRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDK  361 (451)
Q Consensus       293 gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~  361 (451)
                            ..+.-+....|++  ++.|.++| | .-.|+++.+ +++.+.+........-..+|..+......|+.
T Consensus       176 ------~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T  243 (380)
T d1ibja_         176 ------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT  243 (380)
T ss_dssp             ------TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT
T ss_pred             ------ccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh
Confidence                  1222233346766  56799987 5 666776655 56666554322112223467777666666553

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=4e-15  Score=143.72  Aligned_cols=275  Identities=11%  Similarity=0.092  Sum_probs=168.3

Q ss_pred             HHHHHHHHhhccCC--Ce--EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCc
Q 013008          142 QIELAKRLVACSFA--DR--VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHY  216 (451)
Q Consensus       142 ~~~l~~~l~~~~~~--e~--v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~  216 (451)
                      .++..+.|+++++.  +.  ++++.|||+|++.++..+..           +++++++....+++......... .....
T Consensus        35 ~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (361)
T d1m32a_          35 VEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG-----------PQDKVLIVSNGAYGARMVEMAGLMGIAHH  103 (361)
T ss_dssp             HHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC-----------TTCCEEEEESSHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh-----------hccccceeeehhhhhhHHHHhhhhhcccc
Confidence            56788888888872  33  77888999999998875431           45667776666555433322211 11100


Q ss_pred             CCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc
Q 013008          217 RSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG  296 (451)
Q Consensus       217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G  296 (451)
                      .   .....+..  +..+.+.+.... ..++..+.+..+.+.+|.+.+    +++|.++|++||+++++|-+|+ +|.. 
T Consensus       104 ~---~~~~~~~~--~~~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~-  171 (361)
T d1m32a_         104 A---YDCGEVAR--PDVQAIDAILNA-DPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGI-  171 (361)
T ss_dssp             E---EECCTTSC--CCHHHHHHHHHH-CTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTS-
T ss_pred             c---ccccccCC--ccchhhHHHHHh-ccCccceEEEeeecccccchh----hhhhhhhhcccceeeEeecccc-cCcc-
Confidence            0   00000000  000223333333 346788888888888898888    9999999999999999999996 4322 


Q ss_pred             ccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCCc------------------cCCCCCcHHHHHHHH
Q 013008          297 YLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGDH------------------GSTFAGSPLVCNAAI  356 (451)
Q Consensus       297 ~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~~------------------~~t~~~~~~~~aaa~  356 (451)
                         .++......|+.++|  |.++|...+|++..+++..+...+...                  ...++.+...+.+..
T Consensus       172 ---~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~  248 (361)
T d1m32a_         172 ---PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFA  248 (361)
T ss_dssp             ---CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHH
T ss_pred             ---cccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHH
Confidence               223334568888887  778654557888889988877654311                  122334555666666


Q ss_pred             HHHHHhcChHHHHH--------------HHhCCCCc----ceecccceeEEEEec----CChHHHHHHHHHCCceeeecC
Q 013008          357 AVLDKISNPAFLAS--------------KLARNPHV----KDVRGLGLIIGIEFD----VSATPVVDACRDSGLLVLTAG  414 (451)
Q Consensus       357 aal~~~~~~~~~~~--------------~~~~~~~~----~~v~g~G~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~~  414 (451)
                      .+++.+..+...+.              .++..+..    ...+. ..+..+.+.    .+..++.+.|.++|+.+.+++
T Consensus       249 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs-~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~  327 (361)
T d1m32a_         249 QALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHS-PIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGK  327 (361)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC-SSEEEEECCCCTTCCHHHHHHHHHHTTEECEECC
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcC-CcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCC
Confidence            66654433221111              12222211    11122 233445442    356789999999999988764


Q ss_pred             C--CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          415 K--GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       415 ~--~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      .  ++.+|++..-.++++||++++++|+++|
T Consensus       328 ~~~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         328 VSQSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             CSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             cCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            3  5789998533469999999999999875

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.2e-14  Score=137.58  Aligned_cols=279  Identities=13%  Similarity=0.079  Sum_probs=179.4

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .|....++....|+++|+++.+.+.++.++||..|+..++..+.           ++++.||+.+..|.|........  
T Consensus        51 ~Y~R~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~-----------~~Gd~iv~~~~~Yg~T~~l~~~~--  117 (391)
T d1cl1a_          51 FYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFI-----------EQGDHVLMTNTAYEPSQDFCSKI--  117 (391)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTSCHHHHHHHHHT--
T ss_pred             EeECCCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhccc-----------CCCCeEEEecccccchhhhhhhc--
Confidence            45667788899999999999999999999999999999988665           26899999999886543222111  


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHh--CCEEEEecccc
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQC  290 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~t  290 (451)
                             +....-.+.+++..|.+++++++++ ++++|++|.+.++...++.    +++++++|+++  |+++|+|....
T Consensus       118 -------l~~~Gi~~~~~d~~d~~~~~~~i~~-~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~a  185 (391)
T d1cl1a_         118 -------LSKLGVTTSWFDPLIGADIVKHLQP-NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWA  185 (391)
T ss_dssp             -------GGGGTCEEEEECTTCGGGGGGTCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTT
T ss_pred             -------ccccccccccccCcccccccccccc-ccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEecccc
Confidence                   1122234567777789999998864 6899999998777766666    99999999775  99999999985


Q ss_pred             CCCcccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--
Q 013008          291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--  364 (451)
Q Consensus       291 g~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--  364 (451)
                      ..      ..+.-+....|++  +.+|.++| | .-.|.++.++++.+.+........-..+|..+...+..|+.+.-  
T Consensus       186 tP------~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL~lR~  259 (391)
T d1cl1a_         186 AG------VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRL  259 (391)
T ss_dssp             TT------TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTHHHHH
T ss_pred             ch------hhhcccccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhHHHHH
Confidence            32      1222223346666  56799987 5 66777887777666553221111122457766665555543210  


Q ss_pred             hHH------HHHHHhCCCCccee------------------cccceeEEEEecC--ChHHHHHHHH-----HCCceee--
Q 013008          365 PAF------LASKLARNPHVKDV------------------RGLGLIIGIEFDV--SATPVVDACR-----DSGLLVL--  411 (451)
Q Consensus       365 ~~~------~~~~~~~~~~~~~v------------------~g~G~~~~~~~~~--~~~~~~~~l~-----~~Gv~~~--  411 (451)
                      +..      +.++++.+|.+..|                  +|.|.++.|.+..  ...++.+.+-     ..+.-+.  
T Consensus       260 ~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L~l~~~a~SlG~~  339 (391)
T d1cl1a_         260 RQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGY  339 (391)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCBCCSCCCSS
T ss_pred             HHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcCCcceEeeCCCCC
Confidence            111      11156677755544                  3445567777742  3333333221     1122111  


Q ss_pred             ------ec-------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          412 ------TA-------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       412 ------~~-------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                            |.             + .++.+|+++.+    |+++.+++.|+++|+++
T Consensus       340 ~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         340 ESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI  390 (391)
T ss_dssp             SCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred             ccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence                  10             0 13568997664    67778888888888764

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.61  E-value=2.3e-14  Score=142.12  Aligned_cols=279  Identities=9%  Similarity=-0.016  Sum_probs=158.5

Q ss_pred             HHHHHhhccC-CCeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcC
Q 013008          145 LAKRLVACSF-ADRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP  222 (451)
Q Consensus       145 l~~~l~~~~~-~e~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  222 (451)
                      +...+++.++ .....+ ..++++++.+++.+.+...         +++.||+. ..-|.+...++...+.........+
T Consensus       118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~---------~~~~vi~s-~~~H~s~~k~~~~~g~~~~~v~~~~  187 (434)
T d2z67a1         118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY---------GSNVVIYP-YASHKSPIKAVSFVGMNMRLVETVL  187 (434)
T ss_dssp             HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH---------CCCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred             HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhh---------cCceEEEe-ccCCHHHHHHHHHhCCcceEEEeec
Confidence            4445566666 334444 4555566666666655443         35556555 5557766666554432211100000


Q ss_pred             CCCCeeEeeCCCHHHHHHhcC----CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc
Q 013008          223 VMPGVNFVEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL  298 (451)
Q Consensus       223 ~~~~~~~~~~~d~~~le~~l~----~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~  298 (451)
                      . ....   ..|+++|++.|+    .+.+.+|++...+..+|.+.+    +++|.++|++||+++|+|++|.++......
T Consensus       188 ~-~~~~---~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~  259 (434)
T d2z67a1         188 D-GDRV---YVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLE  259 (434)
T ss_dssp             E-TTEE---ECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred             C-CCcc---CCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccc
Confidence            0 0000   138999999996    346778888877777787666    999999999999999999999643111111


Q ss_pred             ccccccCCCcceeeec--ccccCCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----
Q 013008          299 WAHEHYGIFPDIMTLA--KPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----  370 (451)
Q Consensus       299 ~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----  370 (451)
                      ..........|+++++  |.++++...|++.. ++++++.+.......+...+...+.+++..+......+..++     
T Consensus       260 ~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a  339 (434)
T d2z67a1         260 KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSK  339 (434)
T ss_dssp             HHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            1111123457877765  98876555566654 467777776544444443333333333333321111111111     


Q ss_pred             -----HHhCCC---Cccee-cccceeEEEEecCChHHHHHHHHHCCceeeec--------------CCCCEEEEeCCCCC
Q 013008          371 -----KLARNP---HVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--------------GKGNVVRLVPPLII  427 (451)
Q Consensus       371 -----~~~~~~---~~~~v-~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------------~~~~~iri~~~~~~  427 (451)
                           .+++++   ..... ......+.+.++.+..++...|.++||.....              ...+.+|+..+..+
T Consensus       340 ~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~  419 (434)
T d2z67a1         340 KLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGV  419 (434)
T ss_dssp             HHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTC
T ss_pred             HHHHHHHHHhhhhcCceecCCCCCceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCC
Confidence                 111110   01001 11122333344567788999999999854211              11367999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 013008          428 SEQELDQAVEILCK  441 (451)
Q Consensus       428 t~e~i~~~l~~l~~  441 (451)
                      |+||||+++++|++
T Consensus       420 T~edID~~i~~L~k  433 (434)
T d2z67a1         420 RTEDIVNSVSKLEK  433 (434)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999999986

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=9e-15  Score=145.53  Aligned_cols=290  Identities=10%  Similarity=-0.017  Sum_probs=163.5

Q ss_pred             HHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCC
Q 013008          142 QIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS  218 (451)
Q Consensus       142 ~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~  218 (451)
                      ..++.++++++++   .....++++|+++...++.+++...+       ++++.||+ +..-|.+...++...|......
T Consensus        96 e~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~-------~~~~~vi~-~~~~H~s~~~a~~~~g~~~~~v  167 (445)
T d3bc8a1          96 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR-------PKAKYIIW-PRIDQKSCFKSMVTAGFEPVVI  167 (445)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC-------TTCCEEEE-ECCCCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhC-------CCCCEEEE-cCcccHHHHHHHHHcCCeeEEE
Confidence            3456667777776   34678888888766665555443322       13455555 4455877777666554322110


Q ss_pred             CCcCCCCCeeEeeCCCHHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008          219 PFEPVMPGVNFVEYGNIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT  295 (451)
Q Consensus       219 ~~~~~~~~~~~~~~~d~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~  295 (451)
                      ...+......    -|+++|+++|+   ..++++|++...+...|.+.+    +++|.++|++||++||+|+++.++-..
T Consensus       168 ~~~~~~~~~~----id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~  239 (445)
T d3bc8a1         168 ENVLEGDELR----TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSK  239 (445)
T ss_dssp             CCEEETTEEE----CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred             EeeccCcccc----cCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhhh
Confidence            0001011111    18999999886   345788888877777787776    999999999999999999999643111


Q ss_pred             -cc--cccccccCCCcceeeec--ccccCCccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChH---
Q 013008          296 -GY--LWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA---  366 (451)
Q Consensus       296 -G~--~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~---  366 (451)
                       ..  .+.....  ..|+++++  |.++++...|+++.+ +++.+.+.............+.+.+.+..+..-.-..   
T Consensus       240 ~~~~~~~~~~~~--~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  317 (445)
T d3bc8a1         240 CMHLIQQGARVG--RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLK  317 (445)
T ss_dssp             HHHHHHHHHHHS--CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhccCcC--CcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHH
Confidence             11  1111111  35776665  888766566666664 5666655432222222222233222222221100000   


Q ss_pred             -------HHHH----HHhCCC-CcceecccceeEEEEec-------CChHHHHHHHHHCCceeee---------------
Q 013008          367 -------FLAS----KLARNP-HVKDVRGLGLIIGIEFD-------VSATPVVDACRDSGLLVLT---------------  412 (451)
Q Consensus       367 -------~~~~----~~~~~~-~~~~v~g~G~~~~~~~~-------~~~~~~~~~l~~~Gv~~~~---------------  412 (451)
                             +...    +.+.+. .+...+.......+.+.       ....++...|.+.||....               
T Consensus       318 ~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~  397 (445)
T d3bc8a1         318 ERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTF  397 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhh
Confidence                   0111    222222 12223333444444442       2234677778888773211               


Q ss_pred             --cC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008          413 --AG------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN  449 (451)
Q Consensus       413 --~~------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~  449 (451)
                        .+      ....+|+.++..+|+||||.++++|++++++++..
T Consensus       398 ~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~  442 (445)
T d3bc8a1         398 RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE  442 (445)
T ss_dssp             ETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence              00      02458999999999999999999999999998753

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.56  E-value=5.1e-14  Score=137.22  Aligned_cols=300  Identities=15%  Similarity=0.070  Sum_probs=176.6

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      -+|+|++|+.+..  ..|. ..-..+...+..+.|++.++   .+.++|+.|||+|++.++..+..           +++
T Consensus        28 ~~~~V~~Am~~~~--~~hr-~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~-----------~~~   93 (388)
T d2ch1a1          28 CSKRVLTAMTNTV--LSNF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE-----------EGD   93 (388)
T ss_dssp             CCHHHHHHTTSCC--CCTT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC-----------TTC
T ss_pred             CCHHHHHHhCcCC--CCCC-CHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcc-----------ccc
Confidence            4788888764321  1110 00112235677777888776   34577778899999999987651           467


Q ss_pred             eEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeC---CCHHHHHHhcCCCCeEEEEEccccCCCCccccCHH
Q 013008          192 EFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEY---GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE  267 (451)
Q Consensus       192 ~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~  267 (451)
                      ++++...+.++......... +....          ....++   .+.+..++.+...++.++.+..+.+.+|.+.+   
T Consensus        94 ~vl~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~---  160 (388)
T d2ch1a1          94 RVLIAVNGIWAERAVEMSERYGADVR----------TIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---  160 (388)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEE----------EEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---
T ss_pred             cccccccccccccchhhhhhhccccc----------ccccccccccchhhhhhhhccCCcceeeeeecccccccccc---
Confidence            77777666555432222211 10000          001111   14555555555445677777777777888888   


Q ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCC-----
Q 013008          268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD-----  340 (451)
Q Consensus       268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~-----  340 (451)
                       ++++.++|+++|+++++|-+++ +|  +..  .+......|++++|  |++++.-.+|++..+++..+......     
T Consensus       161 -~~~i~~~~~~~~~~~~vD~~ss-~g--~~p--id~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~  234 (388)
T d2ch1a1         161 -LEGVGQICHQHDCLLIVDAVAS-LC--GVP--FYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKV  234 (388)
T ss_dssp             -CTTHHHHHHHTTCEEEEECTTT-BT--TBC--CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSC
T ss_pred             -hhhhcchhccccceeeeeeeec-cc--ccc--cchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCcccc
Confidence             8899999999999999999996 43  122  22334567888887  55654345667777776555432110     


Q ss_pred             -----------------ccCC-CCCcHHHHHHHHHHHHHhcChHHHHH-------------HHh--CCC-Ccceecc-cc
Q 013008          341 -----------------HGST-FAGSPLVCNAAIAVLDKISNPAFLAS-------------KLA--RNP-HVKDVRG-LG  385 (451)
Q Consensus       341 -----------------~~~t-~~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~--~~~-~~~~v~g-~G  385 (451)
                                       ...+ +..+.....++.++++.+........             ...  ... .+..-.. ..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~  314 (388)
T d2ch1a1         235 FYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLP  314 (388)
T ss_dssp             GGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCT
T ss_pred             ccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCC
Confidence                             1111 23345555566666665432211111             111  111 1111111 13


Q ss_pred             eeEEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEe-CCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          386 LIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLV-PPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       386 ~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~-~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      .+..+.+.  .+..++...|+++ ||.+.++.   .+..+||+ +....|+|+|+.++++|+++|+.+.
T Consensus       315 ~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~  383 (388)
T d2ch1a1         315 TVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  383 (388)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence            34556662  4678898898765 99888753   24689998 5666789999999999999998754

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.56  E-value=4.3e-14  Score=137.12  Aligned_cols=297  Identities=17%  Similarity=0.126  Sum_probs=170.2

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT  191 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~  191 (451)
                      -+|+|++||....  ..|. ..-..+...+..+.|+++++   ...|+|+.||+++++.++..+.           .+++
T Consensus        29 v~~~Vl~am~~~~--~~hr-~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~-----------~~~~   94 (377)
T d1vjoa_          29 AHPSVLQAMNVSP--VGHL-DPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV-----------EPGD   94 (377)
T ss_dssp             CCHHHHHHHSSCC--CCTT-SHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-----------CTTC
T ss_pred             CCHHHHHHhCcCC--CCCC-CHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc-----------cccc
Confidence            4678877764311  1111 11122336777788888876   3478888999999999988654           1577


Q ss_pred             eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC---CCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHH
Q 013008          192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEF  268 (451)
Q Consensus       192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~  268 (451)
                      ++++....+++...............         ....++   .+.+..+......++..|.+..+.+.+|.+.+    
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~----  161 (377)
T d1vjoa_          95 VVLIGVAGYFGNRLVDMAGRYGADVR---------TISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP----  161 (377)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEE---------EEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----
T ss_pred             ccceeeechhhhhhhhhhhhhccccc---------ccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeec----
Confidence            78877766654432222211110000         011111   13444444444335666777777778888888    


Q ss_pred             HHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCC------
Q 013008          269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD------  340 (451)
Q Consensus       269 l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~------  340 (451)
                      ++++.++|+++|+++++|.+++ +|..    ..+......|++++|  |.++|+-.+|++..++..++......      
T Consensus       162 i~~i~~~~~~~g~~~~vDa~~~-~g~~----~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~  236 (377)
T d1vjoa_         162 LEGVGELCREFGTLLLVDTVTS-LGGV----PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANW  236 (377)
T ss_dssp             CTTHHHHHHHHTCEEEEECTTT-TTTS----CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCS
T ss_pred             hhhhhhhhhhccceEEEecchh-hhhh----hhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcce
Confidence            9999999999999999999995 4322    122234456777666  56655455667777877776543211      


Q ss_pred             -------------ccCCC-CCcHHHHHHHHHHHHHhcChH---HHHH----------HHhCCC--Cc--ceecccceeEE
Q 013008          341 -------------HGSTF-AGSPLVCNAAIAVLDKISNPA---FLAS----------KLARNP--HV--KDVRGLGLIIG  389 (451)
Q Consensus       341 -------------~~~t~-~~~~~~~aaa~aal~~~~~~~---~~~~----------~~~~~~--~~--~~v~g~G~~~~  389 (451)
                                   ...+. ..+...+.+..++...+....   ..++          .+....  .+  ...+. ..+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs-~~v~~  315 (377)
T d1vjoa_         237 YLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRL-PTLTT  315 (377)
T ss_dssp             TTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC-SSEEE
T ss_pred             eeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcC-CeEEE
Confidence                         01111 122233333444443332211   1111          111111  11  11122 23344


Q ss_pred             EEe-c-CChHHHHHHHHH-CCceeeecCC---CCEEEEeC-CCCCCHHHHHHHHHHHHHHHH
Q 013008          390 IEF-D-VSATPVVDACRD-SGLLVLTAGK---GNVVRLVP-PLIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       390 ~~~-~-~~~~~~~~~l~~-~Gv~~~~~~~---~~~iri~~-~~~~t~e~i~~~l~~l~~~l~  444 (451)
                      +.+ + .+..++++.|++ .||.+..+..   ++.+|+++ ....|+|||++++++|+++++
T Consensus       316 ~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         316 VCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             EECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            555 2 467889988875 4998876532   46899984 566789999999999999873

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.55  E-value=4.6e-13  Score=133.69  Aligned_cols=292  Identities=12%  Similarity=0.020  Sum_probs=157.3

Q ss_pred             CHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhh-hhccCC-CCc
Q 013008          139 SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA-LALTSK-EHY  216 (451)
Q Consensus       139 ~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~-~~~~~~-~~~  216 (451)
                      .....++++++++.++.++++|+++|+++...|+-.+.  .        .++|+||+.. ..|.+.... ..+.+. +.+
T Consensus        65 ~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~--~--------~~gd~Vi~~~-~~H~Sv~~~~~~l~~~~~~~  133 (462)
T d1c4ka2          65 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSAL--V--------SNGDLVLFDR-NNHKSVYNSALAMAGGRPVY  133 (462)
T ss_dssp             BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHH--C--------CTTCEEEEET-TCCHHHHHHHTTTTCCEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHh--c--------CCCCeEEecc-cchHHHHHHHHHHhcCCcee
Confidence            34578899999999999999999999877666654332  1        1577666665 456665432 223221 111


Q ss_pred             CCCCcCCCC-Cee-EeeC--CCHHHHHHhcC--------CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEE
Q 013008          217 RSPFEPVMP-GVN-FVEY--GNIEATRKLIQ--------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLV  284 (451)
Q Consensus       217 ~~~~~~~~~-~~~-~~~~--~d~~~le~~l~--------~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI  284 (451)
                      ...  ...+ +.. ..+.  -+.+.+++.+.        ..++..+++..+++..|.+.+    +++|.++|++||++|+
T Consensus       134 ~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~  207 (462)
T d1c4ka2         134 LQT--NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIE  207 (462)
T ss_dssp             ECE--EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEE
T ss_pred             eec--ccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEE
Confidence            110  0011 111 1100  02333333221        123445556667777888888    9999999999999999


Q ss_pred             EeccccCCCcccccc--cccccC------CCcceeee--cccccCCccccccc-ccHHHHhhccCC----------CccC
Q 013008          285 FDEVQCGLGRTGYLW--AHEHYG------IFPDIMTL--AKPLAGGLPIGAAL-VTEKVASAINYG----------DHGS  343 (451)
Q Consensus       285 ~DEv~tg~gr~G~~~--~~~~~~------~~pdi~t~--sK~lg~G~~iG~v~-~~~~i~~~~~~~----------~~~~  343 (451)
                      +||+|..........  .....+      ...|++++  .|.+++. ..|.++ .+++........          ....
T Consensus       208 vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~-~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (462)
T d1c4ka2         208 FDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF-SQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFM  286 (462)
T ss_dssp             EECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC-TTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHS
T ss_pred             EechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccc-cceEEEEeccccccccchhhhHHHHHHhhhhcc
Confidence            999985321111111  111111      12477765  5888742 224443 333322211100          1123


Q ss_pred             CCCCcHHHHHHHHHHHHHhcCh---HHHHH-------HH---hCCCCcc-------------------------------
Q 013008          344 TFAGSPLVCNAAIAVLDKISNP---AFLAS-------KL---ARNPHVK-------------------------------  379 (451)
Q Consensus       344 t~~~~~~~~aaa~aal~~~~~~---~~~~~-------~~---~~~~~~~-------------------------------  379 (451)
                      +.+.+...++...++...+..+   ++.++       +.   .+.+...                               
T Consensus       287 t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  366 (462)
T d1c4ka2         287 STSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFE  366 (462)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCC
T ss_pred             cCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccC
Confidence            4445555555555555544321   11111       11   1111000                               


Q ss_pred             ---------eeccccee-----EEEEec-------------CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHH
Q 013008          380 ---------DVRGLGLI-----IGIEFD-------------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQEL  432 (451)
Q Consensus       380 ---------~v~g~G~~-----~~~~~~-------------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i  432 (451)
                               .+.....+     +.+...             ..+..+.+.|.++||.+...+. +.+|+.++..+|+|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~-~~i~~~~s~~~T~edi  445 (462)
T d1c4ka2         367 KGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDL-NSILFLMTPAETPAKM  445 (462)
T ss_dssp             TTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECS-SEEEEECCTTCCHHHH
T ss_pred             CcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCC-CeEEEEecCCCCHHHH
Confidence                     00000000     112110             2356788888899998765555 7899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 013008          433 DQAVEILCKTLPVLDSN  449 (451)
Q Consensus       433 ~~~l~~l~~~l~~~~~~  449 (451)
                      |+++++|.+.-+.+++|
T Consensus       446 d~li~aL~ei~r~~~~~  462 (462)
T d1c4ka2         446 NNLITQLLQLQRLIEED  462 (462)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999988776643

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.54  E-value=6.4e-13  Score=128.42  Aligned_cols=281  Identities=15%  Similarity=0.113  Sum_probs=180.1

Q ss_pred             ccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc
Q 013008          131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL  210 (451)
Q Consensus       131 ~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~  210 (451)
                      ++.|....++....|+++|+++.+.+..+.++||..|+..++....           .+++.|++.+..|.|........
T Consensus        50 ~~~YsR~~nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~-----------~~gd~vv~~~~~yg~t~~~~~~~  118 (394)
T d1e5ea_          50 GYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTIL-----------KAGDHLISDECLYGCTHALFEHA  118 (394)
T ss_dssp             SCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTH
T ss_pred             CceecCCCCHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhc-----------ccccccccccceeehhhHhHHHH
Confidence            3445667888899999999999999999999999999998886554           26889999988886543222111


Q ss_pred             cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHH-HhCCEEEEeccc
Q 013008          211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD-DAGALLVFDEVQ  289 (451)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~  289 (451)
                               +......+.+++..|.+++++.+++ ++++|++|.+.++...++.    ++++.++++ ++|+++|+|...
T Consensus       119 ---------~~~~gi~~~~~d~~d~~~~~~~i~~-~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~  184 (394)
T d1e5ea_         119 ---------LTKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTF  184 (394)
T ss_dssp             ---------HHHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTT
T ss_pred             ---------hhccceeeeccCCCCHHHHHHhhcc-cccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCcc
Confidence                     1122345677888899999999975 6899999988777766666    888887665 578999999997


Q ss_pred             cCCCcccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhc
Q 013008          290 CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKIS  363 (451)
Q Consensus       290 tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~  363 (451)
                      +...      .+.-+....|++  +.+|.++| | .-.|.++++++.....+...  ....-..+|..+...+..|+.+.
T Consensus       185 atP~------~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~  258 (394)
T d1e5ea_         185 CSPM------ITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN  258 (394)
T ss_dssp             TCTT------TCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH
T ss_pred             cCcc------cCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhHH
Confidence            5321      222233345776  56799987 5 77788888877665443211  11122346777666665555331


Q ss_pred             C--hHHH------HHHHhCCCCccee------------------cccceeEEEEecCChHHHHHHHHHC-Cce-------
Q 013008          364 N--PAFL------ASKLARNPHVKDV------------------RGLGLIIGIEFDVSATPVVDACRDS-GLL-------  409 (451)
Q Consensus       364 ~--~~~~------~~~~~~~~~~~~v------------------~g~G~~~~~~~~~~~~~~~~~l~~~-Gv~-------  409 (451)
                      -  +...      .++++.+|.+..|                  ++.|.++.|++... .+-+.++.+. .++       
T Consensus       259 lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~-~~~a~~f~~~l~l~~~a~SlG  337 (394)
T d1e5ea_         259 IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG-FEGAKKLLDNLKLITLAVSLG  337 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHTCSSSEESSCCC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCC-HHHHHHHHHhCCccceeeccC
Confidence            0  1111      1156677765544                  24477788877422 2222333332 111       


Q ss_pred             ------eeec---------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          410 ------VLTA---------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       410 ------~~~~---------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                            ..|.               | ..+.+|+++.+    |+++.+++.|+++|+.+.
T Consensus       338 g~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl----Ed~eDLi~Dl~qAl~~l~  393 (394)
T d1e5ea_         338 GCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALL  393 (394)
T ss_dssp             SSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred             CccceeECccccccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHHhh
Confidence                  1121               0 12578997665    567777777877777653

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.53  E-value=7.3e-13  Score=128.36  Aligned_cols=292  Identities=14%  Similarity=0.084  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      ++-.+++.+.++.....    .-+...+|++++++.++.+.+++++||+.|+..|++++.  .        +++|+||+.
T Consensus        12 ~~~~~~~~~~~~~~~~~----~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~--~--------~~gdeVi~~   77 (376)
T d1mdoa_          12 AEELAAVKTVLDSGWIT----TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG--I--------GEGDEVITP   77 (376)
T ss_dssp             HHHHHHHHHHHHHTCCS----SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEEE
T ss_pred             HHHHHHHHHHHhcCCCc----CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhC--C--------CCCCEEEEe
Confidence            55567888888764221    234577899999999999999999999999999998652  1        268999999


Q ss_pred             cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC  276 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~  276 (451)
                      ..+|+.........+..+.+.    ...++...   -|++.|++++.+ ++++|++....|.   ..+    +++|.++|
T Consensus        78 ~~~~~~~~~ai~~~g~~pv~~----d~~~~~~~---~d~~~l~~~i~~-~tkaIi~~h~~G~---~~~----~~~i~~i~  142 (376)
T d1mdoa_          78 SMTWVSTLNMIVLLGANPVMV----DVDRDTLM---VTPEHIEAAITP-QTKAIIPVHYAGA---PAD----LDAIYALG  142 (376)
T ss_dssp             SSSCHHHHHHHHHTTCEEEEE----CBCTTTCC---BCHHHHHHHCCT-TEEEECCBCGGGC---CCC----HHHHHHHH
T ss_pred             cccccccccchhccccceeee----cccccccC---CCHHHHHHhcCC-CCeEEEEeCCCCC---ccc----hhHHHHHH
Confidence            988876654444443333221    11111111   289999999976 5777777655543   344    89999999


Q ss_pred             HHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccCCccccccccc-HHHHhhccCC--------------
Q 013008          277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT-EKVASAINYG--------------  339 (451)
Q Consensus       277 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~-~~i~~~~~~~--------------  339 (451)
                      ++||++||.|.+|+ +|..=.......+|  ..+.+|  .|.++.| ..|+++.+ +++.+.++..              
T Consensus       143 ~~~~i~vIeD~a~a-~g~~~~~~~~g~~g--~~~~Sf~~~K~l~~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~  218 (376)
T d1mdoa_         143 ERYGIPVIEDAAHA-TGTSYKGRHIGARG--TAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQS  218 (376)
T ss_dssp             HHHTCCBCEECTTC-TTCEETTEETTSSS--EEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC------
T ss_pred             HhcCceEEeccchh-ccCeeCCeeccccc--CccccCCCcCCCCCC-CCCEEEEechhHHHHHHhhcccCCccccccccc
Confidence            99999999999996 54220100111122  123334  3888643 23666664 5565544211              


Q ss_pred             ----------CccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceeccc-----c-eeEEEEec
Q 013008          340 ----------DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRGL-----G-LIIGIEFD  393 (451)
Q Consensus       340 ----------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g~-----G-~~~~~~~~  393 (451)
                                ..+..+..+.+.++.+..-|+.++  ++.++          .++..+.+......     . ..+.+.++
T Consensus       219 ~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~--~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (376)
T d1mdoa_         219 GGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVD  296 (376)
T ss_dssp             -----CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECC
T ss_pred             ccccccccchhcccccccchhhhhhhhhhhhhhh--HHHHHHhhhhhhhhhhcccccccccccccccccccccccccccc
Confidence                      012334455677777776666442  22222          33344422111110     0 11112221


Q ss_pred             -----CChHHHHHHHHHCCceeeec----------------CC--------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          394 -----VSATPVVDACRDSGLLVLTA----------------GK--------GNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       394 -----~~~~~~~~~l~~~Gv~~~~~----------------~~--------~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                           ....++.+.|.++||-+.+.                +.        .+.+.+-....+|++|++++++.|++++
T Consensus       297 ~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         297 EARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             HHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                 23457999999999876521                00        1346665556779999999999998865

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=1.1e-13  Score=134.50  Aligned_cols=170  Identities=21%  Similarity=0.160  Sum_probs=122.1

Q ss_pred             ccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc
Q 013008          131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL  210 (451)
Q Consensus       131 ~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~  210 (451)
                      ++.|....++....|+++|+++.+.+.++.++||..|+..++..+.           +++++||+.+..|+|........
T Consensus        49 ~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l~-----------~~gd~il~~~~~Yg~t~~l~~~~  117 (421)
T d2ctza1          49 GNIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-----------QAGDNIVSTPNLYGGTFNQFKVT  117 (421)
T ss_dssp             GGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSCCCHHHHHHHHTH
T ss_pred             CceecCCCCHHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhhc-----------ccccceeecCCcCCchhHHHHHH
Confidence            3445667788899999999999999999999999999998887665           26899999999998764332211


Q ss_pred             cCCCCcCCCCcCCCCCeeEeeCCC-HHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008          211 TSKEHYRSPFEPVMPGVNFVEYGN-IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ  289 (451)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~  289 (451)
                      .         ....-.+.+++..| .+..+..++ .++++|++|.+.++...++.    +++|+++|+++|+++|+|...
T Consensus       118 ~---------~~~gi~~~~~d~~~~~~~~~~~~~-~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~  183 (421)
T d2ctza1         118 L---------KRLGIEVRFTSREERPEEFLALTD-EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTF  183 (421)
T ss_dssp             H---------HHTTCEEEECCTTCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGG
T ss_pred             H---------hhccccceecccccCcchhccccC-CCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEecccc
Confidence            1         11122344555444 345555554 58999999999888777776    999999999999999999997


Q ss_pred             cCCCcccccccccccCCCccee--eecccccC-C-cccccccccH
Q 013008          290 CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTE  330 (451)
Q Consensus       290 tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~  330 (451)
                      ..    . +..+.-+....|++  +.+|.++| | .-.|.|+.++
T Consensus       184 a~----t-P~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~  223 (421)
T d2ctza1         184 GM----G-GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG  223 (421)
T ss_dssp             GG----G-GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             cc----c-ceeccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence            41    1 11222233446776  56799987 5 6667776543

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.53  E-value=7.1e-14  Score=132.43  Aligned_cols=268  Identities=15%  Similarity=0.145  Sum_probs=171.0

Q ss_pred             HHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC
Q 013008          144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV  223 (451)
Q Consensus       144 ~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  223 (451)
                      .|+++|+++.+.+.++.++||..|+..++..+.           +++|+||+.+..|+|........         +...
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll-----------~~Gd~iv~~~~~Yg~t~~~~~~~---------l~~~   61 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFL-----------KAGDHLISDDCLYGCTHALFEHQ---------LRKF   61 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTH---------HHHT
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHH---------HHhc
Confidence            588999999999999999999999999887554           26899999999997654332111         1122


Q ss_pred             CCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHH-HHhCCEEEEeccccCCCccccccccc
Q 013008          224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTGYLWAHE  302 (451)
Q Consensus       224 ~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tg~gr~G~~~~~~  302 (451)
                      ...+.+++..|++.+++++++ +++.|++|.+.++...++.    ++.+++++ +++|+++|+|......      ..+.
T Consensus        62 gi~~~~~d~~d~~~~~~~i~~-~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp------~~~~  130 (331)
T d1pffa_          62 GVEVDFIDMAVPGNIEKHLKP-NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP------ILTN  130 (331)
T ss_dssp             TCEEEEECTTSTTHHHHTCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH------HHCC
T ss_pred             CeEEEEecccchhhHhhhccc-ccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc------cccc
Confidence            345678888899999999975 6889999988777766666    88888875 6789999999987532      1233


Q ss_pred             ccCCCccee--eecccccC-C-cccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----
Q 013008          303 HYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----  370 (451)
Q Consensus       303 ~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----  370 (451)
                      -.....|++  +.+|.++| | .-.|+++++++........  .....-..+|..+...+..|+.+.-  +...++    
T Consensus       131 pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~l  210 (331)
T d1pffa_         131 PLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKV  210 (331)
T ss_dssp             GGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333346776  56799987 5 6778888886655443211  1111223467777777776665421  111111    


Q ss_pred             --HHhCCCCccee------------------cccceeEEEEecC--ChHHHHHHHH--HCCcee--------eec-----
Q 013008          371 --KLARNPHVKDV------------------RGLGLIIGIEFDV--SATPVVDACR--DSGLLV--------LTA-----  413 (451)
Q Consensus       371 --~~~~~~~~~~v------------------~g~G~~~~~~~~~--~~~~~~~~l~--~~Gv~~--------~~~-----  413 (451)
                        +++.+|.+..|                  .+.|.++.|+++.  .+.+|++.|.  ..+.-+        .|.     
T Consensus       211 A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~  290 (331)
T d1pffa_         211 AEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHA  290 (331)
T ss_dssp             HHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTST
T ss_pred             HHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcceecccCCCCceeEeCccccccc
Confidence              55566655443                  3457788888852  1222333221  111111        110     


Q ss_pred             ----------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          414 ----------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       414 ----------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                                | .++.+|+++.+    |+.+.+++.|+++|+.+
T Consensus       291 ~~~~e~~~~~Gi~~~liRlsvGl----E~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         291 GVPKEEREAAGLTDNLIRLSVGC----ENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             TSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHhcCCCcCeEEEEeee----CCHHHHHHHHHHHHHHh
Confidence                      1 13578997665    55666777777777653

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.6e-13  Score=131.95  Aligned_cols=268  Identities=11%  Similarity=0.095  Sum_probs=165.6

Q ss_pred             CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc-cCCCCcCCCCcCCCCCeeEeeCC
Q 013008          155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMPGVNFVEYG  233 (451)
Q Consensus       155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  233 (451)
                      .+.++|+.|||+|++.+++.+...+        .++++|++.+.++++........ .+......  .....+..    .
T Consensus        57 ~~~i~~t~sgT~a~~~~~~~l~~~~--------~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~  122 (382)
T d2bkwa1          57 SQPFVLAGSGTLGWDIFASNFILSK--------APNKNVLVVSTGTFSDRFADCLRSYGAQVDVV--RPLKIGES----V  122 (382)
T ss_dssp             CEEEEEESCTTHHHHHHHHHHSCTT--------CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEE--CCSSTTSC----C
T ss_pred             CeEEEEeCcHHHHHHHHHHHHHHhc--------CCCCceEEEEechhhhhhhhhccccccccccc--cccCCCCc----c
Confidence            4679999999999999998654211        25889999988777654332221 11110000  00000000    2


Q ss_pred             CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC--CEEEEeccccCCCcccccccccccCCCccee
Q 013008          234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM  311 (451)
Q Consensus       234 d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~  311 (451)
                      +.+.+++.+...++..+++..+..++|...+    ++.+.++|++|+  +++++|-+++ +|..  ..-.+  ....|++
T Consensus       123 ~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~g~~--pid~~--~~giD~~  193 (382)
T d2bkwa1         123 PLELITEKLSQNSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFD--EWGVDFA  193 (382)
T ss_dssp             CHHHHHHHHHHSCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTT--TTTCSEE
T ss_pred             chhHHHHHhhhccchheeeeecccccccccc----chhhhhhccccccceeeeeecccc-cccc--ccccc--ccCeeEE
Confidence            5677777776556778888888888888888    899999988875  9999999996 4321  22222  3347888


Q ss_pred             eec--ccccCCcccccccccHHHHhhccCC-------------------------CccC-CCCCcHHHHHHHHHHHHHhc
Q 013008          312 TLA--KPLAGGLPIGAALVTEKVASAINYG-------------------------DHGS-TFAGSPLVCNAAIAVLDKIS  363 (451)
Q Consensus       312 t~s--K~lg~G~~iG~v~~~~~i~~~~~~~-------------------------~~~~-t~~~~~~~~aaa~aal~~~~  363 (451)
                      ++|  |+++|...+|+++.++++.+.+.+.                         .... .+..+.....+..++|+.+.
T Consensus       194 ~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~  273 (382)
T d2bkwa1         194 LTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEIL  273 (382)
T ss_dssp             EEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             eecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHH
Confidence            776  8887545678888998877654321                         0011 22345556777778888764


Q ss_pred             ChHHHH---H-----------HHhCCCCc--c----eecccceeEEEEecCChHHHHHHHHHCCceeeecCC----CCEE
Q 013008          364 NPAFLA---S-----------KLARNPHV--K----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----GNVV  419 (451)
Q Consensus       364 ~~~~~~---~-----------~~~~~~~~--~----~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~i  419 (451)
                      +++...   +           +.......  .    ..+. ..+..+.+ .+..++.+.|.++||.+..+..    +.++
T Consensus       274 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s-~~v~~~~~-~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~  351 (382)
T d2bkwa1         274 EEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSA-HGLTAVYV-ADPPDVIAFLKSHGVVIAGGIHKDIGPKYI  351 (382)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBC-SSCEEEEC-SCHHHHHHHHHHTTEECBCCCCTTTGGGEE
T ss_pred             HhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccC-CcEEEEcC-CCHHHHHHHHHHCCeEEECCCChhhcCCEE
Confidence            432211   1           11111111  0    0111 12334444 3567888889999999887622    3679


Q ss_pred             EEe-CCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          420 RLV-PPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       420 ri~-~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      ||+ +....++|+++.+++.|+.+.+.++
T Consensus       352 Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~  380 (382)
T d2bkwa1         352 RIGHMGVTACNKNLPYMKNCFDLIKLALQ  380 (382)
T ss_dssp             EECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred             EEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence            997 5566678888888888876666554

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.5e-12  Score=125.59  Aligned_cols=196  Identities=13%  Similarity=0.126  Sum_probs=134.3

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008          133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS  212 (451)
Q Consensus       133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~  212 (451)
                      .|....++....|+++|+++.+.+.++.++||..|+..++.++.            +++.||+.+..|.+......... 
T Consensus        48 ~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l~~l~------------~gd~iv~~~~~yg~t~~~~~~~l-  114 (393)
T d1n8pa_          48 EYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQSLP------------QGSHAVSIGDVYGGTHRYFTKVA-  114 (393)
T ss_dssp             CBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHTSC------------SSCEEEEESSCCHHHHHHHHHTS-
T ss_pred             eeeCCCChHHHHHHHHHHHHhCCceEEEecCchhHHHhhhhccc------------CCCeeeeeeeecccchhhhhhhh-
Confidence            35667788899999999999999999999999888865543322            58899999999976543322211 


Q ss_pred             CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHH----HhCCEEEEecc
Q 013008          213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD----DAGALLVFDEV  288 (451)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv  288 (451)
                              ....-.+.+++ .+.+++++++++ ++++|++|.+-++...++.    +++|+++|+    ++|+++|+|..
T Consensus       115 --------~~~gi~~~~~~-~~~~~~~~~i~~-~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT  180 (393)
T d1n8pa_         115 --------NAHGVETSFTN-DLLNDLPQLIKE-NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNT  180 (393)
T ss_dssp             --------TTTCSCCEEES-SHHHHHHHHSCS-SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECT
T ss_pred             --------hcccceeEEee-cchHHHHHHhhh-hcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecC
Confidence                    11122344554 356889998865 7899999998777766666    899999988    77899999998


Q ss_pred             ccCCCcccccccccccCCCccee--eecccccC-C-cccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH
Q 013008          289 QCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK  361 (451)
Q Consensus       289 ~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~  361 (451)
                      +...      ..+.-+....|++  +..|.++| | .-.|+++. ++++.+.++.......-..+|..+...+..|+.
T Consensus       181 ~atP------~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T  252 (393)
T d1n8pa_         181 FLSP------YISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT  252 (393)
T ss_dssp             TTHH------HHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred             ccCc------ccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc
Confidence            7421      1222233346776  56799987 5 77777764 466776664322222223467777666665553

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.6e-12  Score=128.80  Aligned_cols=318  Identities=12%  Similarity=-0.031  Sum_probs=183.4

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHhhccCC-C------eEEecCCHHHHHHHHHHHHHHHhhhc---
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFA-D------RVFFSNTGTEANEAAIKFARKFQRHS---  182 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~-e------~v~~~~sG~eA~~~al~~a~~~~~~~---  182 (451)
                      -+|++.+.+.+.+.+.......++  ++.+.++.++|+++++. +      .-.+|+||+|||..|+.++|..+..+   
T Consensus        66 ~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~  145 (450)
T d1pmma_          66 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA  145 (450)
T ss_dssp             CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhh
Confidence            578888888887765322212222  23366777788888762 1      25899999999999999988644211   


Q ss_pred             -CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008          183 -NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGI  261 (451)
Q Consensus       183 -~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~  261 (451)
                       +..   ....+++. ...|.+..-+....|.....   .+..+.-..   -|+++|++++++ ++.+|++.-.....|.
T Consensus       146 ~g~~---~~~~~~~~-~~~H~s~~Kaa~~~gi~~~~---v~~~~~~~~---~d~~~L~~~i~~-~t~~Vv~t~gtt~tG~  214 (450)
T d1pmma_         146 AGKP---TDKPNLVC-GPVQICWHKFARYWDVELRE---IPMRPGQLF---MDPKRMIEACDE-NTIGVVPTFGVTYTGN  214 (450)
T ss_dssp             HTCC---CSCCEEEE-SSCCHHHHHHHHHTTCEEEE---CCCBTTBCS---CCHHHHHHHCCT-TEEEEECBBSCTTTCB
T ss_pred             cCCC---CCCceEEe-cccHHHHHHHHHHcCCCceE---eeecCCCCc---CcHHHHHHHhhh-CceEEEeeeeeccCCC
Confidence             111   22334444 45687665555544332111   121121111   289999999975 5666666555555666


Q ss_pred             cccCHHHHHHHHHH------HHHhCCEEEEeccccCCCcccccccccc----cCC-Ccceeeec--ccccCCcccccccc
Q 013008          262 YSATKEFLQFLRDA------CDDAGALLVFDEVQCGLGRTGYLWAHEH----YGI-FPDIMTLA--KPLAGGLPIGAALV  328 (451)
Q Consensus       262 ~~~~~~~l~~l~~l------~~~~g~llI~DEv~tg~gr~G~~~~~~~----~~~-~pdi~t~s--K~lg~G~~iG~v~~  328 (451)
                      +-|    +++|.++      |+++|+++++|-++.|+-.   .+....    +++ ..|.++++  |.+.+.+.+|+++.
T Consensus       215 ~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~---p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~  287 (450)
T d1pmma_         215 YEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLA---PFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIW  287 (450)
T ss_dssp             BCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH---HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEE
T ss_pred             ccc----cchhhHHHHHHHHHhccCcEEEeehhhcccee---eeechhhhhhhcccceeEeecChhhccCCCCCeeEEEe
Confidence            554    4444444      5678999999999976521   011111    122 46777776  76655578889888


Q ss_pred             cHH-HHhh-cc--C---C--CccCCC--CCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceec--
Q 013008          329 TEK-VASA-IN--Y---G--DHGSTF--AGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVR--  382 (451)
Q Consensus       329 ~~~-i~~~-~~--~---~--~~~~t~--~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~--  382 (451)
                      +++ .... +.  .   +  ....+.  +.+.....+..+++..+..+++.+.             .++..+.+..+.  
T Consensus       288 r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~  367 (450)
T d1pmma_         288 RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTG  367 (450)
T ss_dssp             SSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEC
T ss_pred             cChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCC
Confidence            643 2211 11  0   0  001122  2222333334445554433333222             334455332221  


Q ss_pred             --cc-ceeEEEEec------CChHHHHHHHHHCCceee----ecC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          383 --GL-GLIIGIEFD------VSATPVVDACRDSGLLVL----TAG--KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       383 --g~-G~~~~~~~~------~~~~~~~~~l~~~Gv~~~----~~~--~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                        .. -..+.|.+.      .+..++.+.|.++|..+.    |..  ...++|+.+.-..|++++|++++.|++++++++
T Consensus       368 ~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~  447 (450)
T d1pmma_         368 RPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS  447 (450)
T ss_dssp             CTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHH
Confidence              11 123455552      245678999999997653    221  124689999888999999999999999999999


Q ss_pred             hcC
Q 013008          448 SNS  450 (451)
Q Consensus       448 ~~~  450 (451)
                      ++|
T Consensus       448 ~~p  450 (450)
T d1pmma_         448 DHP  450 (450)
T ss_dssp             HCC
T ss_pred             hCc
Confidence            887

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.45  E-value=4.3e-12  Score=123.37  Aligned_cols=295  Identities=18%  Similarity=0.154  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      .+-.+++.+.++......  ..-+...+++++++++++...++.++||+.|+++|++++. .         .++|+||+.
T Consensus        13 ~~~~~~~~~~l~~g~~~~--~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~-~---------~~gdeVi~p   80 (384)
T d1b9ha_          13 DAERNGLVRALEQGQWWR--MGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG-V---------GPGTEVIVP   80 (384)
T ss_dssp             HHHHHHHHHHHHTSCCBT--TTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT-C---------CTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCeee--cCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC-C---------CCCCEEEEe
Confidence            455778888887643211  1233478899999999999999999999999999998642 1         268899999


Q ss_pred             cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC  276 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~  276 (451)
                      .-+|..........+..+.+.    ...+....   -|++.+++.+.+ ++++|++....|..   ..    ++++.++|
T Consensus        81 ~~t~~a~~~ai~~~g~~p~~~----d~~~~~~~---~d~~~~~~~i~~-~tk~i~~~~~~g~~---~d----~~~i~~~~  145 (384)
T d1b9ha_          81 AFTFISSSQAAQRLGAVTVPV----DVDAATYN---LDPEAVAAAVTP-RTKVIMPVHMAGLM---AD----MDALAKIS  145 (384)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEE----CBCTTTCC---BCHHHHHHHCCT-TEEEECCBCGGGCC---CC----HHHHHHHH
T ss_pred             ccccccccccccccccccccc----cccccccc---cchhhhcccccc-cccccccccccccc---cc----cccchhhh
Confidence            888855443333333322211    00111100   178999999865 67888777666553   33    88999999


Q ss_pred             HHhCCEEEEeccccCCCcccccccccccCCCcceee--e--cccccCCccccccccc-HHHHhhccC----C--------
Q 013008          277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--L--AKPLAGGLPIGAALVT-EKVASAINY----G--------  339 (451)
Q Consensus       277 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~--sK~lg~G~~iG~v~~~-~~i~~~~~~----~--------  339 (451)
                      ++|++++|.|-+|+ +|-.-.+   ...|-.-|+.+  |  +|.++.| ..|+++.+ +++.+.++.    +        
T Consensus       146 ~~~~i~lieD~a~a-~ga~~~g---~~~g~~g~~~~~Sf~~~K~i~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~  220 (384)
T d1b9ha_         146 ADTGVPLLQDAAHA-HGARWQG---KRVGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDR  220 (384)
T ss_dssp             HHHTCCBCEECTTC-TTCEETT---EEGGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCS
T ss_pred             hhhhhhhhhhhcee-cccccCC---EecCcccccceeccccccccccc-ccchhhhhhHHHHHHHHHHHhcCCCCccccc
Confidence            99999999999996 4322111   11122234443  3  4888654 34666664 455444311    0        


Q ss_pred             -----CccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCccee----c---ccceeEEEEecC---
Q 013008          340 -----DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDV----R---GLGLIIGIEFDV---  394 (451)
Q Consensus       340 -----~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v----~---g~G~~~~~~~~~---  394 (451)
                           ..+..+-.+.+.++.++..|+.+++  +.++          .++.++.+...    .   ....++.+.+..   
T Consensus       221 ~~~~~~~G~n~rms~l~Aaig~~qL~~ld~--~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (384)
T d1b9ha_         221 RYFHKIAGSNMRLNEFSASVLRAQLARLDE--QIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE  298 (384)
T ss_dssp             SCCCCSCCCBCBCBHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH
T ss_pred             cccccccccccccccchhhhhhhhhhhccc--chhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc
Confidence                 1123344567877777777765432  1111          33444433111    1   111223333321   


Q ss_pred             -ChHHHHHHHHHCCceeeecCC--------------------------------CCEEEEeCCCCCC-HHHHHHHHHHHH
Q 013008          395 -SATPVVDACRDSGLLVLTAGK--------------------------------GNVVRLVPPLIIS-EQELDQAVEILC  440 (451)
Q Consensus       395 -~~~~~~~~l~~~Gv~~~~~~~--------------------------------~~~iri~~~~~~t-~e~i~~~l~~l~  440 (451)
                       ....+.+.|.++||-+.+...                                .+.+.+-....+| ++|++.+++.|+
T Consensus       299 ~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~  378 (384)
T d1b9ha_         299 ERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIA  378 (384)
T ss_dssp             HHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHH
Confidence             124689999999997653210                                0235554444556 679999999999


Q ss_pred             HHHHH
Q 013008          441 KTLPV  445 (451)
Q Consensus       441 ~~l~~  445 (451)
                      +++++
T Consensus       379 ~~l~~  383 (384)
T d1b9ha_         379 DAVAR  383 (384)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            99864

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=8e-12  Score=119.65  Aligned_cols=296  Identities=16%  Similarity=0.098  Sum_probs=177.3

Q ss_pred             CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 013008          115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE  192 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~  192 (451)
                      -+|+|.+|+.+..  ..|.+ ........+..+.|.+.++  .+.++++.||++|+++++..+..           ++++
T Consensus        11 v~~~V~~am~~~~--~~hr~-~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~-----------~g~~   76 (348)
T d1iuga_          11 LHPKALEALARPQ--LHHRT-EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA-----------PGER   76 (348)
T ss_dssp             CCHHHHHHHHSCC--CCTTS-HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC-----------TTCE
T ss_pred             CCHHHHHHhcCCC--CCCCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhccc-----------cccc
Confidence            4688888875432  11110 0011225566666777766  45788899999999999986541           5788


Q ss_pred             EEEEcCCccCChhhhhhc-cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHH
Q 013008          193 FVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF  271 (451)
Q Consensus       193 ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~  271 (451)
                      +++...++.|.......- .+...          .....++.+...++. +...++..|++.......|.+.+    +++
T Consensus        77 vlv~~~G~f~~~~~~~a~~~~~~~----------~~~~~~~g~~~~~~~-~~~~~~~~v~~~h~eTstG~~~~----i~~  141 (348)
T d1iuga_          77 VLVPVYGKFSERFYEIALEAGLVV----------ERLDYPYGDTPRPED-VAKEGYAGLLLVHSETSTGALAD----LPA  141 (348)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEE----------EEEECCTTCCCCTTT-SCCSSCSEEEEESEETTTTEECC----HHH
T ss_pred             ceeecchHHHHHHHHHHHhcCccc----------ccccccCCCcccccc-ccccCCCeeEEEecchhhhhhcc----HHH
Confidence            888887765543222111 11100          011112221111122 22335556666655556677777    999


Q ss_pred             HHHHHHHhC--CEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCC-------
Q 013008          272 LRDACDDAG--ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD-------  340 (451)
Q Consensus       272 l~~l~~~~g--~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~-------  340 (451)
                      |.++|++|+  +++++|-+++ +|-.  ....+.++  .|+++.|  |+++|--.+|+++.+++.++.+.+..       
T Consensus       142 i~~~~~~~~~~~l~~vDavss-~g~~--~i~~d~~~--iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~  216 (348)
T d1iuga_         142 LARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLAR  216 (348)
T ss_dssp             HHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHH
T ss_pred             HHHHHHhhhccceeechhhhc-cccc--cccccccc--CCEEEeccccceecCCceeeeeechHHHhhhcccccccchhh
Confidence            999999985  7899999886 4321  22334443  6777665  99965335688889998888765421       


Q ss_pred             ------ccC-CCCCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCC--CcceecccceeEEEEec--CCh
Q 013008          341 ------HGS-TFAGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNP--HVKDVRGLGLIIGIEFD--VSA  396 (451)
Q Consensus       341 ------~~~-t~~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~--~~~~v~g~G~~~~~~~~--~~~  396 (451)
                            .+. .++.+.....+..++|+.+.++ ..++             +.+...  ....-+. ..+..+.+.  .+.
T Consensus       217 ~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s-~~v~~~~~P~g~~~  294 (348)
T d1iuga_         217 ELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLRPVPKRFS-PAVAAFYLPEGVPY  294 (348)
T ss_dssp             HHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBC-TTCEEEECCTTCCH
T ss_pred             hhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhhhhhhccChhhcC-CeEEEEECCCCCCH
Confidence                  122 2334455666777888876433 1111             111111  1111111 224456552  467


Q ss_pred             HHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008          397 TPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVL  446 (451)
Q Consensus       397 ~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~  446 (451)
                      .++.+.|.++|+.+.++..   +..+||...-..+.+|++.+++.|+++|+++
T Consensus       295 ~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         295 ARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             HHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8899999999999887642   4689997554689999999999999999876

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.38  E-value=5.2e-11  Score=118.40  Aligned_cols=296  Identities=11%  Similarity=0.026  Sum_probs=168.1

Q ss_pred             HHHHHHHHHhhccCCC-----------eEEecCCHHHHHHHHHHHHHHHhhhc---CCCCC----CCCceEEEEcCCccC
Q 013008          141 PQIELAKRLVACSFAD-----------RVFFSNTGTEANEAAIKFARKFQRHS---NPDSK----EPATEFVSFTNSFHG  202 (451)
Q Consensus       141 ~~~~l~~~l~~~~~~e-----------~v~~~~sG~eA~~~al~~a~~~~~~~---~~~~~----~~~~~ii~~~~~yhg  202 (451)
                      .+.++.++|++.++.+           .-++++||++||..|+.+||.....+   ...+.    ..+.-+++....-|-
T Consensus       114 iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~  193 (476)
T d1js3a_         114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS  193 (476)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred             HHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccH
Confidence            3667778888887632           46799999999999999998543100   00000    012345666666676


Q ss_pred             ChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHH
Q 013008          203 RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD  277 (451)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~  277 (451)
                      +..-++.+.|.....   .|...+...    |+++|++.|++     ..+.+|+..--..+.|.+-|    +++|.++|+
T Consensus       194 Si~ka~~~lGl~~~~---v~~d~~~~m----d~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp----l~~I~~i~~  262 (476)
T d1js3a_         194 SVERAGLIGGVKLKA---IPSDGKFAM----RASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICH  262 (476)
T ss_dssp             HHHHHHHHHTCEEEE---ECCCTTSCC----CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHH
T ss_pred             HHHHHHHhcCceEEE---eccCCCCCc----CHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----HHHHHHHHH
Confidence            665555544322111   122222211    89999999962     23445555555556677777    999999999


Q ss_pred             HhCCEEEEeccccCCCcccccccccccCC-Ccceeeec--ccccCCcccccccccH-H-HHhhccCC--C----------
Q 013008          278 DAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTE-K-VASAINYG--D----------  340 (451)
Q Consensus       278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~-~-i~~~~~~~--~----------  340 (451)
                      +||++|++|-++.|+...-........|+ ..|.+++.  |.+...+..|+++.++ . +...+...  .          
T Consensus       263 ~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~  342 (476)
T d1js3a_         263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGL  342 (476)
T ss_dssp             HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCS
T ss_pred             hcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccccc
Confidence            99999999999977533222111112244 46878764  8877667788887764 2 22222110  0          


Q ss_pred             ----ccCCCC-CcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCccee-cccceeEEEEecC---ChHH
Q 013008          341 ----HGSTFA-GSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDV-RGLGLIIGIEFDV---SATP  398 (451)
Q Consensus       341 ----~~~t~~-~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v-~g~G~~~~~~~~~---~~~~  398 (451)
                          ...+.. +-+........+++.+..+++.+.             .++..|.+.-+ ++.-.++.|.+..   ...+
T Consensus       343 ~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~n~~  422 (476)
T d1js3a_         343 ITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEA  422 (476)
T ss_dssp             CCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHH
T ss_pred             cccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHHHHH
Confidence                001111 111112223333443323222221             33445544333 2233345555532   1346


Q ss_pred             HHHHHHHCC-ceeeecC-C-CCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHh
Q 013008          399 VVDACRDSG-LLVLTAG-K-GNVVRLVPP-LIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       399 ~~~~l~~~G-v~~~~~~-~-~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +.+++.+.| +++.+.. . ..++|+++. ..++++||+.+++.|++..+++.
T Consensus       423 l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll  475 (476)
T d1js3a_         423 LLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL  475 (476)
T ss_dssp             HHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            777888777 4454431 1 146898764 66789999999999999988764

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.33  E-value=1.1e-10  Score=112.61  Aligned_cols=294  Identities=15%  Similarity=0.163  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008          117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF  196 (451)
Q Consensus       117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~  196 (451)
                      .+-.+++.+.++....    ...+...++++++++.++.+.+++++||+.|+.+|++++....+        +++.||+.
T Consensus        12 ~~~~~~v~~~l~~~~~----~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~--------~~~eVi~p   79 (371)
T d2fnua1          12 KEDKKAVLEVLNSKQL----TQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSA--------DRNEIITT   79 (371)
T ss_dssp             HHHHHHHHHHHTSSCC----SSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCT--------TSCEEEEC
T ss_pred             HHHHHHHHHHHcCCCc----cCCHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCC--------CCCeeecc
Confidence            4556778888765322    22345788999999999999999999999999999996542111        24578887


Q ss_pred             cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008          197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC  276 (451)
Q Consensus       197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~  276 (451)
                      .-+|.......+..+..+.+.    ...++..    .+.+++++.+.+ ++.+|++-...|.   ...    ++++.++|
T Consensus        80 ~~t~~a~~~ai~~~G~~pv~v----Di~~~~~----~~~~~~~~~~~~-~t~avi~vh~~G~---~~~----~~~i~~~~  143 (371)
T d2fnua1          80 PISFVATANMLLESGYTPVFA----GIKNDGN----IDELALEKLINE-RTKAIVSVDYAGK---SVE----VESVQKLC  143 (371)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEC----CBCTTSS----BCGGGSGGGCCT-TEEEEEEECGGGC---CCC----HHHHHHHH
T ss_pred             cccccccceeeeccCcccccc----ccccccc----ccchhhhhhccc-hhhcccccccccc---ccc----cccccccc
Confidence            766654333222233222221    1111111    234566677654 6777776666654   344    88999999


Q ss_pred             HHhCCEEEEeccccCCCcccccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccCC------------
Q 013008          277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG------------  339 (451)
Q Consensus       277 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~------------  339 (451)
                      +++|++||.|-+|+ +|..   +.-...|-.-|+.++|    |.++.| -.|+++.+ +++.+.++..            
T Consensus       144 ~~~~i~lIEDaaqa-~Ga~---~~~~~~G~~g~~~~~Sf~~~K~l~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~  218 (371)
T d2fnua1         144 KKHSLSFLSDSSHA-LGSE---YQNKKVGGFALASVFSFHAIKPITTA-EGGAVVTNDSELHEKMKLFRSHGMLKKDFFE  218 (371)
T ss_dssp             HHHTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTTEEESSSSC
T ss_pred             cccchhhccchhhc-cCce---eccccCCccccccccccccccccccc-cceEEEeechhhhhhcccccccccccccccc
Confidence            99999999999996 5321   1112234445555554    887654 24777664 5666654321            


Q ss_pred             ----CccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec----ccc--eeEEEEec----CC
Q 013008          340 ----DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR----GLG--LIIGIEFD----VS  395 (451)
Q Consensus       340 ----~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~----g~G--~~~~~~~~----~~  395 (451)
                          ..+..+..+.+.++.++.-|+.++.  +.++          .++..+.+....    ...  ..+.+.+.    ..
T Consensus       219 ~~~~~~G~n~r~sel~Aaigl~qL~~l~~--~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  296 (371)
T d2fnua1         219 GEVKSIGHNFRLNEIQSALGLSQLKKAPF--LMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTC  296 (371)
T ss_dssp             EEESSCCCBCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGG
T ss_pred             cccccccccccccchhhhhhhhhhhhccc--hhhhhhhhhhhhcccccccccccccccccccccccccccccccccchhH
Confidence                0133444567887777777765432  2221          344454332211    111  22233332    12


Q ss_pred             hHHHHHHHHHCCceeeec--------------CCC----------CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVLTA--------------GKG----------NVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~~~--------------~~~----------~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ...+.+.|.++||-+.+.              ..+          ..+.+-....+|++|++++++.|.+.++.
T Consensus       297 r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         297 KKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             HHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            357889999999876531              010          23555344456999999999999998875

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.25  E-value=5.4e-10  Score=107.77  Aligned_cols=210  Identities=13%  Similarity=0.145  Sum_probs=127.5

Q ss_pred             HHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 013008          120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS  199 (451)
Q Consensus       120 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~  199 (451)
                      ++++.+.++.... +  ..-+...++++.+++.++.+.+++++|||.|+.+|++++.-          .++|+||++.-+
T Consensus         4 ~~~~~~~l~~~~~-~--~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~----------~~gdeVi~p~~t   70 (374)
T d1o69a_           4 LKYIEEVFKSNYI-A--PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGV----------KQDDIVLASSFT   70 (374)
T ss_dssp             HHHHHHHHHHTTT-S--CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTC----------CTTCEEEEESSS
T ss_pred             HHHHHHHHhcCCc-C--CCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCC----------CCcCEEEeCCcc
Confidence            4677777776321 1  11344788999999999999999999999999999996531          258899998887


Q ss_pred             ccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH--HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHH
Q 013008          200 FHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE--ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD  277 (451)
Q Consensus       200 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~  277 (451)
                      |..........+..+.+..    ..++..   ..+.+  .++..+.. ++.+|++-...|..   ..    ++++.++|+
T Consensus        71 ~~a~~~~~~~~g~~pv~~D----i~~~~~---~~~~~~~~~~~~~~~-~~~aii~~~~~G~~---~d----~~~i~~~~~  135 (374)
T d1o69a_          71 FIASVAPICYLKAKPVFID----CDETYN---IDVDLLKLAIKECEK-KPKALILTHLYGNA---AK----MDEIVEICK  135 (374)
T ss_dssp             CGGGTHHHHHTTCEEEEEC----BCTTSS---BCHHHHHHHHHHCSS-CCCEEEEECGGGCC---CC----HHHHHHHHH
T ss_pred             hHhhHHHHhhccceeEecc----cccccc---cccccccccchhccc-ccccccccccccch---hh----hHHHHHHhh
Confidence            7555433333332222110    000000   01222  23334333 46666665555543   33    999999999


Q ss_pred             HhCCEEEEeccccCCCcccccccccccCCCcceeeec----ccccCCcccccccc-cHHHHhhccCC-------------
Q 013008          278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALV-TEKVASAINYG-------------  339 (451)
Q Consensus       278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~-~~~i~~~~~~~-------------  339 (451)
                      ++|++||.|-+|+ ||-.   +.-...|-.-|+.++|    |.++.| -.|+++. ++++++.++..             
T Consensus       136 ~~~i~vIED~a~a-~g~~---~~~~~~G~~gd~~~fSf~~~K~l~tg-eGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~  210 (374)
T d1o69a_         136 ENDIVLIEDAAEA-LGSF---YKNKALGTFGEFGVYSYNGNKIITTS-GGGMLIGKNKEKIEKARFYSTQARENCLHYEH  210 (374)
T ss_dssp             HTTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCC
T ss_pred             ccCcchhhhhhhh-hcce---ECCeecCCCCceEEEeccCccccccc-cceeehhhhHHHHHhhcccccccccccccccc
Confidence            9999999999996 5321   1111223344777664    888643 2356555 56777654211             


Q ss_pred             -CccCCCCCcHHHHHHHHHHHHHh
Q 013008          340 -DHGSTFAGSPLVCNAAIAVLDKI  362 (451)
Q Consensus       340 -~~~~t~~~~~~~~aaa~aal~~~  362 (451)
                       ..+..+..+.+.++.+++-|+.+
T Consensus       211 ~~~G~N~rm~ei~Aaig~~qL~~l  234 (374)
T d1o69a_         211 LDYGYNYRLSNVLGAIGVAQMEVL  234 (374)
T ss_dssp             SSCCCBCBCCHHHHHHHHHHHTTH
T ss_pred             ccCCccccccchhhhhhHHHHhhh
Confidence             11234456788888888777654

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.16  E-value=8e-10  Score=104.95  Aligned_cols=306  Identities=16%  Similarity=0.124  Sum_probs=174.2

Q ss_pred             CCHHHHHHHHHHHh-hcccccC----CCCCHHH---HHHH-HHHhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCC
Q 013008          115 GDADWIKAVVDQAN-VLTHVSN----MYYSIPQ---IELA-KRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       115 ~~p~v~~a~~~~~~-~~~~~~~----~~~~~~~---~~l~-~~l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      ..|.|.+++...+. ++.-++.    +...+..   +.++ ++..+.++.+.+-+ ..||+.||..++.++.        
T Consensus        35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all--------  106 (405)
T d1kl1a_          35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVL--------  106 (405)
T ss_dssp             CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred             CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhc--------
Confidence            56888888777663 3322211    1233332   2333 33445567654433 4679999999888665        


Q ss_pred             CCCCCCceEEEEcCCccCChhhhhhcc--CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008          185 DSKEPATEFVSFTNSFHGRTMGALALT--SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY  262 (451)
Q Consensus       185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~  262 (451)
                         +|+|+|+..+...-|+........  +.. +.....+..++...+   |.++++++++..+++.|++-...-.-  .
T Consensus       107 ---~pGD~im~l~l~~GGHlshg~~~~~~g~~-~~~~~y~~d~~~~~I---D~d~l~~~a~~~kPklIi~G~S~y~r--~  177 (405)
T d1kl1a_         107 ---EHGDTVLGMNLSHGGHLTHGSPVNFSGVQ-YNFVAYGVDPETHVI---DYDDVREKARLHRPKLIVAAASAYPR--I  177 (405)
T ss_dssp             ---CTTCEEEEECGGGTCCGGGTCTTSHHHHH-SEEEEECBCTTTCSB---CHHHHHHHHHHHCCSEEEECCSSCCS--C
T ss_pred             ---CCCCEEEEeecccccccccCccccccceE-EEEEEeccchhcccc---cHHHHHHHHHhhCcceEEeccccccc--c
Confidence               379999999887766653321111  100 000000111111111   78999998886678888886543221  1


Q ss_pred             ccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCC
Q 013008          263 SATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYG  339 (451)
Q Consensus       263 ~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~  339 (451)
                      .+    +++++++|++.|++|++|=.| +|+--.|. +. .-+. ..|++|.+  |+|.| -+.|.++.++++.+.+...
T Consensus       178 ~d----~~~~reIad~vga~l~~D~aH~~GLIa~g~-~~-~P~~-~aDvvt~tThKtlrG-Prgg~I~~~~~~~~~i~~a  249 (405)
T d1kl1a_         178 ID----FAKFREIADEVGAYLMVDMAHIAGLVAAGL-HP-NPVP-YAHFVTTTTHKTLRG-PRGGMILCQEQFAKQIDKA  249 (405)
T ss_dssp             CC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SC-CSTT-TCSEEEEESSSTTCC-CSCEEEEECHHHHHHHHHH
T ss_pred             cC----hHHHHHHHhhhCCEEecchhhHhhhhhhhh-cC-Chhh-hhhheeccccccccC-CCCceEEecchhHHHHHhh
Confidence            23    899999999999999999998 44422221 11 1122 35888766  88864 4778888999888877644


Q ss_pred             CccCCCCCcHHHHHHHH-HHHHHhcCh---HHHHH-------HHhCCC--Ccceecc--cceeEEEEec---CChHHHHH
Q 013008          340 DHGSTFAGSPLVCNAAI-AVLDKISNP---AFLAS-------KLARNP--HVKDVRG--LGLIIGIEFD---VSATPVVD  401 (451)
Q Consensus       340 ~~~~t~~~~~~~~aaa~-aal~~~~~~---~~~~~-------~~~~~~--~~~~v~g--~G~~~~~~~~---~~~~~~~~  401 (451)
                      .+.+..+++-+...|++ .++.....+   ++.++       +.+.+.  .+..+.|  ...++++++.   .......+
T Consensus       250 vfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~~~~g~~ae~  329 (405)
T d1kl1a_         250 IFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEK  329 (405)
T ss_dssp             HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHH
T ss_pred             hCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCccceeeccccccCCcHHHHHH
Confidence            44444444333333332 223332222   22222       221111  2222333  2456777772   34555556


Q ss_pred             HHHHCCceee----ecC-----CCCEEEEeCC----CCCCHHHHHHHHHHHHHHHHH
Q 013008          402 ACRDSGLLVL----TAG-----KGNVVRLVPP----LIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       402 ~l~~~Gv~~~----~~~-----~~~~iri~~~----~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .|-+.||.+.    |..     ..+.+||-.+    ....++|+.++.+.|.++++.
T Consensus       330 ~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         330 VLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             HHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            6667799876    221     1256899655    346789999999999988853

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.16  E-value=4.7e-11  Score=114.70  Aligned_cols=296  Identities=11%  Similarity=-0.013  Sum_probs=151.8

Q ss_pred             CCHHHHHHHHHHHhhcccccC----CCC-----CHHHHHHHHHHhhccCC-C--eEEecCCHHHHHHHHHHHHHHHhhhc
Q 013008          115 GDADWIKAVVDQANVLTHVSN----MYY-----SIPQIELAKRLVACSFA-D--RVFFSNTGTEANEAAIKFARKFQRHS  182 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~----~~~-----~~~~~~l~~~l~~~~~~-e--~v~~~~sG~eA~~~al~~a~~~~~~~  182 (451)
                      .+++|.+||.+++-.+.....    ..+     .....+..+.|+++++. +  .++|++|+++++..++.....     
T Consensus        14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~-----   88 (361)
T d2c0ra1          14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL-----   88 (361)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccc-----
Confidence            468999999987754321100    011     12366778888888872 2  688877776666544433221     


Q ss_pred             CCCCCCCCceEEEEcCCccCChhhhhhc-cCCCCcCCCCcCCCCCeeEee---CCCHHHHHHhcCCCCeEEEEEccccCC
Q 013008          183 NPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMPGVNFVE---YGNIEATRKLIQPGKTAAVFVEPIQGE  258 (451)
Q Consensus       183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~d~~~le~~l~~~~~aavi~ep~~~~  258 (451)
                           .+++++++...+..+....-+.. .+...          .....+   ..+++.+++.+.......+..+     
T Consensus        89 -----~~~~~~l~~~~g~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----  148 (361)
T d2c0ra1          89 -----KEGQTANYVMTGSWASKALKEAKLIGDTH----------VAASSEASNYMTLPKLQEIQLQDNAAYLHLT-----  148 (361)
T ss_dssp             -----CTTCEEEEEECSHHHHHHHHHHHHHSCEE----------EEEECGGGTTCSCCCGGGCCCCTTEEEEEEE-----
T ss_pred             -----cCCCceEEEeechhhhhhhhhhhhcCcee----------eeeccccccccchhhhhhhcccCcceEEEEe-----
Confidence                 14667776654443332221111 11110          000011   1145566666665444443332     


Q ss_pred             CCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC
Q 013008          259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY  338 (451)
Q Consensus       259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~  338 (451)
                      .|...+    ++++.++|++||+++++|-|++ +|  +..  ++...+..|+.+.+|.++.+-..++++..+.+...-..
T Consensus       149 tg~~~~----~~~i~~~~~~~~al~~vDavss-~g--~~~--id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~  219 (361)
T d2c0ra1         149 SNETIE----GAQFKAFPDTGSVPLIGDMSSD-IL--SRP--FDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKH  219 (361)
T ss_dssp             SEETTT----TEECSSCCCCTTSCEEEECTTT-TT--SSC--CCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTT
T ss_pred             ccccee----cceEEEeeccCCceEEEEeecc-cc--ccc--cccccceeEEEecccccccccCcEEEEEhHHhhhCccc
Confidence            233344    5567789999999999999996 43  222  23334567778888988742122222233332221111


Q ss_pred             C-----------CccCCCCCcHHHHHHHHHHHHH-hcChHH---HHH----------HHhCC-CC-----cceeccccee
Q 013008          339 G-----------DHGSTFAGSPLVCNAAIAVLDK-ISNPAF---LAS----------KLARN-PH-----VKDVRGLGLI  387 (451)
Q Consensus       339 ~-----------~~~~t~~~~~~~~aaa~aal~~-~~~~~~---~~~----------~~~~~-~~-----~~~v~g~G~~  387 (451)
                      .           ........++.....+..++.. ......   ..+          ..... ..     ....+.. ..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~-~~  298 (361)
T d2c0ra1         220 LPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSD-MN  298 (361)
T ss_dssp             SCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCS-SE
T ss_pred             cccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccc-eE
Confidence            0           0111112222222222222222 111111   111          11111 11     1112222 22


Q ss_pred             EEEEec--CChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          388 IGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       388 ~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ..+.+.  .+..++.+.|.++||.+..+.. -..+||+....++.||++++++.|++..++
T Consensus       299 ~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         299 ITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            334442  2356788999999998877632 123899999999999999999999987654

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.8e-09  Score=100.00  Aligned_cols=304  Identities=16%  Similarity=0.124  Sum_probs=171.2

Q ss_pred             CCCHHHHHHHHHHHh-hcccccC----CCCCHH---HHHHHHH-HhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcC
Q 013008          114 HGDADWIKAVVDQAN-VLTHVSN----MYYSIP---QIELAKR-LVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSN  183 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~-~~~~~~~----~~~~~~---~~~l~~~-l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~  183 (451)
                      +..|.|.+++...+. ++.-++.    +..++.   .+.|+.. ..+.++.+.+-+ ..||+.||.+++.++.       
T Consensus        37 ~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All-------  109 (416)
T d1dfoa_          37 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL-------  109 (416)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhc-------
Confidence            356888888776553 2222211    123333   3344433 344567664443 5789999999998665       


Q ss_pred             CCCCCCCceEEEEcCCccCChhhhhhcc--CCCCcC-CCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCC
Q 013008          184 PDSKEPATEFVSFTNSFHGRTMGALALT--SKEHYR-SPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG  260 (451)
Q Consensus       184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G  260 (451)
                          +|+|+|+..+...-|+.......+  +. .+. ..+ +....-.    =|.+.+++..+..++++|++-...-  .
T Consensus       110 ----~pGD~Il~l~l~~GGHlshg~~~~~~g~-~~~~~~y-~~d~~~~----IDyd~l~~~a~~~kPklIi~G~S~y--~  177 (416)
T d1dfoa_         110 ----EPGDTVLGMNLAHGGHLTHGSPVNFSGK-LYNIVPY-GIDATGH----IDYADLEKQAKEHKPKMIIGGFSAY--S  177 (416)
T ss_dssp             ----CTTCEEEEECTTTTCCGGGTCTTSHHHH-HSEEEEE-CBCSSSS----BCHHHHHHHHHHHCCSEEEEECSSC--C
T ss_pred             ----CCCCeeeeccccccccccccccccccCc-eEEEEec-ccCCccC----ccHHHHHHHHHHhccceEEeccccc--c
Confidence                279999999887666543322111  10 000 000 0001101    1889999888766778888764321  1


Q ss_pred             ccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCcceeee--cccccCCccccccccc---HHHHh
Q 013008          261 IYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT---EKVAS  334 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~---~~i~~  334 (451)
                      -..+    +++++++|++.|++|++|-.| +|+- .|..+ ..-+. ..|++|.  -|+|.| -+.|.++.+   +++.+
T Consensus       178 r~~d----~~~~reiad~vga~l~~D~aH~~GLI-a~g~~-~sP~~-~aDvvt~tThKtlrG-PrggiI~~~~~~~~~~~  249 (416)
T d1dfoa_         178 GVVD----WAKMREIADSIGAYLFVDMAHVAGLV-AAGVY-PNPVP-HAHVVTTTTHKTLAG-PRGGLILAKGGSEELYK  249 (416)
T ss_dssp             SCCC----HHHHHHHHHHTTCEEEEECTTTHHHH-HHTSS-CCCTT-TSSEEEEESSSTTCC-CSCEEEEESSCCHHHHH
T ss_pred             cccC----HHHHHHHHHhcCceEEcchhhhhcce-ecccc-CCccc-ccceeeeehhhcccC-CCceEEEeccchHhHHH
Confidence            1233    899999999999999999998 4442 22211 11122 2478755  488875 366777775   57666


Q ss_pred             hccCCCccCCCCCcHHHH-HHHHHHHHHhcChH---HHHH-------HH---hCCCCcceecc--cceeEEEEec---CC
Q 013008          335 AINYGDHGSTFAGSPLVC-NAAIAVLDKISNPA---FLAS-------KL---ARNPHVKDVRG--LGLIIGIEFD---VS  395 (451)
Q Consensus       335 ~~~~~~~~~t~~~~~~~~-aaa~aal~~~~~~~---~~~~-------~~---~~~~~~~~v~g--~G~~~~~~~~---~~  395 (451)
                      .+....+.+..+++-+.. ++...++.....++   +.++       +.   .... +.-+.|  ...++.+++.   ..
T Consensus       250 ~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G-~~iv~ggTdnHlvlvdl~~~~~~  328 (416)
T d1dfoa_         250 KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERG-YKVVSGGTDNHLFLVDLVDKNLT  328 (416)
T ss_dssp             HHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCC
T ss_pred             HHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCC-cccccCCCCCceeEEEecccCCC
Confidence            665333333344332222 22223344433333   2222       11   1111 222222  2356677773   24


Q ss_pred             hHHHHHHHHHCCceee----ecC-----CCCEEEEeCC----CCCCHHHHHHHHHHHHHHHHH
Q 013008          396 ATPVVDACRDSGLLVL----TAG-----KGNVVRLVPP----LIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       396 ~~~~~~~l~~~Gv~~~----~~~-----~~~~iri~~~----~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      ...+.+.|.+.||.+.    |+.     .++.|||..+    ....++|++++.+.|.++++.
T Consensus       329 G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         329 GKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            5666677777799875    221     1356999655    346789999999999988864

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.02  E-value=2.7e-10  Score=109.03  Aligned_cols=299  Identities=8%  Similarity=-0.066  Sum_probs=155.5

Q ss_pred             CCHHHHHHHHHHHhhccccc----CCCC-----CHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhc
Q 013008          115 GDADWIKAVVDQANVLTHVS----NMYY-----SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHS  182 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~----~~~~-----~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~  182 (451)
                      .|++|.+++.+++-.+....    ...+     .....+..+.|+++++   .+.+++++|+++++..+......     
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~-----   88 (360)
T d1w23a_          14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLL-----   88 (360)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhc-----
Confidence            47999999998764421110    0011     1235677788888887   23588888877777665554431     


Q ss_pred             CCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008          183 NPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGI  261 (451)
Q Consensus       183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~  261 (451)
                           .+++++++...++++......... +........    .   .....+++.++.....  ...+.++.+.   |.
T Consensus        89 -----~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~--~~~~~~~~~t---g~  151 (360)
T d1w23a_          89 -----TKGTIGNYVLTGSWSEKALKEAKLLGETHIAAST----K---ANSYQSIPDFSEFQLN--ENDAYLHITS---NN  151 (360)
T ss_dssp             -----CTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEEC----G---GGTSCSCCCGGGCCCC--TTEEEEEEES---EE
T ss_pred             -----ccCcccceeeccchhhhhHHHHHHhhhcceeecc----c---cccccchhhhhhcccc--cccceeEecC---Cc
Confidence                 146777777666555433322211 100000000    0   0001123334444332  3345555443   44


Q ss_pred             cccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCC-
Q 013008          262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD-  340 (451)
Q Consensus       262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~-  340 (451)
                      ..+    +++|.++|+++|+++|+|-+++ +|  +...-++  .+..|+.+++|.++.+-+.+.++.++...+...... 
T Consensus       152 ~~~----~~~i~~~~~~~g~l~ivDavqs-~g--~~~id~~--~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  222 (360)
T d1w23a_         152 TIY----GTQYQNFPEINHAPLIADMSSD-IL--SRPLKVN--QFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPT  222 (360)
T ss_dssp             TTT----TEECSSCCCCCSSCEEEECTTT-TT--SSCCCGG--GCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCG
T ss_pred             ccc----ceeeeeccccceeeEEeecccc-cc--ccccccc--cccceEEeeccccccCCcceeeEechhhhcccccCCc
Confidence            555    7788899999999999999996 43  2222233  345788899988875433444444444332221110 


Q ss_pred             ----------ccCCCCCcHHHHHHHHHHHHH-hcC---hHHHHH----------HHhCCCC------cceecccceeEEE
Q 013008          341 ----------HGSTFAGSPLVCNAAIAVLDK-ISN---PAFLAS----------KLARNPH------VKDVRGLGLIIGI  390 (451)
Q Consensus       341 ----------~~~t~~~~~~~~aaa~aal~~-~~~---~~~~~~----------~~~~~~~------~~~v~g~G~~~~~  390 (451)
                                ........+....+....+.. ...   ..+.++          .......      -...|..+ ...|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~-vvsf  301 (360)
T d1w23a_         223 MLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLM-NVTF  301 (360)
T ss_dssp             GGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSS-EEEE
T ss_pred             chhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhccee-EEEE
Confidence                      011111122221122211111 111   111111          1111111      11123332 3445


Q ss_pred             Eec--CChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          391 EFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       391 ~~~--~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .+.  ....++...|.++|+.+..+.. -..+|++.-..+|.||++++++.|++..+.
T Consensus       302 ~i~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         302 NLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             ECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            542  2346788889999998876532 123899887788999999999999987753

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.91  E-value=5e-08  Score=94.61  Aligned_cols=273  Identities=16%  Similarity=0.102  Sum_probs=157.2

Q ss_pred             HHHHHHHHhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC
Q 013008          142 QIELAKRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF  220 (451)
Q Consensus       142 ~~~l~~~l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  220 (451)
                      ..++.+.|+++.|.+.+-+ ...|++|...++.+++++++         ++++++.+.. |..+.........       
T Consensus       110 l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~---------~~~~~v~~~~-~p~~~~v~~t~a~-------  172 (437)
T d1wyua1         110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETG---------RMGVLVSQGV-HPEYRAVLRAYLE-------  172 (437)
T ss_dssp             HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHT---------CCEEEEETTS-CHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhc---------cccccccccc-ChHHhhhhhhhcc-------
Confidence            5688899999999886655 35688999899999988874         6778876654 4443333221110       


Q ss_pred             cCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc
Q 013008          221 EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA  300 (451)
Q Consensus       221 ~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~  300 (451)
                       +..-.+..++.++.......+ .+++++|++...+. -|.+..    ++++.+++++.|.++|.|--...++   ..-.
T Consensus       173 -~~g~~vv~v~~~~~~~~~~~~-~~~~Aavmi~~Pnt-~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al~---~l~~  242 (437)
T d1wyua1         173 -AVGAKLLTLPLEGGRTPLPEV-GEEVGAVVVQNPNF-LGALED----LGPFAEAAHGAGALFVAVADPLSLG---VLKP  242 (437)
T ss_dssp             -HTTCEEEEECCBTTBCCCCCC-CTTEEEEEEESSCT-TSBCCC----HHHHHHHHHHTTCEEEEECCTTGGG---TBCC
T ss_pred             -cceeeEEeeecccccchhhhh-ccceeEEEEccccc-cccccc----hHHHHHHhhhccceEEeeechhhhh---cccc
Confidence             111223334433211111112 45788888876644 355432    8999999999999888774322221   1111


Q ss_pred             ccccCCCcceeee-ccccc-----CCcccccccccHHHHhhccCCC-----------------------------ccCCC
Q 013008          301 HEHYGIFPDIMTL-AKPLA-----GGLPIGAALVTEKVASAINYGD-----------------------------HGSTF  345 (451)
Q Consensus       301 ~~~~~~~pdi~t~-sK~lg-----~G~~iG~v~~~~~i~~~~~~~~-----------------------------~~~t~  345 (451)
                      ...+|  .|+++. +|.||     ||-..|++.+++++...+....                             .+...
T Consensus       243 Pg~~G--aDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnic  320 (437)
T d1wyua1         243 PGAYG--ADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNIT  320 (437)
T ss_dssp             HHHHT--CSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCC
T ss_pred             ccccc--cceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchh
Confidence            22333  566633 45543     2455688888888776653210                             11123


Q ss_pred             CCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceecccceeE--EEEecCChHHHHHHHHHCCcee
Q 013008          346 AGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVRGLGLII--GIEFDVSATPVVDACRDSGLLV  410 (451)
Q Consensus       346 ~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~g~G~~~--~~~~~~~~~~~~~~l~~~Gv~~  410 (451)
                      +++.+.+..+..-+..+-.+++.+-             .+.+++.+..+.....+-  .+.++..+.++.++|+++|+..
T Consensus       321 t~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~~~~~i~k~L~d~G~~~  400 (437)
T d1wyua1         321 TNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRALAERGFHG  400 (437)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred             hHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCCCHHHHHHHHHhCCCCC
Confidence            3444433333333333322222211             233444443333333332  2344567889999999999874


Q ss_pred             ee----cCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008          411 LT----AGKGNVVRLVPPLIISEQELDQAVEILCKTL  443 (451)
Q Consensus       411 ~~----~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l  443 (451)
                      ..    .-..+.+.+.|.-..|+||||+++++|++++
T Consensus       401 ~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         401 ATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             CEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            32    1113678999999999999999999998864

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=1.4e-08  Score=96.54  Aligned_cols=300  Identities=9%  Similarity=-0.092  Sum_probs=150.0

Q ss_pred             CCHHHHHHHHHHHhhcccccC----CCC-C----HHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhc
Q 013008          115 GDADWIKAVVDQANVLTHVSN----MYY-S----IPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHS  182 (451)
Q Consensus       115 ~~p~v~~a~~~~~~~~~~~~~----~~~-~----~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~  182 (451)
                      .+|+|.+|+.+.+.++.....    ..+ +    ....+..+.|+++++   .+.|+|++|++++...++.....     
T Consensus        12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~-----   86 (360)
T d1bjna_          12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNIL-----   86 (360)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhccc-----
Confidence            479999999998765321110    011 1    225677788888887   23688888877776665543321     


Q ss_pred             CCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC-CeEEEEEccccCCCC
Q 013008          183 NPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-KTAAVFVEPIQGEGG  260 (451)
Q Consensus       183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~aavi~ep~~~~~G  260 (451)
                           .+++.+++....+.+......... +........ +      .-...+.+.+++.+... +..+|.. ..+ .+|
T Consensus        87 -----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~v~v~~-~~~-~t~  152 (360)
T d1bjna_          87 -----GDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAK-V------TVDGLRAVKPMREWQLSDNAAYMHY-CPN-ETI  152 (360)
T ss_dssp             -----TTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECE-E------EETTEEEECCGGGCCCCSSCSCEEE-CSE-ETT
T ss_pred             -----ccccccceecccchhhhhHHHHhhcCccceeecc-c------cCCCcchhhhhhhhccCCceeEEEe-ccc-ccc
Confidence                 145666666544433322211111 100000000 0      00001233344444432 2333332 222 233


Q ss_pred             ccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC-
Q 013008          261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG-  339 (451)
Q Consensus       261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~-  339 (451)
                      ...+.    +.+  .|+.+++++++|-+++ ++..    -.+..++..++.+.+|.++++.+.+.++..+...+..... 
T Consensus       153 ~~~~~----~~i--~~~~~~~~v~vDa~~~-~~~~----~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~  221 (360)
T d1bjna_         153 DGIAI----DET--PDFGADVVVAADFSST-ILSR----PIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACP  221 (360)
T ss_dssp             TTEEC----CCC--CCCCTTCCEEEECTTT-TTSS----CCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSC
T ss_pred             cCccc----cce--ecccccceeeeeeecc-ccce----eeeeccceeEEEEcccccccCCCceeEeeehhhhhccccCC
Confidence            33442    222  4678899999997764 4221    2334455667778889998654455555444333222111 


Q ss_pred             ----------CccCCCCC-cHHHHHHHHHHHHHhcChHHH---HH----------HHhCCCC-----cceecccceeEEE
Q 013008          340 ----------DHGSTFAG-SPLVCNAAIAVLDKISNPAFL---AS----------KLARNPH-----VKDVRGLGLIIGI  390 (451)
Q Consensus       340 ----------~~~~t~~~-~~~~~aaa~aal~~~~~~~~~---~~----------~~~~~~~-----~~~v~g~G~~~~~  390 (451)
                                ........ .+....+....+..+......   ++          .......     ....+..+ ...|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~-v~~f  300 (360)
T d1bjna_         222 SILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRM-NVPF  300 (360)
T ss_dssp             GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSS-EEEE
T ss_pred             cchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccce-EEEE
Confidence                      01111122 222222222333322221111   11          1111111     11122222 3455


Q ss_pred             Eec--CChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008          391 EFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV  445 (451)
Q Consensus       391 ~~~--~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~  445 (451)
                      .+.  .....+...|.++||.+..+.. -+.+|++....+|+|||+++++.|++..++
T Consensus       301 ~~~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         301 QLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             EESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EcCCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            552  3457788999999998876632 123899998899999999999999987653

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.85  E-value=2e-07  Score=89.93  Aligned_cols=306  Identities=16%  Similarity=0.134  Sum_probs=167.6

Q ss_pred             CCCHHHHHHHHHHHh-hccccc---C-CCCCHHHHH---HH-HHHhhccCCC----eE-EecCCHHHHHHHHHHHHHHHh
Q 013008          114 HGDADWIKAVVDQAN-VLTHVS---N-MYYSIPQIE---LA-KRLVACSFAD----RV-FFSNTGTEANEAAIKFARKFQ  179 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~-~~~~~~---~-~~~~~~~~~---l~-~~l~~~~~~e----~v-~~~~sG~eA~~~al~~a~~~~  179 (451)
                      +..|.|++++...+. ++.-++   . +...+...+   ++ ++..+.++.+    .+ +=..||+.||.+++.++.   
T Consensus        42 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all---  118 (470)
T d1rv3a_          42 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV---  118 (470)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT---
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc---
Confidence            367888888776553 222111   1 123343333   33 3345556644    22 235689999999998665   


Q ss_pred             hhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC------CcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008          180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE------HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE  253 (451)
Q Consensus       180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e  253 (451)
                              .|+|+|+..+..--|+...........      .+.....+..++...+   |.+++++..+..++++||+-
T Consensus       119 --------~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~I---Dyd~l~~~a~~~kPklIi~G  187 (470)
T d1rv3a_         119 --------EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI---DYDRLEENARLFHPKLIIAG  187 (470)
T ss_dssp             --------CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSB---CHHHHHHHHHHHCCSEEEEC
T ss_pred             --------CCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcc---cHHHHHHHHHhhCcceEeec
Confidence                    279999999766545433221110000      0000001111111111   78888888876677888886


Q ss_pred             cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCcceeeec--ccccCCcccccccccH
Q 013008          254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE  330 (451)
Q Consensus       254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~  330 (451)
                      ...-.-  ..+    +++++++|++.|++|++|=.| +|+--.|. +. .-+. ..|++|.+  |+|.| -+.|.|+.++
T Consensus       188 ~S~y~r--~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g~-~~-sPl~-~aDvvt~tTHKtlrG-PrgGiI~~~~  257 (470)
T d1rv3a_         188 TSCYSR--NLD----YGRLRKIADENGAYLMADMAHISGLVVAGV-VP-SPFE-HCHVVTTTTHKTLRG-CRAGMIFYRR  257 (470)
T ss_dssp             CSSCCS--CCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-SC-CGGG-TCSEEEEESSGGGCC-CSCEEEEEEC
T ss_pred             hhhccc--cCC----HHHHHHHHhccCCeEEecchhhhhhccccc-cC-Chhh-eeeeeeeehhhhccC-CcceEEEEcc
Confidence            543221  233    899999999999999999998 44522222 11 1112 24888765  88864 3557777654


Q ss_pred             H---------------HHhhccCCCccCCCCCcHHHHHHHH-HHHHHhcChHHH---HH-----------HHh-CCCCcc
Q 013008          331 K---------------VASAINYGDHGSTFAGSPLVCNAAI-AVLDKISNPAFL---AS-----------KLA-RNPHVK  379 (451)
Q Consensus       331 ~---------------i~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~~~~---~~-----------~~~-~~~~~~  379 (451)
                      +               +.+.+....+.+..+++-+...|++ .++.....+++.   ++           +.+ .++.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~v~~  337 (470)
T d1rv3a_         258 GVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVT  337 (470)
T ss_dssp             SBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred             ccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCceecc
Confidence            3               4444443223334444333333333 334443343332   21           222 222221


Q ss_pred             eecccceeEEEEec---CChHHHHHHHHHCCceeee----cCC----CCEEEEeCC----CCCCHHHHHHHHHHHHHHHH
Q 013008          380 DVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLT----AGK----GNVVRLVPP----LIISEQELDQAVEILCKTLP  444 (451)
Q Consensus       380 ~v~g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~----~~~----~~~iri~~~----~~~t~e~i~~~l~~l~~~l~  444 (451)
                      .- -...++.+++.   .....+.+.|.+.||.+..    +..    +.-+||-.+    ....++|+.++.+.|.++++
T Consensus       338 gg-TdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         338 GG-SDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             GS-CSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CC-CCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            11 12356677773   3456666777778998752    211    245898654    45678999999999998875

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.79  E-value=8.9e-07  Score=86.67  Aligned_cols=311  Identities=15%  Similarity=0.143  Sum_probs=172.1

Q ss_pred             CCCHHHHHHHHHHHhhcccccCCCCC-H-------HHHHHHHHHhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCC
Q 013008          114 HGDADWIKAVVDQANVLTHVSNMYYS-I-------PQIELAKRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNP  184 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~~~l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~~  184 (451)
                      |-+|.+.+.+.+   .++. ++.|.. +       ..-++...+++++++|-+=. ...|..|...|+.+++++++.++.
T Consensus        76 hy~P~v~~~~~~---~~Ta-YTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~  151 (471)
T d1wyub1          76 KYNPKLHEEAAR---LFAD-LHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGE  151 (471)
T ss_dssp             CCCCHHHHHHHH---TTSS-CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCcchhhhHHH---HHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhccc
Confidence            556888887754   2322 233332 2       14577888999999875433 356888888888888888765443


Q ss_pred             CCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCcccc
Q 013008          185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA  264 (451)
Q Consensus       185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~  264 (451)
                      .   ....++...+.+|..........+......   +....    ...|.+.++.... ++++++++...+..+.....
T Consensus       152 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~-~~~a~v~v~~p~~~g~~e~~  220 (471)
T d1wyub1         152 G---RTRRVVLVPDSAHGSNPATASMAGYQVREI---PSGPE----GEVDLEALKRELG-PHVAALMLTNPNTLGLFERR  220 (471)
T ss_dssp             T---TTCCEEEEETTSCTHHHHHHHHTTCEEEEE---CBCTT----SSBCHHHHHHHCS-TTEEEEEECSSCTTSCCCTT
T ss_pred             c---cccccccCCcccccceeeeeecccceeecc---ccccc----ccccchhhhhhhh-ccccceeeccCCCcccccch
Confidence            2   234456666666655433332222111110   00000    0126777777764 46788887776666543222


Q ss_pred             CHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--ccccc----C-CcccccccccHHHHhhcc
Q 013008          265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLA----G-GLPIGAALVTEKVASAIN  337 (451)
Q Consensus       265 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg----~-G~~iG~v~~~~~i~~~~~  337 (451)
                          .+++.+++++++..+++|-+--.. -.+.. ....++  .|+++.  ++.+|    + |--+|++.++++++..+.
T Consensus       221 ----~~~~~~~~h~~g~~~~~~~~~~~~-~~~l~-~p~~~g--~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~P  292 (471)
T d1wyub1         221 ----ILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLP  292 (471)
T ss_dssp             ----HHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCC
T ss_pred             ----hhhhHHHHHhccccccccccchhh-hhhcc-ccCccc--ccccccccccccccccccccccccceeehhhhhccCC
Confidence                788999999999988887543211 01100 011111  344433  35443    3 355788888988877653


Q ss_pred             CC----------------Cc---cCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCC--CCcceecccce
Q 013008          338 YG----------------DH---GSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARN--PHVKDVRGLGL  386 (451)
Q Consensus       338 ~~----------------~~---~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~--~~~~~v~g~G~  386 (451)
                      ..                .|   ....+++.+.+.++...+..+-.+++.+-          +++++  +.+......-+
T Consensus       293 GRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~f  372 (471)
T d1wyub1         293 VPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPS  372 (471)
T ss_dssp             SCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSC
T ss_pred             CceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceeccCcce
Confidence            11                01   11233444444444444444433333322          11111  22222222222


Q ss_pred             eEEEEe--c--CChHHHHHHHHHCCceeeec----CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008          387 IIGIEF--D--VSATPVVDACRDSGLLVLTA----GKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD  447 (451)
Q Consensus       387 ~~~~~~--~--~~~~~~~~~l~~~Gv~~~~~----~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~  447 (451)
                      +--|.+  +  ....++.++|++.|++-...    ...+.+.|++.=.+|+||||+++++|++++++.+
T Consensus       373 f~EFvv~~~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~  441 (471)
T d1wyub1         373 MHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK  441 (471)
T ss_dssp             CSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred             eeEEeecCCCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence            222222  2  34677999999999865321    1125688999999999999999999999998654

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.78  E-value=1.3e-07  Score=91.05  Aligned_cols=305  Identities=15%  Similarity=0.140  Sum_probs=155.9

Q ss_pred             CCCHHHHHHHHHHHh-hcccccC---CC----CCHHHHHHH-HHHhhccCCCe-----EEecCCHHHHHHHHHHHHHHHh
Q 013008          114 HGDADWIKAVVDQAN-VLTHVSN---MY----YSIPQIELA-KRLVACSFADR-----VFFSNTGTEANEAAIKFARKFQ  179 (451)
Q Consensus       114 ~~~p~v~~a~~~~~~-~~~~~~~---~~----~~~~~~~l~-~~l~~~~~~e~-----v~~~~sG~eA~~~al~~a~~~~  179 (451)
                      +..|.|++++...+. ++.-++.   +|    ..+..+.++ ++..+.++.+.     -+=..||+.||.+++..+.   
T Consensus        38 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all---  114 (463)
T d2a7va1          38 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL---  114 (463)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC---
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHc---
Confidence            356778777766553 2222111   01    112233343 34445566442     2345689999999888665   


Q ss_pred             hhcCCCCCCCCceEEEEcCCccCChhhhh-------hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE
Q 013008          180 RHSNPDSKEPATEFVSFTNSFHGRTMGAL-------ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV  252 (451)
Q Consensus       180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~  252 (451)
                              +|+|+|+..+...-|+..-..       ..++.. +........+....+   |.++++++.+..++++||+
T Consensus       115 --------~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~-~~~~~Y~~d~~~~~I---Dyd~~~~~a~~~kPklIi~  182 (463)
T d2a7va1         115 --------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF-FESMPYKLNPKTGLI---DYNQLALTARLFRPRLIIA  182 (463)
T ss_dssp             --------CSCEECCC--------------------------------CCBCTTTCSB---CHHHHHHHHHHHCCSEEEE
T ss_pred             --------CCCceEEeeccCcCcccccccccccccccceeeE-eeeeeeeccCCCCcC---cHHHHHHHHhhcCCceEEe
Confidence                    279999988766544432221       111110 000000111111111   7889988887667788888


Q ss_pred             ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCcceeeec--ccccCCccccccccc
Q 013008          253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT  329 (451)
Q Consensus       253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~  329 (451)
                      -...-.-  ..+    +++++++|++.|++|++|=.| +|+--.|. +. .-+. ..|++|.+  |+|.| -+.|.|+++
T Consensus       183 G~S~y~r--~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g~-~~-sP~~-~aDvvt~tTHKTlrG-PrgGiIl~~  252 (463)
T d2a7va1         183 GTSAYAR--LID----YARMREVCDEVKAHLLADMAHISGLVAAKV-IP-SPFK-HADIVTTTTHKTLRG-ARSGLIFYR  252 (463)
T ss_dssp             CCSSCCS--CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTS-SC-CGGG-TCSEEEEESSGGGCS-CSCEEEEEE
T ss_pred             ccccccc--ccC----HHHHHHHhhcccceEEechhhhhHHhhhhh-hc-Chhh-hhhhhhchhhhhhcC-CCceEEEEc
Confidence            6542221  233    899999999999999999998 45522222 11 1122 24888766  88864 365777776


Q ss_pred             H---------------HHHhhccCCCccCCCCCcHHHHHHHH-HHHHHhcChH---HHHH-------HHh---CCCCcce
Q 013008          330 E---------------KVASAINYGDHGSTFAGSPLVCNAAI-AVLDKISNPA---FLAS-------KLA---RNPHVKD  380 (451)
Q Consensus       330 ~---------------~i~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~~---~~~~-------~~~---~~~~~~~  380 (451)
                      +               ++.+.+....+.+..+++-+...|++ .++....+++   +.++       +++   ... +.-
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G-~~v  331 (463)
T d2a7va1         253 KGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG-YSL  331 (463)
T ss_dssp             CSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEE
T ss_pred             ccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCC-Cee
Confidence            5               33333332222333333333333333 2233322322   2222       211   111 211


Q ss_pred             ecc--cceeEEEEec---CChHHHHHHHHHCCceeee----cCC----CCEEEEeCC----CCCCHHHHHHHHHHHHHHH
Q 013008          381 VRG--LGLIIGIEFD---VSATPVVDACRDSGLLVLT----AGK----GNVVRLVPP----LIISEQELDQAVEILCKTL  443 (451)
Q Consensus       381 v~g--~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~----~~~----~~~iri~~~----~~~t~e~i~~~l~~l~~~l  443 (451)
                      +.|  ...++.+++.   .......+.|-+.||.+..    ...    ...+||-.+    ....++|+.++.+.|.+++
T Consensus       332 v~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l  411 (463)
T d2a7va1         332 VSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGV  411 (463)
T ss_dssp             GGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            222  2346677772   3456677777788988762    211    245899654    3457899999999998877


Q ss_pred             H
Q 013008          444 P  444 (451)
Q Consensus       444 ~  444 (451)
                      +
T Consensus       412 ~  412 (463)
T d2a7va1         412 N  412 (463)
T ss_dssp             H
T ss_pred             H
Confidence            5